BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008280
         (571 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/571 (74%), Positives = 495/571 (86%), Gaps = 2/571 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VKTTV WNS+LAG++ +RGK+K A++LFD+IP+PD+ SYNIML+C L N+D V +A  
Sbjct: 31  MTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNAD-VESARL 89

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF ++P+KDTASWNTMISGF Q   M +AR+LFL MP +NSVSW+AMISGY+E G LD A
Sbjct: 90  FFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLA 149

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF+VAPV+SVVAWTAMI+G+MKFGK++LAEK F+EMP KNLVTWNAMIAGY+EN  AE
Sbjct: 150 KQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAE 209

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           +GLKL + M+  G RPN SSLSSVLLGCS+LS+L+LGKQVHQL+ KSP+  + TA T L+
Sbjct: 210 NGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLL 269

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMYCKCGDLEDA KLFL + +KDVVTWNAMISGYAQHG GEKAL LFDKM+DEGMKPD I
Sbjct: 270 SMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWI 329

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFVA+L ACNHAG VDLGI+YF+SMV DYG+ AKPDHYTC+VDLLGR GKLVEAVDLIKK
Sbjct: 330 TFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKK 389

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPFKP  AIFGTLL ACR+HK L+LAEFAA NL NL+P +AAG YVQLAN+YAAM +WD 
Sbjct: 390 MPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAG-YVQLANVYAAMNRWDH 448

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA +R SMK+N V+K PGYSWIEV +VVHEFRSGDR+HPEL  IHEKL ELE++M+LAGY
Sbjct: 449 VAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGY 508

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPDLE+ALH VGEE K+Q+LL HSEKLAIA+GLI++PLGTPIRVFKNLRVCGDCH ATKY
Sbjct: 509 VPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKY 568

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ISAIE R IIVRDTTRFHHF+ G CSCGDYW
Sbjct: 569 ISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 158/297 (53%), Gaps = 10/297 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI-ECGQLDKAVELFKVA 127
           +  S N +I+  ++  ++  A  +F +M  K +V+W++M++GY    G++  A +LF   
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P   + ++  M++ Y+    V+ A   FD+MP K+  +WN MI+G+ +N   +   +L  
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +M    +R N+ S ++++ G      L L KQ    +F+    +   A T +I+ + K G
Sbjct: 124 VM---PVR-NSVSWNAMISGYVESGDLDLAKQ----LFEVAPVRSVVAWTAMITGFMKFG 175

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +E A K F E+  K++VTWNAMI+GY ++ + E  L+LF +M + G +P+  +  ++LL
Sbjct: 176 KIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLL 235

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            C++   + LG Q    ++    ++      T ++ +  + G L +A  L   MP K
Sbjct: 236 GCSNLSALKLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK 291



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 144/310 (46%), Gaps = 25/310 (8%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V++   +I+ +++ G ++ A ++F+ M  K  VTWN+M+AGY   S     +K+ R + 
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGY---SNRRGKIKVARQLF 60

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
                P+  S + +L    H + ++  +    L F     KDT +   +IS + + G ++
Sbjct: 61  DRIPEPDIFSYNIMLACYLHNADVESAR----LFFDQMPVKDTASWNTMISGFSQNGMMD 116

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A +LFL +  ++ V+WNAMISGY + G  + A +LF+      +    + + A++    
Sbjct: 117 QARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSV----VAWTAMITGFM 172

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQP 367
             G ++L  +YF+ M     +      +  M+       +    + L K+M    F+P P
Sbjct: 173 KFGKIELAEKYFEEMPMKNLVT-----WNAMIAGYIENCQAENGLKLFKRMVESGFRPNP 227

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLANIYAAMKKWDDVARI 424
           +   ++L  C     L L +     L   +P +    AG    L ++Y      +D  ++
Sbjct: 228 SSLSSVLLGCSNLSALKLGK-QVHQLICKSPVSWNITAG--TSLLSMYCKCGDLEDAWKL 284

Query: 425 RLSMKENNVV 434
            L M + +VV
Sbjct: 285 FLVMPQKDVV 294


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/571 (74%), Positives = 489/571 (85%), Gaps = 2/571 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +KTTV WNSVLAG +K+RGKLK+AQELF KIP+PD VSYN MLSC + NS+ +  A  
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSN-MERAQA 59

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF+ +PIKDT SWNTMI+GF Q + M KARDLFL MP KN V+W+AMISGY+ECG LD A
Sbjct: 60  FFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSA 119

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++LF+ AP KSVVAWTAMI+GYMK G++ LAE+LF++MP KNLVTWNAMIAGY+EN  AE
Sbjct: 120 LKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAE 179

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           DG+KL R M+G GI+PN+S+LSS LLGCS LS+LQLG+QVHQLV KSPLC DTTA T LI
Sbjct: 180 DGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLI 239

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMYCKCG LED  KLF+++ R+DVVTWNAMISGYAQHG+G+KAL LFD+M ++GMKPD I
Sbjct: 240 SMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWI 299

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFVA+L+ACNHAG  DLG++YF SM  DYG+ AKPDHYTCMVDLLGRAGKLVEAVDLI+K
Sbjct: 300 TFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEK 359

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPFKP  A+FGTLL ACR+HK  ++AEFA+  L NL+PA+A G YVQLAN+YAA K+WD 
Sbjct: 360 MPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATG-YVQLANVYAATKRWDH 418

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VAR+R SMK   VVK PGYSWIEV ++ H+FRSGD+ HPEL SIH KLKELEK+MKLAGY
Sbjct: 419 VARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGY 478

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPDLEFALH VGEE KEQLLL+HSEKLAIA+GLIK+P GTPIRVFKNLRVCGDCHRA KY
Sbjct: 479 VPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKY 538

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS IE+REIIVRDTTRFHHFKDG CSC DYW
Sbjct: 539 ISQIERREIIVRDTTRFHHFKDGHCSCADYW 569


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/571 (72%), Positives = 475/571 (83%), Gaps = 2/571 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK+TV WNS+LA FAK+ G  + A++LF+KIPQP+ VSYNIML+C   +   V  A  
Sbjct: 67  MKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLAC-HWHHLGVHDARG 125

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF  +P+KD ASWNTMIS   Q   M +AR LF AMPEKN VSWSAM+SGY+ CG LD A
Sbjct: 126 FFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAA 185

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           VE F  AP++SV+ WTAMI+GYMKFG+V+LAE+LF EM  + LVTWNAMIAGYVEN  AE
Sbjct: 186 VECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAE 245

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           DGL+L R M+  G++PNA SL+SVLLGCS+LS+LQLGKQVHQLV K PL  DTTA T L+
Sbjct: 246 DGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLV 305

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMY KCGDL+DA +LF++I RKDVV WNAMISGYAQHG G+KALRLFD+MK EG+KPD I
Sbjct: 306 SMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWI 365

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFVA+LLACNHAGLVDLG+QYF++M  D+GI  KP+HY CMVDLLGRAGKL EAVDLIK 
Sbjct: 366 TFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKS 425

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPFKP PAI+GTLL ACR+HK L+LAEFAA NL  L+P  A G YVQLAN+YAA  +WD 
Sbjct: 426 MPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATG-YVQLANVYAAQNRWDH 484

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA IR SMK+NNVVK+PGYSWIE+ +VVH FRS DR+HPEL SIHEKLK+LEK+MKLAGY
Sbjct: 485 VASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGY 544

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPDLEF LH VGEE+KEQLLL+HSEKLAIAFGL+KVPLG PIRVFKNLRVCGDCH ATKY
Sbjct: 545 VPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKY 604

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS IE REIIVRDTTRFHHFKDG CSC DYW
Sbjct: 605 ISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/571 (71%), Positives = 473/571 (82%), Gaps = 2/571 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V+TTV WN++L+G+ K  GK+K+A ELFDKIP+PD VSYNIML C  L S  V AA  
Sbjct: 99  MSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVC-YLRSYGVEAALA 157

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF ++P+KD ASWNT+ISGF Q   M KA DLF  MPEKN VSWSAMISGY+E G L+ A
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAA 217

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            EL+K   +KSVV  TAM++GYMKFGKV+LAE++F  M  KNLVTWN+MIAGYVEN  AE
Sbjct: 218 EELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAE 277

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           DGLK+ + MI   +RPN  SLSSVLLGCS+LS+L LG+Q+HQLV KSPL KDTTA T LI
Sbjct: 278 DGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLI 337

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMYCKCGDL+ A KLFLE+ RKDV++WNAMISGYAQHG G KAL LFDKM++  MKPD I
Sbjct: 338 SMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWI 397

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFVA++LACNHAG VDLG+QYF SM  ++GI AKP HYTC++DLLGRAG+L EAV LIK+
Sbjct: 398 TFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPFKP  AI+GTLL ACR+HK LDLAEFAA NL NL+P +A G YVQLANIYAA  KWD 
Sbjct: 458 MPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG-YVQLANIYAATNKWDQ 516

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA++R  MKE+NVVK+PGYSWIE+ +V HEFRS DR+HPEL SIH+KL EL+ +MKLAGY
Sbjct: 517 VAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGY 576

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPDLEFALH V EE KE+LLL+HSEKLAIAFGL+K   GTPIRVFKNLRVCGDCHRA K+
Sbjct: 577 VPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKF 636

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ISAIEKREIIVRDTTRFHHF++G CSCGDYW
Sbjct: 637 ISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 158/297 (53%), Gaps = 10/297 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVA 127
           D  S N  I+ FV+  ++  AR++F  M  + +V+W+ M+SGY +  G++ +A ELF   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P    V++  M+  Y++   V+ A   F++MP K++ +WN +I+G+ +N   +    L  
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +M       N  S S+++ G      L+  ++    ++K+   K     T +++ Y K G
Sbjct: 192 VM----PEKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGMKSVVVETAMLTGYMKFG 243

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +E A ++F  +  K++VTWN+MI+GY ++ + E  L++F  M +  ++P+ ++  ++LL
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            C++   + LG Q    +V+   ++      T ++ +  + G L  A  L  +MP K
Sbjct: 304 GCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 13/158 (8%)

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ-HGKGEKALRLFDKM 290
           D  +L   I+ + +  DLE A  +F ++  +  VTWN M+SGY +  GK ++A  LFDK+
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAG 349
            +    PDS+++  +L+    +  V+  + +F+ M V D  IA+    +  ++    + G
Sbjct: 132 PE----PDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKD--IAS----WNTLISGFAQNG 181

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           ++ +A DL   MP K     +  ++S    H  L+ AE
Sbjct: 182 QMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAE 218


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/571 (71%), Positives = 472/571 (82%), Gaps = 2/571 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V+TTV WN++L+G+ K  GK+K+A ELFDKIP+PD VSYNIML C  L S  V AA  
Sbjct: 99  MSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVC-YLRSYGVKAALA 157

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF ++P+KD ASWNT+ISGF Q   M KA DLF  MPEKN VSWSAMISGY+E G L+ A
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAA 217

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            EL+K   +KSVV  TAM++GYMKFGKV+LAE++F  M  KNLVTWN+MIAGYVEN  AE
Sbjct: 218 EELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAE 277

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           DGLK+ + MI   +RPN  SLSSVLLGCS+LS+L LG+Q+HQLV KSPL KDTTA T LI
Sbjct: 278 DGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLI 337

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMYCKCGDL+ A KLFLE+ RKDV+TWNAMISGYAQHG G KAL LFDKM++  MKPD I
Sbjct: 338 SMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWI 397

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFVA++LACNHAG VDLG+QYF SM  ++GI AKP HYTC++DLLGRAG+L EAV LIK+
Sbjct: 398 TFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPF P  AI+GTLL ACR+HK LDLAEFAA NL NL+P +A G YVQLANIYAA  KWD 
Sbjct: 458 MPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG-YVQLANIYAATNKWDQ 516

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA++R  MKE+NVVK+PGYSWIE+ +V HEFRS DR+HPEL SIH+KL EL+ +MKLAGY
Sbjct: 517 VAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGY 576

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPDLEFALH V EE KE+LLL+HSEKLAIAFGL+K   GTPIRVFKNLRVCGDCHRA K+
Sbjct: 577 VPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKF 636

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ISAIEKREIIVRDTTRFHHF++G CSCGDYW
Sbjct: 637 ISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 157/297 (52%), Gaps = 10/297 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVA 127
           D  S N  I+ FV+  ++  AR++F  M  + +V+W+ M+SGY +  G++ +A ELF   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P    V++  M+  Y++   V  A   F++MP K++ +WN +I+G+ +N   +    L  
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +M       N  S S+++ G      L+  ++    ++K+   K     T +++ Y K G
Sbjct: 192 VM----PEKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGMKSVVVETAMLTGYMKFG 243

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +E A ++F  +  K++VTWN+MI+GY ++ + E  L++F  M +  ++P+ ++  ++LL
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            C++   + LG Q    +V+   ++      T ++ +  + G L  A  L  +MP K
Sbjct: 304 GCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK 359



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 13/158 (8%)

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ-HGKGEKALRLFDKM 290
           D  +L   I+ + +  DLE A  +F ++  +  VTWN M+SGY +  GK ++A  LFDK+
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAG 349
            +    PDS+++  +L+    +  V   + +F+ M V D  IA+    +  ++    + G
Sbjct: 132 PE----PDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKD--IAS----WNTLISGFAQNG 181

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           ++ +A DL   MP K     +  ++S    H  L+ AE
Sbjct: 182 QMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAE 218


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/572 (68%), Positives = 463/572 (80%), Gaps = 3/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K T+ WNS+L G +K   ++ +A +LFD+IP+PD  SYNIMLSC + N +    A  
Sbjct: 87  MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQS 145

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF R+P KD ASWNTMI+G+ ++  M KAR+LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWA 179
              FKVAPV+ VVAWTAMI+GYMK  KV+LAE +F +M   KNLVTWNAMI+GYVENS  
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           EDGLKL R M+  GIRPN+S LSS LLGCS LS+LQLG+Q+HQ+V KS LC D TALT L
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSL 325

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           ISMYCKCG+L DA KLF  +++KDVV WNAMISGYAQHG  +KAL LF +M D  ++PD 
Sbjct: 326 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 385

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           ITFVA+LLACNHAGLV++G+ YF+SMV DY +  +PDHYTCMVDLLGRAGKL EA+ LI+
Sbjct: 386 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 445

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MPF+P  A+FGTLL ACRVHK ++LAEFAA  L  LN  NAAG YVQLANIYA+  +W+
Sbjct: 446 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWE 504

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           DVAR+R  MKE+NVVK+PGYSWIE+   VH FRS DR+HPEL SIH+KLKELEK+MKLAG
Sbjct: 505 DVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAG 564

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+ I+VFKNLR+CGDCH+A K
Sbjct: 565 YKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIK 624

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +IS IEKREIIVRDTTRFHHFKDG+CSCGDYW
Sbjct: 625 FISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/544 (63%), Positives = 415/544 (76%), Gaps = 20/544 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K TV+WNS+L G +K   ++ +A +LFD+IP+PD  SYNIMLSC + N +    A  
Sbjct: 87  MRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGN-FEKAQS 145

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF R+P KD ASWNTMI+G+ ++  M KAR LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWA 179
              FK AP + VVAWTAMI+GYMK  KV+LAE +F +M  K NLVTWNAMI+GYVENS  
Sbjct: 206 AHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRP 265

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           EDGLKL R M+  GIRPN+S LSS LLGCS LS+L LG+Q+HQ+V               
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIV--------------- 310

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
             MYCKCG+L DA KLF  +++KDVV WNAMISGYAQHG  EKAL LF +M+D   KPD 
Sbjct: 311 --MYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDW 368

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           ITFVA+LLACNHAGLVD+G+ YFDSMV DY +  +PDHYTCMVDLLGRAGK+ EA+ LI+
Sbjct: 369 ITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIR 428

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MPF+P  A+FGTLL ACRVHK ++LAEFAA  L  L+P NAAG YVQLANIYA+   W+
Sbjct: 429 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAG-YVQLANIYASKNLWE 487

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           DVAR+R  MKE+NVVK+PGYSWIE+   +H FRS DR+HPEL SIH+KLKELE++MKLAG
Sbjct: 488 DVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSDRIHPELDSIHKKLKELERKMKLAG 547

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+PI+VFKNLR+C    R + 
Sbjct: 548 YKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSPIQVFKNLRICASGSRVSD 607

Query: 540 YISA 543
           +  A
Sbjct: 608 HFPA 611



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 84/282 (29%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG------------------------- 172
           +I+  ++ G +D A  +F  M  KN V+WN+++ G                         
Sbjct: 67  IIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIPEPDTFS 126

Query: 173 -------YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
                  YV N   E        M       +A+S ++++ G +    ++  +    ++F
Sbjct: 127 YNIMLSCYVRNGNFEKAQSFFNRMPF----KDAASWNTMITGYARRGEMEKAR----VLF 178

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLF-----------------------LEIQ-- 260
            S + K+  +   +IS Y +CGDLE A   F                       +E+   
Sbjct: 179 YSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEA 238

Query: 261 -------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
                  +K++VTWNAMISGY ++ + E  L+LF  M +EG++P+S    + LL C+   
Sbjct: 239 MFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS 298

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            + LG Q    ++             C    LG A KL EA+
Sbjct: 299 ALCLGRQIHQIVM------------YCKCGELGDAWKLFEAM 328


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/570 (58%), Positives = 420/570 (73%), Gaps = 4/570 (0%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PD VSYN +LSC    S D   A   F 
Sbjct: 95  KTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSC-HFASGDADGARRLFA 153

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D  SWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+     +  A E 
Sbjct: 154 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEW 213

Query: 124 FKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           F+ AP K   V WTAM+SGYM  G V  A + F+ MP +NLV+WNA++AGYV+NS A+D 
Sbjct: 214 FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 273

Query: 183 LKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K PL ++ T  T L+S
Sbjct: 274 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 333

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MYCKCGDL  ACKLF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 334 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 393

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FVA+L AC H GL D GI+ F+ M   YGI  + DHY+CMVDLL RAGKL  AVDLI+ M
Sbjct: 394 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 454 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAGANQWDDV 512

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 513 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYV 572

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PDL+F LH V E +K Q+L+ HSEKLAI+FGLI    G  +R+FKNLRVCGDCH A K I
Sbjct: 573 PDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVI 632

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 633 SKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 19/270 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA  R  +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 186 MPVRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSG-YMDIGNVVKAI 243

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV--SWSAMISGYIECGQL 117
           ++F+ +P+++  SWN +++G+V+  +   A  LF  M  + +V  + S + S  + C  L
Sbjct: 244 EYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 303

Query: 118 D-----KAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
                 K +  +  K+   +++   T+++S Y K G +  A KLF EM T+++V WNAMI
Sbjct: 304 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 363

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFK 226
           +GY ++   ++ + L   M   G+ PN  +  +VL  C H      G    + + +L   
Sbjct: 364 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGI 423

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            P     + +  L+   C+ G LE A  L 
Sbjct: 424 EPRVDHYSCMVDLL---CRAGKLERAVDLI 450



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVAL 305
           GDL  A + F    RK   T+N +++GYA+  G+   A  LFD++      PD++++  L
Sbjct: 80  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSYNTL 135

Query: 306 LLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           L     +G  D   + F SM V D         +  MV  L ++G + EA  +   MP +
Sbjct: 136 LSCHFASGDADGARRLFASMPVRDV------VSWNTMVSGLSKSGAVEEAKAVFLAMPVR 189


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/570 (58%), Positives = 420/570 (73%), Gaps = 4/570 (0%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PD VSYN +LSC    S D   A   F 
Sbjct: 46  KTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSC-HFASGDADGARRLFA 104

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D  SWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+     +  A E 
Sbjct: 105 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEW 164

Query: 124 FKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           F+ AP K   V WTAM+SGYM  G V  A + F+ MP +NLV+WNA++AGYV+NS A+D 
Sbjct: 165 FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 183 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K PL ++ T  T L+S
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MYCKCGDL  ACKLF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FVA+L AC H GL D GI+ F+ M   YGI  + DHY+CMVDLL RAGKL  AVDLI+ M
Sbjct: 345 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAGANQWDDV 463

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 464 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYV 523

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PDL+F LH V E +K Q+L+ HSEKLAI+FGLI    G  +R+FKNLRVCGDCH A K I
Sbjct: 524 PDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVI 583

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 584 SKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 19/270 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA  R  +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 137 MPVRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSG-YMDIGNVVKAI 194

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV--SWSAMISGYIECGQL 117
           ++F+ +P+++  SWN +++G+V+  +   A  LF  M  + +V  + S + S  + C  L
Sbjct: 195 EYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 254

Query: 118 D-----KAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
                 K +  +  K+   +++   T+++S Y K G +  A KLF EM T+++V WNAMI
Sbjct: 255 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 314

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFK 226
           +GY ++   ++ + L   M   G+ PN  +  +VL  C H      G    + + +L   
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGI 374

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            P     + +  L+   C+ G LE A  L 
Sbjct: 375 EPRVDHYSCMVDLL---CRAGKLERAVDLI 401



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVAL 305
           GDL  A + F    RK   T+N +++GYA+  G+   A  LFD++      PD++++  L
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSYNTL 86

Query: 306 LLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           L     +G  D   + F SM V D         +  MV  L ++G + EA  +   MP +
Sbjct: 87  LSCHFASGDADGARRLFASMPVRDV------VSWNTMVSGLSKSGAVEEAKAVFLAMPVR 140


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/570 (58%), Positives = 417/570 (73%), Gaps = 4/570 (0%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PDVVSYN +L C    S D   A   F 
Sbjct: 46  KTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLC-HFASGDADGARRLFA 104

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D ASWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+   G +  A E 
Sbjct: 105 SMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEW 164

Query: 124 FKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           F+ AP K   V WTAM+SGYM  G V  A K F+ MP +NLV+WNA++AGYV+NS A+D 
Sbjct: 165 FRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 183 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K  L ++ T  T L+S
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVS 284

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MYCKCGDL  AC LF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 285 MYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FV +L AC H GL D GIQ F+ M   YGI  + DHY+CMVDLL RAGKL  AVD I+ M
Sbjct: 345 FVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSM 404

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAVANQWDDV 463

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 464 SRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYV 523

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PDL+F LH V E +K Q+L+ HSEKLAIAFGLI    G  +R+FKNLRVCGDCH A K I
Sbjct: 524 PDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVI 583

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S IE REII+RDTTRFHHF+ G CSC DYW
Sbjct: 584 SMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 19/266 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA   G +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 137 MPVRNSVSWNAMVSGFACS-GDMSTAEEWFRNAPEKEDAVLWTAMVSG-YMDIGNVVKAI 194

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV--SWSAMISGYIECGQL 117
            +F+ +P+++  SWN +++G+V+  +   A  LF  M  + +V  + S + S  + C  L
Sbjct: 195 KYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 254

Query: 118 D-----KAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
                 K +  +  K+   +++   T+++S Y K G +  A  LF EM T+++V WNAMI
Sbjct: 255 SALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMI 314

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VHQLVFK 226
           +GY ++   ++ + L   M   G+ PN  +   VL  C H      G Q    + +L   
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGI 374

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDA 252
            P     + +  L+   C+ G LE A
Sbjct: 375 EPRVDHYSCMVDLL---CRAGKLERA 397



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           TA ++  ++ G +  AE+ F   P K   T+N ++AGY     A   L   R +      
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYAR---APGRLADARHLFDRIPT 77

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  S +++LL C   S    G    + +F S   +D  +   ++S   K G +E+A  +
Sbjct: 78  PDVVSYNTLLL-CHFASGDADGA---RRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVV 133

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           FL +  ++ V+WNAM+SG+A  G    A   F   ++   K D++ + A++      G V
Sbjct: 134 FLAMPVRNSVSWNAMVSGFACSGDMSTAEEWF---RNAPEKEDAVLWTAMVSGYMDIGNV 190

Query: 316 DLGIQYFDSM 325
              I+YF++M
Sbjct: 191 VKAIKYFEAM 200



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 144/333 (43%), Gaps = 42/333 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI-MLSCILLNSDDVVAAF 59
           M V+  V+WN+V+AG+ K      DA  LF  + +   V  N   LS +LL   + ++A 
Sbjct: 200 MPVRNLVSWNAVVAGYVKN-SHADDALRLFRTMVREANVQPNASTLSSVLLGCSN-LSAL 257

Query: 60  DFFQR--------LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            F ++        L  ++     +++S + +  +++ A  LF  M  ++ V+W+AMISGY
Sbjct: 258 GFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGY 317

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKN 162
            + G   +A+ LF+    + V    + +  +++  +  G  D   + F+ M         
Sbjct: 318 AQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPR 377

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVH 221
           +  ++ M+         E  +  +R M      P+ S+  ++L  C    +L+  +    
Sbjct: 378 VDHYSCMVDLLCRAGKLERAVDFIRSM---PFEPHPSAYGTLLAACRVYKNLEFAELAAG 434

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV-----TW---NAMISG 273
           +L+ K P  +   A   L ++Y      +D  ++   ++   VV     +W     ++  
Sbjct: 435 KLIEKDP--QSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHE 492

Query: 274 YAQHGK--------GEKALRLFDKMKDEGMKPD 298
           +  + +         EK  +L ++MK+ G  PD
Sbjct: 493 FRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPD 525


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/574 (56%), Positives = 411/574 (71%), Gaps = 6/574 (1%)

Query: 2   NVKTTVNWNSVLAGFAKQRG--KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
            +KTT  +N +LAG+AK  G  +L DA+ LFD IP PD VSYN +LSC      D+  A+
Sbjct: 34  QLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFA-CGDIDGAW 92

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F  +P++D  SWNTM+SG  +   + +A  +F AMP +N+VSW+AM++     G +  
Sbjct: 93  RVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGA 152

Query: 120 AVELFKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           A  LF+ AP K+  + WTAM+SGYM  G V  A + F  MP +NLV+WNA++AGYV+NS 
Sbjct: 153 AENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSR 212

Query: 179 AEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
           A D L++ + M+   I +PN S+LSSVLLGCS+LS+L  G+QVHQ   K PL +  T  T
Sbjct: 213 AGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGT 272

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            L+SMYCKCGDL+DACKLF E+  KD+V WNAMISGYAQHG G KA++LF+KMKDEG+ P
Sbjct: 273 SLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVP 332

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D IT +A+L AC H GL D GIQ F++M   Y I  + DHY+CMVDLL RAG L  AV++
Sbjct: 333 DWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNM 392

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I  MPF+P P+ +GTLL+ACRV+K L+ AEFAA  L   +P N AG YVQLANIYA   +
Sbjct: 393 IHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQN-AGAYVQLANIYAVANR 451

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           WDDV+R+R  MK+N VVK PGYSW+E+  V HEFRS DR+HP+L  IH+KL  L K MK 
Sbjct: 452 WDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKA 511

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
            GY PDL+FALH V E +K Q+L+ HSEKLAIAFGLI    G  +R+FKNLR+CGDCH A
Sbjct: 512 MGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNA 571

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K IS IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 572 AKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 129/278 (46%), Gaps = 34/278 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVA-- 57
           M V+  V+WN+V+AG+ K   +  DA  +F  + +  +V  N   LS +LL   ++ A  
Sbjct: 192 MPVRNLVSWNAVVAGYVKN-SRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALG 250

Query: 58  ----AFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  +  +LP+  + +  T ++S + +  ++  A  LF  M  K+ V+W+AMISGY 
Sbjct: 251 FGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYA 310

Query: 113 ECGQLDKAVELFKVAPVKSVVA-WT---AMISGYMKFGKVDLAEKLFDEMPTKNLVT--- 165
           + G   KA++LF+    + VV  W    A+++  +  G  D   + F+ M     +    
Sbjct: 311 QHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQV 370

Query: 166 --WNAMI-----AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             ++ M+     AG +E        + + M+  +   P+ S+  ++L  C    +L+  +
Sbjct: 371 DHYSCMVDLLCRAGLLE--------RAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAE 422

Query: 219 -QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
               +L+ + P  ++  A   L ++Y      +D  ++
Sbjct: 423 FAARKLIEQDP--QNAGAYVQLANIYAVANRWDDVSRV 458



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 33/337 (9%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           AE+ F     K   T+N ++AGY + S     L   R +      P+A S ++ LL C H
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKAS-GPGRLADARRLFDSIPHPDAVSYNT-LLSC-H 82

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            +   +       VF +   +D T+   ++S   K G +E+A  +F  +  ++ V+WNAM
Sbjct: 83  FACGDIDGAWR--VFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAM 140

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ++  A  G    A  LF   ++   K D+I + A++      G V   ++YF +M     
Sbjct: 141 VAARASSGDMGAAENLF---RNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNL 197

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLA 386
           ++     +  +V    +  +  +A+ + K M      +P P+   ++L  C     L   
Sbjct: 198 VS-----WNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFG 252

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
                    L    +      L ++Y      DD  ++   M   ++V    ++ +  G 
Sbjct: 253 RQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIV---AWNAMISGY 309

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
             H    G R          K  +L ++MK  G VPD
Sbjct: 310 AQH---GGGR----------KAIKLFEKMKDEGVVPD 333



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 76/330 (23%)

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQH---GKGEKALRLFDKMKDEGMKPDSITFVA 304
           DL  A + F   Q K   T+N +++GYA+    G+   A RLFD +      PD++++  
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIP----HPDAVSY-N 76

Query: 305 LLLACNHA-GLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            LL+C+ A G +D   + F +M V D         +  MV  L + G + EA  + + MP
Sbjct: 77  TLLSCHFACGDIDGAWRVFSTMPVRDV------TSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA--------AGCYVQLANIYAA 414
              + A+    + A R     D+   AA NLF   P              Y+   N+  A
Sbjct: 131 --ARNAVSWNAMVAARASSG-DMG--AAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKA 185

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSW-IEVGTVVHEFRSGD--RVHPELVSIHEKLKEL 471
           M+ +        +M   N+V     SW   V   V   R+GD  RV   +V         
Sbjct: 186 MEYFR-------AMPVRNLV-----SWNAVVAGYVKNSRAGDALRVFKTMV--------- 224

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG------LIKVPLGTPIRVF 525
                        E A+          +LL  S   A+ FG       +K+PLG  I V 
Sbjct: 225 -------------EDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVG 271

Query: 526 KNLRV----CGDCHRATKYISAIEKREIIV 551
            +L      CGD   A K    +  ++I+ 
Sbjct: 272 TSLLSMYCKCGDLDDACKLFDEMHTKDIVA 301


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/579 (56%), Positives = 422/579 (72%), Gaps = 13/579 (2%)

Query: 4   KTTVNWNSVLAGFAK------QRGKL-KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV 56
           KTT ++N +LAG+A+      +R +L  DA+ LFD+IP+PD VSYN +LSC    + DV 
Sbjct: 41  KTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSC-HFAAGDVR 99

Query: 57  AAFDFFQRLPI--KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            A D F  +P   ++  SWNTM+SG  +   + +AR +FLAMP +NS+SW+AM+S +   
Sbjct: 100 GARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHA 159

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           G +  A E F+ AP K + V WTAM+SGYM  G V+ A + F+ MP ++LV+WNA++AGY
Sbjct: 160 GDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGY 219

Query: 174 VENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           V+NS AED L + + M+    +RPN S+LSSVLLGCS+LS+L  G+QVHQ   K PL + 
Sbjct: 220 VKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRR 279

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
            TA T L+SMYCKCGDL+ ACKLF E++ +DV+ WNAMISGYA HG G +A+ LF+KMK 
Sbjct: 280 VTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKS 339

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G++P+ ITFVA+L AC H G+ D G+Q F+ M   YGI A+ DHY+CMVDLL RAG L 
Sbjct: 340 QGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLE 399

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            AV LI+ MPF+P P+ +GTLL+A RV+K ++ AEFAA  L   NP N AG YVQLANIY
Sbjct: 400 RAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQN-AGAYVQLANIY 458

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A   +W DV+R+R  MK+N VVK PGYSW+E+  V+H FRS DR+HP+L  IHE+L +LE
Sbjct: 459 AVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLE 518

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           +RMK  GYVPDL+FALH V E +K Q+L+ HSEKLAIAFGL+    G  +R+FKNLRVCG
Sbjct: 519 ERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCG 578

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K IS IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 579 DCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 148/332 (44%), Gaps = 40/332 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCILLNSDDVVA-- 57
           M V++ V+WN+V+AG+ K   + +DA  +F   +   DV      LS +LL   ++ A  
Sbjct: 204 MPVRSLVSWNAVVAGYVKN-SRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALG 262

Query: 58  ----AFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  +  +LP+ +   +  +++S + +  ++  A  LF  M  ++ ++W+AMISGY 
Sbjct: 263 FGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYA 322

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKNL 163
             G   +A+ELF+    + V    + + A+++  +  G  D   + F+ M         +
Sbjct: 323 HHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARV 382

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQ 222
             ++ M+         E  + L+R M     +P+ S+  ++L       +++  +    +
Sbjct: 383 DHYSCMVDLLCRAGSLERAVSLIRSM---PFQPHPSAYGTLLNASRVYKNMEFAEFAAGK 439

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV-----TW---NAMISGY 274
           L+ ++P  ++  A   L ++Y       D  ++   ++   VV     +W   N +I  +
Sbjct: 440 LIEQNP--QNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVF 497

Query: 275 AQHGK--------GEKALRLFDKMKDEGMKPD 298
             + +         E+  +L ++MK  G  PD
Sbjct: 498 RSNDRLHPQLSLIHERLCQLEERMKAMGYVPD 529


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/574 (56%), Positives = 411/574 (71%), Gaps = 6/574 (1%)

Query: 2   NVKTTVNWNSVLAGFAKQRG--KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
            +KTT  +N +LAG+AK  G  +L DA+ LFD IP PD VSYN +LSC      D+  A 
Sbjct: 39  QLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSC-HFACGDIDGAR 97

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F  +P+KD  SWNTM+SG  +     +A  +F  MP +N+VSW+AM++     G +  
Sbjct: 98  RVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGA 157

Query: 120 AVELFKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           A +LF+ AP K+  + WTAM+SGYM  G V  A + F  MP +NLV+WNA++AGYV+NS 
Sbjct: 158 AEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSR 217

Query: 179 AEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
           A+D L++ + M+   I +PNAS+LSSVLLGCS+LS+L  G+QVHQ   K PL ++ T  T
Sbjct: 218 ADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGT 277

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            L+SMYCKCGDL DACK+F E+  KD+V WNAMISGYAQHG G +A++LF+KMKDEG+ P
Sbjct: 278 SLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVP 337

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D IT +A+L AC H GL D GIQ F++M   Y I  + DHY+CMVDLL RAG L  AV++
Sbjct: 338 DWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNM 397

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I  MPF+P P+ +GTLL+ACRV+K L+ AEFAA  L   +P N AG YVQLANIYA   K
Sbjct: 398 IHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQN-AGAYVQLANIYAVANK 456

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W DV+R+R  MK+N VVK PGYSW+E+  V HEFRS DR+HP+L  IH+KL  L+  MK 
Sbjct: 457 WADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKA 516

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
            GYVPDL+FALH V + +K Q+L+ HSEKLAIAFGLI    G  +R+FKNLR+CGDCH A
Sbjct: 517 MGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNA 576

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K IS IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 577 AKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 124/266 (46%), Gaps = 34/266 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI-MLSCILLNSDDVVA-- 57
           M V+  V+WN+V+AG+ K   +  DA  +F  + +  +V  N   LS +LL   ++ A  
Sbjct: 197 MPVRNLVSWNAVVAGYVKN-SRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALG 255

Query: 58  ----AFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  +  +LP+    +  T ++S + +  ++  A  +F  M  K+ V+W+AMISGY 
Sbjct: 256 FGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315

Query: 113 ECGQLDKAVELFKVAPVKSVVA-WT---AMISGYMKFGKVDLAEKLFDEMPTKNLVT--- 165
           + G   +A++LF+    + VV  W    A+++  +  G  D   + F+ M     +    
Sbjct: 316 QHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQI 375

Query: 166 --WNAMI-----AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             ++ M+     AG +E        + + M+  +   P+ S+  ++L  C    +L+  +
Sbjct: 376 DHYSCMVDLLCRAGLLE--------RAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAE 427

Query: 219 -QVHQLVFKSPLCKDTTALTPLISMY 243
               +L+ + P  ++  A   L ++Y
Sbjct: 428 FAARKLIEQDP--QNAGAYVQLANIY 451



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL---RMMIGL 192
           T  ++  ++ G +  AE+ F     K   T+N ++AGY + S    GL  L   R +   
Sbjct: 16  TVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKAS----GLIRLADARRLFDS 71

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              P+  S ++ LL C H +   +     + VF +   KD T+   ++S   K G  E+A
Sbjct: 72  IPHPDTVSYNT-LLSC-HFACGDIDGA--RRVFSTMPVKDVTSWNTMVSGLSKNGASEEA 127

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             +F  +  ++ V+WNAM++  A  G    A  LF   ++   K D+I + A++      
Sbjct: 128 AAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLF---RNAPEKTDAILWTAMVSGYMDT 184

Query: 313 GLVDLGIQYFDSM 325
           G V   +++F +M
Sbjct: 185 GNVQKAMEFFGAM 197



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 43/221 (19%)

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHG---KGEKALRLFDKMKDEGMKPDSITFV 303
           GDL  A + F   Q K   T+N +++GYA+     +   A RLFD +      PD++++ 
Sbjct: 26  GDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIP----HPDTVSY- 80

Query: 304 ALLLACNHA-GLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             LL+C+ A G +D   + F +M V D         +  MV  L + G   EA  + + M
Sbjct: 81  NTLLSCHFACGDIDGARRVFSTMPVKDV------TSWNTMVSGLSKNGASEEAAAMFRIM 134

Query: 362 P--------------------------FKPQPAIFGTLLSACRVHKRLDLAEFA-AMNLF 394
           P                          F+  P     +L    V   +D      AM  F
Sbjct: 135 PVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFF 194

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
              P      +  +   Y    + DD  R+  +M E+++V+
Sbjct: 195 GAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQ 235


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/552 (61%), Positives = 408/552 (73%), Gaps = 34/552 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K T+ WNS+L G +K   ++ +A +LFD+IP+PD  SYNIMLSC + N +    A  
Sbjct: 87  MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQS 145

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF R+P KD ASWNTMI+G+ ++  M KAR+LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWA 179
              FKVAPV+ VVAWTAMI+GYMK  KV+LAE +F +M   KNLVTWNAMI+GYVENS  
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           EDGLKL R M+  GIRPN+S LSS LLGC+                          LT L
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCT--------------------------LTSL 299

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           ISMYCKCG+L DA KLF  +++KDVV WNAMISGYAQHG  +KAL LF +M D  ++PD 
Sbjct: 300 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 359

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           ITFVA+LLACNHAGLV++G+ YF+SMV DY +  +PDHYTCMVDLLGRAGKL EA+ LI+
Sbjct: 360 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 419

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MPF+P  A+FGTLL ACRVHK ++LAEFAA  L  LN  NAAG YVQLANIYA+  +W+
Sbjct: 420 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWE 478

Query: 420 DVARIRLSMKENNV-----VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
           DVAR+R  MKE+NV     VK+PGYSWIE+   VH FRS DR+HPEL SIH+KLKELEK+
Sbjct: 479 DVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKK 538

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           MKLAGY P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+ I+VFKNLR+C   
Sbjct: 539 MKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICASG 598

Query: 535 HRATKYISAIEK 546
            R   +  A  +
Sbjct: 599 SRVLDHFPATSR 610


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/502 (56%), Positives = 365/502 (72%), Gaps = 4/502 (0%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PD VSYN +LSC    S D   A   F 
Sbjct: 46  KTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSC-HFASGDADGARRLFA 104

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D  SWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+     +  A E 
Sbjct: 105 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEW 164

Query: 124 FKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           F+ AP K   V WTAM+SGYM  G V  A + F+ MP +NLV+WNA++AGYV+NS A+D 
Sbjct: 165 FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 183 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K PL ++ T  T L+S
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MYCKCGDL  ACKLF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FVA+L AC H GL D GI+ F+ M   YGI  + DHY+CMVDLL RAGKL  AVDLI+ M
Sbjct: 345 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAGANQWDDV 463

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 464 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYV 523

Query: 482 PDLEFALHAVGEEVKEQLLLFH 503
           PDL+F LH V E +K Q+L+ H
Sbjct: 524 PDLDFVLHDVDETLKVQMLMRH 545



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 19/270 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA  R  +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 137 MPVRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSG-YMDIGNVVKAI 194

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV--SWSAMISGYIECGQL 117
           ++F+ +P+++  SWN +++G+V+  +   A  LF  M  + +V  + S + S  + C  L
Sbjct: 195 EYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 254

Query: 118 D-----KAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
                 K +  +  K+   +++   T+++S Y K G +  A KLF EM T+++V WNAMI
Sbjct: 255 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 314

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFK 226
           +GY ++   ++ + L   M   G+ PN  +  +VL  C H      G    + + +L   
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGI 374

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            P     + +  L+   C+ G LE A  L 
Sbjct: 375 EPRVDHYSCMVDLL---CRAGKLERAVDLI 401



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVAL 305
           GDL  A + F    RK   T+N +++GYA+  G+   A  LFD++      PD++++  L
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSYNTL 86

Query: 306 LLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           L     +G  D   + F SM V D         +  MV  L ++G + EA  +   MP +
Sbjct: 87  LSCHFASGDADGARRLFASMPVRDV------VSWNTMVSGLSKSGAVEEAKAVFLAMPVR 140


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/565 (48%), Positives = 382/565 (67%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ G+ K R +L DA+ +FD++P+ D VS+N M+S    N + ++ A   F+  P
Sbjct: 205 ISWNCMMGGYVK-RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE-LLEAQRLFEESP 262

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+SG+VQ   + +AR +F  MPEKNSVSW+A+I+GY++C ++D+A ELF+ 
Sbjct: 263 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 322

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V +W  MI+GY + G +  A   FD MP ++ ++W A+IAGY ++ + E+ L L 
Sbjct: 323 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G R N S+ +S L  C+ +++L+LGKQVH  V K+ L         L+ MYCKC
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 442

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G+++DA  +F  I+ K+VV+WN MI+GYA+HG G++AL LF+ MK  G+ PD +T V +L
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD G +YF SM  DYGI A   HYTCM+DLLGRAG+L +A +L+K MPF+P 
Sbjct: 503 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 562

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N +G YV L+N+YAA  +W DV R+RL
Sbjct: 563 AATWGALLGASRIHGNTELGEKAAKMIFEMEPDN-SGMYVLLSNLYAASGRWGDVGRMRL 621

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSW+EV   +H F  GD VHPE   I+  L+EL+ +MK  GYV   + 
Sbjct: 622 RMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKL 681

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE K  +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 682 VLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVG 741

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD+ RFHHF  G CSCGDYW
Sbjct: 742 RLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 189/379 (49%), Gaps = 66/379 (17%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN  +    +  G+   A  LF+ +P+   +S+N M+S  L N D    A   F+++P
Sbjct: 50  VKWNIAITNHMRN-GQCDSALRLFNSMPRRSSISWNAMISGCLSN-DKFYLARQLFEKMP 107

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN MISG V+ +N+  AR LF  MPE++ VSW+AM+SGY + G + +A E+F  
Sbjct: 108 TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKL-------------------------------F 155
            P K+ ++W  M++ Y++ G+++ A +L                               F
Sbjct: 168 MPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIF 227

Query: 156 DEMPTKNLVTWNAMIAGYVEN--------------------------SWAEDGL--KLLR 187
           D MP ++ V+WN MI+GY +N                           + ++G+  +  R
Sbjct: 228 DRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARR 287

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +  G+    N+ S ++++ G      +   ++    +F++  C++ ++   +I+ Y + G
Sbjct: 288 VFDGM-PEKNSVSWNAIIAGYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNG 342

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           D+  A   F  + ++D ++W A+I+GYAQ G GE+AL LF +MK +G + +  TF + L 
Sbjct: 343 DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 402

Query: 308 ACNHAGLVDLGIQYFDSMV 326
            C     ++LG Q    +V
Sbjct: 403 TCAEIAALELGKQVHGRVV 421



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 185/363 (50%), Gaps = 22/363 (6%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   WN  I+  ++      A  LF +MP ++S+SW+AMISG +   +   A +LF+  P
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + +V+W  MISG +++  +  A  LFD+MP +++V+WNAM++GY +N + ++  ++   
Sbjct: 108 TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M      P  +S+S   +  +++ + ++  +  + +F+S    +  +   ++  Y K   
Sbjct: 168 M------PCKNSISWNGMLAAYVQNGRI--EDARRLFESKADWELISWNCMMGGYVKRNR 219

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L DA  +F  +  +D V+WN MISGYAQ+G+  +A RLF    +E    D  T+ A++  
Sbjct: 220 LVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSG 275

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
               G++D   + FD M     ++     +  ++    +  ++ +A +L + MP +   +
Sbjct: 276 YVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVS 329

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
            + T+++     +  D+A+  A N F+  P   +  +  +   YA     ++   + + M
Sbjct: 330 SWNTMITG--YAQNGDIAQ--ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 429 KEN 431
           K +
Sbjct: 386 KRD 388



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 160/320 (50%), Gaps = 22/320 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K +V+WN+++AG+ + + ++  A+ELF+ +P  +V S+N M++    N  D+  A +
Sbjct: 292 MPEKNSVSWNAIIAGYVQCK-RMDQARELFEAMPCQNVSSWNTMITGYAQNG-DIAQARN 349

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDK 119
           FF R+P +D+ SW  +I+G+ Q     +A  LF+ M  +   ++ S   S    C ++  
Sbjct: 350 FFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI-A 408

Query: 120 AVELFKVAPVKSVVA--------WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           A+EL K    + V A          A++  Y K G +D A  +F+ +  K +V+WN MIA
Sbjct: 409 ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 468

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLC 230
           GY  + + ++ L L   M   GI P+  ++  VL  CSH   +  G +  + +     + 
Sbjct: 469 GYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGIT 528

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKALRL 286
            ++   T +I +  + G L+DA  L   +    D  TW A++     HG    GEKA ++
Sbjct: 529 ANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKM 588

Query: 287 FDKMKDEGMKPDSITFVALL 306
             +     M+PD+     LL
Sbjct: 589 IFE-----MEPDNSGMYVLL 603


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/565 (48%), Positives = 382/565 (67%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ G+ K R +L DA+ +FD++P+ D VS+N M+S    N + ++ A   F+  P
Sbjct: 124 ISWNCMMGGYVK-RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE-LLEAQRLFEESP 181

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+SG+VQ   + +AR +F  MPEKNSVSW+A+I+GY++C ++D+A ELF+ 
Sbjct: 182 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 241

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V +W  MI+GY + G +  A   FD MP ++ ++W A+IAGY ++ + E+ L L 
Sbjct: 242 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 301

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G R N S+ +S L  C+ +++L+LGKQVH  V K+ L         L+ MYCKC
Sbjct: 302 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 361

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G+++DA  +F  I+ K+VV+WN MI+GYA+HG G++AL LF+ MK  G+ PD +T V +L
Sbjct: 362 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 421

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD G +YF SM  DYGI A   HYTCM+DLLGRAG+L +A +L+K MPF+P 
Sbjct: 422 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 481

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N +G YV L+N+YAA  +W DV R+RL
Sbjct: 482 AATWGALLGASRIHGNTELGEKAAKMIFEMEPDN-SGMYVLLSNLYAASGRWGDVGRMRL 540

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSW+EV   +H F  GD VHPE   I+  L+EL+ +MK  GYV   + 
Sbjct: 541 RMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKL 600

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE K  +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 601 VLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVG 660

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD+ RFHHF  G CSCGDYW
Sbjct: 661 RLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 176/338 (52%), Gaps = 35/338 (10%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM 76
           AK+  +L+         P+ D +  + +  C+     ++ AA   F ++P +D  SWN M
Sbjct: 10  AKRTMRLRSPPLQLHASPEFDFLERHDLRGCVRYR--NLRAARLLFDQMPERDVVSWNAM 67

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           +SG+ Q   + +A+++F  MP KNS+SW+ M++ Y++ G+++ A  LF+      +++W 
Sbjct: 68  LSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWN 127

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-------------------- 176
            M+ GY+K  ++  A  +FD MP ++ V+WN MI+GY +N                    
Sbjct: 128 CMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFT 187

Query: 177 ------SWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
                  + ++G+  +  R+  G+    N+ S ++++ G      +   ++    +F++ 
Sbjct: 188 WTAMVSGYVQNGMLDEARRVFDGM-PEKNSVSWNAIIAGYVQCKRMDQARE----LFEAM 242

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
            C++ ++   +I+ Y + GD+  A   F  + ++D ++W A+I+GYAQ G GE+AL LF 
Sbjct: 243 PCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFV 302

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +MK +G + +  TF + L  C     ++LG Q    +V
Sbjct: 303 EMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV 340



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 160/320 (50%), Gaps = 22/320 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K +V+WN+++AG+ + + ++  A+ELF+ +P  +V S+N M++    N  D+  A +
Sbjct: 211 MPEKNSVSWNAIIAGYVQCK-RMDQARELFEAMPCQNVSSWNTMITGYAQNG-DIAQARN 268

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDK 119
           FF R+P +D+ SW  +I+G+ Q     +A  LF+ M  +   ++ S   S    C ++  
Sbjct: 269 FFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI-A 327

Query: 120 AVELFKVAPVKSVVA--------WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           A+EL K    + V A          A++  Y K G +D A  +F+ +  K +V+WN MIA
Sbjct: 328 ALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIA 387

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLC 230
           GY  + + ++ L L   M   GI P+  ++  VL  CSH   +  G +  + +     + 
Sbjct: 388 GYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGIT 447

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKALRL 286
            ++   T +I +  + G L+DA  L   +    D  TW A++     HG    GEKA ++
Sbjct: 448 ANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKM 507

Query: 287 FDKMKDEGMKPDSITFVALL 306
             +     M+PD+     LL
Sbjct: 508 IFE-----MEPDNSGMYVLL 522


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/565 (47%), Positives = 390/565 (69%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   P
Sbjct: 194 ISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAAP 251

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF +
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V +W  M++GY + G ++ A+ +FD MP K+ V+W AM+A Y +   +E+ L+L 
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY KC
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +L
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 491

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P 
Sbjct: 492 AACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPD 551

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW D  ++R+
Sbjct: 552 STMWGALLGASRIHRNPELGRSAAEKIFELEPENA-GMYVLLSNIYASSGKWRDARKMRV 610

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   + 
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A KYISAIE 
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 730

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R I++RD+ RFHHF+ G+CSCGDYW
Sbjct: 731 RLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 186/325 (57%), Gaps = 14/325 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++T  +N++LAG++   G+L  A  LF  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 64  MPRRSTSTYNAMLAGYSAN-GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS-LADARG 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D+ ++N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++++A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF       V++W A++SGY+++GK+  A +LFD MP +++V+WN M++GY       
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG--- 238

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           D ++  R+     +R +  + ++V+ G +    L+  ++    VF +   ++  +   ++
Sbjct: 239 DMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARR----VFDAMPERNAVSWNAMV 293

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           + Y +   +++A +LF  +  ++V +WN M++GYAQ G  E+A  +FD M     + D++
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAV 349

Query: 301 TFVALLLACNHAGLVDLGIQYFDSM 325
           ++ A+L A +  G  +  +Q F  M
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEM 374



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 175/374 (46%), Gaps = 70/374 (18%)

Query: 21  GKLKDAQE-------------------------------LFDKIPQPDVVSYNIMLSCIL 49
           G++ DA+                                LF  IP+PD  SYN +L  + 
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 50  LNSD--DVVAAFD----------------------------FFQRLPIKDTASWNTMISG 79
           ++S   D    FD                            +F   P KD  SWN M++ 
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAA 171

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           +V+   + +AR LF +  E + +SW+A++SGY++ G++ +A ELF   P + VV+W  M+
Sbjct: 172 YVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMV 231

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           SGY + G +  A +LFD  P +++ TW A+++GY +N   E+  ++   M      P  +
Sbjct: 232 SGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERN 285

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           ++S   +  +++    + +   + +F    C++  +   +++ Y + G LE+A  +F  +
Sbjct: 286 AVSWNAMVAAYIQRRMMDEA--KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            +KD V+W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+
Sbjct: 344 PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGM 403

Query: 320 QYFDSMVN-DYGIA 332
           Q    ++   YG+ 
Sbjct: 404 QLHGRLIRAGYGVG 417



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 24/333 (7%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +P+V+  N  ++   + +  V  A   F  +P + T+++N M++G+     +  A  LF 
Sbjct: 35  EPEVIRSNKAITA-HMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
           A+P  ++ S++ ++        L  A  LF   PV+  V +  MIS +   G V LA   
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS- 213
           FD  P K+ V+WN M+A YV N   E+   L           N+ +   V+   + +S  
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----------NSRTEWDVISWNALMSGY 203

Query: 214 LQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           +Q GK  +  +L  + P  +D  +   ++S Y + GD+ +A +LF     +DV TW A++
Sbjct: 204 VQWGKMSEARELFDRMP-GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGYAQ+G  E+A R+FD M +     +++++ A++ A     ++D   + F+ M+    +
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MMPCRNV 317

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           A+    +  M+    +AG L EA  +   MP K
Sbjct: 318 AS----WNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/566 (47%), Positives = 390/566 (68%), Gaps = 3/566 (0%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   
Sbjct: 193 AISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAA 250

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           P++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF 
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
           + P ++V +W  M++GY + G ++ A+ +FD MP K+ V+W AM+A Y +   +E+ L+L
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQL 370

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY K
Sbjct: 371 FIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFK 430

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           CG++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +
Sbjct: 431 CGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGV 490

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P
Sbjct: 491 LAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
              ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW D  ++R
Sbjct: 551 DSTMWGALLGASRIHRNPELGRSAAEKIFELEPENA-GMYVLLSNIYASSGKWRDARKMR 609

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
           + M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   +
Sbjct: 610 VMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATD 669

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
             LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A KYISAIE
Sbjct: 670 MVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIE 729

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            R I++RD+ RFHHF+ G+CSCGDYW
Sbjct: 730 GRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 185/325 (56%), Gaps = 14/325 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++T  +N++LAG++   G+L  A  LF  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 64  MPRRSTSTYNAMLAGYSAN-GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS-LADARG 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D+ ++N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++++A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF        ++W A++SGY+++GK+  A +LFD MP +++V+WN M++GY       
Sbjct: 182 RGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG--- 238

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           D ++  R+     +R +  + ++V+ G +    L+  ++    VF +   ++  +   ++
Sbjct: 239 DMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARR----VFDAMPERNAVSWNAMV 293

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           + Y +   +++A +LF  +  ++V +WN M++GYAQ G  E+A  +FD M     + D++
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP----QKDAV 349

Query: 301 TFVALLLACNHAGLVDLGIQYFDSM 325
           ++ A+L A +  G  +  +Q F  M
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEM 374



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 166/332 (50%), Gaps = 22/332 (6%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +P+V+  N  ++   + +  V  A   F  +P + T+++N M++G+     +  A  LF 
Sbjct: 35  EPEVIRSNKAITA-HMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
           A+P  ++ S++ ++        L  A  LF   PV+  V +  MIS +   G V LA   
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD  P K+ V+WN M+A YV N   E+     R +       +A S ++++ G      +
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDAISWNALMSG-----YV 204

Query: 215 QLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           Q GK  +  +L  + P  +D  +   ++S Y + GD+ +A +LF     +DV TW A++S
Sbjct: 205 QWGKMSEARELFDRMP-GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVS 263

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           GYAQ+G  E+A R+FD M +     +++++ A++ A     ++D   + F+ M+    +A
Sbjct: 264 GYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MMPCRNVA 318

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +    +  M+    +AG L EA  +   MP K
Sbjct: 319 S----WNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/565 (47%), Positives = 390/565 (69%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   P
Sbjct: 69  ISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAAP 126

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF +
Sbjct: 127 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 186

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V +W  M++GY + G ++ A+ +FD MP K+ V+W AM+A Y +   +E+ L+L 
Sbjct: 187 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 246

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY KC
Sbjct: 247 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 306

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +L
Sbjct: 307 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 366

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P 
Sbjct: 367 AACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPD 426

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW D  ++R+
Sbjct: 427 STMWGALLGASRIHRNPELGRSAAEKIFELEPENA-GMYVLLSNIYASSGKWRDARKMRV 485

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   + 
Sbjct: 486 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 545

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A KYISAIE 
Sbjct: 546 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 605

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R I++RD+ RFHHF+ G+CSCGDYW
Sbjct: 606 RLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 49/249 (19%)

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           PV+  V +  MIS +   G V LA   FD  P K+ V+WN M+A YV N   E+   L  
Sbjct: 2   PVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGL-- 59

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
                                                F S    D  +   L+S Y + G
Sbjct: 60  -------------------------------------FNSRTEWDVISWNALMSGYVQWG 82

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            + +A +LF  +  +DVV+WN M+SGYA+ G   +A RLFD         D  T+ A++ 
Sbjct: 83  KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVS 138

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
                G+++   + FD+M     ++     +  MV    +   + EA +L   MP +   
Sbjct: 139 GYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCR-NV 192

Query: 368 AIFGTLLSA 376
           A + T+L+ 
Sbjct: 193 ASWNTMLTG 201



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           KD  +   +++ Y + G +E+A  LF      DV++WNA++SGY Q GK  +A  LFD+M
Sbjct: 35  KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM 94

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAG 349
                  D +++  ++      G +    + FD+  V D         +T +V    + G
Sbjct: 95  PGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT------WTAVVSGYAQNG 144

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA  +   MP   + A+    + A  + +R+ + E  A  LFN+ P      +  + 
Sbjct: 145 MLEEARRVFDAMP--ERNAVSWNAMVAAYIQRRM-MDE--AKELFNMMPCRNVASWNTML 199

Query: 410 NIYAAMKKWDDVARIRLSMKENNVV 434
             YA     ++   +  +M + + V
Sbjct: 200 TGYAQAGMLEEAKAVFDTMPQKDAV 224


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/565 (48%), Positives = 380/565 (67%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WN +L GF K++ K+ +A++ FD +   DVVS+N +++    N + +  A   F   P
Sbjct: 215 VSWNCLLGGFVKKK-KIVEARQFFDSMKVRDVVSWNTIITGYAQNGE-IDEARQLFDESP 272

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           + D  +W  M+SG++Q + + +AR+LF  MPE+N VSW+AM++GY++  +++ A ELF V
Sbjct: 273 VHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDV 332

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V  W  MI+GY + GK+  A+ LFD+MP ++ V+W AMIAGY ++  + + L+L 
Sbjct: 333 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLF 392

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
            +M   G R N SS SS L  C+ + +L+LGKQ+H  + K            L+ MYCKC
Sbjct: 393 VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 452

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A  LF E+  KD+V+WN MI+GY++HG GE+ALR F+ MK EG+KPD  T VA+L
Sbjct: 453 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL 512

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD G QYF +M  DYG+     HY CMVDLLGRAG L EA +L+K MPF+P 
Sbjct: 513 SACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPD 572

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            AI+GTLL A RVH   +LAE AA  +F + P N+ G YV L+N+YA+  +W DV ++R+
Sbjct: 573 AAIWGTLLGASRVHGNTELAETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRV 631

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSWIE+    H F  GD  HPE   I   L++L+ RMK AGYV     
Sbjct: 632 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSV 691

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE+++ +HSE+LA+A+G+++V  G PIRV KNLRVC DCH A KY++ +  
Sbjct: 692 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTG 751

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD  RFHHFKDG+CSCGDYW
Sbjct: 752 RLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 212/391 (54%), Gaps = 42/391 (10%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++V++N++++G+ +  G+ + A+ LFD++P+ D+VS+N+M+   + N  ++  A + F+R
Sbjct: 89  SSVSYNAMISGYLRN-GEFELARMLFDEMPERDLVSWNVMIKGYVRNR-NLGKARELFER 146

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV--- 121
           +P +D  SWNT++SG+ Q   +  AR +F  MPEKN VSW+A++S Y++  +L++A    
Sbjct: 147 MPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF 206

Query: 122 ----------------------------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
                                       + F    V+ VV+W  +I+GY + G++D A +
Sbjct: 207 GSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQ 266

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LFDE P  ++ TW AM++GY++N   E+  +L   M       N  S +++L G      
Sbjct: 267 LFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGER 322

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           +++ K+    +F    C++ +    +I+ Y +CG + +A  LF ++ ++D V+W AMI+G
Sbjct: 323 VEMAKE----LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 378

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y+Q G   +ALRLF  M+ EG + +  +F + L  C     ++LG Q    +V   G   
Sbjct: 379 YSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYET 437

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                  ++ +  + G + EA DL K+M  K
Sbjct: 438 GCFVGNALLLMYCKCGSIEEANDLFKEMAGK 468



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 178/347 (51%), Gaps = 23/347 (6%)

Query: 32  KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
           K    D+  +N+ +S   + +     A   F+R+P   + S+N MISG+++      AR 
Sbjct: 53  KSGDSDIKEWNVAISS-YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARM 111

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF  MPE++ VSW+ MI GY+    L KA ELF+  P + V +W  ++SGY + G VD A
Sbjct: 112 LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDA 171

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCS 209
            ++FD MP KN V+WNA+++ YV+NS      KL    +  G R N +  S + +L G  
Sbjct: 172 RRVFDRMPEKNDVSWNALLSAYVQNS------KLEEACVLFGSRENWALVSWNCLLGGFV 225

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
               +   +Q     F S   +D  +   +I+ Y + G++++A +LF E    DV TW A
Sbjct: 226 KKKKIVEARQ----FFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTA 281

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           M+SGY Q+   E+A  LFD+M +     + +++ A+L        V++  + FD M    
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMP--- 334

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
                   +  M+    + GK+ EA +L  KMP K  P  +  +++ 
Sbjct: 335 --CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/565 (48%), Positives = 378/565 (66%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WN +L GF K++ K+ +A++ FD +   DVVS+N +++     S  +  A   F   P
Sbjct: 220 VSWNCLLGGFVKKK-KIVEARQFFDSMNVRDVVSWNTIITG-YAQSGKIDEARQLFDESP 277

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+SG++Q + + +AR+LF  MPE+N VSW+AM++GY++  +++ A ELF V
Sbjct: 278 VQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDV 337

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V  W  MI+GY + GK+  A+ LFD+MP ++ V+W AMIAGY ++  + + L+L 
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G R N SS SS L  C+ + +L+LGKQ+H  + K            L+ MYCKC
Sbjct: 398 VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 457

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A  LF E+  KD+V+WN MI+GY++HG GE ALR F+ MK EG+KPD  T VA+L
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD G QYF +M  DYG+     HY CMVDLLGRAG L +A +L+K MPF+P 
Sbjct: 518 SACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            AI+GTLL A RVH   +LAE AA  +F + P N+ G YV L+N+YA+  +W DV ++R+
Sbjct: 578 AAIWGTLLGASRVHGNTELAETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRV 636

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSWIE+    H F  GD  HPE   I   L+EL+ RMK AGYV     
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSV 696

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE+++ +HSE+LA+A+G+++V  G PIRV KNLRVC DCH A KY++ I  
Sbjct: 697 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITG 756

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD  RFHHFKDG+CSCGDYW
Sbjct: 757 RLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 230/431 (53%), Gaps = 45/431 (10%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++V++N +++G+ +  G+ + A++LFD++P+ D+VS+N+M+   + N  ++  A + F+ 
Sbjct: 94  SSVSYNGMISGYLRN-GEFELARKLFDEMPERDLVSWNVMIKGYVRNR-NLGKARELFEI 151

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P +D  SWNTM+SG+ Q   +  AR +F  MPEKN VSW+A++S Y++  ++++A  LF
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211

Query: 125 KVAP-------------------------------VKSVVAWTAMISGYMKFGKVDLAEK 153
           K                                  V+ VV+W  +I+GY + GK+D A +
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LFDE P +++ TW AM++GY++N   E+  +L   M       N  S +++L G      
Sbjct: 272 LFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGER 327

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           +++ K+    +F    C++ +    +I+ Y +CG + +A  LF ++ ++D V+W AMI+G
Sbjct: 328 MEMAKE----LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y+Q G   +ALRLF +M+ EG + +  +F + L  C     ++LG Q    +V   G   
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYET 442

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAM 391
                  ++ +  + G + EA DL K+M  K   + + T+++    H    + L  F +M
Sbjct: 443 GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEVALRFFESM 501

Query: 392 NLFNLNPANAA 402
               L P +A 
Sbjct: 502 KREGLKPDDAT 512



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 178/347 (51%), Gaps = 23/347 (6%)

Query: 32  KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
           K    D+  +N+ +S   + +     A   F+R+P   + S+N MISG+++      AR 
Sbjct: 58  KCGDSDIKEWNVAISS-YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARK 116

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF  MPE++ VSW+ MI GY+    L KA ELF++ P + V +W  M+SGY + G VD A
Sbjct: 117 LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDA 176

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCS 209
             +FD MP KN V+WNA+++ YV+NS  E+   L +       R N +  S + +L G  
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFV 230

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
               +   +Q     F S   +D  +   +I+ Y + G +++A +LF E   +DV TW A
Sbjct: 231 KKKKIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           M+SGY Q+   E+A  LFDKM +     + +++ A+L        +++  + FD M    
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMP--- 339

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
                   +  M+    + GK+ EA +L  KMP K  P  +  +++ 
Sbjct: 340 --CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/566 (47%), Positives = 386/566 (68%), Gaps = 3/566 (0%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            ++WN+++AG+  QR ++++AQ++F+K+PQ DVVS+N M+S       D+  A   F   
Sbjct: 262 AISWNALMAGYV-QRSQIEEAQKMFNKMPQRDVVSWNTMVSG-YARRGDMAEARRLFDVA 319

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           PI+D  +W  ++SG+ Q   + +A+ +F AMP+KN+VSW+AM++ Y++   +++A ELF 
Sbjct: 320 PIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFD 379

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
             P ++V +W  M++GY + G +D A  +F  MP K+ V+W AM+A Y +  ++E+ L+L
Sbjct: 380 AMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQL 439

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
            + M   G   N S+ + VL  C+ +++L+ G Q+H  + K+           L++MY K
Sbjct: 440 FKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFK 499

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           CG +E+A   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +
Sbjct: 500 CGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGV 559

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC+H+GLV+ GI YF SM  D+G+A KP+HYTCM+DLLGRAG+L EAV+L+K MPF+P
Sbjct: 560 LAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEP 619

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
              ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW DV ++R
Sbjct: 620 DSTMWGALLGASRIHRNSELGRNAAEKIFELEPENA-GMYVLLSNIYASSGKWRDVDKMR 678

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             M E  V K+PG+SWIEV   VH F  GD VHPE   I+  L++L+ RMK AGYV   +
Sbjct: 679 HIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATD 738

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
             LH V EE KE +L +HSEKLA+A+G++K+P G PIRV KNLRVC DCH A K ISAIE
Sbjct: 739 MVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIE 798

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            R II+RD+ RFHHF+DG+CSCGDYW
Sbjct: 799 GRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 186/329 (56%), Gaps = 22/329 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAA 58
           M  ++T  +N++LAG+A   G+L  A   F  IP+PD  SYN +L  + ++S   DV A 
Sbjct: 133 MPRRSTSTYNTMLAGYAAN-GRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRAL 191

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD    +P+KD+ S+N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++ 
Sbjct: 192 FD---EMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQ 248

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A ELF        ++W A+++GY++  +++ A+K+F++MP +++V+WN M++GY     
Sbjct: 249 EARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRG- 307

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             D  +  R+     IR +  + ++++ G +    L+  K+    VF +   K+  +   
Sbjct: 308 --DMAEARRLFDVAPIR-DVFTWTAIVSGYAQNGMLEEAKR----VFDAMPDKNAVSWNA 360

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP- 297
           +++ Y +   +E+A +LF  +  ++V +WN M++GYAQ G  ++A  +F      GM P 
Sbjct: 361 MMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIF------GMMPQ 414

Query: 298 -DSITFVALLLACNHAGLVDLGIQYFDSM 325
            D++++ A+L A +  G  +  +Q F  M
Sbjct: 415 KDAVSWAAMLAAYSQIGFSEETLQLFKEM 443



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 218/467 (46%), Gaps = 33/467 (7%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           P  +V+  N  ++   + +  V  A   F  +P + T+++NTM++G+     + +A   F
Sbjct: 103 PDMEVIRRNRAITA-HMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF 161

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
            ++P  +S S++ ++        L     LF   PVK  V++  MIS +   G V LA  
Sbjct: 162 RSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARH 221

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            FD  P K+ V+WN M+A YV N   ++  +L           +A S ++++ G    S 
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW----DAISWNALMAGYVQRSQ 277

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           ++   +  ++  K P  +D  +   ++S Y + GD+ +A +LF     +DV TW A++SG
Sbjct: 278 IE---EAQKMFNKMPQ-RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSG 333

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           YAQ+G  E+A R+FD M D+    +++++ A++ A     +++   + FD+M     +A+
Sbjct: 334 YAQNGMLEEAKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDAMPC-RNVAS 388

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
               +  M+    +AG L EA  +   MP K     +  +L+A   + ++  +E   + L
Sbjct: 389 ----WNTMLTGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA---YSQIGFSE-ETLQL 439

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS---WIEVGTVVHE 450
           F        G +V  +     +    D+A +   M+ ++ +   GY    ++    +   
Sbjct: 440 F--KEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMY 497

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           F+ G      +   H   +E+E+R  ++       +A H  G+E  E
Sbjct: 498 FKCGS-----MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALE 539


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/565 (46%), Positives = 381/565 (67%), Gaps = 4/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WN ++ G+ +++ +L DA+ LFD++P  D +S+NIM++    N   +  A   F+ LP
Sbjct: 216 VSWNCLMGGYVRKK-RLDDARSLFDRMPVRDKISWNIMITGYAQNGL-LSEARRLFEELP 273

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           I+D  +W  M+SGFVQ   + +A  +F  MPEKN VSW+AMI+GY++  Q++KA ELF  
Sbjct: 274 IRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++  +W  M++GY + G +D A+ LFDEMP ++ ++W AMI+GY ++  +E+ L L 
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+L+  L  C+ +++L+LGKQ+H  + K+       A   L++MY KC
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A  +F +I  KD+V+WN MI+GYA+HG G++AL LF+ MK   +KPD +T V +L
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVL 512

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD G++YF+SM  +YGI A   HYTCM+DLLGRAG+L EA++L+K MPF P 
Sbjct: 513 SACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPD 572

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N +G YV L+N+YAA  +W +V  +R 
Sbjct: 573 AATWGALLGASRIHGDTELGEKAAEKVFEMEPDN-SGMYVLLSNLYAASGRWREVREMRS 631

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSW+E+    H F  GD  HPE   I+  L+EL+  +K  G+V   + 
Sbjct: 632 KMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKL 691

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I +
Sbjct: 692 VLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQ 751

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R+IIVRD+ RFHHF +G+CSCGDYW
Sbjct: 752 RQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 198/366 (54%), Gaps = 46/366 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M  K  V+WN++L+GFA Q G +++A+++FD++   + +S+N +LS  + N   +D    
Sbjct: 148 MPEKDVVSWNAMLSGFA-QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRL 206

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD      I    SWN ++ G+V+KK +  AR LF  MP ++ +SW+ MI+GY + G L 
Sbjct: 207 FDSKMDWEI---VSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A  LF+  P++ V AWTAM+SG+++ G +D A ++F+EMP KN V+WNAMIAGYV++  
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQ 323

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E   +L   M      P+                                 ++T++   
Sbjct: 324 IEKARELFDQM------PS---------------------------------RNTSSWNT 344

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +++ Y +CG+++ A  LF E+ ++D ++W AMISGYAQ G+ E+AL LF KMK +G   +
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
                  L +C     ++LG Q    +V   G          ++ + G+ G + EA D+ 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 359 KKMPFK 364
           + +  K
Sbjct: 464 EDITEK 469



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 222/468 (47%), Gaps = 52/468 (11%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   WN  IS +++K     A  +F  M  +++V+++AMISGY+   + D A ++F+  P
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + +++W  M+SGY+K G +  A  LF++MP K++V+WNAM++G+ +N + E+  K+   
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M    +  N  S + +L        ++  ++    +F S +  +  +   L+  Y +   
Sbjct: 179 M----LVKNEISWNGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKR 230

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L+DA  LF  +  +D ++WN MI+GYAQ+G   +A RLF+++       D   + A++  
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSG 286

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
               G++D   + F+ M     ++     +  M+    ++ ++ +A +L  +MP +   +
Sbjct: 287 FVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
            + T+++       +D A+     LF+  P      +  + + YA   + ++   + + M
Sbjct: 342 -WNTMVTGYAQCGNIDQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 429 KENNVV-----------KMPGYSWIEVGTVVH------EFRSGDRVHPELVSIHEKLKEL 471
           K +  +                + +E+G  +H       F++G      L++++ K   +
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 472 EKRMKLAGYVPDLE----------FALHAVGEEVKEQLLLFHSEKLAI 509
           E+   +   + + +          +A H  G   KE L LF S K+ I
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFG---KEALALFESMKMTI 501


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/565 (46%), Positives = 380/565 (67%), Gaps = 4/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WN ++ G+ +++ +L DA+ LFD++P  D +S+NIM++    N   +  A   F+ LP
Sbjct: 216 VSWNCLMGGYVRKK-RLDDARSLFDRMPVRDKISWNIMITGYAQNGL-LSEARRLFEELP 273

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           I+D  +W  M+SGFVQ   + +A  +F  MPEKN VSW+AMI+GY++  Q++KA ELF  
Sbjct: 274 IRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++  +W  M++GY + G +D A+ LFDEMP ++ ++W AMI+GY ++  +E+ L L 
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+L+  L  C+ +++L+LGKQ+H  + K+       A   L++MY KC
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A  +F +I  KD+V+WN MI+GYA+HG G++AL LF+ MK   +KPD +T V +L
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVL 512

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H G VD G++YF+SM  +YGI A   HYTCM+DLLGRAG+L EA++L+K MPF P 
Sbjct: 513 SACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPD 572

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N +G YV L+N+YAA  +W +V  +R 
Sbjct: 573 AATWGALLGASRIHGDTELGEKAAEKVFEMEPDN-SGMYVLLSNLYAASGRWREVREMRS 631

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSW+E+    H F  GD  HPE   I+  L+EL+  +K  G+V   + 
Sbjct: 632 KMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKL 691

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I +
Sbjct: 692 VLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQ 751

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R+IIVRD+ RFHHF +G+CSCGDYW
Sbjct: 752 RQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 198/366 (54%), Gaps = 46/366 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M  K  V+WN++L+GFA Q G +++A+++FD++   + +S+N +LS  + N   +D    
Sbjct: 148 MPEKDVVSWNAMLSGFA-QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRL 206

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD      I    SWN ++ G+V+KK +  AR LF  MP ++ +SW+ MI+GY + G L 
Sbjct: 207 FDSKMDWEI---VSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A  LF+  P++ V AWTAM+SG+++ G +D A ++F+EMP KN V+WNAMIAGYV++  
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQ 323

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E   +L   M      P+                                 ++T++   
Sbjct: 324 IEKARELFDQM------PS---------------------------------RNTSSWNT 344

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +++ Y +CG+++ A  LF E+ ++D ++W AMISGYAQ G+ E+AL LF KMK +G   +
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
                  L +C     ++LG Q    +V   G          ++ + G+ G + EA D+ 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 359 KKMPFK 364
           + +  K
Sbjct: 464 EDITEK 469



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 222/468 (47%), Gaps = 52/468 (11%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   WN  IS +++K     A  +F  M  +++V+++AMISGY+   + D A ++F+  P
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + +++W  M+SGY+K G +  A  LF++MP K++V+WNAM++G+ +N + E+  K+   
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M    +  N  S + +L        ++  ++    +F S +  +  +   L+  Y +   
Sbjct: 179 M----LVKNEISWNGLLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKR 230

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L+DA  LF  +  +D ++WN MI+GYAQ+G   +A RLF+++       D   + A++  
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR----DVFAWTAMVSG 286

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
               G++D   + F+ M     ++     +  M+    ++ ++ +A +L  +MP +   +
Sbjct: 287 FVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
            + T+++       +D A+     LF+  P      +  + + YA   + ++   + + M
Sbjct: 342 -WNTMVTGYAQCGNIDQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 429 KENNVV-----------KMPGYSWIEVGTVVH------EFRSGDRVHPELVSIHEKLKEL 471
           K +  +                + +E+G  +H       F++G      L++++ K   +
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSI 456

Query: 472 EKRMKLAGYVPDLE----------FALHAVGEEVKEQLLLFHSEKLAI 509
           E+   +   + + +          +A H  G   KE L LF S K+ I
Sbjct: 457 EEAFDVFEDITEKDIVSWNTMIAGYARHGFG---KEALALFESMKMTI 501


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/572 (49%), Positives = 369/572 (64%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G   Q G++ +A  LFD +P+ DVV+   M+         +V A  
Sbjct: 217 MPEKNVVSWTVMLGGLL-QEGRIDEACRLFDMMPEKDVVTRTNMIGG-YCQVGRLVEARM 274

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW TMI+G+VQ + +  AR LF  MPEKN VSW+AM+ GY  CG+LD+A
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF   P+KSVVA  AMI  + + G+V  A ++FD+M  K+  TW+AMI  Y       
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           D L+L RMM   GIRPN  SL SVL  C+ L++L  G+++H  + +S    D    + L+
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMY KCG+L  A ++F     KDVV WN++I+GYAQHG G +ALR+F  M   G+ PD +
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDV 514

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFV +L AC++ G V  G++ F+SM   Y +  K +HY CMVDLLGRAGKL EA+DLI+K
Sbjct: 515 TFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEK 574

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +    I+G LL ACR H +LDLAE AA  L  L P N AG ++ L+NIYA+  +WDD
Sbjct: 575 MPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN-AGPFILLSNIYASQGRWDD 633

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
           VA +R +M++  V K PG SWI V   VH+F  GD   HPE   I+  L+ L   ++ AG
Sbjct: 634 VAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAG 693

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y PD  F LH V EE K Q L +HSEKLA+A+GL+K+P+G PIRV KNLRVCGDCH A K
Sbjct: 694 YYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIK 753

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ +  REII+RD  RFHHFKDG+CSC DYW
Sbjct: 754 LIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 184/317 (58%), Gaps = 12/317 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  ++WNS++AG+  Q  + ++AQ +FDK+ + + +S+N ++S   +N+  +  A +
Sbjct: 124 MRDKNIISWNSIVAGYF-QNKRPQEAQNMFDKMSERNTISWNGLVSG-YINNGMINEARE 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SW  M+ G+V++  +++A  LF  MPEKN VSW+ M+ G ++ G++D+A
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA 241

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF + P K VV  T MI GY + G++  A  LFDEMP +N+V+W  MI GYV+N   +
Sbjct: 242 CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVD 301

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
              KL  +M       N  S +++L G ++   L    +    +F +   K   A   +I
Sbjct: 302 IARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASE----LFNAMPIKSVVACNAMI 353

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             + + G++  A ++F +++ KD  TW+AMI  Y + G    AL LF  M+ EG++P+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 301 TFVALLLACNHAGLVDL 317
           + +++L  C  AGL +L
Sbjct: 414 SLISVLSVC--AGLANL 428



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 173/335 (51%), Gaps = 53/335 (15%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +  K+  SWN++++G+ Q K   +A+++F  M E+N++SW+ ++SGYI  G +++A 
Sbjct: 121 FDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAR 180

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E+F   P ++VV+WTAM+ GY+K G +  AE LF +MP KN+V+W  M+ G ++    ++
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDE 240

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
             +L  MM      P                                  KD    T +I 
Sbjct: 241 ACRLFDMM------PE---------------------------------KDVVTRTNMIG 261

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            YC+ G L +A  LF E+ R++VV+W  MI+GY Q+ + + A +LF+ M ++    + ++
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVS 317

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           + A+L    + G +D   + F++M     +A        M+   G+ G++ +A  +  +M
Sbjct: 318 WTAMLKGYTNCGRLDEASELFNAMPIKSVVAC-----NAMILCFGQNGEVPKARQVFDQM 372

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
             K +    GT  +  +V++R  L E  A+ LF +
Sbjct: 373 REKDE----GTWSAMIKVYERKGL-ELDALELFRM 402



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 121/270 (44%), Gaps = 40/270 (14%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           +++  ++I+ Y + G+++ A  +FDEM  KN+++WN+++AGY +N   ++   +   M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
                N  S + ++ G  +   +   ++    VF     ++  + T ++  Y K G + +
Sbjct: 156 --SERNTISWNGLVSGYINNGMINEARE----VFDRMPERNVVSWTAMVRGYVKEGMISE 209

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-------------------- 291
           A  LF ++  K+VV+W  M+ G  Q G+ ++A RLFD M                     
Sbjct: 210 AETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRL 269

Query: 292 -------DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
                  DE  + + +++  ++        VD+  + F+ M     ++     +T M+  
Sbjct: 270 VEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
               G+L EA +L   MP K   A    +L
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMIL 354


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/572 (49%), Positives = 369/572 (64%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G   Q G++ +A  LFD +P+ DVV+   M+         +V A  
Sbjct: 217 MPEKNVVSWTVMLGGLL-QEGRIDEACRLFDMMPEKDVVTRTNMIGG-YCQVGRLVEARM 274

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW TMI+G+VQ + +  AR LF  MPEKN VSW+AM+ GY  CG+LD+A
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF   P+KSVVA  AMI  + + G+V  A ++FD+M  K+  TW+AMI  Y       
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           D L+L RMM   GIRPN  SL SVL  C+ L++L  G+++H  + +S    D    + L+
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMY KCG+L  A ++F     KDVV WN++I+GYAQHG G +ALR+F  M   G+ PD +
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDV 514

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFV +L AC++ G V  G++ F+SM   Y +  K +HY CMVDLLGRAGKL EA+DLI+K
Sbjct: 515 TFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEK 574

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +    I+G LL ACR H +LDLAE AA  L  L P N AG ++ L+NIYA+  +WDD
Sbjct: 575 MPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN-AGPFILLSNIYASQGRWDD 633

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
           VA +R +M++  V K PG SWI V   VH+F  GD   HPE   I+  L+ L   ++ AG
Sbjct: 634 VAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAG 693

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y PD  F LH V EE K Q L +HSEKLA+A+GL+K+P+G PIRV KNLRVCGDCH A K
Sbjct: 694 YYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIK 753

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ +  REII+RD  RFHHFKDG+CSC DYW
Sbjct: 754 LIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 184/317 (58%), Gaps = 12/317 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  ++WNS++AG+  Q  + ++AQ +FDK+ + + +S+N ++S   +N+  +  A +
Sbjct: 124 MRDKNIISWNSIVAGYF-QNKRPQEAQNMFDKMSERNTISWNGLVSG-YINNGMINEARE 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SW  M+ G+V++  +++A  LF  MPEKN VSW+ M+ G ++ G++D+A
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA 241

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF + P K VV  T MI GY + G++  A  LFDEMP +N+V+W  MI GYV+N   +
Sbjct: 242 CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVD 301

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
              KL  +M       N  S +++L G ++   L    +    +F +   K   A   +I
Sbjct: 302 IARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASE----LFNAMPIKSVVACNAMI 353

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             + + G++  A ++F +++ KD  TW+AMI  Y + G    AL LF  M+ EG++P+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 301 TFVALLLACNHAGLVDL 317
           + +++L  C  AGL +L
Sbjct: 414 SLISVLSVC--AGLANL 428



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 173/335 (51%), Gaps = 53/335 (15%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +  K+  SWN++++G+ Q K   +A+++F  M E+N++SW+ ++SGYI  G +++A 
Sbjct: 121 FDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAR 180

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E+F   P ++VV+WTAM+ GY+K G +  AE LF +MP KN+V+W  M+ G ++    ++
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDE 240

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
             +L  MM      P                                  KD    T +I 
Sbjct: 241 ACRLFDMM------PE---------------------------------KDVVTRTNMIG 261

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            YC+ G L +A  LF E+ R++VV+W  MI+GY Q+ + + A +LF+ M ++    + ++
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVS 317

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           + A+L    + G +D   + F++M     +A        M+   G+ G++ +A  +  +M
Sbjct: 318 WTAMLKGYTNCGRLDEASELFNAMPIKSVVAC-----NAMILCFGQNGEVPKARQVFDQM 372

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
             K +    GT  +  +V++R  L E  A+ LF +
Sbjct: 373 REKDE----GTWSAMIKVYERKGL-ELDALELFRM 402



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 121/270 (44%), Gaps = 40/270 (14%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           +++  ++I+ Y + G+++ A  +FDEM  KN+++WN+++AGY +N   ++   +   M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
                N  S + ++ G  +   +   ++    VF     ++  + T ++  Y K G + +
Sbjct: 156 --SERNTISWNGLVSGYINNGMINEARE----VFDRMPERNVVSWTAMVRGYVKEGMISE 209

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-------------------- 291
           A  LF ++  K+VV+W  M+ G  Q G+ ++A RLFD M                     
Sbjct: 210 AETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRL 269

Query: 292 -------DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
                  DE  + + +++  ++        VD+  + F+ M     ++     +T M+  
Sbjct: 270 VEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
               G+L EA +L   MP K   A    +L
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVACNAMIL 354


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/565 (46%), Positives = 365/565 (64%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ G+ K R  L DA++LFD++P  DV+S+N M+S       D+  A   F   P
Sbjct: 202 ISWNCLMGGYVK-RNMLGDARQLFDRMPVRDVISWNTMISG-YAQVGDLSQAKRLFNESP 259

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           I+D  +W  M+SG+VQ   + +AR  F  MP KN +S++AM++GY++  ++  A ELF+ 
Sbjct: 260 IRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEA 319

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P +++ +W  MI+GY + G +  A KLFD MP ++ V+W A+I+GY +N   E+ L + 
Sbjct: 320 MPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMF 379

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+ S  L  C+ +++L+LGKQVH  V K+           L+ MY KC
Sbjct: 380 VEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKC 439

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G  ++A  +F  I+ KDVV+WN MI+GYA+HG G +AL LF+ MK  G+KPD IT V +L
Sbjct: 440 GSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVL 499

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H+GL+D G +YF SM  DY +     HYTCM+DLLGRAG+L EA +L++ MPF P 
Sbjct: 500 SACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPG 559

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N+ G YV L+N+YAA  +W DV ++R 
Sbjct: 560 AASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS-GMYVLLSNLYAASGRWVDVGKMRS 618

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M+E  V K+ GYSW+EV   +H F  GD  HPE   I+  L+EL+ +M+  GYV   + 
Sbjct: 619 KMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKL 678

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 679 VLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVG 738

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD+ RFHHF +G CSCGDYW
Sbjct: 739 RLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 193/357 (54%), Gaps = 41/357 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +++V++N++++G+ +   K   A++LFDK+P+ D+ S+N+ML+  + N   +  A  
Sbjct: 72  MPRRSSVSYNAMISGYLRN-AKFSLARDLFDKMPERDLFSWNVMLTGYVRNR-RLGEAHK 129

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN M+SG+ Q   + +AR++F  MP +NS+SW+ +++ Y+  G+L +A
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEA 189

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGYMKFGKVD 149
             LF+                                 PV+ V++W  MISGY + G + 
Sbjct: 190 RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A++LF+E P +++ TW AM++GYV+N   ++  K    M       N  S +++L G  
Sbjct: 250 QAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PVKNEISYNAMLAGYV 305

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
               + +  +    +F++  C++ ++   +I+ Y + G +  A KLF  + ++D V+W A
Sbjct: 306 QYKKMVIAGE----LFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAA 361

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +ISGYAQ+G  E+AL +F +MK +G   +  TF   L  C     ++LG Q    +V
Sbjct: 362 IISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVV 418



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 178/335 (53%), Gaps = 26/335 (7%)

Query: 32  KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
           K   PD+V++N  +S  + N     +A   F  +P + + S+N MISG+++    + ARD
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGH-CDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARD 98

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF  MPE++  SW+ M++GY+   +L +A +LF + P K VV+W AM+SGY + G VD A
Sbjct: 99  LFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEA 158

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            ++F++MP +N ++WN ++A YV N   ++  +L         + N   +S   L   ++
Sbjct: 159 REVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFES------QSNWELISWNCLMGGYV 212

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
               LG    QL  + P+ +D  +   +IS Y + GDL  A +LF E   +DV TW AM+
Sbjct: 213 KRNMLG-DARQLFDRMPV-RDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMV 270

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGY Q+G  ++A + FD+M  +    + I++ A+L     AG V    QY   ++     
Sbjct: 271 SGYVQNGMVDEARKYFDEMPVK----NEISYNAML-----AGYV----QYKKMVIAGELF 317

Query: 332 AAKP----DHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            A P      +  M+   G+ G + +A  L   MP
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMP 352


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/565 (45%), Positives = 363/565 (64%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ GF +++ KL DA+ LFDK+P  D +S+N M+S        +  A   F   P
Sbjct: 205 ISWNCLMGGFVRKK-KLGDARWLFDKMPVRDAISWNTMISG-YAQGGGLSQARRLFDESP 262

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  +W  M+SG+VQ   + +A+  F  MPEKN VS++AMI+GY++  ++D A ELF+ 
Sbjct: 263 TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFES 322

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P +++ +W  MI+GY + G +  A K FD MP ++ V+W A+IAGY ++   E+ L + 
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             +   G   N ++    L  C+ +++L+LGKQ+H    K            L++MY KC
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +++A   F  I+ KDVV+WN M++GYA+HG G +AL +F+ MK  G+KPD IT V +L
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GL+D G +YF SM  DYG+     HYTCM+DLLGRAG+L EA DLI+ MPF+P 
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPG 562

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N+ G YV L+N+YAA  +W D  ++R 
Sbjct: 563 AASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS-GMYVLLSNLYAASGRWVDADKMRS 621

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSW+EV   +H F  GD  HPE   I+  L+EL+ +M+  GYV   + 
Sbjct: 622 KMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKL 681

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 682 VLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVG 741

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD+ RFHHF +G CSCGDYW
Sbjct: 742 RLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 221/432 (51%), Gaps = 47/432 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +++V++N++++G+ +   K   A+ LFD++P+ D+ S+N+ML+  + N   +  A  
Sbjct: 75  MPRRSSVSYNAMISGYLRN-SKFNLARNLFDQMPERDLFSWNVMLTGYVRNC-RLGDARR 132

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN+++SG+ Q   + +AR++F  MPEKNS+SW+ +++ Y+  G++++A
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA 192

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGYMKFGKVD 149
             LF+                                 PV+  ++W  MISGY + G + 
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A +LFDE PT+++ TW AM++GYV+N   ++       M       N  S ++++ G  
Sbjct: 253 QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYV 308

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
               + + ++    +F+S  C++ ++   +I+ Y + GD+  A K F  + ++D V+W A
Sbjct: 309 QTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-D 328
           +I+GYAQ G  E+AL +F ++K +G   +  TF   L  C     ++LG Q     V   
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLA 386
           YG      +   ++ +  + G + EA D  + +  K   + + T+L+    H   R  L 
Sbjct: 425 YGTGCFVGN--ALLAMYFKCGSIDEANDTFEGIEEKDVVS-WNTMLAGYARHGFGRQALT 481

Query: 387 EFAAMNLFNLNP 398
            F +M    + P
Sbjct: 482 VFESMKTAGVKP 493



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 168/331 (50%), Gaps = 18/331 (5%)

Query: 32  KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
           ++  PD++ +N  +S  + N     +A   F  +P + + S+N MISG+++      AR+
Sbjct: 43  RVKDPDILKWNKAISTHMRNGH-CDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARN 101

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF  MPE++  SW+ M++GY+   +L  A  LF + P K VV+W +++SGY + G VD A
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            ++FD MP KN ++WN ++A YV N   E+   L         + +   +S   L    +
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES------KSDWDLISWNCLMGGFV 215

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
              +LG    + +F     +D  +   +IS Y + G L  A +LF E   +DV TW AM+
Sbjct: 216 RKKKLGDA--RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGY Q+G  ++A   FD+M ++    + +++ A++        +D+  + F+SM      
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIARELFESMP----- 324

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
                 +  M+   G+ G + +A      MP
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMP 355



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 125/268 (46%), Gaps = 58/268 (21%)

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            LL   + GL+D G +YF  M  +Y +     HYTCM+DLLGR  +L E           
Sbjct: 770 FLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------- 818

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
                 G LL A R+H   +L E AA   F + P N            + + K  DV   
Sbjct: 819 ------GALLGASRIHGNTELGEKAAQMFFKMGPQN------------SGISKMRDVG-- 858

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
                   V K+PGYSW EV   +H F  G  +  E  +I              G++ +L
Sbjct: 859 --------VQKVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLEEL 896

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF-KNLRVCGDCHRATKYISA 543
           +  +    EE KE+ L + SE LA A G++ +P+G P RV  K + VC DC  A K++S 
Sbjct: 897 DLKMRER-EEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSK 955

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  R I +RD+   H F +  CSCG+YW
Sbjct: 956 IVGRLITLRDS---HRFNESICSCGEYW 980


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/565 (45%), Positives = 363/565 (64%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ GF +++ KL DA+ LFDK+P  D +S+N M+S        +  A   F   P
Sbjct: 205 ISWNCLMGGFVRKK-KLGDARWLFDKMPVRDAISWNTMISG-YAQGGGLSQARRLFDESP 262

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  +W  M+SG+VQ   + +A+  F  MPEKN VS++AMI+GY++  ++D A ELF+ 
Sbjct: 263 TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFES 322

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P +++ +W  MI+GY + G +  A K FD MP ++ V+W A+IAGY ++   E+ L + 
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             +   G   N ++    L  C+ +++L+LGKQ+H    K            L++MY KC
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +++A   F  I+ KDVV+WN M++GYA+HG G +AL +F+ MK  G+KPD IT V +L
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GL+D G +YF SM  DYG+     HYTCM+DLLGRAG+L EA DLI+ MPF+P 
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPG 562

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H   +L E AA  +F + P N+ G YV L+N+YAA  +W D  ++R 
Sbjct: 563 AASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS-GMYVLLSNLYAASGRWVDADKMRS 621

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K+PGYSW+EV   +H F  GD  HPE   I+  L+EL+ +M+  GYV   + 
Sbjct: 622 KMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKL 681

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 682 VLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVG 741

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R II+RD+ RFHHF +G CSCGDYW
Sbjct: 742 RLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 221/432 (51%), Gaps = 47/432 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +++V++N++++G+ +   K   A+ LFD++P+ D+ S+N+ML+  + N   +  A  
Sbjct: 75  MPRRSSVSYNAMISGYLRN-SKFNLARNLFDQMPERDLFSWNVMLTGYVRNC-RLGDARR 132

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN+++SG+ Q   + +AR++F  MPEKNS+SW+ +++ Y+  G++++A
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA 192

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGYMKFGKVD 149
             LF+                                 PV+  ++W  MISGY + G + 
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A +LFDE PT+++ TW AM++GYV+N   ++       M       N  S ++++ G  
Sbjct: 253 QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYV 308

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
               + + ++    +F+S  C++ ++   +I+ Y + GD+  A K F  + ++D V+W A
Sbjct: 309 QTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-D 328
           +I+GYAQ G  E+AL +F ++K +G   +  TF   L  C     ++LG Q     V   
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLA 386
           YG      +   ++ +  + G + EA D  + +  K   + + T+L+    H   R  L 
Sbjct: 425 YGTGCFVGN--ALLAMYFKCGSIDEANDTFEGIEEKDVVS-WNTMLAGYARHGFGRQALT 481

Query: 387 EFAAMNLFNLNP 398
            F +M    + P
Sbjct: 482 VFESMKTAGVKP 493



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 168/331 (50%), Gaps = 18/331 (5%)

Query: 32  KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
           ++  PD++ +N  +S  + N     +A   F  +P + + S+N MISG+++      AR+
Sbjct: 43  RVKDPDILKWNKAISTHMRNGH-CDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARN 101

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF  MPE++  SW+ M++GY+   +L  A  LF + P K VV+W +++SGY + G VD A
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            ++FD MP KN ++WN ++A YV N   E+   L         + +   +S   L    +
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES------KSDWDLISWNCLMGGFV 215

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
              +LG    + +F     +D  +   +IS Y + G L  A +LF E   +DV TW AM+
Sbjct: 216 RKKKLGDA--RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGY Q+G  ++A   FD+M ++    + +++ A++        +D+  + F+SM      
Sbjct: 274 SGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIARELFESMP----- 324

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
                 +  M+   G+ G + +A      MP
Sbjct: 325 CRNISSWNTMITGYGQIGDIAQARKFFDMMP 355


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/565 (45%), Positives = 363/565 (64%), Gaps = 3/565 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++ N ++ G+ K R  L DA++LFD+IP  D++S+N M+S    + D +  A   F+  P
Sbjct: 189 ISCNCLMGGYVK-RNMLGDARQLFDQIPVRDLISWNTMISGYAQDGD-LSQARRLFEESP 246

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+  +VQ   + +AR +F  MP+K  +S++ MI+GY +  ++D   ELF+ 
Sbjct: 247 VRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEE 306

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P  ++ +W  MISGY + G +  A  LFD MP ++ V+W A+IAGY +N   E+ + +L
Sbjct: 307 MPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+    L  C+ +++L+LGKQVH  V ++   K       L+ MYCKC
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC 426

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +++A  +F  +Q KD+V+WN M++GYA+HG G +AL +F+ M   G+KPD IT V +L
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GL D G +YF SM  DYGI     HY CM+DLLGRAG L EA +LI+ MPF+P 
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            A +G LL A R+H  ++L E AA  +F + P N +G YV L+N+YAA  +W DV+++RL
Sbjct: 547 AATWGALLGASRIHGNMELGEQAAEMVFKMEPHN-SGMYVLLSNLYAASGRWVDVSKMRL 605

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M++  V K PGYSW+EV   +H F  GD  HPE   I+  L+EL+ +MK  GYV   + 
Sbjct: 606 KMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKL 665

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE K+ +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 666 VLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVG 725

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R IIVRD+ R+HHF +G CSC DYW
Sbjct: 726 RLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 219/431 (50%), Gaps = 45/431 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M ++ +V++N++++G+ +   K   A++LFDK+P  D+ S+N+ML+    N   +  A  
Sbjct: 59  MPLRNSVSYNAMISGYLRN-AKFSLARDLFDKMPHKDLFSWNLMLTGYARNR-RLRDARM 116

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN M+SG+V+  ++ +ARD+F  MP KNS+SW+ +++ Y+  G+L++A
Sbjct: 117 LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA 176

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGYMKFGKVD 149
             LF+                                 PV+ +++W  MISGY + G + 
Sbjct: 177 RRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLS 236

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A +LF+E P +++ TW AM+  YV++   ++  ++   M     +    S + ++ G +
Sbjct: 237 QARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM----PQKREMSYNVMIAGYA 292

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
               + +G++    +F+     +  +   +IS YC+ GDL  A  LF  + ++D V+W A
Sbjct: 293 QYKRMDMGRE----LFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAA 348

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           +I+GYAQ+G  E+A+ +  +MK +G   +  TF   L AC     ++LG Q    +V   
Sbjct: 349 IIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT- 407

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAE 387
           G          +V +  + G + EA D+ + +  K   + + T+L+    H   R  L  
Sbjct: 408 GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVS-WNTMLAGYARHGFGRQALTV 466

Query: 388 FAAMNLFNLNP 398
           F +M    + P
Sbjct: 467 FESMITAGVKP 477



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 179/371 (48%), Gaps = 55/371 (14%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +P++++ S+N MISG+++    + ARDLF  MP K+  SW+ M++GY    +L  A 
Sbjct: 56  FDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDAR 115

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            LF   P K VV+W AM+SGY++ G VD A  +FD MP KN ++WN ++A YV +   E+
Sbjct: 116 MLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEE 175

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
             +L                                       F+S    +  +   L+ 
Sbjct: 176 ARRL---------------------------------------FESKSDWELISCNCLMG 196

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y K   L DA +LF +I  +D+++WN MISGYAQ G   +A RLF    +E    D  T
Sbjct: 197 GYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF----EESPVRDVFT 252

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           + A++ A    G++D   + FD M     ++     Y  M+    +  ++    +L ++M
Sbjct: 253 WTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEM 307

Query: 362 PFKPQPAIFGTLLSA-CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           PF P    +  ++S  C   +  DLA+  A NLF++ P   +  +  +   YA    +++
Sbjct: 308 PF-PNIGSWNIMISGYC---QNGDLAQ--ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEE 361

Query: 421 VARIRLSMKEN 431
              + + MK +
Sbjct: 362 AMNMLVEMKRD 372


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/603 (45%), Positives = 377/603 (62%), Gaps = 35/603 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W +++ G+  Q G + +A+ LF ++P+ +VVS+ +ML   L+    +  A  
Sbjct: 104 MPERNVVSWTAMVRGYV-QEGLVSEAETLFWQMPEKNVVSWTVMLGG-LIQVRRIDEARG 161

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P+KD  +   MISG+ Q+  +A+AR+LF  MP +N +SW+ MISGY++ GQ+D A
Sbjct: 162 LFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVA 221

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN---- 176
            +LF+V P K+ V+WTAM+ GY + G+++ A +LFD MP K +V  NAMI G+ +N    
Sbjct: 222 RKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVA 281

Query: 177 ---------------SWAE------------DGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
                          +W+             + L L  +M   G++ N  SL SVL  C+
Sbjct: 282 KARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCA 341

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L+SL  G+QVH  + KS    D    + LI+MY KCGDL  A ++F     KD+V WN+
Sbjct: 342 SLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNS 401

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           +I+GYAQHG  E+AL++F +M   GM  D +TFV +L AC++ G V  G++ F+SM + Y
Sbjct: 402 IITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKY 461

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
            +  K +HY CMVDLLGRAG + +A+DLI+KMP +    I+G LL ACR H  ++LAE A
Sbjct: 462 LVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVA 521

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A  L  L P N AG Y+ L+NIYA+  +W DVA +R +M+   V K PG SWIEV   VH
Sbjct: 522 AKKLLQLEPKN-AGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVH 580

Query: 450 EFRSG-DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
            F  G    HPEL SI + L++L+  ++ AGY PD  F LH V EE K + L  HSE+LA
Sbjct: 581 MFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLA 640

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGL+KVP G PIRV KNLRVCGDCH A K I+ I  REII+RD  RFHHFKDG CSC 
Sbjct: 641 VAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCR 700

Query: 569 DYW 571
           DYW
Sbjct: 701 DYW 703



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 207/372 (55%), Gaps = 23/372 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+WNS++AG+  Q  + ++A+ LFDK+P+ + VS+N ++S  + N   V  A   F 
Sbjct: 45  KGIVSWNSMVAGYF-QNNRPREARYLFDKMPERNTVSWNGLISGYVKNRM-VSEARKAFD 102

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P ++  SW  M+ G+VQ+  +++A  LF  MPEKN VSW+ M+ G I+  ++D+A  L
Sbjct: 103 TMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGL 162

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F + PVK VVA T MISGY + G++  A +LFDEMP +N+++W  MI+GYV+N   +   
Sbjct: 163 FDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVAR 222

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           KL  +M       N  S +++L+G +    ++   +    +F +   K   A   +I  +
Sbjct: 223 KLFEVM----PEKNEVSWTAMLMGYTQGGRIEEASE----LFDAMPVKAVVACNAMILGF 274

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            + G++  A ++F +I+ KD  TW+AMI  Y + G   +AL LF  M+ EG++ +  + +
Sbjct: 275 GQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLI 334

Query: 304 ALLLACNHAGLVDLGIQYFDSMV-----NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           ++L  C     +D G Q    +V     +D  +A      + ++ +  + G LV+A  + 
Sbjct: 335 SVLSVCASLASLDHGRQVHAELVKSQFDSDVFVA------SVLITMYVKCGDLVKARQIF 388

Query: 359 KKMPFKPQPAIF 370
            +  F P+  + 
Sbjct: 389 DR--FSPKDIVM 398



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 176/342 (51%), Gaps = 53/342 (15%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           + +A   F  +P K   SWN+M++G+ Q     +AR LF  MPE+N+VSW+ +ISGY++ 
Sbjct: 32  IESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKN 91

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
             + +A + F   P ++VV+WTAM+ GY++ G V  AE LF +MP KN+V+W  M+ G +
Sbjct: 92  RMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLI 151

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +    ++   L  +M                                      P+ KD  
Sbjct: 152 QVRRIDEARGLFDIM--------------------------------------PV-KDVV 172

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
           A T +IS YC+ G L +A +LF E+ R++V++W  MISGY Q+G+ + A +LF+ M ++ 
Sbjct: 173 ARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK- 231

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              + +++ A+L+     G ++   + FD+M     +A        M+   G+ G++ +A
Sbjct: 232 ---NEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVAC-----NAMILGFGQNGEVAKA 283

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
             +  ++  K      GT  +  +V++R    E  A+NLF L
Sbjct: 284 RQVFDQIREKDD----GTWSAMIKVYERKGF-EVEALNLFAL 320


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/572 (46%), Positives = 359/572 (62%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G  +  G++ +A+ LFD IP  DVV+   M+   L +   +  A +
Sbjct: 135 MPEKNVVSWTVMLGGLIED-GRVDEARRLFDMIPVKDVVASTNMIGG-LCSEGRLSEARE 192

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  +W +MISG+     +  AR LF  MP+KN V+W+AM+ GY   G++++A
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEA 252

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELFK  PVK V A   MI G+   G+V  A  +FD+M  K+  TW+A+I  Y    +  
Sbjct: 253 AELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFEL 312

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L L  +M   G+RPN  S+ S+L  C  L+SL  G+QVH  + +S    D    + LI
Sbjct: 313 EALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLI 372

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCGDL    ++F     KD+V WN++I+GYAQHG GEKAL +F +M   G  PD I
Sbjct: 373 TMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEI 432

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +L AC + G V  G++ F+SM + Y +  K +HY CMVDLLGRAGKL EA++LI+ 
Sbjct: 433 TFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIEN 492

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +    ++G LLSACR HK LDLAE AA  L  L P+ +AG Y+ L+N+YA+  +W D
Sbjct: 493 MPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPS-SAGPYILLSNLYASQSRWKD 551

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
           VA +R +M+  NV K PG SWIEV   VH F  G    HPE   I +KL++L   ++ AG
Sbjct: 552 VAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAG 611

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y PD  F +H V EE K   L  HSEK+A+A+GL+KVP+G PIRV KNLRVCGDCH A K
Sbjct: 612 YCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIK 671

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ +  REII+RD  RFHHFKDG CSC D+W
Sbjct: 672 LIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 185/329 (56%), Gaps = 10/329 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +  KT  +WN+++AG+   + +  +AQ+LFDK+P+ + +S+N ++S  + N   +  A  
Sbjct: 42  LQSKTVTSWNAIVAGYFHNK-RPAEAQKLFDKMPERNTISWNGLVSGYVKNGM-ISEARK 99

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++P ++  SW +M+ G+VQ+  + +A  LF  MPEKN VSW+ M+ G IE G++D+A
Sbjct: 100 VFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEA 159

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF + PVK VVA T MI G    G++  A ++FDEMP +N+V W +MI+GY  N+  +
Sbjct: 160 RRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVD 219

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
              KL  +M       N  + +++L G +    +    +    +FK+   K   A   +I
Sbjct: 220 VARKLFEVMPD----KNEVTWTAMLKGYTRSGRINEAAE----LFKAMPVKPVAACNGMI 271

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             +   G++  A  +F +++ KD  TW+A+I  Y + G   +AL LF  M+ EG++P+  
Sbjct: 272 MGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFP 331

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           + +++L  C     +D G Q    +V  +
Sbjct: 332 SIISILSVCGSLASLDHGRQVHSQLVRSH 360



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 79/317 (24%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A + F  L  K   SWN +++G+   K  A+A+ LF  MPE+N++SW+ ++SGY++ G +
Sbjct: 35  ARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMI 94

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
            +A ++F   P ++VV+WT+M+ GY++ G +D AE LF  MP KN+V+W  M+ G +E+ 
Sbjct: 95  SEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDG 154

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             ++  +L  M+                                      P+ KD  A T
Sbjct: 155 RVDEARRLFDMI--------------------------------------PV-KDVVAST 175

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            +I   C  G L +A ++F E+ +++VV W +MISGYA + K + A +LF+ M D+    
Sbjct: 176 NMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK---- 231

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           + +T+ A+L                               YT       R+G++ EA +L
Sbjct: 232 NEVTWTAMLKG-----------------------------YT-------RSGRINEAAEL 255

Query: 358 IKKMPFKPQPAIFGTLL 374
            K MP KP  A  G ++
Sbjct: 256 FKAMPVKPVAACNGMIM 272


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/533 (46%), Positives = 362/533 (67%), Gaps = 3/533 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   P
Sbjct: 194 ISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAAP 251

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF +
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V +W  M++GY + G ++ A+ +FD MP K+ V+W AM+A Y +   +E+ L+L 
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY KC
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +L
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 491

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P 
Sbjct: 492 AACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPD 551

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL A R+H+  +L   AA  +F L P N AG YV L+NIYA+  KW D  ++R+
Sbjct: 552 STMWGALLGASRIHRNPELGRSAAEKIFELEPEN-AGMYVLLSNIYASSGKWRDARKMRV 610

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   + 
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
            LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A K
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 186/325 (57%), Gaps = 14/325 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++T  +N++LAG++   G+L  A  LF  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 64  MPRRSTSTYNAMLAGYSAN-GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS-LADARG 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D+ ++N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++++A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF       V++W A++SGY+++GK+  A +LFD MP +++V+WN M++GY       
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG--- 238

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           D ++  R+     +R +  + ++V+ G +    L+  ++    VF +   ++  +   ++
Sbjct: 239 DMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARR----VFDAMPERNAVSWNAMV 293

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           + Y +   +++A +LF  +  ++V +WN M++GYAQ G  E+A  +FD M  +    D++
Sbjct: 294 AAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAV 349

Query: 301 TFVALLLACNHAGLVDLGIQYFDSM 325
           ++ A+L A +  G  +  +Q F  M
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEM 374



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 175/374 (46%), Gaps = 70/374 (18%)

Query: 21  GKLKDAQE-------------------------------LFDKIPQPDVVSYNIMLSCIL 49
           G++ DA+                                LF  IP+PD  SYN +L  + 
Sbjct: 52  GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALA 111

Query: 50  LNSD--DVVAAFD----------------------------FFQRLPIKDTASWNTMISG 79
           ++S   D    FD                            +F   P KD  SWN M++ 
Sbjct: 112 VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAA 171

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           +V+   + +AR LF +  E + +SW+A++SGY++ G++ +A ELF   P + VV+W  M+
Sbjct: 172 YVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMV 231

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           SGY + G +  A +LFD  P +++ TW A+++GY +N   E+  ++   M      P  +
Sbjct: 232 SGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERN 285

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           ++S   +  +++    + +   + +F    C++  +   +++ Y + G LE+A  +F  +
Sbjct: 286 AVSWNAMVAAYIQRRMMDEA--KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            +KD V+W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+
Sbjct: 344 PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGM 403

Query: 320 QYFDSMVN-DYGIA 332
           Q    ++   YG+ 
Sbjct: 404 QLHGRLIRAGYGVG 417



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 24/333 (7%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +P+V+  N  ++   + +  V  A   F  +P + T+++N M++G+     +  A  LF 
Sbjct: 35  EPEVIRSNKAITA-HMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
           A+P  ++ S++ ++        L  A  LF   PV+  V +  MIS +   G V LA   
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS- 213
           FD  P K+ V+WN M+A YV N   E+   L           N+ +   V+   + +S  
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----------NSRTEWDVISWNALMSGY 203

Query: 214 LQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           +Q GK  +  +L  + P  +D  +   ++S Y + GD+ +A +LF     +DV TW A++
Sbjct: 204 VQWGKMSEARELFDRMP-GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGYAQ+G  E+A R+FD M +     +++++ A++ A     ++D   + F+ M+    +
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MMPCRNV 317

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           A+    +  M+    +AG L EA  +   MP K
Sbjct: 318 AS----WNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/560 (44%), Positives = 365/560 (65%), Gaps = 8/560 (1%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA 71
           +++G+ +   K   A++LFDK+P+ D+ S+N+ML+  + N D +  A   F+R+P +D  
Sbjct: 1   MISGYLRNH-KFDLARDLFDKMPERDLFSWNVMLTGYVRNRD-LKTARALFERMPERDIV 58

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           SWN M+SG+ Q   + +AR++F  MP KN +SW+ +++ Y++ G+++ A  LF+     +
Sbjct: 59  SWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWT 118

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           +V+W  ++ G+++  +      LFD MP ++ ++W+AMIAGY +N  +E+ L     M  
Sbjct: 119 LVSWNCLMGGFVRKRR-----NLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQR 173

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
              R N SS +  L  CS++++L+LG+Q+H  + K+           L++MYCKCG +++
Sbjct: 174 DCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDE 233

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A   F EI  KDVV+WN MI GYA+HG GE+AL +F+ MK  G++PD  T V++L AC+H
Sbjct: 234 ARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSH 293

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AGLVD G +YF SM  DYGI AK  HYTCMVDLLGRAG+L EA +L+K MPF+P  A +G
Sbjct: 294 AGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWG 353

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL A R+H   +L E AA  +F + P N +G Y+ L+ +YAA  +W D  ++RL M+  
Sbjct: 354 ALLGASRIHGNTELGEKAAQIIFEMEPHN-SGMYILLSKLYAASGRWSDAGKMRLEMRNK 412

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            V K+PGYSW+EV   +H F+ GD  HP    I+  L+E++ ++K  GY+       H V
Sbjct: 413 GVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDV 472

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE K  +L +HSEKLA+A+G++ +P G PIRV KNLRVC DCH A KYIS I  R II+
Sbjct: 473 EEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIIL 532

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFH+F+ G+CSC D+W
Sbjct: 533 RDNHRFHYFEGGSCSCRDFW 552



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 161/335 (48%), Gaps = 51/335 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L+G+A Q G + +A+E+F K+P  + +S+N +L+  + N   +  A  
Sbjct: 52  MPERDIVSWNAMLSGYA-QNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNG-RIEDAKR 109

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+        SWN ++ GFV+K+     R+LF  MP+++S+SWSAMI+GY + G  ++A
Sbjct: 110 LFESKMDWTLVSWNCLMGGFVRKR-----RNLFDNMPQRDSISWSAMIAGYSQNGCSEEA 164

Query: 121 VELF------------------------------------KVAPVKSVVAW---TAMISG 141
           +  F                                    ++        W    A+++ 
Sbjct: 165 LHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAM 224

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G +D A   F E+  K++V+WN MI GY  + + E+ L +  +M   GIRP+ +++
Sbjct: 225 YCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATM 284

Query: 202 SSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            SVL  CSH   +  G +  + +     +       T ++ +  + G LE+A  L   + 
Sbjct: 285 VSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMP 344

Query: 261 -RKDVVTWNAMISGYAQHGK---GEKALRLFDKMK 291
              D  TW A++     HG    GEKA ++  +M+
Sbjct: 345 FEPDAATWGALLGASRIHGNTELGEKAAQIIFEME 379


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/572 (44%), Positives = 360/572 (62%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V++  +L G     G++ +A+ LFD++P  DVV++  MLS     +  +  A  
Sbjct: 138 MPERNHVSYTVLLGGLLDA-GRVNEARRLFDEMPDRDVVAWTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF   P   V A  AM+ G+ + G VD A+ +F++M  ++  TW+AMI  Y +N +  
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L   R M+  G+RPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ LI
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+L+ A ++F   + KD+V WN+MI+GYAQHG GE+AL +F  M+  GM PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T++  L AC++ G V  G + F+SM  +  I    +HY+CMVDLLGR+G + EA DLIK 
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P   I+G L+ ACR+H+  ++AEFAA  L  L P N AG YV L++IY ++ +W+D
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN-AGPYVLLSHIYTSVGRWED 554

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
            +++R  +   N+ K PG SWIE    VH F SGD + HPE  +I   L++L+  +  +G
Sbjct: 555 ASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESG 614

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y  D  F LH + EE K   L +HSE+ A+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 155/342 (45%), Gaps = 72/342 (21%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  + ++  A   F+ +P++ TAS+N +++G+ + +    A  LF  MP ++  S++A+I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 109 S---------------------------------GYIECGQLDKAVELFKVAPVKS---- 131
           S                                 GY+  G L  A+ LF+  P ++    
Sbjct: 87  SGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSY 146

Query: 132 ---------------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                                      VVAWTAM+SGY + G++  A  LFDEMP +N+V
Sbjct: 147 TVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W AMI+GY +N       KL  +M       N  S +++L+G      ++   ++   +
Sbjct: 207 SWTAMISGYAQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            + P+     A   ++  + + G ++ A  +F ++  +D  TW+AMI  Y Q+    +AL
Sbjct: 263 PEHPV----AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
             F +M   G++P+  + +++L  C    ++D G +   +M+
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 140/257 (54%), Gaps = 20/257 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I+   +  N+  AR  F AMP + + S++A+++GY      D A+ LF+  P + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 134 AWTAMISGY-MKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           ++ A+ISG  ++   +  A      +P   ++V++ +++ GYV +    D ++L + M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 192 LGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               P  + +S +VLLG      L  G+  +  +L  + P  +D  A T ++S YC+ G 
Sbjct: 139 ----PERNHVSYTVLLG----GLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGR 189

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + +A  LF E+ +++VV+W AMISGYAQ+G+   A +LF+ M +     + +++ A+L+ 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVG 245

Query: 309 CNHAGLVDLGIQYFDSM 325
              AG V+   + F++M
Sbjct: 246 YIQAGHVEDAAELFNAM 262



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 135/273 (49%), Gaps = 33/273 (12%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A I+     G ++ A   F+  P+++  ++ A+++GY +    D A  LF  MP+++L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS-LSSVLLGCSHLS--SLQLGKQVH 221
           ++NA+I+G          L L R  +     P+A++ L+S+    S +S  SL  G   H
Sbjct: 81  SYNALISG----------LSLRRQTL-----PDAAAALASIPFPPSVVSFTSLLRGYVRH 125

Query: 222 QLV------FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            L+      F+    ++  + T L+      G + +A +LF E+  +DVV W AM+SGY 
Sbjct: 126 GLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYC 185

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           Q G+  +A  LFD+M     K + +++ A++      G V+L  + F+ M     ++   
Sbjct: 186 QAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS--- 238

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
             +T M+    +AG + +A +L   MP  P  A
Sbjct: 239 --WTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/572 (44%), Positives = 360/572 (62%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V++  +L G     G++ +A+ LFD++P  DVV++  MLS     +  +  A  
Sbjct: 138 MPERNHVSYTVLLGGLLDA-GRVNEARRLFDEMPDRDVVAWTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF   P   V A  AM+ G+ + G VD A+ +F++M  ++  TW+AMI  Y +N +  
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L   R M+  G+RPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ LI
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+L+ A ++F   + KD+V WN+MI+GYAQHG GE+AL +F  M+  GM PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T++  L AC++ G V  G + F+SM  +  I    +HY+CMVDLLGR+G + EA DLIK 
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P   I+G L+ ACR+H+  ++AEFAA  L  L P N AG YV L++IY ++ +W+D
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN-AGPYVLLSHIYTSVGRWED 554

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
            +++R  +   N+ K PG SWIE    VH F SGD + HPE  +I   L++L+  +  +G
Sbjct: 555 ASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESG 614

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y  D  F LH + EE K   L +HSE+ A+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 155/342 (45%), Gaps = 72/342 (21%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  + ++  A   F+ +P++ TAS+N +++G+ + +    A  LF  MP ++  S++A+I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 109 S---------------------------------GYIECGQLDKAVELFKVAPVKS---- 131
           S                                 GY+  G L  A+ LF+  P ++    
Sbjct: 87  SGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSY 146

Query: 132 ---------------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                                      VVAWTAM+SGY + G++  A  LFDEMP +N+V
Sbjct: 147 TVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W AMI+GY +N       KL  +M       N  S +++L+G      ++   ++   +
Sbjct: 207 SWTAMISGYAQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            + P+     A   ++  + + G ++ A  +F ++  +D  TW+AMI  Y Q+    +AL
Sbjct: 263 PEHPV----AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
             F +M   G++P+  + +++L  C    ++D G +   +M+
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 156/293 (53%), Gaps = 25/293 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I+   +  N+  AR  F AMP + + S++A+++GY      D A+ LF+  P + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 134 AWTAMISGY-MKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           ++ A+ISG  ++   +  A      +P   ++V++ +++ GYV +    D ++L + M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 192 LGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               P  + +S +VLLG      L  G+  +  +L  + P  +D  A T ++S YC+ G 
Sbjct: 139 ----PERNHVSYTVLLG----GLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGR 189

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + +A  LF E+ +++VV+W AMISGYAQ+G+   A +LF+ M +     + +++ A+L+ 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVG 245

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              AG V+   + F++M  ++ +AA       M+   G+ G +  A  + +KM
Sbjct: 246 YIQAGHVEDAAELFNAM-PEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKM 293



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 135/273 (49%), Gaps = 33/273 (12%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A I+     G ++ A   F+  P+++  ++ A+++GY +    D A  LF  MP+++L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS-LSSVLLGCSHLS--SLQLGKQVH 221
           ++NA+I+G          L L R  +     P+A++ L+S+    S +S  SL  G   H
Sbjct: 81  SYNALISG----------LSLRRQTL-----PDAAAALASIPFPPSVVSFTSLLRGYVRH 125

Query: 222 QLV------FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            L+      F+    ++  + T L+      G + +A +LF E+  +DVV W AM+SGY 
Sbjct: 126 GLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYC 185

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           Q G+  +A  LFD+M     K + +++ A++      G V+L  + F+ M     ++   
Sbjct: 186 QAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS--- 238

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
             +T M+    +AG + +A +L   MP  P  A
Sbjct: 239 --WTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/572 (43%), Positives = 359/572 (62%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V++  +L G     G++ +A+ LFD++P  DVV++  MLS     +  +  A  
Sbjct: 138 MPERNHVSYTVLLGGLLDA-GRVNEARRLFDEMPDRDVVAWTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF   P   V A  AM+ G+ + G VD A+ +F++M  ++  TW+AMI  Y +N +  
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLM 315

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L   R M+  G+RPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ LI
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+L+ A ++F   + KD+V WN+MI+GYAQHG GE+AL +F  M+  GM PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T++  L AC++ G V  G + F+SM  +  I    +HY+CMVDLLGR+G + EA DLIK 
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P   I+G L+ ACR+H+  ++AE AA  L  L P N AG YV L++IY ++ +W+D
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGN-AGPYVLLSHIYTSVGRWED 554

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
            +++R  +   N+ K PG SWIE    VH F SGD + HPE  +I   L++L+  +  +G
Sbjct: 555 ASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESG 614

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y  D  F LH + EE K   L +HSE+ A+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ I  REI++RD  RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 72/342 (21%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  + ++  A   F+ +P++ TAS+N +++G+ + +    A  LF  MP ++  S++A+I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 109 S---------------------------------GYIECGQLDKAVELFKVAPVKS---- 131
           S                                 GY+  G L  A+ LF+  P ++    
Sbjct: 87  SGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSY 146

Query: 132 ---------------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                                      VVAWTAM+SGY + G++  A  LFDEMP +N+V
Sbjct: 147 TVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W AMI+GY +N       KL  +M       N  S +++L+G      ++   ++   +
Sbjct: 207 SWTAMISGYAQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            + P+     A   ++  + + G ++ A  +F +++ +D  TW+AMI  Y Q+    +AL
Sbjct: 263 PEHPV----AACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEAL 318

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
             F +M   G++P+  + +++L  C    ++D G +   +M+
Sbjct: 319 STFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 156/293 (53%), Gaps = 25/293 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I+   +  N+  AR  F AMP + + S++A+++GY      D A+ LF+  P + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 134 AWTAMISGY-MKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           ++ A+ISG  ++   +  A      +P   ++V++ +++ GYV +    D ++L + M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 192 LGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               P  + +S +VLLG      L  G+  +  +L  + P  +D  A T ++S YC+ G 
Sbjct: 139 ----PERNHVSYTVLLG----GLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGR 189

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + +A  LF E+ +++VV+W AMISGYAQ+G+   A +LF+ M +     + +++ A+L+ 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVG 245

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              AG V+   + F++M  ++ +AA       M+   G+ G +  A  + +KM
Sbjct: 246 YIQAGHVEDAAELFNAM-PEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKM 293



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 135/273 (49%), Gaps = 33/273 (12%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A I+     G ++ A   F+  P+++  ++ A+++GY +    D A  LF  MP+++L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS-LSSVLLGCSHLS--SLQLGKQVH 221
           ++NA+I+G          L L R  +     P+A++ L+S+    S +S  SL  G   H
Sbjct: 81  SYNALISG----------LSLRRQTL-----PDAAAALASIPFPPSVVSFTSLLRGYVRH 125

Query: 222 QLV------FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            L+      F+    ++  + T L+      G + +A +LF E+  +DVV W AM+SGY 
Sbjct: 126 GLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYC 185

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           Q G+  +A  LFD+M     K + +++ A++      G V+L  + F+ M     ++   
Sbjct: 186 QAGRITEARALFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS--- 238

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
             +T M+    +AG + +A +L   MP  P  A
Sbjct: 239 --WTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 17/571 (2%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           +AG+ + + + ++A++LFDK+P+ + +S+N ++S  + N   +  A   F ++P ++  S
Sbjct: 1   MAGYFQNK-RPREARKLFDKMPETNTISWNGLVSGYVQNGM-ISEARKVFDKMPERNVVS 58

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           W  MI G+VQ+  + +A  LF  MPE+N VSW+ M+ G IE G++D+A +LF + PVK V
Sbjct: 59  WTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDV 118

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG-------------YVENSWA 179
           VA T MI G    G++  A ++FDEMP +N+V W +MI+G             Y    + 
Sbjct: 119 VASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE 178

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + L L  +M   G+RP+  S+ SVL  C  L+SL  G+QVH  + +S    D    + L
Sbjct: 179 LEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVL 238

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I+MY KCGDL  A ++F     KD+V WN++I+GYAQHG GEKAL +F  M    + PD 
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDE 298

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           ITF+ +L AC++ G V  G++ F+SM + Y +  K +HY CMVDLLGRAGKL EA++LI+
Sbjct: 299 ITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIE 358

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP +    ++G LL ACR HK LDLAE AA  L  L P N AG Y+ L+N+Y++  +W 
Sbjct: 359 NMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEP-NNAGPYILLSNLYSSQSRWK 417

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLA 478
           DV  +R +M+  N+ K PG SWIEV   VH F  G    HPE   I +KL +L   ++ A
Sbjct: 418 DVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREA 477

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GY PD  F +H V EE K   L  HSEKLA+A+GL+KVP G PIRV KNLRVCGD H   
Sbjct: 478 GYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTI 537

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           K I+ +  REII+RDT RFHHFKDG CSC D
Sbjct: 538 KLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 139/300 (46%), Gaps = 25/300 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W  +L G  +  G++ +A++LFD +P  DVV+   M+   L +   ++ A +
Sbjct: 82  MPERNVVSWTVMLGGLIED-GRVDEARQLFDMMPVKDVVASTNMIDG-LCSEGRLIEARE 139

Query: 61  FFQRLPIKDTASWNTMISG-------------FVQKKNMAKARDLF-LAMPEKNSVSWSA 106
            F  +P ++  +W +MISG             + +K    +A  LF L   E    S+ +
Sbjct: 140 IFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPS 199

Query: 107 MISGYIECGQLDK-------AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +IS    CG L           +L +      +   + +I+ Y+K G +  A+++FD   
Sbjct: 200 VISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFS 259

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
           +K++V WN++IAGY ++ + E  L++   M    I P+  +   VL  CS+   ++ G +
Sbjct: 260 SKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLE 319

Query: 220 VHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQH 277
           + + +  K  +   T     ++ +  + G L +A  L   +    D + W A++     H
Sbjct: 320 IFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTH 379


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/572 (44%), Positives = 357/572 (62%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V +  +L GF    G++ +A++LFD++P  DVV+   MLS     +  +  A  
Sbjct: 138 MPERNHVTYTVLLGGFLDA-GRVNEARKLFDEMPDKDVVARTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MP++N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF   P   V A  AM+ G+ + G VD A+ +F+ M  ++  TW+AMI  Y +N +  
Sbjct: 256 EDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLM 315

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L   R M+  GIRPN +S  S+L  C+ L++   G+++H  + +     D  A++ LI
Sbjct: 316 EALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALI 375

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+L+ A ++F   + KDVV WN+MI+GYAQHG GE+AL +FD ++   M PD I
Sbjct: 376 TMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGI 435

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T++ +L AC++ G V  G + F+SM  +  I     HY+CMVDLLGRAG + EA+DLI  
Sbjct: 436 TYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINN 495

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P   I+G L+ ACR+HK  ++AE AA  L  L P  +AG YV L++IY +  +W+D
Sbjct: 496 MPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPG-SAGPYVLLSHIYTSTGRWED 554

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 479
            + +R  +   N+ K PG SWIE   +VH F SGD + HPE   I   L+EL+  +  +G
Sbjct: 555 ASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESG 614

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y  D  F LH V EE K Q L +HSE+ A+A+GL+KVP G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIK 674

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 675 LITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 167/340 (49%), Gaps = 44/340 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-DDVVAAFDFFQRLPIKDTASWNTMIS- 78
           G ++ A+  FD +P     SYN +++    N   D  AA   F R+P +D  S+N +I+ 
Sbjct: 31  GNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPD--AALGLFHRMPSRDLGSYNALIAG 88

Query: 79  --------------------------------GFVQKKNMAKARDLFLAMPEKNSVSWSA 106
                                           G+V+   +A A  LF  MPE+N V+++ 
Sbjct: 89  LSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTV 148

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           ++ G+++ G++++A +LF   P K VVA TAM+SGY + G++  A  LFDEMP +N+V+W
Sbjct: 149 LLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSW 208

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            AMI+GY +N       KL  +M       N  S +++L+G      ++  + +   +  
Sbjct: 209 TAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLVGYIQAGHVEDAEDLFNAMPD 264

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
            P+     A   ++  + + G ++ A  +F  +  +D  TW+AMI  Y Q+    +AL  
Sbjct: 265 HPV----AACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALST 320

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           F +M   G++P+  +F+++L  C      D G +   +M+
Sbjct: 321 FREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAML 360



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 141/265 (53%), Gaps = 21/265 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I+  V+  N+  AR  F AMP + + S++A+I+GY      D A+ LF   P + + 
Sbjct: 21  NARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLG 80

Query: 134 AWTAMISG--YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           ++ A+I+G    +    D A  L       ++V++ +++ GYV +    D ++L   M  
Sbjct: 81  SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQM-- 138

Query: 192 LGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               P  + ++ +VLLG      L  G+  +  +L  + P  KD  A T ++S YC+ G 
Sbjct: 139 ----PERNHVTYTVLLG----GFLDAGRVNEARKLFDEMP-DKDVVARTAMLSGYCQAGR 189

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + +A  LF E+ +++VV+W AMISGYAQ+GK   A +LF+ M D     + +++ A+L+ 
Sbjct: 190 ITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLVG 245

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAA 333
              AG V+     F++M  D+ +AA
Sbjct: 246 YIQAGHVEDAEDLFNAM-PDHPVAA 269


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/574 (45%), Positives = 354/574 (61%), Gaps = 8/574 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAA 58
           M  K  V+W  +L G   Q G++ DA++LFD +P+ DVV+   M+   C     D+  A 
Sbjct: 143 MPHKNVVSWTVMLGGLL-QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARAL 201

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD    +P ++  +W  M+SG+ +   +  AR LF  MPE+N VSW+AM+ GY   G++ 
Sbjct: 202 FD---EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMR 258

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A  LF   PVK VV    MI G+   G+VD A ++F  M  ++  TW+AMI  Y    +
Sbjct: 259 EASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGY 318

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             + L L R M   G+  N  SL SVL  C  L+SL  GKQVH  + +S   +D    + 
Sbjct: 319 ELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASV 378

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI+MY KCG+L  A ++F     KDVV WN+MI+GY+QHG GE+AL +F  M   G+ PD
Sbjct: 379 LITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPD 438

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +TF+ +L AC+++G V  G++ F++M   Y +    +HY C+VDLLGRA ++ EA+ L+
Sbjct: 439 DVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLV 498

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           +KMP +P   ++G LL ACR H +LDLAE A   L  L P N AG YV L+N+YA   +W
Sbjct: 499 EKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKN-AGPYVLLSNMYAYKGRW 557

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD-RVHPELVSIHEKLKELEKRMKL 477
            DV  +R  +K  +V K+PG SWIEV   VH F  GD + HPE   I + L++L   ++ 
Sbjct: 558 RDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLRE 617

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
           AGY PD  F LH V EE K   L +HSEKLA+A+GL+KVP G PIRV KNLRVCGDCH A
Sbjct: 618 AGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSA 677

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K I+ +  REII+RD  RFHHFKDG CSC DYW
Sbjct: 678 IKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 197/363 (54%), Gaps = 15/363 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T  +WN+++A + + R + ++A  LF+K+PQ + VS+N ++S  + N   +  A   F 
Sbjct: 53  RTVSSWNAMVAAYFEAR-QPREALLLFEKMPQRNTVSWNGLISGHIKNGM-LSEARRVFD 110

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P ++  SW +M+ G+V+  ++A+A  LF  MP KN VSW+ M+ G ++ G++D A +L
Sbjct: 111 TMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKL 170

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F + P K VVA T MI GY + G++D A  LFDEMP +N+VTW AM++GY  N   +   
Sbjct: 171 FDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVAR 230

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           KL  +M       N  S +++LLG +H   ++        +F +   K       +I  +
Sbjct: 231 KLFEVM----PERNEVSWTAMLLGYTHSGRMREASS----LFDAMPVKPVVVCNEMIMGF 282

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
              G+++ A ++F  ++ +D  TW+AMI  Y + G   +AL LF +M+ EG+  +  + +
Sbjct: 283 GLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLI 342

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 361
           ++L  C     +D G Q    +V         D Y  + ++ +  + G LV A  +  + 
Sbjct: 343 SVLSVCVSLASLDHGKQVHAQLVRS---EFDQDLYVASVLITMYVKCGNLVRAKQVFNRF 399

Query: 362 PFK 364
           P K
Sbjct: 400 PLK 402



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 193/405 (47%), Gaps = 100/405 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + ++ T + +  +A +A+  G+L  A+++FD+ P                          
Sbjct: 17  VRLQCTTSSSYAIACYARN-GQLDHARKVFDETP-------------------------- 49

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
               LP +  +SWN M++ + + +   +A  LF  MP++N+VSW+ +ISG+I+ G L +A
Sbjct: 50  ----LPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEA 105

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F   P ++VV+WT+M+ GY++ G V  AE+LF  MP KN+V+W  M+ G ++    +
Sbjct: 106 RRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVD 165

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           D  KL  MM      P                                  KD  A+T +I
Sbjct: 166 DARKLFDMM------PE---------------------------------KDVVAVTNMI 186

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             YC+ G L++A  LF E+ +++VVTW AM+SGYA++GK + A +LF+ M +     + +
Sbjct: 187 GGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEV 242

Query: 301 TFVALLLACNHAGLVDLGIQYFDS-----------MVNDYGIAAKPDH------------ 337
           ++ A+LL   H+G +      FD+           M+  +G+  + D             
Sbjct: 243 SWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERD 302

Query: 338 ---YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
              ++ M+ +  R G  +EA+ L ++M  +     F +L+S   V
Sbjct: 303 NGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSV 347



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 34/338 (10%)

Query: 139 ISGYMKFGKVDLAEKLFDE--MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           I+ Y + G++D A K+FDE  +P + + +WNAM+A Y E     + L L   M      P
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM------P 82

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
             +++S   L   H+ +  L +   + VF +   ++  + T ++  Y + GD+ +A +LF
Sbjct: 83  QRNTVSWNGLISGHIKNGMLSEA--RRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLF 140

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  K+VV+W  M+ G  Q G+ + A +LFD M ++    D +    ++      G +D
Sbjct: 141 WHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLD 196

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
                FD M     +      +T MV    R GK+  A  L + MP + + +    LL  
Sbjct: 197 EARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGY 251

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN---- 432
               +  +     A +LF+  P        ++   +    + D   R+   MKE +    
Sbjct: 252 THSGRMRE-----ASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTW 306

Query: 433 -----VVKMPGYSWIEVGTVVHEFRSGDRVH-PELVSI 464
                V +  GY    +G      R G  ++ P L+S+
Sbjct: 307 SAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISV 344



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 22/207 (10%)

Query: 233 TTALTPLISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           TT+ +  I+ Y + G L+ A K+F E  +  + V +WNAM++ Y +  +  +AL LF+KM
Sbjct: 22  TTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM 81

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
                  +++++  L+      G++    + FD+M +   ++     +T MV    R G 
Sbjct: 82  PQR----NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVS-----WTSMVRGYVRNGD 132

Query: 351 LVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           + EA  L   MP K       + G LL   RV          A  LF++ P         
Sbjct: 133 VAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDD--------ARKLFDMMPEKDVVAVTN 184

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVV 434
           +   Y    + D+   +   M + NVV
Sbjct: 185 MIGGYCEEGRLDEARALFDEMPKRNVV 211


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/572 (43%), Positives = 353/572 (61%), Gaps = 4/572 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W  +  G     G++  A++L+D +P  DVV+   M+   L     V  A  
Sbjct: 136 MPERNEVSWTVMFGGLIDD-GRIDKARKLYDMMPVKDVVASTNMIGG-LCREGRVDEARL 193

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +  ++  +W TMI+G+ Q   +  AR LF  MPEK  VSW++M+ GY   G+++ A
Sbjct: 194 IFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            E F+V P+K V+A  AMI G+ + G++  A ++FD M  ++  TW  MI  Y    +  
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L L   M   G+RP+  SL S+L  C+ L+SLQ G+QVH  + +     D    + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+L  A  +F     KD++ WN++ISGYA HG GE+AL++F +M   G  P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T +A+L AC++AG ++ G++ F+SM + + +    +HY+C VD+LGRAG++ +A++LI+ 
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           M  KP   ++G LL AC+ H RLDLAE AA  LF   P N AG YV L++I A+  KW D
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDN-AGTYVLLSSINASRSKWGD 552

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAG 479
           VA +R +M+ NNV K PG SWIEVG  VH F R G + HPE   I   L++ +  ++ AG
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAG 612

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y PD    LH V EE K   L  HSE+LA+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IS + +REII+RD  RFHHF +G CSC DYW
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 186/328 (56%), Gaps = 14/328 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +  K   +WNS+++G+    G  K+A++LFD++ + +VVS+N ++S  + N   +V A +
Sbjct: 43  LQFKAIGSWNSIVSGYFSN-GLPKEARQLFDEMSERNVVSWNGLVSGYIKNRM-IVEARN 100

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+ +P ++  SW  M+ G++Q+  + +A  LF  MPE+N VSW+ M  G I+ G++DKA
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKA 160

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +L+ + PVK VVA T MI G  + G+VD A  +FDEM  +N+VTW  MI GY +N+  +
Sbjct: 161 RKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVD 220

Query: 181 DGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
              KL  +M      P  + +S  S+LLG +    ++  ++  +++   P+     A   
Sbjct: 221 VARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNA 270

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +I  + + G++  A ++F  ++ +D  TW  MI  Y + G   +AL LF +M+ +G++P 
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMV 326
             + +++L  C     +  G Q    +V
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLV 358



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 43/268 (16%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A  FF  L  K   SWN+++SG+       +AR LF  M E+N VSW+ ++SGYI+   +
Sbjct: 36  ARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMI 95

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
            +A  +F++ P ++VV+WTAM+ GYM+ G V  AE LF  MP +N V+W  M  G +++ 
Sbjct: 96  VEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDG 155

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             +   KL  MM                                      P+ KD  A T
Sbjct: 156 RIDKARKLYDMM--------------------------------------PV-KDVVAST 176

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            +I   C+ G +++A  +F E++ ++VVTW  MI+GY Q+ + + A +LF+ M ++    
Sbjct: 177 NMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK---- 232

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSM 325
             +++ ++LL    +G ++   ++F+ M
Sbjct: 233 TEVSWTSMLLGYTLSGRIEDAEEFFEVM 260


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/573 (43%), Positives = 359/573 (62%), Gaps = 5/573 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L GF  Q G++ DA +L++ IP  D ++   M+   L     V  A +
Sbjct: 136 MPEKNKVSWTVMLIGFL-QDGRIDDACKLYEMIPDKDNIARTSMIHG-LCKEGRVDEARE 193

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +  +   +W TM++G+ Q   +  AR +F  MPEK  VSW++M+ GY++ G+++ A
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF+V PVK V+A  AMISG  + G++  A ++FD M  +N  +W  +I  +  N +  
Sbjct: 254 EELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L L  +M   G+RP   +L S+L  C+ L+SL  GKQVH  + +     D    + L+
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDS 299
           +MY KCG+L  +  +F     KD++ WN++ISGYA HG GE+AL++F +M   G  KP+ 
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TFVA L AC++AG+V+ G++ ++SM + +G+     HY CMVD+LGRAG+  EA+++I 
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            M  +P  A++G+LL ACR H +LD+AEF A  L  + P N +G Y+ L+N+YA+  +W 
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPEN-SGTYILLSNMYASQGRWA 552

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLA 478
           DVA +R  MK   V K PG SW EV   VH F R G   HPE  SI + L EL+  ++ A
Sbjct: 553 DVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREA 612

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GY PD  +ALH V EE K   L +HSE+LA+A+ L+K+  G PIRV KNLRVC DCH A 
Sbjct: 613 GYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAI 672

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K IS +++REII+RD  RFHHF++G CSC DYW
Sbjct: 673 KIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 201/368 (54%), Gaps = 25/368 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K+  +WNS++AG+       +DA++LFD++P  +++S+N ++S  + N + +  A   F 
Sbjct: 46  KSISSWNSMVAGYFANLMP-RDARKLFDEMPDRNIISWNGLVSGYMKNGE-IDEARKVFD 103

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P ++  SW  ++ G+V    +  A  LF  MPEKN VSW+ M+ G+++ G++D A +L
Sbjct: 104 LMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKL 163

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           +++ P K  +A T+MI G  K G+VD A ++FDEM  ++++TW  M+ GY +N+  +D  
Sbjct: 164 YEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDAR 223

Query: 184 KLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           K+  +M      P  + +S  S+L+G      ++  +++ +++   P+     A   +IS
Sbjct: 224 KIFDVM------PEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPV----IACNAMIS 273

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
              + G++  A ++F  ++ ++  +W  +I  + ++G   +AL LF  M+ +G++P   T
Sbjct: 274 GLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPT 333

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            +++L  C     +  G Q    +V      D  +A      + ++ +  + G+LV++  
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA------SVLMTMYIKCGELVKSKL 387

Query: 357 LIKKMPFK 364
           +  + P K
Sbjct: 388 IFDRFPSK 395



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 53/339 (15%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F     K  +SWN+M++G+        AR LF  MP++N +SW+ ++SGY++ G++
Sbjct: 36  ARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEI 95

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           D+A ++F + P ++VV+WTA++ GY+  GKVD+AE LF +MP KN V+W  M+ G++++ 
Sbjct: 96  DEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDG 155

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             +D  KL  M+      P+                                 KD  A T
Sbjct: 156 RIDDACKLYEMI------PD---------------------------------KDNIART 176

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            +I   CK G +++A ++F E+  + V+TW  M++GY Q+ + + A ++FD M ++    
Sbjct: 177 SMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK---- 232

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
             +++ ++L+     G ++   + F+ M     IA        M+  LG+ G++ +A  +
Sbjct: 233 TEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC-----NAMISGLGQKGEIAKARRV 287

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
              M  +   A + T++   ++H+R    E  A++LF L
Sbjct: 288 FDSMKER-NDASWQTVI---KIHERNGF-ELEALDLFIL 321


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/571 (43%), Positives = 353/571 (61%), Gaps = 4/571 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W  +  G     G++ DA++L+D +P  DVV+   M+   L     V  A +
Sbjct: 136 MPERNEVSWTVMFGGLIDG-GRIDDARKLYDMMPGKDVVASTNMIGG-LCREGRVDEARE 193

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +  ++  +W TMI+G+ Q K +  AR LF  MPEK  VSW++M+ GY   G+++ A
Sbjct: 194 IFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            E F+V P+K V+A  AMI    + G++  A ++FD+M  ++  TW  MI  Y    +  
Sbjct: 254 EEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFEL 313

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L+L   M   G+RP+  SL S+L  C+ L+SLQ G+QVH  + +     D    + L+
Sbjct: 314 EALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLM 373

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+L  A  +F     KD++ WN++ISGYA HG GE+AL++F +M   G  P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKV 433

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T +A+L AC++ G ++ G++ F+SM + + +    +HY+C VD+LGRAGK+ +A++LI  
Sbjct: 434 TLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINS 493

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           M  KP   ++G LL AC+ H RLDLAE AA  LF + P N AG Y+ L++I A+  KW D
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPEN-AGPYILLSSINASRSKWGD 552

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAG 479
           VA +R +M+  NV K PG SWIEVG  VH F R G R HPE   I   L++ +  ++ AG
Sbjct: 553 VAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAG 612

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y PD    LH V EE K   L  HSE+LA+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
            IS + +REII+RD  RFHHF +G CSC DY
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 201/368 (54%), Gaps = 19/368 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +  K   +WNS+++G+    G  ++A+++FD++P+ ++VS+N ++S  + N   +  A +
Sbjct: 43  LRYKAIGSWNSIVSGYFAN-GLPREARQMFDEMPERNIVSWNGLVSGYIKNRM-IEEARN 100

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+ +P ++  SW  M+ G+VQ+  + +A  LF  MPE+N VSW+ M  G I+ G++D A
Sbjct: 101 VFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDA 160

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +L+ + P K VVA T MI G  + G+VD A ++FDEM  +N++TW  MI GY +N   +
Sbjct: 161 RKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVD 220

Query: 181 DGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
              KL  +M      P  + +S  S+LLG +    ++  ++  +++   P+     A   
Sbjct: 221 VARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNA 270

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +I    + G++  A ++F +++ +D  TW  MI  Y + G   +AL LF +M+ +G++P 
Sbjct: 271 MIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPS 330

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVD 356
             + +++L  C     +  G Q    +V         D Y  + ++ +  + G+LV+A  
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVR---CQFDGDVYVASVLMTMYVKCGELVKAKL 387

Query: 357 LIKKMPFK 364
           +  + P K
Sbjct: 388 VFDRFPSK 395



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 169/343 (49%), Gaps = 49/343 (14%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A  FF  L  K   SWN+++SG+       +AR +F  MPE+N VSW+ ++SGYI+   +
Sbjct: 36  ARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMI 95

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           ++A  +F++ P ++VV+WTAM+ GY++ G V  AE LF  MP +N V+W  M  G ++  
Sbjct: 96  EEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGG 155

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             +D  KL  MM G                                       KD  A T
Sbjct: 156 RIDDARKLYDMMPG---------------------------------------KDVVAST 176

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            +I   C+ G +++A ++F E++ ++V+TW  MI+GY Q+ + + A +LF+ M ++    
Sbjct: 177 NMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEK---- 232

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
             +++ ++LL    +G ++   ++F+ M     IA        M+  LG  G++V+A  +
Sbjct: 233 TEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIAC-----NAMIVALGEVGEIVKARRV 287

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAE-FAAMNLFNLNPA 399
             +M  +      G + +  R    L+  E FA M    + P+
Sbjct: 288 FDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPS 330


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/574 (44%), Positives = 356/574 (62%), Gaps = 9/574 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAA 58
           M  +  V+W  ++ G  K+  ++ DA++LFD IP+ DVV    M+   C +   D+   A
Sbjct: 140 MPRRNVVSWTVMIGGLLKE-SRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDE---A 195

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            + F  + +++  +W TM+SG+ +   +  AR LF  MPE+N VSW+AM+ GY + G++ 
Sbjct: 196 RELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMK 255

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A ELF+  PVK +VA   MI  +   G++  A  +F+ M  ++  TWNAMI  +     
Sbjct: 256 EAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGL 315

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             + L L   M   G+  N  S+ SVL  C+ L+SL  G+QVH  + +S   +D    + 
Sbjct: 316 DLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASV 375

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI+MY KCGDL  A  +F     KDVV WN+MI+GY+QHG GE+AL +F  M   G++PD
Sbjct: 376 LITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPD 435

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +TF+ +L AC+++G V  G + F++M   Y +    +HY CMVDLLGRAG++ EA++L+
Sbjct: 436 EVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELV 495

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           +KMP +P   ++G LL ACR H +LDLAE A   L  L P N AG YV L+++YA   +W
Sbjct: 496 EKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKN-AGPYVLLSHMYATKGRW 554

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD-RVHPELVSIHEKLKELEKRMKL 477
            DV  +R  +    V+K PG SWIEV   VH F  GD + HPE   I + L++L   ++ 
Sbjct: 555 RDVEVLRKKIN-RRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLRE 613

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
           AGY PD  F LH V EE K   L +HSE+LA+A+GL+KVP G PIRV KNLRVCGDCH A
Sbjct: 614 AGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSA 673

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K I+ +  REII+RD  RFHHFKDG+CSC D+W
Sbjct: 674 IKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 180/366 (49%), Gaps = 46/366 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + TV++N +++G+ K  G + DA+++FD +P+ +VVS+  M+    +    V  A  
Sbjct: 78  MPQRNTVSFNGMISGYVKN-GMVADARKVFDVMPERNVVSWTSMVRG-YVQEGMVEEAEK 135

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MI G +++  +  A+ LF  +PEK+ V  + MI GY + G+LD+A
Sbjct: 136 LFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEA 195

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF    V++V  WT M+SGY K G+VD+A KLF+ MP +N V+W AM+ GY ++   +
Sbjct: 196 RELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMK 255

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           +  +L                                       F++   K   A   +I
Sbjct: 256 EAFEL---------------------------------------FEAMPVKWIVACNEMI 276

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             +   G++  A  +F  ++ +D  TWNAMI  + + G   +AL LF +M+ EG+  +  
Sbjct: 277 LQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFP 336

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLI 358
           + +++L  C     +D G Q    +V         D Y  + ++ +  + G LV A  + 
Sbjct: 337 SMISVLSVCASLASLDHGRQVHARLVRS---EFDQDLYVASVLITMYVKCGDLVRAKGIF 393

Query: 359 KKMPFK 364
            +  FK
Sbjct: 394 NRFLFK 399



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 172/330 (52%), Gaps = 53/330 (16%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           LP +  ASWN M+S + +      A  LF  MP++N+VS++ MISGY++ G +  A ++F
Sbjct: 47  LPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVF 106

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
            V P ++VV+WT+M+ GY++ G V+ AEKLF EMP +N+V+W  MI G ++ S  +D  K
Sbjct: 107 DVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKK 166

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L  M+      P                                  KD   +T +I  YC
Sbjct: 167 LFDMI------PE---------------------------------KDVVVVTNMIGGYC 187

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           + G L++A +LF E++ ++V TW  M+SGYA++G+ + A +LF+ M +     + +++ A
Sbjct: 188 QVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTA 243

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L+    +G +    + F++M   + +A        M+   G AG++  A  + + M  +
Sbjct: 244 MLMGYTQSGRMKEAFELFEAMPVKWIVACNE-----MILQFGLAGEMHRARMMFEGMKER 298

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +    GT  +  +V +R  L +  A+ LF
Sbjct: 299 DE----GTWNAMIKVFERKGL-DLEALGLF 323



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 34/241 (14%)

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGK 279
           ++V    LC +T+A    IS Y + GD+ +A K+F    + ++ + +WNAM+S Y +  K
Sbjct: 12  RMVQARSLCSNTSA----ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHK 67

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
              AL LFD+M     + ++++F  ++      G+V    + FD M     ++     +T
Sbjct: 68  PRDALLLFDQMP----QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS-----WT 118

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            MV    + G + EA  L  +MP +       + G LL   R+          A  LF++
Sbjct: 119 SMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDD--------AKKLFDM 170

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P         +   Y  + + D+   +   MK  NV     ++W    T+V  +    R
Sbjct: 171 IPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV-----FTWT---TMVSGYAKNGR 222

Query: 457 V 457
           V
Sbjct: 223 V 223


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/616 (41%), Positives = 365/616 (59%), Gaps = 50/616 (8%)

Query: 3    VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
             +  ++WNS++AG A Q G  + A +LF ++   ++   NI  + +L    +   A +  
Sbjct: 494  ARDVISWNSMIAGHA-QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP-EALELG 551

Query: 63   QRLPIKDTASW--------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +++  + T S         N +I+ +++  ++  AR++F ++  ++ +SW+AMI G  + 
Sbjct: 552  KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQ 611

Query: 115  GQLDKAVELF------KVAPVKS--------------------VVAW------------- 135
            G+  KA+ELF         PVKS                    V+A+             
Sbjct: 612  GEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG 671

Query: 136  TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             A+IS Y K G +  A ++FD+MP++++V+WN +IAGY +N   +  ++    M    + 
Sbjct: 672  NALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVV 731

Query: 196  PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            PN  S  S+L  CS  S+L+ GK+VH  + K  L  D      LISMY KCG   +A ++
Sbjct: 732  PNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEV 791

Query: 256  FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
            F  I  K+VVTWNAMI+ YAQHG   KAL  F+ M+ EG+KPD  TF ++L ACNHAGLV
Sbjct: 792  FDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLV 851

Query: 316  DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
              G Q F SM ++YG+    +HY C+V LLGRA +  EA  LI +MPF P  A++ TLL 
Sbjct: 852  LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLG 911

Query: 376  ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
            ACR+H  + LAE AA N   LN  N A  Y+ L+N+YAA  +WDDVA+IR  M+   + K
Sbjct: 912  ACRIHGNIALAEHAANNALKLNARNPA-VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 970

Query: 436  MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
             PG SWIEV  ++HEF + DR HPE   I+ +LK L   M+ AGY PD +  LH +G+  
Sbjct: 971  EPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAH 1030

Query: 496  KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
            +E  L  HSE+LAIA+GLIK P GTPIR+FKNLR+CGDCH A+K+IS +  REII RD+ 
Sbjct: 1031 QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 1090

Query: 556  RFHHFKDGTCSCGDYW 571
            RFH FK+G CSC DYW
Sbjct: 1091 RFHSFKNGKCSCEDYW 1106



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 203/413 (49%), Gaps = 60/413 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V +N+++A  A Q G   +A E + ++ + D V+ N      +LN+     A +  +
Sbjct: 293 RDVVVYNALIAALA-QHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKALEAGK 350

Query: 64  RLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
            +           D    N +IS + +  ++ KAR+LF  MP+++ +SW+A+I+GY    
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410

Query: 116 QLDKAVELFK------VAPVK-------SVVAWT-------------------------- 136
              +A+ L+K      V P +       S  A +                          
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLAN 470

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+++ Y + G +  A+ +F+    +++++WN+MIAG+ ++   E   KL + M    + P
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  + +SVL GC +  +L+LGKQ+H  + +S L  D      LI+MY +CG L+DA  +F
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +Q +DV++W AMI G A  G+  KA+ LF +M++EG +P   TF ++L  C  +  +D
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLD 650

Query: 317 LGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G +    ++N     D G+         ++    ++G + +A ++  KMP +
Sbjct: 651 EGKKVIAYILNSGYELDTGVG------NALISAYSKSGSMTDAREVFDKMPSR 697



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 234/532 (43%), Gaps = 86/532 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL---------- 49
           +  V++N++L G   Q+  +K+   LF ++      PD V+Y  +L              
Sbjct: 192 RDVVSYNTML-GLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 50  ---------LNSD---------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
                    LNSD               DV +A   F+    +D   +N +I+   Q  +
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGH 310

Query: 86  MAKARDLFLAMPEK----NSVSWSAMI-----SGYIECGQLDKAVELFKVAPVKSVVAWT 136
             +A + +  M       N  ++ +++     S  +E G+L  +  + +      V    
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS-HISEDGHSSDVQIGN 369

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+IS Y + G +  A +LF  MP ++L++WNA+IAGY       + ++L + M   G++P
Sbjct: 370 ALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKP 429

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
              +   +L  C++ S+   GK +H+ + +S +  +      L++MY +CG L +A  +F
Sbjct: 430 GRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
              Q +DV++WN+MI+G+AQHG  E A +LF +M++E ++PD+ITF ++L  C +   ++
Sbjct: 490 EGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALE 549

Query: 317 LGIQYF---------------DSMVNDY----------GIAAKPDH-----YTCMVDLLG 346
           LG Q                 ++++N Y           +     H     +T M+    
Sbjct: 550 LGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609

Query: 347 RAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
             G+ ++A++L  +M    F+P  + F ++L  C     LD  +     + N       G
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTG 669

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIEVGTVVHEF 451
               L + Y+      D   +   M   ++V     + GY+   +G    EF
Sbjct: 670 VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEF 721



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 172/335 (51%), Gaps = 10/335 (2%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           PD+   N++++ + +    V+ A   F+ +P +D  SWN++IS + Q+    KA  LF  
Sbjct: 60  PDIFLSNLLIN-MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 118

Query: 96  MPEK----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGK 147
           M       N +++ ++++      +L+       ++ K    +      +++S Y K G 
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A ++F  +  +++V++N M+  Y + ++ ++ L L   M   GI P+  +  ++L  
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDA 238

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
            +  S L  GK++H+L  +  L  D    T L++M  +CGD++ A + F     +DVV +
Sbjct: 239 FTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVY 298

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NA+I+  AQHG   +A   + +M+ +G+  +  T++++L AC+ +  ++ G +   S ++
Sbjct: 299 NALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHIS 357

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + G ++       ++ +  R G L +A +L   MP
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 209/461 (45%), Gaps = 90/461 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY--------------- 41
           M  +  ++WN+++AG+A++  +  +A  L+ ++     +P  V++               
Sbjct: 391 MPKRDLISWNAIIAGYARREDR-GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 42  ---------------NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                          N  L+  L+N       ++ A + F+    +D  SWN+MI+G  Q
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMISG--YIECGQLDKAV--ELFKVAPVKSVVA 134
             +   A  LF  M     E +++++++++SG    E  +L K +   + +      V  
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNL 569

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I+ Y++ G +  A  +F  +  +++++W AMI G  +       ++L   M   G 
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF 629

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP  S+ SS+L  C+  + L  GK+V   +  S    DT     LIS Y K G + DA +
Sbjct: 630 RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDARE 689

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---- 310
           +F ++  +D+V+WN +I+GYAQ+G G+ A+    +M+++ + P+  +FV+LL AC+    
Sbjct: 690 VFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSA 749

Query: 311 -------HAGLVDLGIQ------------------------YFDSMVNDYGIAAKPDHYT 339
                  HA +V   +Q                         FD+++    +      + 
Sbjct: 750 LEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVT-----WN 804

Query: 340 CMVDLL---GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
            M++     G A K +   + ++K   KP  + F ++LSAC
Sbjct: 805 AMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSAC 845



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 185/413 (44%), Gaps = 80/413 (19%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP------------------ 66
           DA ++F ++P+ DV+S+N ++SC          AF  F+ +                   
Sbjct: 80  DAHQVFKEMPRRDVISWNSLISCYAQQGFK-KKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 67  ---------------------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
                                 +D    N+++S + +  ++ +AR +F  +  ++ VS++
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 106 AMISGYIECGQLDKAVELF------KVAPVK----------------------------- 130
            M+  Y +   + + + LF       ++P K                             
Sbjct: 199 TMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 131 ----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                +   TA+++  ++ G VD A++ F     +++V +NA+IA   ++    +  +  
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G+  N ++  S+L  CS   +L+ GK +H  + +     D      LISMY +C
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           GDL  A +LF  + ++D+++WNA+I+GYA+     +A+RL+ +M+ EG+KP  +TF+ LL
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            AC ++     G    + ++   GI +       ++++  R G L+EA ++ +
Sbjct: 439 SACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 2/243 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y+K   V  A ++F EMP +++++WN++I+ Y +  + +   +L   M   G  PN
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  S+L  C   + L+ GK++H  + K+   +D      L+SMY KCGDL  A ++F 
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFA 187

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I  +DVV++N M+  YAQ    ++ L LF +M  EG+ PD +T++ LL A     ++D 
Sbjct: 188 GISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE 247

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +     V + G+ +     T +V +  R G +  A    K    +    ++  L++A 
Sbjct: 248 GKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAAL 305

Query: 378 RVH 380
             H
Sbjct: 306 AQH 308



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 120/232 (51%), Gaps = 9/232 (3%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L  C+    L   K++H  + ++ +  D      LI+MY KC  + DA ++F E+ R+
Sbjct: 32  ALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRR 91

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           DV++WN++IS YAQ G  +KA +LF++M++ G  P+ IT++++L AC     ++ G +  
Sbjct: 92  DVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG-KKI 150

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-FGTLLS--ACRV 379
            S +   G    P     ++ + G+ G L  A  +   +   P+  + + T+L   A + 
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI--SPRDVVSYNTMLGLYAQKA 208

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI-RLSMKE 430
           + +  L  F  M+   ++P      Y+ L + +      D+  RI +L+++E
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVT--YINLLDAFTTPSMLDEGKRIHKLTVEE 258



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN ++AG+A Q G  + A E   ++ + DVV  N      LLN+    +A +
Sbjct: 694 MPSRDIVSWNKIIAGYA-QNGLGQTAVEFAYQMQEQDVVP-NKFSFVSLLNACSSFSALE 751

Query: 61  FFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +R+  +        D      +IS + +  +  +A+++F  + EKN V+W+AMI+ Y 
Sbjct: 752 EGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYA 811

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           + G   KA+  F     + +      +T+++S     G V    ++F  M ++
Sbjct: 812 QHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESE 864


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/618 (41%), Positives = 364/618 (58%), Gaps = 54/618 (8%)

Query: 3    VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNSDDVVA 57
             +  ++WNS++AG A Q G  + A +LF ++     +PD +++ ++++ C    + + + 
Sbjct: 549  ARDIISWNSMIAGHA-QHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGC---KNPEALE 604

Query: 58   AFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                   L I+     D    N +I+ +++  ++  A ++F ++  +N +SW+AMI G+ 
Sbjct: 605  LGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFA 664

Query: 113  ECGQLDKAVELF------KVAPVKSVVA-------------------------------- 134
            + G+  KA ELF         PVKS  +                                
Sbjct: 665  DQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG 724

Query: 135  -WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
               A+IS Y K G +  A K+FD+MP +++++WN MIAGY +N      L+    M   G
Sbjct: 725  VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 194  IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            +  N  S  S+L  CS  S+L+ GK+VH  + K  +  D      LISMY KCG LE+A 
Sbjct: 785  VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQ 844

Query: 254  KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            ++F     K+VVTWNAMI+ YAQHG   KAL  F+ M  EG+KPD  TF ++L ACNH+G
Sbjct: 845  EVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904

Query: 314  LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            LV  G + F S+ + +G++   +HY C+V LLGRAG+  EA  LI +MPF P  A++ TL
Sbjct: 905  LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 374  LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
            L ACR+H  + LAE AA N   LN  N A  YV L+N+YAA  +WDDVA+IR  M+   +
Sbjct: 965  LGACRIHGNVALAEHAANNALKLNARNPA-VYVLLSNVYAAAGRWDDVAKIRRVMEGRGI 1023

Query: 434  VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
             K PG SWIEV  ++HEF + DR HPE   I+E+LK L   M+ AGY PD ++ LH + +
Sbjct: 1024 RKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDK 1083

Query: 494  EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
            E +E  L  HSE+LAIA+GL+K P GTPIR+FKNLR+CGDCH A+K+IS +  REII RD
Sbjct: 1084 EHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARD 1143

Query: 554  TTRFHHFKDGTCSCGDYW 571
            + RFH FK+G CSC D+W
Sbjct: 1144 SNRFHTFKNGKCSCEDFW 1161



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 206/442 (46%), Gaps = 88/442 (19%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------- 49
           + + +   + LA    + G +  A++  +     DVV YN +++ +              
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYY 374

Query: 50  -LNSDDVVAAFDFFQRL------------------------PIKDTASWNTMISGFVQKK 84
            + SD VV     +  +                           D    N++IS + +  
Sbjct: 375 QMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCG 434

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-----------------VA 127
           ++ +AR+LF  MP+++ +SW+A+I+GY       +A++L+K                 ++
Sbjct: 435 DLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLS 494

Query: 128 PVKSVVAWT----------------------AMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
              +  A++                      A+++ Y + G +  A+ +F+    +++++
Sbjct: 495 ACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN+MIAG+ ++   E   KL   M   G+ P+  + +SVL+GC +  +L+LG+Q+H L+ 
Sbjct: 555 WNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLII 614

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +S L  D      LI+MY +CG L+DA ++F  ++ ++V++W AMI G+A  G+  KA  
Sbjct: 615 ESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFE 674

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAAKPDHYTC 340
           LF +M+++G KP   TF ++L AC  +  +D G +    ++N     D G+         
Sbjct: 675 LFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG------NA 728

Query: 341 MVDLLGRAGKLVEAVDLIKKMP 362
           ++    ++G + +A  +  KMP
Sbjct: 729 LISAYSKSGSMTDARKVFDKMP 750



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 206/453 (45%), Gaps = 47/453 (10%)

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN---- 100
           L+ + +   DV  A    +    +D   +N +I+   Q  +  +A + +  M        
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMN 384

Query: 101 -----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
                SV  +   S  +  G+L  +  + +V     V    ++IS Y + G +  A +LF
Sbjct: 385 RTTYLSVLNACSTSKALGAGELIHS-HISEVGHSSDVQIGNSLISMYARCGDLPRARELF 443

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           + MP ++L++WNA+IAGY       + +KL + M   G++P   +   +L  C++ S+  
Sbjct: 444 NTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYS 503

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            GK +H+ + +S +  +      L++MY +CG + +A  +F   + +D+++WN+MI+G+A
Sbjct: 504 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHA 563

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------------- 322
           QHG  E A +LF +MK EG++PD ITF ++L+ C +   ++LG Q               
Sbjct: 564 QHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVN 623

Query: 323 --DSMVNDY-GIAAKPDHY--------------TCMVDLLGRAGKLVEAVDLIKKMP--- 362
             ++++N Y    +  D Y              T M+      G+  +A +L  +M    
Sbjct: 624 LGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDG 683

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           FKP  + F ++L AC     LD  +    ++ N       G    L + Y+      D  
Sbjct: 684 FKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDAR 743

Query: 423 RIRLSMKENNVVK----MPGYSWIEVGTVVHEF 451
           ++   M   +++     + GY+   +G    +F
Sbjct: 744 KVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQF 776



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/520 (22%), Positives = 231/520 (44%), Gaps = 94/520 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCI------- 48
           M  +  ++WNS+++ +A+Q G  K A +LF+++      P  ++Y +I+ +C        
Sbjct: 143 MPRRDVISWNSLISCYAQQ-GFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEY 201

Query: 49  ----------------------LLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                 LLN     +D+ +A   F  +  +D  S+NTM+  + Q
Sbjct: 202 GKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQ 261

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVA 134
           K  + +   LF  M  +    + V++  ++  +     LD+   + K+A  +     +  
Sbjct: 262 KAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV 321

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA+ + +++ G V  A++  +    +++V +NA+IA   ++   E+  +    M   G+
Sbjct: 322 GTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGV 381

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             N ++  SVL  CS   +L  G+ +H  + +     D      LISMY +CGDL  A +
Sbjct: 382 VMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARE 441

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF  + ++D+++WNA+I+GYA+     +A++L+ +M+ EG+KP  +TF+ LL AC ++  
Sbjct: 442 LFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSA 501

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL----------------- 357
              G    + ++   GI +       ++++  R G ++EA ++                 
Sbjct: 502 YSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIA 560

Query: 358 -----------------IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL------F 394
                            +KK   +P    F ++L  C+  + L+L     M +       
Sbjct: 561 GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           ++N  NA      L N+Y       D   +  S++  NV+
Sbjct: 621 DVNLGNA------LINMYIRCGSLQDAYEVFHSLRHRNVM 654



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 210/456 (46%), Gaps = 80/456 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY--------------- 41
           M  +  ++WN+++AG+A++  +  +A +L+ ++     +P  V++               
Sbjct: 446 MPKRDLISWNAIIAGYARREDR-GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 42  ---------------NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                          N  L+  L+N       ++ A + F+    +D  SWN+MI+G  Q
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMISG--YIECGQLDKAVELFKVAP--VKSVVA 134
             +   A  LFL M     E + +++++++ G    E  +L + + +  +       V  
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I+ Y++ G +  A ++F  +  +N+++W AMI G+ +        +L   M   G 
Sbjct: 625 GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P  S+ SS+L  C   + L  GK+V   +  S    DT     LIS Y K G + DA K
Sbjct: 685 KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARK 744

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---- 310
           +F ++  +D+++WN MI+GYAQ+G G  AL+   +M+++G+  +  +FV++L AC+    
Sbjct: 745 VFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSA 804

Query: 311 -------HAGLVDLGIQ-------YFDSMVNDYGIAAKP----DHYT--------CMVDL 344
                  HA +V   +Q          SM    G   +     D++T         M++ 
Sbjct: 805 LEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINA 864

Query: 345 LGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
             + G   +A+D    + K   KP  + F ++LSAC
Sbjct: 865 YAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSAC 900



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 167/337 (49%), Gaps = 14/337 (4%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           PD+   N++++ + +    V  A   F ++P +D  SWN++IS + Q+    KA  LF  
Sbjct: 115 PDIFLSNLLIN-MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 173

Query: 96  M------PEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKF 145
           M      P K  +++ ++++      +L+       ++ +    +      ++++ Y K 
Sbjct: 174 MQTAGFIPSK--ITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKC 231

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
             +  A ++F  +  +++V++N M+  Y + ++ E+ + L   M   GI P+  +  ++L
Sbjct: 232 EDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLL 291

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
              +  S L  GK++H+L     L  D    T L +M+ +CGD+  A +       +DVV
Sbjct: 292 DAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVV 351

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
            +NA+I+  AQHG  E+A   + +M+ +G+  +  T++++L AC+ +  +  G +   S 
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSH 410

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +++ G ++       ++ +  R G L  A +L   MP
Sbjct: 411 ISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP 447



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 2/249 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y+K   V  A ++F +MP +++++WN++I+ Y +  + +   +L   M   G  P+
Sbjct: 123 LINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPS 182

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  S+L  C   + L+ GK++H  + ++   +D      L++MY KC DL  A ++F 
Sbjct: 183 KITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFS 242

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I R+DVV++N M+  YAQ    E+ + LF +M  EG+ PD +T++ LL A     ++D 
Sbjct: 243 GIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDE 302

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +     VN+ G+ +     T +  +  R G +  A   ++    +    ++  L++A 
Sbjct: 303 GKRIHKLAVNE-GLNSDIRVGTALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAAL 360

Query: 378 RVHKRLDLA 386
             H   + A
Sbjct: 361 AQHGHYEEA 369



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 121/242 (50%), Gaps = 10/242 (4%)

Query: 195 RP---NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           RP   N ++   ++  C+   SL   K++H  + ++ +  D      LI+MY KC  + D
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++FL++ R+DV++WN++IS YAQ G  +KA +LF++M+  G  P  IT++++L AC  
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
              ++ G +   S + + G    P     ++++ G+   L  A  +   + ++     + 
Sbjct: 196 PAELEYG-KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYN 253

Query: 372 TLLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI-RLSM 428
           T+L   A + +    +  F  M+   + P      Y+ L + +      D+  RI +L++
Sbjct: 254 TMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT--YINLLDAFTTPSMLDEGKRIHKLAV 311

Query: 429 KE 430
            E
Sbjct: 312 NE 313


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/579 (44%), Positives = 353/579 (60%), Gaps = 47/579 (8%)

Query: 39  VSYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + +N  +   L+N    + ++V A   F +  ++D  S+  +I+G+  K  + +AR+LF 
Sbjct: 159 LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFD 218

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAPVKS----------------- 131
            +P ++ VSW+AMISGY + G++++A+  F      KV P  S                 
Sbjct: 219 EIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQ 278

Query: 132 ----VVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
               V +W               +I  Y+K G ++ A  LF+++  KN+V+WN MI GY 
Sbjct: 279 LGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYT 338

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDT 233
             S  ++ L L R M+   I PN  +  S+L  C++L +L LGK VH  V K+    K+T
Sbjct: 339 HMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNT 398

Query: 234 TAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
            AL T LI MY KCGDL  A ++F  +  K + TWNAMISG+A HG  + AL LF +M  
Sbjct: 399 VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTS 458

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG  PD ITFV +L AC HAGL+ LG +YF SM+ DY ++ K  HY CM+DL GRAG   
Sbjct: 459 EGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFD 518

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA  L+K M  KP  AI+ +LL ACR+H+R++LAE  A +LF L P N +  YV L+NIY
Sbjct: 519 EAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSA-YVLLSNIY 577

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A   +W+DVA+IR  + +N + K+PG S IEV +VVHEF  GD+VHP+   I++ L E++
Sbjct: 578 AGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEID 637

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            R++ AG+VPD    L+ + EE KE +L  HSEKLAIAFGLI    GT IR+ KNLRVCG
Sbjct: 638 MRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCG 697

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +CH ATK IS I  REII RD  RFHHFKDG+CSC DYW
Sbjct: 698 NCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 28/385 (7%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN----- 74
            G L  A  LF  I  P+ V +N M+   L +S+    A +++  +    T         
Sbjct: 75  HGDLSYALSLFKTIRNPNHVIWNHMIRG-LSSSESPFLALEYYVHMISSGTEPNEYTFPS 133

Query: 75  -----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
                T I G  + K +  A  L L + E N+   +++I+ Y + G+L  A  +F  + +
Sbjct: 134 IFKSCTKIRGAHEGKQV-HAHVLKLGL-EHNAFVHTSLINMYAQNGELVNARLVFDKSSM 191

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           +  V++TA+I+GY   G +D A +LFDE+P +++V+WNAMI+GY ++   E+ +     M
Sbjct: 192 RDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEM 251

Query: 190 IGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               + PN S++ SVL  C+   SSLQLG  V   +    L  +   +  LI MY KCGD
Sbjct: 252 RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           LE+A  LF +IQ K+VV+WN MI GY      ++AL LF +M    + P+ +TF+++L A
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPA 371

Query: 309 CNHAGLVDLGI---QYFD----SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           C + G +DLG     Y D    SM N   +      +T ++D+  + G L  A  +   M
Sbjct: 372 CANLGALDLGKWVHAYVDKNMKSMKNTVAL------WTSLIDMYAKCGDLAVAKRIFDCM 425

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLA 386
             K   A +  ++S   +H   D A
Sbjct: 426 NTKSL-ATWNAMISGFAMHGHTDTA 449


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/641 (39%), Positives = 377/641 (58%), Gaps = 82/641 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N++L+ +AK  G L DA+ +FD I   ++VS+  M+   +  + ++  AF  ++ + +  
Sbjct: 86  NTLLSMYAKC-GSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNL-EAFKCYETMKLAG 143

Query: 69  ---DTASWNTMISGFV--------QKKNM---------------------------AKAR 90
              D  ++ ++++ F         QK +M                           +KAR
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVA---------- 134
            +F  +PEKN V+W+ +I+GY + GQ+D A+EL +      VAP K   A          
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 135 ---------------------W--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
                                W   ++I+ Y K G ++ A KLF ++P +++VTW AM+ 
Sbjct: 264 ALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVT 323

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +  + ++ + L R M   GI+P+  + +SVL  CS  + LQ GK++HQ +  +    
Sbjct: 324 GYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL 383

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY-AQHGKGEKALRLFDKM 290
           D    + L+SMY KCG ++DA  +F ++  ++VV W A+I+G  AQHG+  +AL  FD+M
Sbjct: 384 DVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQM 443

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           K +G+KPD +TF ++L AC H GLV+ G ++F SM  DYGI    +HY+C VDLLGRAG 
Sbjct: 444 KKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGH 503

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA ++I  MPF P P+++G LLSACRVH  ++  E AA N+  L+P +  G YV L++
Sbjct: 504 LEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDD-GAYVALSS 562

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYAA  +++D  ++R  M++ +VVK PG SWIEV   VH F   D+ HPE   I+ +L +
Sbjct: 563 IYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGK 622

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L +++K  GYVPD  F LH V EE KE++L  HSE+LAI +GL+K P G PIR+ KNLRV
Sbjct: 623 LTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRV 682

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH ATK+IS +  REII RD  RFHHF DG CSCGD+W
Sbjct: 683 CGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 209/427 (48%), Gaps = 52/427 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQE-------LFDKIPQPDVVSYNIMLSCILLNSD 53
           M ++ T  ++ V  G  ++  +L+  ++       +     QP+    N +LS +     
Sbjct: 38  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLS-MYAKCG 96

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMIS 109
            +  A   F  +  ++  SW  MI  FV      +A   +    LA  + + V++ ++++
Sbjct: 97  SLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLN 156

Query: 110 GYI--ECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            +   E  QL + V  E+ +          T+++  Y K G +  A  +FD +P KN+VT
Sbjct: 157 AFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVT 216

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W  +IAGY +    +  L+LL  M    + PN  + +S+L GC+  ++L+ GK+VH+ + 
Sbjct: 217 WTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYII 276

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +S   ++   +  LI+MYCKCG LE+A KLF ++  +DVVTW AM++GYAQ G  ++A+ 
Sbjct: 277 QSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAIN 336

Query: 286 LFDKMKDEGMKPDSITFVALLLACN----------------HAGLVDLGIQYFDSMVNDY 329
           LF +M+ +G+KPD +TF ++L +C+                HAG  +L +    ++V+ Y
Sbjct: 337 LFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGY-NLDVYLQSALVSMY 395

Query: 330 GIAAKPDHYTCMVDLL-------------------GRAGKLVEAVDLIKKMPFKPQPAIF 370
                 D  + + + +                   GR  + +E  D +KK   KP    F
Sbjct: 396 AKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTF 455

Query: 371 GTLLSAC 377
            ++LSAC
Sbjct: 456 TSVLSAC 462



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 1/185 (0%)

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           ++ L ++  MI  G R  +     +L  C+ L SL+ G++VH  + KS +  +      L
Sbjct: 29  KEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +SMY KCG L DA ++F  I+ +++V+W AMI  +    K  +A + ++ MK  G KPD 
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TFV+LL A  +  L+ LG +    +V + G+  +P   T +V +  + G + +A  +  
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIV-EAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207

Query: 360 KMPFK 364
           ++P K
Sbjct: 208 RLPEK 212


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/607 (39%), Positives = 365/607 (60%), Gaps = 43/607 (7%)

Query: 4    KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
            +T     +++  +A Q G+++ A+ +FD+I  P+VV++N +++    N   +  A D FQ
Sbjct: 456  QTVATKTAMMTAYA-QVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGM-LKEAKDLFQ 513

Query: 64   RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------------ 99
            ++P+K++ASW  MI+GFVQ +   +A +L + +                           
Sbjct: 514  KMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEI 573

Query: 100  ---------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
                           NS   + +IS Y +CG ++    +F+   VK  V+W ++ISG  +
Sbjct: 574  GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSE 633

Query: 145  FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
               +D A  +F++MP +++V+W A+I+ YV+    E  L L   M+  GI+PN  +++S+
Sbjct: 634  NYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSL 693

Query: 205  LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
            L  C +L +++LG+Q H L+FK            LI+MY KCG  ED   +F E+   D+
Sbjct: 694  LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDL 752

Query: 265  VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
            +TWNA++ G AQ+G G++A+++F++M+ EG+ PD ++F+ +L AC+HAGLVD G  +F+S
Sbjct: 753  ITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNS 812

Query: 325  MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
            M   YGI     HYTCMVDLLGRAG L EA  LI+ MP KP   I+  LL ACR+H+ ++
Sbjct: 813  MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVE 872

Query: 385  LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
            L +  A  LF +    +A  YV L+N++A+   WD VA IR  MK+  + K PG SWI+V
Sbjct: 873  LGQRVAERLFQMTKPKSA-TYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQV 931

Query: 445  GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
               +H F +GDR H ++  I+  LKE     +  GY+PD  F LH V EE K+  LL+HS
Sbjct: 932  KNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHS 991

Query: 505  EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
            EKLA+ FG++  P G+PI++ KNLR+CGDCH   K++S +  R+II+RD  RFHHF+DG+
Sbjct: 992  EKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGS 1051

Query: 565  CSCGDYW 571
            CSCGDYW
Sbjct: 1052 CSCGDYW 1058



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 201/422 (47%), Gaps = 103/422 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K   +WNSV+ G+     ++ +A+ELFD++P+ + VS+ +M+S   ++  D   A+D
Sbjct: 290 MPEKNVASWNSVVTGYCHCY-RMSEARELFDQMPERNSVSWMVMISG-YVHISDYWEAWD 347

Query: 61  FFQRL--------------------------------PIK-------DTASWNTMISGFV 81
            F ++                                PI        D    + +++ + 
Sbjct: 348 VFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYT 407

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---------- 131
           +  ++  A   F  MPE+N  SW+ MI+ + +CG+LD A++L++  P ++          
Sbjct: 408 RNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTA 467

Query: 132 ---------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
                                VVAW A+I+GY + G +  A+ LF +MP KN  +W AMI
Sbjct: 468 YAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMI 527

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           AG+V+N  + + L+LL  +   G  P+ SS +S L  C+++  +++G+ +H L  K+   
Sbjct: 528 AGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQ 587

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG----------------- 273
            ++  +  LISMY KCG++ED   +F  I+ KD V+WN++ISG                 
Sbjct: 588 FNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKM 647

Query: 274 --------------YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
                         Y Q G GE AL LF  M   G+KP+ +T  +LL AC + G + LG 
Sbjct: 648 PKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGE 707

Query: 320 QY 321
           Q+
Sbjct: 708 QF 709



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 187/346 (54%), Gaps = 14/346 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTMIS 78
           G++++A+ +F+++ Q DVVS+N M++    N   D+    FD F     K+  +W  +++
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG---KNIRTWTILLT 241

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           G+ ++  + +AR++F +M E+N VSW+AMISGY++ G L  A +LF   P K+V +W ++
Sbjct: 242 GYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSV 301

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++GY    ++  A +LFD+MP +N V+W  MI+GYV  S   +   +   M     RP+ 
Sbjct: 302 VTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQ 361

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S    VL   + L  L+L   +  +  K+    D    + +++ Y + G L+ A   F  
Sbjct: 362 SIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFET 421

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  ++  +W  MI+ +AQ G+ + A++L++++ ++ +     T  A++ A    G +   
Sbjct: 422 MPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKA 477

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              FD ++N   +A     +  ++    + G L EA DL +KMP K
Sbjct: 478 RLIFDEILNPNVVA-----WNAIIAGYTQNGMLKEAKDLFQKMPVK 518



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 83/326 (25%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT I    +   + +AR +F  M +++ VSW++MI+GY + G++D+A  LF     K++ 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR 234

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            WT +++GY K G+++ A ++F+ M  +N+V+WNAMI+GYV+N   ++  KL   M    
Sbjct: 235 TWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM---- 290

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
              N +S +SV+ G                                   YC C  + +A 
Sbjct: 291 PEKNVASWNSVVTG-----------------------------------YCHCYRMSEAR 315

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV---------- 303
           +LF ++  ++ V+W  MISGY       +A  +F KM     +PD   FV          
Sbjct: 316 ELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLD 375

Query: 304 -------------------------ALLLACNHAGLVDLGIQYFDSM--VNDYGIAAKPD 336
                                    A+L A    G +DL + +F++M   N+Y       
Sbjct: 376 DLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS------ 429

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMP 362
            +T M+    + G+L +A+ L +++P
Sbjct: 430 -WTTMIAAFAQCGRLDDAIQLYERVP 454



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 157/346 (45%), Gaps = 48/346 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK TV+WNS+++G ++    L DA+ +F+K+P+ DVV                     
Sbjct: 616 IRVKDTVSWNSLISGLSENY-MLDDARVVFEKMPKRDVV--------------------- 653

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS-----GY 111
                      SW  +IS +VQ  +   A DLFL M  +    N ++ ++++S     G 
Sbjct: 654 -----------SWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGA 702

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           I+ G+   A+ +FK+     +    ++I+ Y K G  D    +F+EMP  +L+TWNA++ 
Sbjct: 703 IKLGEQFHAL-IFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLV 760

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLC 230
           G  +N   ++ +K+   M   GI P+  S   VL  CSH   +  G    + +  K  + 
Sbjct: 761 GCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIM 820

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDK 289
                 T ++ +  + G L +A  L   +  K D V W A++     H   E   R+ ++
Sbjct: 821 PLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAER 880

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           +  +  KP S T+V L       G+ D  +     ++ D G+  +P
Sbjct: 881 LF-QMTKPKSATYVLLSNLFASQGMWD-KVAEIRKLMKDQGLTKEP 924


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/585 (41%), Positives = 363/585 (62%), Gaps = 19/585 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  ++W +++AG+ +  G+L  A++  D + +  VV++N M+S   ++    + A +
Sbjct: 220 MTERDELSWTTMIAGYVRN-GELDAARQFLDGMTEKLVVAWNAMISG-YVHHGFFLEALE 277

Query: 61  FFQRLPIK----DTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWS-----A 106
            F+++ +     D  ++ +++S     GF        A    L    + S+ +S     A
Sbjct: 278 MFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHA--YILRTEPRPSLDFSLSVNNA 335

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           + + Y +CG++D+A ++F   PVK +V+W A++SGY+  G++D A+  F+EMP +NL+TW
Sbjct: 336 LATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTW 395

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
             MI+G  +N + E+ LKL   M   G  P   + +  ++ C+ L++L  G+Q+H  + +
Sbjct: 396 TVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVR 455

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                  +A   LI+MY KCG +E A  LFL +   D V+WNAMI+   QHG G +AL L
Sbjct: 456 LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALEL 515

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F+ M  E + PD ITF+ +L  C+HAGLV+ G +YF SM   YGI    DHY  M+DLL 
Sbjct: 516 FELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLC 575

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAGK  EA D+I+ MP +P P I+  LL+ CR+H  +DL   AA  LF L P +  G YV
Sbjct: 576 RAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQH-DGTYV 634

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+N+YA + +WDDVA++R  M++  V K PG SWIEV   VH F   D VHPE+ +++ 
Sbjct: 635 LLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYN 694

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            L+EL  +M+  GY+PD +F LH +  E KE +L  HSEKLA+ FGL+K+PLG  +RVFK
Sbjct: 695 YLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFK 754

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR+CGDCH A K++S + +REI+VRD  RFHHFK+G CSCG+YW
Sbjct: 755 NLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 221/511 (43%), Gaps = 139/511 (27%)

Query: 2   NVKTTVNWNSVLAGFAKQRG--------------KLKDAQELFDKIPQPDVVSYNIMLSC 47
           ++  TV+ + + +GF K RG               L  A  LFD+I QPD+V+   +++ 
Sbjct: 32  SIARTVHAHMIASGF-KPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAA 90

Query: 48  ILLNSDDVVAAFDFFQR-LPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKN 100
                +  +A   FF   L I+DT  +N MI+G+    +   A +LF  +      P+  
Sbjct: 91  HSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNF 150

Query: 101 SVS----------------------------------WSAMISGYIECG---------QL 117
           + +                                   +A++S +++C           +
Sbjct: 151 TFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLM 210

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
             A +LF     +  ++WT MI+GY++ G++D A +  D M  K +V WNAMI+GYV + 
Sbjct: 211 AAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHG 270

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDT 233
           +  + L++ R M  LGI+ +  + +SVL  C++      GKQVH  + ++     L    
Sbjct: 271 FFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSL 330

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY------------------- 274
           +    L ++Y KCG +++A ++F ++  KD+V+WNA++SGY                   
Sbjct: 331 SVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPER 390

Query: 275 ------------AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------H 311
                       AQ+G GE++L+LF++MK EG +P    F   ++AC            H
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLH 450

Query: 312 AGLVDLGIQYFDS-------MVNDYGIAAKPDHYTC---------------MVDLLGRAG 349
           A LV LG   FDS       ++  Y      +   C               M+  LG+ G
Sbjct: 451 AQLVRLG---FDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHG 507

Query: 350 KLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
              +A++L + M      P    F T+LS C
Sbjct: 508 HGAQALELFELMLKEDILPDRITFLTVLSTC 538



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 33/129 (25%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----------- 261
           S  + + VH  +  S        L  LI +YCK  DL  A  LF EI++           
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIA 89

Query: 262 ----------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
                                 +D V +NAMI+GY+ +  G  A+ LF  +   G +PD+
Sbjct: 90  AHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDN 149

Query: 300 ITFVALLLA 308
            TF ++L A
Sbjct: 150 FTFTSVLGA 158


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/642 (39%), Positives = 375/642 (58%), Gaps = 85/642 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N++L+ +AK  G L DA+ +FD I   ++VS+  M+   +  + ++  A+  ++ + +  
Sbjct: 135 NTLLSMYAKC-GSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL-EAYKCYETMKLAG 192

Query: 69  ---DTASWNTMISGFV--------QKKNM---------------------------AKAR 90
              D  ++ ++++ F         QK +M                           +KA+
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVAWTAMISG--- 141
            +F  +PEKN V+W+ +I+GY + GQ+D A+EL +      VAP K  + +T+++ G   
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNK--ITYTSILQGCTT 310

Query: 142 --------------------------------YMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                                           Y K G +  A KLF ++P +++VTW AM
Sbjct: 311 PLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAM 370

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           + GY +  + ++ + L R M   GI+P+  + +S L  CS  + LQ GK +HQ +  +  
Sbjct: 371 VTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGY 430

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D    + L+SMY KCG ++DA  +F ++  ++VV W AMI+G AQHG+  +AL  F++
Sbjct: 431 SLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQ 490

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           MK +G+KPD +TF ++L AC H GLV+ G ++F SM  DYGI    +HY+C VDLLGRAG
Sbjct: 491 MKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 550

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA ++I  MPF+P P+++G LLSACR+H  ++  E AA N+  L+P +  G YV L+
Sbjct: 551 HLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDP-DDDGAYVALS 609

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYAA  +++D  ++R  M++ +VVK PG SWIEV   VH F   D+ HPE   I+ +L 
Sbjct: 610 NIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELG 669

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L +++K  GYVPD  F LH V EE K Q L  HSE+LAI +GL+K P GTPIR+ KNLR
Sbjct: 670 KLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLR 729

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A+K+IS +  REII RD  RFHHF DG CSCGD+W
Sbjct: 730 VCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 151/333 (45%), Gaps = 55/333 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--AFDF 61
           K  V W  ++AG+A+Q G++  A EL +K+ Q +V    I  + IL      +A      
Sbjct: 261 KNVVTWTLLIAGYAQQ-GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKK 319

Query: 62  FQRLPIKDTAS---W--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
             R  I+       W  N +I+ + +   + +AR LF  +P ++ V+W+AM++GY + G 
Sbjct: 320 VHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGF 379

Query: 117 LDKAVELFK------VAPVK---------------------------------SVVAWTA 137
            D+A++LF+      + P K                                  V   +A
Sbjct: 380 HDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSA 439

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S Y K G +D A  +F++M  +N+V W AMI G  ++    + L+    M   GI+P+
Sbjct: 440 LVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPD 499

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCKCGDLEDAC 253
             + +SVL  C+H+  ++ G++  + ++      P+ +  +    L+    + G LE+A 
Sbjct: 500 KVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLG---RAGHLEEAE 556

Query: 254 KLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALR 285
            + L +  +     W A++S    H   E+  R
Sbjct: 557 NVILTMPFQPGPSVWGALLSACRIHSDVERGER 589



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 1/185 (0%)

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           ++ L +L  MI  G R  +     +L  C+ L SL+ G++VH  + KS +  +      L
Sbjct: 78  KEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 137

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +SMY KCG L DA ++F  I+ +++V+W AMI  +    +  +A + ++ MK  G KPD 
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TFV+LL A  +  L+ +G Q     +   G+  +P   T +V +  + G + +A  +  
Sbjct: 198 VTFVSLLNAFTNPELLQVG-QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD 256

Query: 360 KMPFK 364
           K+P K
Sbjct: 257 KLPEK 261


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/600 (39%), Positives = 364/600 (60%), Gaps = 39/600 (6%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           +W ++L+ FA   G  ++A+ LFD + + D++++ IML+ +   S+   A + F Q +P 
Sbjct: 56  SWTALLSAFALS-GHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQ-MPE 113

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D  +W  M++   ++  M  AR+ F  MPE+N  SW++++S Y   G +  A  +F   
Sbjct: 114 RDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM 173

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY-------------- 173
           P  ++VAWTAM++GY   G V  A++ FD MP ++L+ W AM++ Y              
Sbjct: 174 PEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQ 233

Query: 174 -----------------VENSWAEDGLKLLRMM-----IGLGIRPNASSLSSVLLGCSHL 211
                            VEN   E+  +L   M     +  G+ PN  +  ++L  CS L
Sbjct: 234 RMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFL 293

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
            +L  G+++H  V +     D      L++ Y +CG L DA  +F  ++R+DV++W++MI
Sbjct: 294 GALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMI 353

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           S +AQ G+ ++A+ L+ +M  EG  PD I F+++L AC+++G+V+    +F S+V D  +
Sbjct: 354 SAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQV 413

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
               +HY CMVD+LGRAGKL +A DL++ MPF P P ++ T+LSAC+++  ++  E AA 
Sbjct: 414 EPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAE 473

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            +F L+P N++  Y+ LANIY+A K+  D ARIR  M+E  + K PG SWIEV   VHEF
Sbjct: 474 VVFELDPENSSP-YITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEF 532

Query: 452 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 511
            +GD++HP+   I+ +++ L ++MK AGY  D +  L  V E+ KE LL +HSEKLAIAF
Sbjct: 533 IAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAF 592

Query: 512 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GLI  P G P+R+ KNLRVC DCH ATK IS +  REI+VRDT RFHHF++G CSC DYW
Sbjct: 593 GLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 189/395 (47%), Gaps = 47/395 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G ++ A+++FD I   D  S+ IMLS I   S D+  A   F R+P     SW  ++S F
Sbjct: 6   GCVERARQIFDAIADRDSFSWGIMLS-IYARSGDLSNAKGVFDRMPRWSLGSWTALLSAF 64

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
               +  +A+ LF  M E++ ++W+ M++       ++ A   F   P + +VAWTAM++
Sbjct: 65  ALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLA 124

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
              + G+++ A + FD+MP +NL +W ++++ Y  +   +   ++   M       N  +
Sbjct: 125 ANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEW----NLVA 180

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            +++L G S    +   K+     F S   +D  A T ++S Y   G L    ++F  + 
Sbjct: 181 WTAMLTGYSLSGDVVRAKR----AFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMP 236

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-----DEGMKPDSITFVALLLACN----- 310
            +D+++W  M++   ++   E++  LFD+M       +GM P+ +TF+ LL AC+     
Sbjct: 237 ERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGAL 296

Query: 311 ------HAGLVDLGIQ----YFDSMVNDYG-IAAKPD--------------HYTCMVDLL 345
                 HA + + G        +++VN YG   A  D               ++ M+   
Sbjct: 297 AEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAF 356

Query: 346 GRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 377
            + G++ EA++L  +M  +   P   IF ++L AC
Sbjct: 357 AQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFAC 391



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           + + G V+ A ++FD +  ++  +W  M++ Y  +    +   +   M    +    + L
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           S+  L   H        +  + +F +   +D  A T ++++     ++EDA   F ++  
Sbjct: 62  SAFALSGHH--------EEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPE 113

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +D+V W AM++  A+ G+ E A   FD+M +  +     ++ +LL A   +G V    + 
Sbjct: 114 RDLVAWTAMLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDVKAAGRV 169

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           FDSM  ++ + A    +T M+     +G +V A      MP
Sbjct: 170 FDSM-PEWNLVA----WTAMLTGYSLSGDVVRAKRAFDSMP 205


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/618 (41%), Positives = 355/618 (57%), Gaps = 50/618 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-------------------------- 34
           M  +  V+WN+++AG++ Q G+  +A  LF ++                           
Sbjct: 181 MPKRDVVSWNAIIAGYS-QNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ 239

Query: 35  -------------QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
                        + DV+  N +++ +     +V  A   F+R+PI+D ASWN +I G+ 
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVN-MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----V 133
                 +A   F  M  +    NS++  +++        L++  ++   A         V
Sbjct: 299 LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV 358

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              A+++ Y K G V+ A KLF+ MP KN+V WNA+I+GY ++    + L L   M   G
Sbjct: 359 VGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG 418

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+P++ ++ SVL  C+H  +L+ GKQ+H    +S    +    T L+ +Y KCG++  A 
Sbjct: 419 IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQ 478

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           KLF  +  +DVV+W  MI  Y  HG GE AL LF KM++ G K D I F A+L AC+HAG
Sbjct: 479 KLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAG 538

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G+QYF  M +DYG+A K +HY C+VDLLGRAG L EA  +IK M  +P   ++G L
Sbjct: 539 LVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGAL 598

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACR+H  ++L E AA +LF L+P N AG YV L+NIYA  ++W+DVA++R  MKE  V
Sbjct: 599 LGACRIHCNIELGEQAAKHLFELDPDN-AGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGV 657

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG S + V   V  F  GDR HP+   I+  L+ L ++M+ AGYVP+   AL  V E
Sbjct: 658 KKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEE 717

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE +L  HSEKLAI+FG+I    G PIR+ KNLRVC DCH ATK+IS I  REIIVRD
Sbjct: 718 EAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRD 777

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHH K+G CSCGDYW
Sbjct: 778 ANRFHHVKNGFCSCGDYW 795



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 170/313 (54%), Gaps = 12/313 (3%)

Query: 62  FQRLPIKDTAS-WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI--SGYIECG--- 115
           F +  I++ A  W   I G+V+     KA  L+  M ++  ++   ++  S    CG   
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQM-QRTGINPDKLVFLSVIKACGSQS 134

Query: 116 --QLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
             Q  + V  ++        V+  TA+ S Y K G ++ A ++FD MP +++V+WNA+IA
Sbjct: 135 DLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +N    + L L   M   GI+PN+S+L SV+  C+HL +L+ GKQ+H    +S +  
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D   +  L++MY KCG++  A KLF  +  +DV +WNA+I GY+ + +  +AL  F++M+
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G+KP+SIT V++L AC H   ++ G Q     +   G  +       +V++  + G +
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNV 373

Query: 352 VEAVDLIKKMPFK 364
             A  L ++MP K
Sbjct: 374 NSAYKLFERMPKK 386


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/626 (38%), Positives = 351/626 (56%), Gaps = 75/626 (11%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------------------------- 53
           Q+ +LK+A +   +IPQP    Y+ +++  L +                           
Sbjct: 44  QQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNR 103

Query: 54  ---------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
                     +V A   F  +P KD  SWNTMISG+     + +AR LF  MP +++ SW
Sbjct: 104 LIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSW 163

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSV-------------------------------- 132
           +A+ISGY+  G   +A++LF++                                      
Sbjct: 164 NAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLI 223

Query: 133 --------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                   V WTA++  Y K G ++ A  +FD+M  K++V+W  MI    E+   ++G  
Sbjct: 224 RSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFS 283

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L R ++G G+RPN  + + VL  C+ L++ Q+GK+VH  + +      + A + L+ +Y 
Sbjct: 284 LFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYS 343

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG+ E A ++F ++ R D+V+W ++I GYAQ+G+ + AL+ F+ +   G KPD ITFV 
Sbjct: 344 KCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVG 403

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC HAGLVD+G++YF S+   +G+    DHY C++DLL R+G+  EA ++I  MP K
Sbjct: 404 VLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMK 463

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P   ++ +LL  CR+H  ++LAE AA  LF L P N A  Y+ L+NIYA    W +  ++
Sbjct: 464 PDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPA-TYITLSNIYANAGLWTEETKV 522

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R  M    +VK PG SWIE+   VH F  GD  HP++  IHE L EL K+MK  GYV D 
Sbjct: 523 RNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADT 582

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
            F LH V EE KEQ + +HSEKLA+AFG+I    GTPI+VFKNLR C DCH A KYIS I
Sbjct: 583 NFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKI 642

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDY 570
            +R+IIVRD+ RFH F DG+CSC DY
Sbjct: 643 VQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           +++L  +  +L EAVD + ++P +P P ++ TL++AC  H++L+L +
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIP-QPSPRLYSTLIAACLRHRKLELGK 83


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/569 (43%), Positives = 354/569 (62%), Gaps = 10/569 (1%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G +  A ++FD++ + +VV YN M++  LL S  V  +   F  +  +D+
Sbjct: 177 SSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITG-LLRSGMVKDSKRLFHGMKERDS 235

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVE------- 122
            SW TMI+G +Q    A+A DLF  M ++  ++      S    CG L    E       
Sbjct: 236 ISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTL 295

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           + +     +V   +A++  Y K   V  AE +F  M  KN+V+W AM+ GY +N ++E+ 
Sbjct: 296 IIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEA 355

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           +++   M   GI P+  +L SV+  C++L+SL+ G Q H     S L    T    LI++
Sbjct: 356 VRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITL 415

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG +ED+ +LF E+  +D V+W A++SGYAQ GK  + + LF++M  +G+KPD++TF
Sbjct: 416 YGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTF 475

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +A+L AC+ AGLV+ G QYF+SM+ D+GI    DHYTCM+DL GRAG+L EA + I KMP
Sbjct: 476 IAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMP 535

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F P    + TLLS+CR++   ++ ++AA +L  L+P N AG Y+ L++IYAA  KW +VA
Sbjct: 536 FSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAG-YILLSSIYAAKGKWSNVA 594

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           ++R  M+E    K PG+SWI+  + V+ F + D+  P    I+ +L++L  +M   GYVP
Sbjct: 595 QLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVP 654

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D    LH V +  K ++L  HSEKLAIAFGL+ +P G PIRV KNLRVCGDCH ATKYIS
Sbjct: 655 DASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYIS 714

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I +REI+VRD  RFH FKDGTCSCGD+W
Sbjct: 715 KISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 209/445 (46%), Gaps = 75/445 (16%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T  +N+++  ++K  G +  A+ +FDK+PQP+  S+N MLS     S D+    + F  +
Sbjct: 40  TFLYNNLINAYSK-LGNITYARHVFDKMPQPNSFSWNTMLSA-YSKSGDLSTMQEIFSIM 97

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAM------------- 107
           P +D  SWN++ISG+V   ++ +A   + +M +      N +++S M             
Sbjct: 98  PNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLG 157

Query: 108 ----------------------ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                                 +  Y + G +  A ++F     ++VV +  MI+G ++ 
Sbjct: 158 RQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRS 217

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G V  +++LF  M  ++ ++W  MI G ++N    + + L R M   G+  +  +  SVL
Sbjct: 218 GMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVL 277

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C  L +L+ GK++H L+ +S    +    + L+ MYCKC  +  A  +F  +  K+VV
Sbjct: 278 TACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVV 337

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF--- 322
           +W AM+ GY Q+G  E+A+R+F  M+  G++PD  T  +++ +C +   ++ G Q+    
Sbjct: 338 SWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQA 397

Query: 323 ------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAV 355
                       ++++  YG     +                +T +V    + GK  E +
Sbjct: 398 LVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETI 457

Query: 356 DLIKKM---PFKPQPAIFGTLLSAC 377
           DL ++M     KP    F  +LSAC
Sbjct: 458 DLFERMLVQGLKPDAVTFIAVLSAC 482



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 127/246 (51%), Gaps = 9/246 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T  +N +I+ + +  N+  AR +F  MP+ NS SW+ M+S Y + G L    E+F + P
Sbjct: 39  ETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMP 98

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NLVTWNAMIAGYVENSWAEDGL 183
            +  V+W ++ISGY+ +G V  A K ++ M        N +T++ M+         + G 
Sbjct: 99  NRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGR 158

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           ++   ++  G        SS++   + +  + +  QV   V +  +    T +T L+   
Sbjct: 159 QIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLL--- 215

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            + G ++D+ +LF  ++ +D ++W  MI+G  Q+G   +A+ LF  M+ EGM  D  TF 
Sbjct: 216 -RSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFG 274

Query: 304 ALLLAC 309
           ++L AC
Sbjct: 275 SVLTAC 280



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 33/174 (18%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C    +    K++H L+ KS    +T     LI+ Y K G++  A  +F ++ + +  +W
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 268 NAMI-------------------------------SGYAQHGKGEKALRLFDK-MKDEGM 295
           N M+                               SGY  +G   +A++ ++  MKD  +
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
             + ITF  +LL  +  G VDLG Q    +V  +G  A     + +VD+  + G
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVK-FGFGAYVFVGSSLVDMYAKMG 187


>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/325 (69%), Positives = 265/325 (81%), Gaps = 1/325 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +KTTV WNS+LAG++++RGK+K+A+ELFDKIP+PD +SYN ML+C + NSD +  A  
Sbjct: 113 MTIKTTVTWNSILAGYSRKRGKMKNARELFDKIPEPDTISYNTMLACYVHNSD-MEKAQA 171

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF  +P KD ASWNT+ISGF Q   MAKA  LFL MP KN V+W+AMISGYI CG L  A
Sbjct: 172 FFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVVTWNAMISGYIACGDLTSA 231

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LFK  PVK+VVA TAMI+GYMK G + LAEKLF EM T N+VTWNAMI+G++ENS AE
Sbjct: 232 WKLFKTMPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRAE 291

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           DG+KL R M+G GIRPN S+LSS+LLGCS LS+LQLG+QVHQLV KSPL  D TA T L+
Sbjct: 292 DGVKLFRTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLV 351

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           SMYCKCGDLEDA KLFLE+ RKDVVTWNAMISGYA HG GEKALRLFD+MK EG+ PD I
Sbjct: 352 SMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMKKEGITPDWI 411

Query: 301 TFVALLLACNHAGLVDLGIQYFDSM 325
           TFVA+LLACNHAG  DLG++YF SM
Sbjct: 412 TFVAVLLACNHAGFADLGLKYFHSM 436



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 168/335 (50%), Gaps = 12/335 (3%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWNTMISGFVQKKNMAKAR 90
           +  PD +S+N          D+++     F      + D    N +I+ F++  ++  A 
Sbjct: 48  LQNPDPISFNDSNKPPNNTHDNILNKSSPFHHHNNKVNDVILSNQVITSFIRSGDLDSAL 107

Query: 91  DLFLAMPEKNSVSWSAMISGYI-ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
           +LF  M  K +V+W+++++GY  + G++  A ELF   P    +++  M++ Y+    ++
Sbjct: 108 ELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELFDKIPEPDTISYNTMLACYVHNSDME 167

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A+  FD +P K+  +WN +I+G+ +N       KL   M    +    +++ S  + C 
Sbjct: 168 KAQAFFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVV-TWNAMISGYIACG 226

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L+S          +FK+   K+  A T +I+ Y K G ++ A KLF E+   +VVTWNA
Sbjct: 227 DLTSA-------WKLFKTMPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTWNA 279

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           MISG+ ++ + E  ++LF  M   G++P+  T  +LLL C+    + LG Q    +V   
Sbjct: 280 MISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQ-VHQLVCKS 338

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            +A+     T +V +  + G L +A  L  ++P K
Sbjct: 339 PLASDMTAGTSLVSMYCKCGDLEDAWKLFLELPRK 373



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 148/358 (41%), Gaps = 35/358 (9%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V  V+    +I+ +++ G +D A +LF+ M  K  VTWN+++AGY   S     +K  R 
Sbjct: 84  VNDVILSNQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGY---SRKRGKMKNARE 140

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           +      P+  S +++L    H S ++  +    L+      KD  +   LIS + + G 
Sbjct: 141 LFDKIPEPDTISYNTMLACYVHNSDMEKAQAFFDLIPN----KDPASWNTLISGFSQNGK 196

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +  A KLFL++  K+VVTWNAMISGY   G    A +LF  M  + +    +   A++  
Sbjct: 197 MAKAHKLFLQMPYKNVVTWNAMISGYIACGDLTSAWKLFKTMPVKNV----VACTAMITG 252

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKP 365
               G + L  + F  M  D  +      +  M+       +  + V L + M     +P
Sbjct: 253 YMKLGFIKLAEKLFKEMSTDNVVT-----WNAMISGFIENSRAEDGVKLFRTMVGFGIRP 307

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
            P+   +LL  C     L L       +     A+       L ++Y      +D  ++ 
Sbjct: 308 NPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLVSMYCKCGDLEDAWKLF 367

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           L +   +VV     +W       +   SG  +H       EK   L   MK  G  PD
Sbjct: 368 LELPRKDVV-----TW-------NAMISGYALH----GAGEKALRLFDEMKKEGITPD 409


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/627 (39%), Positives = 359/627 (57%), Gaps = 75/627 (11%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIML-SCI-------------------------LLNS 52
           Q+ +LK+A ++  +I +P    Y+ ++ SCI                         +LN 
Sbjct: 51  QQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNR 110

Query: 53  --------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
                   D ++ +   F  +P +D  SWN +ISG+ +   + +A+ LF  MPE+++ SW
Sbjct: 111 LLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSW 170

Query: 105 SAMISGYIECGQLDKAVELFKV-----------------------APVKSV--------- 132
           +AMISGY+   + ++A+ELF++                        P   +         
Sbjct: 171 TAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIM 230

Query: 133 --------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                   V W+A+   Y K G ++ A  +FD+M  +++VTW AMI  Y ++   ++G  
Sbjct: 231 RTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFD 290

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L   ++  GIRPN  + S VL  C++ +S +LGK+VH  + +      + A + L+ MY 
Sbjct: 291 LFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYS 350

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG++  A ++F E  + D+ +W ++I+GYAQ+G+ ++A+R F+ +   G +PD ITFV 
Sbjct: 351 KCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVG 410

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC HAGLVD G+ YF S+   YG+    DHY C++DLL R+G+  EA ++I KM  K
Sbjct: 411 VLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMK 470

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P   ++ +LL  CR+H  L LA+ AA  LF + P N A  YV LANIYA    W +VA+I
Sbjct: 471 PDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPA-TYVTLANIYATAGMWSEVAKI 529

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R +M +  VVK PG SWI +   VH F  GD  HP+   I+E L +L KRMK  G+VPD 
Sbjct: 530 RKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDT 589

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
            F LH V +E KEQ L +HSEKLA+AFG+I  P GTPI+VFKNLR C DCH A K+IS I
Sbjct: 590 NFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKI 649

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
             R+IIVRD+ RFH F+DG CSC DYW
Sbjct: 650 TNRKIIVRDSNRFHFFEDGHCSCRDYW 676


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/550 (45%), Positives = 337/550 (61%), Gaps = 41/550 (7%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F +  ++D  S+  +I+G+  +  +  AR LF  +P +++VSW+AMI+GY + G+ ++A+
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 122 ELFK------VAPVKS--------------------VVAW-------------TAMISGY 142
             F+      VAP +S                    V +W              A+I  Y
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G +D A  LF+ +  K++++WN MI GY   +  ++ L L R M    + PN  +  
Sbjct: 310 SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFV 369

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQR 261
           S+L  C++L +L LGK +H  + K  L    T+L T LI MY KCG++E A ++F  ++ 
Sbjct: 370 SILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKP 429

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           K + +WNAMISG A HG    AL LF +M+DEG +PD ITFV +L AC+HAGLV+LG Q 
Sbjct: 430 KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQC 489

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           F SMV DY I+ K  HY CM+DLLGRAG   EA  L+K M  KP  AI+G+LL ACRVH 
Sbjct: 490 FSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            ++L EFAA +LF L P N  G YV L+NIYA   +WDDVARIR  + +  + K+PG S 
Sbjct: 550 NVELGEFAAKHLFELEPENP-GAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSS 608

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 501
           IEV +VVHEF  GD+VH +   I++ L E+++ ++ AG+VPD    L+ + EE KE  L 
Sbjct: 609 IEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLS 668

Query: 502 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
            HSEKLAIAFGLI     T IR+ KNLRVCG+CH A K IS I  REII RD  RFHHFK
Sbjct: 669 HHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728

Query: 562 DGTCSCGDYW 571
           DG+CSC DYW
Sbjct: 729 DGSCSCMDYW 738



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 196/376 (52%), Gaps = 14/376 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTM 76
           G L  A  LF+ I QP+   +N M+    L+S  V  A DF+ R+ +     ++ ++  +
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPV-GAIDFYVRMLLCGVEPNSYTFPFL 138

Query: 77  IS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +      G  Q+        L L + E +    +++I+ Y + G+L  A  +F  + ++ 
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGL-ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            V++TA+I+GY   G +D A +LF+E+P ++ V+WNAMIAGY ++   E+ L   + M  
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + PN S++ +VL  C+   SL+LG  V   +    L  +   +  LI MY KCGDL+ 
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  LF  I  KD+++WN MI GY+     ++AL LF KM+   ++P+ +TFV++L AC +
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP-AIF 370
            G +DLG      +   +        +T ++D+  + G +  A  +   M  KP+    +
Sbjct: 378 LGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM--KPKSLGSW 435

Query: 371 GTLLSACRVHKRLDLA 386
             ++S   +H   ++A
Sbjct: 436 NAMISGLAMHGHANMA 451



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 32/246 (13%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           FG +  A  LF+ +   N   WN MI G   +S     +     M+  G+ PN+ +   +
Sbjct: 79  FGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFL 138

Query: 205 LLGCSHLSSLQLGKQVH-------------------------------QLVFKSPLCKDT 233
           L  C+ + + Q GKQ+H                               +LVF     +D 
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            + T LI+ Y   G L+DA +LF EI  +D V+WNAMI+GYAQ G+ E+AL  F +MK  
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + P+  T V +L AC  +G ++LG  +  S + D+G+ +       ++D+  + G L +
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 354 AVDLIK 359
           A DL +
Sbjct: 318 ARDLFE 323



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 156/363 (42%), Gaps = 81/363 (22%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVV-SYNIMLSCILLNSDDVVAAFDF 61
           V+  V+WN+++AG+A Q G+ ++A   F ++ + +V  + + M++ +   +         
Sbjct: 226 VRDAVSWNAMIAGYA-QSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284

Query: 62  FQRLPIKDTASW------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           + R  I+D          N +I  + +  ++ KARDLF  + EK+ +SW+ MI GY    
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMN 344

Query: 116 QLDKAVELFK------VAP----------------------------------VKSVVAW 135
              +A+ LF+      V P                                  + +   W
Sbjct: 345 SYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T++I  Y K G ++ A+++F  M  K+L +WNAMI+G   +  A   L+L R M   G  
Sbjct: 405 TSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFE 464

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   VL  CSH   ++LG+Q       S + +D   ++P +  Y    DL     L
Sbjct: 465 PDDITFVGVLSACSHAGLVELGRQCF-----SSMVEDYD-ISPKLQHYGCMIDLLGRAGL 518

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E +                      AL     MK+  MKPD   + +LL AC   G V
Sbjct: 519 FDEAE----------------------AL-----MKNMEMKPDGAIWGSLLGACRVHGNV 551

Query: 316 DLG 318
           +LG
Sbjct: 552 ELG 554


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/565 (42%), Positives = 347/565 (61%), Gaps = 22/565 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L  A  LF  +P+ +++S NI+++     S D V A   F  +P ++ A+WN M++G 
Sbjct: 101 GQLDTAITLFGVMPRKNIMSCNILING-YFRSGDWVTARKMFDEMPERNVATWNAMVAGL 159

Query: 81  VQKKNMAKARDLFLAMPE--------------KNSVSWSAMISGYIECGQLDKAVELFKV 126
           +Q +   +   LF  M E              +      A+++G    G + K    F +
Sbjct: 160 IQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNL 219

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
             V S+         YMK G +   E+L   MP++N+V WN +IAG  +N + E+ L   
Sbjct: 220 VVVSSLAHM------YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQY 273

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
            MM   G RP+  +  SV+  CS L++L  G+Q+H  V K+      + ++ LISMY +C
Sbjct: 274 NMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRC 333

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G LE + K+FLE +  DVV W++MI+ Y  HG+G +A+ LF++M+ E ++ + +TF++LL
Sbjct: 334 GCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLL 393

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GL + GI++FD MV  YG+  + +HYTCMVDLLGR G + EA  LI+ MP K  
Sbjct: 394 YACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKAD 453

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              + TLLSAC++HK+ ++A   +  +F L+P +    YV L+NI+A+ K+WDDV+ +R 
Sbjct: 454 VITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVP-YVLLSNIHASDKRWDDVSDVRK 512

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           +M++  + K PG SW+EV   +H+F  GD+ HP+ V I   L+EL   MK  GYVPD++ 
Sbjct: 513 AMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDS 572

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH +  E KE  L+ HSEKLAIAF L+  P+GTPIRV KNLRVC DCH A KYIS I  
Sbjct: 573 VLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISN 632

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REIIVRD++RFHHFK+G CSCGDYW
Sbjct: 633 REIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 33/304 (10%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +++ Y +CGQLD A+ LF V P K++++   +I+GY + G    A K+FDEMP +N+ TW
Sbjct: 93  LLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATW 152

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NAM+AG ++  + E+GL L   M  LG  P+  +L SVL GC+ L +L  G+QVH  V K
Sbjct: 153 NAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRK 212

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                +   ++ L  MY KCG L +  +L   +  ++VV WN +I+G AQ+G  E+ L  
Sbjct: 213 CGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQ 272

Query: 287 FDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDYGI 331
           ++ MK  G +PD ITFV+++ +C+           HA ++  G    +    S+++ Y  
Sbjct: 273 YNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSR 332

Query: 332 AAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTL 373
               ++               ++ M+   G  G+ VEA+DL  +M     +     F +L
Sbjct: 333 CGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSL 392

Query: 374 LSAC 377
           L AC
Sbjct: 393 LYAC 396



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 34/196 (17%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC----- 253
           S  S +L  C   +SL LGKQ+H L+  S    D      L+++Y KCG L+ A      
Sbjct: 53  SLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGV 112

Query: 254 --------------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
                                     K+F E+  ++V TWNAM++G  Q    E+ L LF
Sbjct: 113 MPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLF 172

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDL-GIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            +M + G  PD     ++L  C  AGL  L   +     V   G        + +  +  
Sbjct: 173 SRMNELGFLPDEFALGSVLRGC--AGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYM 230

Query: 347 RAGKLVEAVDLIKKMP 362
           + G L E   LI+ MP
Sbjct: 231 KCGSLGEGERLIRAMP 246


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/598 (40%), Positives = 351/598 (58%), Gaps = 51/598 (8%)

Query: 23  LKDAQELFDKIPQPDVV--SYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           +  A+++FD+ P+  +   S+  M++  + N DD+VAA +    L      +WN MISG+
Sbjct: 200 MASARKVFDETPKNQIYEPSWTTMIAGYVRN-DDLVAARELLDGLTYPIDVAWNAMISGY 258

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMIS---------GYIECGQ----------- 116
           V++    +A D F  M     +++  +++++IS         G   CG+           
Sbjct: 259 VRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVV 318

Query: 117 --------------------LDKAVE---LFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
                                D+ +E   +F   PV+ +++W A++SGY+   +++ A  
Sbjct: 319 EPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANS 378

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F EMP +N++TW  MI+G  +N + E+GLKL   M   G+ P   + +  +  CS L S
Sbjct: 379 IFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGS 438

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L  G+Q+H  V +       +A   LI+MY +CG +E A  +FL +   D V+WNAMI+ 
Sbjct: 439 LDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAA 498

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
            AQHG G KA+ LF++M  E + PD ITF+ +L ACNHAGL+  G  YFD+M   YGI  
Sbjct: 499 LAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITP 558

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
             DHY  ++DLL RAG  ++A  +IK MPF+    I+  LL+ CR+H  ++L   AA  L
Sbjct: 559 GEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRL 618

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
             L P    G Y+ L+N+YAA+ +WD+VAR+RL M+E  V K PG SW+EV  +VH F  
Sbjct: 619 LELIPGQ-DGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLV 677

Query: 454 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 513
            D  HPE+ +++  L++L   MK  GYVPD +F LH +  E KE  L  HSEKLA+ +G+
Sbjct: 678 DDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGI 737

Query: 514 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +K+PLG  IRVFKNLR+CGDCH A KYIS + +REI+VRD  RFHHFK+G CSCG+YW
Sbjct: 738 MKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 187/433 (43%), Gaps = 100/433 (23%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQK 83
           A++LFDKIP+PD+V+   +LS    +S +V  A   F   P  I+DT S+N MI+ +   
Sbjct: 59  ARKLFDKIPKPDIVARTTLLSA-YSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHG 117

Query: 84  KNMAKARDLFLAM------PEKNSVS---------------------------------- 103
            +   A +LF+ M      P+  + S                                  
Sbjct: 118 NDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSV 177

Query: 104 WSAMISGYIECGQ---------LDKAVELFKVAPVKSVV--AWTAMISGYMKFGKVDLAE 152
            +A++S Y+ C           +  A ++F   P   +   +WT MI+GY++   +  A 
Sbjct: 178 TNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAAR 237

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-- 210
           +L D +     V WNAMI+GYV     E+     R M  +GI+ +  + +S++  C    
Sbjct: 238 ELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCN 297

Query: 211 --LSSLQLGKQVHQLVFKSPL-----------------------------------CKDT 233
             +     G+QVH  + ++ +                                    +D 
Sbjct: 298 EKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDI 357

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            +   ++S Y     +E+A  +F E+  ++V+TW  MISG AQ+G GE+ L+LF++MK E
Sbjct: 358 ISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSE 417

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV---NDYGIAAKPDHYTCMVDLLGRAGK 350
           G++P    F   + AC+  G +D G Q    ++   +D G++A       ++ +  R G 
Sbjct: 418 GLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAG----NALITMYSRCGV 473

Query: 351 LVEAVDLIKKMPF 363
           +  A  +   MP+
Sbjct: 474 VESAESVFLTMPY 486



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 27/320 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T   N +I+ + +  N+  AR LF  +P+ + V+ + ++S Y   G +  A +LF   P
Sbjct: 39  NTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATP 98

Query: 129 --VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV----TWNAMIAGYVENSWAEDG 182
             ++  V++ AMI+ Y        A  LF +M     +    T++++++     +  E  
Sbjct: 99  LTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERH 158

Query: 183 LKLLRM-MIGLG---IRPNASSLSSVLLGCSH---LSSLQLGKQVHQLVFKSPLCK-DTT 234
            ++L   +I LG   I    ++L S  + C+    + S QL     ++  ++P  +    
Sbjct: 159 CQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEP 218

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
           + T +I+ Y +  DL  A +L   +     V WNAMISGY + G  E+A   F +M   G
Sbjct: 219 SWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG 278

Query: 295 MKPDSITFVALLLACNHA----GLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDL 344
           ++ D  T+ +L+ AC       G+ + G Q    ++       +P H+        ++  
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILR---TVVEPSHHFVLSVNNALITF 335

Query: 345 LGRAGKLVEAVDLIKKMPFK 364
             +  +++EA  +  KMP +
Sbjct: 336 YTKYDRMIEARRVFDKMPVR 355



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 127/306 (41%), Gaps = 55/306 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN+VL+G+   + ++++A  +F ++P+ +V+++ +M+S +  N         
Sbjct: 352 MPVRDIISWNAVLSGYVNAQ-RIEEANSIFSEMPERNVLTWTVMISGLAQNGFG-EEGLK 409

Query: 61  FFQRLPIKDTASWNTMISGFVQK-------KNMAKARDLFLAMPEKNSVS-WSAMISGYI 112
            F ++  +     +   +G +          N  +     + +   + +S  +A+I+ Y 
Sbjct: 410 LFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYS 469

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            CG ++ A  +F   P    V+W AMI+   + G    A +LF++M  ++++        
Sbjct: 470 RCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDIL-------- 521

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
                                  P+  +  ++L  C+H   ++ G+      +   +C  
Sbjct: 522 -----------------------PDRITFLTILTACNHAGLIKEGRH-----YFDTMCT- 552

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISGYAQHGKGEKAL 284
              +TP    Y +  DL     +FL+ Q              W A+++G   HG  E  +
Sbjct: 553 RYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGI 612

Query: 285 RLFDKM 290
           +  D++
Sbjct: 613 QAADRL 618



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 34/134 (25%)

Query: 209 SHLSSLQL-GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR------ 261
           +H+S+ Q+  + VH  +  S    +T  L  LI++YCK  ++  A KLF +I +      
Sbjct: 15  NHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVAR 74

Query: 262 ---------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
                                      +D V++NAMI+ Y+    G  AL LF +MK  G
Sbjct: 75  TTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYG 134

Query: 295 MKPDSITFVALLLA 308
             PD  TF ++L A
Sbjct: 135 FLPDPFTFSSVLSA 148


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/524 (44%), Positives = 331/524 (63%), Gaps = 7/524 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+  A +  + +   D  SWN+++ GFV+     +A  LF  M  +N           + 
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 114 C---GQLD-KAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           C   G ++ K+V   + K       +   A++  Y K G +D A  +F++M  K++++W 
Sbjct: 375 CCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWT 434

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +++ GY +N+  E+ LK+   M   G+ P+   ++S+L  C+ L+ L+ GKQVH    KS
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS 494

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L    +    L++MY KCG L+DA  +F+ +Q KDV+TW A+I GYAQ+GKG  +L+ +
Sbjct: 495 GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFY 554

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           D M   G +PD ITF+ LL AC+HAGLVD G +YF  M   YGI   P+HY CM+DL GR
Sbjct: 555 DAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGR 614

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           +GKL EA  L+ +M  KP   ++ +LLSACRVH+ L+LAE AA NLF L P NA   YV 
Sbjct: 615 SGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMP-YVM 673

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+N+Y+A +KW+DVA+IR  MK   +VK PG SW+E+ + V+ F S DR HP    I+ K
Sbjct: 674 LSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTK 733

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           + E+  R+K AGYVPD+ F+LH + +E KE  L +HSEKLA+AFGL+  P   PIR+FKN
Sbjct: 734 IDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKN 793

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVCGDCH A KYIS +  R II+RD+  FHHF++G CSCGDYW
Sbjct: 794 LRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 196/458 (42%), Gaps = 72/458 (15%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  S  V  A   F ++P KD  SWNTMIS +V    + +AR+LF     K+S++WS++I
Sbjct: 75  LSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSII 134

Query: 109 SGYIECGQLDKAVELFKVAPVK-------------------------------------- 130
           SGY + G   +A +LF+   ++                                      
Sbjct: 135 SGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFE 194

Query: 131 -SVVAWTAMISGYMKFGKVDLAEKLFD--EMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            +V   T ++  Y K   V  AE LF   E   KN V W AM+ GY +N      ++  R
Sbjct: 195 GNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFR 254

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G+  N  +  ++L  CS + +   G+QVH  + KS    +    + L+ MY KCG
Sbjct: 255 YMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCG 314

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           DL++A  +   ++  DVV+WN+++ G+ +HG  E+ALRLF  M    MK D  TF ++L 
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 308 AC---------NHAGLVDLGIQYF----DSMVNDYGIAAKPD---------------HYT 339
            C          H  ++  G + +    +++V+ Y      D                +T
Sbjct: 375 CCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWT 434

Query: 340 CMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            +V    +     E++ +   M      P   I  ++LSAC     L+  +   ++    
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS 494

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
               +   Y  L  +YA     DD   I +SM+  +V+
Sbjct: 495 GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVI 532



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 34/276 (12%)

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE--- 175
           +++     A  +S+     +++   K G+V+ A KLFD+MP K+  +WN MI+ YV    
Sbjct: 52  RSIHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGR 111

Query: 176 -----------------------NSWAEDGLK-----LLRMMIGLGIRPNASSLSSVLLG 207
                                  + + + G K     L R M   G + +  +L SVL  
Sbjct: 112 LVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRV 171

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVV 265
           CS L  +Q G+ +H  V K+    +   +T L+ MY KC  + +A  LF  LE  RK+ V
Sbjct: 172 CSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHV 231

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
            W AM++GYAQ+G G KA+  F  M  +G++ +  TF  +L AC+       G Q    +
Sbjct: 232 LWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFI 291

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           V   G  +     + +VD+  + G L  A ++++ M
Sbjct: 292 VKS-GFGSNVYVQSALVDMYAKCGDLKNAKNMLETM 326



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 147/325 (45%), Gaps = 47/325 (14%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V+WNS++ GF +  G  ++A  LF  +     + D  ++  +L+C ++ S +  +     
Sbjct: 332 VSWNSLMVGFVRH-GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLI 390

Query: 63  QRLPIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            +   ++     N ++  + +  +M  A  +F  M EK+ +SW+++++GY +    ++++
Sbjct: 391 IKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESL 450

Query: 122 ELF------KVAPVKSVVA---------------------------------WTAMISGY 142
           ++F       V P + +VA                                 + ++++ Y
Sbjct: 451 KIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMY 510

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G +D A+ +F  M  K+++TW A+I GY +N    + LK    M+  G RP+  +  
Sbjct: 511 AKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFI 570

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            +L  CSH   +  G++  Q + K    K        +I ++ + G L++A +L  ++  
Sbjct: 571 GLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDV 630

Query: 262 K-DVVTWNAMISGYAQHGKGEKALR 285
           K D   W +++S    H   E A R
Sbjct: 631 KPDATVWKSLLSACRVHENLELAER 655


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/549 (44%), Positives = 332/549 (60%), Gaps = 40/549 (7%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F +   +D  S+  +I+G+     M +AR LF  MP K+ VSW+AMI+GY + G+  +A+
Sbjct: 187 FDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEAL 246

Query: 122 ELFK------VAPVKSVV--------------------AW-------------TAMISGY 142
            LF+      V P +S +                    +W              A+I  Y
Sbjct: 247 LLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMY 306

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G +  A +LFD+M  +++++WN MI GY      ++ L L R M+  G+ P   +  
Sbjct: 307 SKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFL 366

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S+L  C+HL ++ LGK +H  + K+     T+  T LI +Y KCG++  A ++F  ++ K
Sbjct: 367 SILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIK 426

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
            + +WNAMI G A HG+ +KA  LF KM  +G++P+ ITFV +L AC HAGLVDLG Q+F
Sbjct: 427 SLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFF 486

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            SMV DY I+ K  HY CM+DLLGRAG   EA  L++ M  KP  AI+G+LL ACR H R
Sbjct: 487 SSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGR 546

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           ++L E  A  LF L P N  G YV L+NIYA   KWDDVARIR  + +  + K+PG + I
Sbjct: 547 VELGELVAERLFELEPDN-PGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTI 605

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           EV  VVHEF  GD+VHP+   I+  L+E+++++K+ G+V D    L+ + EE KE  L  
Sbjct: 606 EVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSH 665

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSEKLAIAFGLI    GTPIR+ KNLRVC +CH ATK IS I  REII RD  RFHHFKD
Sbjct: 666 HSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKD 725

Query: 563 GTCSCGDYW 571
           G+CSC DYW
Sbjct: 726 GSCSCNDYW 734



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 248/502 (49%), Gaps = 63/502 (12%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G +  A  LF+ I +P++  +N M+  + ++    +A   FF R+ I      N+   
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALV-FFVRM-IYSGVEPNSYTF 132

Query: 79  GFVQKK-----NMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPV 129
            F+ K      +  + + +   + +   VS     +++I+ Y + G+++ A  +F  +  
Sbjct: 133 PFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNF 192

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           +  +++TA+I+GY  +G +D A +LFDEMP K++V+WNAMIAGY +   +++ L L   M
Sbjct: 193 RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDM 252

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
               + PN S++ SVL  C+  ++L LG  +   +    LC +   +  LI MY KCGDL
Sbjct: 253 RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL 312

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           + A +LF ++  +DV++WN MI GY      ++AL LF +M   G++P  ITF+++L +C
Sbjct: 313 QTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSC 372

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV----------------- 352
            H G +DLG ++  + +N    +      T ++DL  + G +V                 
Sbjct: 373 AHLGAIDLG-KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASW 431

Query: 353 --------------EAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAE--FAAM-N 392
                         +A +L  KM     +P    F  +LSAC+    +DL +  F++M  
Sbjct: 432 NAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQ 491

Query: 393 LFNLNP-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            + ++P +   GC + L       ++ +       S+ +N  VK  G  W   G+++   
Sbjct: 492 DYKISPKSQHYGCMIDLLGRAGLFEEAE-------SLLQNMEVKPDGAIW---GSLLGAC 541

Query: 452 RSGDRVH-PELVSIHEKLKELE 472
           R   RV   ELV+  E+L ELE
Sbjct: 542 RDHGRVELGELVA--ERLFELE 561



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 32/253 (12%)

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           S   + G +  A  LF+ +   NL  WN+MI G   +      L     MI  G+ PN+ 
Sbjct: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSY 130

Query: 200 SLSSVLLGCSHLSSLQLGKQVH-------------------------------QLVFKSP 228
           +   +L  C+ L+S   GKQ+H                               QLVF   
Sbjct: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
             +D  + T LI+ Y   G ++ A +LF E+  KDVV+WNAMI+GYAQ G+ ++AL LF+
Sbjct: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            M+   + P+  T V++L AC  +  +DLG     S + D G+ +       ++D+  + 
Sbjct: 251 DMRKANVPPNESTIVSVLSACAQSNALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKC 309

Query: 349 GKLVEAVDLIKKM 361
           G L  A +L   M
Sbjct: 310 GDLQTARELFDDM 322



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 169/396 (42%), Gaps = 61/396 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFD-----KIPQPDVVSYNIMLSCILLNSDDV 55
           M VK  V+WN+++AG+A Q G+ K+A  LF+      +P  +    +++ +C   N+ D+
Sbjct: 221 MPVKDVVSWNAMIAGYA-QMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDL 279

Query: 56  VAAFDFF--QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +   +   R    +    N +I  + +  ++  AR+LF  M E++ +SW+ MI GY  
Sbjct: 280 GNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTH 339

Query: 114 CGQLDKAVELFK------VAPVK----SVVAWTAMISG---------------------- 141
                +A+ LF+      V P +    S++   A +                        
Sbjct: 340 MCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSL 399

Query: 142 -------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
                  Y K G +  A ++FD M  K+L +WNAMI G   +  A+   +L   M   GI
Sbjct: 400 STSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGI 459

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            PN  +   +L  C H   + LG+Q    +V    +   +     +I +  + G  E+A 
Sbjct: 460 EPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAE 519

Query: 254 KLFLEIQRK-DVVTWNAMISGYAQHGKGE----KALRLFDKMKDEGMKPDSI-TFVALLL 307
            L   ++ K D   W +++     HG+ E     A RLF+      ++PD+   +V L  
Sbjct: 520 SLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFE------LEPDNPGAYVLLSN 573

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
               AG  D  +    + +ND G+   P   T  VD
Sbjct: 574 IYAGAGKWD-DVARIRTRLNDRGMKKVPGCTTIEVD 608



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 9/234 (3%)

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI--SMYCKCGDLEDACKLFLEIQRKDVVT 266
           S   S++  KQ+H  + K+ L     AL+ LI  S   + GD+  A  LF  I+  ++  
Sbjct: 37  SKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFI 96

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WN+MI G +       AL  F +M   G++P+S TF  LL +C        G Q   + V
Sbjct: 97  WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ-IHAHV 155

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
              G  +    +T ++++  ++G++  A  +  +  F+   + F  L++   +   +D A
Sbjct: 156 LKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAIS-FTALIAGYALWGYMDRA 214

Query: 387 E--FAAMNLFNLNPANA--AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
              F  M + ++   NA  AG Y Q+     A+  ++D+ +  +   E+ +V +
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAG-YAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/653 (39%), Positives = 371/653 (56%), Gaps = 84/653 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCIL------ 49
           M  +  V+W +++   A+ R KL +A EL++K+ Q    P+ V++ +++ SC        
Sbjct: 240 MKERNVVSWTAIIQANAQHR-KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNR 298

Query: 50  ------------LNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                       L +D VVA               A + F R+  +D  SW+ MI+G+ Q
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358

Query: 83  -----KKNMAKARDLFLAMPEK----NSVSW----------------------------- 104
                K+++ +   L   M  +    N V++                             
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418

Query: 105 ------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
                 +A+ + Y +CG + +A ++F     K+VVAW ++++ Y+K G +  AEK+F EM
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEM 478

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
            T+N+V+WN MIAGY ++       +LL  M   G +P+  ++ S+L  C  LS+L+ GK
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGK 538

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
            VH    K  L  DT   T LI MY KCG++ +A  +F +I  +D V WNAM++GY QHG
Sbjct: 539 LVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHG 598

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
            G +A+ LF +M  E + P+ ITF A++ AC  AGLV  G + F  M  D+ +     HY
Sbjct: 599 IGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHY 658

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            CMVDLLGRAG+L EA + I++MP +P  +++  LL AC+ H  + LAE+AA ++  L P
Sbjct: 659 GCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEP 718

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
           +NA+  YV L+NIYA   +WDD  ++R  M +  + K  G S IE+   +H F + D  H
Sbjct: 719 SNAS-VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAH 777

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           PE+ SIH +L+ L K MK AGY PD+ F LH V E  KE+ L  HSEKLAIA+GL+K P 
Sbjct: 778 PEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPP 837

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GTPIR+ KNLRVCGDCH ATK+IS I KREI+ RD  RFH+FK+GTCSCGD+W
Sbjct: 838 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 174/324 (53%), Gaps = 14/324 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           DV +    F+R+ ++D  +W++MI+ +    + AKA D F  M     E N +++ +++ 
Sbjct: 128 DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILK 187

Query: 110 GYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                  L+KA E+  V         V   TA+I+ Y K G++ LA ++F +M  +N+V+
Sbjct: 188 ACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVS 247

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W A+I    ++    +  +L   M+  GI PNA +  S+L  C+   +L  G+++H  + 
Sbjct: 248 WTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHIS 307

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK--- 282
           +  L  D      LI+MYCKC  ++DA + F  + ++DV++W+AMI+GYAQ G  +K   
Sbjct: 308 ERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESL 367

Query: 283 --ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
               +L ++M+ EG+ P+ +TF+++L AC+  G ++ G Q   + ++  G  +     T 
Sbjct: 368 DEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTA 426

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFK 364
           + ++  + G + EA  +  KM  K
Sbjct: 427 IFNMYAKCGSIYEAEQVFSKMENK 450



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 206/497 (41%), Gaps = 126/497 (25%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL---NSDDVVA 57
           M ++  V W+S++A +A      K A + F+++   ++    I    IL    N   +  
Sbjct: 139 MTLRDVVTWSSMIAAYAGNNHPAK-AFDTFERMKDANIEPNRITFLSILKACNNYSMLEK 197

Query: 58  AFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           A +    +       D A    +I+ + +   ++ A ++F  M E+N VSW+A+I    +
Sbjct: 198 AREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQ 257

Query: 114 CGQLDKAVELFK------VAP---------------------------------VKSVVA 134
             +L++A EL++      ++P                                    VV 
Sbjct: 258 HRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVV 317

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE-----DGLKLLRMM 189
             A+I+ Y K   +  A + FD M  +++++W+AMIAGY ++ + +     +  +LL  M
Sbjct: 318 ANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERM 377

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC----- 244
              G+ PN  +  S+L  CS   +L+ G+Q+H  + K     D +  T + +MY      
Sbjct: 378 RREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSI 437

Query: 245 --------------------------KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
                                     KCGDL  A K+F E+  ++VV+WN MI+GYAQ G
Sbjct: 438 YEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSG 497

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ------- 320
              K   L   MK EG +PD +T +++L AC            HA  V LG++       
Sbjct: 498 DIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVAT 557

Query: 321 -----------------YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-- 361
                             FD + N   +A     +  M+   G+ G   EAVDL K+M  
Sbjct: 558 SLIGMYSKCGEVTEARTVFDKISNRDTVA-----WNAMLAGYGQHGIGPEAVDLFKRMLK 612

Query: 362 -PFKPQPAIFGTLLSAC 377
               P    F  ++SAC
Sbjct: 613 ERVPPNEITFTAVISAC 629



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 210/478 (43%), Gaps = 72/478 (15%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++I+ Y KFG V   E++F  M  +++VTW++MIA Y  N+           M    I 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  +  S+L  C++ S L+  +++H +V  S +  D    T LI+MY KCG++  AC++
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F +++ ++VV+W A+I   AQH K  +A  L++KM   G+ P+++TFV+LL +CN    +
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEAL 296

Query: 316 DLGIQYFDSMVNDYGIA-----------------------------AKPD--HYTCMVDL 344
           + G +   S +++ G+                              +K D   ++ M+  
Sbjct: 297 NRG-RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAG 355

Query: 345 LGRAG-----KLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
             ++G      L E   L+++M  +   P    F ++L AC VH  L+        +  +
Sbjct: 356 YAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV---VHEFRS 453
              +       + N+YA      +  ++   M+  NVV     +W  + T+     +  S
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV-----AWASLLTMYIKCGDLTS 470

Query: 454 GDRVHPELVSIH-----------------EKLKELEKRMKLAGYVPD---LEFALHAVGE 493
            ++V  E+ + +                  K+ EL   MK+ G+ PD   +   L A G 
Sbjct: 471 AEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGA 530

Query: 494 -EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
               E+  L H+E + +      V   + I ++     CG+   A      I  R+ +
Sbjct: 531 LSALERGKLVHAEAVKLGLESDTVVATSLIGMYSK---CGEVTEARTVFDKISNRDTV 585



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 123/250 (49%), Gaps = 7/250 (2%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           AM S     G     E+L           W    AG ++     + ++LL ++   G+  
Sbjct: 22  AMTSIVYNNGFASTGEELAGPRSVSGGEVWRLCKAGRLK-----EAIQLLGIIKQRGLLV 76

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N+++   ++  C+ L   + GK VH+ + +  L  D      LI+ Y K GD+    ++F
Sbjct: 77  NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  +DVVTW++MI+ YA +    KA   F++MKD  ++P+ ITF+++L ACN+  +++
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
              +   ++V   G+       T ++ +  + G++  A ++ +KM  +     +  ++ A
Sbjct: 197 KA-REIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMK-ERNVVSWTAIIQA 254

Query: 377 CRVHKRLDLA 386
              H++L+ A
Sbjct: 255 NAQHRKLNEA 264


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 329/557 (59%), Gaps = 41/557 (7%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +V A   F  +  +D  SWNTMI G+ +   + +AR LF  MP++++ SW+A ISGY+  
Sbjct: 138 LVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTH 197

Query: 115 GQLDKAVELFKVAPVKSV----------------------------------------VA 134
            Q  +A+ELF+V                                              V 
Sbjct: 198 NQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVV 257

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W+A++  Y K G +D A  +FD+M  +++V+W  MI    E+   E+G  L R ++  G+
Sbjct: 258 WSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGV 317

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RPN  + + VL  C+  ++  LGK+VH  +  +     + A++ L+ MY KCG+   A +
Sbjct: 318 RPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARR 377

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E+ + D+V+W ++I GYAQ+G+ ++AL  F+ +   G KPD +T+V +L AC HAGL
Sbjct: 378 VFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGL 437

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           VD G++YF S+   +G+    DHY C++DLL R+G+  EA ++I  MP KP   ++ +LL
Sbjct: 438 VDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLL 497

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
             CR+H  L+LA+ AA  L+ + P N A  Y+ LANIYA    W +VA +R  M    +V
Sbjct: 498 GGCRIHGNLELAKRAAKALYEIEPENPA-TYITLANIYANAGLWSEVANVRKDMDNMGIV 556

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SWIE+   VH F  GD  HP+   IHE L EL K++K  GYVPD  F LH V EE
Sbjct: 557 KKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEE 616

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KEQ L++HSEKLA+ FG+I  P GTPI+VFKNLR C DCH A KYIS I +R+I VRD+
Sbjct: 617 QKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDS 676

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFH F+DG+CSC DYW
Sbjct: 677 NRFHCFEDGSCSCKDYW 693



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 32/231 (13%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM------------------- 169
           V  V     ++  Y K G +  A+ LFDEM  ++L +WN M                   
Sbjct: 119 VPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDE 178

Query: 170 ------------IAGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQL 216
                       I+GYV ++   + L+L R+M        N  +LSS L   + +  L+L
Sbjct: 179 MPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRL 238

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK++H  + ++ L  D    + L+ +Y KCG L++A  +F +++ +DVV+W  MI    +
Sbjct: 239 GKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFE 298

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            G+ E+   LF  +   G++P+  TF  +L AC       LG +    M++
Sbjct: 299 DGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMH 349



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP+A   S+++  C    +L+LG++VH     S           L+ MY KCG L DA  
Sbjct: 84  RPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQM 143

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           LF E+  +D+ +WN MI GYA+ G+ E+A +LFD+M
Sbjct: 144 LFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM 179


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/569 (42%), Positives = 347/569 (60%), Gaps = 10/569 (1%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G +  A+++FD++P+ +VV YN ++   L+    V  +   F  +  +D+
Sbjct: 182 SPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMG-LMRCGRVEDSKRLFFEMRERDS 240

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECG-----QLDKAVELF 124
            SW +MI+GF Q      A D+F  M  +N  +      S    CG     Q  K V  +
Sbjct: 241 ISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAY 300

Query: 125 --KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
             +     ++   +A++  Y K   +  AE +F +M  KN+V+W AM+ GY +N ++E+ 
Sbjct: 301 IIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEA 360

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           +K    M   GI P+  +L SV+  C++L+SL+ G Q H     S L    T    L+++
Sbjct: 361 VKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTL 420

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG +ED+ +LF EI  KD VTW A++SGYAQ GK  + + LF+ M   G+KPD +TF
Sbjct: 421 YGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTF 480

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + +L AC+ AGLV+ G Q F+SM+N++GI    DHYTCM+DL  RAG++ EA + I KMP
Sbjct: 481 IGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMP 540

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F P    + TLLS+CR +  +D+ ++AA  L  L+P N A  YV L+++YAA  KW++VA
Sbjct: 541 FSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS-YVLLSSVYAAKGKWEEVA 599

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           R+R  M++  + K PG SWI+    VH F + D+ +P    I+ +L++L  +M   GYVP
Sbjct: 600 RLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVP 659

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D+   LH VG+  K ++L  HSEKLAIAFGL+ +P G PIRV KNLRVC DCH ATKYIS
Sbjct: 660 DMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYIS 719

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I  REI+VRDT RFH FKDGTCSCGD+W
Sbjct: 720 KITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 200/399 (50%), Gaps = 46/399 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-FQRLPIK 68
           N++++ +AK  G +  A ++FD++P P++ S+N +LS    +    V+  ++ F  +P +
Sbjct: 48  NNLISSYAKL-GSIPYACKVFDQMPHPNLYSWNTILSA--YSKLGRVSEMEYLFDAMPRR 104

Query: 69  DTASWNTMISGF---------VQKKNMAKARD------------LFLAMPEKNSVSWSAM 107
           D  SWN++ISG+         V+  N+    D            L +   ++  V     
Sbjct: 105 DGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQ 164

Query: 108 ISG--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
           I G                    Y + G +  A ++F   P K+VV +  +I G M+ G+
Sbjct: 165 IHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGR 224

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           V+ +++LF EM  ++ ++W +MI G+ +N    D + + R M    ++ +  +  SVL  
Sbjct: 225 VEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTA 284

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C  + +LQ GKQVH  + ++    +    + L+ MYCKC +++ A  +F ++  K+VV+W
Sbjct: 285 CGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSW 344

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            AM+ GY Q+G  E+A++ F  M+  G++PD  T  +++ +C +   ++ G Q+    + 
Sbjct: 345 TAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALT 404

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             G+ +       +V L G+ G + ++  L  ++ FK +
Sbjct: 405 S-GLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDE 442



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 150/323 (46%), Gaps = 44/323 (13%)

Query: 82  QKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           +  N  KA++L       +P   +   + +IS Y + G +  A ++F   P  ++ +W  
Sbjct: 21  ETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNT 80

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIR 195
           ++S Y K G+V   E LFD MP ++ V+WN++I+GY         +K   +M+       
Sbjct: 81  ILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFN 140

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK---------- 245
            N  + S++L+  S    ++LG+Q+H  V K          +PL+ MY K          
Sbjct: 141 LNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKV 200

Query: 246 ---------------------CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                                CG +ED+ +LF E++ +D ++W +MI+G+ Q+G    A+
Sbjct: 201 FDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAI 260

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHY--TCM 341
            +F +MK E ++ D  TF ++L AC     +  G Q    ++  DY    K + +  + +
Sbjct: 261 DIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY----KDNIFVASAL 316

Query: 342 VDLLGRAGKLVEAVDLIKKMPFK 364
           VD+  +   +  A  + KKM  K
Sbjct: 317 VDMYCKCKNIKSAEAVFKKMTCK 339



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C    +    K +H  + K+    +T  L  LIS Y K G +  ACK+F ++   ++ +W
Sbjct: 19  CCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSW 78

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           N ++S Y++ G+  +   LFD M     + D +++ +L+      GL+   ++ ++ M+ 
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 328 DYG 330
           + G
Sbjct: 135 NDG 137


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 356/607 (58%), Gaps = 47/607 (7%)

Query: 10  NSVLAGFAK--QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+++A + K    G  +DA+++ D++P+ D +++  ++    +   DV AA   F+ +  
Sbjct: 200 NALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIV-VGHVRKGDVHAARSAFEEIDG 258

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM------------------------------- 96
           +    WN MISG+VQ    A+A +LF  M                               
Sbjct: 259 EFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSV 318

Query: 97  ------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
                       PE      +A+++ Y + G++  A ++F    +K VV+W  ++SGY++
Sbjct: 319 HGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIE 378

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G +D A ++F EMP K+ ++W  M++GYV    AED LKL   M    ++P   + +  
Sbjct: 379 SGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGA 438

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           +  C  L +L+ GKQ+H  + +       +A   L++MY +CG ++DA  +FL +   D 
Sbjct: 439 VAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDS 498

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V+WNAMIS   QHG G +AL LFD+M  +G+ PD I+F+ +L ACNHAGLVD G QYF+S
Sbjct: 499 VSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFES 558

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M  D+GI+   DHY  ++DLLGRAG++ EA DLIK MPF+P PAI+  +LS CR++  ++
Sbjct: 559 MERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDME 618

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           L  +AA  LF + P +  G Y+ L+N Y+A  +W D AR+R  M++  V K PG SWIEV
Sbjct: 619 LGAYAADQLFKMVPEH-DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 677

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
           G  VH F  GD  HP+   ++  L+ +  +M+  GYVPD +FAL  +    KE +L  HS
Sbjct: 678 GNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHS 737

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           E+LA++FGL+K+P G  + V KNL++CGDCH A  ++S    REI+VRD  RFHHFKDG 
Sbjct: 738 ERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGE 797

Query: 565 CSCGDYW 571
           CSCG+YW
Sbjct: 798 CSCGNYW 804



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 191/443 (43%), Gaps = 88/443 (19%)

Query: 21  GKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA------S 72
           G+L+D+   FD +P  + D V +N M+S     +     A   F+ L   D +      S
Sbjct: 103 GRLRDSAAFFDSVPVARRDTVLHNAMISA-FARASLAAPAVSVFRSLLASDDSLRPDDYS 161

Query: 73  WNTMISGFVQKKNMAKAR--DLFLAMPEKN-----SVSWSAMISGYIEC---GQLDKAVE 122
           + +++S   Q  ++A +    L  A+ +       SVS +A+I+ Y++C   G    A +
Sbjct: 162 FTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVS-NALIALYMKCDAPGVTRDARK 220

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +    P K  + WT ++ G+++ G V  A   F+E+  +  V WNAMI+GYV++    + 
Sbjct: 221 VLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEA 280

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH--------------------- 221
            +L R M+   I P+  + +S+L  C++      GK VH                     
Sbjct: 281 FELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNA 340

Query: 222 --------------QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
                           +F S   KD  +   ++S Y + G L++A ++F E+  K  ++W
Sbjct: 341 LVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSW 400

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV- 326
             M+SGY   G  E AL+LF++M+ E +KP   T+   + AC   G +  G Q    +V 
Sbjct: 401 MVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQ 460

Query: 327 ------NDYGIAAKPDHYTC-----------------------MVDLLGRAGKLVEAVDL 357
                 N  G A    +  C                       M+  LG+ G   EA++L
Sbjct: 461 CGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALEL 520

Query: 358 IKKMPFK---PQPAIFGTLLSAC 377
             +M  +   P    F T+L+AC
Sbjct: 521 FDQMVAQGIYPDRISFLTILTAC 543



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 120/285 (42%), Gaps = 45/285 (15%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNAMIAGYVENSWAE 180
           LF+  P    VA T+++S Y   G++  +   FD +P   ++ V  NAMI+ +   S A 
Sbjct: 82  LFRADP--GPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAA 139

Query: 181 DGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTAL 236
             + + R ++     +RP+  S +S+L     +  L +    Q+H  V K       +  
Sbjct: 140 PAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVS 199

Query: 237 TPLISMYCKC---GDLEDACKLFLEIQRKDVVT--------------------------- 266
             LI++Y KC   G   DA K+  E+  KD +T                           
Sbjct: 200 NALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGE 259

Query: 267 ----WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY- 321
               WNAMISGY Q G   +A  LF +M  + + PD  TF +LL AC +AG    G    
Sbjct: 260 FDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVH 319

Query: 322 --FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             F  +  D+   A       +V L  ++GK+  A  +   M  K
Sbjct: 320 GQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK 364


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/522 (43%), Positives = 328/522 (62%), Gaps = 2/522 (0%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           N  D+ AA   F     +D  SWN MI G+V+   M  AR +F  M  ++ +SW+ MI+G
Sbjct: 242 NGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMING 301

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y   G++D+A  LF   P +++V+W +M++G++K G V+ A  LF EMP +++V+WN+M+
Sbjct: 302 YAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSML 361

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A Y +     + L L   M  +G++P  +++ S+L  C+HL +L  G  +H  +  + + 
Sbjct: 362 ACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIE 421

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++   T L+ MY KCG +  A ++F  ++ KDV+ WN +I+G A HG  ++A +LF +M
Sbjct: 422 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEM 481

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           K+ G++P+ ITFVA+L AC+HAG+VD G +  D M + YGI  K +HY C++DLL RAG 
Sbjct: 482 KEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGF 541

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA++LI  MP +P P+  G LL  CR+H   +L E     L NL P + +G Y+ L+N
Sbjct: 542 LEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCH-SGRYILLSN 600

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYAA KKWDD  ++R  MK N + K+PG S IE+  +VH F +GD  HPE   I+EKL E
Sbjct: 601 IYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNE 660

Query: 471 LEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +  R+K A GY  D    L  + EE KE  L  HSEKLAIA+GL+ +     IR+ KNLR
Sbjct: 661 IHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLR 720

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH   K IS +  REIIVRD  RFHHF+DG CSC D+W
Sbjct: 721 VCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 82/369 (22%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD- 60
           + +  V+WN+++ G+ K   ++  A+ +FD++   DV+S+N M     +N   +V   D 
Sbjct: 257 SARDVVSWNAMIDGYVKHV-EMGHARMVFDRMVCRDVISWNTM-----INGYAIVGKIDE 310

Query: 61  ---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
               F  +P ++  SWN+M++GFV+  N+  A  LF  MP ++ VSW++M++ Y +CG+ 
Sbjct: 311 AKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKP 370

Query: 118 DKAVELFK------VAPVKSVV---------------------------------AWTAM 138
           ++A+ LF       V P ++ V                                   TA+
Sbjct: 371 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 430

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y K GK+ LA ++F+ M +K+++ WN +IAG   +   ++  +L + M   G+ PN 
Sbjct: 431 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPND 490

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +  ++L  CSH   +  G+++   +  S        + P +  Y               
Sbjct: 491 ITFVAILSACSHAGMVDEGQKLLDCMSSS------YGIEPKVEHY--------------- 529

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
                      +I   A+ G  E+A+ L   M    M+P+     ALL  C   G  +LG
Sbjct: 530 ---------GCVIDLLARAGFLEEAMELIGTMP---MEPNPSALGALLGGCRIHGNFELG 577

Query: 319 IQYFDSMVN 327
                 ++N
Sbjct: 578 EMVGKRLIN 586



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 154/375 (41%), Gaps = 68/375 (18%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+ +F  +       +N++I     +    + L L   M+  G++P+  +   V+  C+ 
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            S    G  VH  V KS    D+  ++ LI +Y    DL  A +LF     +DVV+WNAM
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 271 ISGYAQH-------------------------------GKGEKALRLFDKMKDEGMKPDS 299
           I GY +H                               GK ++A RLFD+M +  +    
Sbjct: 268 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL---- 323

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +++ ++L      G V+     F  M     ++     +  M+    + GK  EA+ L  
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS-----WNSMLACYAQCGKPNEALALFD 378

Query: 360 KM---PFKPQPAIFGTLLSAC----RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           +M     KP  A   +LLSAC     + K L L  +   N   +N          L ++Y
Sbjct: 379 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA----LVDMY 434

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A   K     ++  +M+  +V+     +W    T++    +G  +H  +    ++ ++L 
Sbjct: 435 AKCGKISLATQVFNAMESKDVL-----AW---NTII----AGMAIHGNV----KEAQQLF 478

Query: 473 KRMKLAGYVP-DLEF 486
           K MK AG  P D+ F
Sbjct: 479 KEMKEAGVEPNDITF 493


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/557 (41%), Positives = 328/557 (58%), Gaps = 41/557 (7%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +V A   F  +  +D  SWN MISG+V+  N  KAR+LF  MP +++ SW+A+ISG ++ 
Sbjct: 169 LVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQH 228

Query: 115 GQLDKAVELFKVAPVKSV----------------------------------------VA 134
            + ++A+EL+++                                              V 
Sbjct: 229 NRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVV 288

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W +++  Y K G ++ A  +FD+M  +++V+W  MI  Y++N   E+G  L R ++   I
Sbjct: 289 WCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNI 348

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  + + VL  C+ L++  LGKQ+H  + +      ++A + L+ MY KCGD+E+A  
Sbjct: 349 MPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKS 408

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  + + D+ +W +++ GYAQHG+ +KAL  F+ +   G KPD I F+ +L AC HAGL
Sbjct: 409 VFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGL 468

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           VD G++YF S+   +G+    DHY C++DLL RAG+  EA  +I +MP KP   I+  LL
Sbjct: 469 VDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALL 528

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
             CR+H  L+LA+ AA +LF + P N A  YV LANIYA+     + A IR +M    +V
Sbjct: 529 GGCRIHGNLELAKRAAKSLFEIEPENPA-TYVTLANIYASAGMRAEEANIRETMDSRGIV 587

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SWIE+   VH F  GD  HP+   I E L EL KRMK  GYVPD  F LH V  E
Sbjct: 588 KKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELE 647

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE+ L +HSEKLA+AFG+I  P GTPI+VFKNLR C DCH A K+IS I  R+IIVRD+
Sbjct: 648 QKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDS 707

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFH F+ G+CSC DYW
Sbjct: 708 NRFHCFEGGSCSCKDYW 724



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 5/115 (4%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P AS   ++L  C    +L+ GKQVH  + K+           L+ MY KCG L DA K
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +F E+  +D+ +WN MISGY + G  EKA  LFDKM +     D+ ++ A++  C
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGC 225


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/561 (43%), Positives = 339/561 (60%), Gaps = 46/561 (8%)

Query: 56  VAAFDF----FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           V   DF    F +  ++D  S+  +I+G+V +  +  AR LF  +P K+ VSW+AMISGY
Sbjct: 179 VGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGY 238

Query: 112 IECGQLDKAVELF------KVAPVKSVV--------------------AW---------- 135
           ++ G+ ++A+  F       V P KS +                    +W          
Sbjct: 239 VQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNL 298

Query: 136 ---TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
               A+I  Y K G+ D+A +LFD +  K++++WN MI GY   S  E+ L L  +M+  
Sbjct: 299 QLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRS 358

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLED 251
            ++PN  +   +L  C+ L +L LGK VH  + K+       +L T LI MY KCG +E 
Sbjct: 359 NVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEA 418

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLACN 310
           A ++F  +  +++ +WNAM+SG+A HG  E+AL LF +M ++G+ +PD ITFV +L AC 
Sbjct: 419 AERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACT 478

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
            AGLVDLG QYF SM+ DYGI+ K  HY CM+DLL RA K  EA  L+K M  +P  AI+
Sbjct: 479 QAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIW 538

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G+LLSAC+ H R++  E+ A  LF L P NA G +V L+NIYA   +WDDVARIR  + +
Sbjct: 539 GSLLSACKAHGRVEFGEYVAERLFQLEPENA-GAFVLLSNIYAGAGRWDDVARIRTRLND 597

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K+PG + IE+   VHEF  GD+ HPE  +I++ L E++K ++  G+VP+    L+ 
Sbjct: 598 KGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYD 657

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           + EE KE  L  HSEKLAI+FGLIK   GT IR+ KNLRVCG+CH ATK IS I  REII
Sbjct: 658 MDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREII 717

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
            RD  RFHHFKDG CSC D W
Sbjct: 718 ARDRNRFHHFKDGFCSCNDCW 738



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 160/289 (55%), Gaps = 3/289 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y   G++D A  +F  + ++  V++TA+I+GY+  G +D A +LFDE+P K++V
Sbjct: 170 TSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVV 229

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNAMI+GYV++   E+ +     M    + PN S++  VL  C H  S +LGK +   V
Sbjct: 230 SWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWV 289

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             +    +      LI MYCKCG+ + A +LF  I+ KDV++WN MI GY+     E+AL
Sbjct: 290 RDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEAL 349

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF+ M    +KP+ +TF+ +L AC   G +DLG      +  +   ++    +T ++D+
Sbjct: 350 ALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDM 409

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAM 391
             + G  +EA + + +       A +  +LS   +H   +  LA F+ M
Sbjct: 410 YAKCG-CIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEM 457



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 70/357 (19%)

Query: 146 GKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           G +  A  LF+E       N+  WN++I GY  +S     L L   M+  G++PN+ +  
Sbjct: 76  GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFP 135

Query: 203 SVLLGCSHLSSLQLGKQVH-------------------------------QLVFKSPLCK 231
            +   C+   +   GKQ+H                               +LVF     +
Sbjct: 136 FLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLR 195

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D  + T LI+ Y   G L+DA +LF EI  KDVV+WNAMISGY Q G+ E+A+  F +M+
Sbjct: 196 DAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ 255

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           +  + P+  T V +L AC H    +LG ++  S V D G  +       ++D+  + G+ 
Sbjct: 256 EANVLPNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314

Query: 352 ---------VEAVDLIK-------------------------KMPFKPQPAIFGTLLSAC 377
                    +E  D+I                          +   KP    F  +L AC
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374

Query: 378 RVHKRLDLAEFAAMNL-FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
                LDL ++    +  NL  ++ A  +  L ++YA     +   R+  SM   N+
Sbjct: 375 ACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 162/396 (40%), Gaps = 113/396 (28%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF 59
           +++  V++ +++ G+  Q G L DA+ LFD+IP  DVVS+N M+S  + +   ++ +  F
Sbjct: 193 SLRDAVSFTALITGYVSQ-GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCF 251

Query: 60  DFFQR---LPIKDT--------------------ASW-------------NTMISGFVQK 83
              Q    LP K T                     SW             N +I  + + 
Sbjct: 252 YEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKC 311

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----------- 132
                AR+LF  + EK+ +SW+ MI GY      ++A+ LF+V    +V           
Sbjct: 312 GETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGIL 371

Query: 133 -----------------------------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
                                          WT++I  Y K G ++ AE++F  M ++NL
Sbjct: 372 HACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            +WNAM++G+  +  AE  L L   M+  G+ RP+  +   VL  C+    + LG Q   
Sbjct: 432 ASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQ--- 488

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
             F+S +      ++P +  Y                          MI   A+  K E+
Sbjct: 489 -YFRSMI--QDYGISPKLQHY------------------------GCMIDLLARAEKFEE 521

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           A  L   MK+  M+PD   + +LL AC   G V+ G
Sbjct: 522 AEIL---MKNMEMEPDGAIWGSLLSACKAHGRVEFG 554



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 13/223 (5%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCK---CGDLEDACKLFLEIQ---RKDVVTWNAMI 271
           KQ+H L+ K+ L       + LI  +C     GDL  A  LF E Q   + +V  WN++I
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIH-FCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLI 103

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            GY+       +L LF +M   G++P+S TF  L  +C  A     G Q   +      +
Sbjct: 104 RGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQ-LHAHALKLAL 162

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
              P  +T ++ +    G++  A  +  K   +   + F  L++       LD     A 
Sbjct: 163 HFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVS-FTALITGYVSQGCLD----DAR 217

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            LF+  P      +  + + Y    ++++       M+E NV+
Sbjct: 218 RLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/613 (39%), Positives = 355/613 (57%), Gaps = 52/613 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDFFQ 63
           WN++L+G  +   +  +A  LF ++    V    + +S     C+LL    +  A   + 
Sbjct: 138 WNAMLSGLCRN-ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYA 196

Query: 64  RLPIKDTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                D   +  N MI  + +   + + R +F  M  ++ V+W+++ISG+ + GQ+  AV
Sbjct: 197 VKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAV 256

Query: 122 ELF------KVAP----------------------------------VKSVVAWTAMISG 141
           E+F       V+P                                  V  ++A  A++  
Sbjct: 257 EMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM 316

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASS 200
           Y K  K++ A+++FD MP ++ V+WN +I GY++N  A + + +   M    G++P   +
Sbjct: 317 YAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGT 376

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
             SVL   SHL +LQ G ++H L  K+ L  D    T +I +Y KCG L++A  LF +  
Sbjct: 377 FVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP 436

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           R+    WNA+ISG   HG G KAL LF +M+ EG+ PD +TFV+LL AC+HAGLVD G  
Sbjct: 437 RRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRN 496

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +F+ M   YGI     HY CMVD+ GRAG+L +A D I+ MP KP  AI+G LL ACR+H
Sbjct: 497 FFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIH 556

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
             +++ + A+ NLF L+P N  G YV ++N+YA + KWD V  +R  ++  N+ K PG+S
Sbjct: 557 GNVEMGKVASQNLFELDPKN-VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWS 615

Query: 441 WIEVGTVVHEFRSGDR--VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            IEV   V+ F SG++  +HP+   I  +L +L  +++  GYVPD  F L  V E+ KEQ
Sbjct: 616 SIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQ 675

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
           +L  HSE+LAIAFG+I  P  TP+ ++KNLRVCGDCH ATKYIS I +REIIVRD+ RFH
Sbjct: 676 ILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFH 735

Query: 559 HFKDGTCSCGDYW 571
           HFKDG CSCGD+W
Sbjct: 736 HFKDGYCSCGDFW 748



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 170/373 (45%), Gaps = 45/373 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---- 124
           D  +   ++  +++   +  A   F  M  ++  +W+AM+SG     +  +AV LF    
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 125 ------KVAPVKSVVAW-----------------------------TAMISGYMKFGKVD 149
                     V SV+                                AMI  Y K G ++
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
              K+FD M +++LVTWN++I+G+ +       +++   M   G+ P+  +L S+    +
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 210 HLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
               +  G+ VH  +V +     D  A   ++ MY K   +E A ++F  +  +D V+WN
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWN 342

Query: 269 AMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            +I+GY Q+G   +A+ ++D M K EG+KP   TFV++L A +H G +  G +   ++  
Sbjct: 343 TLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTR-MHALSI 401

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR--LDL 385
             G+       TC++DL  + GKL EA+ L ++ P +     +  ++S   VH      L
Sbjct: 402 KTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHGHGAKAL 460

Query: 386 AEFAAMNLFNLNP 398
           + F+ M    ++P
Sbjct: 461 SLFSQMQQEGISP 473



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 10/148 (6%)

Query: 219 QVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           Q+H    +  L + D  A   L+  Y + G + DA + F E++ +DV  WNAM+SG  ++
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
            +  +A+ LF +M  EG+  D++T  ++L  C     V LG +     ++ Y +    D 
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMC-----VLLGDRALALAMHLYAVKHGLDD 203

Query: 338 --YTC--MVDLLGRAGKLVEAVDLIKKM 361
             + C  M+D+ G+ G L E   +   M
Sbjct: 204 ELFVCNAMIDVYGKLGMLEEVRKVFDGM 231


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/474 (46%), Positives = 309/474 (65%), Gaps = 1/474 (0%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           E + V  +A++  Y  CG L+ A  +F     +S   W AMI+G+ +   +  A KLF E
Sbjct: 42  ESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYE 101

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M  +++V+W A+IAGY +N + ++ L +   M   G++ +   + SVL  C+ L++L+LG
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG 161

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +Q H  V +S    D    + L+ MY K G +EDAC++F ++ +++ V+WN++I+G AQH
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G+G  A+ LF++M   G+KP+ I+FV +L AC+H GLV+ G  YF+ M  +YGI     H
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           YTCM+DLLGRAG L EA + I  MP +P  +++G LL ACR+H   +LA+  A +L  + 
Sbjct: 282 YTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGM- 340

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
               AG YV L+NIYAA  +WDD A++R  MK+  V+K PGYSWIEV T++H F +G+  
Sbjct: 341 EVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETS 400

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP+L  IHE L+ L ++MK AGYVP+  F L  V ++ KE  L  HSEKLAIAFG+I   
Sbjct: 401 HPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTN 460

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            GT IRV KNLRVCGDCH   K+IS    R+I+VRD  RFHHFKDG CSCGDYW
Sbjct: 461 PGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 33/225 (14%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+G G++PN  +LS+V+  C+ ++SL+ GKQ H  + K     D    T L+ MY +CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 249 LEDACKLFLEIQRKDVVTWNAMIS-------------------------------GYAQH 277
           LEDA  +F ++  +   TWNAMI+                               GYAQ+
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G G+++L +F++M+  GMK D     ++L AC     ++LG Q F + V   G A     
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVV 179

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            + +VD+  ++G + +A  +  KMP + + + + ++++ C  H R
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGR 223



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 41/270 (15%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F ++  + T +WN MI+G  Q ++M KA  LF  M E++ VSW+A+I+GY + G  D+++
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127

Query: 122 ELF---KVAPVKS------------------------------------VVAWTAMISGY 142
            +F   +   +KS                                    +V  +A++  Y
Sbjct: 128 NVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMY 187

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G ++ A ++FD+MP +N V+WN++I G  ++    D + L   M+  GI+PN  S  
Sbjct: 188 AKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFV 247

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ- 260
            VL  CSH   +  G+    L+ ++  +  D +  T +I +  + G L++A      +  
Sbjct: 248 GVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV 307

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
             DV  W A++     HG  E A R+ + +
Sbjct: 308 EPDVSVWGALLGACRIHGNTELAKRIAEHL 337



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 22/201 (10%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLN-SDDVVAAFDFFQRLPIK 68
           S L     + G ++DA ++FDK+PQ + VS+N I+  C      +D V  F+   +  IK
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 69  -DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-----SWSAMISGYIECGQLDKAVE 122
            +  S+  ++S       + + R  F  M +   +      ++ MI      G LD+A  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 123 LFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG-YV--ENSW 178
                PV+  V  W A++      G  +LA+++      ++L+     IAG YV   N +
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRI-----AEHLLGMEVQIAGIYVLLSNIY 355

Query: 179 A-----EDGLKLLRMMIGLGI 194
           A     +D  K+ ++M   G+
Sbjct: 356 AAAGQWDDAAKVRKLMKDRGV 376


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/569 (43%), Positives = 345/569 (60%), Gaps = 10/569 (1%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G + DA  +F++IP+ ++V YN M++  LL    +V A   F  +P KD+
Sbjct: 177 SPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITG-LLRCRFIVEAEQLFDNMPEKDS 235

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECG---QLDKAVEL--- 123
            SW T+I+G  Q     +A D F  M  E   +      S    CG    LD+  ++   
Sbjct: 236 ISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAY 295

Query: 124 -FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
             +     ++   +A++  Y K   V  AE +F +M  KN+++W AM+ GY +N ++E+ 
Sbjct: 296 IIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEA 355

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           +++   M    I P+  +L SV+  C++L+SL+ G Q H     S L    T    LI++
Sbjct: 356 VRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITL 415

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG LE A +LF E++ +D V+W A++SGYAQ GK  + + LF+ M   G+ PD +TF
Sbjct: 416 YGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTF 475

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V +L AC+ AGLV+ G  YF+ MV ++ I   PDHYTCM+DLL RAG+L EA + I +MP
Sbjct: 476 VGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMP 535

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F P    + TLLS+CR++  L++ ++AA +L  L P N A  Y+ L++IYAA  KWDDVA
Sbjct: 536 FSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPAS-YILLSSIYAAKGKWDDVA 594

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           ++R  M+E  V K PG+SWI+    VH F + DR  P    I+ KL+ L  +M   GYVP
Sbjct: 595 KLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVP 654

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D+ F LH V +  K ++L  HSEKLAIAFGL+ +P G  IRV KNLRVCGDCH ATKYIS
Sbjct: 655 DMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYIS 714

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I +REI+VRD  RFH FKDG CSCGD+W
Sbjct: 715 RITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 131/251 (52%), Gaps = 13/251 (5%)

Query: 82  QKKNMAKARDLF------LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           + +N A+ + L       L  PE  +  ++ +I+ Y + G L  A  +F   P  ++ +W
Sbjct: 17  EARNRAQVKKLHCRIIRTLTNPE--TFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSW 74

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-I 194
             ++S Y K G +   +++FD MP  ++V+WN++++GY  N    + +++  MM+  G +
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             N  + S++L+  S+   + LG+Q+H  +FK          +PL+ MY K G + DA +
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F EI  K++V +N MI+G  +     +A +LFD M ++    DSI++  ++      GL
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEK----DSISWTTIITGLTQNGL 250

Query: 315 VDLGIQYFDSM 325
               +  F  M
Sbjct: 251 FKEAVDKFKEM 261


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 361/614 (58%), Gaps = 49/614 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDF 61
           +  V+W +++AGFA Q G++ +A   F+K+ +  +    +    IL   +S   +     
Sbjct: 376 RNVVSWTAMIAGFA-QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 62  FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            Q   I+     D      ++S + +  ++  A  +F  + ++N V+W+AMI+ Y++  Q
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 117 LDKAVELFK------VAPVKSVVA----------------W-----------------TA 137
            D A+  F+      + P  S                   W                  A
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNA 554

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S ++  G +  A+ LF++MP ++LV+WN +IAG+V++   +      +MM   GI+P+
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + + +L  C+   +L  G+++H L+ ++    D    T LISMY KCG +EDA ++F 
Sbjct: 615 KITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFH 674

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++ +K+V +W +MI+GYAQHG+G++AL LF +M+ EG+KPD ITFV  L AC HAGL++ 
Sbjct: 675 KLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEE 734

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G+ +F SM  ++ I  + +HY CMVDL GRAG L EAV+ I KM  +P   ++G LL AC
Sbjct: 735 GLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC 793

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           +VH  ++LAE AA     L+P N  G +V L+NIYAA   W +VA++R  M +  VVK P
Sbjct: 794 QVHLNVELAEKAAQKKLELDP-NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKP 852

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G SWIEV   VH F S D+ HP+   IH +L+ L   M+  GYVPD  + LH V +  KE
Sbjct: 853 GQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKE 912

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           Q L +HSE+LAI +GL+K P  TPI + KNLRVCGDCH ATK+IS I KR+II RD+ RF
Sbjct: 913 QALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRF 972

Query: 558 HHFKDGTCSCGDYW 571
           HHFKDG CSCGD+W
Sbjct: 973 HHFKDGVCSCGDFW 986



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 210/396 (53%), Gaps = 21/396 (5%)

Query: 23  LKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           L D + +++ I     QPD+   N +++ +     + ++A   F  +  KD  SWN ++ 
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLIN-MYAKCGNTISAKQIFDDMREKDVYSWNLLLG 184

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELF----KVAP 128
           G+VQ     +A  L   M      P+K +  + +M++   +   +DK  EL+    K   
Sbjct: 185 GYVQHGLYEEAFKLHEQMVQDSVKPDKRT--FVSMLNACADARNVDKGRELYNLILKAGW 242

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
              +   TA+I+ ++K G +  A K+FD +PT++LVTW +MI G   +   +    L + 
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G++P+  +  S+L  C+H  +L+ GK+VH  + +     +    T ++SMY KCG 
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +EDA ++F  ++ ++VV+W AMI+G+AQHG+ ++A   F+KM + G++P+ +TF+++L A
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+    +  G Q  D ++ + G  +     T ++ +  + G L +A  + +K+  K    
Sbjct: 423 CSSPSALKRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVV 480

Query: 369 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNPANAA 402
            +  +++A   H++ D  LA F A+    + P ++ 
Sbjct: 481 AWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 194/408 (47%), Gaps = 48/408 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVS---------------- 40
           M  K   +WN +L G+  Q G  ++A +L +++ Q    PD  +                
Sbjct: 171 MREKDVYSWNLLLGGYV-QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK 229

Query: 41  ----YNIMLSC--------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
               YN++L                + +   D+  A   F  LP +D  +W +MI+G  +
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 83  KKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW------ 135
                +A +LF  M E+       A +S    C   +   +  KV      V W      
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA++S Y K G ++ A ++FD +  +N+V+W AMIAG+ ++   ++       MI  GI
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +  S+L  CS  S+L+ G+Q+   + ++    D    T L+SMY KCG L+DA +
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F +I +++VV WNAMI+ Y QH + + AL  F  +  EG+KP+S TF ++L  C  +  
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++LG ++   ++   G+ +       +V +    G L+ A +L   MP
Sbjct: 530 LELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 33/230 (14%)

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + +++L  +    I+    + S++L  C    +L  G++++  + KS +  D      LI
Sbjct: 93  EAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLI 152

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG+   A ++F +++ KDV +WN ++ GY QHG  E+A +L ++M  + +KPD  
Sbjct: 153 NMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKR 212

Query: 301 TFVALLLACNHAGLVDLGIQYFD---------------SMVN------DYGIAAK----- 334
           TFV++L AC  A  VD G + ++               +++N      D G A K     
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 335 PDH----YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
           P      +T M+  L R G+  +A +L ++M     +P    F +LL AC
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 22/138 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL------- 49
           M  +  V+WN+++AGF  Q GK + A + F  + +    PD +++  +L+          
Sbjct: 575 MPKRDLVSWNTIIAGFV-QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTE 633

Query: 50  ---LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
              L++    AAFD        D      +IS + +  ++  A  +F  +P+KN  SW++
Sbjct: 634 GRRLHALITEAAFDC-------DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTS 686

Query: 107 MISGYIECGQLDKAVELF 124
           MI+GY + G+  +A+ELF
Sbjct: 687 MIAGYAQHGRGKEALELF 704


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 361/614 (58%), Gaps = 49/614 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDF 61
           +  V+W +++AGFA Q G++ +A   F+K+ +  +    +    IL   +S   +     
Sbjct: 376 RNVVSWTAMIAGFA-QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 62  FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            Q   I+     D      ++S + +  ++  A  +F  + ++N V+W+AMI+ Y++  Q
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQ 494

Query: 117 LDKAVELFK------VAPVKSVVA----------------W-----------------TA 137
            D A+  F+      + P  S                   W                  A
Sbjct: 495 YDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNA 554

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S ++  G +  A+ LF++MP ++LV+WN +IAG+V++   +      +MM   GI+P+
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + + +L  C+   +L  G+++H L+ ++    D    T LISMY KCG +EDA ++F 
Sbjct: 615 KITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFH 674

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++ +K+V +W +MI+GYAQHG+G++AL LF +M+ EG+KPD ITFV  L AC HAGL++ 
Sbjct: 675 KLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEE 734

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G+ +F SM  ++ I  + +HY CMVDL GRAG L EAV+ I KM  +P   ++G LL AC
Sbjct: 735 GLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC 793

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           +VH  ++LAE AA     L+P N  G +V L+NIYAA   W +VA++R  M +  VVK P
Sbjct: 794 QVHLNVELAEKAAQKKLELDP-NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKP 852

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G SWIEV   VH F S D+ HP+   IH +L+ L   M+  GYVPD  + LH V +  KE
Sbjct: 853 GQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKE 912

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           Q L +HSE+LAI +GL+K P  TPI + KNLRVCGDCH ATK+IS I KR+II RD+ RF
Sbjct: 913 QALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRF 972

Query: 558 HHFKDGTCSCGDYW 571
           HHFKDG CSCGD+W
Sbjct: 973 HHFKDGVCSCGDFW 986



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 225/449 (50%), Gaps = 51/449 (11%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL------NSDDV 55
           ++K T   N+VL   +K  G+  +A ++ +++    +  Y    S +L       N  D 
Sbjct: 71  DIKDTQKANAVLNRLSKA-GQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDG 129

Query: 56  VAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
              ++  ++  ++ D   WNT+I+ + +  N   A+ +F  M EK+  SW+ ++ GY++ 
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 115 GQLDKAVELFK------VAPVKSV--------------------------VAW------- 135
           G  ++A +L +      V P K                              W       
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           TA+I+ ++K G +  A K+FD +PT++LVTW +MI G   +   +    L + M   G++
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +  S+L  C+H  +L+ GK+VH  + +     +    T ++SMY KCG +EDA ++
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  ++ ++VV+W AMI+G+AQHG+ ++A   F+KM + G++P+ +TF+++L AC+    +
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G Q  D ++ + G  +     T ++ +  + G L +A  + +K+  K     +  +++
Sbjct: 430 KRGQQIQDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMIT 487

Query: 376 ACRVHKRLD--LAEFAAMNLFNLNPANAA 402
           A   H++ D  LA F A+    + P ++ 
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSST 516



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 194/408 (47%), Gaps = 48/408 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVS---------------- 40
           M  K   +WN +L G+  Q G  ++A +L +++ Q    PD  +                
Sbjct: 171 MREKDVYSWNLLLGGYV-QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK 229

Query: 41  ----YNIMLSC--------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
               YN++L                + +   D+  A   F  LP +D  +W +MI+G  +
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 83  KKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW------ 135
                +A +LF  M E+       A +S    C   +   +  KV      V W      
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA++S Y K G ++ A ++FD +  +N+V+W AMIAG+ ++   ++       MI  GI
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +  S+L  CS  S+L+ G+Q+   + ++    D    T L+SMY KCG L+DA +
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHR 469

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F +I +++VV WNAMI+ Y QH + + AL  F  +  EG+KP+S TF ++L  C  +  
Sbjct: 470 VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++LG ++   ++   G+ +       +V +    G L+ A +L   MP
Sbjct: 530 LELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 160/336 (47%), Gaps = 33/336 (9%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           +  W  +I+ Y K G    A+++FD+M  K++ +WN ++ GYV++   E+  KL   M+ 
Sbjct: 145 IFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQ 204

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             ++P+  +  S+L  C+   ++  G++++ L+ K+    D    T LI+M+ KCGD+ D
Sbjct: 205 DSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGD 264

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F  +  +D+VTW +MI+G A+HG+ ++A  LF +M++EG++PD + FV+LL ACNH
Sbjct: 265 ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324

Query: 312 AGLVDLGIQYFDSM------------------------------VNDYGIAAKPDHYTCM 341
              ++ G +    M                              V D         +T M
Sbjct: 325 PEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 342 VDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
           +    + G++ EA     KM     +P    F ++L AC     L   +    ++     
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            +       L ++YA      D  R+   + + NVV
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVV 480



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 22/138 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL------- 49
           M  +  V+WN+++AGF  Q GK + A + F  + +    PD +++  +L+          
Sbjct: 575 MPKRDLVSWNTIIAGFV-QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTE 633

Query: 50  ---LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
              L++    AAFD        D      +IS + +  ++  A  +F  +P+KN  SW++
Sbjct: 634 GRRLHALITEAAFDC-------DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTS 686

Query: 107 MISGYIECGQLDKAVELF 124
           MI+GY + G+  +A+ELF
Sbjct: 687 MITGYAQHGRGKEALELF 704


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/591 (39%), Positives = 339/591 (57%), Gaps = 45/591 (7%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
           +DA+++ D++P  D +++  M+    +   DV AA   F+ + +K    WN MISG+V  
Sbjct: 214 RDARKVLDEMPDKDALTWTTMV-VGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHS 272

Query: 84  KNMAKARDLFLAM-------------------------------------------PEKN 100
             + +A +LF  M                                           PE  
Sbjct: 273 GMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAA 332

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
               +A+++ Y +CG +  A  +F     K VV+W  ++SGY++   +D A ++F+EMP 
Sbjct: 333 LPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           KN ++W  M++GYV   ++ED LKL   M    ++P   + +  +  C  L SL+ GKQ+
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQL 452

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  + +       +A   LI+MY +CG +++A  +FL +   D V+WNAMIS   QHG G
Sbjct: 453 HGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL LFD+M  EG+ PD I+F+ +L ACNH+GLVD G QYF+SM  D+GI    DHYT 
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTR 572

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           ++DLLGRAG++ EA DLIK MPF+P P+I+  +LS CR    ++L   AA  LF + P +
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH 632

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y+ L+N Y+A  +W D AR+R  M++  V K PG SWIE G  VH F  GD  HPE
Sbjct: 633 -DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPE 691

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              +++ L+ +  RM+  GYVPD +  LH +    KE +L  HSE+LA+ FGL+K+P G 
Sbjct: 692 AHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGA 751

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            + V KNLR+C DCH    ++S    REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 752 TVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 178/406 (43%), Gaps = 52/406 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           V   S++A +A   G+L  A   FD +PQ   D V +N ++S     S    A   F   
Sbjct: 89  VAATSLVAAYAAA-GRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 65  LPI----KDTASWNTMISGF-----VQKKNMAKARDLFLAMPEKNSVSWS-AMISGYIEC 114
           L       D  S+  ++S       +  ++ A+ +   L       +S S A+++ Y++C
Sbjct: 148 LASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKC 207

Query: 115 GQLDKAVELFKV---APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
             L+   +  KV    P K  + WT M+ GY++ G V  A  +F+E+  K  V WNAMI+
Sbjct: 208 EALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMIS 267

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLC 230
           GYV +    +  +L R M+   +  +  + +SVL  C++      GK VH Q+    P  
Sbjct: 268 GYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNF 327

Query: 231 KDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA------------------ 269
               AL     L+++Y KCG++  A ++F  ++ KDVV+WN                   
Sbjct: 328 VPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 270 -------------MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
                        M+SGY   G  E AL+LF++M+ E +KP   T+   + AC   G + 
Sbjct: 388 EEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLK 447

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            G Q    +V   G          ++ +  R G + EA  +   MP
Sbjct: 448 HGKQLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 143/320 (44%), Gaps = 33/320 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M  K  V+WN++L+G+  +   L  A E+F+++P  + +S+ +M+S  +    S+D   A
Sbjct: 359 MKSKDVVSWNTILSGYV-ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSED---A 414

Query: 59  FDFFQRLPIKDTA----SWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMIS 109
              F R+  +D      ++   IS   +  ++   + L      L     NS   +A+I+
Sbjct: 415 LKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAG-NALIT 473

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VT 165
            Y  CG + +A  +F V P    V+W AMIS   + G    A +LFD M  + +    ++
Sbjct: 474 MYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 166 WNAMIAGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQ 222
           +  ++     +   ++G +    M    GI P     + +  LLG     + ++G +   
Sbjct: 534 FLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLG----RAGRIG-EARD 588

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLE----DACKLFLEIQRKDVVTWNAMISGYAQHG 278
           L+   P     +    ++S     GD+E     A +LF    + D  T+  + + Y+  G
Sbjct: 589 LIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD-GTYILLSNTYSAAG 647

Query: 279 KGEKALRLFDKMKDEGMKPD 298
           +   A R+   M+D G+K +
Sbjct: 648 RWVDAARVRKLMRDRGVKKE 667


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/559 (43%), Positives = 339/559 (60%), Gaps = 19/559 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ LFDK+ + DVVS++ M+         +   + F QR       SW  MI+G+
Sbjct: 158 GSLVSARLLFDKMSERDVVSWSTMIRAY------ITLFYGFSQR----SIVSWTAMIAGY 207

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWS-AMISGYIECG-----QLDKAVE--LFKVAPVKSV 132
           ++  ++ +   LF+ M E+N       M+S  I CG     QL K +   + +     S+
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA++  Y K G++  A  +FD M  K+++TW AMI+ Y + +  +   +L   M   
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+RPN  ++ S+L  C+   +L +GK  H  + K  +  D    T LI MY KCGD+  A
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +LF E   +D+ TWN M++GY  HG GEKAL+LF +M+  G+KP+ ITF+  L AC+HA
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV  G   F+ M++D+G+  K +HY CMVDLLGRAG L EA  +I+ MP  P  AI+G 
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           +L+AC++HK  ++ E AA  L  L P N  G  V ++NIYAA  +W+DVA +R ++K+  
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQN-CGYKVLMSNIYAAANRWNDVAGMRKAVKDTG 566

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PG S IEV  +VH+F+ GD  HP +  I E L E+ K++K AGY+PD    LH + 
Sbjct: 567 IKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNID 626

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE KE  L +HSEKLA+AFGLI    GTPIRV KNLR+C DCH  TK +S I KR IIVR
Sbjct: 627 EEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVR 686

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF++G+CSCG YW
Sbjct: 687 DRNRFHHFREGSCSCGGYW 705



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 41/294 (13%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           + D    N ++  + +  ++  AR LF  M E++ VSWS MI  YI          LF  
Sbjct: 141 VSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYG 191

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
              +S+V+WTAMI+GY++   ++  E+LF  M  +N+                       
Sbjct: 192 FSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVF---------------------- 229

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
                    PN  ++ S+++ C  + ++QLGK++H  + ++         T L+ MY KC
Sbjct: 230 ---------PNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKC 280

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++  A  +F  ++ KDV+TW AMIS YAQ    + A +LF +M+D G++P+ +T V+LL
Sbjct: 281 GEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLL 340

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
             C   G +D+G ++F + ++  G+       T ++D+  + G +  A  L  +
Sbjct: 341 SLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE 393



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 25/206 (12%)

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L     M  L I  ++  + SVL  CS +S  ++GK++H    K+ L  D   +  L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWN----------------------AMISGYAQHGK 279
           MY +CG L  A  LF ++  +DVV+W+                      AMI+GY +   
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHY 338
            E+  RLF +M +E + P+ IT ++L+++C   G V LG +    ++ N +G++      
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA-- 270

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFK 364
           T +VD+ G+ G++  A  +   M  K
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNK 296


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/653 (38%), Positives = 367/653 (56%), Gaps = 84/653 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCIL------ 49
           M  +  V+W +++   A+ R KL +A EL++++ Q    P+ V++ +++ SC        
Sbjct: 218 MTERNVVSWTAIIQANAQHR-KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNR 276

Query: 50  ------------LNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                       L +D +VA               A + F R+  +D  SW+ MI+G+ Q
Sbjct: 277 GRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ 336

Query: 83  -----KKNMAKARDLFLAMPEK----NSVSW----------------------------- 104
                K+++ +   L   M  +    N V++                             
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396

Query: 105 ------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
                 +A+ + Y +CG + +A ++F     K+VVAWT+ +S Y+K G +  AEK+F EM
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           PT+N+V+WN MIAGY +N       +LL  M   G +P+  ++ ++L  C  L+ L+ GK
Sbjct: 457 PTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGK 516

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
            VH    K  L  DT   T LI MY KCG + +A  +F ++  +D V WNAM++GY QHG
Sbjct: 517 LVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHG 576

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
            G +A+ LF +M  E + P+ IT  A++ AC+ AGLV  G + F  M  D+ +  +  HY
Sbjct: 577 DGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHY 636

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            CMVDLLGRAG+L EA + I+ MP +P  +++  LL AC+ H  + LAE AA ++  L P
Sbjct: 637 GCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEP 696

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
           + A+  Y+ L+NIYA   +WDD  ++R  M +  + K  G S IE+   +H F + D  H
Sbjct: 697 SYAS-VYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAH 755

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           PE+ +IH +L+ L K MK AGY PD+ F LH V +  KE+ L  HSEKLAIA+GL+K P 
Sbjct: 756 PEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPS 815

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GTPIR+ KNLRVCGDCH ATK+IS I KREI+ RD  RFH+F +GTCSCGD+W
Sbjct: 816 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 198/378 (52%), Gaps = 23/378 (6%)

Query: 7   VNWNS---VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAF 59
           VN N+   V+   AK R + +D + +  ++ +  V   +I L   L+N     +DV +A 
Sbjct: 54  VNSNTYGCVIEHCAKAR-RFEDGKMVHKQLDELGV-EIDIYLGNSLINFYSKFEDVASAE 111

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG 115
             F+R+ ++D  +W++MI+ +    + AKA D F  M     E N +++ +++       
Sbjct: 112 QVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYS 171

Query: 116 QLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            L+K  ++  +         V   TA+I+ Y K G++ +A ++F +M  +N+V+W A+I 
Sbjct: 172 ILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQ 231

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
              ++    +  +L   M+  GI PNA +  S+L  C+   +L  G+++H  + +  L  
Sbjct: 232 ANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET 291

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK-----ALRL 286
           D      LI+MYCKC  +++A ++F  + ++DV++W+AMI+GYAQ G  +K       +L
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQL 351

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            ++M+ EG+ P+ +TF+++L AC   G ++ G Q   + ++  G        T + ++  
Sbjct: 352 LERMRREGVFPNKVTFMSILRACTAHGALEQGRQ-IHAELSKVGFELDRSLQTAIFNMYA 410

Query: 347 RAGKLVEAVDLIKKMPFK 364
           + G + EA  +  KM  K
Sbjct: 411 KCGSIYEAEQVFSKMANK 428



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 209/498 (41%), Gaps = 128/498 (25%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M ++  V W+S++A +A      K A + F+++   ++    I    IL   ++  +  +
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAK-AFDTFERMTDANIEPNRITFLSILKACNNY-SILE 174

Query: 61  FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +++           D A    +I+ + +   ++ A ++F  M E+N VSW+A+I    
Sbjct: 175 KGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234

Query: 113 ECGQLDKAVELFK------VAP---------------------------------VKSVV 133
           +  +L++A EL++      ++P                                    ++
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI 294

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE-----DGLKLLRM 188
              A+I+ Y K   V  A ++FD M  +++++W+AMIAGY ++ + +     +  +LL  
Sbjct: 295 VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLER 354

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC---- 244
           M   G+ PN  +  S+L  C+   +L+ G+Q+H  + K     D +  T + +MY     
Sbjct: 355 MRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGS 414

Query: 245 ---------------------------KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
                                      KCGDL  A K+F E+  ++VV+WN MI+GYAQ+
Sbjct: 415 IYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQN 474

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ------ 320
           G   K   L   MK EG +PD +T + +L AC            HA  V LG++      
Sbjct: 475 GDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVA 534

Query: 321 ------------------YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM- 361
                              FD M N   +A     +  M+   G+ G  +EAVDL K+M 
Sbjct: 535 TSLIGMYSKCGQVAEARTVFDKMSNRDTVA-----WNAMLAGYGQHGDGLEAVDLFKRML 589

Query: 362 --PFKPQPAIFGTLLSAC 377
                P       ++SAC
Sbjct: 590 KERVSPNEITLTAVISAC 607



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 109/206 (52%), Gaps = 2/206 (0%)

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + ++LL ++   G+  N+++   V+  C+     + GK VH+ + +  +  D      LI
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           + Y K  D+  A ++F  +  +DVVTW++MI+ YA +    KA   F++M D  ++P+ I
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+++L ACN+  +++ G +   ++V   G+       T ++ +  + G++  A ++  K
Sbjct: 159 TFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLA 386
           M  +     +  ++ A   H++L+ A
Sbjct: 218 MT-ERNVVSWTAIIQANAQHRKLNEA 242


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 353/625 (56%), Gaps = 76/625 (12%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLS----------------------CILLNSD---DVV 56
           +++DA+++FD++P+ D + +N M+S                      C  L++    D++
Sbjct: 169 RVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDIL 228

Query: 57  AAFDFFQRLPI----------KDTASWNTMISGFVQKKN----MAKARDLFLAMPEKNSV 102
            A    Q L +              S + +++GF+   +    +  A  LF      + V
Sbjct: 229 PAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIV 288

Query: 103 SWSAMISGYIECGQLDKAVELFK----------------VAPVKS--------------- 131
           +++AMI GY   G+ + ++ LFK                + PV                 
Sbjct: 289 AYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKS 348

Query: 132 -----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                    TA+ + Y K  +++ A KLFDE P K+L +WNAMI+GY +N   ED + L 
Sbjct: 349 NFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLF 408

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R M      PN  +++ +L  C+ L +L LGK VH LV  +         T LI MY KC
Sbjct: 409 REMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC 468

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G + +A +LF  + +K+ VTWN MISGY  HG G++AL +F +M + G+ P  +TF+ +L
Sbjct: 469 GSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVL 528

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+HAGLV  G + F+SM++ YG      HY C+VD+LGRAG L  A+  I+ MP +P 
Sbjct: 529 YACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPG 588

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
           P+++ TLL ACR+HK  +LA   +  LF L+P N  G +V L+NI++A + +   A +R 
Sbjct: 589 PSVWETLLGACRIHKDTNLARTVSEKLFELDPDN-VGYHVLLSNIHSADRNYPQAATVRQ 647

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           + K+  + K PGY+ IE+G   H F SGD+ HP++ +IHEKL++LE +M+ AGY P+ E 
Sbjct: 648 TAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETEL 707

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
           ALH V EE +E ++  HSE+LAIAFGLI    GT IR+ KNLRVC DCH ATK IS I +
Sbjct: 708 ALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITE 767

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R I+VRD  RFHHFKDG CSCGDYW
Sbjct: 768 RVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 168/353 (47%), Gaps = 23/353 (6%)

Query: 46  SCILLNSDDVVAAFDF---------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           S +LL S+ V   F F         F R+P KDT  WNTMISG+ + +   ++  +F  +
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 97  PEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGK 147
             +     ++ +   ++    E  +L   +++  +A      +     T  IS Y K GK
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           + +A  LF E    ++V +NAMI GY  N   E  L L + ++  G +  +S+L S++  
Sbjct: 272 IKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPV 331

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
             H   L L   +H    KS     T+  T L ++Y K  ++E A KLF E   K + +W
Sbjct: 332 SGH---LMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSW 388

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NAMISGY Q+G  E A+ LF +M++    P+ +T   +L AC   G + LG ++   +V 
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVR 447

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
                +     T ++ +  + G + EA  L   MP K     + T++S   +H
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLH 499



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 149/376 (39%), Gaps = 85/376 (22%)

Query: 12  VLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
           VL GF     + GK+K A  LF +  +PD+V+YN M+     N +  + +   F+ L   
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETEL-SLSLFKELMLS 316

Query: 66  -------------PIKDTASWNTMISGFVQKKN--------------------MAKARDL 92
                        P+         I G+  K N                    +  AR L
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA--------PV--------------- 129
           F   PEK+  SW+AMISGY + G  + A+ LF+          PV               
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGAL 436

Query: 130 ----------------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                            S+   TA+I  Y K G +  A +LFD MP KN VTWN MI+GY
Sbjct: 437 SLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGY 496

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKD 232
             +   ++ L +   M+  GI P   +   VL  CSH   ++ G ++ + ++ +      
Sbjct: 497 GLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPS 556

Query: 233 TTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                 ++ +  + G L+ A +    + IQ    V W  ++     H     A  + +K+
Sbjct: 557 VKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSV-WETLLGACRIHKDTNLARTVSEKL 615

Query: 291 KDEGMKPDSITFVALL 306
            +  + PD++ +  LL
Sbjct: 616 FE--LDPDNVGYHVLL 629



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q H  +       D + LT L       G +  A  +FL +QR DV  +N ++ G++ + 
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 279 KGEKALRLFDKM-KDEGMKPDSITF 302
               +L +F  + K   +KP+S T+
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTY 122


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/536 (42%), Positives = 327/536 (61%), Gaps = 6/536 (1%)

Query: 41  YNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           Y+++L   LL+      D+  A   F  +P +D  + N MIS   +   + +AR+LF  M
Sbjct: 43  YDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM 102

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
            E+NS SW++MI+ Y + G ++ A  +F   PVK VV+W A+I GY K  ++  A++LF 
Sbjct: 103 TERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFL 162

Query: 157 EMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
            M + +N VTWN MI+ YV+       + + + M    ++P   ++ S+L  C+HL +L 
Sbjct: 163 LMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALD 222

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           +G+ +H  +    L  D      LI MYCKCG LE A  +F  + RK++  WN++I G  
Sbjct: 223 MGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLG 282

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            +G+GE+A+  F  M+ EG+KPD +TFV +L  C+H+GL+  G +YF  M+  YG+    
Sbjct: 283 MNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGV 342

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           +HY CMVDLLGRAG L EA++LI+ MP KP   + G+LL AC++HK   L E     L  
Sbjct: 343 EHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLE 402

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L+P +  G YV L+N+YA++ +WDDV   R  M +  V K PG S IEV  +VHEF +GD
Sbjct: 403 LDPCD-GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGD 461

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
             HP+   I+  L E+ K +K  G+VP+    LH + EE KE  + +HSE++A+AFGL+ 
Sbjct: 462 TSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMS 521

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            P G  IRV KNLR C DCH A K IS   KREIIVRD  RFHHF++G+CSC DYW
Sbjct: 522 TPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 153/360 (42%), Gaps = 75/360 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V  N++++  +K  G +++A+ LFD + + +  S+N M++C      D+ +A  
Sbjct: 71  MPRRDVVANNAMISALSKH-GYVEEARNLFDNMTERNSCSWNSMITC-YCKLGDINSARL 128

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDK 119
            F   P+KD  SWN +I G+ + K +  A++LFL M   +NSV+W+ MIS Y++CG+   
Sbjct: 129 MFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGT 188

Query: 120 AVELFK------VAPVK---------------------------------SVVAWTAMIS 140
           A+ +F+      V P +                                  VV   A+I 
Sbjct: 189 AISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 248

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G ++ A  +F  +  KN+  WN++I G   N   E+ +    +M   GI+P+  +
Sbjct: 249 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 308

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
              +L GCSH   L  G    Q  F   L      L P +  Y                 
Sbjct: 309 FVGILSGCSHSGLLSAG----QRYFSEML--GVYGLEPGVEHY----------------- 345

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
                    M+    + G  ++AL L   M    MKP+S+   +LL AC       LG Q
Sbjct: 346 -------GCMVDLLGRAGYLKEALELIRAMP---MKPNSMVLGSLLRACQIHKDTKLGEQ 395



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 165/381 (43%), Gaps = 53/381 (13%)

Query: 96  MPEKNSVSW---SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAE 152
           +P K S S    S  ISG  + G+     ++ K+     ++  T ++  Y K G +  A+
Sbjct: 7   LPSKTSFSLILRSCAISGEAQLGEAFHC-QIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           ++F  MP +++V  NAMI+   ++ + E+   L   M       N+ S +S++     L 
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITCYCKLG 121

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMI 271
            +   +    L+F     KD  +   +I  YCK   L  A +LFL +   ++ VTWN MI
Sbjct: 122 DINSAR----LMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMI 177

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           S Y Q G+   A+ +F +M+ E +KP  +T V+LL AC H G +D+G ++    +    +
Sbjct: 178 SAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRL 236

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVD----------------------------------L 357
                    ++D+  + G L  A+D                                  +
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 296

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAM-NLFNLNPA-NAAGCYVQLANIYA 413
           ++K   KP    F  +LS C     L   +  F+ M  ++ L P     GC V L     
Sbjct: 297 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 356

Query: 414 AMKKWDDVARIRLSMKENNVV 434
            +K+  ++ R  + MK N++V
Sbjct: 357 YLKEALELIRA-MPMKPNSMV 376



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 34/225 (15%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P+ +S S +L  C+     QLG+  H  + K     D    T L+  Y K GDL+ A 
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-----------MKPDSITF 302
           ++F+ + R+DVV  NAMIS  ++HG  E+A  LFD M +              K   I  
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINS 125

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDY----------------GIAAKPDHYTCMVDLLG 346
             L+  CN        +  ++++++ Y                G A     +  M+    
Sbjct: 126 ARLMFDCNPVK----DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYV 181

Query: 347 RAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEF 388
           + G+   A+ + ++M     KP      +LLSAC     LD+ E+
Sbjct: 182 QCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 226


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 340/557 (61%), Gaps = 14/557 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSD-----DVVAAFDFFQRLPIKDTASWNTMISGF 80
           A+ +FDK+ + DVVS++ M+  +  N +     +++   +F Q  P     +  +M++ F
Sbjct: 178 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRP--SEVAMVSMVNLF 235

Query: 81  VQKKNM--AKARDLFLAMPEKNS----VSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
               NM   KA   ++     N      + +A++  Y +CG L  A +LF     K+VV+
Sbjct: 236 ADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 295

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           WTAMI+G ++  +++ A  LFD    ++++ W AM++ Y + +  +    L   M   G+
Sbjct: 296 WTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV 355

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP   ++ S+L  C+   +L LGK VH  + K  +  D    T L+ MY KCGD+  A +
Sbjct: 356 RPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 415

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF+E   +D+  WNA+I+G+A HG GE+AL +F +M+ +G+KP+ ITF+ LL AC+HAGL
Sbjct: 416 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 475

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V  G + F+ MV+ +G+  + +HY CMVDLLGRAG L EA ++IK MP KP   ++G L+
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           +ACR+HK   L E AA  L  + P N  G  V ++NIYAA  +W D A +R +MK   + 
Sbjct: 536 AACRLHKNPQLGELAATQLLEIEPEN-CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMK 594

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG+S IEV   VHEF  GD+ HP++  I+E L E+ +++  AGYVPD    L  + EE
Sbjct: 595 KEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEE 654

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  L +HSEKLA+AFGLI     TPIR+ KNLRVC DCH ATK +S I  R IIVRD 
Sbjct: 655 EKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDR 714

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHF++G CSCGDYW
Sbjct: 715 NRFHHFREGYCSCGDYW 731



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 49/344 (14%)

Query: 59  FDFFQRLPIKD-------TASWNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSA 106
           F    ++P+ D       +A WN +I+ + ++     A +++  + +      N ++ S 
Sbjct: 71  FHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSV 130

Query: 107 MIS-GYIECGQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           + + G +   QL K +  F  K    + V    A++  Y +   V+ A  +FD+M  +++
Sbjct: 131 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 190

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W+ MI     N   +  L+L+R M  + +RP+  ++ S++   +  +++++GK +H  
Sbjct: 191 VSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 250

Query: 224 VFKSPLCKD--TTALTPLISMYCKCGD-------------------------------LE 250
           V ++   +       T L+ MY KCG                                LE
Sbjct: 251 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 310

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A  LF   Q +DV+ W AM+S YAQ    ++A  LFD+M+  G++P  +T V+LL  C 
Sbjct: 311 EARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCA 370

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            AG +DLG ++  S ++   +       T +VD+  + G +  A
Sbjct: 371 VAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 413



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 23/291 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNS-DDVVAA 58
           M V TT    ++L  +AK  G L  A++LF+ + Q  VVS+  M++ CI  N  ++  A 
Sbjct: 260 MGVPTTT---ALLDMYAKC-GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARAL 315

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYI 112
           FD  Q    +D   W  M+S + Q   + +A +LF  M      P K  V+  +++S   
Sbjct: 316 FDSTQN---RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK--VTIVSLLSLCA 370

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             G LD    +      + V    +  TA++  Y K G ++ A +LF E  ++++  WNA
Sbjct: 371 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 430

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKS 227
           +I G+  + + E+ L +   M   G++PN  +   +L  CSH   +  GK++  ++V   
Sbjct: 431 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 490

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
            L         ++ +  + G L++A ++   +  K + + W A+++    H
Sbjct: 491 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 541


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/522 (45%), Positives = 326/522 (62%), Gaps = 13/522 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F  + ++D  +WN++IS   Q   +A A +LF  M E     + ++  ++ S   +CG  
Sbjct: 226 FGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDE 285

Query: 118 --DKAVELF---KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
              K+V  +   +   V  ++A  AM+  Y K  K+D A+K+FD +P +++V+WN +I G
Sbjct: 286 LGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITG 345

Query: 173 YVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           Y++N  A + +++   M    G++P   +  SVL   S+L  LQ G ++H L  K+ L  
Sbjct: 346 YMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNL 405

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D    T LI +Y KCG L +A  LF  + R+    WNA+I+G   HG G KAL LF +M+
Sbjct: 406 DVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQ 465

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            E +KPD +TFV+LL AC+HAGLVD G  +FD M   YGI     HYTCMVD+LGRAG+L
Sbjct: 466 QEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQL 525

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA + I+ MP KP  A++G LL ACR+H  +++ + A+ NLF L+P N  G YV ++N+
Sbjct: 526 DEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN-VGYYVLMSNM 584

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV--HPELVSIHEKLK 469
           YA + KWD V  +R  ++  N+ K PG+S +EV   V  F SG +   HP+   I   L 
Sbjct: 585 YAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLH 644

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L  +MK AGYVPD  F L  V E+ KEQ+L  HSE+LAIAFG+I  P GTP+ ++KNLR
Sbjct: 645 DLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLR 704

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH ATKYIS I +REIIVRD  RFHHFKDG CSCGD+W
Sbjct: 705 VCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V A  +++  Y++FG+V  A ++FDEMP +++  WNAM++G   N+ A D + LL  M+
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G G+  +A +LSSVL  C  L    L   +H    K  L  +      LI +Y K G L 
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLT 220

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A  +F  +  +D+VTWN++IS   Q GK   A+ LF  M + G+ PD +T V+L  A  
Sbjct: 221 EAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVA 280

Query: 311 HAGLVDLGIQYFDSMVNDYG------IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             G  +LG +     V   G      IA        MVD+  +  K+  A  +   +P
Sbjct: 281 QCG-DELGAKSVHCYVRRRGWDVGDIIAGN-----AMVDMYAKMSKIDAAQKVFDNLP 332



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 183/392 (46%), Gaps = 50/392 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ +A  +FD++P+ DV ++N MLS +  N+     A     R+  +  A     +S  
Sbjct: 116 GRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTR-AADAVTLLGRMVGEGVAGDAVTLSSV 174

Query: 81  VQKKNMAKARDLFLAM---PEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSV 132
           +    +   R L L M     K+ +S      +A+I  Y + G L +A  +F    ++ +
Sbjct: 175 LPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDL 234

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V W ++IS   + GKV  A +LF                G +E+    D L L+      
Sbjct: 235 VTWNSIISANEQGGKVAAAVELFH---------------GMMESGVCPDVLTLV------ 273

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLE 250
                  SL+S +  C      +LG K VH  V +      D  A   ++ MY K   ++
Sbjct: 274 -------SLASAVAQCGD----ELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKID 322

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 309
            A K+F  +  +DVV+WN +I+GY Q+G   +A+R+++ M + EG+KP   TFV++L A 
Sbjct: 323 AAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAY 382

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQ 366
           ++ G +  G++   ++    G+       TC++DL  + GKLVEA+ L + MP +   P 
Sbjct: 383 SYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPW 441

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            AI   L      H    L+ F+ M    + P
Sbjct: 442 NAIIAGL--GVHGHGAKALSLFSQMQQEEIKP 471



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 142/335 (42%), Gaps = 59/335 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDD-- 54
           M ++  V WNS+++   +Q GK+  A ELF  + +    PDV++   + S +    D+  
Sbjct: 229 MALRDLVTWNSIISA-NEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELG 287

Query: 55  ---------------------------------VVAAFDFFQRLPIKDTASWNTMISGFV 81
                                            + AA   F  LP +D  SWNT+I+G++
Sbjct: 288 AKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYM 347

Query: 82  QKKNMAKARDLFLAMPEKNSV-----SWSAMISGYIECGQLDKAVELFKVAPVKS----- 131
           Q     +A  ++  M     +     ++ +++  Y   G L + + +  ++ +K+     
Sbjct: 348 QNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALS-IKTGLNLD 406

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   T +I  Y K GK+  A  LF+ MP ++   WNA+IAG   +      L L   M  
Sbjct: 407 VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQ 466

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQ---VHQLVFK-SPLCKDTTALTPLISMYCKCG 247
             I+P+  +  S+L  CSH   +  G+    + Q V+   P+ K  T    ++ M  + G
Sbjct: 467 EEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTC---MVDMLGRAG 523

Query: 248 DLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGE 281
            L++A +    +  K D   W A++     HG  E
Sbjct: 524 QLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVE 558


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/618 (39%), Positives = 364/618 (58%), Gaps = 62/618 (10%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL----------LNS 52
            + WN+++ G A + G  ++A E++ ++ +    P+ ++Y I+L+  +          ++S
Sbjct: 412  IAWNTMIGGLA-EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHS 470

Query: 53   DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V   F F       D +  N +IS + +  ++  AR LF  M  K+ +SW+AMI G  
Sbjct: 471  RVVKDGFMF-------DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLA 523

Query: 113  ECGQLDKAVELFK---VAPVK-SVVAWTAMISG--------------------------- 141
            + G   +A+ +F+    A +K + V +T++++                            
Sbjct: 524  KSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH 583

Query: 142  --------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
                    Y   G V  A ++FD M  +++V +NAMI GY  ++  ++ LKL   +   G
Sbjct: 584  VANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG 643

Query: 194  IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            ++P+  +  ++L  C++  SL+  K++H LV K     DT+    L+S Y KCG   DA 
Sbjct: 644  LKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDAL 703

Query: 254  KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
             +F ++ +++V++WNA+I G AQHG+G+  L+LF++MK EG+KPD +TFV+LL AC+HAG
Sbjct: 704  LVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAG 763

Query: 314  LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            L++ G +YF SM  D+GI    +HY CMVDLLGRAG+L E   LIK MPF+    I+G L
Sbjct: 764  LLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGAL 823

Query: 374  LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
            L ACR+H  + +AE AA +   L+P NAA  YV L+++YAA   WD  A++R  M++  V
Sbjct: 824  LGACRIHGNVPVAERAAESSLKLDPDNAA-VYVALSHMYAAAGMWDSAAKLRKLMEQRGV 882

Query: 434  VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
             K PG SWIEVG  +H F + DR HPE   I+ +L +L   MK+ GYVPD    +H V E
Sbjct: 883  TKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDE 942

Query: 494  EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
              KE  +  HSE+LAIA+GLI    GTPIR+FKNLRVC DCH ATK+I+ I  REI+ RD
Sbjct: 943  GEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARD 1002

Query: 554  TTRFHHFKDGTCSCGDYW 571
              RFHHFKDG CSCGDYW
Sbjct: 1003 VNRFHHFKDGVCSCGDYW 1020



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 217/446 (48%), Gaps = 51/446 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI-------- 48
           M  K+ V+W  ++ G+A   G  + A E+F K+ Q    P+ ++Y  +L+          
Sbjct: 305 METKSVVSWTIIIGGYADC-GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 49  -------LLN----SDDVVAAF---------------DFFQRLPIKDTASWNTMISGFVQ 82
                  +LN    SD  V                    F++L  +D  +WNTMI G  +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVA 134
             N  +A +++  M  +    N +++  +++  +    L    E+     K   +  +  
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+IS Y + G +  A  LF++M  K++++W AMI G  ++    + L + + M   G+
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +PN  + +S+L  CS  ++L  G+++HQ V ++ L  D      L++MY  CG ++DA +
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  + ++D+V +NAMI GYA H  G++AL+LFD++++EG+KPD +T++ +L AC ++G 
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           ++   +    ++ D G  +       +V    + G   +A+ +  KM  K     +  ++
Sbjct: 664 LEWAKEIHSLVLKD-GYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAII 721

Query: 375 SACRVHKRLD--LAEFAAMNLFNLNP 398
             C  H R    L  F  M +  + P
Sbjct: 722 GGCAQHGRGQDVLQLFERMKMEGIKP 747



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 196/405 (48%), Gaps = 50/405 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T  +WN+++ G+  Q G +++A +L  ++ Q  + +     +  LL+S    +A +  +
Sbjct: 207 RTVHSWNAMVVGYV-QYGYIEEALKLLREMQQHGL-ALGRATTMRLLSSCKSPSALECGR 264

Query: 64  RLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
            + ++        D    N +++ + +  ++ +AR++F  M  K+ VSW+ +I GY +CG
Sbjct: 265 EIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCG 324

Query: 116 QLDKAVELFKVAPVKSVV-------------------AW--------------------T 136
             + A E+F+    + VV                    W                    T
Sbjct: 325 HSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGT 384

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A++  Y K G      ++F+++  ++L+ WN MI G  E    E+  ++   M   G+ P
Sbjct: 385 ALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMP 444

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  +   +L  C + ++L  G+++H  V K     D +    LISMY +CG ++DA  LF
Sbjct: 445 NKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLF 504

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            ++ RKD+++W AMI G A+ G G +AL +F  M+  G+KP+ +T+ ++L AC+    +D
Sbjct: 505 NKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALD 564

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            G +    ++ + G+A        +V++    G + +A  +  +M
Sbjct: 565 WGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 164/368 (44%), Gaps = 84/368 (22%)

Query: 58  AFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMIS 109
           A D  Q L  +    ++  +  M+   ++ K++   R++   + +  +V    + +A+I+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 110 GYIECGQLDKAVELFKV--APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            YI+CG +++A +++       ++V +W AM+ GY+++G +                   
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYI------------------- 225

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
                       E+ LKLLR M   G+    ++   +L  C   S+L+ G+++H    K+
Sbjct: 226 ------------EEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKA 273

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  D      +++MY KCG + +A ++F +++ K VV+W  +I GYA  G  E A  +F
Sbjct: 274 RLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIF 333

Query: 288 DKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG------------------ 318
            KM+ EG+ P+ IT++ +L A +           H+ +++ G                  
Sbjct: 334 QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKC 393

Query: 319 ------IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAI 369
                  Q F+ +VN   IA     +  M+  L   G   EA ++  +M  +   P    
Sbjct: 394 GSYKDCRQVFEKLVNRDLIA-----WNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKIT 448

Query: 370 FGTLLSAC 377
           +  LL+AC
Sbjct: 449 YVILLNAC 456


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/590 (39%), Positives = 339/590 (57%), Gaps = 45/590 (7%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+++ D++P  D +++  M+    +   DV AA   F+ +  K    WN MISG+VQ  
Sbjct: 221 DARKVLDEMPDKDDLTWTTMV-VGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSG 279

Query: 85  NMAKARDLFLAM-------------------------------------------PEKNS 101
             A A +LF  M                                           PE   
Sbjct: 280 MCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAAL 339

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
              +A+++ Y + G++  A  +F    +K VV+W  ++SGY+  G +D A ++F  MP K
Sbjct: 340 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK 399

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N ++W  M++GYV    +ED LKL   M    ++P   + +  +  C  L +L+ G+Q+H
Sbjct: 400 NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 459

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             + +       +A   L++MY KCG + DA  +FL +   D V+WNAMIS   QHG G 
Sbjct: 460 AHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR 519

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +AL LFD+M  EG+ PD I+F+ +L ACNHAGLVD G  YF+SM  D+GI+   DHY  +
Sbjct: 520 EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL 579

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           +DLLGR+G++ EA DLIK MPF+P P+I+  +LS CR +  ++   +AA  LF + P + 
Sbjct: 580 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH- 638

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 461
            G Y+ L+N Y+A  +W D AR+R  M++  V K PG SWIEVG+ +H F  GD  HPE 
Sbjct: 639 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 698

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             +++ L+ +  RM+  GYVPD +F LH +    KE +L  HSEKLA+ FGL+K+P G  
Sbjct: 699 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 758

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + V KNLR+CGDCH A  ++S    REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 759 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 198/454 (43%), Gaps = 84/454 (18%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           V   S++A  A   G+L+DA   FD +P  + D V +N M+S     S    A   F   
Sbjct: 95  VAATSLVAAHAAA-GRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 153

Query: 65  LPI----KDTASWNTMISGFVQKKNMAKAR--DLFLAMPEKNSVS----WSAMISGYIEC 114
           L       D  S+  +IS   Q  N+A      L  ++ +  + +     +A+I+ Y++C
Sbjct: 154 LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC 213

Query: 115 GQLDKAVELFKV---APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
              + + +  KV    P K  + WT M+ GY++ G V+ A  +F+E+  K  V WNAMI+
Sbjct: 214 DTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS 273

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLC 230
           GYV++    D  +L R M+   +  +  + +SVL  C++      GK VH Q++   P  
Sbjct: 274 GYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 333

Query: 231 KDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA------------------ 269
               AL     L+++Y K G +  A ++F  +  KDVV+WN                   
Sbjct: 334 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVF 393

Query: 270 -------------MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN------ 310
                        M+SGY   G  E AL+LF++M+ E +KP   T+   + AC       
Sbjct: 394 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALK 453

Query: 311 -----HAGLVDLGIQYFDS-------------MVNDYGIA--AKPD----HYTCMVDLLG 346
                HA LV  G +  +S              VND  +     P+     +  M+  LG
Sbjct: 454 HGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALG 513

Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
           + G   EA++L  +M      P    F T+L+AC
Sbjct: 514 QHGHGREALELFDQMVAEGIDPDRISFLTILTAC 547



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 125/301 (41%), Gaps = 44/301 (14%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLV 164
           +I  Y     L     LF+  P    VA T++++ +   G++  A   FD +P   ++ V
Sbjct: 69  LIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTV 128

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGK--QVH 221
             NAM++ +   S A   + +   ++G G +RP+  S ++++     + +L      Q+H
Sbjct: 129 LHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLH 188

Query: 222 QLVFKSPLCKDTTALTPLISMYCKC----------------------------------G 247
             V KS      +    LI++Y KC                                  G
Sbjct: 189 CSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRG 248

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           D+  A  +F E+  K  V WNAMISGY Q G    A  LF +M  E +  D  TF ++L 
Sbjct: 249 DVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLS 308

Query: 308 ACNHAGLVDLGIQYFDSMV----NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           AC +AG    G      ++    N    AA P +   +V L  + GK+V A  +   M  
Sbjct: 309 ACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN-NALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 364 K 364
           K
Sbjct: 368 K 368



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 31/317 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           MN+K  V+WN++L+G+    G L  A E+F  +P  + +S+ +M+S  +    S+D   A
Sbjct: 365 MNLKDVVSWNTILSGYIDS-GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED---A 420

Query: 59  FDFFQRLPIKDTASWNTMISGFV----QKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
              F ++  +D    +   +G +    +   +   R L   +     E ++ + +A+++ 
Sbjct: 421 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTM 480

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTW 166
           Y +CG ++ A  +F V P    V+W AMIS   + G    A +LFD+M  + +    +++
Sbjct: 481 YAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISF 540

Query: 167 NAMIAGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQL 223
             ++         ++G      M    GI P     + +  LLG     S ++G +   L
Sbjct: 541 LTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLG----RSGRIG-EARDL 595

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLE----DACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +   P     +    ++S     GD+E     A +LF  I + D  T+  + + Y+  G+
Sbjct: 596 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD-GTYILLSNTYSAAGR 654

Query: 280 GEKALRLFDKMKDEGMK 296
              A R+   M+D G+K
Sbjct: 655 WVDAARVRKLMRDRGVK 671


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/553 (42%), Positives = 351/553 (63%), Gaps = 12/553 (2%)

Query: 29  LFDK-IPQPDVVSYNIMLSCILLNSDDVVA--AFDFFQRLPIK-DTASWNTMISGF---- 80
           LF+K + + +V S+N +++ +  + D V A  AF   ++L +K + +++   I       
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 81  -VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
            +     A  + L         VS SA++  Y +CG+L  A  LF     +++V+WT+MI
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVS-SALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNA 198
           +GY++      A ++FD M  +++++WN++IA Y +N  + + +++   M+  G I  NA
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +LS+VLL C+H  S +LGK +H  V K  L  +    T +I MYCKCG +E A K F  
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           ++ K+V +W+AM++GY  HG  ++AL +F +M   G+KP+ ITFV++L AC+HAGL++ G
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
             +F +M +++ +    +HY CMVDLLGRAG L EA DLIK M  +P   ++G LL ACR
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 389

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +HK +DL E +A  LF L+P N  G YV L+NIYA   +W+DV R+R+ MK + +VK PG
Sbjct: 390 MHKNVDLGEISARKLFELDPKN-CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPG 448

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
           +S +++   VH F  GDR HP+   I+E L++L  +++  GYVPD+   LH VG E KE 
Sbjct: 449 FSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEM 508

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
           +L  HSEKLA+AFG++    GT I + KNLRVCGDCH A K+IS I  REI+VRD+ RFH
Sbjct: 509 VLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFH 568

Query: 559 HFKDGTCSCGDYW 571
           HF+DG CSCGDYW
Sbjct: 569 HFRDGLCSCGDYW 581


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 355/608 (58%), Gaps = 43/608 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK+  +  ++L G A+  G++ +A+ LF++IP P VVS+N M++  + N   V  A + F
Sbjct: 318 VKSIPSQTALLTGLARC-GRITEARILFEQIPDPIVVSWNAMITGYMQNGM-VDEAKELF 375

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------------------- 99
            R+P ++T SW  MI+G+ Q     +A DL  A+                          
Sbjct: 376 DRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALE 435

Query: 100 ----------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
                           NS   +A+IS Y +C  ++   ++F    VK  V+W + I+  +
Sbjct: 436 TGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALV 495

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           +   ++ A  +FD M ++++V+W  +I+ Y +    ++ ++  + M+    +PN+  L+ 
Sbjct: 496 QNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTI 555

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C  L S +LG+Q+H +  K  +  +      L+SMY KCG   D+ K+F  ++ +D
Sbjct: 556 LLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERD 614

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           + TWN  I+G AQHG G +A+++++ M+  G+ P+ +TFV LL AC+HAGLVD G Q+F 
Sbjct: 615 IFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFK 674

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           SM  DYG+    +HY CMVDLLGR G +  A   I  MP +P   I+  LL AC++HK  
Sbjct: 675 SMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNA 734

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           ++   AA  LF   P+NA G YV L+NIY+++  W +VA +R  MK+  V K PG SW++
Sbjct: 735 EIGRRAAEKLFTTEPSNA-GNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQ 793

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +   VH F +GD+ H ++  I   L++L   ++  GYVPD EF LH + EE KE  LL+H
Sbjct: 794 IRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYH 853

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SEKLA+A+GL+  P G PI++ KNLR+CGDCH   K++S + KR+I +RD  RFHHF++G
Sbjct: 854 SEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNG 913

Query: 564 TCSCGDYW 571
           +CSCGD+W
Sbjct: 914 SCSCGDFW 921



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 170/301 (56%), Gaps = 4/301 (1%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DVV    +L+    ++  +  A  FF  +  ++  +W+TMI+       +  A  ++ 
Sbjct: 255 ESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYG 314

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
             P K+  S +A+++G   CG++ +A  LF+  P   VV+W AMI+GYM+ G VD A++L
Sbjct: 315 RDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKEL 374

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD MP +N ++W  MIAGY +N  +E+ L LL+ +   G+ P+ SSL+S  L CSH+ +L
Sbjct: 375 FDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGAL 434

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + G+QVH L  K+    ++     LISMY KC ++E   ++F  ++ KD V+WN+ I+  
Sbjct: 435 ETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAAL 494

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            Q+   E A  +FD M    +  D +++  ++ A   A   D  +++F +M++++     
Sbjct: 495 VQNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNS 550

Query: 335 P 335
           P
Sbjct: 551 P 551



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 178/345 (51%), Gaps = 11/345 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L++A+E+FD +P  D++++N M+S    NS  +  A   F  +   +  +   ++SG+
Sbjct: 47  GRLREAREVFDAMPHRDIIAWNSMISA-YCNSGMLEDARILFDAISGGNVRTATILLSGY 105

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   +  AR +F  MPE+N+V+W+AM+S Y++ G +  A  LF   P + V +W +M++
Sbjct: 106 ARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVT 165

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           GY    ++  A  LF +MP +NLVTW  MI+GYV       G  + RMM   G  P+ S+
Sbjct: 166 GYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSN 225

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKLFLEI 259
            +SVL   + L  L + + +  LV K+    D    T ++++Y +    L+ A K F  +
Sbjct: 226 FASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGM 285

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             ++  TW+ MI+  +  G+ + A+ ++ +   + +   +    ALL      G +    
Sbjct: 286 VERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQT----ALLTGLARCGRITEAR 341

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             F+ + +   ++     +  M+    + G + EA +L  +MPF+
Sbjct: 342 ILFEQIPDPIVVS-----WNAMITGYMQNGMVDEAKELFDRMPFR 381



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 154/363 (42%), Gaps = 100/363 (27%)

Query: 65  LPIK------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           LP++      D ++ +  I    +   + +AR++F AMP ++ ++W++MIS Y   G L+
Sbjct: 22  LPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLE 81

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
            A  LF      +V   T ++SGY + G+V  A ++FD MP +N V WNAM++ YV+N  
Sbjct: 82  DARILFDAISGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQN-- 139

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
                                              + + ++    +F +   +D T+   
Sbjct: 140 ---------------------------------GDITMARR----LFDAMPSRDVTSWNS 162

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA---QHGKGEKALRLFDKMKDEGM 295
           +++ YC    + DA  LF ++ ++++VTW  MISGY    QHGKG    R+   M  EG 
Sbjct: 163 MVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRM---MHHEGA 219

Query: 296 KPDSITFVALLLACNHAGLVDLG------------------------------------- 318
            PD   F ++L A    GL DLG                                     
Sbjct: 220 SPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 319 -IQYFDSMV--NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
            I++FD MV  N+Y        ++ M+  L   G++  A+ +  + P K  P+    L  
Sbjct: 278 AIKFFDGMVERNEYT-------WSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTG 330

Query: 376 ACR 378
             R
Sbjct: 331 LAR 333


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/593 (41%), Positives = 354/593 (59%), Gaps = 35/593 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +KDA  +F+ +   DVVS+N M++     S    AAF+ F     + 
Sbjct: 298 NALIDTYAKC-GSMKDAVNVFNVMEFKDVVSWNAMVTG-YTQSGKFGAAFELFKNMRKEN 355

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA 120
           +P+ D  +W+ +I+G+ Q+    +A D F  M     E NSV+  +++S     G L + 
Sbjct: 356 IPL-DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQG 414

Query: 121 VELFKVAPVK----------------SVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKN 162
           +E    +  K                 +V   A+I  Y K      A  +F+ +P   +N
Sbjct: 415 METHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERN 474

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +VTW  MI GY +   + D LKL   MI     + PNA ++S +L+ C+HLSSL++GKQ+
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQI 534

Query: 221 HQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           H  V +    + +       LI MY KCGD++ A  +F  + +++ V+W +M+SGY  HG
Sbjct: 535 HAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG 594

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
           +G++AL +FDKM+  G  PD I+F+ LL AC+H+G+VD G+ YFD M +DYG+ A   HY
Sbjct: 595 RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHY 654

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            C++DLL R+G+L +A   I++MP +P  AI+  LLSACRVH  ++LAE+A   L ++  
Sbjct: 655 ACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKA 714

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
            N  G Y  ++NIYA  ++W DVARIR  MK++ + K PG SW++       F  GDR H
Sbjct: 715 END-GSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSH 773

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           P    I+  L+ L  R+K+ GYVP+  FALH V +E K  LL  HSEKLA+A+GL+    
Sbjct: 774 PLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSP 833

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           G PIR+ KNLRVCGDCH A  YIS I   EIIVRD++RFHHFK+G+CSCG YW
Sbjct: 834 GCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 174/396 (43%), Gaps = 67/396 (16%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------------------ 94
           +D    FD   R  I D  SWN++++  V+  N   A DLF                   
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDII 260

Query: 95  -------------AMPEKNSVS--------------WSAMISGYIECGQLDKAVELFKVA 127
                        A+P+   +                +A+I  Y +CG +  AV +F V 
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGL 183
             K VV+W AM++GY + GK   A +LF  M  +N+    +TW+A+IAGY +  + ++ L
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK------------ 231
              + MI  G  PN+ ++ S+L  C+ L +L  G + H    K  L              
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDK 289
           D      LI MY KC   + A  +F  I R++  VVTW  MI GYAQ+G    AL+LF +
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSE 500

Query: 290 M--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLG 346
           M  K   + P++ T   +L+AC H   + +G Q    +   +   +       C++D+  
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           + G +  A ++   MP K     + +++S   +H R
Sbjct: 561 KCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGR 595



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLR 187
           +V    A+++ Y + G ++ A  +FDE+  K   ++++WN+++A +V+ S     L L  
Sbjct: 183 NVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFS 242

Query: 188 MMIGL------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            M  +        R +  S+ ++L  C+ L +L   K++H    ++    D      LI 
Sbjct: 243 EMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALID 302

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y KCG ++DA  +F  ++ KDVV+WNAM++GY Q GK   A  LF  M+ E +  D IT
Sbjct: 303 TYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVIT 362

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           + A++      G     +  F  M+  YG  ++P+  T ++ LL     L
Sbjct: 363 WSAVIAGYAQRGYGQEALDTFQQMIL-YG--SEPNSVT-IISLLSACASL 408



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 14/240 (5%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +++ Y+  G    A  + + +     V WN ++  ++E    +  + +   M+  G +
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L   L  C  L S + G   H L+  +    +      L++MY + G LEDA  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 256 FLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSITFVALL 306
           F EI RK   DV++WN++++ + +      AL LF +M      K    + D I+ V +L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNIL 266

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 364
            AC     +    +     + +   A   D + C  ++D   + G + +AV++   M FK
Sbjct: 267 PACASLKALPQTKEIHSYAIRNGTFA---DAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 67/350 (19%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCI----LLNSDDVVAA 58
           + W++V+AG+A QRG  ++A + F ++     +P+ V+   +LS       L+      A
Sbjct: 361 ITWSAVIAGYA-QRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHA 419

Query: 59  FDFFQRL-----------PIKDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWS 105
           +   + L             +D    N +I  + + ++   AR +F ++P  E+N V+W+
Sbjct: 420 YSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWT 479

Query: 106 AMISGYIECGQLDKAVELFK--------VAP----------------------------- 128
            MI GY + G  + A++LF         VAP                             
Sbjct: 480 VMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVT 539

Query: 129 ----VKSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                +S V + A  +I  Y K G VD A  +FD MP +N V+W +M++GY  +   ++ 
Sbjct: 540 RHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEA 599

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLIS 241
           L +   M   G  P+  S   +L  CSH   +  G     ++     +         +I 
Sbjct: 600 LDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVID 659

Query: 242 MYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +  + G L+ A K   E+        W A++S    H   E A    +K+
Sbjct: 660 LLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKL 709


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/542 (42%), Positives = 341/542 (62%), Gaps = 25/542 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+WN +LA + +  G++++A++LFD   + D +S+N +++  +  S  +  A   F 
Sbjct: 157 KDAVSWNGMLAAYIRN-GRIQEARDLFDSRTEWDAISWNALMAGYVQCSQ-IEEAQKMFN 214

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           R+P +D  SWNTM+SG  ++ +MA+AR LF   P ++  +W+A++SGY + G L++A  +
Sbjct: 215 RMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRV 274

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F   P K+ V+W AM++ Y++   ++ A++LFD MP +N+ +WN M+ GY +    ++  
Sbjct: 275 FDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEAR 334

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            +  MM        A+ L++   G     +LQL K++ +                  +MY
Sbjct: 335 AIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGR-----------------CAMY 377

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG++E+A   F E++ +D+V+WN MI+GYA+HG G++AL +FD M+    KPD IT V
Sbjct: 378 FKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLV 437

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
            +L AC+H+GLV+ GI YF SM  D+G+ AKP+HYTCM+DLLGRAG+L EAV+L+K MPF
Sbjct: 438 GVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPF 497

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +P   ++G LL A R+H+  +L   AA  +F L P N AG YV L+NIYA+  KW DV +
Sbjct: 498 EPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPEN-AGMYVLLSNIYASSGKWRDVDK 556

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +RL M E  V K+PG+SWIEV   VH F  GD VHPE   I+  L++L+ RMK AGYV  
Sbjct: 557 MRLMMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYGFLEDLDIRMKKAGYVSA 616

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
            +  LH V EE KE +L +HSEKLA+A+G++K+P G PIR     + C   H  T  I  
Sbjct: 617 TDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIR-----QCCNLGHATTAKIVV 671

Query: 544 IE 545
           +E
Sbjct: 672 LE 673



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA+ LF  + +    +YN ML     N   +  A  FF+ +P  D+ S+NT++   
Sbjct: 49  GRVPDAERLFAAMSRRSTSTYNAMLGGYAANGR-LTLALSFFRSIPRPDSFSYNTLLHAL 107

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
               ++A AR LF  MP K+SVS++ MIS +   G +  A   F +AP K  V+W  M++
Sbjct: 108 GVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLA 167

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y++ G++  A  LFD     + ++WNA++AGYV+ S  E+  K+   M      P    
Sbjct: 168 AYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRM------PQRDV 221

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S   +   H     +  +  +L   +P+ +D    T ++S Y + G LE+A ++F  + 
Sbjct: 222 VSWNTMVSGHARRGDMA-EARRLFDVAPI-RDVFTWTAVVSGYAQNGMLEEAKRVFDAMP 279

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K+ V+WNAM++ Y Q    E+A  LFD M    +     ++  +L     AG++D    
Sbjct: 280 EKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARA 335

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            FD M     ++     +  M+    + G   E + L K+M
Sbjct: 336 IFDMMPQKDAVS-----WAAMLAAYSQGGFSEETLQLFKEM 371



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 189/435 (43%), Gaps = 49/435 (11%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           P  +    N  I+  ++   +  A  LF AM  +++ +++AM+ GY   G+L  A+  F+
Sbjct: 31  PDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFR 90

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL-K 184
             P     ++  ++        +  A  LFDEMP K+ V++N MI+ +     A  GL  
Sbjct: 91  SIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSH-----ANHGLVS 145

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L R    L    +A S + +L        +Q  +     +F S    D  +   L++ Y 
Sbjct: 146 LARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARD----LFDSRTEWDAISWNALMAGYV 201

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP--DSITF 302
           +C  +E+A K+F  + ++DVV+WN M+SG+A+ G   +A RLFD      + P  D  T+
Sbjct: 202 QCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFD------VAPIRDVFTW 255

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            A++      G+++   + FD+M     ++     +  M+    +   + EA +L   MP
Sbjct: 256 TAVVSGYAQNGMLEEAKRVFDAMPEKNAVS-----WNAMMAAYVQRRMMEEAKELFDAMP 310

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +   A + T+L+       LD     A  +F++ P   A  +  +   Y+     ++  
Sbjct: 311 CR-NVASWNTMLTGYAQAGMLD----EARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETL 365

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           ++                + E+G     F+ G+     +   H   +E+E+R  ++    
Sbjct: 366 QL----------------FKEMGRCAMYFKCGN-----MEEAHSAFEEMEERDIVSWNTM 404

Query: 483 DLEFALHAVGEEVKE 497
              +A H  G+E  E
Sbjct: 405 IAGYARHGFGKEALE 419


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/596 (41%), Positives = 351/596 (58%), Gaps = 47/596 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAF-----------DFFQRLPI 67
           G +  ++  FD+IPQ DV ++N M+S  + N    + +  F           DF+   P+
Sbjct: 65  GDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPV 124

Query: 68  ------------------KDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
                             K    WN     ++I  + +      AR LF  MP ++  SW
Sbjct: 125 LKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 184

Query: 105 SAMISGYIECGQLDKAVELF--------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
           +AMISG I+ G   +A+++         K+  V  V      +  Y K G +D A K+F+
Sbjct: 185 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFE 244

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQ 215
            +P K++++WN +I GY +N  A + +++ +MM     I PN  +  S+L   +H+ +LQ
Sbjct: 245 IIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQ 304

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            G ++H  V K+ L  D    T LI +Y KCG L DA  LF ++ ++  VTWNA+IS + 
Sbjct: 305 QGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 364

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            HG  EK L+LF +M DEG+KPD +TFV+LL AC+H+G V+ G   F  ++ +YGI    
Sbjct: 365 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSL 423

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            HY CMVDLLGRAG L  A D IK MP +P  +I+G LL ACR+H  ++L +FA+  LF 
Sbjct: 424 KHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE 483

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           ++  N  G YV L+NIYA + KW+ V ++R   +E  + K PG+S IEV   V  F +G+
Sbjct: 484 VDSKNV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGN 542

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
           + HP+   I+E+L+ L  +MK  GY+PD  F L  V E+ KE +L  HSE+LAIAFG+I 
Sbjct: 543 QSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIIS 602

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            P  +PIR+FKNLRVCGDCH ATK+IS I +REI+VRD+ RFHHFKDG CSCGDYW
Sbjct: 603 TPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 50/342 (14%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMI 108
           N  DV  +   F ++P KD  +WN+MIS +V   +  +A   F  L +  +    +    
Sbjct: 63  NLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 122

Query: 109 SGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                CG L    ++    FK+    +V    ++I  Y +FG   +A  LFD+MP +++ 
Sbjct: 123 PVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 182

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNAMI+G ++N  A   L +L  M   GI+ N  ++ S+L                   
Sbjct: 183 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL------------------- 223

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
              P+          + MY K G L+ A K+F  I  KDV++WN +I+GYAQ+G   +A+
Sbjct: 224 ---PV---------FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAI 271

Query: 285 RLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAAKPDHY 338
            ++  M++ + + P+  T+V++L A  H G +  G++    ++      D  +A      
Sbjct: 272 EVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA------ 325

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           TC++D+ G+ G+LV+A+ L  ++P +     +  ++S   +H
Sbjct: 326 TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIH 366



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 4/179 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLR 187
           V+S+   T +++ Y   G V L+   FD++P K++  WN+MI+ YV N    + +    +
Sbjct: 48  VQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQ 107

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +++   IRP+  +   VL  C  L     G+++H   FK     +      LI MY + G
Sbjct: 108 LLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFG 164

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
               A  LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+K + +T V++L
Sbjct: 165 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL 223



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 45/247 (18%)

Query: 211 LSSLQLGKQVHQLVF--------KSPLCKDTTAL-------------TPLISMYCKCGDL 249
            SS  LG Q  ++ F        K+P  K   AL             T L+++Y   GD+
Sbjct: 8   FSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDV 67

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLA 308
             +   F +I +KDV  WN+MIS Y  +G   +A+  F + +    ++PD  TF  +L A
Sbjct: 68  SLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKA 127

Query: 309 CN--------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           C         H     LG Q+      +  +AA       ++ +  R G    A  L   
Sbjct: 128 CGTLVDGRKIHCWAFKLGFQW------NVFVAAS------LIHMYSRFGFTGIARSLFDD 175

Query: 361 MPFKPQP---AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           MPF+      A+   L+      + LD+ +   +    +N            ++YA +  
Sbjct: 176 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGL 235

Query: 418 WDDVARI 424
            D   ++
Sbjct: 236 LDSAHKV 242


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/610 (40%), Positives = 353/610 (57%), Gaps = 42/610 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V+  V+WNS++ G     G L  A  LFD++P+ +V+S+  M++   L    V  A  
Sbjct: 69  MSVRDVVSWNSMIKG-CLDCGNLGMATRLFDEMPEKNVISWTTMVNG-YLKFGRVELAQR 126

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  + +KD A+WN M+ G+ +   + +   LF  MP ++ +SW++MI G    G+ ++A
Sbjct: 127 LFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEA 186

Query: 121 VELFK------VAPVKSVVAWT---------------------------------AMISG 141
           + +FK      V P  S  A                                   ++I+ 
Sbjct: 187 LFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITF 246

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y    K++ A K+F+E  TKN+V W A++  YV N+  +D L++   M  +G  PN S+ 
Sbjct: 247 YANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTF 306

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           S  L  C  L +L  GK++H +  K  L  D      L+ MY +CG++  A  +F  I  
Sbjct: 307 SITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINE 366

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           KD+V+WN++I G AQHG G  AL  F++M   G+ P+ ITF  LL AC+ +G++  G  +
Sbjct: 367 KDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCF 426

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           F+ +        +P HY CMVD+LGR GKL EA +L++ MP K    I+  LLSACRVH 
Sbjct: 427 FEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHS 486

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            L++AE AA ++ +L P N +  YV L+NIYA+  +W DV+R+R+ MK+  +VK PG SW
Sbjct: 487 NLEVAERAAKHILDLEP-NCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSW 545

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 501
           + +    HEF S DR HP    I+EKL  L K++K  GYVPD +FALH V +E KE++L 
Sbjct: 546 VVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLS 605

Query: 502 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
           FHSE+LAIAFGL+    G+ I V KNLRVCGDCH   K +S I  R+I+VRD+ RFHHFK
Sbjct: 606 FHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFK 665

Query: 562 DGTCSCGDYW 571
           +G CSC DYW
Sbjct: 666 NGICSCSDYW 675



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 170/304 (55%), Gaps = 2/304 (0%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T+++ + LA   K + +L  A+ +FDKIP P++  Y  M++    N D +  A   F R+
Sbjct: 12  TLSYTTSLANHLKNQ-RLDQARLIFDKIPSPNLHLYTKMIAGYTRN-DRLCDALKLFDRM 69

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
            ++D  SWN+MI G +   N+  A  LF  MPEKN +SW+ M++GY++ G+++ A  LF 
Sbjct: 70  SVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFL 129

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
              VK V AW AM+ GY + G+V+   +LF+EMP +++++W +MI G   N  +E+ L +
Sbjct: 130 DMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFV 189

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
            + M+  G+ P  S+ + VL  C++     LG QVH  V K            LI+ Y  
Sbjct: 190 FKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYAN 249

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           C  +E A K+F E   K+VV W A+++ Y  + K + ALR+F  M   G  P+  TF   
Sbjct: 250 CMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSIT 309

Query: 306 LLAC 309
           L AC
Sbjct: 310 LKAC 313


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/565 (40%), Positives = 352/565 (62%), Gaps = 16/565 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTM 76
           G   +A+E+FDK+ + D+VS+N+M+ C +LN D    A + +Q+L +    +  A++ ++
Sbjct: 256 GSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGD-FHEALELYQKLDMEGFKRTKATFVSI 314

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +      K +A+ R +   + E+   S     +A+++ Y +CG L++A ++F     +  
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 133 VAWTAMISGYMK--FGK-VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           VAW+ +I  Y    +GK    A K+FD + +++ ++WNAMI  YV+N  A   +K+ R M
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREM 434

Query: 190 IGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
            G  G++P+A +  +VL  C+ L  L   K +H  + +S L  +      LI+MY +CG 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           LE+A +LF   + K VV+W AM++ ++Q+G+  +AL LF +M  EG+KPD +T+ ++L  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C H G ++ G +YF  M   + +A   DH+  MVDLLGR+G+L +A +L++ MPF+P P 
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPV 614

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
            + T L+ACR+H +L+L E AA  ++ L+P++ A  Y+ ++NIYAA   W+ VA +R  M
Sbjct: 615 AWMTFLTACRIHGKLELGEAAAERVYELDPSSTAP-YIAMSNIYAAHGMWEKVASVRKKM 673

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           +E  + K+PG S+IEV   +HEF SG + HP    I E+L  L   M+ AGYVPD +  L
Sbjct: 674 EERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVL 733

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKV-PLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           H V E  KE +LL+HSEK+AIAFGL+     G PIRV KNLRVC DCH ATK+I+ I  R
Sbjct: 734 HDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGR 793

Query: 548 EIIVRDTTRFHHF-KDGTCSCGDYW 571
           +IIVRD  RFH F  DG CSCGDYW
Sbjct: 794 DIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 187/384 (48%), Gaps = 46/384 (11%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTMISGFVQKKNMAKAR 90
           QPD V++  +L C   +  DVV      +R+      +DT   N +IS + +  ++  AR
Sbjct: 4   QPDNVTFLTVL-CSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 91  DLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELF-----------KVAPVKSVVAWTA 137
            +F +M   ++N VSW+AMI+ Y + G   +A+ L+            V  V  + A ++
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 138 MISG-------------------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           +  G                         Y +FG V  A+++F  + T++  +WNA+I  
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILA 182

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           + ++      L++ + M    ++PN+++  +V+ G S    L  G+++H  +  +    D
Sbjct: 183 HSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTD 241

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI+MY KCG   +A ++F +++++D+V+WN MI  Y  +G   +AL L+ K+  
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG K    TFV++L AC+    +  G +   S + + G+ ++    T +V++  + G L 
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSA 376
           EA  +   M  +   A + TL+ A
Sbjct: 361 EARKVFNAMKNRDAVA-WSTLIGA 383



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 39/333 (11%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           A+IS Y K   +  A  +F+ M    +N+V+WNAMIA Y +N  + + L L   M   G+
Sbjct: 47  ALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL 106

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             +  +  SVL  CS   SL  G+++H  VF S L    +    L++MY + G + DA +
Sbjct: 107 GTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR 163

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---- 310
           +F  +Q +D  +WNA+I  ++Q G    ALR+F +MK + +KP+S T++ ++   +    
Sbjct: 164 MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEV 222

Query: 311 -------HAGLV----DLGIQYFDSMVNDYGIAAKPDH---------------YTCMVDL 344
                  HA +V    D  +    +++N YG                      +  M+  
Sbjct: 223 LPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGC 282

Query: 345 LGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
               G   EA++L +K+    FK   A F ++L AC   K L        ++      + 
Sbjct: 283 YVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
                 L N+YA     ++  ++  +MK  + V
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAV 375


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/617 (41%), Positives = 355/617 (57%), Gaps = 49/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL------- 49
           M  +  V WN++++G+A Q G  K A EL  ++ +    PD ++   +L  +        
Sbjct: 236 MPERDLVCWNTIISGYA-QNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRI 294

Query: 50  ---LNSDDVVAAFD------------------------FFQRLPIKDTASWNTMISGFVQ 82
              ++   + A F+                         F R+  K   SWN+MI G+VQ
Sbjct: 295 GRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQ 354

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVE-------LFKVAPVKSVVA 134
             +   A ++F  M ++     +  + G +  C  L    +       L ++     V  
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSV 414

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             ++IS Y K  +VD+A ++F+ +  K LV+WNAMI GY +N    + +     M    I
Sbjct: 415 MNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNI 474

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P++ ++ SV+   + LS L   K +H LV ++ L K+    T L+ MY KCG +  A K
Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARK 534

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF  +  + V TWNAMI GY  HG G+ AL LF+KMK E +KP+ +TF+ +L AC+H+GL
Sbjct: 535 LFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGL 594

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G QYF SM  DYG+    DHY  MVDLLGRA +L EA D I+KMP +P  ++FG +L
Sbjct: 595 VEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAML 654

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            ACR+HK ++L E AA  +F+L+P +  G +V LANIYA    WD VAR+R +M++  + 
Sbjct: 655 GACRIHKNVELGEKAANRIFDLDP-DDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQ 713

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG+S +E+   VH F SG   HP+   I+  L+ L  R+K AGY+PD   ++H V + 
Sbjct: 714 KTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTN-SVHDVEDV 772

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           VKEQLL  HSEKLAIAF L+    GT I + KNLRVCGDCH ATKYIS + KREIIVRD 
Sbjct: 773 VKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDM 832

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFKDGTCSCGDYW
Sbjct: 833 RRFHHFKDGTCSCGDYW 849



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 41/364 (11%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           V  A+  F R+P +D   WNT+ISG+ Q      A +L L M E+    +S++  +++  
Sbjct: 226 VEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA 285

Query: 111 YIECGQL--DKAVELFKV-APVKSVV-AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             + G L   +++  + + A  +S V   TA++  Y K G V  A  +FD M  K +V+W
Sbjct: 286 VADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSW 345

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+MI GYV+N      +++ + M+   +     ++   L  C+ L  ++ G+ VH+L+ +
Sbjct: 346 NSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ 405

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L  D + +  LISMY KC  ++ A ++F  +Q K +V+WNAMI GYAQ+G+  +A+  
Sbjct: 406 LELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDY 465

Query: 287 FDKMKDEGMKPDSITFVALLLACNH----------AGLV-----DLGIQYFDSMVNDYGI 331
           F KM+ + +KPDS T V+++ A              GLV     D  +    ++V+ Y  
Sbjct: 466 FCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAK 525

Query: 332 AA------------KPDHYT---CMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTL 373
                            H T    M+D  G  G    A++L +KM     KP    F  +
Sbjct: 526 CGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCV 585

Query: 374 LSAC 377
           LSAC
Sbjct: 586 LSAC 589



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 170/350 (48%), Gaps = 18/350 (5%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
           FQ +  K    ++TM+ G+ +  ++  A   F  M      P   + ++   + G  +  
Sbjct: 132 FQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCG--DNA 189

Query: 116 QLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            L K  E    L       +V A T +++ Y K   V+ A K+FD MP ++LV WN +I+
Sbjct: 190 DLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIIS 249

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +N + +  L+L+  M   G RP++ ++ S+L   + + SL++G+ +H    ++    
Sbjct: 250 GYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFES 309

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                T L+ MY KCG +  A  +F  +  K VV+WN+MI GY Q+G    A+ +F KM 
Sbjct: 310 FVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMM 369

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           DE ++  ++T +  L AC   G V+ G ++   +++   + +       ++ +  +  ++
Sbjct: 370 DEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRV 428

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSAC---RVHKRLDLAEFAAMNLFNLNP 398
             A ++ + +  K   +    +L      R+++ +D   F  M L N+ P
Sbjct: 429 DIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDY--FCKMQLQNIKP 476



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++S + KFG +  A ++F  +  K    ++ M+ GY  NS  +D +     M   G+R
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   + + +L  C   + L+ GK++H  +  +    +  A+T +++MY KC  +E+A K+
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +D+V WN +ISGYAQ+G G+ AL L  +M++EG +PDSIT V++L A    G +
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFK 364
            +G       ++ Y + A  + +    T +VD+  + G +  A  +  +M  K
Sbjct: 293 RIG-----RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK 340



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 218 KQVHQ---LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           K++HQ   L+ K+ L  +    T L+S++CK G L +A ++F  I+ K    ++ M+ GY
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A++   + A+  F +M+ +G++P    F  LL  C     +  G +    ++ + G A+ 
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVN-GFASN 209

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               T +V++  +   + EA  +  +MP
Sbjct: 210 VFAMTGVVNMYAKCRLVEEAYKMFDRMP 237


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/535 (42%), Positives = 327/535 (61%), Gaps = 40/535 (7%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----------- 124
           +I  +V+ +N+A AR +F  + + + +SW+AMI+ YI C  L++ V LF           
Sbjct: 268 LIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPN 327

Query: 125 ---KVAPVK-------------------------SVVAWTAMISGYMKFGKVDLAEKLFD 156
               ++ VK                         S+V  TA I  Y K G V  A  +FD
Sbjct: 328 EITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFD 387

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
              +K+L+ W+AMI+ Y +N+  ++   +   M G GIRPN  ++ S+L+ C+   SL++
Sbjct: 388 SFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEM 447

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK +H  + K  +  D    T  + MY  CGD++ A +LF E   +D+  WNAMISG+A 
Sbjct: 448 GKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAM 507

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG GE AL LF++M+  G+ P+ ITF+  L AC+H+GL+  G + F  MV+++G   K +
Sbjct: 508 HGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVE 567

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY CMVDLLGRAG L EA +LIK MP +P  A+FG+ L+AC++HK + L E+AA    +L
Sbjct: 568 HYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSL 627

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P + +G  V ++NIYA+  +W DVA IR +MK+  +VK PG S IEV  ++HEF  GDR
Sbjct: 628 EP-HKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDR 686

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
            HP+   ++E + E+ ++++ AGY PD+   LH + +E K   L +HSEKLA+A+GLI  
Sbjct: 687 EHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLIST 746

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             G PIR+ KNLRVC DCH ATK +S I  REIIVRD  RFHHFK+G+CSC DYW
Sbjct: 747 APGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 158/327 (48%), Gaps = 42/327 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D    N +I  + +  ++A AR LF  +  K+ VSWS MI  Y   G LD+A++L +   
Sbjct: 158 DVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMH 217

Query: 126 ---VAPV--------------------KSVVAW---------------TAMISGYMKFGK 147
              V P                     K++ A+               TA+I  Y+K   
Sbjct: 218 VMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN 277

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A ++FD +   ++++W AMIA Y+  +   +G++L   M+G G+ PN  ++ S++  
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE 337

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C    +L+LGK +H    ++         T  I MY KCGD+  A  +F   + KD++ W
Sbjct: 338 CGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMW 397

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           +AMIS YAQ+   ++A  +F  M   G++P+  T V+LL+ C  AG +++G ++  S ++
Sbjct: 398 SAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYID 456

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             GI       T  VD+    G +  A
Sbjct: 457 KQGIKGDMILKTSFVDMYANCGDIDTA 483



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAM 107
           DV +A   F     KD   W+ MIS + Q   + +A D+F+ M      P + ++    M
Sbjct: 378 DVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLM 437

Query: 108 I---SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           I   +G +E G+   +  + K      ++  T+ +  Y   G +D A +LF E   +++ 
Sbjct: 438 ICAKAGSLEMGKWIHSY-IDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS 496

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQL 223
            WNAMI+G+  +   E  L+L   M  LG+ PN  +    L  CSH   LQ GK++ H++
Sbjct: 497 MWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKM 556

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGK--- 279
           V +            ++ +  + G L++A +L   +  R ++  + + ++    H     
Sbjct: 557 VHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKL 616

Query: 280 GEKALRLF 287
           GE A + F
Sbjct: 617 GEWAAKQF 624



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%)

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
           E  + N    + +I  Y++N+   D  K+   M G     +   + SVL  C  + S  L
Sbjct: 83  ESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLL 142

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G++VH  V K+    D      LI MY + G L  A  LF +I+ KDVV+W+ MI  Y +
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G  ++AL L   M    +KP  I  +++
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISI 231


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/605 (41%), Positives = 352/605 (58%), Gaps = 46/605 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  G    A+ +FD++   D+ S+N M++ + +    +  A   F+++  +D
Sbjct: 185 NSLLNMYAKC-GDPMMAKVVFDRMVVKDISSWNAMIA-LHMQVGQMDLAMAQFEQMAERD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-------PEK----------------------- 99
             +WN+MISG+ Q+    +A D+F  M       P++                       
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 100 ----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKS--VVAWTAMISGYMKFGK 147
                     + +  +A+IS Y  CG ++ A  L +    K   +  +TA++ GY+K G 
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           ++ A+ +FD +  +++V W AMI GY ++    + + L R M+G   RPN+ +L+++L  
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVT 266
            S L+SL  GKQ+H    KS      +    LI+MY K G +  A + F  I+  +D V+
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVS 482

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W +MI   AQHG  E+AL LF+ M  EG++PD IT+V +  AC HAGLV+ G QYFD M 
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           +   I     HY CMVDL GRAG L EA + I+KMP +P    +G+LLSACRV+K +DL 
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           + AA  L  L P N+ G Y  LAN+Y+A  KW++ A+IR SMK+  V K  G+SWIEV  
Sbjct: 603 KVAAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            VH F   D +HP+   I+  +K++   +K  GYVPD    LH + EEVKEQ+L  HSEK
Sbjct: 662 KVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEK 721

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LAIAFGLI  P  T +R+ KNLRVC DCH A K+IS +  REIIVRDTTRFHHFKDG CS
Sbjct: 722 LAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCS 781

Query: 567 CGDYW 571
           C DYW
Sbjct: 782 CRDYW 786



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 195/432 (45%), Gaps = 91/432 (21%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  ++K  G    A++LFD++P     S+N +LS       D+ ++ +FF RLP +D
Sbjct: 53  NNLMNVYSKT-GYALHARKLFDEMPLRTAFSWNTVLSA-YAKRGDMDSSCEFFDRLPQRD 110

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPE------------------------------- 98
           + SW TMI G+   KN+ +       M E                               
Sbjct: 111 SVSWTTMIVGY---KNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKK 167

Query: 99  ----------KNSVSWS-AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
                     + +VS S ++++ Y +CG    A  +F    VK + +W AMI+ +M+ G+
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQ 227

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLL 206
           +DLA   F++M  +++VTWN+MI+GY +  +    L +  +M+    + P+  +L+SVL 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-------------------- 246
            C++L  L +G+Q+H  +  +        L  LISMY +C                    
Sbjct: 288 ACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKI 347

Query: 247 -------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                        GD+ +A  +F  ++ +DVV W AMI GY QHG   +A+ LF  M  E
Sbjct: 348 EGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGE 407

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGK 350
             +P+S T  A+L   +    +  G Q   S V     Y ++        ++ +  +AG 
Sbjct: 408 EQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGS 463

Query: 351 LV---EAVDLIK 359
           +     A DLI+
Sbjct: 464 ITSASRAFDLIR 475



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +      AR LF  MP + + SW+ ++S Y + G +D + E F   P +  V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSV 112

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLRMM 189
           +WT MI GY   G+   A ++  EM  + +     T   ++A        E G K+   +
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFI 172

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           + LG+R N S  +S+L   +      + K    +VF   + KD ++   +I+++ + G +
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAK----VVFDRMVVKDISSWNAMIALHMQVGQM 228

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLA 308
           + A   F ++  +D+VTWN+MISGY Q G   +AL +F KM +D  + PD  T  ++L A
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSA 288

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           C +   + +G Q    +V   G          ++ +  R G +  A  LI++
Sbjct: 289 CANLEKLCIGEQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRLIEQ 339



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKCG 247
           P   SLS++L  C++L    + K         VH  V KS L      +  L+++Y K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
               A KLF E+  +   +WN ++S YA+ G  + +   FD++     + DS+++  +++
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLP----QRDSVSWTTMIV 119

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
              + G     I+    M+ + GI  +P  +T
Sbjct: 120 GYKNIGQYHKAIRIMGEMMRE-GI--EPSQFT 148


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/613 (39%), Positives = 357/613 (58%), Gaps = 54/613 (8%)

Query: 10  NSVLAGFAKQRGKLK-------DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           N++L+ + K+  +L         A++LFD++P+ D +++  M++  + N DD+  A + F
Sbjct: 188 NALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRN-DDLNGAREVF 246

Query: 63  QRLPIKDTASWNTMISGFVQ-------------------------------------KKN 85
           + +     A+WN MISG+V                                         
Sbjct: 247 EAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQ 306

Query: 86  MAKARDLFLAMPEKN-------SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           M K    ++   E N       SVS +A+I+ Y +  ++D+A ++F   PV++++ W A+
Sbjct: 307 MGKQVHAYILKNELNPNHSFCLSVS-NALITLYCKNNKVDEARKIFYAMPVRNIITWNAI 365

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +SGY+  G+++ A+  F+EMP KNL+T   MI+G  +N + ++GLKL + M   G  P  
Sbjct: 366 LSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCD 425

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            + +  L  CS L +L+ G+Q+H  +         +    +ISMY KCG +E A  +F+ 
Sbjct: 426 FAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVT 485

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +   D+V+WN+MI+   QHG G KA+ LFD+M  EG+ PD ITF+ +L AC+HAGLV+ G
Sbjct: 486 MPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKG 545

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
             YF+SM+  YGI    DHY  MVDL  RAG    A  +I  MP KP   ++  LL+ CR
Sbjct: 546 RHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCR 605

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +H  +DL   AA  LF L P N  G YV L+NIYA + +W++VA++R  M++  V K P 
Sbjct: 606 IHGNMDLGIEAAEQLFKLMPQND-GTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPA 664

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SWIEV   VH F   D VHPE++S++  L++L   MK  GY+PD +F LH +  E KE 
Sbjct: 665 CSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEH 724

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
            L  HSEKLA+ FG++K+P G  +RVFKN+R+CGDCH A K++S + +REIIVRD  RFH
Sbjct: 725 ALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFH 784

Query: 559 HFKDGTCSCGDYW 571
           HFK+G CSC DYW
Sbjct: 785 HFKNGDCSCRDYW 797



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 220/489 (44%), Gaps = 125/489 (25%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPI 67
           N +L  + K    L  A++LF++IP PD ++   +++  C L N +      + F   P+
Sbjct: 52  NRLLEMYCKS-SNLVYARQLFEEIPNPDAIARTTLITAYCALGNLE---LGREIFNGTPL 107

Query: 68  --KDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYI-------EC 114
             +D+  +N MI+G+    +   A +LF AM   +      ++++++S  +       +C
Sbjct: 108 YMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQC 167

Query: 115 GQLDKAV--------------------------------------ELFKVAPVKSVVAWT 136
           GQ+  AV                                      +LF   P +  + WT
Sbjct: 168 GQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWT 227

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            MI+GY++   ++ A ++F+ M       WNAMI+GYV     ++ L L R M  LGI+ 
Sbjct: 228 TMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQF 287

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGDLEDA 252
           +  + ++++  C+++ S Q+GKQVH  + K+ L  +     +    LI++YCK   +++A
Sbjct: 288 DDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEA 347

Query: 253 CKLFLEIQRKDVVTWNAMISGY-------------------------------AQHGKGE 281
            K+F  +  ++++TWNA++SGY                               AQ+G G+
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQYFDSMV 326
           + L+LF +M+ +G +P    F   L AC+           HA LV LG    +   ++M+
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467

Query: 327 NDY---GIAAKPD------------HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPA 368
           + Y   G+    +             +  M+  LG+ G  V+A++L  +M  +   P   
Sbjct: 468 SMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRI 527

Query: 369 IFGTLLSAC 377
            F T+L+AC
Sbjct: 528 TFLTVLTAC 536



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 64/156 (41%), Gaps = 35/156 (22%)

Query: 188 MMIGLGIRPNASSLSSVLLGCS--HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           M   L IR  A+  +  L  CS    +S  L + VH  +  S        L  L+ MYCK
Sbjct: 1   MRNALDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK 60

Query: 246 CGDLEDACKLFLEIQR---------------------------------KDVVTWNAMIS 272
             +L  A +LF EI                                   +D V +NAMI+
Sbjct: 61  SSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           GYA +G G  AL LF  M+ +  +PD  TF ++L A
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSA 156


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/517 (43%), Positives = 320/517 (61%), Gaps = 14/517 (2%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIEC 114
           FD F R+ + D          +V+   +     LF   P++N       W+ +I+G  + 
Sbjct: 171 FDSFVRVSLVDM---------YVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV 221

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G L KA  LF+  P ++  +W ++I+G+++ G +D A +LF +MP KN+V+W  MI G+ 
Sbjct: 222 GDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFS 281

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +N   E  L +   M+  G+RPN  ++ S LL C+ + +LQ+G+++H  +  +    +  
Sbjct: 282 QNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRG 341

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
             T L+ MY KCG+++ A ++F+E + KD++TW+ MI G+A HG  ++AL+ F KMK  G
Sbjct: 342 IGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAG 401

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           + PD + F+A+L AC+H+G VD G+ +F+SM  DY I     HYT +VDLLGRAG+L EA
Sbjct: 402 INPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEA 461

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
           +  I+ MP  P   I+G L  ACR HK +++AE  A  L  L P +  G YV L+N+YAA
Sbjct: 462 LSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKH-PGSYVFLSNVYAA 520

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
           + +W+DV R+R  MK   V K PG+S+IEV   VH F +GD  H     I  KL+E+   
Sbjct: 521 VGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITAS 580

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
            K  GY+P+  + LH + EE KE  L  HSEKLA+AFGLI    G+ IR+ KNLRVCGDC
Sbjct: 581 AKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDC 640

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H   KY S + +REII+RD  RFHHFKDGTCSCGDYW
Sbjct: 641 HSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 153/334 (45%), Gaps = 47/334 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTM 76
           G+L    +LFD+ PQ +    +I+L  +L+N      D+  A   F+ +P ++  SWN++
Sbjct: 187 GELGFGLQLFDESPQRNKAE-SILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSL 245

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAP-- 128
           I+GFV+  ++ +AR+LF+ MPEKN VSW+ MI+G+ + G  +KA+ +F       V P  
Sbjct: 246 INGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPND 305

Query: 129 ---VKSVVA----------------------------WTAMISGYMKFGKVDLAEKLFDE 157
              V +++A                             TA++  Y K G +  A ++F E
Sbjct: 306 LTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVE 365

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
              K+L+TW+ MI G+  +   +  L+    M   GI P+     ++L  CSH  ++  G
Sbjct: 366 TKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQG 425

Query: 218 KQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 275
               + +     +       T ++ +  + G L++A      +    D V W A+     
Sbjct: 426 LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACR 485

Query: 276 QHGKGEKALRLFDK-MKDEGMKPDSITFVALLLA 308
            H   E A    +K ++ E   P S  F++ + A
Sbjct: 486 AHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 116/285 (40%), Gaps = 67/285 (23%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +IS       +D A  +F      NL  +NA+I G  ENS  E  +    +M+ L IR
Sbjct: 76  TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY------------ 243
           P+  +L  VL   + L  + LG+ +H  V K  L  D+     L+ MY            
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195

Query: 244 -----------------------CKCGDLEDACKLFLEIQRKDVVTWNA----------- 269
                                  CK GDL  A  LF  +  ++  +WN+           
Sbjct: 196 FDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDL 255

Query: 270 --------------------MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
                               MI+G++Q+G  EKAL +F +M +EG++P+ +T V+ LLAC
Sbjct: 256 DRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC 315

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              G + +G +   + ++  G        T +VD+  + G +  A
Sbjct: 316 TKIGALQVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSA 359



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 48/280 (17%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  +F   L  ++  +T LIS  C    L+ A  +F      ++  +NA+I G A++ 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 279 KGEKALRLFDKMKDEGMKPDSITF------VALLL-----ACNHAGLVDLGIQYFDSMVN 327
           + E ++  F  M    ++PD +T       VA L+      C H G++ LG++ FDS V 
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVR 176

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA---IFGTLLSACRVHKRLD 384
                        +VD+  + G+L   + L  + P + +     ++  L++ C   K  D
Sbjct: 177 -----------VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGC--CKVGD 223

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           L++  A +LF   P   AG +  L N +      D    + + M E NVV     SW   
Sbjct: 224 LSK--AASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVV-----SWT-- 274

Query: 445 GTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
            T+++ F ++GD         HEK   +  RM   G  P+
Sbjct: 275 -TMINGFSQNGD---------HEKALSMFWRMLEEGVRPN 304


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/620 (39%), Positives = 365/620 (58%), Gaps = 61/620 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNS------ 52
           +  V+W +++AGFA Q G++++A   F+K+ +    P+ V++ +I+ +C   ++      
Sbjct: 370 RNVVSWTAMIAGFA-QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQ 428

Query: 53  --DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
             D ++ A        I D      ++S + +  ++  AR++F  + ++N V+W+AMI+ 
Sbjct: 429 IHDRIIKAG------YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITA 482

Query: 111 YIECGQLDKAVELFK------VAPVKSVVA----------------W------------- 135
           Y++  + D AV  F+      + P  S                   W             
Sbjct: 483 YVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESD 542

Query: 136 ----TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
                A++S ++  G +  A  LF++MP ++LV+WN +IAG+V++   +      +MM  
Sbjct: 543 LHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE 602

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G++P+  + + +L  C+   +L  G+++H L+ ++ L  D    T LISMY KCG ++D
Sbjct: 603 SGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDD 662

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F  + +K+V +W +MI+GYAQHG+G++AL LF +M+ EG+KPD ITFV  L AC H
Sbjct: 663 AHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAH 722

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AGL+  G+ +F+SM  D+ I  + +HY CMVDL GRAG L EAV+ I KM  KP   ++G
Sbjct: 723 AGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWG 781

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL AC+VH  ++LAE  A     L+P N  G YV L+NIYAA   W +V ++R  M + 
Sbjct: 782 ALLGACQVHLDVELAEKVAQKKLELDP-NDDGVYVILSNIYAAAGMWKEVTKMRKVMLDR 840

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            VVK PG SWIEV   VH F S D+ HP++  IH +L  L   MK  GYVPD  + LH V
Sbjct: 841 GVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDV 900

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +  KE  L  HSE+LAIA+GL+K P  TPI + KNLRVCGDCH ATK IS I KR+II 
Sbjct: 901 EDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIA 960

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD+ RFHHFKDG CSCGD+W
Sbjct: 961 RDSNRFHHFKDGVCSCGDFW 980



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 206/374 (55%), Gaps = 18/374 (4%)

Query: 30  FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           F KI QPD+  +N+++S +     +  +A   F  +P KD  SWN ++ G+VQ +   +A
Sbjct: 132 FSKI-QPDIFMWNMLIS-MYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEA 189

Query: 90  RDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKV----APVKSVVAWTAMI 139
             L   M      P+K +  +  M++   +   +DK  ELF +         +   TA+I
Sbjct: 190 FRLHEQMVQDGVKPDKYTFVY--MLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALI 247

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           + ++K G VD A K+F+ +P ++L+TW +MI G   +   +    L ++M   G++P+  
Sbjct: 248 NMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKV 307

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +  S+L  C+H  +L+ GK+VH  + +  L  +    T L+SMY KCG +EDA ++F  +
Sbjct: 308 AFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLV 367

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           + ++VV+W AMI+G+AQHG+ E+A   F+KM + G++P+ +TF+++L AC+    +  G 
Sbjct: 368 KGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGR 427

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           Q  D ++   G        T ++ +  + G L++A ++ +++  K     +  +++A   
Sbjct: 428 QIHDRIIK-AGYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQ 485

Query: 380 HKRLD--LAEFAAM 391
           H++ D  +A F A+
Sbjct: 486 HEKYDNAVATFQAL 499



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 197/405 (48%), Gaps = 48/405 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC------------ 47
           K   +WN +L G+ + R + ++A  L +++ Q    PD  ++  ML+             
Sbjct: 168 KDVYSWNLLLGGYVQHR-RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGE 226

Query: 48  ---ILLNSD-------------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
              ++LN+                     V  A   F  LP +D  +W +MI+G  + + 
Sbjct: 227 LFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQ 286

Query: 86  MAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTA 137
             +A +LF  M E+    + V++ +++        L++       + +V     +   TA
Sbjct: 287 FKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTA 346

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S Y K G ++ A ++F+ +  +N+V+W AMIAG+ ++   E+       MI  GI PN
Sbjct: 347 LLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPN 406

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  S+L  CS  S+L+ G+Q+H  + K+    D    T L+SMY KCG L DA  +F 
Sbjct: 407 RVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFE 466

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I +++VV WNAMI+ Y QH K + A+  F  +  EG+KPDS TF ++L  C     ++L
Sbjct: 467 RISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALEL 526

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           G ++  S++   G  +       +V +    G L+ A++L   MP
Sbjct: 527 G-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP 570



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 141/243 (58%), Gaps = 3/243 (1%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           ++   ++  K+ P   +  W  +IS Y K G  + A+++FDEMP K++ +WN ++ GYV+
Sbjct: 125 RIHNHIKFSKIQP--DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQ 182

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           +   E+  +L   M+  G++P+  +   +L  C+   ++  G ++  L+  +    D   
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFV 242

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            T LI+M+ KCG ++DA K+F  + R+D++TW +MI+G A+H + ++A  LF  M++EG+
Sbjct: 243 GTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGV 302

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           +PD + FV+LL ACNH   ++ G +    M  + G+  +    T ++ +  + G + +A+
Sbjct: 303 QPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSMEDAL 361

Query: 356 DLI 358
           ++ 
Sbjct: 362 EVF 364



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 43/233 (18%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+ +  + SS+L  C    +L  G+++H  +  S +  D      LISMY KCG+   A 
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F E+  KDV +WN ++ GY QH + E+A RL ++M  +G+KPD  TFV +L AC  A 
Sbjct: 160 QIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAK 219

Query: 314 LVDLGIQYFDSMVND-------YGIAAKPDHYTC-----------------------MVD 343
            VD G + F  ++N         G A    H  C                       M+ 
Sbjct: 220 NVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMIT 279

Query: 344 LLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC----------RVHKRL 383
            L R  +  +A +L + M     +P    F +LL AC          RVH R+
Sbjct: 280 GLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/556 (41%), Positives = 334/556 (60%), Gaps = 40/556 (7%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V  A   F  +P K+   +NT+I+G ++   +  +R LF  M EK+S+SW+AMI+G+ + 
Sbjct: 193 VFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQN 252

Query: 115 GQLDKAVELFK--------------------------VAPVKSVVAW------------- 135
           G   +A++LF+                          +   K V A+             
Sbjct: 253 GLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG 312

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +A++  Y K   +  AE +F +M  KN+V+W AM+ GY +N ++E+ +K+   M   GI 
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L SV+  C++L+SL+ G Q H     S L    T    L+++Y KCG +ED+ +L
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E+   D V+W A++SGYAQ GK  + LRLF+ M   G KPD +TF+ +L AC+ AGLV
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLV 492

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G Q F+SM+ ++ I    DHYTCM+DL  RAG+L EA   I KMPF P    + +LLS
Sbjct: 493 QKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           +CR H+ +++ ++AA +L  L P N A  Y+ L++IYAA  KW++VA +R  M++  + K
Sbjct: 553 SCRFHRNMEIGKWAAESLLKLEPHNTAS-YILLSSIYAAKGKWEEVANLRKGMRDKGLRK 611

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG SWI+    VH F + D+ +P    I+ +L++L  +M   GYVPD+   LH V +  
Sbjct: 612 EPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSE 671

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           K ++L  HSEKLAIAFGLI +P G PIRV KNLRVCGDCH ATKYIS I +REI+VRD  
Sbjct: 672 KIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAA 731

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH FKDG CSCGD+W
Sbjct: 732 RFHLFKDGRCSCGDFW 747



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 206/445 (46%), Gaps = 83/445 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----DFFQRL 65
           N++++ +AK   ++  A+ +FD++PQ ++ S+N +LS     S   +A        F  +
Sbjct: 48  NNLVSAYAK-FDRITYARRVFDQMPQRNLYSWNTLLS-----SYSKLACLPEMERVFHAM 101

Query: 66  PIKDTASWNTMISGFVQKKNM---AKARDLFLAMP--EKNSVSWSAM------------- 107
           P +D  SWN++IS +  +  +    KA +L L       N ++ S M             
Sbjct: 102 PTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLG 161

Query: 108 ----------------------ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                                 +  Y + G +  A + F   P K+VV +  +I+G M+ 
Sbjct: 162 LQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRC 221

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
            +++ + +LF +M  K+ ++W AMIAG+ +N    + + L R M    +  +  +  SVL
Sbjct: 222 SRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVL 281

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C  + +LQ GKQVH  + ++    +    + L+ MYCKC  ++ A  +F ++  K+VV
Sbjct: 282 TACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVV 341

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF--- 322
           +W AM+ GY Q+G  E+A+++F  M++ G++PD  T  +++ +C +   ++ G Q+    
Sbjct: 342 SWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRA 401

Query: 323 ------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAV 355
                       +++V  YG     +                +T +V    + GK  E +
Sbjct: 402 LVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETL 461

Query: 356 DLIKKM---PFKPQPAIFGTLLSAC 377
            L + M    FKP    F  +LSAC
Sbjct: 462 RLFESMLAHGFKPDKVTFIGVLSAC 486



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 144/329 (43%), Gaps = 49/329 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K +++W +++AGF  Q G  ++A +LF ++   ++         +L     V+A  +
Sbjct: 234 MQEKDSISWTAMIAGFT-QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQE 292

Query: 61  ------FFQRLPIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 +  R   +D     + ++  + + K++  A  +F  M  KN VSW+AM+ GY +
Sbjct: 293 GKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQ 352

Query: 114 CGQLDKAVELF------KVAP---------------------------------VKSVVA 134
            G  ++AV++F       + P                                 +  +  
Sbjct: 353 NGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITV 412

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+++ Y K G ++ + +LF EM   + V+W A+++GY +   A + L+L   M+  G 
Sbjct: 413 SNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGF 472

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDAC 253
           +P+  +   VL  CS    +Q G Q+ + + K   +       T +I ++ + G LE+A 
Sbjct: 473 KPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEAR 532

Query: 254 KLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
           K   ++    D + W +++S    H   E
Sbjct: 533 KFINKMPFSPDAIGWASLLSSCRFHRNME 561


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/529 (45%), Positives = 325/529 (61%), Gaps = 9/529 (1%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSA 106
           N   +V+A   F ++  K   SW TMI  + Q     +A  LF    +A  + N ++   
Sbjct: 184 NCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVN 243

Query: 107 MISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           +++       L+ A ++ K      +    V  +A++  Y K G   LA  LF++MP KN
Sbjct: 244 VLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKN 303

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           L  WN MI G+VE+S  E+ L L   M   G++ +  +++S+L+ C+HL +L+LGK +H 
Sbjct: 304 LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV 363

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            + K  +  D    T L+ MY KCG +E A ++F E+  KDV+TW A+I G A  G+G K
Sbjct: 364 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLK 423

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL LF +M+   +KPD+ITFV +L AC+HAGLV+ GI YF+SM N YGI    +HY CMV
Sbjct: 424 ALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 483

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           D+LGRAG++ EA DLI+ MP  P   +   LLSACR+H  L +AE AA  L  L+P N  
Sbjct: 484 DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKN-G 542

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G YV L+NIY++MK W+   ++R  M E N+ K PG S IEVG VVHEF  GD  HP+  
Sbjct: 543 GTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSS 602

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I+E L ++ +R+K AGYVPD    L  + E+ KE  L  HSEKLAIAFGL+    GTPI
Sbjct: 603 EIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPI 662

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RV KNLRVC DCH A K+IS +  REIIVRD  RFHHF  G+CSC D+W
Sbjct: 663 RVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 8/328 (2%)

Query: 43  IMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKN 100
           I+  C L +S  +  A   F ++P   T + N++I G+  K N+ +   LF  L M +  
Sbjct: 78  IVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNK-NLPRQAILFYQLMMLQGL 136

Query: 101 SVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
                   S +  CG L +  +L     K+           +++ Y   G +  A K+FD
Sbjct: 137 DPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD 196

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
           +M  K++V+W  MI  Y +     + +KL R M    ++PN  +L +VL  C+    L+ 
Sbjct: 197 KMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLET 256

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
            KQVH+ + ++ +   T   + L+ +YCKCG    A  LF ++  K++  WN MI+G+ +
Sbjct: 257 AKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVE 316

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
               E+AL LF++M+  G+K D +T  +LL+AC H G ++LG ++    +    I     
Sbjct: 317 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVA 375

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             T +VD+  + G +  A+ + ++MP K
Sbjct: 376 LGTALVDMYAKCGSIESAMRVFQEMPEK 403



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 131/287 (45%), Gaps = 20/287 (6%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
           A++LF+K+P+ ++  +NIM++  + +SD  + ++ F+  Q   +K D  +  +++     
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 83  KKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
              +   + L + + EK  +       +A++  Y +CG ++ A+ +F+  P K V+ WTA
Sbjct: 352 LGALELGKWLHVYI-EKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTA 410

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLRMMIG-L 192
           +I G    G+   A +LF EM    +    +T+  ++A         +G+     M    
Sbjct: 411 LIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKY 470

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL--- 249
           GI+P+      ++     L       +   L+   P+  D   L  L+S     G+L   
Sbjct: 471 GIQPSIEHYGCMV---DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVA 527

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           E A +  +E+  K+  T+  + + Y+     E A ++ + M +  +K
Sbjct: 528 ERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 574


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/572 (41%), Positives = 351/572 (61%), Gaps = 16/572 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G + DA+  FD++P+ +VV  N M++  L+    +  +   F  L  +D+
Sbjct: 177 SPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITG-LMRCGMIEESQRLFCGLKERDS 235

Query: 71  ASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIECGQLDKAVE---- 122
            SW  MI+G +Q     +A D+F    LA    +  ++ ++++    CG L    E    
Sbjct: 236 ISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTA---CGSLLALGEGKQI 292

Query: 123 ---LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
              + +     +V   +A++  Y K   +  AE +F  MP KN+++W AM+ GY +N ++
Sbjct: 293 HAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFS 352

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E+ +K+   M   G+ P+  +L SV+  C++L+SL+ G Q H     S L    T    L
Sbjct: 353 EEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNAL 412

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I++Y KCG  E++ +LF E+  +D V+W A+++GYAQ GK  + + LF++M   G+KPD 
Sbjct: 413 ITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDG 472

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TF+ +L AC+ AGLV+ G+QYF+SM+ ++GI    DH TC++DLLGRAG+L EA + I 
Sbjct: 473 VTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFIN 532

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP  P    + TLLS+CRVH  +++ ++AA +L  L P N A  YV L+++YA+  KWD
Sbjct: 533 NMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPAS-YVLLSSLYASKGKWD 591

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
            VA++R  M++  V K PGYSWI+    VH F + D+  P L  I+ +L++L  +M   G
Sbjct: 592 KVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEG 651

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           YVPD+   LH V E  K ++L  HSEKLAIAFGLI VP G PIRV KNLRVCGDCH ATK
Sbjct: 652 YVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATK 711

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +IS I +REI+VRD  RFH FKDGTCSCGD+W
Sbjct: 712 FISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 199/441 (45%), Gaps = 75/441 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  + K  G L  A  +FD IPQP++ S+N +LS +      +      F  +P +D
Sbjct: 44  NNLITAYYKL-GNLAYAHHVFDHIPQPNLFSWNTILS-VYSKLGLLSQMQQIFNLMPFRD 101

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAM---------------IS 109
             SWN  ISG+    + + A  ++  M +      N +++S M               I+
Sbjct: 102 GVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQIN 161

Query: 110 G--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
           G                    Y + G +  A   F   P ++VV    MI+G M+ G ++
Sbjct: 162 GQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIE 221

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            +++LF  +  ++ ++W  MI G ++N    + L + R M   G   +  +  SVL  C 
Sbjct: 222 ESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACG 281

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L +L  GKQ+H  V ++    +    + L+ MY KC  ++ A  +F  + +K+V++W A
Sbjct: 282 SLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTA 341

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 322
           M+ GY Q+G  E+A+++F +M+  G++PD  T  +++ +C +   ++ G Q+        
Sbjct: 342 MLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 401

Query: 323 --------DSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIK 359
                   ++++  YG     ++               +T ++    + GK  E + L +
Sbjct: 402 LISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFE 461

Query: 360 KM---PFKPQPAIFGTLLSAC 377
           +M     KP    F  +LSAC
Sbjct: 462 RMLAHGLKPDGVTFIGVLSAC 482



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 20/311 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDF 61
           K  V   S L     +   +K A+ +F ++PQ +V+S+  ML     N  S++ V  F  
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFE 361

Query: 62  FQRLPIK-DTASWNTMISGFVQKKNMAKA-----RDLFLAMPEKNSVSWSAMISGYIECG 115
            QR  ++ D  +  ++IS      ++ +      R L   +    +VS +A+I+ Y +CG
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVS-NALITLYGKCG 420

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIA 171
             + +  LF    ++  V+WTA+++GY +FGK +    LF+ M    L    VT+  +++
Sbjct: 421 STENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLS 480

Query: 172 GYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
                   E GL+    MI   GI P     + ++        L+   +    +   P  
Sbjct: 481 ACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLE---EARNFINNMPCH 537

Query: 231 KDTTALTPLISMYCKCGDLED---ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            D      L+S     GD+E    A    + ++ ++  ++  + S YA  GK +K  +L 
Sbjct: 538 PDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLR 597

Query: 288 DKMKDEGMKPD 298
             M+D+ ++ +
Sbjct: 598 RGMRDKRVRKE 608



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 33/193 (17%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +S+L  C    +    K++H L+ K+    +T     LI+ Y K G+L  A  +F  I +
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 262 KDVVTWNAMI-------------------------------SGYAQHGKGEKALRLFDKM 290
            ++ +WN ++                               SGYA +G    A+R++  M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 291 -KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
            KD  M  + ITF  +L+ C+    VDLG Q  +  +  +G  +     + +VD+  + G
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQ-INGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 350 KLVEAVDLIKKMP 362
            + +A     +MP
Sbjct: 188 LIYDAKRYFDEMP 200


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/565 (40%), Positives = 351/565 (62%), Gaps = 16/565 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTM 76
           G   +A+E+FDK+ + D+VS+N+M+ C + N D    A + +Q+L +    +  A++ ++
Sbjct: 256 GSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD-FHEALELYQKLDMEGFKRTKATFVSI 314

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +      K +A+ R +   + E+   S     +A+++ Y +CG L++A ++F     +  
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 133 VAWTAMISGYMK--FGK-VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           VAW+ +I  Y    +GK    A K+FD + +++ + WNAMI  YV+N  A   +K+ R M
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM 434

Query: 190 IGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
            G  G++P+A +  +VL  C+ L  L   K +H  + +S L  +      LI+MY +CG 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           LE+A +LF   + K VV+W AM++ ++Q+G+  +AL LF +M  EG+KPD +T+ ++L  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C H G ++ G +YF  M   +G+A   DH+  MVDLLGR+G+L +A +L++ MPF+P P 
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPV 614

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
            + T L+ACR+H +L+L E AA  ++ L+P++ A  Y+ ++NIYAA   W+ VA +R  M
Sbjct: 615 AWMTFLTACRIHGKLELGEAAAERVYELDPSSTAP-YIAMSNIYAAHGMWEKVASVRKKM 673

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           +E  + K+PG S+IEV   +HEF SG + HP    I E+L  L   M+ AGYVPD +  L
Sbjct: 674 EERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVL 733

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKV-PLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           H V E  KE +LL+HSEK+AIAFGL+     G PIRV KNLRVC DCH ATK+I+ I  R
Sbjct: 734 HDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGR 793

Query: 548 EIIVRDTTRFHHF-KDGTCSCGDYW 571
           +II+RD  RFH F  DG CSCGDYW
Sbjct: 794 DIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 187/384 (48%), Gaps = 46/384 (11%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTMISGFVQKKNMAKAR 90
           QPD V++  +L C   +  DV       +R+      +DT   N +IS + +  ++  AR
Sbjct: 4   QPDNVTFLTVL-CSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 91  DLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELF-----------KVAPVKSVVAWTA 137
            +F +M   ++N VSW+AMI+ Y + G   +A+ L+            V  V  + A ++
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 138 MISG-------------------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           +  G                         Y +FG V  A+++F  + T++  +WNA+I  
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILA 182

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           + ++      L++ + M    ++PN+++  +V+ G S    L  G+++H  +  +    D
Sbjct: 183 HSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSD 241

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI+MY KCG   +A ++F +++++D+V+WN MI  Y Q+G   +AL L+ K+  
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDM 301

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG K    TFV++L AC+    +  G +   S + + G+ ++    T +V++  + G L 
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSA 376
           EA  +   M  +   A + TL+ A
Sbjct: 361 EARKVFNAMKNRDAVA-WSTLIGA 383



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 153/336 (45%), Gaps = 45/336 (13%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           A+IS Y K   +  A  +F+ M    +N+V+WNAMIA Y +N  + + L L   M   G+
Sbjct: 47  ALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL 106

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             +  +  SVL  CS   SL  G+++H  VF S L    +    L++MY + G + DA +
Sbjct: 107 GTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR 163

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---- 310
           +F  +Q +D  +WNA+I  ++Q G    ALR+F +MK + MKP+S T++ ++   +    
Sbjct: 164 MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEV 222

Query: 311 -------HAGLVDLGIQYFDS-------MVNDYGIAAKPDH---------------YTCM 341
                  HA +V  G   FDS       ++N YG                      +  M
Sbjct: 223 LPEGRKIHAEIVANG---FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVM 279

Query: 342 VDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
           +    + G   EA++L +K+    FK   A F ++L AC   K L        ++     
Sbjct: 280 IGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL 339

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            +       L N+YA     ++  ++  +MK  + V
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAV 375


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/563 (40%), Positives = 337/563 (59%), Gaps = 18/563 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWNTMIS 78
           G+L  A+ +FD  P+ DV+++N+++S       + V  F+  +RL   ++D     T ++
Sbjct: 167 GQLDTARGVFDVCPKADVITWNMIISAY-----NKVGKFEESRRLFLVMEDKQVLPTTVT 221

Query: 79  GFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
             +     +K +DL               E N V  +AMI  Y +CG++D A+ +F+   
Sbjct: 222 LVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN 281

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + +++WT ++SG+   G++D+A   FD+MP K+ V+W AMI GY+ ++  ++ L+L R 
Sbjct: 282 NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRN 341

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M    ++P+  ++ SVL  C+HL +L+LG+ +   + ++ +  D      LI MY KCGD
Sbjct: 342 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGD 401

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ A  +F E+ ++D  TW AMI G A +G GEKAL +F  M    + PD IT++ +L A
Sbjct: 402 VDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 461

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C H GLVD G +YF  M + +GI     HY C+VDLL RAG+L EA ++I+ MP K    
Sbjct: 462 CTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 521

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++G LL+ CRV++  D+AE     +  L P N A  YV L NIYAA K+W+D+  +R  M
Sbjct: 522 VWGALLAGCRVYRESDMAEMVVKQILELEPDNGA-VYVLLCNIYAACKRWNDLRELRQMM 580

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
            +  + K PG S IE+   VHEF +GDR HP+  +I  KL ++ + +KLAGY PD+    
Sbjct: 581 MDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVF 640

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
             + EE KE  +  HSEKLAIAFGLI  P G  IR+ KNLR+C DCH   K +S +  RE
Sbjct: 641 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNRE 700

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           +IVRD TRFHHFK G CSC DYW
Sbjct: 701 VIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 168/403 (41%), Gaps = 76/403 (18%)

Query: 3   VKTTVNWNSVLAG------FAKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSD 53
           +K  +N N VL           + G  + A+ LFD+IP+P++  +N M+   S +     
Sbjct: 42  IKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQL 101

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMIS 109
            V    +  +R    D  ++  +  GF +   +   R L   +     + N    +A++ 
Sbjct: 102 GVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQ 161

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            Y+ CGQLD A  +F V P   V+ W  +IS Y K GK + + +LF  M  K ++     
Sbjct: 162 MYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL----- 216

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
                                     P   +L  VL  CS L  L+ GK+VH  V    +
Sbjct: 217 --------------------------PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKV 250

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV------------------------- 264
             +      +I MY  CG+++ A  +F  +  +D+                         
Sbjct: 251 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 310

Query: 265 ------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
                 V+W AMI GY +  + ++AL LF  M+   +KPD  T V++L AC H G ++LG
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 370

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            ++  + ++   I         ++D+  + G + +A  + ++M
Sbjct: 371 -EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 412



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 6/290 (2%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           ++G    A +LFDE+P  NL  WN MI GY    + + G+ L   M+  G++P+  +   
Sbjct: 64  EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 123

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +  G +   +L+ G+Q+H  V K  L  +    T L+ MY  CG L+ A  +F    + D
Sbjct: 124 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 183

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V+TWN +IS Y + GK E++ RLF  M+D+ + P ++T V +L AC+    +  G +   
Sbjct: 184 VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVH 242

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           S V +  + +       M+D+    G++  A+ + + M  +   + + T++S       +
Sbjct: 243 SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS-WTTIVSGFTNLGEI 301

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           D+A     N F+  P      +  + + Y    ++ +   +  +M+  NV
Sbjct: 302 DVAR----NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV 347



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 152/363 (41%), Gaps = 49/363 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           MN +  ++W ++++GF    G++  A+  FDK+P+                         
Sbjct: 280 MNNRDIISWTTIVSGFT-NLGEIDVARNYFDKMPE------------------------- 313

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDK 119
                  KD  SW  MI G+++     +A +LF  M   N       M+S    C  L  
Sbjct: 314 -------KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG- 365

Query: 120 AVEL-------FKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           A+EL            +K+ +    A+I  Y K G VD AE +F EM  ++  TW AMI 
Sbjct: 366 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 425

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLC 230
           G   N   E  L +   M+   I P+  +   VL  C+H   +  G++   ++  +  + 
Sbjct: 426 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 485

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDK 289
            +      L+ +  + G L++A ++   +  K + + W A+++G   + + + A  +  +
Sbjct: 486 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 545

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           + +  ++PD+     LL     A      ++    M+ D GI   P     ++++ GR  
Sbjct: 546 ILE--LEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPG--CSLIEMNGRVH 601

Query: 350 KLV 352
           + V
Sbjct: 602 EFV 604


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/574 (40%), Positives = 351/574 (61%), Gaps = 42/574 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +WN++++G+ K   +   AQ LFD +P+ +V++                    
Sbjct: 69  MYARKVADWNAMVSGYWKWESE-GQAQWLFDVMPERNVIT-------------------- 107

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                       W  M++G+ + K++  AR  F  MPE++ VSW+AM+SGY + G  ++A
Sbjct: 108 ------------WTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 155

Query: 121 VELFK--VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           + LF   +   ++ V W AMIS YM+ G +D A KLF+ MP +N+VTWN+MIAGY +N  
Sbjct: 156 LRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQ 215

Query: 179 AEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
           +   ++L + MI    + P+  ++ SV+  C HL +L+LG  V + + ++ +    +   
Sbjct: 216 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHN 275

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            +I MY +CG +EDA ++F E+  +DVV++N +ISG+A HG G +A+ L   MK+ G++P
Sbjct: 276 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 335

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D +TF+ +L AC+HAGL++ G + F+S + D  I    DHY CMVDLLGR G+L +A   
Sbjct: 336 DRVTFIGVLTACSHAGLLEEGRKVFES-IKDPAI----DHYACMVDLLGRVGELEDAKRT 390

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           +++MP +P   ++G+LL+A R+HK+++L E AA  LF L P N+ G ++ L+NIYA+  +
Sbjct: 391 MERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNS-GNFILLSNIYASAGR 449

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W DV RIR +MK+  V K  G+SW+E G  +H+F   DR H     I++ L EL K+M+ 
Sbjct: 450 WKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMRE 509

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
           AGY+ D    L  V EE KE+++  HSEKLAI + L+    G  IRV KNLRVC DCH A
Sbjct: 510 AGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTA 569

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K IS +E R IIVRD  RFH F DG CSC DYW
Sbjct: 570 IKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 150/295 (50%), Gaps = 40/295 (13%)

Query: 87  AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
           A  R+  + M  +    W+AM+SGY +     +A  LF V P ++V+ WTAM++GY K  
Sbjct: 60  AFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK 119

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            ++ A + FD MP +++V+WNAM++GY +N  AE+ L+L   M+G               
Sbjct: 120 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLG--------------- 164

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
                                   +++     +IS Y + GDL+ A KLF  +  ++VVT
Sbjct: 165 ----------------------AYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT 202

Query: 267 WNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           WN+MI+GYAQ+G+   A+ LF +M   + + PD +T V+++ AC H G ++LG  +    
Sbjct: 203 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRF 261

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           + +  I      +  M+ +  R G + +A  + ++M  +   + + TL+S    H
Sbjct: 262 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAH 315


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/613 (39%), Positives = 356/613 (58%), Gaps = 54/613 (8%)

Query: 10  NSVLAGFAKQRGKLK-------DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           N++L+ + K+  +L         A++LFD++P+ D +++  M++  + N DD+  A + F
Sbjct: 188 NALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRN-DDLNGAREVF 246

Query: 63  QRLPIKDTASWNTMISGFVQ-------------------------------------KKN 85
           + +     A+WN MISG+V                                         
Sbjct: 247 EAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQ 306

Query: 86  MAKARDLFLAMPEKN-------SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           M K    ++   E N       SVS +A+I+ Y +  ++D+A ++F   PV++++ W A+
Sbjct: 307 MGKQMHAYILKNELNPNHSFCLSVS-NALITLYCKNNKVDEARKIFYAMPVRNIITWNAI 365

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +SGY+  G+++ A+  F+EMP KNL+T   MI+G  +N + ++GLKL + M   G  P  
Sbjct: 366 LSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCD 425

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            + +  L  CS L +L+ G+Q+H  +         +    +ISMY KCG +E A  +F+ 
Sbjct: 426 FAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVT 485

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +   D+V+WN+MI+   QHG G KA+ LFD+M  EG+ PD ITF+ +L AC+HAGLV+ G
Sbjct: 486 MPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKG 545

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
             YF+SM+  YGI    DHY  MVDL  RAG    A  +I  MP KP   ++  LL+ CR
Sbjct: 546 RHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCR 605

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +H  +DL   AA  LF L P N  G YV L+NIYA + +W+DVA++R  M++  V K P 
Sbjct: 606 IHGNMDLGIEAAEQLFKLMPQND-GTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPA 664

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SWIEV   VH F   D VHPE++S++  L++L   MK  GY+PD +F LH +  E KE 
Sbjct: 665 CSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEH 724

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
            L  HSEKLA+ FG++K+P    +RVFKN+R+CGDCH A K++S + +REIIVRD  RFH
Sbjct: 725 ALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFH 784

Query: 559 HFKDGTCSCGDYW 571
           HFK+G CSC DYW
Sbjct: 785 HFKNGDCSCRDYW 797



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 214/473 (45%), Gaps = 124/473 (26%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPI--KDTASWNTMISGFV 81
           A++LF++IP PD ++   +++  C L N +      + F   P+  +D+  +N MI+G+ 
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLE---LGREIFNGTPLYMRDSVFYNAMITGYA 123

Query: 82  QKKNMAKARDLFLAMPEKN----SVSWSAMISGYI-------ECGQLDKAV--------- 121
              +   A +LF AM   +      ++++++S  +       +CGQ+  AV         
Sbjct: 124 HNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVS 183

Query: 122 -----------------------------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAE 152
                                        +LF   P +  + WT MI+GY++   ++ A 
Sbjct: 184 SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           ++F+ M       WNAMI+GYV     ++ L L R M  LGI+ +  + ++++  C+++ 
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303

Query: 213 SLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           S Q+GKQ+H  + K+ L  +     +    LI++YCK   +++A K+F  +  ++++TWN
Sbjct: 304 SFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWN 363

Query: 269 AMISGY-------------------------------AQHGKGEKALRLFDKMKDEGMKP 297
           A++SGY                               AQ+G G++ L+LF +M+ +G +P
Sbjct: 364 AILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEP 423

Query: 298 DSITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDY---GIAAKPD--- 336
               F   L AC+           HA LV LG    +   ++M++ Y   G+    +   
Sbjct: 424 CDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVF 483

Query: 337 ---------HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 377
                     +  M+  LG+ G  V+A++L  +M  +   P    F T+L+AC
Sbjct: 484 VTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTAC 536



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 122/307 (39%), Gaps = 83/307 (27%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPT---------------------------------KNLV 164
           ++  Y K   V  A +LF+E+P                                  ++ V
Sbjct: 54  LLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS-HLSSLQLGKQVHQL 223
            +NAMI GY  N      L+L R M     RP+  + +SVL      + + Q   Q+H  
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 224 VFKSPL-CKDTTALTPLISMYCK--------CGDLEDACKLFLEIQRKDVVT-------- 266
           V K+ + C  ++ L  L+S+Y K        C  +  A KLF E+ ++D +T        
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 267 -----------------------WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
                                  WNAMISGY   G  ++AL L  KM+  G++ D IT+ 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC------MVDLLGRAGKLVEAVDL 357
            ++ AC + G   +G Q    ++ +      P+H  C      ++ L  +  K+ EA  +
Sbjct: 294 TIISACANVGSFQMGKQMHAYILKN---ELNPNHSFCLSVSNALITLYCKNNKVDEARKI 350

Query: 358 IKKMPFK 364
              MP +
Sbjct: 351 FYAMPVR 357



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 35/156 (22%)

Query: 188 MMIGLGIRPNASSLSSVLLGCS--HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           M   L IR  A+  +  L  CS    +S  L + VH  +  S        L  L+ MYCK
Sbjct: 1   MRNALDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCK 60

Query: 246 CGDLEDACKLFLEIQR---------------------------------KDVVTWNAMIS 272
             ++  A +LF EI                                   +D V +NAMI+
Sbjct: 61  SSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMIT 120

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           GYA +G G  AL LF  M+ +  +PD  TF ++L A
Sbjct: 121 GYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSA 156


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/583 (39%), Positives = 348/583 (59%), Gaps = 15/583 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  + W +++ G+ + RG +  A+ +F+++     V +N M+S   ++S   V AF+
Sbjct: 223 MPNKDDLTWTTMVVGYVR-RGDVGAARSVFEEVDGKFDVVWNAMISG-YVHSGMAVEAFE 280

Query: 61  FFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAM--------PEKNSVSWSAMI 108
            F+R+ ++    D  ++ +++S        A  + +   +        PE      +A++
Sbjct: 281 LFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALV 340

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           + Y +CG +  A  +F    +K VV+W  ++SGY++   +D A ++F+EMP KN ++W  
Sbjct: 341 TFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMV 400

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M++GYV   +AED LKL   M    ++P   + +  +  C  L +L+ GKQ+H  + +  
Sbjct: 401 MVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLG 460

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
                +A   LI+MY +CG +++A  +FL +   D V+WNAMIS   QHG G +AL LFD
Sbjct: 461 FEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFD 520

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M  EG+ PD I+F+ +L ACNH+GLVD G +YF+SM  D+GI    DHYT ++DLLGRA
Sbjct: 521 RMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRA 580

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G++ EA DLIK MPF+P P+I+  +LS CR    ++L   AA  LF + P +  G Y+ L
Sbjct: 581 GRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH-DGTYILL 639

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           +N Y+A   W D AR+R  M++  V K PG SWIE G  VH F  GD  HPE   +++ L
Sbjct: 640 SNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFL 699

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
           + +  +M+  GYVPD +  LH +    KE +L  HSE+LA+ FGL+ +P G  + V KNL
Sbjct: 700 EMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNL 759

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+C DCH A  ++S    REI+VRD  RFHHFKDG CSCG+YW
Sbjct: 760 RICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 178/406 (43%), Gaps = 52/406 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           V+  S++A +A    +L  A   FD +P  + D V +N ++S     S    A   F   
Sbjct: 89  VSATSLVAAYAAA-DRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 65  LPI----KDTASWNTMISGF-----VQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIEC 114
           L       D  S+  ++S       +  ++ A+     L      ++S  +A+++ Y++C
Sbjct: 148 LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKC 207

Query: 115 GQLDKAVELFKV---APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
              +   +  KV    P K  + WT M+ GY++ G V  A  +F+E+  K  V WNAMI+
Sbjct: 208 ESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMIS 267

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLC 230
           GYV +  A +  +L R M+   +  +  + +SVL  C+++     GK VH Q++   P  
Sbjct: 268 GYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNF 327

Query: 231 KDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA------------------ 269
               AL     L++ Y KCG++  A ++F  +  KDVV+WN                   
Sbjct: 328 VPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 270 -------------MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
                        M+SGY   G  E AL+LF+KM+ E +KP   T+   + AC   G + 
Sbjct: 388 EEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALK 447

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            G Q    +V   G          ++ +  R G + EA  +   MP
Sbjct: 448 HGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP 492


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/607 (40%), Positives = 359/607 (59%), Gaps = 50/607 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPI 67
           NSVL  + K  G  + A  +F+++P   V S+N M+S   LN+    +  A   F+ +P 
Sbjct: 203 NSVLNMYGKC-GDAETASTVFERMPVRSVSSWNAMVS---LNTHLGRMDLAESLFESMPG 258

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM-------PEK--------------------- 99
           +   SWN MI+G+ Q    AKA  LF  M       P++                     
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 100 ------------NSVSWSAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKF 145
                       NS   +A+IS Y + G ++ A  +   +     +V+++TA++ GY+K 
Sbjct: 319 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A ++F  M  +++V W AMI GY +N   ++ + L R MI  G  PN+ +L++VL
Sbjct: 379 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 438

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDV 264
             C+ L+ L  GKQ+H    +S L + ++    +I+MY + G    A ++F ++  RK+ 
Sbjct: 439 SVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 498

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           +TW +MI   AQHG+GE+A+ LF++M   G++PD IT+V +L AC+HAG V+ G +Y+D 
Sbjct: 499 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           + N++ IA +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSACRVHK  +
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           LAE AA  L +++P N+ G Y  +AN+Y+A  +W D ARI  + KE  V K  G+SW  +
Sbjct: 619 LAELAAEKLLSIDPNNS-GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHI 677

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
            + +H F + D VHP+  +++     + + +K AG+VPDL+  LH V +E+KE+LL  HS
Sbjct: 678 RSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHS 737

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLAIAFGLI  P  T +RV KNLRVC DCH A K IS +  REIIVRD TRFHHF+DG 
Sbjct: 738 EKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGL 797

Query: 565 CSCGDYW 571
           CSC DYW
Sbjct: 798 CSCKDYW 804



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 134/404 (33%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+DA+ LFD+IP                              L  ++  +WN+++S F
Sbjct: 79  GGLRDARRLFDEIP------------------------------LARRNVFTWNSLLSMF 108

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL-------------FKVA 127
            +   +A AR +F  MPE+++VSW+ M+ G    G+  +A++              F + 
Sbjct: 109 AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 168

Query: 128 PVKSVVAWT--------------------------AMISGYMKFGKVDLAEKLFDEMPT- 160
            V S  A T                          ++++ Y K G  + A  +F+ MP  
Sbjct: 169 NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVR 228

Query: 161 ------------------------------KNLVTWNAMIAGYVENSWAEDGLKLL-RMM 189
                                         +++V+WNAMIAGY +N      LKL  RM+
Sbjct: 229 SVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRML 288

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC--- 246
               + P+  +++SVL  C++L ++++GKQVH  + ++ +  ++     LIS Y K    
Sbjct: 289 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSV 348

Query: 247 ------------------------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
                                         GD+E A ++F  +  +DVV W AMI GY Q
Sbjct: 349 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 408

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +G+ ++A+ LF  M   G +P+S T  A+L  C     +D G Q
Sbjct: 409 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 452


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/561 (41%), Positives = 324/561 (57%), Gaps = 48/561 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           A   F  +   D  S NT+IS   +  +++  AR+LF  MP+++  +WSA++SGY   GQ
Sbjct: 82  ALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQ 141

Query: 117 LDKAVELFKV---------------------------------------------APVKS 131
            + A+ L++                                              A    
Sbjct: 142 PEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGD 201

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMI 190
            V W+A+   Y K G+VD A ++FD MP ++ V+W AM+  Y +     +G +L L M+ 
Sbjct: 202 AVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLR 261

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G+RPN  + + VL  C+  +    G+QVH  + KS       A + L+ MY KCGD+ 
Sbjct: 262 TRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMG 321

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A ++F  + + D+V+W A+ISGYAQ+G+ E+ALR FD     G+KPD +TFV +L AC 
Sbjct: 322 SAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACA 381

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           HAGLVD G++ F S+   Y I    DHY C++DLL R+G+   A  +I  M  KP   ++
Sbjct: 382 HAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLW 441

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
            +LL  CR+HK + LA  AA  LF + P N A  YV LANIYA++  +D+V  +R  M+ 
Sbjct: 442 ASLLGGCRIHKNVGLARRAAEALFEIEPENPA-TYVTLANIYASVGLFDEVEDVRRIMES 500

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + KMP  SWIEVG  VH F  GD+ HP+   I+  LK+L  +M   GYV D+EF LH 
Sbjct: 501 KGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHD 560

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V +E KEQ + +HSE+LA+AFG+I  P G+PI+VFKNLR+CGDCH A K IS I +R+II
Sbjct: 561 VEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDII 620

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD+ RFHHFKDG CSC DYW
Sbjct: 621 VRDSNRFHHFKDGICSCRDYW 641


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/579 (40%), Positives = 335/579 (57%), Gaps = 44/579 (7%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFL 94
           P  +  N +L  +  +   +  A      LP  D  S+NT+++   +  + +A AR LF 
Sbjct: 58  PSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFD 117

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKV---APVKS-------------------- 131
            MP ++  SWSA++S ++  GQ   A+ +++     P  S                    
Sbjct: 118 RMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARC 177

Query: 132 -------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                               V W+A+   Y KFG++D A  +FD MP +++V+W AM+  
Sbjct: 178 ARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDR 237

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +     +G +L   M+  GI PN  + + VL  C+  +S +LGKQVH  + KS     
Sbjct: 238 YFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDS 297

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             A + L+ MY K GD+  A ++F  + + D+V+W AMISGYAQ+G+ ++AL  FD +  
Sbjct: 298 CFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLS 357

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G +PD +TFV +L AC HAGLVD G+  F S+ + YGI    DHY C++DLL R+G   
Sbjct: 358 SGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFE 417

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            A D+I  MP KP   ++ +LL  CR+HK + LA +AA  LF + P N A  YV LANIY
Sbjct: 418 RAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPA-TYVTLANIY 476

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A++  +D+V  +R +M+   + KMP  SWIEVGT VH F  GD+ HP+   I+  LK+L 
Sbjct: 477 ASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLY 536

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            +M+  GYV D  F LH V +E K+Q + +HSE+LA+AFG+I  P G+PI+VFKNLR+CG
Sbjct: 537 VKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICG 596

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K IS I +REIIVRD+ RFHHFK+G+CSC DYW
Sbjct: 597 DCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/563 (40%), Positives = 337/563 (59%), Gaps = 18/563 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWNTMIS 78
           G+L  A+ +FD  P+ DV+++N+++S       + V  F+  +RL   ++D     T ++
Sbjct: 188 GQLDTARGVFDVCPKADVITWNMIISAY-----NKVGKFEESRRLFLVMEDKQVLPTTVT 242

Query: 79  GFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
             +     +K +DL               E N V  +AMI  Y +CG++D A+ +F+   
Sbjct: 243 LVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN 302

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + +++WT ++SG+   G++D+A   FD+MP K+ V+W AMI GY+ ++  ++ L+L R 
Sbjct: 303 NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRN 362

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M    ++P+  ++ SVL  C+HL +L+LG+ +   + ++ +  D      LI MY KCGD
Sbjct: 363 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGD 422

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ A  +F E+ ++D  TW AMI G A +G GEKAL +F  M    + PD IT++ +L A
Sbjct: 423 VDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 482

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C H GLVD G +YF  M + +GI     HY C+VDLL RAG+L EA ++I+ MP K    
Sbjct: 483 CTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 542

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++G LL+ CRV++  D+AE     +  L P N A  YV L NIYAA K+W+D+  +R  M
Sbjct: 543 VWGALLAGCRVYRESDMAEMVVKQILELEPDNGA-VYVLLCNIYAACKRWNDLRELRQMM 601

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
            +  + K PG S IE+   VHEF +GDR HP+  +I  KL ++ + +KLAGY PD+    
Sbjct: 602 MDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVF 661

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
             + EE KE  +  HSEKLAIAFGLI  P G  IR+ KNLR+C DCH   K +S +  RE
Sbjct: 662 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNRE 721

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           +IVRD TRFHHFK G CSC DYW
Sbjct: 722 VIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 168/403 (41%), Gaps = 76/403 (18%)

Query: 3   VKTTVNWNSVLAG------FAKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSD 53
           +K  +N N VL           + G  + A+ LFD+IP+P++  +N M+   S +     
Sbjct: 63  IKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQL 122

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMIS 109
            V    +  +R    D  ++  +  GF +   +   R L   +     + N    +A++ 
Sbjct: 123 GVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQ 182

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            Y+ CGQLD A  +F V P   V+ W  +IS Y K GK + + +LF  M  K ++     
Sbjct: 183 MYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL----- 237

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
                                     P   +L  VL  CS L  L+ GK+VH  V    +
Sbjct: 238 --------------------------PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKV 271

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV------------------------- 264
             +      +I MY  CG+++ A  +F  +  +D+                         
Sbjct: 272 ESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDK 331

Query: 265 ------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
                 V+W AMI GY +  + ++AL LF  M+   +KPD  T V++L AC H G ++LG
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG 391

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            ++  + ++   I         ++D+  + G + +A  + ++M
Sbjct: 392 -EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 433



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 6/290 (2%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           ++G    A +LFDE+P  NL  WN MI GY    + + G+ L   M+  G++P+  +   
Sbjct: 85  EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 144

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +  G +   +L+ G+Q+H  V K  L  +    T L+ MY  CG L+ A  +F    + D
Sbjct: 145 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 204

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V+TWN +IS Y + GK E++ RLF  M+D+ + P ++T V +L AC+    +  G +   
Sbjct: 205 VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVH 263

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           S V +  + +       M+D+    G++  A+ + + M  +   + + T++S       +
Sbjct: 264 SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS-WTTIVSGFTNLGEI 322

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           D+A     N F+  P      +  + + Y    ++ +   +  +M+  NV
Sbjct: 323 DVAR----NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV 368



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 152/363 (41%), Gaps = 49/363 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           MN +  ++W ++++GF    G++  A+  FDK+P+                         
Sbjct: 301 MNNRDIISWTTIVSGFT-NLGEIDVARNYFDKMPE------------------------- 334

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDK 119
                  KD  SW  MI G+++     +A +LF  M   N       M+S    C  L  
Sbjct: 335 -------KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG- 386

Query: 120 AVEL-------FKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           A+EL            +K+ +    A+I  Y K G VD AE +F EM  ++  TW AMI 
Sbjct: 387 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 446

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLC 230
           G   N   E  L +   M+   I P+  +   VL  C+H   +  G++   ++  +  + 
Sbjct: 447 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 506

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDK 289
            +      L+ +  + G L++A ++   +  K + + W A+++G   + + + A  +  +
Sbjct: 507 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 566

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           + +  ++PD+     LL     A      ++    M+ D GI   P     ++++ GR  
Sbjct: 567 ILE--LEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPG--CSLIEMNGRVH 622

Query: 350 KLV 352
           + V
Sbjct: 623 EFV 625


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/607 (40%), Positives = 359/607 (59%), Gaps = 50/607 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPI 67
           NSVL  + K  G  + A  +F+++P   V S+N M+S   LN+    +  A   F+ +P 
Sbjct: 97  NSVLNMYGKC-GDSETATTVFERMPVRSVSSWNAMVS---LNTHLGRMDLAESLFESMPD 152

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM-------PEK--------------------- 99
           +   SWN MI+G+ Q    AKA  LF  M       P++                     
Sbjct: 153 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 212

Query: 100 ------------NSVSWSAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKF 145
                       NS   +A+IS Y + G ++ A  +   +     +V+++TA++ GY+K 
Sbjct: 213 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 272

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A ++F  M  +++V W AMI GY +N   ++ + L R MI  G  PN+ +L++VL
Sbjct: 273 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 332

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDV 264
             C+ L+ L  GKQ+H    +S L + ++    +I+MY + G    A ++F ++  RK+ 
Sbjct: 333 SVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 392

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           +TW +MI   AQHG+GE+A+ LF++M   G++PD IT+V +L AC+HAG V+ G +Y+D 
Sbjct: 393 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 452

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           + N++ IA +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSACRVHK  +
Sbjct: 453 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 512

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           LAE AA  L +++P N+ G Y  +AN+Y+A  +W D ARI  + KE  V K  G+SW  +
Sbjct: 513 LAELAAEKLLSIDPNNS-GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHI 571

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
            + +H F + D VHP+  +++     + + +K AG+VPDL+  LH V +E+KE+LL  HS
Sbjct: 572 RSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHS 631

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLAIAFGLI  P  T +RV KNLRVC DCH A K IS +  REIIVRD TRFHHF+DG 
Sbjct: 632 EKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGL 691

Query: 565 CSCGDYW 571
           CSC DYW
Sbjct: 692 CSCKDYW 698



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 32/211 (15%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           + K G++  A  +F EMP ++ V+W  M+ G        + +K L  M   G  P   +L
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-------- 253
           ++VL  C+   +  +G++VH  V K  L         +++MY KCGD E A         
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 254 -----------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                                   LF  +  + +V+WNAMI+GY Q+G   KAL+LF +M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 291 KDE-GMKPDSITFVALLLACNHAGLVDLGIQ 320
             E  M PD  T  ++L AC + G V +G Q
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQ 212


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/593 (40%), Positives = 355/593 (59%), Gaps = 35/593 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           N+++  +AK  G + DA ++F+ +   DVVS+N M++     S +  AAF+ F+ +    
Sbjct: 298 NALIDTYAKC-GSMNDAVKVFNVMEFKDVVSWNAMVTG-YTQSGNFGAAFELFENMRKEN 355

Query: 66  -PIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA 120
            P+ D  +W+ +I+G+ Q+    +A D F  M     E NSV+  +++S     G L + 
Sbjct: 356 IPL-DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414

Query: 121 VELFKVAPVKSVVA----------------WTAMISGYMKFGKVDLAEKLFDEMP--TKN 162
           +E+   +  K +++                + A+I  Y K      A  +FD +P   +N
Sbjct: 415 MEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERN 474

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +VTW  MI GY +   + D LK+   MI     + PNA ++S +L+ C+HL++L++GKQ+
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQI 534

Query: 221 HQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           H  V +    + +       LI MY KCGD++ A  +F  + +++ V+W +M+SGY  HG
Sbjct: 535 HAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG 594

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
           +G++AL +FDKM+  G  PD I+F+ LL AC+H+G+VD G+ YFD M  DY + A  +HY
Sbjct: 595 RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHY 654

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            C++DLL R G+L +A   I++MP +P   I+  LLSACRVH  ++LAE+A   L N+  
Sbjct: 655 ACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKA 714

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
            N  G Y  ++NIYA  ++W DVARIR  MK++ + K PG SW++       F  GDR H
Sbjct: 715 END-GSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSH 773

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           P    I+  L+ L  R+K+ GYVP+  FALH V +E K  LL  HSEKLA+A+GL+    
Sbjct: 774 PLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSP 833

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           G PIR+ KNLRVCGDCH A  YIS I   EIIVRD++RFHHFK+G+CSCG YW
Sbjct: 834 GCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 180/398 (45%), Gaps = 71/398 (17%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------------------ 94
           +D    FD   R  I D  SWN++++  V+  N   A +LF                   
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260

Query: 95  -------------AMPE--------------KNSVSWSAMISGYIECGQLDKAVELFKVA 127
                        A+P+               ++   +A+I  Y +CG ++ AV++F V 
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGL 183
             K VV+W AM++GY + G    A +LF+ M  +N+    +TW+A+IAGY +   +++ L
Sbjct: 321 EFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEAL 380

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK------------ 231
              + MI  G  PN+ ++ S+L  C+ L +L  G ++H    K  L              
Sbjct: 381 DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDK 289
           D      LI MY KC   + A  +F  I R++  VVTW  MI GYAQ+G    AL++F +
Sbjct: 441 DLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSE 500

Query: 290 M--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY---TCMVDL 344
           M  K   + P++ T   +L+AC H   + +G Q    +   +    +P  Y    C++D+
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHH--EYEPSVYFVANCLIDM 558

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
             + G +  A ++   MP K     + +++S   +H R
Sbjct: 559 YSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGR 595



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLR 187
           +V    A+++ Y + G ++ A  +FDE+  K   ++++WN+++A +V+ S     L+L  
Sbjct: 183 NVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFS 242

Query: 188 MMI------GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            M           R +  S+ ++L  C+ L +L   K++H    ++    D      LI 
Sbjct: 243 EMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALID 302

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y KCG + DA K+F  ++ KDVV+WNAM++GY Q G    A  LF+ M+ E +  D IT
Sbjct: 303 TYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVIT 362

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           + A++      G     +  F  M+ D    ++P+  T ++ LL     L
Sbjct: 363 WSAVIAGYAQRGCSQEALDAFQQMILD---GSEPNSVT-IISLLSACASL 408



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 16/241 (6%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +++ Y+  G    A  + + +     V WN ++  +++    +  + +   M+  G +
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L   L  C  L S   G+ +H L+  +    +      L++MY +CG LEDA  +
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 256 FLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSITFVALL 306
           F EI RK   DV++WN++++ + +      AL LF +M      K    + D I+ V +L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 307 LACNHAGLVDL-GIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPF 363
            AC  A L  L  I+   S     G  A  D + C  ++D   + G + +AV +   M F
Sbjct: 267 PAC--ASLKALPQIKEIHSYAIRNGTFA--DAFVCNALIDTYAKCGSMNDAVKVFNVMEF 322

Query: 364 K 364
           K
Sbjct: 323 K 323



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 154/369 (41%), Gaps = 68/369 (18%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCI----LLNSDDVVAA 58
           + W++V+AG+A QRG  ++A + F ++     +P+ V+   +LS       L+    + A
Sbjct: 361 ITWSAVIAGYA-QRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHA 419

Query: 59  FDFFQRL-----------PIKDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWS 105
           +   + L             +D   +N +I  + + ++   AR +F ++P  E+N V+W+
Sbjct: 420 YSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWT 479

Query: 106 AMISGYIECGQLDKAVELFK--------VAPVKSVVAWTAM------------------- 138
            MI GY + G  + A+++F         VAP    ++   M                   
Sbjct: 480 VMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVT 539

Query: 139 ----------------ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                           I  Y K G VD A  +FD MP +N V+W +M++GY  +   ++ 
Sbjct: 540 RHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEA 599

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLIS 241
           L +   M   G  P+  S   +L  CSH   +  G     ++ +   +         +I 
Sbjct: 600 LDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVID 659

Query: 242 MYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-S 299
           +  +CG L+ A K   E+      V W A++S    H   E A    +K+ +   + D S
Sbjct: 660 LLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGS 719

Query: 300 ITFVALLLA 308
            T ++ + A
Sbjct: 720 YTLISNIYA 728


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/607 (40%), Positives = 359/607 (59%), Gaps = 50/607 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPI 67
           NSVL  + K  G  + A  +F+++P   V S+N M+S   LN+    +  A   F+ +P 
Sbjct: 203 NSVLNMYGKC-GDSETATTVFERMPVRSVSSWNAMVS---LNTHLGRMDLAESLFESMPD 258

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM-------PEK--------------------- 99
           +   SWN MI+G+ Q    AKA  LF  M       P++                     
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 100 ------------NSVSWSAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKF 145
                       NS   +A+IS Y + G ++ A  +   +     +V+++TA++ GY+K 
Sbjct: 319 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A ++F  M  +++V W AMI GY +N   ++ + L R MI  G  PN+ +L++VL
Sbjct: 379 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 438

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDV 264
             C+ L+ L  GKQ+H    +S L + ++    +I+MY + G    A ++F ++  RK+ 
Sbjct: 439 SVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 498

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           +TW +MI   AQHG+GE+A+ LF++M   G++PD IT+V +L AC+HAG V+ G +Y+D 
Sbjct: 499 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           + N++ IA +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSACRVHK  +
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           LAE AA  L +++P N+ G Y  +AN+Y+A  +W D ARI  + KE  V K  G+SW  +
Sbjct: 619 LAELAAEKLLSIDPNNS-GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHI 677

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
            + +H F + D VHP+  +++     + + +K AG+VPDL+  LH V +E+KE+LL  HS
Sbjct: 678 RSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHS 737

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLAIAFGLI  P  T +RV KNLRVC DCH A K IS +  REIIVRD TRFHHF+DG 
Sbjct: 738 EKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGL 797

Query: 565 CSCGDYW 571
           CSC DYW
Sbjct: 798 CSCKDYW 804



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 134/404 (33%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+DA+ LFD+IP                              L  ++  +WN+++S F
Sbjct: 79  GGLRDARRLFDEIP------------------------------LARRNVFTWNSLLSMF 108

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL-------------FKVA 127
            +   +A AR +F  MPE+++VSW+ M+ G    G+  +A++              F + 
Sbjct: 109 AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 168

Query: 128 PVKSVVAWT--------------------------AMISGYMKFGKVDLAEKLFDEMPT- 160
            V S  A T                          ++++ Y K G  + A  +F+ MP  
Sbjct: 169 NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR 228

Query: 161 ------------------------------KNLVTWNAMIAGYVENSWAEDGLKLL-RMM 189
                                         +++V+WNAMIAGY +N      LKL  RM+
Sbjct: 229 SVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRML 288

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC--- 246
               + P+  +++SVL  C++L ++++GKQVH  + ++ +  ++     LIS Y K    
Sbjct: 289 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSV 348

Query: 247 ------------------------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
                                         GD+E A ++F  +  +DVV W AMI GY Q
Sbjct: 349 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 408

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +G+ ++A+ LF  M   G +P+S T  A+L  C     +D G Q
Sbjct: 409 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 452


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/581 (39%), Positives = 349/581 (60%), Gaps = 27/581 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLP 66
           W +++ G+ +  G L  A+E+ D + +   +++N M+S  L +   +D +  F   + L 
Sbjct: 226 WTTLITGYVRN-GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 67  IK-DTASWNTMISG---------------FVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           ++ D +++ ++IS                ++ K  +   RD  L++        + +I+ 
Sbjct: 285 VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVG-------NTLITL 337

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G++D A ++F   PVK ++ W  ++SGY+  G+++ A+  F +MP KNL+TW  MI
Sbjct: 338 YWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMI 397

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           +G  +N + E  LKL   M   G  PN  + +  +  CS L +L+ G+Q+H  +      
Sbjct: 398 SGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHD 457

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
              +    +I+MY +CG +E A  +FL +   D V+WN+MI+   QHG G KA+ L+++M
Sbjct: 458 STLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQM 517

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             EG+ PD  TF+ +L AC+HAGLV+ G +YF+SM+ +YGIA   DHY  M+DL  RAGK
Sbjct: 518 LKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGK 577

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
             +A ++I  MPF+ +  I+  LL+ CR H  +DL   AA  LF L P +  G YV L+N
Sbjct: 578 FSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD-GTYVLLSN 636

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           +YA++ +W+DVAR R  M++  V K P  SW EV   VH F   D VHPE++SI+  L++
Sbjct: 637 MYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEK 696

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L   MK  GY+PD ++ LH +  E KE  L  HSEKLA+AFGL+K+P G  +RVFKNLR+
Sbjct: 697 LNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRI 756

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH A K++S +  REI+VRD  RFHHFK+G CSC +YW
Sbjct: 757 CGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 234/524 (44%), Gaps = 123/524 (23%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISGFVQK 83
           A++LFD+IPQPDV++   +++       ++  A + F   P+  +DT  +N MI+G+   
Sbjct: 67  ARKLFDEIPQPDVIARTTLITAYSA-LGNLKMAREIFNETPLDMRDTVFYNAMITGYSHM 125

Query: 84  KNMAKARDLFLAMPEKN----------------------------------------SVS 103
            +   A +LF AM   N                                           
Sbjct: 126 NDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAV 185

Query: 104 WSAMISGYIECGQ---------LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
            +A++S Y++C           +  A +LF   P ++   WT +I+GY++ G +  A ++
Sbjct: 186 LNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREI 245

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
            D M  +  + WNAMI+GY+ +   ED L L R M  LG++ + S+ +SV+  C+     
Sbjct: 246 LDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFF 305

Query: 215 QLGKQVHQLVFKSPLCKDTTAL----TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            LGKQVH  + K+ L  D   L      LI++Y K G ++ A K+F E+  KD++TWN +
Sbjct: 306 LLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTL 365

Query: 271 ISGY-------------------------------AQHGKGEKALRLFDKMKDEGMKPDS 299
           +SGY                               AQ+G GE+AL+LF++MK +G +P+ 
Sbjct: 366 LSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPND 425

Query: 300 ITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDY---GI--AAK----- 334
             F   + AC+           HA +V LG    +   ++M+  Y   GI  AA+     
Sbjct: 426 YAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLT 485

Query: 335 -----PDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLA 386
                P  +  M+  LG+ G  V+A++L ++M      P    F T+LSAC     ++  
Sbjct: 486 MPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEG 545

Query: 387 E--FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
              F +M L N   A     Y ++ +++    K+ D   +  SM
Sbjct: 546 NRYFNSM-LENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSM 588



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 145/341 (42%), Gaps = 55/341 (16%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLV 164
           +I  Y +      A +LF   P   V+A T +I+ Y   G + +A ++F+E P   ++ V
Sbjct: 54  LIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTV 113

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL------------LGCSHLS 212
            +NAMI GY   +     ++L R M     +P+  + +SVL             G  H +
Sbjct: 114 FYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGT 173

Query: 213 SLQLGKQVHQLVFKSPLC-----------------------------KDTTALTPLISMY 243
            ++ G ++   V  + L                              ++    T LI+ Y
Sbjct: 174 VVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGY 233

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            + GDL  A ++   +  +  + WNAMISGY  HG  E AL LF KM+  G++ D  T+ 
Sbjct: 234 VRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYT 293

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH------YTCMVDLLGRAGKLVEAVDL 357
           +++ AC   G   LG Q    ++ +      PD          ++ L  + GK+  A  +
Sbjct: 294 SVISACADGGFFLLGKQVHAYILKN---ELNPDRDFLLSVGNTLITLYWKYGKVDGARKI 350

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNL 396
             +MP K     + TLLS      R++ A+  FA M   NL
Sbjct: 351 FYEMPVK-DIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL 390



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 45/163 (27%)

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT--- 266
           +LSS  L + VH  V  S        +  LI +Y K  D   A KLF EI + DV+    
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 267 ------------------------------WNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
                                         +NAMI+GY+    G  A+ LF  M+    +
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 297 PDSITFVALLLACN------------HAGLVDLGIQYFDSMVN 327
           PD  TF ++L A              H  +V  GI+ F +++N
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLN 187


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 344/584 (58%), Gaps = 41/584 (7%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTM------ 76
           A ++F  IP P+V  +NI++   L N + +  A  F+ R+ I    +  ++ T+      
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLEN-NKLFKAIYFYGRMVIDARPNKFTYPTLFKACSV 144

Query: 77  ---------ISGFVQKKNMAK--------------------ARDLFLAMPEKNSVSWSAM 107
                    I G V K  +                      AR +F +  E + V W+ M
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTM 203

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           I GY++CG L+ A  LF   PVK++ +W  MI+G  K G +  A KLFDEM  ++ ++W+
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWS 263

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +M+ GY+     ++ L++ + M     RP    LSSVL  CS++ ++  G+ VH  + ++
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            +  D    T L+ MY KCG L+   ++F E++ +++ TWNAMI G A HG+ E AL LF
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELF 383

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            K+++  MKP+ IT V +L AC HAG VD G++ F +M   YG+  + +HY CMVDLLGR
Sbjct: 384 SKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGR 443

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           +G   EA DLI  MP KP  A++G LL ACR+H   DLAE     L  L P N +G YV 
Sbjct: 444 SGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQN-SGRYVL 502

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+NIYA + ++DDV++IR  MK+  +  +PG S +++   VHEF+ GD  HP++  I+ K
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           LK +++R+++AG+ PD    L  + EE KE  + +HSEKLAIAFGLI    G  I + KN
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKN 622

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVC DCH ATK IS I  REIIVRD  R+HHFK+GTCSC D+W
Sbjct: 623 LRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 170/373 (45%), Gaps = 59/373 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+DA+++F    + DVV +N M+    L    + AA   F ++P+K+  SWN MI+G 
Sbjct: 181 GRLEDARKMFYS-GESDVVCWNTMIDG-YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL 238

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----VK 130
            +  N+  AR LF  M E++ +SWS+M+ GYI  G+  +A+E+F+        P    + 
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 131 SVVA------------W-----------------TAMISGYMKFGKVDLAEKLFDEMPTK 161
           SV+A            W                 TA++  Y K G++D+  ++F+EM  +
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER 358

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            + TWNAMI G   +  AED L+L   +    ++PN  +L  VL  C+H   +  G ++ 
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISG 273
           Q +      ++   + P +  Y    DL     LF E +        + +   W A++  
Sbjct: 419 QTM------REFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGA 472

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
              HG  + A R+  K+  E    +S  +V L       G  D  +     ++ D GI  
Sbjct: 473 CRIHGNFDLAERV-GKILLELEPQNSGRYVLLSNIYAKVGRFD-DVSKIRKLMKDRGIKT 530

Query: 334 KPDHYTCMVDLLG 346
            P     +VDL G
Sbjct: 531 VPG--VSIVDLNG 541



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F   D A K+F  +P  N+  WN +I G +EN+     +     M+ +  RPN  +  ++
Sbjct: 80  FSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTL 138

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
              CS   ++Q G+Q+H  V K  +  D    +  I MY   G LEDA K+F   +  DV
Sbjct: 139 FKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGE-SDV 197

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V WN MI GY + G  E A  LF +M  + +   ++    L    N      L    FD 
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKL----FDE 253

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
           M     I+     ++ MVD    AG+  EA+++ ++M     +P   I  ++L+AC
Sbjct: 254 MSERDEIS-----WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAAC 304


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/519 (44%), Positives = 320/519 (61%), Gaps = 2/519 (0%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           ++  A   F  +  KD   WN++I G+ +   +  A  LF  MPE+++ SW+ ++ G  +
Sbjct: 162 EIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSK 221

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           CG+++ A +LF   P +++V+W AMI+GYMK G  D A +LF +MP  +LVTWN MIAGY
Sbjct: 222 CGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGY 281

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N    D +K+  MM+ LG RP+ ++L SVL   S L+ L  G+ +H  + K+    D 
Sbjct: 282 ELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDG 341

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T LI MY KCG +E A  +F  IQ+K V  W A+I G   HG    AL LF +M   
Sbjct: 342 ILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKT 401

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KP++I F+ +L ACNHAGLVD G QYFD M+N+Y I    +HY C+VD+L RAG L E
Sbjct: 402 GLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEE 461

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A + I+ MP  P   I+ +LL   R H ++D+ E+AA  +  + P    GCY+ L+N+YA
Sbjct: 462 AKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP-ETIGCYILLSNMYA 520

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A   W+ V+ +R  M +    K PG S +E    +HEF  GD  HP+   I+ K+ E+++
Sbjct: 521 ASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKE 580

Query: 474 RMKLAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           ++K  G+VPD    L  + GE+ KE  L  HSE+LAIAFGLI V  G PIR+ KNLRVC 
Sbjct: 581 KLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCN 640

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH  TK +S I  REIIVRD  RFHHFK+G+CSC DYW
Sbjct: 641 DCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 10/219 (4%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           K   +  A  +FD +  ++L+ WN +I  YVEN ++ DG+ L   ++   + P+  +L  
Sbjct: 59  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPC 117

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           V+ GC+ L  +Q GKQ+H L  K     D      L++MY KCG+++ A K+F  +  KD
Sbjct: 118 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 177

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV WN++I GYA+ G+ + AL+LF++M +     D+ ++  L+   +  G V+   + FD
Sbjct: 178 VVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESARKLFD 233

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            M     ++     +  M++   ++G    A++L  +MP
Sbjct: 234 QMPCRNLVS-----WNAMINGYMKSGDFDSALELFYQMP 267



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 16/291 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +W  ++ G +K  GK++ A++LFD++P  ++VS+N M++   + S D  +A +
Sbjct: 204 MPERDAFSWTVLVDGLSKC-GKVESARKLFDQMPCRNLVSWNAMING-YMKSGDFDSALE 261

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS-------VSWSAMISGYIE 113
            F ++PI D  +WN MI+G+        A  +F  M +  S       VS  + +SG   
Sbjct: 262 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 114 CGQ---LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
            G+   +   +E  K       +  T++I  Y K G ++ A  +F  +  K +  W A+I
Sbjct: 322 LGKGRWIHSYME--KNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 379

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            G   +  A   L L   M   G++PNA     VL  C+H   +  G+Q   ++      
Sbjct: 380 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 439

Query: 231 KDTTA-LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 279
           + T      L+ + C+ G LE+A      +    + V W +++ G   HGK
Sbjct: 440 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 490


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 359/616 (58%), Gaps = 51/616 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V +N+++A  A Q G   +A E + ++ + D V+ N      +LN+     A +  +
Sbjct: 293 RDVVVYNALIAALA-QHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKALEAGK 350

Query: 64  RLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
            +           D    N +IS + +  ++ KAR+LF  MP+++ +SW+A+I+GY    
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410

Query: 116 QLDKAVELFK------VAPVK-------SVVAWT-------------------------- 136
              +A+ L+K      V P +       S  A +                          
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLAN 470

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+++ Y + G +  A+ +F+    +++++WN+MIAG+ ++   E   KL + M    + P
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  + +SVL GC +  +L+LGKQ+H  + +S L  D      LI+MY +CG L+DA  +F
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLV 315
             +Q +DV++W AMI G A  G+  KA+ LF +M++EG +P D  TF ++L ACNHAGLV
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLV 650

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G Q F SM ++YG+    +HY C+V LLGRA +  EA  LI +MPF P  A++ TLL 
Sbjct: 651 LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLG 710

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+H  + LAE AA N   LN  N A  Y+ L+N+YAA  +WDDVA+IR  M+   + K
Sbjct: 711 ACRIHGNIALAEHAANNALKLNARNPA-VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 769

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG SWIEV  ++HEF + DR HPE   I+ +LK L   M+ AGY PD +  LH +G+  
Sbjct: 770 EPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAH 829

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           +E  L  HSE+LAIA+GLIK P GTPIR+FKNLR+CGDCH A+K+IS +  REII RD+ 
Sbjct: 830 QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 889

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH FK+G CSC DYW
Sbjct: 890 RFHSFKNGKCSCEDYW 905



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 198/405 (48%), Gaps = 48/405 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCI------- 48
           M  +  ++WNS+++ +A+Q G  K A +LF+++      P+ ++Y +I+ +C        
Sbjct: 88  MPRRDVISWNSLISCYAQQ-GFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELEN 146

Query: 49  ------------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                             + NS         D+  A   F  +  +D  S+NTM+  + Q
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVA 134
           K  + +   LF  M  +    + V++  ++  +     LD+   + K+   +     +  
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA+++  ++ G VD A++ F  +  +++V +NA+IA   ++    +  +    M   G+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             N ++  S+L  CS   +L+ GK +H  + +     D      LISMY +CGDL  A +
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF  + ++D+++WNA+I+GYA+     +A+RL+ +M+ EG+KP  +TF+ LL AC ++  
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
              G    + ++   GI +       ++++  R G L+EA ++ +
Sbjct: 447 YADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 173/335 (51%), Gaps = 10/335 (2%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           PD+   N++++ + +    V+ A   F+ +P +D  SWN++IS + Q+    KA  LF  
Sbjct: 60  PDIFLSNLLIN-MYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 118

Query: 96  MPEK----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGK 147
           M       N +++ ++++      +L+       ++ K    +      +++S Y K G 
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A ++F  +  +++V++N M+  Y + ++ ++ L L   M   GI P+  +  ++L  
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDA 238

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
            +  S L  GK++H+L  +  L  D    T L++M  +CGD++ A + F  I  +DVV +
Sbjct: 239 FTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVY 298

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NA+I+  AQHG   +A   + +M+ +G+  +  T++++L AC+ +  ++ G +   S ++
Sbjct: 299 NALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHIS 357

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + G ++       ++ +  R G L +A +L   MP
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y+K   V  A ++F EMP +++++WN++I+ Y +  + +   +L   M   G  PN
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  S+L  C   + L+ GK++H  + K+   +D      L+SMY KCGDL  A ++F 
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFA 187

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I  +DVV++N M+  YAQ    ++ L LF +M  EG+ PD +T++ LL A     ++D 
Sbjct: 188 GISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE 247

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +     V + G+ +     T +V +  R G +  A    K +  +    ++  L++A 
Sbjct: 248 GKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAAL 305

Query: 378 RVH 380
             H
Sbjct: 306 AQH 308



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 120/232 (51%), Gaps = 9/232 (3%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L  C+    L   K++H  + ++ +  D      LI+MY KC  + DA ++F E+ R+
Sbjct: 32  ALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRR 91

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           DV++WN++IS YAQ G  +KA +LF++M++ G  P+ IT++++L AC     ++ G +  
Sbjct: 92  DVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG-KKI 150

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-FGTLLS--ACRV 379
            S +   G    P     ++ + G+ G L  A  +   +   P+  + + T+L   A + 
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGI--SPRDVVSYNTMLGLYAQKA 208

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI-RLSMKE 430
           + +  L  F  M+   ++P      Y+ L + +      D+  RI +L+++E
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVT--YINLLDAFTTPSMLDEGKRIHKLTVEE 258



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 64/334 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY--------------- 41
           M  +  ++WN+++AG+A++  +  +A  L+ ++     +P  V++               
Sbjct: 391 MPKRDLISWNAIIAGYARREDR-GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD 449

Query: 42  ---------------NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                          N  L+  L+N       ++ A + F+    +D  SWN+MI+G  Q
Sbjct: 450 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ 509

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMISG--YIECGQLDKAV--ELFKVAPVKSVVA 134
             +   A  LF  M     E +++++++++SG    E  +L K +   + +      V  
Sbjct: 510 HGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNL 569

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I+ Y++ G +  A  +F  +  +++++W AMI G  +       ++L   M   G 
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF 629

Query: 195 R-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-CKCGDLEDA 252
           R P+ S+ +S+L  C+H   +  G Q    +F S   +    + P I  Y C  G L  A
Sbjct: 630 RPPDGSTFTSILSACNHAGLVLEGYQ----IFSS--MESEYGVLPTIEHYGCLVGLLGRA 683

Query: 253 CKLFLEIQR--------KDVVTWNAMISGYAQHG 278
            + F E +          D   W  ++     HG
Sbjct: 684 -RRFQEAETLINQMPFPPDAAVWETLLGACRIHG 716


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/597 (39%), Positives = 349/597 (58%), Gaps = 55/597 (9%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           + +A++LFD++P  D +S+  +++  + N +D+ AA +F      K   +WN MISG+  
Sbjct: 208 MAEARKLFDEMPNRDELSWTTIITGYVKN-NDLDAAKEFLNGTSKKLGVAWNAMISGYAH 266

Query: 83  KKNMAKARDLF------------------------------------------------L 94
           +    +A ++F                                                +
Sbjct: 267 RGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDV 326

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
           AMP  N     A+I+ Y +CG++D A E+F   P + +V+W  ++SGY+    +D A+  
Sbjct: 327 AMPVNN-----ALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSF 381

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F+EMP KN+++W  MI+G  +  +AE+ LK    M   G  P   + +  ++ CS L SL
Sbjct: 382 FNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSL 441

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + G+Q+H  V +       +A   LI+MY +CG ++ A  LF+ +   D ++WNAMI+  
Sbjct: 442 KHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAAL 501

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            QHG+G +A+ LF++M  EG+ PD I+F+ ++ AC+HAGLV  G +YFDSM N YG+   
Sbjct: 502 GQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPD 561

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY  ++DLL RAGK  EA ++++ MPF+P   I+  LL+ CR+H  +DL   AA  LF
Sbjct: 562 EEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLF 621

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L P +  G YV L+N+YA   +W+D+A++R  M++  V K PG SWIEV   VH F  G
Sbjct: 622 ELKPQH-DGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVG 680

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  HPE+  I+  L++L   M+  GYVPD +  LH V  ++KE  L  HSEKLA+A+G +
Sbjct: 681 DANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFM 740

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K+P G  +RVFKNLR+CGDCH A K++S +  REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 741 KLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 184/430 (42%), Gaps = 88/430 (20%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTM 76
           +  KL  A+ LFD+IPQPD+V+   +++     + D+  +   F   P+  +D+  +N M
Sbjct: 60  KSSKLNYARYLFDEIPQPDIVARTTLIAA-YSAAGDLKLSRKIFSDTPLGMRDSVFYNAM 118

Query: 77  ISGFVQKKNMAKARDLFLAMPEKN------------------------------------ 100
           I+ +    +   A +LF  M   N                                    
Sbjct: 119 ITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG 178

Query: 101 ----SVSWSAMISGYIECGQ---------LDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
               +   +A+IS Y++C           + +A +LF   P +  ++WT +I+GY+K   
Sbjct: 179 TGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNND 238

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +D A++  +    K  V WNAMI+GY       +  ++ R MI   I+ +  + +SV+  
Sbjct: 239 LDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISV 298

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTP----LISMYCKCGDLEDACKLFLEIQRKD 263
           C++    +LGK++H    K+          P    LI+ Y KCG ++ A ++F ++  +D
Sbjct: 299 CANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERD 358

Query: 264 VVTWNAMISGY-------------------------------AQHGKGEKALRLFDKMKD 292
           +V+WN ++SGY                               AQ G  E+AL+ F++MK 
Sbjct: 359 LVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKL 418

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G +P    F   +++C+  G +  G Q    +V  YG  +       ++ +  R G + 
Sbjct: 419 QGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVD 477

Query: 353 EAVDLIKKMP 362
            A  L   MP
Sbjct: 478 AAHCLFINMP 487



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 131/303 (43%), Gaps = 48/303 (15%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLV 164
           +I  Y +  +L+ A  LF   P   +VA T +I+ Y   G + L+ K+F + P   ++ V
Sbjct: 54  LIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSV 113

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQL 223
            +NAMI  Y  N      ++L   M     RP+  + +SVL   + ++  +   +Q+H  
Sbjct: 114 FYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCA 173

Query: 224 VFKSPLCKDTTALTPLISMYCKCGD---------LEDACKLFLEIQRKDV---------- 264
           V KS     T+ L  LIS Y KC           + +A KLF E+  +D           
Sbjct: 174 VVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGY 233

Query: 265 ---------------------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
                                V WNAMISGYA  G   +A  +F KM    ++ D  TF 
Sbjct: 234 VKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFT 293

Query: 304 ALLLACNHAGLVDLGIQ----YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +++  C +AG   LG +    +  ++ N     A P +   ++    + GK+  A ++  
Sbjct: 294 SVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVN-NALITFYWKCGKVDIAQEIFN 352

Query: 360 KMP 362
           KMP
Sbjct: 353 KMP 355



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 55/306 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN +L+G+   R  + +A+  F+++P+ +++S+ IM+S  L        A  
Sbjct: 354 MPERDLVSWNIILSGYVNVRC-MDEAKSFFNEMPEKNILSWIIMISG-LAQIGFAEEALK 411

Query: 61  FFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           FF R+ ++     D A    +IS  V   ++   R L   +     E +  + +A+I+ Y
Sbjct: 412 FFNRMKLQGFEPCDYAFAGAIISCSVL-GSLKHGRQLHAQVVRYGYESSLSAGNALITMY 470

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
             CG +D A  LF   P    ++W AMI+   + G+   A +LF+EM  +          
Sbjct: 471 ARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKE---------- 520

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VHQLVFKS 227
                                GI P+  S  +V+  CSH   ++ G++    +H +   +
Sbjct: 521 ---------------------GILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVN 559

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK----GEK 282
           P   D      +I + C+ G   +A ++   +        W A+++G   HG      E 
Sbjct: 560 P---DEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEA 616

Query: 283 ALRLFD 288
           A RLF+
Sbjct: 617 AERLFE 622



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 69/181 (38%), Gaps = 47/181 (25%)

Query: 194 IRPNASSLSSVLLGCSHLS--SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           IR  A+   S+L  C   S  S  L + VH  +  S        L  LI +Y K   L  
Sbjct: 7   IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNY 66

Query: 252 ACKLFLEIQRKDVVT---------------------------------WNAMISGYAQHG 278
           A  LF EI + D+V                                  +NAMI+ Y+ + 
Sbjct: 67  ARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNH 126

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLA----------CN--HAGLVDLGIQYFDSMV 326
            G  A+ LF  M+ +  +PD+ TF ++L A          C   H  +V  G  +  S++
Sbjct: 127 DGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVL 186

Query: 327 N 327
           N
Sbjct: 187 N 187


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 343/584 (58%), Gaps = 41/584 (7%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTM------ 76
           A ++F  IP P+V  +NI++   L N + +  A  F+ R+ I    +  ++ T+      
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLEN-NKLFKAIYFYGRMVIDARPNKFTYPTLFKACSV 144

Query: 77  ---------ISGFVQKKNMAK--------------------ARDLFLAMPEKNSVSWSAM 107
                    I G V K  +                      AR +F +  E + V W+ M
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTM 203

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           I GY++CG L+ A  LF   PVK++ +W  MI+G  K G +  A KLFDEM  ++ ++W+
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWS 263

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +M+ GY+     ++ L++ + M     RP    LSSVL  CS++ ++  G+ VH  + ++
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            +  D    T L+ MY KCG L+   ++F E++ +++ TWNAMI G A HG+ E AL LF
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELF 383

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            K+++  MKP+ IT V +L AC HAG VD G++ F +M   YG+  + +HY CMVDLLGR
Sbjct: 384 SKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGR 443

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           +G   EA DLI  MP KP  A++G LL ACR+H   DLAE     L  L P N +G YV 
Sbjct: 444 SGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQN-SGRYVL 502

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+NIYA + ++DDV++IR  MK   +  +PG S +++   VHEF+ GD  HP++  I+ K
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           LK +++R+++AG+ PD    L  + EE KE  + +HSEKLAIAFGLI    G  I + KN
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKN 622

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVC DCH ATK IS I  REIIVRD  R+HHFK+GTCSC D+W
Sbjct: 623 LRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 148/313 (47%), Gaps = 55/313 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+DA+++F    + DVV +N M+    L    + AA   F ++P+K+  SWN MI+G 
Sbjct: 181 GRLEDARKMFYS-GESDVVCWNTMIDG-YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL 238

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----VK 130
            +  N+  AR LF  M E++ +SWS+M+ GYI  G+  +A+E+F+        P    + 
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 131 SVVA------------W-----------------TAMISGYMKFGKVDLAEKLFDEMPTK 161
           SV+A            W                 TA++  Y K G++D+  ++F+EM  +
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER 358

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            + TWNAMI G   +  AED L+L   +    ++PN  +L  VL  C+H   +  G ++ 
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISG 273
           Q +      ++   + P +  Y    DL     LF E +        + +   W A++  
Sbjct: 419 QTM------REFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGA 472

Query: 274 YAQHGKGEKALRL 286
              HG  + A R+
Sbjct: 473 CRIHGNFDLAERV 485



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F   D A K+F  +P  N+  WN +I G +EN+     +     M+ +  RPN  +  ++
Sbjct: 80  FSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTL 138

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
              CS   ++Q G+Q+H  V K  +  D    +  I MY   G LEDA K+F   +  DV
Sbjct: 139 FKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGE-SDV 197

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V WN MI GY + G  E A  LF +M  + +   ++    L    N      L    FD 
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKL----FDE 253

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
           M     I+     ++ MVD    AG+  EA+++ ++M     +P   I  ++L+AC
Sbjct: 254 MSERDEIS-----WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAAC 304



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 23/274 (8%)

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--CGDLEDACKLFLEIQRK 262
           L     ++SLQ   Q+H LV +S   +D      L+  Y      + + A K+F  I   
Sbjct: 37  LFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNP 96

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +V  WN +I G  ++ K  KA+  + +M  +  +P+  T+  L  AC+ A  V  G Q  
Sbjct: 97  NVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIH 155

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI--FGTLLSACRVH 380
             +V  +GI +     +  + +    G+L +A    +KM +  +  +  + T++     +
Sbjct: 156 GHVVK-HGIGSDVHIKSAGIQMYASFGRLEDA----RKMFYSGESDVVCWNTMIDG---Y 207

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
            +  + E AA  LF   P    G +  + N  A      D  ++   M E + +     S
Sbjct: 208 LKCGVLE-AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI-----S 261

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
           W    ++V  + S  R + E + I ++++  E R
Sbjct: 262 W---SSMVDGYISAGR-YKEALEIFQQMQREETR 291


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/585 (40%), Positives = 360/585 (61%), Gaps = 19/585 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-DDVVAAF 59
           M V++  +WN++++ +  Q G++  A  +F+ + +  +VS+N +++    N  DD+  A 
Sbjct: 224 MKVRSESSWNAMVSLYTHQ-GRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDM--AL 280

Query: 60  DFFQRLPIK-----DTASWNTMISGFVQKKNMAKARD-----LFLAMPEKNSVSWSAMIS 109
            FF R+        D  +  +++S     + +   +      L   MP  + +  +A+IS
Sbjct: 281 KFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIM-NALIS 339

Query: 110 GYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            Y + G ++ A  +   A V   +V+++TA++ GY+K G    A ++FD M  ++++ W 
Sbjct: 340 TYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWT 399

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AMI GY +N   ++ ++L R MI  G  PN+ +L++VL  C+ L+ L  GKQ+H    +S
Sbjct: 400 AMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRS 459

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRL 286
              +  +    +I++Y + G +  A ++F +I  RK+ VTW +MI   AQHG GE+A+ L
Sbjct: 460 LQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVL 519

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F++M   G+KPD +T++ +  AC HAG +D G +Y++ M+N++GI  +  HY CMVDLL 
Sbjct: 520 FEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLA 579

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG L EA + I++MP  P   ++G+LL+ACRV K  DLAE AA  L +++P N+ G Y 
Sbjct: 580 RAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNS-GAYS 638

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            LAN+Y+A  +W+D ARI    K+  V K  G+SW  V + VH F + D +HP+  +I +
Sbjct: 639 ALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICK 698

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
           K  E+ + +K AG+VPDL   LH V +E+KE+LL  HSEKLAIAFGLI  P  T +R+ K
Sbjct: 699 KAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMK 758

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLRVC DCH A K+IS +  REIIVRD TRFHHF+DG CSC DYW
Sbjct: 759 NLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 177/365 (48%), Gaps = 56/365 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN-SDDVVAAFDFF 62
           +    WNS+L+ +AK  G+L DA+ +F ++P+ D VS+ +M+  + LN +     A   F
Sbjct: 95  RNAFTWNSLLSMYAKS-GRLADARVVFAQMPERDAVSWTVMV--VGLNRAGRFWDAVKTF 151

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARD-------------LFLAMPEKNSVSWSAMIS 109
             +  +  A    M++  +      +AR              L   +P  NSV +     
Sbjct: 152 LDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYM---- 207

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            Y +CG  + A  +F+   V+S  +W AM+S Y   G++DLA  +F+ M  +++V+WNA+
Sbjct: 208 -YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266

Query: 170 IAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           IAGY +N   +  LK   RM+    + P+  +++SVL  C++L  L++GKQ+H  + ++ 
Sbjct: 267 IAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTG 326

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKL--------------------------------- 255
           +   +  +  LIS Y K G +E A ++                                 
Sbjct: 327 MPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DV+ W AMI GY Q+G+ ++A+ LF  M   G +P+S T  A+L AC     +
Sbjct: 387 FDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYL 446

Query: 316 DLGIQ 320
             G Q
Sbjct: 447 GYGKQ 451



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 133/270 (49%), Gaps = 17/270 (6%)

Query: 115 GQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           G   +A  LF   P   ++   W +++S Y K G++  A  +F +MP ++ V+W  M+ G
Sbjct: 78  GCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVG 137

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
                   D +K    M+G G+ P+   L++VL  C+   +  +G++VH  V K  L   
Sbjct: 138 LNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSC 197

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 ++ MY KCGD E A  +F  ++ +   +WNAM+S Y   G+ + AL +F+ M++
Sbjct: 198 VPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEE 257

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-------CMVDLL 345
             +    +++ A++   N  GL D+ +++F  M+    +  +PD +T       C    +
Sbjct: 258 RSI----VSWNAIIAGYNQNGLDDMALKFFSRMLTASSM--EPDEFTVTSVLSACANLRM 311

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
            + GK + +  L   MP+  Q  I   L+S
Sbjct: 312 LKMGKQMHSYILRTGMPYSSQ--IMNALIS 339


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/566 (43%), Positives = 340/566 (60%), Gaps = 16/566 (2%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+ A+ +FDK    D VS+  +++   ++   V  A   F  +P KD  SWN MI+
Sbjct: 174 QVGELRHARLVFDKSTLRDAVSFTALITG-YVSEGHVDDARRLFDEIPAKDVVSWNAMIA 232

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPV-------- 129
           G+VQ     +A   F  M E + S + S M+S    CG L +++EL K            
Sbjct: 233 GYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHL-RSLELGKWIGSWVRDRGFG 291

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           K++    A++  Y K G++  A KLFD M  K+++ WN MI GY   S  E+ L L  +M
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVM 351

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCK 245
           +   + PN  +  +VL  C+ L +L LGK VH  + K    +    + +  T +I MY K
Sbjct: 352 LRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAK 411

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           CG +E A ++F  +  + + +WNAMISG A +G  E+AL LF++M +EG +PD ITFV +
Sbjct: 412 CGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGV 471

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC  AG V+LG +YF SM  DYGI+ K  HY CM+DLL R+GK  EA  L+  M  +P
Sbjct: 472 LSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEP 531

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
             AI+G+LL+ACR+H +++  E+ A  LF L P N+ G YV L+NIYA   +WDDVA+IR
Sbjct: 532 DGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENS-GAYVLLSNIYAGAGRWDDVAKIR 590

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             + +  + K+PG + IE+  VVHEF  GD+ HP+  +I   L E+++ ++  G+VPD  
Sbjct: 591 TKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTS 650

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
             L+ + EE KE  L  HSEKLAIAFGLI    G+ IR+ KNLRVC +CH ATK IS I 
Sbjct: 651 EVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIF 710

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            REII RD  RFHHFKDG CSC D W
Sbjct: 711 NREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 147/260 (56%), Gaps = 3/260 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y + G+L  A  +F  + ++  V++TA+I+GY+  G VD A +LFDE+P K++V
Sbjct: 166 TSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVV 225

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNAMIAGYV++   E+ L     M    + PN S++ SVL  C HL SL+LGK +   V
Sbjct: 226 SWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWV 285

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                 K+   +  L+ MY KCG++  A KLF  ++ KDV+ WN MI GY      E+AL
Sbjct: 286 RDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEAL 345

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG---IQYFDSMVNDYGIAAKPDHYTCM 341
            LF+ M  E + P+ +TF+A+L AC   G +DLG     Y D  +   G       +T +
Sbjct: 346 VLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSI 405

Query: 342 VDLLGRAGKLVEAVDLIKKM 361
           + +  + G +  A  + + M
Sbjct: 406 IVMYAKCGCVEVAEQVFRSM 425



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 32/231 (13%)

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N+  WN +I  +         L L   M+  G+ PN+ +  S+   C+   +    KQ+H
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDL-------------------------------E 250
               K  L       T LI MY + G+L                               +
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           DA +LF EI  KDVV+WNAMI+GY Q G+ E+AL  F +M++  + P+  T V++L AC 
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           H   ++LG ++  S V D G          +VD+  + G++  A  L   M
Sbjct: 271 HLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGM 320



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 100/373 (26%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVV-SYNIMLSCILLNSDDVVAAFDFF 62
           K  V+WN+++AG+  Q G+ ++A   F ++ + DV  + + M+S        V++A    
Sbjct: 222 KDVVSWNAMIAGYV-QSGRFEEALACFTRMQEADVSPNQSTMVS--------VLSACGHL 272

Query: 63  QRLPI-KDTASW-------------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           + L + K   SW             N ++  + +   +  AR LF  M +K+ + W+ MI
Sbjct: 273 RSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMI 332

Query: 109 SGYIECGQLDKAVELFKV------------------------------------------ 126
            GY      ++A+ LF+V                                          
Sbjct: 333 GGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKG 392

Query: 127 -APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
              V +V  WT++I  Y K G V++AE++F  M +++L +WNAMI+G   N  AE  L L
Sbjct: 393 TGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGL 452

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              MI  G +P+  +   VL  C+    ++LG +     + S + KD   ++P +  Y  
Sbjct: 453 FEEMINEGFQPDDITFVGVLSACTQAGFVELGHR-----YFSSMNKD-YGISPKLQHY-- 504

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
                                   MI   A+ GK ++A  L   M+   M+PD   + +L
Sbjct: 505 ----------------------GCMIDLLARSGKFDEAKVLMGNME---MEPDGAIWGSL 539

Query: 306 LLACNHAGLVDLG 318
           L AC   G V+ G
Sbjct: 540 LNACRIHGQVEFG 552



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 15/236 (6%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEI 259
           ++L  C  + SL   KQ+H L+ KS L     A + LI  +C      DL  A  LF  I
Sbjct: 30  NLLAKCPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSI 85

Query: 260 --QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
             Q  ++  WN +I  ++       +L LF +M   G+ P+S TF +L  +C  +     
Sbjct: 86  HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
             Q     +    +   P  +T ++ +  + G+L  A  +  K   +     F  L++  
Sbjct: 146 AKQLHAHALK-LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLR-DAVSFTALITGY 203

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
                +D     A  LF+  PA     +  +   Y    ++++       M+E +V
Sbjct: 204 VSEGHVD----DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADV 255


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/639 (38%), Positives = 359/639 (56%), Gaps = 79/639 (12%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-- 66
           +NS+++ +++  G L+DA+++FDK+   D V++N M++  + N  D+   F+ F ++   
Sbjct: 232 FNSLISLYSR-LGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDL-EVFEIFNKMQLA 289

Query: 67  ------------IKDTASWNTMI-----------SGFVQK--------------KNMAKA 89
                       IK  AS   +            SGF                 K M  A
Sbjct: 290 GVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDA 349

Query: 90  RDLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELF------------------------ 124
             LF  M E KN VSW+AMISG ++ G  D+AV LF                        
Sbjct: 350 LSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYP 409

Query: 125 -----------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                      K    +S    TA++  Y+K G    A K+F+ +  K+L+ W+AM+AGY
Sbjct: 410 VFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGY 469

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKD 232
            +    E+  KL   +I  GI+PN  + SSV+  C S  ++ + GKQ H    K  L   
Sbjct: 470 AQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNA 529

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               + L++MY K G+++ A ++F   + +D+V+WN+MISGY+QHG+ +KAL +FD+M+ 
Sbjct: 530 LCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQK 589

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             M  D++TF+ ++ AC HAGLV+ G +YF+SM+ND+ I     HY+CM+DL  RAG L 
Sbjct: 590 RNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLE 649

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           +A+ +I +MPF P   ++ TLL A RVH+ ++L E AA  L +L P ++A  YV L+N+Y
Sbjct: 650 KAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAA-YVLLSNMY 708

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           AA   W +   +R  M +  V K PGYSWIEV    + F +GD  HP    I+ KL EL 
Sbjct: 709 AAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELS 768

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            R+K AGY PD +   H + +E KE +L  HSE+LAIAFGLI  P   PI++ KNLRVCG
Sbjct: 769 IRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCG 828

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH  TK +S +E+R I+VRD+ RFHHFKDG CSCGDYW
Sbjct: 829 DCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 196/417 (47%), Gaps = 72/417 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M  +  V+W S+LAG++   G      ELF ++    V+     +S ++           
Sbjct: 154 MGERNVVSWTSLLAGYS-WNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGI 212

Query: 50  -LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            L    +V    F + +P+     +N++IS + +   +  ARD+F  M  ++ V+W++MI
Sbjct: 213 GLQVHAMVVKHGFEEAIPV-----FNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMI 267

Query: 109 SGYIECGQLDKAVELF---KVAPVKSV--------------------------------- 132
           +GY+  GQ  +  E+F   ++A VK                                   
Sbjct: 268 AGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFT 327

Query: 133 ---VAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRM 188
              +  TA++    K  ++D A  LF  M   KN+V+W AMI+G ++N   +  + L   
Sbjct: 328 TDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQ 387

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G++PN  + S++L     +       ++H  V K+   + ++  T L+  Y K G+
Sbjct: 388 MRREGVKPNHFTYSAILT----VHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGN 443

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
             DA K+F  I+ KD++ W+AM++GYAQ G+ E+A +LF ++  EG+KP+  TF +++ A
Sbjct: 444 TIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINA 503

Query: 309 C-NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC----MVDLLGRAGKLVEAVDLIKK 360
           C +     + G Q+     + Y I  + ++  C    +V +  + G +  A ++ K+
Sbjct: 504 CASPTAAAEQGKQF-----HAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKR 555



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 176/379 (46%), Gaps = 38/379 (10%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D VS    L  + + +++V      F  +  ++  SW ++++G+          +LF  M
Sbjct: 126 DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQM 185

Query: 97  PEK----NSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKV 148
             +    N  + S +I+  +  G +   ++    + K    +++  + ++IS Y + G +
Sbjct: 186 QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGML 245

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A  +FD+M  ++ VTWN+MIAGYV N    +  ++   M   G++P   + +SV+  C
Sbjct: 246 RDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC 305

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTW 267
           + L  L L K +     KS    D   +T L+    KC +++DA  LF L  + K+VV+W
Sbjct: 306 ASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSW 365

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---------------LACNHA 312
            AMISG  Q+G  ++A+ LF +M+ EG+KP+  T+ A+L               +  N+ 
Sbjct: 366 TAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYE 425

Query: 313 GLVDLGIQYFDSM---------VNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKM 361
               +G    D+          V  + I    D   ++ M+    + G+  EA  L  ++
Sbjct: 426 RSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQL 485

Query: 362 ---PFKPQPAIFGTLLSAC 377
                KP    F ++++AC
Sbjct: 486 IKEGIKPNEFTFSSVINAC 504



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 146/272 (53%), Gaps = 12/272 (4%)

Query: 58  AFDFFQRLPIKDTA--SWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMIS 109
           A + F ++P + T     N ++  + + K   +A +LF+++      P+++++S    I 
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 110 GYIECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
                G+L + V  +  K   V  V   T+++  YMK   V+   ++FDEM  +N+V+W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +++AGY  N       +L   M   G+ PN  ++S+V+    +   + +G QVH +V K 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
              +       LIS+Y + G L DA  +F +++ +D VTWN+MI+GY ++G+  +   +F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           +KM+  G+KP  +TF +++ +C  A L +L +
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSC--ASLRELAL 313


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/559 (41%), Positives = 342/559 (61%), Gaps = 10/559 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++++A   F+ +P  +++S+NI+++  + + D + +A   F  +  ++ A+WN M+SG 
Sbjct: 6   GEIQEAIAFFNAMPMRNIMSHNILINGHVQHGD-LDSAIKVFDEMLERNVATWNAMVSGL 64

Query: 81  VQKKNMAKARDLFLAMPE----KNSVSWSAMISGY--IECGQLDKAVELF--KVAPVKSV 132
           +Q +       LF  M E     +  +  +++ G   +      K V  +  K     ++
Sbjct: 65  IQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNL 124

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V  +++   YMK G +   EK+   M  +N+V WN +IAG  +N   E  L L  MM   
Sbjct: 125 VVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMS 184

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+RP+  +L SV+   + L++L  G+Q+H    K+        L+ LISMY KCG LED+
Sbjct: 185 GLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDS 244

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K  L+ +  D V W++MI+ Y  HG+GE+A+ LF++M+ EG+  + +TF++LL AC+H 
Sbjct: 245 MKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHN 304

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GL + G+ +F  MV  YG+  + +HYTC+VDLLGR+G L EA  +I+ MP +    I+ T
Sbjct: 305 GLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKT 364

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSACR+H+  D+A   A  +  LNP ++A  YV L+NI+A+ K+W DV+++R +M++ N
Sbjct: 365 LLSACRIHRNADMATRTAEEILRLNPQDSA-TYVLLSNIHASAKRWKDVSKVRTTMRDRN 423

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K PG SW+EV   V +F  GD+ HP    I   LKEL + MKL GYVPD     H   
Sbjct: 424 VKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTD 483

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            E KE  L+ HSEKLAIAFGL+ +P G+PIRV KNLR+C DCH A K IS I  REIIVR
Sbjct: 484 SEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVR 543

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           DT+RFHHFK G CSCGDYW
Sbjct: 544 DTSRFHHFKHGKCSCGDYW 562



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G++ +A+  F   P++++++   +I+G+++ G +D A K+FDEM  +N+ TWNAM+
Sbjct: 2   YFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMV 61

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           +G ++  + E+GL L R M  LG  P+  +L SVL GC+ L +   GKQVH  V K    
Sbjct: 62  SGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYE 121

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            +    + L  MY K G L +  K+   ++ ++VV WN +I+G AQ+G  E  L L++ M
Sbjct: 122 FNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMM 181

Query: 291 KDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDYGIAA-- 333
           K  G++PD IT V+++ +             HA  +  G    +    S+++ Y      
Sbjct: 182 KMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCL 241

Query: 334 -----------KPDH--YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
                       PD   ++ M+   G  G+  EAV L ++M           F +LL AC
Sbjct: 242 EDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYAC 301



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K G++++A   F  +  +++++ N +I+G+ QHG  + A+++FD+M    ++ +  T
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEM----LERNVAT 56

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           + A++         + G+  F  M   + +   PD +T    L G AG
Sbjct: 57  WNAMVSGLIQFEFNENGLFLFREM---HELGFLPDEFTLGSVLRGCAG 101


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 346/612 (56%), Gaps = 44/612 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  V+WNS++ G       L  A++LFD++P+  VVS+  M++   L    +  A  
Sbjct: 52  MPVKDVVSWNSMIKG-CFDCADLTMARKLFDEMPERSVVSWTTMING-FLQFGKIEVAEG 109

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++P +D A+WN+MI G+     +     LF  MP +N +SW++MI G  + G+ ++A
Sbjct: 110 LFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEA 169

Query: 121 VELFK--------VAPVKSVVAWT---------------------------------AMI 139
           + LF+        V P  S                                      A+I
Sbjct: 170 LGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALI 229

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           + Y    +++ + ++F      N+V W A++ GY  N   ED LK+   M+  G+ PN S
Sbjct: 230 TFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQS 289

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           S +S L  C  L +L  G+++H    K  L  D      LI MY +CG+L D   +F  I
Sbjct: 290 SFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRI 349

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            +K++V+WN++I G AQHG G  AL  F++M    ++PD ITF  LL AC+H+G+   G 
Sbjct: 350 SKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR 409

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
             F     +     K DHY CMVD+LGR+GKL EA +LI+ MP K    ++  LLSAC +
Sbjct: 410 CLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTM 469

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H +L++AE AA  + +L P + +  YV L+N+YA+  +W DV+RIR  MK+  + K PG 
Sbjct: 470 HSKLEVAERAAKCIIDLEP-HCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGR 528

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SWI +    +EF SGDR HP    I++KL+ L  ++K  GYVPD  FALH V +E KE +
Sbjct: 529 SWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVM 588

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L +HSE+LAI FGLI    G+ I V KNLRVCGDCH A K I+ I +R+IIVRD+TRFHH
Sbjct: 589 LSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHH 648

Query: 560 FKDGTCSCGDYW 571
           F DG CSCGDYW
Sbjct: 649 FMDGRCSCGDYW 660



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 196/361 (54%), Gaps = 5/361 (1%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           ++ +A+ +FDK+  PDV  Y +M++    N      A   F  +P+KD  SWN+MI G  
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYR-FDHALQLFYEMPVKDVVSWNSMIKGCF 68

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
              ++  AR LF  MPE++ VSW+ MI+G+++ G+++ A  LF   P + + AW +MI G
Sbjct: 69  DCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYG 128

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNAS 199
           Y   G+V+   +LF EMP +N+++W +MI G  ++  +E+ L L R M+G G  ++P +S
Sbjct: 129 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 188

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +   V+  C++ S+L  G Q+H  VFK     D      LI+ Y  C  +ED+ ++F   
Sbjct: 189 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGK 248

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
              +VV W A+++GY  + K E AL++F +M  EG+ P+  +F + L +C     +D G 
Sbjct: 249 LHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGR 308

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           +   + V   G+         ++ +  R G L + V + K++  K     + +++  C  
Sbjct: 309 EIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQ 366

Query: 380 H 380
           H
Sbjct: 367 H 367


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/621 (40%), Positives = 356/621 (57%), Gaps = 57/621 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSDDV- 55
           M  +  V+WN+++AGF+ Q G  K A EL     D+  +PD    +I L  +L  + DV 
Sbjct: 208 MPERDLVSWNTIIAGFS-QNGFAKKALELVLRMQDEGQRPD----SITLVTVLPAAADVG 262

Query: 56  -----VAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMIS 109
                 +   +  R       + +T ++    K  ++  AR +F  M +K  VSW++M+ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 110 GYIECGQLDKAVELFK------VAPV---------------------------------K 130
           GY++ G+ +KA+ +F+      + P                                   
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGS 382

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            +    ++IS Y K  +VD+A  +F+ +  +  V+WNAMI GY +N    + L     M 
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            LG++P++ ++ SV+   + LS  +  K +H L+ +S L K+    T L+ MY KCG + 
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A KLF  I  + V+TWNAMI GY  HG G  AL LFDKMK   ++P+ IT+++++ AC+
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GLVD G+++F SM  DYG+    DHY  MVDLLGRAG++ EA D I+ MP  P   ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G +L AC++HK +++ E AA  LF LNP +  G +V LANIYA+  KW  VA +R +M++
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNP-DEGGYHVLLANIYASTSKWSKVAEVRKTMEK 681

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K PG S +E+   VH F SG   HP+   I+  L+EL   +K AGYVPD    L  
Sbjct: 682 KGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILD- 740

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V ++V+EQLL  HSEKLAIAFGL+    GT I V KNLRVCGDCH ATKYIS +  REII
Sbjct: 741 VEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREII 800

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD  RFHHFK+G CSCGDYW
Sbjct: 801 VRDMQRFHHFKNGICSCGDYW 821



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 143/265 (53%), Gaps = 14/265 (5%)

Query: 66  PIKDT--ASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQL 117
           PI D   A ++TM+ G+ +  ++  A      M      P   + ++   + G  +   L
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCG--DNADL 163

Query: 118 DKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            +  E    L   +   +V A T +++ Y K  ++D A K+FD MP ++LV+WN +IAG+
Sbjct: 164 KRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF 223

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N +A+  L+L+  M   G RP++ +L +VL   + +  L +GK +H    ++   K  
Sbjct: 224 SQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLV 283

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T L  MY KCG +E A  +F  + +K VV+WN+M+ GY Q+G+ EKA+ +F+KM +E
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 294 GMKPDSITFVALLLACNHAGLVDLG 318
           G+ P  +T +  L AC   G ++ G
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERG 368



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 2/223 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++S + K+G ++ A ++F+ +  K    ++ M+ GY +NS  E  L  L  M    ++
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   + + +L  C   + L+ GK++H  +  +    +  A+T +++MY KC  ++DA K+
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +D+V+WN +I+G++Q+G  +KAL L  +M+DEG +PDSIT V +L A    GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +G       +   G A   +  T + D+  + G  VE   LI
Sbjct: 265 MVGKSIHGYAIR-AGFAKLVNISTALADMYSKCGS-VETARLI 305



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 218 KQVHQ---LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           K++HQ   LV K+ L  +    T L+S++ K G + +A ++F  I  K    ++ M+ GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A++   E AL    +M+ + +KP    F  LL  C     +  G +    ++ +   AA 
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAAN 181

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               T +V++  +  ++ +A  +  +MP
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMP 209


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/559 (42%), Positives = 349/559 (62%), Gaps = 10/559 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+ A  LFD++P+ +++S NIM+    L   ++ +A + F  +P ++ A+WN M++G 
Sbjct: 118 GELQAAVALFDRMPRRNIMSCNIMIKA-YLGMGNLESAKNLFDEMPDRNVATWNAMVTGL 176

Query: 81  VQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSV 132
            + +   +A  LF  M E     +  S  +++ G    G L    ++     K     ++
Sbjct: 177 TKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNL 236

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V   ++   YMK G +   E++ + MP  +LV WN +++G  +  + E  L    MM   
Sbjct: 237 VVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMA 296

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G RP+  +  SV+  CS L+ L  GKQ+H    K+    + + ++ L+SMY +CG L+D+
Sbjct: 297 GFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDS 356

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K FLE + +DVV W++MI+ Y  HG+GE+A++LF++M+ E +  + ITF++LL AC+H 
Sbjct: 357 IKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHC 416

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GL D G+  FD MV  YG+ A+  HYTC+VDLLGR+G L EA  +I+ MP K    I+ T
Sbjct: 417 GLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKT 476

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSAC++HK  ++A   A  +  ++P ++A  YV LANIY++  +W +V+ +R +MK+  
Sbjct: 477 LLSACKIHKNAEIARRVADEVLRIDPQDSAS-YVLLANIYSSANRWQNVSEVRRAMKDKM 535

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K PG SW+EV   VH+F  GD  HP+ V I++ L+EL   +K  GYVPD    LH + 
Sbjct: 536 VKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMD 595

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            E KEQ+L  HSEKLAIAF L+  P G PIRV KNLRVC DCH A KYIS I+K EIIVR
Sbjct: 596 NEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVR 655

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D++RFHHFK+GTCSCGDYW
Sbjct: 656 DSSRFHHFKNGTCSCGDYW 674



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 116/214 (54%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +++ Y + G+L  AV LF   P +++++   MI  Y+  G ++ A+ LFDEMP +N+ TW
Sbjct: 110 LLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATW 169

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NAM+ G  +    E+ L L   M  L   P+  SL SVL GC+HL +L  G+QVH  V K
Sbjct: 170 NAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMK 229

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                +      L  MY K G + D  ++   +    +V WN ++SG AQ G  E  L  
Sbjct: 230 CGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQ 289

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +  MK  G +PD ITFV+++ +C+   ++  G Q
Sbjct: 290 YCMMKMAGFRPDKITFVSVISSCSELAILCQGKQ 323



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 32/193 (16%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--------------- 245
            S++L  C  L S+ LGKQ+H L+F S    D      L+++Y K               
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 246 ------C----------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                 C          G+LE A  LF E+  ++V TWNAM++G  +    E+AL LF +
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M +    PD  +  ++L  C H G +  G Q   + V   G          +  +  +AG
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAG-QQVHAYVMKCGFECNLVVGCSLAHMYMKAG 250

Query: 350 KLVEAVDLIKKMP 362
            + +   +I  MP
Sbjct: 251 SMHDGERVINWMP 263


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 346/612 (56%), Gaps = 44/612 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  V+WNS++ G       L  A++LFD++P+  VVS+  M++   L    +  A  
Sbjct: 68  MPVKDVVSWNSMIKG-CFDCADLTMARKLFDEMPERSVVSWTTMING-FLQFGKIEVAEG 125

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++P +D A+WN+MI G+     +     LF  MP +N +SW++MI G  + G+ ++A
Sbjct: 126 LFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEA 185

Query: 121 VELFK--------VAPVKSVVAWT---------------------------------AMI 139
           + LF+        V P  S                                      A+I
Sbjct: 186 LGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALI 245

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           + Y    +++ + ++F      N+V W A++ GY  N   ED LK+   M+  G+ PN S
Sbjct: 246 TFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQS 305

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           S +S L  C  L +L  G+++H    K  L  D      LI MY +CG+L D   +F  I
Sbjct: 306 SFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRI 365

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            +K++V+WN++I G AQHG G  AL  F++M    ++PD ITF  LL AC+H+G+   G 
Sbjct: 366 SKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGR 425

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
             F     +     K DHY CMVD+LGR+GKL EA +LI+ MP K    ++  LLSAC +
Sbjct: 426 CLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTM 485

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H +L++AE AA  + +L P + +  YV L+N+YA+  +W DV+RIR  MK+  + K PG 
Sbjct: 486 HSKLEVAERAAKCIIDLEP-HCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGR 544

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SWI +    +EF SGDR HP    I++KL+ L  ++K  GYVPD  FALH V +E KE +
Sbjct: 545 SWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVM 604

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L +HSE+LAI FGLI    G+ I V KNLRVCGDCH A K I+ I +R+IIVRD+TRFHH
Sbjct: 605 LSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHH 664

Query: 560 FKDGTCSCGDYW 571
           F DG CSCGDYW
Sbjct: 665 FMDGRCSCGDYW 676



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 204/377 (54%), Gaps = 6/377 (1%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T ++ S++    + + ++ +A+ +FDK+  PDV  Y +M++    N      A   F  +
Sbjct: 11  TFSYQSMITDHLRNQ-RIDEARTVFDKVSFPDVYLYTMMITGYARNYR-FDHALQLFYEM 68

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           P+KD  SWN+MI G     ++  AR LF  MPE++ VSW+ MI+G+++ G+++ A  LF 
Sbjct: 69  PVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFY 128

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
             P + + AW +MI GY   G+V+   +LF EMP +N+++W +MI G  ++  +E+ L L
Sbjct: 129 KMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGL 188

Query: 186 LRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            R M+G G  ++P +S+   V+  C++ S+L  G Q+H  VFK     D      LI+ Y
Sbjct: 189 FRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFY 248

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
             C  +ED+ ++F      +VV W A+++GY  + K E AL++F +M  EG+ P+  +F 
Sbjct: 249 ANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 308

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           + L +C     +D G +   + V   G+         ++ +  R G L + V + K++  
Sbjct: 309 SALNSCCGLEALDWGREIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS- 366

Query: 364 KPQPAIFGTLLSACRVH 380
           K     + +++  C  H
Sbjct: 367 KKNIVSWNSVIVGCAQH 383


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/564 (42%), Positives = 335/564 (59%), Gaps = 13/564 (2%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM 76
           A ++GK   AQ + +     DV   +  L+ + +    V  A + F+ LP +D  +WNTM
Sbjct: 261 ALEKGKQIHAQ-IVESEHHSDV-RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTM 318

Query: 77  ISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS-----GYIECGQLDKAVELFKVA 127
           I G V    + +A  +F  M ++    + V++ A++S     G + CG+   A    K  
Sbjct: 319 IGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHA-RAVKDG 377

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            V  V    A+I+ Y K G +  A ++FD MP +++V+W A++ GY +     +     +
Sbjct: 378 LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFK 437

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+  G+  N  +   VL  CS+  +L+ GK++H  V K+ +  D      L+SMY KCG
Sbjct: 438 KMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCG 497

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +EDA ++   +  +DVVTWN +I G AQ+G+G +AL+ F+ MK E M+P++ TFV ++ 
Sbjct: 498 SVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMS 557

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC    LV+ G + F SM  DYGI     HY CMVD+L RAG L EA D+I  MPFKP  
Sbjct: 558 ACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSA 617

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
           A++G LL+ACR H  +++ E AA     L P N AG YV L+ IYAA   W DVA++R  
Sbjct: 618 AMWGALLAACRAHGNVEIGEQAAEQCLKLEPQN-AGTYVSLSFIYAAAGMWRDVAKLRKL 676

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MKE  V K PG SWIEV   VH F +GD+ HP    I+ +L+ L K++K  GYVPD  F 
Sbjct: 677 MKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFV 736

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           +H + +E KE+ +  HSEKLAIA+GLI  P  TPIRV KNLRVC DCH ATK+IS I  R
Sbjct: 737 MHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGR 796

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EII RD  RFHHFK+G CSCGDYW
Sbjct: 797 EIIARDAHRFHHFKNGECSCGDYW 820



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 169/336 (50%), Gaps = 10/336 (2%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +P+V   N +L  + ++   V  A   F +   K   SWN MISG+  +    +A +LF 
Sbjct: 76  KPNVYIINTLLK-LYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFT 134

Query: 95  AMP----EKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFG 146
            M     E +  ++ +++S       L+      V + +     +     A+IS Y K G
Sbjct: 135 LMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCG 194

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            V  A ++FD M +++ V+W  +   Y E+ +A++ LK    M+  G+RP+  +  +VL 
Sbjct: 195 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLS 254

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C  L++L+ GKQ+H  + +S    D    T L  MY KCG ++DA ++F  +  +DV+ 
Sbjct: 255 ACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIA 314

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WN MI G    G+ E+A  +F +M  E + PD +T++A+L AC   G +  G +     V
Sbjct: 315 WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAV 374

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            D G+ +       ++++  +AG + +A  +  +MP
Sbjct: 375 KD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 409



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 216/474 (45%), Gaps = 92/474 (19%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAF 59
           K+ V+WN +++G+A  RG  ++A  LF  + Q    PD  ++  +LS          AA 
Sbjct: 108 KSVVSWNVMISGYA-HRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSAC-----SSPAAL 161

Query: 60  DFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           ++ + + ++        +    N +IS + +  ++  AR +F AM  ++ VSW+ +   Y
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 112 IECGQLDKAVELFK------VAPVK---------------------------------SV 132
            E G   ++++ +       V P +                                  V
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDV 281

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA+   Y+K G V  A ++F+ +P ++++ WN MI G V++   E+   +   M+  
Sbjct: 282 RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKE 341

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            + P+  +  ++L  C+    L  GK++H    K  L  D      LI+MY K G ++DA
Sbjct: 342 CVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDA 401

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
            ++F  + ++DVV+W A++ GYA  G+  ++   F KM  +G++ + IT++ +L AC+  
Sbjct: 402 RQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNP 461

Query: 311 ---------HAGLVDLGI------------QYF------DSMVNDYGIAAKP-DHYTCMV 342
                    HA +V  GI             YF      D++    G++ +    +  ++
Sbjct: 462 VALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLI 521

Query: 343 DLLGRAGKLVEAV---DLIKKMPFKPQPAIFGTLLSACRVHKRLDLA--EFAAM 391
             L + G+ +EA+   +++K    +P    F  ++SACRV   ++    +FA+M
Sbjct: 522 GGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASM 575



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C     L +GKQVH+ + +  +  +   +  L+ +Y  CG + +A +LF +   K 
Sbjct: 50  LLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKS 109

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WN MISGYA  G G++A  LF  M+ EG++PD  TFV++L AC+    ++ G +   
Sbjct: 110 VVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE-VH 168

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             V + G+A        ++ +  + G + +A  +   M  + +
Sbjct: 169 VRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDE 211


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/639 (39%), Positives = 360/639 (56%), Gaps = 82/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPI 67
           N +L  +AK  G L DA++LFDK+ + DV S+N MLS      N +D+ A FD   ++ +
Sbjct: 62  NRLLHLYAKS-GNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFD---QMSV 117

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS------------------------ 103
            D  S+NT+I+GF      ++A + F+ M E+   S                        
Sbjct: 118 HDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQI 177

Query: 104 ---------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
                          W+A+ + Y +CG LD+A  LF     K+VV+W +MISGY++ G+ 
Sbjct: 178 HGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQP 237

Query: 149 DLAEKLFDEMPTKNL-----------------------------------VTWNAMIAGY 173
           +   KLF EM +  L                                   V W  M+ G 
Sbjct: 238 ETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGC 297

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N   ED L L R M+   +RP+  ++SSV+  C+ L+SL  G+ VH       +  D 
Sbjct: 298 AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDL 357

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+ MY KCG+  DA  +F  +  ++V++WN+MI GYAQ+GK  +AL L+++M  E
Sbjct: 358 LVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHE 417

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            +KPD+ITFV +L AC HAGLV+ G  YF S+   +G+    DHY+CM++LLGRAG + +
Sbjct: 418 NLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDK 477

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           AVDLIK M F+P   I+ TLLS CR++  ++  E AA +LF L+P N AG Y+ L+NIYA
Sbjct: 478 AVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHN-AGPYIMLSNIYA 536

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  +W DVA +R  MK N + K   YSWIE+   VH+F + DR H E   I+E+L  L K
Sbjct: 537 ACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIK 596

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCG 532
           +++ +G+ PD    LH V EE K   + +HSEKLA+AF LIK P G TPIR+ KN+RVCG
Sbjct: 597 KLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCG 656

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K++S I +R II+RD  RFHHF +G CSC D W
Sbjct: 657 DCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 147/300 (49%), Gaps = 9/300 (3%)

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           VQ K +    DL L  P    +  + ++  Y + G L  A +LF     + V +W AM+S
Sbjct: 39  VQAKRLQTHMDLHLYQPTDTFLQ-NRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLS 97

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G V+    +FD+M   + V++N +IAG+  N  +   L+    M   G      +
Sbjct: 98  AYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYT 157

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
             SVL  CS L  ++ GKQ+H  +  + L +       L +MY KCG L+ A  LF  + 
Sbjct: 158 HVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMV 217

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K+VV+WN+MISGY Q+G+ E   +LF +M+  G+ PD +T   +L A    G +D   +
Sbjct: 218 NKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACK 277

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
            F  +     +      +T M+    + GK  +A+ L ++M     +P      +++S+C
Sbjct: 278 TFREIKEKDKVC-----WTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSC 332


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 360/606 (59%), Gaps = 48/606 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC-ILLNSDDVVAAFDFFQRLPIK 68
           NSVL  + K  G  + A+ +F+++P+  V S+N M+S    L   D+  A   F+ +P +
Sbjct: 201 NSVLNMYGKC-GDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDL--ALSLFENMPDR 257

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS------------------ 103
              SWN +I+G+ Q    AKA   F  M       P++ +++                  
Sbjct: 258 TIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQV 317

Query: 104 ---------------WSAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFG 146
                           +A+IS Y + G ++ A  + + A +   +V+++TA++ GY+K G
Sbjct: 318 HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLG 377

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            +  A ++FD M  +++V W AMI GY +N   ++ ++L R+MI  G  PN+ ++++VL 
Sbjct: 378 DMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLS 437

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVV 265
            C+ L+ L+ GKQ+H    +S   + ++    +++MY + G L  A ++F  +  RK+ V
Sbjct: 438 VCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETV 497

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           TW +MI   AQHG GE A+ LF++M   G+KPD ITFV +L AC H G VD G +YF  +
Sbjct: 498 TWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQL 557

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
            + +GI  +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSACRVHK  DL
Sbjct: 558 QDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADL 617

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
           AE AA  L +++P N+ G Y  L+N+Y+A  +W+D A+I    K+ +V K  G+SW  +G
Sbjct: 618 AELAAEKLLSIDPGNS-GAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIG 676

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
             VH F + D +HP+  +++    ++   +K AG+VPDL+  LH V +E+KE++L  HSE
Sbjct: 677 NRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSE 736

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           KLAIAFGL+  P  T +R+ KNLRVC DCH A K+IS +  REII+RD TRFHHFKDG C
Sbjct: 737 KLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFC 796

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 797 SCKDYW 802



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 190/438 (43%), Gaps = 87/438 (19%)

Query: 23  LKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            ++A+ LFD+IP  Q +V ++N +LS +   S  +  A   F  +P +D  SW  M+ G 
Sbjct: 79  FREARRLFDEIPAAQRNVFTWNSLLS-LYAKSGRLADARAVFAEMPERDPVSWTVMVVGL 137

Query: 81  VQKKNMAKARDLFLAM-------------------------------------------- 96
            +     +A  +FL M                                            
Sbjct: 138 NRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCV 197

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
           P  NSV     ++ Y +CG  + A  +F+  P +SV +W AM+S     G++DLA  LF+
Sbjct: 198 PVANSV-----LNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFE 252

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
            MP + +V+WNA+IAGY +N      L    RM+    + P+  +++SVL  C++L  + 
Sbjct: 253 NMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVS 312

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKC----------------------------- 246
           +GKQVH  + +S +         LISMY K                              
Sbjct: 313 IGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEG 372

Query: 247 ----GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
               GD++ A ++F  +  +DVV W AMI GY Q+G  ++A+ LF  M   G +P+S T 
Sbjct: 373 YVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTV 432

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            A+L  C     ++ G Q     +      +     + +V +  R+G L  A  +  ++ 
Sbjct: 433 AAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNS-IVTMYARSGSLPWARRVFDRVH 491

Query: 363 FKPQPAIFGTLLSACRVH 380
           ++ +   + +++ A   H
Sbjct: 492 WRKETVTWTSMIVALAQH 509


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/522 (43%), Positives = 317/522 (60%), Gaps = 9/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A + F+ L  +D  +WNTMI GFV    + +A   F  M E+    +  +++ ++S    
Sbjct: 284 AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACAR 343

Query: 114 CGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G L +  E+   A     V  V    A+I+ Y K G +  A ++FD MP +++V+W  +
Sbjct: 344 PGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTL 403

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           +  Y +     +     + M+  G++ N  +   VL  CS+  +L+ GK++H  V K+ L
Sbjct: 404 LGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGL 463

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D      L+SMY KCG +EDA ++F  +  +DVVTWN +I G  Q+G+G +AL+ ++ 
Sbjct: 464 LADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEV 523

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           MK EGM+P++ TFV +L AC    LV+ G + F  M  DYGI     HY CMVD+L RAG
Sbjct: 524 MKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAG 583

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA D+I  +P KP  A++G LL+ACR+H  +++ E AA +   L P N AG YV L+
Sbjct: 584 HLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQN-AGLYVSLS 642

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
            IYAA   W DVA++R  MKE  V K PG SWIE+   VH F + D+ HP    I+ +L+
Sbjct: 643 AIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELE 702

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
            L+K+MK  GYVPD  F +H + +E KE+ +  HSEKLAIA+GLI  P GTPIR+ KNLR
Sbjct: 703 TLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLR 762

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH ATK+IS I KREII RD  RFHHFK+G CSCGDYW
Sbjct: 763 VCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 162/336 (48%), Gaps = 10/336 (2%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +P+V   N +L  +  +   V  A   F +   K   SWN MISG+  +    +A +LF 
Sbjct: 60  KPNVYITNTLLK-LYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFT 118

Query: 95  AMP----EKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFG 146
            M     E +  ++ +++S       L+      V + +           A+IS Y K G
Sbjct: 119 LMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCG 178

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            V  A ++FD M +++ V+W  +   Y E+ + E+ LK    M+   +RP+  +  +VL 
Sbjct: 179 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLS 238

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C  L++L+ GKQ+H  + +S    D    T L  MY KCG  +DA ++F  +  +DV+ 
Sbjct: 239 ACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIA 298

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WN MI G+   G+ E+A   F +M +EG+ PD  T+  +L AC   G +  G +      
Sbjct: 299 WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAA 358

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            D G+ +       ++++  +AG + +A  +  +MP
Sbjct: 359 KD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 393



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 211/460 (45%), Gaps = 90/460 (19%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAF 59
           K+ V+WN +++G+A  RG  ++A  LF  + Q    PD  ++  +LS          A  
Sbjct: 92  KSVVSWNVMISGYA-HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSAC-----SSPAVL 145

Query: 60  DFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           ++ + + ++        DT   N +IS + +  ++  AR +F AM  ++ VSW+ +   Y
Sbjct: 146 NWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 205

Query: 112 IECGQLDKAVELF------KVAPVK---------------------------------SV 132
            E G  +++++ +      +V P +                                  V
Sbjct: 206 AESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA+   YMK G    A ++F+ +  ++++ WN MI G+V++   E+       M+  
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEE 325

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ P+ ++ ++VL  C+    L  GK++H    K  L  D      LI+MY K G ++DA
Sbjct: 326 GVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDA 385

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
            ++F  + ++DVV+W  ++  YA   +  ++   F +M  +G+K + IT++ +L AC+  
Sbjct: 386 RQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNP 445

Query: 311 ---------HAGLVDLGI------------QYF------DSMVNDYGIAAKP-DHYTCMV 342
                    HA +V  G+             YF      D++    G++ +    +  ++
Sbjct: 446 VALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLI 505

Query: 343 DLLGRAGKLVEAV---DLIKKMPFKPQPAIFGTLLSACRV 379
             LG+ G+ +EA+   +++K    +P  A F  +LSACRV
Sbjct: 506 GGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRV 545



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 1/163 (0%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C     L +GKQVH+ + +  +  +      L+ +Y  CG + +A +LF +   K 
Sbjct: 34  LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKS 93

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WN MISGYA  G  ++A  LF  M+ E ++PD  TFV++L AC+   +++ G +   
Sbjct: 94  VVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE-IH 152

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             V + G+A        ++ +  + G + +A  +   M  + +
Sbjct: 153 VRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDE 195


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/559 (41%), Positives = 325/559 (58%), Gaps = 42/559 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS------------ 101
           D+ +A+  F ++  KD  SWN+MISGFVQ  +  +A  LF  M  +N+            
Sbjct: 181 DLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLS 240

Query: 102 ---------------------------VSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                      +  +AM+  Y++CG L+ A  LF     K +V+
Sbjct: 241 ACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS 300

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGLG 193
           WT MI GY K G  D A ++FD MP +++  WNA+I+ Y +N   ++ L + R + +   
Sbjct: 301 WTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKN 360

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            +PN  +L+S L  C+ L ++ LG  +H  + K  +  +    T LI MY KCG LE A 
Sbjct: 361 TKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKAL 420

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  ++R+DV  W+AMI+G A HG G  A+ LF KM++  +KP+++TF  LL AC+H+G
Sbjct: 421 EVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSG 480

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G  +F+ M   YG+     HY CMVD+LGRAG L EAV+LI+KMP  P  +++G L
Sbjct: 481 LVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGAL 540

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACR++  ++LAE A   L   + +N  G YV L+NIYA   KWD V+R+R  MK + +
Sbjct: 541 LGACRIYGNVELAEMACSRLLETD-SNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGL 599

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG S IEV  ++HEF  GD  HP    I+ KL E+  R+K  GYV D    L  V E
Sbjct: 600 EKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEE 659

Query: 494 E-VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           E +KE  L  HSEKLAIA+GLI++    PIR+ KNLRVCGDCH   K IS +  R+I++R
Sbjct: 660 EYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLR 719

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF  G CSC DYW
Sbjct: 720 DRYRFHHFSGGNCSCMDYW 738



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 162/356 (45%), Gaps = 42/356 (11%)

Query: 43  IMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--- 99
           +  +C L +   +  A   F ++P  +  +WNT+I  F       +   +F+ M  +   
Sbjct: 68  LFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQR 127

Query: 100 --NSVSWSAMISGYIECGQL--DKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             NS ++  +I    E   L   +A+   + K +    +    ++I  Y   G +D A  
Sbjct: 128 FPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYL 187

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F ++  K++V+WN+MI+G+V+    E+ L+L + M     RPN  ++  VL  C+    
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRID 247

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L+ G+     + ++ +  +      ++ MY KCG LEDA +LF +++ KD+V+W  MI G
Sbjct: 248 LEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDG 307

Query: 274 YAQHGKGEKALRLFDKMKDEGM--------------------------------KPDSIT 301
           YA+ G  + A R+FD M  E +                                KP+ +T
Sbjct: 308 YAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVT 367

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
             + L AC   G +DLG  +    +   GI       T ++D+  + G L +A+++
Sbjct: 368 LASTLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEV 422



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 10/222 (4%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLL 206
           +D A K+FD++P  NL TWN +I  +  +     GL +   M+    R PN+ +   V+ 
Sbjct: 80  LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
             + +SSL  G+ +H +V K+    D      LI  Y   GDL+ A  +F +I  KD+V+
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVS 199

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WN+MISG+ Q G  E+AL+LF +MK E  +P+ +T V +L AC  A  +DL    F    
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSAC--AKRIDLE---FGRWA 254

Query: 327 NDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            DY    GI         M+D+  + G L +A  L  KM  K
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK 296



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 34/321 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W +++ G+AK  G    A+ +FD +P+ D+ ++N ++S    N      A  
Sbjct: 293 MEEKDIVSWTTMIDGYAKV-GDYDAARRVFDVMPREDITAWNALISSYQQNGKP-KEALA 350

Query: 61  FFQRLPI-KDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVSW-----SAMISGY 111
            F+ L + K+T      ++  +       A DL        +K  +       +++I  Y
Sbjct: 351 IFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMY 410

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK----VDLAEKLFDEMPTKNLVTWN 167
            +CG L+KA+E+F     + V  W+AMI+G    G     +DL  K+ +     N VT+ 
Sbjct: 411 SKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFT 470

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ--LGK-----QV 220
            ++     +   ++G      M     RP    +  V+ G  H + +   LG+     + 
Sbjct: 471 NLLCACSHSGLVDEGRLFFNQM-----RP----VYGVVPGSKHYACMVDILGRAGCLEEA 521

Query: 221 HQLVFKSPLCKDTT---ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            +L+ K P+    +   AL     +Y      E AC   LE    +   +  + + YA+ 
Sbjct: 522 VELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKA 581

Query: 278 GKGEKALRLFDKMKDEGMKPD 298
           GK +   RL   MK  G++ +
Sbjct: 582 GKWDCVSRLRQHMKVSGLEKE 602


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/624 (41%), Positives = 358/624 (57%), Gaps = 57/624 (9%)

Query: 3   VKTTVNW-----NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCIL------- 49
           +K   +W     N+++  +AK  G L DA  +F+KI QPD+VS+N ++  C+L       
Sbjct: 285 IKLGYDWDPFSANALVDMYAKV-GDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 50  -------------------LNSD--------DVVAAFDF-------FQRLPIKDTASWNT 75
                              + SD        D+ +  D        F  LP KD  +WN 
Sbjct: 344 LELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 403

Query: 76  MISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI--SGYIECGQLDKAVELFKVAP- 128
           +ISG+ Q     +A  LF+ M ++    N  + S ++  +  ++   + + V    V   
Sbjct: 404 IISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSG 463

Query: 129 -VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
               +    ++I  Y K   V+ AE++F+E    +LV++ +MI  Y +    E+ LKL  
Sbjct: 464 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFL 523

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M  + ++P+    SS+L  C++LS+ + GKQ+H  + K     D  A   L++MY KCG
Sbjct: 524 EMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCG 583

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            ++DA + F E+  + +V+W+AMI G AQHG G +AL+LF++M  EG+ P+ IT V++L 
Sbjct: 584 SIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLG 643

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           ACNHAGLV     YF+SM   +G     +HY CM+DLLGRAGK+ EAV+L+ KMPF+   
Sbjct: 644 ACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANA 703

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
           +++G LL A R+HK ++L   AA  LF L P   +G +V LANIYA+  KW++VA +R  
Sbjct: 704 SVWGALLGAARIHKDVELGRRAAEMLFILEP-EKSGTHVLLANIYASAGKWENVAEVRRL 762

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M+++ V K PG SWIEV   V+ F  GDR H     I+ KL EL   M  AGYVP +E  
Sbjct: 763 MRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEID 822

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH V +  KE LL  HSEKLA+AFGLI  P G PIRV KNLRVC DCH A KYI  I  R
Sbjct: 823 LHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSR 882

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 883 EIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 54/396 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK   +  D++ LFD+IP+ +VVS+N + SC  +  D    A   F  + +  
Sbjct: 196 NTLVVMYAKC-DEFLDSKRLFDEIPERNVVSWNALFSC-YVQXDFCGEAVGLFYEMVLSG 253

Query: 69  --------------------------------------DTASWNTMISGFVQKKNMAKAR 90
                                                 D  S N ++  + +  ++A A 
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------------KVAPVKSVVAWTAM 138
            +F  + + + VSW+A+I+G +     ++A+EL             K+     +     +
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGL 373

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y K   ++ A   F+ +P K+L+ WNA+I+GY +     + L L   M   GI  N 
Sbjct: 374 VDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQ 433

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           ++LS++L   + L  + + +QVH L  KS    D   +  LI  Y KC  +EDA ++F E
Sbjct: 434 TTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 493

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
               D+V++ +MI+ YAQ+G+GE+AL+LF +M+D  +KPD     +LL AC +    + G
Sbjct: 494 CTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQG 553

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            Q    ++  YG          +V++  + G + +A
Sbjct: 554 KQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDA 588



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y K      A KL DE    +LV+W+A+I+GY +N      L     M  LG++ N
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + SSVL  CS +  L++GKQVH +V  S    D      L+ MY KC +  D+ +LF 
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFD 216

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           EI  ++VV+WNA+ S Y Q     +A+ LF +M   G+KP+  +  +++ AC   GL D 
Sbjct: 217 EIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRD- 273

Query: 318 GIQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
                  +++ Y    G    P     +VD+  + G L +A+ + +K+  +P    +  +
Sbjct: 274 --SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAV 330

Query: 374 LSACRVHKRLDLA 386
           ++ C +H+  + A
Sbjct: 331 IAGCVLHEHHEQA 343



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 52/294 (17%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY----------------- 111
           D +  N +I+ + + +    AR L     E + VSWSA+ISGY                 
Sbjct: 90  DPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 112 ---IECGQLD-----KAVELFKVAPVKSVVAWTAMISGY-----------MKFGKVDL-- 150
              ++C +       KA  + K   +   V    ++SG+           + + K D   
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 151 -AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            +++LFDE+P +N+V+WNA+ + YV+  +  + + L   M+  GI+PN  SLSS++  C+
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L     GK +H  + K     D  +   L+ MY K GDL DA  +F +I++ D+V+WNA
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 270 MISGYAQHGKGEKALRLFDKMKDE------GMKPDSITFVALLLACNHAGLVDL 317
           +I+G   H   E+AL L  +MK +       M  +S  FV++       GLVD+
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSV-------GLVDM 376



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (56%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P + S S +L  C    SL+ G Q+H  + KS L  D +    LI++Y KC     A KL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
             E    D+V+W+A+ISGYAQ+G G  AL  F +M   G+K +  TF ++L AC+
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 351/627 (55%), Gaps = 80/627 (12%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLS----------------------CILLNSD---DVV 56
           +++DA+++FD++P+ D + +N M+S                      C  L++    D++
Sbjct: 169 RVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDIL 228

Query: 57  AAFDFFQRLPI----------KDTASWNTMISGFVQ------KKNMAKARDLFLAMPEKN 100
            A    Q L +              S + +++GF+       K  M  A  LF    + +
Sbjct: 229 PAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA--LFREFRKPD 286

Query: 101 SVSWSAMISGYIECGQLDKAVELFK----------------VAPVKS------------- 131
            V+++AMI GY   G+ + ++ LFK                + PV               
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL 346

Query: 132 -------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                      TA+ + Y K  +++ A KLFDE P K+L +WNAMI+GY +N   ED + 
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L R M      PN  +++ +L  C+ L +L LGK VH LV  +         T LI MY 
Sbjct: 407 LFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG + +A +LF  + +K+ VTWN MISGY  HG+G++AL +F +M + G+ P  +TF+ 
Sbjct: 467 KCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+HAGLV  G + F+SM++ YG      HY CMVD+LGRAG L  A+  I+ M  +
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE 586

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P  +++ TLL ACR+HK  +LA   +  LF L+P N  G +V L+NI++A + +   A +
Sbjct: 587 PGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDN-VGYHVLLSNIHSADRNYPQAATV 645

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R + K+  + K PGY+ IE+G   H F SGD+ HP++  I+EKL++LE +M+ AGY P+ 
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPET 705

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
           E ALH V EE +E ++  HSE+LAIAFGLI    GT IR+ KNLRVC DCH  TK IS I
Sbjct: 706 ELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKI 765

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +R I+VRD  RFHHFKDG CSCGDYW
Sbjct: 766 TERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 170/367 (46%), Gaps = 27/367 (7%)

Query: 46  SCILLNSDDVVAAFDF---------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           S +LL S+ V   F F         F R+P KDT  WNTMISG+ + +   ++  +F  +
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 97  PEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGK 147
             +     ++ +   ++    E  +L   +++  +A      +     T  IS Y K GK
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           + +   LF E    ++V +NAMI GY  N   E  L L + ++  G R  +S+L S++  
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
             HL    L   +H    KS      +  T L ++Y K  ++E A KLF E   K + +W
Sbjct: 332 SGHL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSW 388

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NAMISGY Q+G  E A+ LF +M+     P+ +T   +L AC   G + LG ++   +V 
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVR 447

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
                +     T ++ +  + G + EA  L   M  K     + T++S   +H +     
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQ--- 503

Query: 388 FAAMNLF 394
             A+N+F
Sbjct: 504 -EALNIF 509



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 147/376 (39%), Gaps = 85/376 (22%)

Query: 12  VLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
           VL GF     + GK+K    LF +  +PD+V+YN M+     N +  + +   F+ L   
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETEL-SLSLFKELMLS 316

Query: 66  -------------PIKDTASWNTMISGFVQKKN--------------------MAKARDL 92
                        P+         I G+  K N                    +  AR L
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA--------PV--------------- 129
           F   PEK+  SW+AMISGY + G  + A+ LF+          PV               
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGAL 436

Query: 130 ----------------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                            S+   TA+I  Y K G +  A +LFD M  KN VTWN MI+GY
Sbjct: 437 SLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGY 496

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKD 232
             +   ++ L +   M+  GI P   +   VL  CSH   ++ G ++ + ++ +      
Sbjct: 497 GLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPS 556

Query: 233 TTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                 ++ +  + G L+ A +    + I+    V W  ++     H     A  + +K+
Sbjct: 557 VKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV-WETLLGACRIHKDTNLARTVSEKL 615

Query: 291 KDEGMKPDSITFVALL 306
            +  + PD++ +  LL
Sbjct: 616 FE--LDPDNVGYHVLL 629



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q H  +       D + LT L       G +  A  +FL +QR DV  +N ++ G++ + 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 279 KGEKALRLFDKM-KDEGMKPDSITF 302
               +L +F  + K   +KP+S T+
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTY 122


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/612 (39%), Positives = 359/612 (58%), Gaps = 50/612 (8%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFDFF 62
           + WN+++ G A + G  ++A E+++++ +    P+ ++Y I+L+   +NS  +    +  
Sbjct: 294 IAWNTMIGGLA-EGGYWEEASEVYNQMQREGVMPNKITYVILLNA-CVNSAALHWGKEIH 351

Query: 63  QRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            R+       D    N +IS + +  ++  AR +F  M  K+ +SW+AMI G  + G   
Sbjct: 352 SRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGA 411

Query: 119 KAVELFK------VAPVK-------------SVVAW--------------------TAMI 139
           +A+ +++      V P +             + + W                      ++
Sbjct: 412 EALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLV 471

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           + Y   G V  A ++FD M  +++V +NAMI GY  ++  ++ LKL   +   G++P+  
Sbjct: 472 NMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 531

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +  ++L  C++  SL+  +++H LV K     DT+    L+S Y KCG   DA  +F ++
Sbjct: 532 TYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM 591

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            +++V++WNA+I G AQHG+G+ AL+LF++MK EG+KPD +TFV+LL AC+HAGL++ G 
Sbjct: 592 TKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGR 651

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           +YF SM  D+ I    +HY CMVDLLGRAG+L EA  LIK MPF+    I+G LL ACR+
Sbjct: 652 RYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRI 711

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H  + +AE AA +   L+  NA   YV L+++YAA   WD  A++R  M++  V K PG 
Sbjct: 712 HGNVPVAERAAESSLKLDLDNAV-VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGR 770

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SWI+VG  +H F + DR HP+   I+ +L  L   MK+ GYVPD    +H V E  KE  
Sbjct: 771 SWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENA 830

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           +  HSE+LAIA+GLI  P GT I +FKNLRVC DCH ATK+IS I  REII RD  RFHH
Sbjct: 831 VCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHH 890

Query: 560 FKDGTCSCGDYW 571
           FKDG CSCGDYW
Sbjct: 891 FKDGVCSCGDYW 902



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 211/447 (47%), Gaps = 53/447 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M  K+ V+W   + G+A   G+ + A E+F K+ Q  VV   I    +L           
Sbjct: 187 MEKKSVVSWTITIGGYADC-GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKW 245

Query: 50  --------LN----SDDVVAAF---------------DFFQRLPIKDTASWNTMISGFVQ 82
                   LN    SD  V                    F++L  +D  +WNTMI G  +
Sbjct: 246 GKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVA 134
                +A +++  M  +    N +++  +++  +    L    E+     K      +  
Sbjct: 306 GGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+IS Y + G +  A  +FD+M  K++++W AMI G  ++ +  + L + + M   G+
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV 425

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  + +S+L  CS  ++L+ G+++HQ V ++ L  D      L++MY  CG ++DA +
Sbjct: 426 EPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQ 485

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  + ++D+V +NAMI GYA H  G++AL+LFD++++EG+KPD +T++ +L AC ++G 
Sbjct: 486 VFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 545

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFG 371
           ++   +   ++V   G  +       +V    + G   +A  + +KM  +      AI G
Sbjct: 546 LEWARE-IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIG 604

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNP 398
                 R    L L  F  M +  + P
Sbjct: 605 GSAQHGRGQDALQL--FERMKMEGVKP 629



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 192/404 (47%), Gaps = 48/404 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA------ 57
           +T  +WN+++ G+  Q G ++ A +L  ++ Q  +      +   L +     A      
Sbjct: 89  RTVHSWNAMVVGYI-QYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGRE 147

Query: 58  -AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
             F   Q   + D    N +++ + +  ++ +AR++F  M +K+ VSW+  I GY +CG+
Sbjct: 148 IHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGR 207

Query: 117 LDKAVELFKVAPVKSVV-------------------AW--------------------TA 137
            + A E+F+    + VV                    W                    TA
Sbjct: 208 SETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTA 267

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K G      ++F+++  ++L+ WN MI G  E  + E+  ++   M   G+ PN
Sbjct: 268 LVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPN 327

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   +L  C + ++L  GK++H  V K+    D      LISMY +CG ++DA  +F 
Sbjct: 328 KITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFD 387

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++ RKDV++W AMI G A+ G G +AL ++ +M+  G++P+ +T+ ++L AC+    ++ 
Sbjct: 388 KMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEW 447

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G +    +V + G+A        +V++    G + +A  +  +M
Sbjct: 448 GRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 158/318 (49%), Gaps = 35/318 (11%)

Query: 49  LLNSDDVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----S 103
           ++  D  V    + Q+   + +++ +  M+   ++ K++   R +   + +  +V    +
Sbjct: 1   MIEKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYT 60

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
            +A+I+ YI+CG +++A +++K                YM+                + +
Sbjct: 61  VNALINMYIQCGSIEEARQVWKKLS-------------YME----------------RTV 91

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
            +WNAM+ GY++  + E  LKLLR M   G+ P+ +++ S L  C    +L+ G+++H  
Sbjct: 92  HSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQ 151

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
             ++ L  D      +++MY KCG +E+A ++F ++++K VV+W   I GYA  G+ E A
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETA 211

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
             +F KM+ EG+ P+ IT++++L A +    +  G      ++N  G  +     T +V 
Sbjct: 212 FEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNA-GHESDTAVGTALVK 270

Query: 344 LLGRAGKLVEAVDLIKKM 361
           +  + G   +   + +K+
Sbjct: 271 MYAKCGSYKDCRQVFEKL 288



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 8/194 (4%)

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           +E   A D ++ L+     G + N+S    +L  C  +  L  G+QVHQ + +     D 
Sbjct: 2   IEKDGAVDVVQYLQQQ---GAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQ 58

Query: 234 TALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
             +  LI+MY +CG +E+A +++  L    + V +WNAM+ GY Q+G  EKAL+L  +M+
Sbjct: 59  YTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQ 118

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             G+ PD  T ++ L +C   G ++ G + +F +M    G+        C++++  + G 
Sbjct: 119 QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGS 176

Query: 351 LVEAVDLIKKMPFK 364
           + EA ++  KM  K
Sbjct: 177 IEEAREVFDKMEKK 190


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/586 (39%), Positives = 335/586 (57%), Gaps = 45/586 (7%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+++ D++P  D +++  M+    +   DV AA   F+ +  K    WN MISG+VQ  
Sbjct: 219 DARKVLDEMPDKDDLTWTTMV-VGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSG 277

Query: 85  NMAKARDLFLAM-------------------------------------------PEKNS 101
             A A +LF  M                                           PE   
Sbjct: 278 MCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAAL 337

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
              +A+++ Y + G++  A  +F    +K VV+W  ++SGY+  G +D A ++F  MP K
Sbjct: 338 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK 397

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N ++W  M++GYV    +ED LKL   M    ++P   + +  +  C  L +L+ G+Q+H
Sbjct: 398 NDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLH 457

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             + +       +A   L++MY KCG + DA  +FL +   D V+WNAMIS   QHG G 
Sbjct: 458 AHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGR 517

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +AL LFD+M  EG+ PD I+F+ +L ACNHAGLVD G  YF+SM  D+GI+   DHY  +
Sbjct: 518 EALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARL 577

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           +DLLGR+G++ EA DLIK MPF+P P+I+  +LS CR +  ++   +AA  LF + P + 
Sbjct: 578 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH- 636

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 461
            G Y+ L+N Y+A  +W D AR+R  M++  V K PG SWIEVG+ +H F  GD  HPE 
Sbjct: 637 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 696

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             +++ L+ +  RM+  GYVPD +F LH +    KE +L  HSEKLA+ FGL+K+P G  
Sbjct: 697 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 756

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           + V KNLR+CGDCH A  ++S    REI+VRD  RFHHFKDG CSC
Sbjct: 757 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 192/440 (43%), Gaps = 83/440 (18%)

Query: 21  GKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWN 74
           G+L+DA   FD +P  + D V +N M+S     S    A   F   L       D  S+ 
Sbjct: 106 GRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFT 165

Query: 75  TMISGFVQKKNMAKAR--DLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKV-- 126
            +IS   Q  N+A      L  ++ +  + +     +A+I+ Y++C   + + +  KV  
Sbjct: 166 ALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLD 225

Query: 127 -APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
             P K  + WT M+ GY++ G V+ A  +F+E+  K  V WNAMI+GYV++    D  +L
Sbjct: 226 EMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFEL 285

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTAL---TPLIS 241
            R M+   +  +  + +SVL  C++      GK VH Q++   P      AL     L++
Sbjct: 286 FRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVT 345

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNA-------------------------------M 270
           +Y K G +  A ++F  +  KDVV+WN                                M
Sbjct: 346 LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 405

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGI 319
           +SGY   G  E AL+LF++M+ E +KP   T+   + AC            HA LV  G 
Sbjct: 406 VSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGF 465

Query: 320 QYFDS-------------MVNDYGIA--AKPD----HYTCMVDLLGRAGKLVEAVDLIKK 360
           +  +S              VND  +     P+     +  M+  LG+ G   EA++L  +
Sbjct: 466 EASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQ 525

Query: 361 M---PFKPQPAIFGTLLSAC 377
           M      P    F T+L+AC
Sbjct: 526 MVAEGIDPDRISFLTILTAC 545



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 145/319 (45%), Gaps = 31/319 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           MN+K  V+WN++L+G+    G L  A E+F  +P  + +S+ +M+S  +    S+D   A
Sbjct: 363 MNLKDVVSWNTILSGYIDS-GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED---A 418

Query: 59  FDFFQRLPIKDTASWNTMISGFV----QKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
              F ++  +D    +   +G +    +   +   R L   +     E ++ + +A+++ 
Sbjct: 419 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTM 478

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTW 166
           Y +CG ++ A  +F V P    V+W AMIS   + G    A +LFD+M  + +    +++
Sbjct: 479 YAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISF 538

Query: 167 NAMIAGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQL 223
             ++         ++G      M    GI P     + +  LLG     S ++G +   L
Sbjct: 539 LTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLG----RSGRIG-EARDL 593

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLE----DACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +   P     +    ++S     GD+E     A +LF  I + D  T+  + + Y+  G+
Sbjct: 594 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD-GTYILLSNTYSAAGR 652

Query: 280 GEKALRLFDKMKDEGMKPD 298
              A R+   M+D G+K +
Sbjct: 653 WVDAARVRKLMRDRGVKKE 671


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/633 (40%), Positives = 347/633 (54%), Gaps = 82/633 (12%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF--------------DF 61
           F   RG   DA+++FD +P PD V +N +L+   L+  + + AF                
Sbjct: 169 FTLSRGN--DARKVFDAVPSPDTVLWNTLLAG--LSGSEALEAFVRMAGAGSVRPDSTTL 224

Query: 62  FQRLPIKDTASWNTM-----------------------ISGFVQKKNMAKARDLFLAMPE 98
              LP     +  TM                       IS + +  +M  AR LF  M  
Sbjct: 225 ASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEG 284

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFK----------------VAPVKSVVAW------- 135
            + V+++A+ISGY   G +  +VELFK                + PV S           
Sbjct: 285 PDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCL 344

Query: 136 ----------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                           TA+ + Y +F  +D A + FD MP K + +WNAMI+GY +N   
Sbjct: 345 HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLT 404

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E  + L + M  L +RPN  ++SS L  C+ L +L LGK VH+++    L  +   +T L
Sbjct: 405 EMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTAL 464

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I MY KCG + +A  +F  +  K+VV+WN MISGY  HG+G +AL+L+  M D  + P S
Sbjct: 465 IDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTS 524

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            TF+++L AC+H GLV  G   F SM +DYGI    +H TCMVDLLGRAG+L EA +LI 
Sbjct: 525 STFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELIS 584

Query: 360 KMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           + P     P I+G LL AC VHK  DLA+ A+  LF L P N  G YV L+N+Y + K++
Sbjct: 585 EFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPEN-TGYYVLLSNLYTSKKQY 643

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            + A +R   K   +VK PG + IE+G   H F +GDR HP+  +I+  L++L  +M  A
Sbjct: 644 SEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEA 703

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GY PD E AL+ V EE KE ++  HSEKLAIAFGL+    GT IR+ KNLRVC DCH AT
Sbjct: 704 GYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNAT 763

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K IS + +R I+VRD +RFHHF+DG CSCGDYW
Sbjct: 764 KIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 133/275 (48%), Gaps = 36/275 (13%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +A+   Y    + + A K+FD +P+ + V WN ++AG    S +E     +RM     +R
Sbjct: 162 SALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL---SGSEALEAFVRMAGAGSVR 218

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++++L+SVL   + +++  +G+ VH    K  L +    +T LIS+Y KCGD+E A  L
Sbjct: 219 PDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHL 278

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL---------- 305
           F  ++  D+VT+NA+ISGY+ +G    ++ LF ++   G++P S T VAL          
Sbjct: 279 FDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHE 338

Query: 306 -LLACNHAGLVDLGI---------------QYFDSMVNDYGIAAKP----DHYTCMVDLL 345
            L  C HA +V  G+               ++ D         A P    + +  M+   
Sbjct: 339 PLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGY 398

Query: 346 GRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
            + G    AV L ++M     +P P    + LSAC
Sbjct: 399 AQNGLTEMAVALFQQMQALNVRPNPLTISSALSAC 433



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 16/136 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDD 54
           M  KT  +WN++++G+A Q G  + A  LF ++      P P  +S + + +C  L +  
Sbjct: 383 MPEKTMESWNAMISGYA-QNGLTEMAVALFQQMQALNVRPNPLTIS-SALSACAQLGA-- 438

Query: 55  VVAAFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            ++   +  ++   +    N      +I  +V+  ++A+AR +F +M  KN VSW+ MIS
Sbjct: 439 -LSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMIS 497

Query: 110 GYIECGQLDKAVELFK 125
           GY   GQ  +A++L+K
Sbjct: 498 GYGLHGQGAEALKLYK 513



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           + +H L   S    D    + L  +Y       DA K+F  +   D V WN +++G +  
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS-- 200

Query: 278 GKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
             G +AL  F +M   G ++PDS T  ++L A        +G +   +     G+A    
Sbjct: 201 --GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEH 257

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             T ++ L  + G +  A  L  +M   P    +  L+S   ++
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRME-GPDLVTYNALISGYSIN 300


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/535 (43%), Positives = 324/535 (60%), Gaps = 9/535 (1%)

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF---LAMPEK-N 100
           L+C+     ++  A   F ++   D  S+N MISG+        +  LF   L   EK N
Sbjct: 248 LACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVN 307

Query: 101 SVSWSAMISGYIECGQL--DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
           S S   +I  +   G L   + +  F  K   V +    TA+ + Y +  +++ A  LFD
Sbjct: 308 SSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFD 367

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
           E   K+L +WNAMI+GY +N   E  + L + M    +RPN  +++S+L  C+ L +L L
Sbjct: 368 ESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSL 427

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK VH L+ +     +    T LI MY KCG + +A +LF  +  K+ VTWNAMISGY  
Sbjct: 428 GKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGL 487

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG G +AL LF++M    + P  +TF+++L AC+HAGLV  G + F SMV+D+G    P+
Sbjct: 488 HGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPE 547

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY CMVDLLGRAG L +A+D I+KMP +P P ++G LL AC +HK  +LA  A+  LF L
Sbjct: 548 HYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFEL 607

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
           +P N  G YV L+NIY+A + + + A +R  +K   + K PG + IEV   +H F SGD+
Sbjct: 608 DPQN-VGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQ 666

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
            HP+  +I+  L++L  +M+ AG+  +   ALH V EE KE ++  HSEKLAIAFGLI  
Sbjct: 667 SHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITS 726

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             GT IR+ KNLRVC DCH ATK+IS I +R I+VRD  RFHHFKDG CSCGDYW
Sbjct: 727 EPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 175/349 (50%), Gaps = 14/349 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           V AA   F  +  +DT  WNTM+SG V+     +A  +F  M +     +S + +A++ G
Sbjct: 157 VAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPG 216

Query: 111 YIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             E   L   + +     KV         T +   Y K G+++ A  LF ++   +LV++
Sbjct: 217 VAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSY 276

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NAMI+GY  N+  E  ++L + ++  G + N+SS+  ++        L L + +H    K
Sbjct: 277 NAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTK 336

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S +  +++  T L ++Y +  ++E A  LF E   K + +WNAMISGYAQ+G  EKA+ L
Sbjct: 337 SGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISL 396

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+   ++P+ +T  ++L AC   G + LG ++   ++N     +     T ++D+  
Sbjct: 397 FQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNIFVSTALIDMYA 455

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           + G + EA  L   MP K     +  ++S   +H         A+NLFN
Sbjct: 456 KCGSITEAQRLFSMMPEK-NAVTWNAMISGYGLHGY----GHEALNLFN 499



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 28/285 (9%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           +  A  LF  IP PD+  YN+++    LN                      N+  S    
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLN----------------------NSPSSAVSL 95

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-VVAWTAMISG 141
             ++ K+  L     E ++ +++ +ISG    G          VA   S +   +A+++ 
Sbjct: 96  YTHLRKSTPL-----EPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVAC 150

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y KF +V  A K+FD M  ++ V WN M++G V+NS  ++ + +   M+  GI  +++++
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           ++VL G + L  L LG  +  L  K         +T L  +Y KCG++E A  LF +I +
Sbjct: 211 AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQ 270

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            D+V++NAMISGY  + + E ++RLF ++   G K +S + V L+
Sbjct: 271 PDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 161/388 (41%), Gaps = 97/388 (25%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           LA    + G+++ A+ LF +I QPD+VSYN M+S    N++   +   F + L   +  +
Sbjct: 248 LACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVN 307

Query: 73  WNTM------------------ISGFVQK--------------------KNMAKARDLFL 94
            +++                  I GF  K                      +  AR LF 
Sbjct: 308 SSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFD 367

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----VKSVVA---------- 134
              EK+  SW+AMISGY + G  +KA+ LF+      V P    V S+++          
Sbjct: 368 ESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSL 427

Query: 135 --W-----------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
             W                 TA+I  Y K G +  A++LF  MP KN VTWNAMI+GY  
Sbjct: 428 GKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGL 487

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-----VHQLVFKSPLC 230
           + +  + L L   M+   + P   +  SVL  CSH   ++ G +     VH   F+ PL 
Sbjct: 488 HGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFE-PLP 546

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV-----TWNAMISGYAQHGKGEKALR 285
           +    +  L+    + G+L+ A    L+  RK  V      W A++     H     A  
Sbjct: 547 EHYACMVDLLG---RAGNLDKA----LDFIRKMPVEPGPPVWGALLGACMIHKDANLARL 599

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAG 313
             DK+ +  + P ++ +  LL     AG
Sbjct: 600 ASDKLFE--LDPQNVGYYVLLSNIYSAG 625



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 18/169 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDDVVA 57
           K+  +WN++++G+A Q G  + A  LF ++      P P  V+ +I+ +C  L +  +  
Sbjct: 372 KSLASWNAMISGYA-QNGLTEKAISLFQEMQKCEVRPNPVTVT-SILSACAQLGALSLGK 429

Query: 58  -AFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              D   R   +     +T +I  + +  ++ +A+ LF  MPEKN+V+W+AMISGY   G
Sbjct: 430 WVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHG 489

Query: 116 QLDKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
              +A+ LF      +V+P    V + +++      G V   +++F  M
Sbjct: 490 YGHEALNLFNEMLHSRVSPTG--VTFLSVLYACSHAGLVREGDEIFRSM 536


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/638 (38%), Positives = 361/638 (56%), Gaps = 90/638 (14%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD----FFQRLPIKDTASW 73
            Q G +   ++ FD++P  D+VS+N +++  + N D     FD    FF+ + ++     
Sbjct: 6   SQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRD-----FDRCWLFFRGMLLQGINPG 60

Query: 74  NTMISGFVQKKNMAK---------------------------------------ARDLFL 94
              IS F+     A+                                       A  +FL
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVK------------------ 130
            M  ++ V+WSAM++ Y   G   +A+ LF+      VAP K                  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 131 ---------------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                           VV  TA+++ Y K G+++ A + F ++  KN+V W+A+ A Y  
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL--VFKSPLCKDT 233
           N    D +++L  M   G+ PN+++  SVL  C+ +++L+ G+++H+   V    L  D 
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDV 300

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
             LT L++MY KCG+L  A  +F +I   D+V WN++I+  AQHG+ EKAL LF++M+ E
Sbjct: 301 YVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLE 360

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++P  ITF ++L AC+HAG++D G ++F S + D+GI  + +H+ CMVDLLGRAG +V+
Sbjct: 361 GLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVD 420

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           + DL+  MPF+P P  +   L ACR ++ +D A +AA NLF L+P   A  YV L+N+YA
Sbjct: 421 SEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAP-YVLLSNMYA 479

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
              +W DVAR+R +M+    VK  G SWIEV   VHEF SGD  HP +  IH +L+ L K
Sbjct: 480 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 539

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
            MK AGYVPD E  LH V +EVKE ++ +HSEKLA+AF L+  P G+PIRV KNLRVC D
Sbjct: 540 LMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCND 599

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A+K+IS +  REI+VRD  RFH F++G CSCGDYW
Sbjct: 600 CHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           M+S Y + G +    K FDEMP  ++V+WNA+IA Y+ N   +      R M+  GI P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              +S  L  C+    + +G+ +   +  + + +++   T L+SMY K G   DA  +FL
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +DVV W+AM++ YA++G   +AL LF +M  +G+ P+ +T V+ L AC   G +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G       V   GI +     T +V+L G+ G++  AV+   ++
Sbjct: 181 G-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI 223


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/584 (40%), Positives = 357/584 (61%), Gaps = 17/584 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V++  +WN +++ +  Q G+++ A  +F+ + +  +VS+N +++    N  D +A   
Sbjct: 408 MQVRSVSSWNVMVSLYTHQ-GRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMA-LK 465

Query: 61  FFQRLPIK-----DTASWNTMISGFVQKKNMAKARD-----LFLAMPEKNSVSWSAMISG 110
           FF R+        D  +  +++S     + +   +      L   MP  + +  +A+IS 
Sbjct: 466 FFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQI-MNALIST 524

Query: 111 YIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           Y + G ++ A  +   A V   +V+++TA++ GY+K G    A ++FD M  ++++ W A
Sbjct: 525 YAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTA 584

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI GY +N   ++ ++L R MI +G  PN+ +L++VL  C+ L+ L  GKQ+H    +S 
Sbjct: 585 MIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSL 644

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLF 287
             +  +    +I++Y + G +  A ++F +I  RK+ +TW +MI   AQHG GE+A+ LF
Sbjct: 645 QEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLF 704

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           ++M   G+KPD IT+V +L AC HAG VD G +Y++ M N++GI  +  HY CMVDL  R
Sbjct: 705 EEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHAR 764

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AG L EA + I++MP  P   ++G+LL+ACRV K  DLAE AA  L +++P N+ G Y  
Sbjct: 765 AGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNS-GAYSA 823

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           LAN+Y+A  +W+D ARI    K+  V K  G+SW  V   VH F + D +HP+  SI+ K
Sbjct: 824 LANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRK 883

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
             E+ + +K AG+VPDL   LH V +E+KE+LL  HSEKLAIAFGLI  P  T +R+ KN
Sbjct: 884 AAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKN 943

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVC DCH A K+IS    REIIVRD TRFHHF+DG CSC DYW
Sbjct: 944 LRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 175/365 (47%), Gaps = 56/365 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----------- 52
           +    WNS+L+ +AK  G+L DA  +F ++P  D VS+ IM+  + LN            
Sbjct: 279 RNAFTWNSLLSLYAKS-GRLPDAHVVFAEMPDRDAVSWTIMI--VGLNRSGRFWDAVKTF 335

Query: 53  -DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA--MPEKNSVSWSAMIS 109
            D V   F   Q       +S   M +  V +K       L L+  +P  NSV +     
Sbjct: 336 LDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYM---- 391

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            Y +CG  + A  +F+   V+SV +W  M+S Y   G+++LA  +F+ M  +++V+WN +
Sbjct: 392 -YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTI 450

Query: 170 IAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           IAGY +N      LK   RM+    + P+A +++SVL  C++L  L++GKQ+H  + ++ 
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 229 LCKDTTALTPLISMYCKCGDLEDACK---------------------------------L 255
           +   +  +  LIS Y K G +E A +                                 +
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREI 570

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DV+ W AMI GY Q+G+ ++A+ LF  M   G +P+S T  A+L AC     +
Sbjct: 571 FDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYL 630

Query: 316 DLGIQ 320
           D G Q
Sbjct: 631 DYGKQ 635



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 26/305 (8%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           ++   W +++S Y K G++  A  +F EMP ++ V+W  MI G   +    D +K    M
Sbjct: 279 RNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM 338

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  G  P+  +L++VL  C+ + +  +G++VH  V K  L         ++ MY KCGD 
Sbjct: 339 VSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E A  +F  +Q + V +WN M+S Y   G+ E A+ +F+ M +  +    +++  ++   
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGY 454

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-------CMVDLLGRAGKLVEAVDLIKKMP 362
           N  GL  + +++F  M++   +  +PD +T       C    + + GK + +  L   MP
Sbjct: 455 NQNGLDGMALKFFSRMLSASSM--EPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMP 512

Query: 363 FKPQ--------PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
              Q         A  G++ +A R+   +D A  A +N+ +         YV+L +   A
Sbjct: 513 CSSQIMNALISTYAKSGSVETARRI---MDQAVVADLNVISFTALLEG--YVKLGDTKQA 567

Query: 415 MKKWD 419
            + +D
Sbjct: 568 REIFD 572


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/515 (43%), Positives = 316/515 (61%), Gaps = 9/515 (1%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKA 120
           +   D  SWN++I G V++     A   F  M  ++      +  ++++ +     +  A
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 121 VELFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           + +  +       A+     A+I  Y K GK+D A  +F +M  K++V+W +++ GY  N
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              E+ +KL   M   G+ P+  +++SVL  C+ L+ +  G+Q+H  + KS L    +  
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L++MY KCG + DA + F  +  +DV++W A+I GYAQ+G+G+ +L+ +D+M   G K
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           PD ITF+ LL AC+H GL+  G  YF++M   YGI   P+HY CM+DLLGR+GKL EA  
Sbjct: 241 PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKG 300

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
           L+ +M   P   ++  LL+ACRVHK L+L E AA NLF L P N+   YV L+N+Y+A  
Sbjct: 301 LLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMP-YVMLSNMYSAAG 359

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
           KW+D ARIR  M+   + K PGYSWIE  + V  F S DR HP    I+ K+ E+   +K
Sbjct: 360 KWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIK 419

Query: 477 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
            AGYVPD+ FALH   +EVKE  L +HSEKLA+AFGL+ VP G PIR+FKNLRVCGDCH 
Sbjct: 420 EAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHT 479

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A KY S +  R II+RD+  FHHF +G CSCGDYW
Sbjct: 480 AMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 140/331 (42%), Gaps = 53/331 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD-------------------VVSY 41
           M     V+WNS++ G  ++ G  +DA   F K+   D                   V+  
Sbjct: 1   MEFDDEVSWNSLILGCVRE-GFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQN 59

Query: 42  NIMLSCILLNSD------------DVVA-------AFDFFQRLPIKDTASWNTMISGFVQ 82
            I + C+++ +             D+ A       A   F ++  KD  SW ++++G+  
Sbjct: 60  AISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSH 119

Query: 83  KKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSV 132
             +  +A  LF  M      P++ +V  ++++S   E   +D   +    L K     S+
Sbjct: 120 NGSYEEAIKLFCKMRISGVYPDQIAV--ASVLSACAELTVMDFGQQIHATLVKSGLESSL 177

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
               ++++ Y K G +  A + FD MPT+++++W A+I GY +N   +  L+    MI  
Sbjct: 178 SVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIAT 237

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLED 251
           G +P+  +   +L  CSH   L  G+   + + K    K        +I +  + G L +
Sbjct: 238 GTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAE 297

Query: 252 ACKLFLE-IQRKDVVTWNAMISGYAQHGKGE 281
           A  L  + +   D V W A+++    H + E
Sbjct: 298 AKGLLNQMVVAPDAVVWKALLAACRVHKELE 328


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/623 (39%), Positives = 350/623 (56%), Gaps = 78/623 (12%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFD----------------------- 60
           A+++FDK+P  D V +N M++ ++ N   DD V  F                        
Sbjct: 157 ARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAE 216

Query: 61  --------FFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
                     Q L +K     D      +IS F + +++  AR LF  + + + VS++A+
Sbjct: 217 MQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNAL 276

Query: 108 ISGYIECGQLDKAVELFK----------------VAPVKSVVAW---------------- 135
           ISG+   G+ + AV+ F+                + PV S                    
Sbjct: 277 ISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGT 336

Query: 136 -------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                  TA+ + Y +  ++DLA +LFDE   K +  WNAMI+GY ++   E  + L + 
Sbjct: 337 ILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQE 396

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+     PN  +++S+L  C+ L +L  GK VHQL+    L ++    T LI MY KCG+
Sbjct: 397 MMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGN 456

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + +A +LF     K+ VTWN MI GY  HG G++AL+LF++M   G +P S+TF+++L A
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYA 516

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+HAGLV  G + F +MVN Y I    +HY CMVD+LGRAG+L +A++ I+KMP +P PA
Sbjct: 517 CSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPA 576

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++GTLL AC +HK  +LA  A+  LF L+P N  G YV L+NIY+  + +   A +R ++
Sbjct: 577 VWGTLLGACMIHKDTNLARVASERLFELDPGN-VGYYVLLSNIYSVERNFPKAASVREAV 635

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           K+ N+ K PG + IEV    H F  GDR H +  SI+ KL+EL  +M+  GY  +   AL
Sbjct: 636 KKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTAL 695

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
           H V EE KE +   HSEKLAIAFGLI    GT IR+ KNLRVC DCH ATK+IS I +R 
Sbjct: 696 HDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERV 755

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I+VRD  RFHHFKDG CSCGDYW
Sbjct: 756 IVVRDANRFHHFKDGICSCGDYW 778



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 181/395 (45%), Gaps = 70/395 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  + A+ LF  +P+PD+  +N+++     + D   ++  F+  L    T S +     F
Sbjct: 54  GATRHARALFFSVPKPDIFLFNVLIKGFSFSPD--ASSISFYTHLLKNTTLSPDNFTYAF 111

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                ++ + D  L M                 C      V+ F      ++   +A++ 
Sbjct: 112 A----ISASPDDNLGM-----------------CLHAHAVVDGFD----SNLFVASALVD 146

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y KF +V  A K+FD+MP ++ V WN MI G V N   +D +++ + M+  G+R ++++
Sbjct: 147 LYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTT 206

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +++VL   + +  +++G  +  L  K     D   LT LIS++ KC D++ A  LF  I+
Sbjct: 207 VATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIR 266

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL----------LACN 310
           + D+V++NA+ISG++ +G+ E A++ F ++   G +  S T V L+          LAC 
Sbjct: 267 KPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACC 326

Query: 311 HAGL-------------------------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
             G                          +DL  Q FD   ++  +AA    +  M+   
Sbjct: 327 IQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDES-SEKTVAA----WNAMISGY 381

Query: 346 GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
            ++G    A+ L ++M    F P P    ++LSAC
Sbjct: 382 AQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC 416



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 134/335 (40%), Gaps = 91/335 (27%)

Query: 12  VLAGFAKQRGKLKD---AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           VL G      K +D   A+ LF  I +PD+VSYN ++S    N +   A   F + L   
Sbjct: 241 VLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300

Query: 69  DTASWNTM------------------ISGFVQK--------------------KNMAKAR 90
              S +TM                  I GF  K                      +  AR
Sbjct: 301 QRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR 360

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA--------PV------------- 129
            LF    EK   +W+AMISGY + G  + A+ LF+          PV             
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 130 ------------------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
                             +++   TA+I  Y K G +  A +LFD    KN VTWN MI 
Sbjct: 421 ALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIF 480

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFK---S 227
           GY  + + ++ LKL   M+ LG +P++ +  SVL  CSH   ++ G ++ H +V K    
Sbjct: 481 GYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIE 540

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           PL +    +  ++    + G LE A    LE  RK
Sbjct: 541 PLAEHYACMVDILG---RAGQLEKA----LEFIRK 568


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/582 (40%), Positives = 350/582 (60%), Gaps = 13/582 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--A 58
           M +K T  WN++++    Q  +   A  LFD++  PD+VS+N +++       D+ A   
Sbjct: 206 MRLKDTSTWNTMIS-MHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALET 264

Query: 59  FDFFQRLPI--KDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYI 112
           F F  +      D  +  +++S    ++++   + +   +   +        +A+IS Y 
Sbjct: 265 FSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324

Query: 113 ECGQLDKAVELFKVA--PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           + G ++ A  + ++   P  +V+A+T+++ GY K G +D A  +FD +  +++V W AMI
Sbjct: 325 KSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            GY +N    D L L R+MI  G +PN  +L++VL   S L+SL  GKQ+H +  +    
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV 444

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +    LI+MY + G ++DA K+F  I   +D +TW +MI   AQHG G +A+ LF+K
Sbjct: 445 SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEK 504

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M    +KPD IT+V +L AC H GLV+ G  YF+ M N + I     HY CM+DLLGRAG
Sbjct: 505 MLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAG 564

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA + I+ MP +P    +G+LLS+CRVHK +DLA+ AA  L  ++P N+ G Y+ LA
Sbjct: 565 LLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNS-GAYLALA 623

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N  +A  KW+D A++R SMK+  V K  G+SW+++   VH F   D +HP+  +I+  + 
Sbjct: 624 NTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMIS 683

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           ++ K +K  G++PD    LH + +EVKEQ+L  HSEKLAIAF LI  P  T +R+ KNLR
Sbjct: 684 KIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLR 743

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH A +YIS + +REIIVRD TRFHHFKDG+CSC DYW
Sbjct: 744 VCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +++ Y++ G    A  LF   P+K+  +W  ++S + K G +D A ++FDE+P  + V+W
Sbjct: 54  LLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSW 113

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
             MI GY      +  +     M+  GI P   + ++VL  C+   +L +GK+VH  V K
Sbjct: 114 TTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVK 173

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                       L++MY KCGD   A  +F  ++ KD  TWN MIS + Q  + + AL L
Sbjct: 174 LGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALAL 233

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
           FD+M D    PD +++ +++    H G     ++ F  M+    +  KPD +T
Sbjct: 234 FDQMTD----PDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL--KPDKFT 280


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/485 (43%), Positives = 315/485 (64%), Gaps = 3/485 (0%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDK-AVELF-KVAPVKSVVAWTAMISGYMKFG 146
           +R +F  MPE N +SW+A+I+ Y++ G+ DK A+ELF K+          ++IS Y + G
Sbjct: 14  SRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYARSG 73

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
           +++ A K FD +  KNLV++NA++ GY +N  +E+   L   +   GI  +A + +S+L 
Sbjct: 74  RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 133

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
           G + + ++  G+Q+H  + K     +      LISMY +CG++E A ++F E++ ++V++
Sbjct: 134 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 193

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L AC+H G++  G ++F+SM 
Sbjct: 194 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 253

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
            ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      ++ TLL ACRVH   +L 
Sbjct: 254 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 313

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
             AA  +    P + A  Y+ L+N++A+  +W DV +IR SMKE N++K  G SWIEV  
Sbjct: 314 RHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 372

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            VH F  G+  HP+   I+++L +L  ++K  GY+PD +F LH + EE KEQ L  HSEK
Sbjct: 373 RVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEK 432

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           +A+AFGLI      PIR+FKNLRVCGDCH A KYIS    REI+VRD+ RFHH K+G CS
Sbjct: 433 IAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCS 492

Query: 567 CGDYW 571
           C DYW
Sbjct: 493 CNDYW 497



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 44/219 (20%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSSV 204
           G VD + K+F++MP  N+++W A+I  YV++   + + ++L   MI   +    +S    
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNS---- 64

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
                                             LISMY + G +EDA K F  +  K++
Sbjct: 65  ----------------------------------LISMYARSGRMEDARKAFDILFEKNL 90

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V++NA++ GYA++ K E+A  LF+++ D G+   + TF +LL      G +  G Q    
Sbjct: 91  VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 150

Query: 325 MVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           ++       K +   C  ++ +  R G +  A  +  +M
Sbjct: 151 LLKG---GYKSNQCICNALISMYSRCGNIEAAFQVFNEM 186



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/300 (18%), Positives = 131/300 (43%), Gaps = 46/300 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDV------------ 55
           NS+++ +A+  G+++DA++ FD + + ++VSYN ++      L S++             
Sbjct: 63  NSLISMYARS-GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 121

Query: 56  -VAAFDFFQRLP-----------------------IKDTASWNTMISGFVQKKNMAKARD 91
            ++AF F   L                          +    N +IS + +  N+  A  
Sbjct: 122 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 181

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGK 147
           +F  M ++N +SW++MI+G+ + G   +A+E+F    +     + + + A++S     G 
Sbjct: 182 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 241

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVL 205
           +   +K F+ M  ++ +         + +     GL  + +  +  + +  +A    ++L
Sbjct: 242 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 301

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C    + +LG+   +++ +     D  A   L +++   G  +D  K+   ++ ++++
Sbjct: 302 GACRVHGNTELGRHAAEMILEQEP-DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/664 (37%), Positives = 367/664 (55%), Gaps = 97/664 (14%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSY-NIMLSCILLNS---- 52
           ++  V+WNSV++ +         A  LF K+       PDV+S  NI+ +C  L +    
Sbjct: 325 IQDLVSWNSVVSAYM-WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRG 383

Query: 53  -------------DDVVA----------------AFDFFQRLPIKDTASWNTMISGFVQK 83
                        DDV                  A   FQR+  KD  SWN M++G+ Q 
Sbjct: 384 RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQA 443

Query: 84  KNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFK-------------- 125
             +  A  LF  M E+N     V+W+A+I+GY + GQ  +A+++F+              
Sbjct: 444 GRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTL 503

Query: 126 VAPVKSVVAWTAMISG---------------------------------YMKFGKVDLAE 152
           V+ + + V+  A++ G                                 Y K    ++A 
Sbjct: 504 VSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVAR 563

Query: 153 KLFDEMPTKN--LVTWNAMIAGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGC 208
           K+FD +  K+  +VTW  MI GY ++  A + L+L   M  +   I+PN  +LS  L+ C
Sbjct: 564 KMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVAC 623

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           + L++L+ G+QVH  V ++        +   LI MY K GD++ A  +F  + +++ V+W
Sbjct: 624 ARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSW 683

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            ++++GY  HG+GE ALR+FD+M+   + PD ITF+ +L AC+H+G+VD GI +F+ M  
Sbjct: 684 TSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           D+G+   P+HY CMVDL GRAG+L EA+ LI +MP +P P ++  LLSACR+H  ++L E
Sbjct: 744 DFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGE 803

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
           FAA  L  L   N  G Y  L+NIYA  ++W DVARIR +MK   + K PG SWI+    
Sbjct: 804 FAANRLLELESGND-GSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKG 862

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           V  F  GDR HP+   I+E L +L +R+K  GYVP   FALH V +E K  LL  HSEKL
Sbjct: 863 VATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKL 922

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           A+A+G++ +    PIR+ KNLR+CGDCH A  YIS I + EII+RD++RFHHFK+G+CSC
Sbjct: 923 ALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSC 982

Query: 568 GDYW 571
             YW
Sbjct: 983 KGYW 986



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 164/380 (43%), Gaps = 57/380 (15%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS--AMISGYIECGQ 116
           FD      I+D  SWN+++S ++   +   A  LF  M  ++ +S    ++++    C  
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 117 L-----DKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           L      + V  F +    V  V    A++  Y K GK++ A K+F  M  K++V+WNAM
Sbjct: 377 LAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAM 436

Query: 170 IAGY------------------------------VENSWAEDG-----LKLLRMMIGLGI 194
           + GY                              V   +A+ G     L + R M   G 
Sbjct: 437 VTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS 496

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--------SPLCKDTTALTPLISMYCKC 246
           RPN  +L S+L  C  + +L  GK+ H    K         P   D   +  LI MY KC
Sbjct: 497 RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 247 GDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITF 302
              E A K+F  +  K  DVVTW  MI GYAQHG    AL+LF  M   D+ +KP+  T 
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTL 616

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
              L+AC     +  G Q    ++ ++  +       C++D+  ++G +  A  +   MP
Sbjct: 617 SCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP 676

Query: 363 FKPQPAIFGTLLSACRVHKR 382
            +     + +L++   +H R
Sbjct: 677 -QRNAVSWTSLMTGYGMHGR 695



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 20/274 (7%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTAS--WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-- 105
           + S+    A    +RLP   ++   WN +I    +  ++   RD+F    +  S+ W+  
Sbjct: 202 IASNSTAYAILLLERLPPSPSSVFWWNQLIR---RALHLGSPRDVFTLYRQMKSLGWTPD 258

Query: 106 ---------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
                    A  +             + +     +V    A++S Y K G +  A  +FD
Sbjct: 259 HYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFD 318

Query: 157 EM---PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS 212
           ++     ++LV+WN++++ Y+  S A   L L   M    +  P+  SL ++L  C+ L+
Sbjct: 319 DLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLA 378

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +   G+QVH    +S L  D      ++ MY KCG +E+A K+F  ++ KDVV+WNAM++
Sbjct: 379 ASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVT 438

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           GY+Q G+ E AL LF++M +E ++ D +T+ A++
Sbjct: 439 GYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/514 (43%), Positives = 322/514 (62%), Gaps = 2/514 (0%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           N  D+ AA   F     +D  SWN MI G+V++  M   R +F  M  ++ +SW+ +I+G
Sbjct: 47  NGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIING 106

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y   G++D+A  LF   P +++V+W +M+SG++K G V+ A  LF EMP +++V+WN+M+
Sbjct: 107 YAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSML 166

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A Y +     + L L   M  +G++P  +++ S+L  C+HL +L  G  +H  +  + + 
Sbjct: 167 ACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIE 226

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++   T L+ MY KCG +  A ++F  ++ KDV+ WN +I+G A HG  ++A +LF +M
Sbjct: 227 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEM 286

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           K+  ++P+ ITFVA+L AC+HAG+VD G +  D M + YGI  K +HY C++DLL RAG 
Sbjct: 287 KEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGL 346

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA++LI  MP +P P+  G LL  CR+H   +L E     L NL P + +G Y+ L+N
Sbjct: 347 LEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCH-SGRYILLSN 405

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYAA KKWDD  ++R  MK N + K+PG S IE+  +VH F +GD  HPE   I++KL E
Sbjct: 406 IYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNE 465

Query: 471 LEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +  R+K A GY  D    L  + EE KE  L  HSEKLAIA+GL+ +     IR+ KNLR
Sbjct: 466 IHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLR 525

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           VC DCH  TK IS +  REIIVRD  RFHHF+DG
Sbjct: 526 VCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 165/367 (44%), Gaps = 82/367 (22%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD--- 60
           +  V+WN+++ G+ K RG++   + +FD++   DV+S+N      ++N   +V   D   
Sbjct: 64  RDVVSWNAMIDGYVK-RGEMGHTRMVFDRMVCRDVISWN-----TIINGYAIVGKIDEAK 117

Query: 61  -FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F  +P ++  SWN+M+SGFV+  N+ +A  LF  MP ++ VSW++M++ Y +CG+ ++
Sbjct: 118 RLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 177

Query: 120 AVELFK------VAPVKSVV---------------------------------AWTAMIS 140
           A+ LF       V P ++ V                                   TA++ 
Sbjct: 178 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 237

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K GK+ LA ++F+ M +K+++ WN +IAG   +   ++  +L + M    + PN  +
Sbjct: 238 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDIT 297

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
             ++L  CSH   +  G+++   +  S        + P +  Y                 
Sbjct: 298 FVAMLSACSHAGMVDEGQKLLDCMSSS------YGIEPKVEHY----------------- 334

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
                  + +I   A+ G  E+A+ L   M    M+P+     ALL  C   G  +LG  
Sbjct: 335 -------DCVIDLLARAGLLEEAMELIGTMP---MEPNPSALGALLGGCRIHGNFELGEM 384

Query: 321 YFDSMVN 327
               ++N
Sbjct: 385 VGKRLIN 391



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           V+  C+  S    G  VH  V KS    D+  +  LI +Y    DL  A +LF     +D
Sbjct: 6   VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WNAMI GY + G+      +FD+M    +  D I++  ++      G +D   + FD
Sbjct: 66  VVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            M     ++     +  M+    + G + EA  L  +MP +
Sbjct: 122 EMPERNLVS-----WNSMLSGFVKCGNVEEAFGLFSEMPCR 157


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/569 (41%), Positives = 343/569 (60%), Gaps = 14/569 (2%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G+ K +  LF  +P+ +V+S+NI+++   L   D+ +A   F  +  ++ A+
Sbjct: 103 LLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILING-YLQLGDLESAQKLFDEMSERNIAT 161

Query: 73  WNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVE---- 122
           WN MI+G  Q +   +A  LF  M      P++   +  +++ G      L    E    
Sbjct: 162 WNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDE--FTLGSVLRGCAGLRSLLAGQEVHAC 219

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           L K     S V  +++   Y+K G +   EKL   MP + +V WN +IAG  +N   E+ 
Sbjct: 220 LLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEV 279

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L    MM   G RP+  +  SVL  CS L++L  G+Q+H  V K+        ++ LISM
Sbjct: 280 LNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISM 339

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y + G LED+ K F++ +  DVV W++MI+ Y  HG+GE+AL LF +M+D  M+ + +TF
Sbjct: 340 YSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTF 399

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++LL AC+H+GL + G +YFD MV  Y +  + +HYTC+VDLLGRAG+L EA  +I+ MP
Sbjct: 400 LSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMP 459

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +P   I+ TLL+AC++HK  ++AE  +  +  L+P +AA  YV L+NI+A+ + W +V+
Sbjct: 460 VQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAAS-YVLLSNIHASARNWLNVS 518

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           +IR +M++ +V K PG SW+E+  +VH+F  GD+ HP+   I   LKEL   +K  GYVP
Sbjct: 519 QIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVP 578

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           +L   LH +  E KE  L  HSEK AIAF L+      PIRV KNLRVC DCH A K IS
Sbjct: 579 ELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCIS 638

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I  REIIVRD +RFHHFKDG CSCG+YW
Sbjct: 639 RIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 43/342 (12%)

Query: 21  GKLKDAQELFDKI--PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G++K A + F       P + S+ ++ SCI L S   +        L I    S +  IS
Sbjct: 45  GRIKQAYDTFTSEIWSDPSLFSH-LLQSCIKLGS---LFGGKQVHSLIITSGGSKDKFIS 100

Query: 79  G----FVQKKNMAKAR-DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                F  K    K+   LF  MP +N +S++ +I+GY++ G L+ A +LF     +++ 
Sbjct: 101 NHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIA 160

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            W AMI+G  +F                                + +  L L + M GLG
Sbjct: 161 TWNAMIAGLTQF-------------------------------EFNKQALSLFKEMYGLG 189

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             P+  +L SVL GC+ L SL  G++VH  + K      +   + L  MY K G L D  
Sbjct: 190 FLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGE 249

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           KL   +  + VV WN +I+G AQ+G  E+ L  ++ MK  G +PD ITFV++L AC+   
Sbjct: 250 KLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELA 309

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            +  G Q   + V   G ++     + ++ +  R+G L +++
Sbjct: 310 TLGQG-QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSI 350


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/620 (40%), Positives = 363/620 (58%), Gaps = 51/620 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAA 58
           M VK  V+W S+LAG+ +Q G  + A +LF ++    +       + +L  L +D  V  
Sbjct: 153 MRVKNVVSWTSLLAGY-RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEK 211

Query: 59  FDFFQRLPIK---DTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 + IK   D+  +  N+M++ + +   ++ A+ +F +M  +N+VSW++MI+G++ 
Sbjct: 212 GVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVT 271

Query: 114 CGQLDKAVELF------KVAPVKSVVAW-------------------------------- 135
            G   +A ELF       V   +++ A                                 
Sbjct: 272 NGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNI 331

Query: 136 -TAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGL 192
            TA++  Y K  ++D A KLF  M   +N+V+W A+I+GYV+N   +  + L  +M    
Sbjct: 332 KTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREE 391

Query: 193 GIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           G+ PN  + SSVL  C+   +S++ GKQ H    KS         + L++MY K G++E 
Sbjct: 392 GVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIES 451

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F     +D+V+WN+MISGYAQHG G+K+L++F++M+ + ++ D ITF+ ++ AC H
Sbjct: 452 ANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTH 511

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AGLV+ G +YFD MV DY I    +HY+CMVDL  RAG L +A+DLI KMPF     I+ 
Sbjct: 512 AGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWR 571

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           TLL+ACRVH  + L E AA  L +L P ++A  YV L+NIYA    W + A++R  M   
Sbjct: 572 TLLAACRVHLNVQLGELAAEKLISLQPQDSAA-YVLLSNIYATAGNWQERAKVRKLMDMK 630

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            V K  GYSWIEV      F +GD  HP+   I+ KL+EL  R+K AGY PD ++ LH V
Sbjct: 631 KVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDV 690

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE +L  HSE+LAIAFGLI  P GTPI++ KNLRVCGDCH   K IS IE R+I+V
Sbjct: 691 EEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVV 750

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD+ RFHHFK G+CSCGDYW
Sbjct: 751 RDSNRFHHFKGGSCSCGDYW 770



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 178/355 (50%), Gaps = 24/355 (6%)

Query: 29  LFDKIPQPDV------------VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM 76
           LFD+I    V            VS    L  + + ++ V      F  + +K+  SW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL----FKVAP 128
           ++G+ Q     +A  LF  M     + N  +++A++ G    G ++K V++     K   
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
             ++    +M++ Y K   V  A+ +FD M  +N V+WN+MIAG+V N    +  +L   
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G++   +  ++V+  C+++  +   KQ+H  V K+    D    T L+  Y KC +
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 249 LEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 306
           ++DA KLF  +   ++VV+W A+ISGY Q+G+ ++A+ LF +M ++EG++P+  TF ++L
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404

Query: 307 LACNH-AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
            AC      V+ G Q+    +   G +      + +V +  + G +  A ++ K+
Sbjct: 405 NACAAPTASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAKRGNIESANEVFKR 458



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 8/300 (2%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           +Q G+ K  +     +  P  V +N   S        +  +   F   P +  +  N ++
Sbjct: 5   RQLGRSKRQKRFTQSLSGPYDVVFNPKTSLSSSKLSTLSHSQQLFDETPQQGLSRNNHLL 64

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQL-DKAV------ELFKVAPV 129
             F +     +A +LFL +    S +  + +S  ++ CG L D+ V      +  K   V
Sbjct: 65  FEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFV 124

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           + V   T+++  YMK   V+  E++FDEM  KN+V+W +++AGY +N   E  LKL   M
Sbjct: 125 EDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM 184

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              GI+PN  + ++VL G +   +++ G QVH +V KS L         +++MY K   +
Sbjct: 185 QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMV 244

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            DA  +F  ++ ++ V+WN+MI+G+  +G   +A  LF +M+ EG+K     F  ++  C
Sbjct: 245 SDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLC 304



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           +++LFDE P + L   N ++  +  N   ++ L L   +   G   + SSLS VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L    +GKQVH    K    +D +  T L+ MY K   +ED  ++F E++ K+VV+W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ++GY Q+G  E+AL+LF +M+ EG+KP+  TF A+L      G V+ G+Q   +MV   G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           + +       MV++  ++  + +A  +   M  + + A+    + A  V   LDL  F
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAF 279


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/605 (41%), Positives = 352/605 (58%), Gaps = 46/605 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  G    A+ +FD++   D+ S+N M++ + +    +  A   F+++  +D
Sbjct: 185 NSLLNMYAKC-GDPMMAKFVFDRMVVRDISSWNAMIA-LHMQVGQMDLAMAQFEQMAERD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-------PEK----------------------- 99
             +WN+MISGF Q+    +A D+F  M       P++                       
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302

Query: 100 ----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKS--VVAWTAMISGYMKFGK 147
                     + +  +A+IS Y  CG ++ A  L +    K   +  +TA++ GY+K G 
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           ++ A+ +F  +  +++V W AMI GY ++    + + L R M+G G RPN+ +L+++L  
Sbjct: 363 MNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVT 266
            S L+SL  GKQ+H    KS      +    LI+MY K G++  A + F  I+  +D V+
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W +MI   AQHG  E+AL LF+ M  EG++PD IT+V +  AC HAGLV+ G QYFD M 
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           +   I     HY CMVDL GRAG L EA + I+KMP +P    +G+LLSACRVHK +DL 
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           + AA  L  L P N+ G Y  LAN+Y+A  KW++ A+IR SMK+  V K  G+SWIEV  
Sbjct: 603 KVAAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            VH F   D  HPE   I+  +K++   +K  GYVPD    LH + EEVKEQ+L  HSEK
Sbjct: 662 KVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEK 721

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LAIAFGLI  P  T +R+ KNLRVC DCH A K+IS +  REIIVRDTTRFHHFKDG CS
Sbjct: 722 LAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCS 781

Query: 567 CGDYW 571
           C DYW
Sbjct: 782 CRDYW 786



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 192/413 (46%), Gaps = 66/413 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML----------SCILL 50
           M ++T  +WN+VL+ ++K RG +    E FD++PQ D VS+  M+            I +
Sbjct: 75  MPLRTAFSWNTVLSAYSK-RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRV 133

Query: 51  NSDDV---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-A 106
             D V   +    F     +   A+   M +G        K     + +  + +VS S +
Sbjct: 134 MGDMVKEGIEPTQFTLTNVLASVAATRCMETG-------KKVHSFIVKLGLRGNVSVSNS 186

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +++ Y +CG    A  +F    V+ + +W AMI+ +M+ G++DLA   F++M  +++VTW
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 167 NAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           N+MI+G+ +  +    L +  +M+    + P+  +L+SVL  C++L  L +GKQ+H  + 
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKL------------------------------ 255
            +        L  LISMY +CG +E A +L                              
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQA 366

Query: 256 ---FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
              F+ ++ +DVV W AMI GY QHG   +A+ LF  M   G +P+S T  A+L   +  
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSL 426

Query: 313 GLVDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLV---EAVDLIK 359
             +  G Q   S V     Y ++        ++ +  +AG +     A DLI+
Sbjct: 427 ASLSHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGNITSASRAFDLIR 475



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 162/356 (45%), Gaps = 35/356 (9%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +      AR LF  MP + + SW+ ++S Y + G +D   E F   P +  V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEM------PTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           +WT MI GY   G+   A ++  +M      PT+   T   ++A        E G K+  
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ--FTLTNVLASVAATRCMETGKKVHS 170

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            ++ LG+R N S  +S+L   +      + K     VF   + +D ++   +I+++ + G
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK----FVFDRMVVRDISSWNAMIALHMQVG 226

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 306
            ++ A   F ++  +D+VTWN+MISG+ Q G   +AL +F KM +D  + PD  T  ++L
Sbjct: 227 QMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVL 286

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC +   + +G Q    +V   G          ++ +  R G +  A  LI++      
Sbjct: 287 SACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRLIEQ------ 339

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
                      R  K L +  F A+    L+     G   Q  NI+ ++K  D VA
Sbjct: 340 -----------RGTKDLKIEGFTAL----LDGYIKLGDMNQAKNIFVSLKDRDVVA 380



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKCG 247
           P   SLS++L  C++L    + K         VH  V KS L      +  L+++Y K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
               A KLF E+  +   +WN ++S Y++ G  +     FD++     + DS+++  +++
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 119

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
              + G     I+    MV + GI  +P  +T
Sbjct: 120 GYKNIGQYHKAIRVMGDMVKE-GI--EPTQFT 148


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/591 (39%), Positives = 346/591 (58%), Gaps = 47/591 (7%)

Query: 26  AQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
           A++LFD+ P  + D  ++  +++  + N DD+VAA +  + +      +WN MISG+V +
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRN-DDLVAARELLEGMTDHIAVAWNAMISGYVHR 252

Query: 84  KNMAKARDLFLAMP----EKNSVSWSAMISG----------------------------- 110
               +A DL   M     + +  +++++IS                              
Sbjct: 253 GFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV 312

Query: 111 ----------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
                     Y  CG+L +A  +F   PVK +V+W A++SG +   +++ A  +F EMP 
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPV 372

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++L+TW  MI+G  +N + E+GLKL   M   G+ P   + +  +  CS L SL  G+Q+
Sbjct: 373 RSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQL 432

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  + +       +    LI+MY +CG +E A  +FL +   D V+WNAMI+  AQHG G
Sbjct: 433 HSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHG 492

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A++L++KM  E + PD ITF+ +L AC+HAGLV  G  YFD+M   YGI  + DHY+ 
Sbjct: 493 VQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSR 552

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           ++DLL RAG   EA ++ + MPF+P   I+  LL+ C +H  ++L   AA  L  L P  
Sbjct: 553 LIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMP-Q 611

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y+ L+N+YAA+ +WD+VAR+R  M+E  V K PG SWIEV  +VH F   D VHPE
Sbjct: 612 QDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPE 671

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
           + +++  L++L   M+  GYVPD +F LH +  E KE  L  HSEKLA+ +G++K+PLG 
Sbjct: 672 VHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGA 731

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IRVFKNLR+CGDCH A KYIS +  REIIVRD  RFHHF++G CSC +YW
Sbjct: 732 TIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 193/427 (45%), Gaps = 92/427 (21%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQK 83
           A+ LFDKIP+PD+V+   MLS     + ++  A   F   P  I+DT S+N MI+ F   
Sbjct: 50  ARYLFDKIPKPDIVAATTMLSA-YSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHS 108

Query: 84  KNMAKARDLFLAM------PEKNSVS-------------------------W-------- 104
            +   A  LF+ M      P+  + S                         W        
Sbjct: 109 HDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSV 168

Query: 105 -SAMISGYIECGQ---------LDKAVELFKVAPV--KSVVAWTAMISGYMKFGKVDLAE 152
            +A++S Y+ C           +  A +LF  AP   +   AWT +I+GY++   +  A 
Sbjct: 169 LNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAAR 228

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           +L + M     V WNAMI+GYV   + E+   LLR M  LGI+ +  + +SV+   S+  
Sbjct: 229 ELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAG 288

Query: 213 SLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
              +G+QVH  V ++ +        +    LI++Y +CG L +A ++F ++  KD+V+WN
Sbjct: 289 LFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWN 348

Query: 269 A-------------------------------MISGYAQHGKGEKALRLFDKMKDEGMKP 297
           A                               MISG AQ+G GE+ L+LF++MK EG++P
Sbjct: 349 AILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEP 408

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
               +   + +C+  G +D G Q   S +   G  +       ++ +  R G LVEA D 
Sbjct: 409 CDYAYAGAIASCSVLGSLDNG-QQLHSQIIQLGHDSSLSVGNALITMYSRCG-LVEAADT 466

Query: 358 I-KKMPF 363
           +   MP+
Sbjct: 467 VFLTMPY 473



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 149/361 (41%), Gaps = 80/361 (22%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  + +  N+  AR LF  +P+ + V+ + M+S Y   G +  A +LF   P     
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATP----- 89

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
                                   M  ++ V++NAMI  +  +      L+L   M  LG
Sbjct: 90  ------------------------MSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG 125

Query: 194 IRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFK----------------------SPLC 230
             P+  + SSVL   S ++  +   +Q+H  VFK                      SPL 
Sbjct: 126 FVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLV 185

Query: 231 --------------------KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
                               +D  A T +I+ Y +  DL  A +L   +     V WNAM
Sbjct: 186 NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAM 245

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ISGY   G  E+A  L  +M   G++ D  T+ +++ A ++AGL ++G Q    ++    
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT-- 303

Query: 331 IAAKPDHY-----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
           +     H+       ++ L  R GKLVEA  +  KMP K   + +  +LS C   +R++ 
Sbjct: 304 VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-WNAILSGCVNARRIEE 362

Query: 386 A 386
           A
Sbjct: 363 A 363



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 132/318 (41%), Gaps = 50/318 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  V+WN++L+G    R ++++A  +F ++P                          
Sbjct: 339 MPVKDLVSWNAILSGCVNAR-RIEEANSIFREMP-------------------------- 371

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
                 ++   +W  MISG  Q     +   LF  M     E    +++  I+     G 
Sbjct: 372 ------VRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGS 425

Query: 117 LDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           LD   +L     ++    S+    A+I+ Y + G V+ A+ +F  MP  + V+WNAMIA 
Sbjct: 426 LDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAA 485

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
             ++      ++L   M+   I P+  +  ++L  CSH   ++ G+     +    +C  
Sbjct: 486 LAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTM---RVCYG 542

Query: 233 TTA----LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLF 287
            T      + LI + C+ G   +A  +   +        W A+++G   HG  E  ++  
Sbjct: 543 ITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAA 602

Query: 288 DKMKDEGMKPDSITFVAL 305
           D++  E M     T+++L
Sbjct: 603 DRLL-ELMPQQDGTYISL 619



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 33/133 (24%)

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR------- 261
           + LS     + VH  +  S        +  LI  YCK  ++  A  LF +I +       
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 262 --------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
                                     +D V++NAMI+ ++    G  AL+LF +MK  G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 296 KPDSITFVALLLA 308
            PD  TF ++L A
Sbjct: 127 VPDPFTFSSVLGA 139


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 334/579 (57%), Gaps = 44/579 (7%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFL 94
           P  +  N +L  +  +   +  A      LP  D  S+NT+++   +  + +A AR LF 
Sbjct: 58  PSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFD 117

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFK-------VAPVKS---------------- 131
            MP ++  SWSA++S +   GQ   A+ +++        A V +                
Sbjct: 118 RMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARC 177

Query: 132 -------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                               V W+A+   Y K G+VD A  +FD MP +++V+W AM+  
Sbjct: 178 ARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVER 237

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +     +G +L   M+  GI+PN  + + VL  C+  +S +LGKQVH  + KS     
Sbjct: 238 YFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDS 297

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             A + L+ MY K GD+  A ++F  + + D+V+W AMISGYAQ+G+ ++ALR FD +  
Sbjct: 298 CFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLR 357

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G +PD +TFV +L AC HAGLVD G+  F S+ ++YGI    DHY C++DLL R+G   
Sbjct: 358 SGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFE 417

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            A ++I  M  KP   ++ +LL  CR+HK + LA +AA  LF + P N A  YV LANIY
Sbjct: 418 RAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPA-TYVTLANIY 476

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A++  +D+V   R  M+   + KMP  SWIEVGT +H F  GD++HP+   ++  LK+L 
Sbjct: 477 ASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLY 536

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            +M+  GYV D  F LH V +E K+Q + +HSE+LA+AFG+I  P G PI+VFKNLR+CG
Sbjct: 537 VKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICG 596

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K IS I +REIIVRD+ RFHHFK+G+CSC DYW
Sbjct: 597 DCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/543 (44%), Positives = 323/543 (59%), Gaps = 41/543 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---- 124
           DT + NT+++ +     +  AR +F  M +K  VSW+ MI  + +  Q ++AV LF    
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 125 ---KVAPV---------------------------------KSVVAWTAMISGYMKFGKV 148
               V P                                  + VV  T ++  Y K G V
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            LA  LFD+   KNL +WN MI G+VE+S  E+ L L R M   GI+ +  +++S+LL C
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           +HL +L+LGK +H  + K  +  D    T L+ MY KCG +E A ++F E+  KDV+TW 
Sbjct: 299 THLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWT 358

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           A+I G A  G+ E AL+ FD+M  +G+KPD+ITFV +L AC+HAG VD GI +F+SM + 
Sbjct: 359 ALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDT 418

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           YGI    +HY  +VD+LGRAG++ EA +LIK MP  P   + G LL ACR+H  L+ AE 
Sbjct: 419 YGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAER 478

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           AA  L  ++P + +G YV L+NIY + KKW++  R R  M E  + K PG S IEV  VV
Sbjct: 479 AAKQLLEIDPYH-SGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVV 537

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEF  GD  H +   I+E L+++  ++K AGYVPD    L  + EE KE  L  HSEKLA
Sbjct: 538 HEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLA 597

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           IAFGL+   +GTPIRV KNLR+C DCH ATK IS +  REIIVRD  RFHHFKDGTCSC 
Sbjct: 598 IAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCR 657

Query: 569 DYW 571
            +W
Sbjct: 658 GFW 660



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 164/342 (47%), Gaps = 12/342 (3%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
            FD      +V++     C L  S  +  A   F ++P   + + N++I G   K    +
Sbjct: 17  FFDPFTASKIVAF-----CSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQE 71

Query: 89  ARDLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYM 143
           A   +  M  +  +       S +  C    +  ++     K+       A   +++ Y 
Sbjct: 72  ALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYS 131

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLS 202
             G +  A K+FD+M  K +V+W  MI  + +     + ++L  RMM    ++PN  +L 
Sbjct: 132 NCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLV 191

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           +VL  C+    L + K++H+ + +    +     T L+ +YCKCG ++ A  LF + Q K
Sbjct: 192 NVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEK 251

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           ++ +WN MI+G+ +    E+AL LF +M+ +G+K D +T  +LLLAC H G ++LG ++ 
Sbjct: 252 NLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWL 310

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            + +    I       T +VD+  + G +  A+ +  +MP K
Sbjct: 311 HAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEK 352



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 138/343 (40%), Gaps = 49/343 (14%)

Query: 2   NVK-TTVNWNSVLAGFAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           NVK   V   +VL   A+ R    +K   E  D+      V  N +L  +      V  A
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQL 117
            D F +   K+  SWN MI+G V+  N  +A  LF  M  K        M S  + C  L
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHL 301

Query: 118 DKAVELFK--VAPVK------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
             A+EL K   A +K       V   TA++  Y K G ++ A ++F EMP K+++TW A+
Sbjct: 302 G-ALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTAL 360

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG------------ 217
           I G      AE+ L+    M   G++P+A +   VL  CSH   +  G            
Sbjct: 361 ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYG 420

Query: 218 ---------------------KQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---EDAC 253
                                 +  +L+   P+  D   L  L+      G+L   E A 
Sbjct: 421 IQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAA 480

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           K  LEI      T+  + + Y    K E+A R  + M + GM+
Sbjct: 481 KQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMR 523


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/621 (40%), Positives = 354/621 (57%), Gaps = 57/621 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSDDV- 55
           M  +  V+WN+++AGF+ Q G  K A EL     D+  +PD    +I L  +L  + DV 
Sbjct: 208 MPERDLVSWNTIIAGFS-QNGFAKKALELVLRMQDEGQRPD----SITLVTVLPAAADVG 262

Query: 56  -----VAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMIS 109
                 +   +  R       + +T ++    K  ++  AR +F  M +K  VSW++M+ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 110 GYIECGQLDKAVELFK------VAPV---------------------------------K 130
           GY++ G+ +KA+ +F+      + P                                   
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGS 382

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            +    ++IS Y K  +VD+A  +F+ +  +  V+WNAMI GY +N    + L     M 
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            LG++P++ ++ SV+   + LS  +  K +H L+ +S L K+    T L+ MY KCG + 
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A KLF  I  + V+TWNAMI GY  HG G  AL LFDKMK   ++P+ IT+++++ AC+
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GLVD G+++F SM  DYG+    DHY  MVDLLGRAG++ EA D I+ MP  P   ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G    AC++HK +++ E AA  LF LNP +  G +V LANIYA+  KW  VA +R +M++
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNP-DEGGYHVLLANIYASTSKWSKVAEVRKTMEK 681

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K PG S +E+   VH F SG   HP+   I+  L+EL   +K AGYVPD    L  
Sbjct: 682 KGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILD- 740

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V ++V+EQLL  HSEKLAIAFGL+    GT I V KNLRVCGDCH ATKYIS +  REII
Sbjct: 741 VEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREII 800

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD  RFHHFK+G CSCGDYW
Sbjct: 801 VRDMQRFHHFKNGICSCGDYW 821



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 200/421 (47%), Gaps = 56/421 (13%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A+  F R+P +D  SWNT+I+GF Q     KA +L L M ++    +S++   ++    +
Sbjct: 201 AYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAAD 260

Query: 114 CGQL--DKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G L   K++  + +     K V   TA+   Y K G V+ A  +FD M  K +V+WN+M
Sbjct: 261 VGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSM 320

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           + GYV+N   E  + +   M+  GI P   ++   L  C+ L  L+ GK VH+ V +  L
Sbjct: 321 MDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNL 380

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D + +  LISMY KC  ++ A  +F  +  +  V+WNAMI GYAQ+G+  +AL  F +
Sbjct: 381 GSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSE 440

Query: 290 MKDEGMKPDSITFVALLLA------CNHA-----------------------------GL 314
           MK  GMKPDS T V+++ A        HA                             G 
Sbjct: 441 MKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFG 371
           + +  + FD M++D  +      +  M+D  G  G    A+DL  KM     +P    + 
Sbjct: 501 IHMARKLFD-MISDRHVIT----WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYL 555

Query: 372 TLLSACRVHKRLD--LAEFAAMNL-FNLNPA-NAAGCYVQLANIYAAMKK-WDDVARIRL 426
           +++SAC     +D  L  F +M   + L P+ +  G  V L      +K+ WD +  + +
Sbjct: 556 SVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPI 615

Query: 427 S 427
           S
Sbjct: 616 S 616



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 143/265 (53%), Gaps = 14/265 (5%)

Query: 66  PIKDT--ASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQL 117
           PI D   A ++TM+ G+ +  ++  A      M      P   + ++   + G  +   L
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCG--DNADL 163

Query: 118 DKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            +  E    L   +   +V A T +++ Y K  ++D A K+FD MP ++LV+WN +IAG+
Sbjct: 164 KRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGF 223

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N +A+  L+L+  M   G RP++ +L +VL   + +  L +GK +H    ++   K  
Sbjct: 224 SQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLV 283

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T L  MY KCG +E A  +F  + +K VV+WN+M+ GY Q+G+ EKA+ +F+KM +E
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 294 GMKPDSITFVALLLACNHAGLVDLG 318
           G+ P  +T +  L AC   G ++ G
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERG 368



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 2/223 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++S + K+G ++ A ++F+ +  K    ++ M+ GY +NS  E  L  L  M    ++
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   + + +L  C   + L+ GK++H  +  +    +  A+T +++MY KC  ++DA K+
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +D+V+WN +I+G++Q+G  +KAL L  +M+DEG +PDSIT V +L A    GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +G       +   G A   +  T + D+  + G  VE   LI
Sbjct: 265 MVGKSIHGYAIR-AGFAKLVNISTALADMYSKCGS-VETARLI 305



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 218 KQVHQ---LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           K++HQ   LV K+ L  +    T L+S++ K G + +A ++F  I  K    ++ M+ GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A++   E AL    +M+ + +KP    F  LL  C     +  G +    ++ +   AA 
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAAN 181

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               T +V++  +  ++ +A  +  +MP
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMP 209


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 351/608 (57%), Gaps = 43/608 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK+     +++ G A Q G++ DA+ LF++IP+P VVS+N +++  + N   V  A + F
Sbjct: 319 VKSIACRTALITGLA-QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGM-VNEAKELF 376

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------------------- 99
            ++P ++T SW  MI+G+ Q     +A  L   +                          
Sbjct: 377 DKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALE 436

Query: 100 ----------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
                           NS + +A+I+ Y +C  ++ A ++F     K +V+W + ++  +
Sbjct: 437 TGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALV 496

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           +   +D A   FD M +++ V+W  +I+ Y     + + +   + M      PN+  L+ 
Sbjct: 497 QNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTI 556

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C  L + ++G+Q+H +  K  +  +      LISMY KCG   D+ ++F  ++ +D
Sbjct: 557 LLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERD 615

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           + TWN +I+GYAQHG G +A++++  M+  G+ P+ +TFV LL AC+HAGLVD G ++F 
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           SM  DYG+   P+HY CMVDLLGR G +  A   I  MP +P   I+  LL AC++HK  
Sbjct: 676 SMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNA 735

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           ++ + AA  LF + P+NA G YV L+NIY+++  W +VA +R  MK+  V+K PG SW +
Sbjct: 736 EIGKRAAEKLFRIEPSNA-GNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQ 794

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +   +H F +GD+ H ++  I   L+EL   +K  GYVPD EF LH + EE KE  LL+H
Sbjct: 795 IKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYH 854

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SEKLA+A+ L+  P G PI++ KNLR+CGDCH   K++S + KR+I +RD  RFHHF++G
Sbjct: 855 SEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNG 914

Query: 564 TCSCGDYW 571
           +CSC D+W
Sbjct: 915 SCSCEDFW 922



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 176/317 (55%), Gaps = 8/317 (2%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DVV    +L+    ++  +  A  FF+ +  ++  +W+TMI+       +  A  ++ 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
             P K+    +A+I+G  +CG++D A  LF+  P   VV+W A+I+GYM+ G V+ A++L
Sbjct: 316 RDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKEL 375

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD+MP +N ++W  MIAGY +N  +E+ L LL+ +   G+ P+ SSL+S+   CS++ +L
Sbjct: 376 FDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVAL 435

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + G QVH L  K     ++ A   LI+MY KC ++E A ++F  +  KD+V+WN+ ++  
Sbjct: 436 ETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAAL 495

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            Q+   ++A   FD M    +  D +++  ++ A  HA   +  +  F +M  ++ +   
Sbjct: 496 VQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 335 PDHYTCMVDLLGRAGKL 351
           P     +  LLG  G L
Sbjct: 552 P----ILTILLGVCGSL 564



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 176/345 (51%), Gaps = 11/345 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ +A+E+FD +P+ D++++N M+S    N     AA D +  +   +  +   ++SG+
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPD-AARDLYDAISGGNMRTGAILLSGY 106

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   + +AR +F  M E+N+V+W+AMIS Y++ G +  A  LF   P + V +W +M++
Sbjct: 107 GRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLT 166

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           GY    ++  A  LF++MP +NLV+W  MI+GY           +   M   G+ P+ S+
Sbjct: 167 GYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSN 226

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKLFLEI 259
            +S L     L +L + + +  L  K+   +D    T ++++Y +    L+ A K F  +
Sbjct: 227 FASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM 286

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             ++  TW+ MI+  +  G+ + A+ ++++   + +   +    AL+      G +D   
Sbjct: 287 IERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQCGRIDDAR 342

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             F+ +     ++     +  ++    + G + EA +L  KMPF+
Sbjct: 343 ILFEQIPEPIVVS-----WNALITGYMQNGMVNEAKELFDKMPFR 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 148/321 (46%), Gaps = 16/321 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           SA I      G++ +A E+F   P + ++AW +MIS Y   G  D A  L+D +   N+ 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           T   +++GY         L+  R+  G+ +  N  + ++++        + + ++    +
Sbjct: 98  TGAILLSGYGRLGRV---LEARRVFDGM-LERNTVAWNAMISCYVQNGDITMARR----L 149

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           F +   +D ++   +++ YC    + DA  LF ++  +++V+W  MISGY +     KA 
Sbjct: 150 FDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAW 209

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F KM  EG+ PD   F + L A    G +D+ ++    +    G        T ++++
Sbjct: 210 DIFCKMHREGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNV 268

Query: 345 LGRAGKLVE-AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
             R   +++ A+   + M  +     + T+++A     R+D    AA+ ++  +P  +  
Sbjct: 269 YSRDTSVLDTAIKFFESM-IERNEYTWSTMIAALSHGGRID----AAIAVYERDPVKSIA 323

Query: 404 CYVQLANIYAAMKKWDDVARI 424
           C   L    A   + DD ARI
Sbjct: 324 CRTALITGLAQCGRIDD-ARI 343


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 351/608 (57%), Gaps = 43/608 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK+     +++ G A Q G++ DA+ LF++IP+P VVS+N +++  + N   V  A + F
Sbjct: 319 VKSIACRTALITGLA-QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGM-VNEAKELF 376

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------------------- 99
            ++P ++T SW  MI+G+ Q     +A  L   +                          
Sbjct: 377 DKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALE 436

Query: 100 ----------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
                           NS + +A+I+ Y +C  ++ A ++F     K +V+W + ++  +
Sbjct: 437 TGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALV 496

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           +   +D A   FD M +++ V+W  +I+ Y     + + +   + M      PN+  L+ 
Sbjct: 497 QNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTI 556

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C  L + ++G+Q+H +  K  +  +      LISMY KCG   D+ ++F  ++ +D
Sbjct: 557 LLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERD 615

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           + TWN +I+GYAQHG G +A++++  M+  G+ P+ +TFV LL AC+HAGLVD G ++F 
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           SM  DYG+   P+HY CMVDLLGR G +  A   I  MP +P   I+  LL AC++HK  
Sbjct: 676 SMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNA 735

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           ++ + AA  LF + P+NA G YV L+NIY+++  W +VA +R  MK+  V+K PG SW +
Sbjct: 736 EIGKRAAEKLFRIEPSNA-GNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQ 794

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +   +H F +GD+ H ++  I   L+EL   +K  GYVPD EF LH + EE KE  LL+H
Sbjct: 795 IKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYH 854

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SEKLA+A+ L+  P G PI++ KNLR+CGDCH   K++S + KR+I +RD  RFHHF++G
Sbjct: 855 SEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNG 914

Query: 564 TCSCGDYW 571
           +CSC D+W
Sbjct: 915 SCSCEDFW 922



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 176/317 (55%), Gaps = 8/317 (2%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DVV    +L+    ++  +  A  FF+ +  ++  +W+TMI+       +  A  ++ 
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
             P K+    +A+I+G  +CG++D A  LF+  P   VV+W A+I+GYM+ G V+ A++L
Sbjct: 316 RDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKEL 375

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD+MP +N ++W  MIAGY +N  +E+ L LL+ +   G+ P+ SSL+S+   CS++ +L
Sbjct: 376 FDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVAL 435

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + G QVH L  K     ++ A   LI+MY KC ++E A ++F  +  KD+V+WN+ ++  
Sbjct: 436 ETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAAL 495

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            Q+   ++A   FD M    +  D +++  ++ A  HA   +  +  F +M  ++ +   
Sbjct: 496 VQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 335 PDHYTCMVDLLGRAGKL 351
           P     +  LLG  G L
Sbjct: 552 P----ILTILLGVCGSL 564



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 176/345 (51%), Gaps = 11/345 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ +A+E+FD +P+ D++++N M+S    N     AA D +  +   +  +   ++SG+
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPD-AARDLYDAISGGNMRTGAILLSGY 106

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   + +AR +F  M E+N+V+W+AMIS Y++ G +  A  LF   P + V +W +M++
Sbjct: 107 GRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLT 166

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           GY    ++  A  LF++MP +NLV+W  MI+GY           +   M   G+ P+ S+
Sbjct: 167 GYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSN 226

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKLFLEI 259
            +S L     L +L + + +  L  K+   +D    T ++++Y +    L+ A K F  +
Sbjct: 227 FASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM 286

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             ++  TW+ MI+  +  G+ + A+ ++++   + +   +    AL+      G +D   
Sbjct: 287 IERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQCGRIDDAR 342

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             F+ +     ++     +  ++    + G + EA +L  KMPF+
Sbjct: 343 ILFEQIPEPIVVS-----WNALITGYMQNGMVNEAKELFDKMPFR 382



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 148/321 (46%), Gaps = 16/321 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           SA I      G++ +A E+F   P + ++AW +MIS Y   G  D A  L+D +   N+ 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           T   +++GY         L+  R+  G+ +  N  + ++++        + + ++    +
Sbjct: 98  TGAILLSGYGRLGRV---LEARRVFDGM-LERNTVAWNAMISCYVQNGDITMARR----L 149

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           F +   +D ++   +++ YC    + DA  LF ++  +++V+W  MISGY +     KA 
Sbjct: 150 FDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAW 209

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F KM  EG+ PD   F + L A    G +D+ ++    +    G        T ++++
Sbjct: 210 DIFCKMHREGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNV 268

Query: 345 LGRAGKLVE-AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
             R   +++ A+   + M  +     + T+++A     R+D    AA+ ++  +P  +  
Sbjct: 269 YSRDTSVLDTAIKFFESM-IERNEYTWSTMIAALSHGGRID----AAIAVYERDPVKSIA 323

Query: 404 CYVQLANIYAAMKKWDDVARI 424
           C   L    A   + DD ARI
Sbjct: 324 CRTALITGLAQCGRIDD-ARI 343


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/617 (39%), Positives = 347/617 (56%), Gaps = 48/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF- 59
           M  +  V W  ++ G+A + GK  ++  LF+K+ +  VV   + +  ++     + A   
Sbjct: 91  MQERDLVTWTVMIGGYA-ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 60  -----DFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                D+ QR   + D      MI  + +   +  AR++F  M EKN +SWSAMI+ Y  
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 114 CGQLDKAVELFKVA------PVKSVVA--------------------------------- 134
            GQ  KA++LF++       P K  +A                                 
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFV 269

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A++  Y K  +++ A  LFD+MP ++LVTW  MI GY E   A + L L   M   G+
Sbjct: 270 CAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV 329

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  ++ +V+  C+ L ++   + +   + +     D    T +I M+ KCG +E A +
Sbjct: 330 VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESARE 389

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  ++ K+V++W+AMI+ Y  HG+G KAL LF  M   G+ P+ IT V+LL AC+HAGL
Sbjct: 390 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGL 449

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G+++F  M  DY + A   HYTC+VDLLGRAG+L EA+ LI+ M  +    ++G  L
Sbjct: 450 VEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFL 509

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            ACR HK + LAE AA +L  L P N  G Y+ L+NIYA   +W+DVA+ R  M +  + 
Sbjct: 510 GACRTHKDVVLAEKAATSLLELQPQN-PGHYILLSNIYANAGRWEDVAKTRDLMSQRRLK 568

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K+PG++WIEV    H+F  GD  HP    I+E LK L  +++L GYVPD  F LH V EE
Sbjct: 569 KIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEE 628

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           +K  +L  HSEKLAIAFGLI  P  TPIR+ KNLRVCGDCH   K +SAI  R IIVRD 
Sbjct: 629 LKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDA 688

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFK+G CSCGDYW
Sbjct: 689 NRFHHFKEGACSCGDYW 705



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 172/334 (51%), Gaps = 50/334 (14%)

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---------- 124
            ++  +V+ + +  AR LF  M E++ V+W+ MI GY ECG+ ++++ LF          
Sbjct: 70  ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 129

Query: 125 -KVAPVKSVVAW----------------------------TAMISGYMKFGKVDLAEKLF 155
            KVA V  V A                             TAMI  Y K G V+ A ++F
Sbjct: 130 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 189

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           D M  KN+++W+AMIA Y  +      L L RMM+  G+ P+  +L+S+L  CS L +LQ
Sbjct: 190 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQ 249

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           +G+ +H +V+K  L  D      L+ MY KC ++EDA  LF ++  +D+VTW  MI GYA
Sbjct: 250 MGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA 309

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           + G   ++L LFDKM++EG+ PD +  V ++ AC       LG  +    ++DY I  K 
Sbjct: 310 ECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC-----AKLGAMHKARTIDDY-IQRKK 363

Query: 336 DHY-----TCMVDLLGRAGKLVEAVDLIKKMPFK 364
                   T M+D+  + G +  A ++  +M  K
Sbjct: 364 FQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK 397



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 130/260 (50%), Gaps = 36/260 (13%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A++  Y++C +++ A  LF     + +V WT MI GY + GK + +  LF++M  +   
Sbjct: 69  AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREE--- 125

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
                                       G+ P+  ++ +V+  C+ L ++   + +   +
Sbjct: 126 ----------------------------GVVPDKVAMVTVVFACAKLGAMHKARIIDDYI 157

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            +     D    T +I MY KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL
Sbjct: 158 QRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 217

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MV 342
            LF  M   GM PD IT  +LL AC+    + +G +    +V  +G+    DH+ C  +V
Sbjct: 218 DLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGL--DLDHFVCAALV 274

Query: 343 DLLGRAGKLVEAVDLIKKMP 362
           D+ G+  ++ +A  L  KMP
Sbjct: 275 DMYGKCREIEDARFLFDKMP 294



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 11/201 (5%)

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M+ G+ +     +     R +I  G RP+  +L  V+  C  L +LQ+G+ +H +V+K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L  D      L+ MY KC ++EDA  LF ++Q +D+VTW  MI GYA+ GK  ++L LF+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVD 343
           KM++EG+ PD +  V ++ AC       LG  +   +++DY I  K         T M+D
Sbjct: 121 KMREEGVVPDKVAMVTVVFAC-----AKLGAMHKARIIDDY-IQRKKFQLDVILGTAMID 174

Query: 344 LLGRAGKLVEAVDLIKKMPFK 364
           +  + G +  A ++  +M  K
Sbjct: 175 MYAKCGCVESAREIFDRMEEK 195


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/572 (41%), Positives = 339/572 (59%), Gaps = 13/572 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  +AK  G+L     +F  IP+ DVVS+N M++   +       A + FQ +  ++
Sbjct: 175 NSLIHFYAKC-GELGLGYRVFVNIPRRDVVSWNSMITA-FVQGGCPEEALELFQEMETQN 232

Query: 70  TASWNTMISGFVQ---KKNMAKARDLFLAMPEKNSVSWS-----AMISGYIECGQLDKAV 121
                  + G +    KK+  +      +  E+N +  S     AM+  Y +CG ++ A 
Sbjct: 233 VKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAK 292

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            LF   P K +V+WT M+ GY K G+ D A+ +FD MP +++  WNA+I+ Y +    ++
Sbjct: 293 RLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKE 352

Query: 182 GLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            L+L   + +    +P+  +L S L  C+ L ++ LG  +H  + K  +  +    T LI
Sbjct: 353 ALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLI 412

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MYCKCGDL+ A  +F  ++RKDV  W+AMI+G A HG G+ A+ LF KM+++ +KP+++
Sbjct: 413 DMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAV 472

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF  +L AC+H GLV+ G  +F+ M   YG+     HY CMVD+LGRAG L EAV+LI+K
Sbjct: 473 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 532

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP  P  +++G LL AC +H+ + LAE A   L  L P N  G YV L+NIYA   KWD 
Sbjct: 533 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGN-HGAYVLLSNIYAKAGKWDR 591

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           V+ +R  M++  + K PG S IEV  +VHEF  GD  HP    I+ KL E+  R++  GY
Sbjct: 592 VSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGY 651

Query: 481 VPDLEFALHAVGEE-VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           VP+    L  V EE VKEQ L  HSEKLAIAFGLI      PIR+ KNLRVCGDCH   K
Sbjct: 652 VPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAK 711

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +S +  REI++RD  RFHHF++G CSC DYW
Sbjct: 712 LVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 160/335 (47%), Gaps = 42/335 (12%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAMISGYIEC 114
           F ++P  +  +WNT+I  +    N  ++  +FL M       P+K +  +    +  +E 
Sbjct: 92  FDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEE 151

Query: 115 GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
               KA    + KV     V    ++I  Y K G++ L  ++F  +P +++V+WN+MI  
Sbjct: 152 LFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITA 211

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           +V+    E+ L+L + M    ++PN  ++  VL  C+  S  + G+ VH  + ++ + + 
Sbjct: 212 FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGES 271

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-------------------------- 266
            T    ++ MY KCG +EDA +LF ++  KD+V+                          
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPN 331

Query: 267 -----WNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQ 320
                WNA+IS Y Q GK ++AL LF +++  +  KPD +T V+ L AC   G +DLG  
Sbjct: 332 QDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-G 390

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           +    +   G+       T ++D+  + G L +A+
Sbjct: 391 WIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSS 203
           F  +D A+++FD++P  NL TWN +I  Y  +S     L + LRM+      P+  +   
Sbjct: 82  FPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPF 141

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           ++   S L  L  GK  H +V K  L  D   L  LI  Y KCG+L    ++F+ I R+D
Sbjct: 142 LIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRD 201

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WN+MI+ + Q G  E+AL LF +M+ + +KP+ IT V +L AC      + G ++  
Sbjct: 202 VVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWVH 260

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           S +    I         M+D+  + G + +A  L  KMP K
Sbjct: 261 SYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK 301



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 22/315 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W ++L G+AK  G+   AQ +FD +P  D+ ++N ++S           A +
Sbjct: 298 MPEKDIVSWTTMLVGYAK-IGEYDAAQGIFDAMPNQDIAAWNALISA-YEQCGKPKEALE 355

Query: 61  FFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGY 111
            F  L +  TA  +     + +S   Q   M     + + + ++    N    +++I  Y
Sbjct: 356 LFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMY 415

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT----KNLVTWN 167
            +CG L KA+ +F     K V  W+AMI+G    G    A  LF +M       N VT+ 
Sbjct: 416 CKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFT 475

Query: 168 AMIAGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++         E+G      M +  G+ P     + ++     L    L ++  +L+ K
Sbjct: 476 NILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMV---DILGRAGLLEEAVELIEK 532

Query: 227 SPLCKDTT---ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
            P+    +   AL    +++      E AC   +E++  +   +  + + YA+ GK ++ 
Sbjct: 533 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRV 592

Query: 284 LRLFDKMKDEGMKPD 298
             L   M+D G+K +
Sbjct: 593 SGLRKLMRDVGLKKE 607


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/617 (40%), Positives = 360/617 (58%), Gaps = 50/617 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-VSYNIMLSCILLNSDDVVAAF 59
           M  +  V+WNS++AGF      L +A ELF ++    V ++  I  + I L ++  +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDL-EAFELFYRMRLEGVKLTQTIFATVIKLCAN--IKEM 310

Query: 60  DFFQRLP---IKDTASWN-----TMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISG 110
            F ++L    IK+ + ++      ++  + +   +  A  LF  M   +N VSW+A+ISG
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 111 YIECGQLDKAVELF-----------------------KVAPVK------------SVVAW 135
           Y++ G+ D+A+ LF                        V+P +            S    
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVG 430

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           TA+   Y K G  + A K+F+ +  K++V W+AM++GY +    E  +K+   +   G+ 
Sbjct: 431 TALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE 490

Query: 196 PNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           PN  + SSVL  C+   +S++ GKQ H    KS         + L++MY K G++E A +
Sbjct: 491 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE 550

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F     +D+V+WN+MISGYAQHG G+K+L++F++M+ + ++ D ITF+ ++ AC HAGL
Sbjct: 551 VFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGL 610

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G +YFD MV DY I    +HY+CMVDL  RAG L +A+DLI KMPF     I+ TLL
Sbjct: 611 VNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLL 670

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           +ACRVH  + L E AA  L +L P ++A  YV L+NIYA    W + A++R  M    V 
Sbjct: 671 AACRVHLNVQLGELAAEKLISLQPQDSAA-YVLLSNIYATAGNWQERAKVRKLMDMKKVK 729

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K  GYSWIEV      F +GD  HP+   I+ KL+EL  R+K AGY PD ++ LH V EE
Sbjct: 730 KEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEE 789

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE +L  HSE+LAIAFGLI  P GTPI++ KNLRVCGDCH   K IS IE R+I+VRD+
Sbjct: 790 HKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDS 849

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFK G+CSCGDYW
Sbjct: 850 NRFHHFKGGSCSCGDYW 866



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 198/408 (48%), Gaps = 54/408 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAA 58
           M VK  V+W S+LAG+ +Q G  + A +LF ++    +       + +L  L +D  V  
Sbjct: 153 MRVKNVVSWTSLLAGY-RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEK 211

Query: 59  FDFFQRLPIK---DTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 + IK   D+  +  N+M++ + +   ++ A+ +F +M  +N+VSW++MI+G++ 
Sbjct: 212 GVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVT 271

Query: 114 CGQLDKAVELF------KVAPVKSVVAW-------------------------------- 135
            G   +A ELF       V   +++ A                                 
Sbjct: 272 NGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNI 331

Query: 136 -TAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            TA++  Y K  ++D A KLF  M   +N+V+W A+I+GYV+N   +  + L   M   G
Sbjct: 332 KTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREG 391

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +RPN  + S++L   + +S      Q+H LV K+      +  T L   Y K GD  +A 
Sbjct: 392 VRPNHFTYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAA 447

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-A 312
           K+F  I  KD+V W+AM+SGYAQ G  E A+++F ++  EG++P+  TF ++L AC    
Sbjct: 448 KIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPT 507

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
             V+ G Q+    +   G +      + +V +  + G +  A ++ K+
Sbjct: 508 ASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAKRGNIESANEVFKR 554



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 155/301 (51%), Gaps = 21/301 (6%)

Query: 29  LFDKIPQPDV------------VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM 76
           LFD+I    V            VS    L  + + ++ V      F  + +K+  SW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL----FKVAP 128
           ++G+ Q     +A  LF  M     + N  +++A++ G    G ++K V++     K   
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
             ++    +M++ Y K   V  A+ +FD M  +N V+WN+MIAG+V N    +  +L   
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G++   +  ++V+  C+++  +   KQ+H  V K+    D    T L+  Y KC +
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 249 LEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++DA KLF  +   ++VV+W A+ISGY Q+G+ ++A+ LF +M+ EG++P+  T+  +L 
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 308 A 308
           A
Sbjct: 405 A 405



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 8/300 (2%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           +Q G+ K  +     +  P  V +N   S        +  +   F   P +  +  N ++
Sbjct: 5   RQLGRSKRQKRFTQSLSGPYDVVFNPKTSLSSSKLSTLSHSQQLFDETPQQGLSRNNHLL 64

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQL-DKAV------ELFKVAPV 129
             F +     +A +LFL +    S +  + +S  ++ CG L D+ V      +  K   V
Sbjct: 65  FEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFV 124

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           + V   T+++  YMK   V+  E++FDEM  KN+V+W +++AGY +N   E  LKL   M
Sbjct: 125 EDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM 184

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              GI+PN  + ++VL G +   +++ G QVH +V KS L         +++MY K   +
Sbjct: 185 QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMV 244

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            DA  +F  ++ ++ V+WN+MI+G+  +G   +A  LF +M+ EG+K     F  ++  C
Sbjct: 245 SDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLC 304



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           +++LFDE P + L   N ++  +  N   ++ L L   +   G   + SSLS VL  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L    +GKQVH    K    +D +  T L+ MY K   +ED  ++F E++ K+VV+W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ++GY Q+G  E+AL+LF +M+ EG+KP+  TF A+L      G V+ G+Q   +MV   G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           + +       MV++  ++  + +A  +   M  + + A+    + A  V   LDL  F
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAF 279


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/539 (42%), Positives = 331/539 (61%), Gaps = 42/539 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VA 127
             ++S + +  +   A  +FL M  ++ V+WSAM++ Y   G   +A+ LF+      VA
Sbjct: 115 TALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVA 174

Query: 128 PVK---------------------------------SVVAWTAMISGYMKFGKVDLAEKL 154
           P K                                  VV  TA+++ Y K G+++ A + 
Sbjct: 175 PNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEA 234

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F ++  KN+V W+A+ A Y  N    D +++L  M   G+ PN+++  SVL  C+ +++L
Sbjct: 235 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAAL 294

Query: 215 QLGKQVHQL--VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           + G+++H+   V    L  D   LT L++MY KCG+L  A  +F +I   D+V WN++I+
Sbjct: 295 KQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIA 354

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
             AQHG+ EKAL LF++M+ EG++P  ITF ++L AC+HAG++D G ++F S + D+GI 
Sbjct: 355 TNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIF 414

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
            + +H+ CMVDLLGRAG +V++ DL+  MPF+P P  +   L ACR ++ +D A +AA N
Sbjct: 415 PEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAEN 474

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           LF L+P   A  YV L+N+YA   +W DVAR+R +M+    VK  G SWIEV   VHEF 
Sbjct: 475 LFQLDPRKRAP-YVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFI 533

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           SGD  HP +  IH +L+ L K MK AGYVPD E  LH V +EVKE ++ +HSEKLA+AF 
Sbjct: 534 SGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFA 593

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           L+  P G+PIRV KNLRVC DCH A+K+IS +  REI+VRD  RFH F++G CSCGDYW
Sbjct: 594 LLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 175/375 (46%), Gaps = 17/375 (4%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMI 108
           DD +A F   Q    K+  SW  M++ F + ++  +     R + L       V  S  +
Sbjct: 27  DDALAVFHGIQS---KNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFL 83

Query: 109 SGYIECGQLD--KAVEL--FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S   +  ++   ++++L        +  +  TA++S Y K G    A  +F  M  +++V
Sbjct: 84  SACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVV 143

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            W+AM+A Y  N    + L L R M   G+ PN  +L S L  C+ L  L+ G  +HQ V
Sbjct: 144 AWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRV 203

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
               +       T L+++Y KCG +E A + F +I  K+VV W+A+ + YA++ +   A+
Sbjct: 204 EAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAI 263

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMV 342
           R+  +M  EG+ P+S TFV++L AC     +  G +     ++  G   + D Y  T +V
Sbjct: 264 RVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQG-RRIHERIHVLGGGLESDVYVLTALV 322

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNPAN 400
           ++  + G L  A ++  K+       ++ +L++    H + +  L  F  M L  L P  
Sbjct: 323 NMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTI 381

Query: 401 AAGCYVQLANIYAAM 415
                V  A  +A M
Sbjct: 382 ITFTSVLFACSHAGM 396



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K  + D A  +F  + +KN+ +W  M+A + EN   +      R M+  GI P 
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPG 75

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              +S  L  C+    + +G+ +   +  + + +++   T L+S+Y K G   DA  +FL
Sbjct: 76  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFL 135

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +DVV W+AM++ YA++G   +AL LF +M  +G+ P+ +T V+ L AC   G +  
Sbjct: 136 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 195

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G       V   GI +     T +V+L G+ G++  A +   ++
Sbjct: 196 G-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI 238


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/557 (43%), Positives = 334/557 (59%), Gaps = 8/557 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD-TASWNTMISG 79
           G L  A+ +F++IP P   + N ++     N +    A  F+Q + ++       T  S 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRG-YTNKNLPRQAILFYQLMMLQGLDPDRFTFPSL 84

Query: 80  FVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           F     + + + L     +     ++   + +++ Y  CG L  A ++F     KSVV+W
Sbjct: 85  FKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSW 144

Query: 136 TAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             MI  Y ++     A KLF  M    NL  WN MI G+VE+S  E+ L L   M   G+
Sbjct: 145 ATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 204

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +  +++S+L+ C+HL +L+LGK +H  + K  +  D    T L+ MY KCG +E A +
Sbjct: 205 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 264

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E+  KDV+TW A+I G A  G+G KAL LF +M+   +KPD+ITFV +L AC+HAGL
Sbjct: 265 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 324

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ GI YF+SM N YGI    +HY CMVD+LGRAG++ EA DLI+ MP  P   +   LL
Sbjct: 325 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 384

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SACR+H  L +AE AA  L  L+P N  G YV L+NIY++MK W+   ++R  M E N+ 
Sbjct: 385 SACRIHGNLVVAERAAQQLIELDPKN-GGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 443

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG S IEVG VVHEF  GD  HP+   I+E L ++ +R+K AGYVPD    L  + E+
Sbjct: 444 KPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEK 503

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  L  HSEKLAIAFGL+    GTPIRV KNLRVC DCH A K+IS +  REIIVRD 
Sbjct: 504 EKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDR 563

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHF  G+CSC D+W
Sbjct: 564 NRFHHFTKGSCSCRDFW 580


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/573 (41%), Positives = 341/573 (59%), Gaps = 14/573 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S+++ +A+  G+L+DA+++FD   Q DVVS   +++    +  DV +A   F  +  +D
Sbjct: 122 TSLISMYARN-GRLEDARKVFDXSSQRDVVSCTALITG-YASRGDVRSARKVFDXITERD 179

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKN---------SVSWSAMISGYIECGQLDKA 120
             SWN MI+G+V+     +A +LF  M   N         SV  +   SG IE G+    
Sbjct: 180 VVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           +         S+    A I  Y K G V++A  LF+ +  K++V+WN +I GY   +  +
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTP 238
           + L L + M+  G  PN  ++ SVL  C+HL ++ +G+ +H  + K    +   +   T 
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTS 359

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI MY KCGD+E A ++F  +  K + +WNAMI G+A HG+   A  LF +M+  G++PD
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPD 419

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            IT V LL AC+H+GL+DLG   F S+  DY I  K +HY CM+DLLG AG   EA ++I
Sbjct: 420 DITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEII 479

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
             MP +P   I+ +LL AC++H  L+LAE  A  L  + P N+ G YV L+NIYA   +W
Sbjct: 480 HMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENS-GSYVLLSNIYATAGRW 538

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
           +DVARIR  +    + K+PG S IE+ +VVHEF  GD++HP+   I+  L+E++  ++ A
Sbjct: 539 EDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEA 598

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           G+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + V KNLRVC +CH AT
Sbjct: 599 GFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEAT 658

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K IS I KREI+ RD TRFHHF+DG CSC DYW
Sbjct: 659 KLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 202/393 (51%), Gaps = 30/393 (7%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTMISGFV 81
           A  +F+   +P+++ +N ML   L +S D+V+  + + R+     + +  ++  ++    
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRG-LASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCA 94

Query: 82  QKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           + K   + R +   +     E +  + +++IS Y   G+L+ A ++F  +  + VV+ TA
Sbjct: 95  KSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTA 154

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+GY   G V  A K+FD +  +++V+WNAMI GYVEN   E+ L+L + M+   +RP+
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLV-----FKSPLCKDTTALTPLISMYCKCGDLEDA 252
             +L SVL  C+   S++LG+++H LV     F S L      +   I +Y KCGD+E A
Sbjct: 215 EGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSL----KIVNAFIGLYSKCGDVEIA 270

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF  +  KDVV+WN +I GY      ++AL LF +M   G  P+ +T +++L AC H 
Sbjct: 271 SGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 330

Query: 313 GLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA- 368
           G +D+G     Y D  +   G+       T ++D+  + G +  A  +   M  K   + 
Sbjct: 331 GAIDIGRWIHVYIDKRLK--GVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSW 388

Query: 369 ---IFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
              IFG  +   R +   DL  F+ M    + P
Sbjct: 389 NAMIFGFAMHG-RANAAFDL--FSRMRKNGIEP 418



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 31/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+     NL+ WN M+ G   +S     L++   M+  G  PNA +   +
Sbjct: 30  FDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFL 89

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------ 252
           L  C+   + + G+Q+H  V K     D  A T LISMY + G LEDA            
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 253 --C-----------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
             C                 K+F  I  +DVV+WNAMI+GY ++   E+AL LF +M   
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V++L AC  +G ++LG +    + + +G  +        + L  + G +  
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 354 AVDLIKKMPFK 364
           A  L + +  K
Sbjct: 270 ASGLFEGLSCK 280


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/605 (40%), Positives = 360/605 (59%), Gaps = 46/605 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  G    A+ +FD++      S+N M+S  + +    +A   F Q +  +D
Sbjct: 184 NSLLNMYAKS-GDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIE-RD 241

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS------------------- 103
             SWN MISG+ Q     +A D+F  M       P+K +++                   
Sbjct: 242 VVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIH 301

Query: 104 --------------WSAMISGYIECGQLDKAVELFKVAPVKS--VVAWTAMISGYMKFGK 147
                          +A+IS Y + G ++ A ++ + + + +  V+A+TA++ GY+K G 
Sbjct: 302 AHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGD 361

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           ++ A ++FD +  +++V W AMI GYV+N + +D ++L R MI  G +PN  +L+++L  
Sbjct: 362 INPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSV 421

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVT 266
            S L+SL  G+Q+H    +S      +    LI+MY K G + DA  +F  I  ++D +T
Sbjct: 422 SSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTIT 481

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W +MI   AQHG GE+AL LF++M + G+KPD IT+V +L AC H GLV+ G  Y++ M 
Sbjct: 482 WTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQ 541

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           N + I   P HY CM+DL GRAG L EA   I+ MP +P    +G+LL++C+VHK ++LA
Sbjct: 542 NAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELA 601

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           E AA  L  + P N+ G Y  LAN+Y+A  +W++ A IR SMK+  V K  G+SW+++  
Sbjct: 602 EVAAERLLLIEPENS-GAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKN 660

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            VH F   D +HP+  +I+E + ++ K +K  G+VPD E  LH + EE+KEQ+L  HSEK
Sbjct: 661 KVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEK 720

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LAIAFGLI  P  T +R+ KNLRVC DCH A K+IS +  REIIVRD TRFHHFK+G CS
Sbjct: 721 LAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCS 780

Query: 567 CGDYW 571
           C DYW
Sbjct: 781 CRDYW 785



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 194/441 (43%), Gaps = 75/441 (17%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G + DA  +FD++P   V S+NI+LS        +  A   F+ +P  D+ S
Sbjct: 54  LMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSG-YAKGGRLEEAHRVFEEMPEPDSVS 112

Query: 73  WNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           W  MI G+ Q      A  +F  M      P + +++        +EC  + + V  F V
Sbjct: 113 WTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVV 172

Query: 127 A----------------------PV-----------KSVVAWTAMISGYMKFGKVDLAEK 153
                                  PV           KS  +W  MIS +M+ G VDLA+ 
Sbjct: 173 KHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQV 232

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLS 212
            F++M  +++V+WNAMI+GY ++ +  + L +  +M++    +P+  +L+S L  C++L 
Sbjct: 233 QFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLE 292

Query: 213 SLQLGKQVHQLVFKSPLCK---------------------------------DTTALTPL 239
           +L+LGKQ+H  + ++                                     D  A T L
Sbjct: 293 NLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTAL 352

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +  Y K GD+  A ++F  ++ +DVV W AMI GY Q+G  + A+ LF  M  EG KP++
Sbjct: 353 LDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNN 412

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            T   +L   +    +D G Q   S     G A+       ++ +  ++G + +A  +  
Sbjct: 413 YTLATMLSVSSSLASLDHGRQIHASATRS-GNASSVSVSNALITMYAKSGSINDARWVFN 471

Query: 360 KMPFKPQPAIFGTLLSACRVH 380
            + +K     + +++ A   H
Sbjct: 472 LIHWKRDTITWTSMIIALAQH 492



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 4/112 (3%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK +H  + K+ L      +  L++ Y K G + DA ++F E+  K V +WN ++SGYA+
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            G+ E+A R+F++M +    PDS+++ A+++  N  G  +  I  F  MV+D
Sbjct: 92  GGRLEEAHRVFEEMPE----PDSVSWTAMIVGYNQMGQFENAIGMFREMVSD 139


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/471 (44%), Positives = 304/471 (64%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y +CG+++ A ++F    ++ V +W A+++GY K G +D A  +F+ MP +N+V
Sbjct: 210 TSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIV 269

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +W  MI+GY ++  A+  L L   M+    G+RPN  ++ SVL  C+ LS+L+ G+Q+H+
Sbjct: 270 SWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE 329

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKG 280
           L  +  L  + + L  L +MY KCG L DA   F ++ R  K+++ WN MI+ YA +G G
Sbjct: 330 LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHG 389

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A+  F +M   G++PD ITF  LL  C+H+GLVD+G++YF+ M   Y I  + +HY C
Sbjct: 390 LQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYAC 449

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           + DLLGRAG+L EA  L+ +MP    P+I+G+LL+ACR H+ L++AE AA  LF L P N
Sbjct: 450 VADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPEN 509

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G YV L+N+YA   +W +V ++R  +K     K PG SWIE+    H F  GD  HP+
Sbjct: 510 T-GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQ 568

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L ++MK AGY PD  + LH + EE KE  L+ HSEKLA+AFG++  P  T
Sbjct: 569 GKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAET 628

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +RV KNLR+CGDCH A  +IS I  RE+IVRD  RFHHFK G CSCGDYW
Sbjct: 629 VLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 34/259 (13%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           + M++ Y   G +D +  +F+ +   + + +N+MI  Y    +AE  +     M   G  
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFT 168

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  +   VL     L S+ +GK VH L+ +  L  D    T LI +Y KCG++ DA K+
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228

Query: 256 FLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEKAL 284
           F  +  +DV +WNA                               MISGY+Q G  ++AL
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQAL 288

Query: 285 RLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
            LFD+M  +D G++P+ +T +++L AC     ++ G Q  + +    G+ +       + 
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALT 347

Query: 343 DLLGRAGKLVEAVDLIKKM 361
            +  + G LV+A +   K+
Sbjct: 348 AMYAKCGSLVDARNCFDKL 366



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 33/286 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA ++FD +   DV S+N +L+     S  + AA   F+R+P ++  SW TMISG+
Sbjct: 220 GEINDAGKVFDNMTIRDVSSWNALLAG-YTKSGCIDAALAIFERMPWRNIVSWTTMISGY 278

Query: 81  VQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQ---LDKAVELFKVA------- 127
            Q     +A  LF  M +++S    +W  ++S    C Q   L++  ++ ++A       
Sbjct: 279 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 338

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEM--PTKNLVTWNAMIAGYVENSWAEDGLKL 185
               ++A TAM   Y K G +  A   FD++    KNL+ WN MI  Y         +  
Sbjct: 339 NASVLIALTAM---YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 395

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC- 244
            R MI  GI+P+  + + +L GCSH   + +G +    +        T ++ P +  Y  
Sbjct: 396 FREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM------STTYSINPRVEHYAC 449

Query: 245 ------KCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA 283
                 + G L +A KL  E+        W ++++   +H   E A
Sbjct: 450 VADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   S + V    + L+ L+LG QVH  +    L       + +++ Y   GD++ +  +
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA------- 308
           F  I     + +N+MI  YA++G  E+ +  +  M   G   D  TF  +L +       
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 309 ----CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               C H  ++ +G+Q+      D  +A      T ++ L G+ G++ +A  +   M  +
Sbjct: 188 WMGKCVHGLILRIGLQF------DLYVA------TSLIILYGKCGEINDAGKVFDNMTIR 235


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/471 (44%), Positives = 304/471 (64%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y +CG+++ A ++F    ++ V +W A+++GY K G +D A  +F+ MP +N+V
Sbjct: 173 TSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIV 232

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +W  MI+GY ++  A+  L L   M+    G+RPN  ++ SVL  C+ LS+L+ G+Q+H+
Sbjct: 233 SWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE 292

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKG 280
           L  +  L  + + L  L +MY KCG L DA   F ++ R  K+++ WN MI+ YA +G G
Sbjct: 293 LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHG 352

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A+  F +M   G++PD ITF  LL  C+H+GLVD+G++YF+ M   Y I  + +HY C
Sbjct: 353 LQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYAC 412

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           + DLLGRAG+L EA  L+ +MP    P+I+G+LL+ACR H+ L++AE AA  LF L P N
Sbjct: 413 VADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPEN 472

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G YV L+N+YA   +W +V ++R  +K     K PG SWIE+    H F  GD  HP+
Sbjct: 473 T-GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQ 531

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L ++MK AGY PD  + LH + EE KE  L+ HSEKLA+AFG++  P  T
Sbjct: 532 GKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAET 591

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +RV KNLR+CGDCH A  +IS I  RE+IVRD  RFHHFK G CSCGDYW
Sbjct: 592 VLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 33/286 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA ++FD +   DV S+N +L+     S  + AA   F+R+P ++  SW TMISG+
Sbjct: 183 GEINDAGKVFDNMTIRDVSSWNALLAG-YTKSGCIDAALAIFERMPWRNIVSWTTMISGY 241

Query: 81  VQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQ---LDKAVELFKVA------- 127
            Q     +A  LF  M +++S    +W  ++S    C Q   L++  ++ ++A       
Sbjct: 242 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 301

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEM--PTKNLVTWNAMIAGYVENSWAEDGLKL 185
               ++A TAM   Y K G +  A   FD++    KNL+ WN MI  Y         +  
Sbjct: 302 NASVLIALTAM---YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 358

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC- 244
            R MI  GI+P+  + + +L GCSH   + +G +    +        T ++ P +  Y  
Sbjct: 359 FREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM------STTYSINPRVEHYAC 412

Query: 245 ------KCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQHGKGEKA 283
                 + G L +A KL  E+      + W ++++   +H   E A
Sbjct: 413 VADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 458



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 34/191 (17%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL     L S+ +GK VH L+ +  L  D    T LI +Y KCG++ DA K+F  +  +D
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRD 199

Query: 264 VVTWNA-------------------------------MISGYAQHGKGEKALRLFDKM-- 290
           V +WNA                               MISGY+Q G  ++AL LFD+M  
Sbjct: 200 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 259

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           +D G++P+ +T +++L AC     ++ G Q  + +    G+ +       +  +  + G 
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGS 318

Query: 351 LVEAVDLIKKM 361
           LV+A +   K+
Sbjct: 319 LVDARNCFDKL 329


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/520 (43%), Positives = 331/520 (63%), Gaps = 12/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
           FQ++ ++D  SWN++I+ + Q  +   AR  F  M      P+  ++   A I+      
Sbjct: 331 FQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDY 390

Query: 116 QLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           +  ++V  F +     +++VV   A++  Y K G +D A K+F+ +P K++V+WN +I+G
Sbjct: 391 KNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISG 450

Query: 173 YVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           Y +N  A + +++ RMM     I+ N  +  S+L   +H+ +LQ G ++H  + K+ L  
Sbjct: 451 YTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHL 510

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D    T LI +Y KCG L DA  LF ++ R+  V WNA+IS +  HG GEKAL+LF +M+
Sbjct: 511 DVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQ 570

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           DEG+KPD +TF++LL AC+H+GLVD G ++F  ++ +YGI     HY CMVDLLGRAG L
Sbjct: 571 DEGVKPDHVTFISLLSACSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFL 629

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
             A D IK MP  P  +I+G LL ACR+H  ++L +FA+  LF ++  N  G YV L+NI
Sbjct: 630 EMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENV-GYYVLLSNI 688

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA + KW+ V ++R   +E  + K PG+S IEV   V  F +G++ HP+   I+ +L+ L
Sbjct: 689 YANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRIL 748

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             +MK  GY+PD  F L  V E+ KE +L  HSE+LAIAFG+I  P  + IR+FKNLRVC
Sbjct: 749 TAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVC 808

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH ATK+IS I +REI+VRD+ RFHHFK+G CSCGDYW
Sbjct: 809 GDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 187/418 (44%), Gaps = 54/418 (12%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIEC 114
             FD  QR   KD  +WN+MIS +V+  +  +A D F  L +  K    +         C
Sbjct: 129 GTFDQIQR---KDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC 185

Query: 115 GQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
             L    ++    FK+     V    ++I  Y +FG V +A  LFD+MP +++ +WNAMI
Sbjct: 186 QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMI 245

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           +G ++N  A   L +L  M   GI  ++ +++S+L  C+ L  +     +H  V K  L 
Sbjct: 246 SGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLE 305

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            +      LI+MY K G+L DA K+F ++  +DVV+WN++I+ Y Q+     A   F KM
Sbjct: 306 FELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKM 365

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG---R 347
           +  G++PD +T V+L                         IAA+   Y     + G   R
Sbjct: 366 QLNGLEPDLLTLVSLA-----------------------SIAAQSRDYKNSRSVHGFIMR 402

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
            G L+EAV             + G   +   ++ +L + + +A  +FNL P      +  
Sbjct: 403 RGWLMEAV-------------VIGN--AVMDMYAKLGVID-SAHKVFNLIPVKDVVSWNT 446

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV---VHEFRSGDRVHPELV 462
           L + Y       +   +   M+E   +K+   +W+ +      V   + G R+H  L+
Sbjct: 447 LISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLI 504



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 187/431 (43%), Gaps = 82/431 (19%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A+ LFD +P  D+ S+N                                 MISG +Q  N
Sbjct: 226 ARSLFDDMPFRDMGSWN--------------------------------AMISGLIQNGN 253

Query: 86  MAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW-----T 136
            A+A D+   M       +SV+ ++++    + G +  A  L  +  +K  + +      
Sbjct: 254 AAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT-LIHLYVIKHGLEFELFVSN 312

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+I+ Y KFG +  A+K+F +M  +++V+WN++IA Y +N            M   G+ P
Sbjct: 313 ALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP 372

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKL 255
           +  +L S+    +     +  + VH  + +     +   +   ++ MY K G ++ A K+
Sbjct: 373 DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKV 432

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGL 314
           F  I  KDVV+WN +ISGY Q+G   +A+ ++  M++   +K +  T+V++L A  H G 
Sbjct: 433 FNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGA 492

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP------------ 362
           +  G++    ++    +       TC++DL G+ G+LV+A+ L  ++P            
Sbjct: 493 LQQGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIIS 551

Query: 363 ----------------------FKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNP 398
                                  KP    F +LLSAC     +D  +  F  M  + + P
Sbjct: 552 CHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKP 611

Query: 399 A-NAAGCYVQL 408
           +    GC V L
Sbjct: 612 SLKHYGCMVDL 622



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLRMMIGLGIRP 196
           +++ Y   G V L+   FD++  K++ TWN+MI+ YV N    + +    ++++    + 
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  +   VL  C  L     G+++H  VFK     D      LI MY + G +  A  LF
Sbjct: 174 DFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLF 230

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+  DS+T  ++L  C   G + 
Sbjct: 231 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIS 290

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
                    V  +G+  +      ++++  + G L +A  + ++M
Sbjct: 291 TA-TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           L K++H L+  S   +       L+++Y   GD+  +   F +IQRKDV TWN+MIS Y 
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 276 QHGKGEKALRLFDK-MKDEGMKPDSITFVALLLACN--------HAGLVDLGIQYFDSMV 326
           ++G   +A+  F + +     + D  TF  +L AC         H  +  LG Q+     
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQW----- 205

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRL 383
            D  +AA       ++ +  R G +  A  L   MPF+      A+   L+      + L
Sbjct: 206 -DVFVAAS------LIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQAL 258

Query: 384 DLAEFAAMNLFNLNPANAAGCY---VQLANIYAA 414
           D+ +   +   N++    A       QL +I  A
Sbjct: 259 DVLDEMRLEGINMDSVTVASILPVCAQLGDISTA 292


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/569 (39%), Positives = 341/569 (59%), Gaps = 10/569 (1%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---- 66
           S L   +  +  L  A ++F +I  P++  YN  +      S D   +F F+ +      
Sbjct: 51  SCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRG-FSGSKDPDKSFHFYVQSKRNGL 109

Query: 67  IKDTASWNTMISGFVQKKNM---AKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVE 122
           + D  ++  ++    QK ++    +A    +     + V   +++++ Y   G +  A  
Sbjct: 110 VPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASY 169

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F+      VV+WT+M++GY+K G V  A KLFD+MP KNLVTW+ MI+GY +NS+ +  
Sbjct: 170 VFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKA 229

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           ++L  ++   G+  N + + SV+  C+HL +L+LG++ H  + ++ +  +    T L+ M
Sbjct: 230 IELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDM 289

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y +CG ++ A  +F ++  +D ++W  +I+G+A HG  EKAL  F +M+  G+ P  ITF
Sbjct: 290 YARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITF 349

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            A+L AC+H GLV+ G++ F+SM  DY I  + +HY CMVDLLGRAGKL EA   + +MP
Sbjct: 350 TAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMP 409

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            KP   I+G LL ACR+HK  ++AE A   L  L P + +G YV L+NIYA   KW++V 
Sbjct: 410 MKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEH-SGYYVLLSNIYARTNKWENVE 468

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            IR  MKE  VVK PGY+  E+   VH+F  GD+ HPE+  I    +E+  +++LAGY  
Sbjct: 469 NIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTG 528

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           + + AL  + EE KE  +  HSEKLAIA+ +++     PIR+ KNLRVC DCH ATK IS
Sbjct: 529 NNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLIS 588

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            + +RE+IVRD  RFHHFK G CSC DYW
Sbjct: 589 KVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S L  C+ LS L++   +H  + ++    D  A + LIS+      L+ A ++F +IQ  
Sbjct: 20  SFLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNP 76

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           ++  +N+ I G++     +K+   + + K  G+ PD++T+  L+ AC   G +D+GIQ
Sbjct: 77  NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 53/222 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQR----------------------------------GKLKDA 26
           M  K  V W+ +++G+AK                                    G L+  
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELG 264

Query: 27  QELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQ 82
           +   D I + + ++ N++L   L++      + D     F +LP +D  SW T+I+GF  
Sbjct: 265 ERAHDYILR-NKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAM 323

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF-------KVAPVKS 131
                KA + F  M +       ++++A++S     G +++ +ELF       ++ P   
Sbjct: 324 HGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEP--R 381

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
           +  +  M+    + GK+  AEK  +EMP K N   W A++  
Sbjct: 382 LEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGA 423


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/436 (48%), Positives = 291/436 (66%), Gaps = 1/436 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A++  Y K G  D A  +F++M  K++++W +++ G V N   E+ L+L   M  +GI 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+   +++VL  C+ L+ L+ GKQVH    KS L    +    L+SMY KCG +EDA K+
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  ++ +DV+TW A+I GYAQ+G+G ++L  ++ M   G+KPD ITF+ LL AC+HAGLV
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G  YF SM   YGI   P+HY CM+DLLGR+GKL+EA +L+ +M  +P   ++  LL+
Sbjct: 186 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACRVH  ++L E AA NLF L P NA   YV L+N+Y+A  KW++ A+ R  MK   V K
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVP-YVLLSNLYSAAGKWEEAAKTRRLMKLRGVSK 304

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG SWIE+ + VH F S DR HP    I+ K+ E+   +K AGYVPD+ FALH + EE 
Sbjct: 305 EPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEG 364

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE  L +HSEKLA+AFGL+ +P G PIR+FKNLR+CGDCH A KY+S +  R +I+RD+ 
Sbjct: 365 KELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSN 424

Query: 556 RFHHFKDGTCSCGDYW 571
            FHHF++G CSC DYW
Sbjct: 425 CFHHFREGACSCSDYW 440



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 43/315 (13%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           AFD F+++  KD  SW ++++G V   +  +A  LF  M       + +  +A++S   E
Sbjct: 21  AFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAE 80

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              L+   ++     K     S+    +++S Y K G ++ A K+FD M  ++++TW A+
Sbjct: 81  LTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTAL 140

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY +N    + L     MI  G++P+  +   +L  CSH   ++ G+   Q +     
Sbjct: 141 IVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSM----- 195

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            ++   + P    Y        AC                MI    + GK  +A  L ++
Sbjct: 196 -EEVYGIKPGPEHY--------AC----------------MIDLLGRSGKLMEAKELLNQ 230

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M    ++PD+  + ALL AC   G V+LG +  +++       A P  Y  + +L   AG
Sbjct: 231 M---AVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVP--YVLLSNLYSAAG 285

Query: 350 KLVEAVDLIKKMPFK 364
           K  EA    + M  +
Sbjct: 286 KWEEAAKTRRLMKLR 300


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/611 (39%), Positives = 355/611 (58%), Gaps = 45/611 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+WNS+++G   + G +  A +LFD++P+  VVS+  M++     S  V  A  
Sbjct: 92  MPVRDVVSWNSMISGCV-ECGDMNTAVKLFDEMPERSVVSWTAMVNG-CFRSGKVDQAER 149

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++P+KDTA+WN+M+ G++Q   +  A  LF  MP KN +SW+ MI G  +  +  +A
Sbjct: 150 LFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEA 209

Query: 121 VELFK----------VAPVKSVVAWTA-----------------------------MISG 141
           ++LFK            P   V+   A                             +I+ 
Sbjct: 210 LDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITF 269

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y    ++  + K+FDE   + +  W A+++GY  N   ED L +   M+   I PN S+ 
Sbjct: 270 YANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTF 329

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +S L  CS L +L  GK++H +  K  L  D      L+ MY   G++ DA  +F++I +
Sbjct: 330 ASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFK 389

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           K +V+WN++I G AQHG+G+ A  +F +M     +PD ITF  LL AC+H G ++ G + 
Sbjct: 390 KSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKL 449

Query: 322 FDSMVNDYG-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           F  M +    I  K  HYTCMVD+LGR GKL EA +LI++M  KP   ++  LLSACR+H
Sbjct: 450 FYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMH 509

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
             +D  E AA  +FNL+  ++A  YV L+NIYA+  +W +V+++R+ MK+N ++K PG S
Sbjct: 510 SDVDRGEKAAAAIFNLDSKSSAA-YVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSS 568

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           W+ +    HEF SGD+  P    I+EKL+ L +++K  GY PD   ALH V +E KE++L
Sbjct: 569 WVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEML 626

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
            +HSE+LAIAFGLI    G+ + V KNLRVC DCH   K IS +  REI++RD  RFHHF
Sbjct: 627 WYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHF 686

Query: 561 KDGTCSCGDYW 571
           K+GTCSCGDYW
Sbjct: 687 KNGTCSCGDYW 697



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 123/379 (32%), Positives = 202/379 (53%), Gaps = 5/379 (1%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           ++ +A+E+F+++P P V  Y  M++     S+ +V A + F  +P++D  SWN+MISG V
Sbjct: 50  RIDEAREVFNQVPSPHVSLYTKMITG-YTRSNRLVDALNLFDEMPVRDVVSWNSMISGCV 108

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +  +M  A  LF  MPE++ VSW+AM++G    G++D+A  LF   PVK   AW +M+ G
Sbjct: 109 ECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHG 168

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y++FGKVD A KLF +MP KN+++W  MI G  +N  + + L L + M+   I+  +   
Sbjct: 169 YLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPF 228

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           + V+  C++  +  +G QVH L+ K     +      LI+ Y  C  + D+ K+F E   
Sbjct: 229 TCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVH 288

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           + V  W A++SGY+ + K E AL +F  M    + P+  TF + L +C+  G +D G + 
Sbjct: 289 EQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEM 348

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
               V   G+         +V +   +G + +AV +  K+ FK     + +++  C  H 
Sbjct: 349 HGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHG 406

Query: 382 RLDLAE--FAAMNLFNLNP 398
           R   A   F  M   N  P
Sbjct: 407 RGKWAFVIFGQMIRLNKEP 425


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/619 (39%), Positives = 356/619 (57%), Gaps = 50/619 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M V+   +WN++++GF  Q G + +A  + D++   +V    + +S +L     S+DVV 
Sbjct: 208 MPVRDVGSWNAMISGFC-QNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVG 266

Query: 58  -----------------------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                                              A   F  + ++D  SWN++I+ + Q
Sbjct: 267 GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQ 326

Query: 83  KKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVV 133
             +   A   F  M      P+  +V   A I G +   ++ +AV  F V        +V
Sbjct: 327 NDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIV 386

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-GL 192
              A+++ Y K G +D A  +F+++P++++++WN +I GY +N  A + +    MM  G 
Sbjct: 387 IGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGR 446

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            I PN  +  S+L   SH+ +LQ G ++H  + K+ L  D    T LI MY KCG LEDA
Sbjct: 447 TIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDA 506

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF EI ++  V WNA+IS    HG GEKAL+LF  M+ +G+K D ITFV+LL AC+H+
Sbjct: 507 MSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHS 566

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD     FD+M  +Y I     HY CMVDL GRAG L +A +L+  MP +   +I+GT
Sbjct: 567 GLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGT 626

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL+ACR+H   +L  FA+  L  ++  N  G YV L+NIYA + KW+   ++R   ++  
Sbjct: 627 LLAACRIHGNAELGTFASDRLLEVDSENV-GYYVLLSNIYANVGKWEGAVKVRSLARDRG 685

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PG+S + VG+VV  F +G++ HP+   I+E+L+ L  +MK  GYVPD  F L  V 
Sbjct: 686 LRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVE 745

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           E+ KE++L  HSE+LAI FG+I  P  +PIR+FKNLRVCGDCH ATKYIS I +REIIVR
Sbjct: 746 EDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVR 805

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D+ RFHHFKDG CSCGDYW
Sbjct: 806 DSNRFHHFKDGICSCGDYW 824



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 210/427 (49%), Gaps = 67/427 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCILLNSDD---- 54
           K   +WNS+++ + + RG+ +D+ +   ++      +PD  ++  +L   L  +D     
Sbjct: 112 KNIFSWNSMVSAYVR-RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMH 170

Query: 55  ---------------------------VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87
                                      V  A   F  +P++D  SWN MISGF Q  N+A
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 88  KARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV-------ELFKVAPVKSVVAWT 136
           +A  +   M  +    ++V+ S+M+     C Q +  V        + K      V    
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLP---ICAQSNDVVGGVLVHLYVIKHGLESDVFVSN 287

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+I+ Y KFG++  A+++FD M  ++LV+WN++IA Y +N      L   + M+ +G+RP
Sbjct: 288 ALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP 347

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKL 255
           +  ++ S+      LS  ++G+ VH  V +   L  D      L++MY K G ++ A  +
Sbjct: 348 DLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAV 407

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGL 314
           F ++  +DV++WN +I+GYAQ+G   +A+  ++ M++   + P+  T+V++L A +H G 
Sbjct: 408 FEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 315 VDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQ 366
           +  G++    ++      D  +A      TC++D+ G+ G+L +A+ L  ++P +   P 
Sbjct: 468 LQQGMKIHGRLIKNCLFLDVFVA------TCLIDMYGKCGRLEDAMSLFYEIPQETSVPW 521

Query: 367 PAIFGTL 373
            AI  +L
Sbjct: 522 NAIISSL 528



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 6/250 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARD-----LFLAMPEKNSVSWSAMISGYIECGQ 116
           F+ +  K+  SWN+M+S +V++     + D     L L+    +  ++  ++   +    
Sbjct: 106 FKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD 165

Query: 117 LDKA-VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
            +K    + K+     V    ++I  Y +FG V++A K+F +MP +++ +WNAMI+G+ +
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           N    + L++L  M    ++ +  ++SS+L  C+  + +  G  VH  V K  L  D   
Sbjct: 226 NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFV 285

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              LI+MY K G L+DA ++F  ++ +D+V+WN++I+ Y Q+     AL  F +M   GM
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM 345

Query: 296 KPDSITFVAL 305
           +PD +T V+L
Sbjct: 346 RPDLLTVVSL 355



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 5/243 (2%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           L  +   + VV  T +++ Y   G + L+   F  +  KN+ +WN+M++ YV      D 
Sbjct: 74  LLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDS 133

Query: 183 LKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           +  +  ++ L G+RP+  +   VL  C  L+    G+++H  V K     D      LI 
Sbjct: 134 MDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIH 190

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y + G +E A K+F+++  +DV +WNAMISG+ Q+G   +ALR+ D+MK E +K D++T
Sbjct: 191 LYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVT 250

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++L  C  +  V  G+      V  +G+ +       ++++  + G+L +A  +   M
Sbjct: 251 VSSMLPICAQSNDVVGGV-LVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGM 309

Query: 362 PFK 364
             +
Sbjct: 310 EVR 312



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           +++ + KQ+H L+      +D   LT L+++Y   GDL  +   F  IQRK++ +WN+M+
Sbjct: 62  TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMV 121

Query: 272 SGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 309
           S Y + G+   ++    ++    G++PD  TF  +L AC
Sbjct: 122 SAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC 160


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/608 (40%), Positives = 348/608 (57%), Gaps = 42/608 (6%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V  +V+WNS+LAG+ K +G +++A+ +FD++PQ ++V+ N M+  +L     V+ A+  F
Sbjct: 204 VLDSVSWNSILAGYVK-KGDVEEAKLIFDQMPQRNIVASNSMI-VLLGKMGQVMEAWKLF 261

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------------------NSVS 103
             +  KD  SW+ +ISG+ Q     +A  +F+ M                      + V 
Sbjct: 262 NEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVK 321

Query: 104 WSAMISG--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
              MI G                    Y   G++  A +LF  +     ++W +MISG M
Sbjct: 322 TGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCM 381

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           K G V+ A  LFD MP K++V+W+A+I+GY ++    + L L   M    IRP+ + L S
Sbjct: 382 KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           V+  C+HL++L  GK VH  + K+ L  +    T L+ MY KCG +E+A ++F  ++ K 
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V +WNA+I G A +G  E++L +F +MK+ G+ P+ ITF+ +L AC H GLVD G  +F 
Sbjct: 502 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 561

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           SM+  +GI     HY CMVDLLGRAG L EA  LI+ MP  P  A +G LL AC+ H   
Sbjct: 562 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 621

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           ++ E     L  L P +  G +V L+NI+A+   W+DV  +R  MK+  VVK PG S IE
Sbjct: 622 EMGERVGRKLIELQP-DHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 680

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
              VVHEF +GD+ HP +  +   L E+ KR+K+ GY PD       + EE KE  L  H
Sbjct: 681 ANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRH 740

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SEKLAIAFGL+ +   TPIR+ KNLR+C DCH A K IS    REI+VRD  RFH+FK+G
Sbjct: 741 SEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEG 800

Query: 564 TCSCGDYW 571
            CSC DYW
Sbjct: 801 ACSCMDYW 808



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 165/327 (50%), Gaps = 32/327 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    NT+I+ +    NM  AR LF   P  +SVSW+++++GY++ G +++A  +F   P
Sbjct: 175 DVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMP 234

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            +++VA  +MI    K G+V  A KLF+EM  K++V+W+A+I+GY +N   E+ L +   
Sbjct: 235 QRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 294

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G+R +   + SVL  C+HLS ++ GK +H LV +  +         LI MY   G+
Sbjct: 295 MNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGE 354

Query: 249 LEDACKLFLEIQRKDVVTWNAM-------------------------------ISGYAQH 277
           + DA KLF      D ++WN+M                               ISGYAQH
Sbjct: 355 IMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQH 414

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
               + L LF +M+   ++PD    V+++ AC H   +D G ++  + +   G+      
Sbjct: 415 DCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVIL 473

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            T ++D+  + G +  A+++   M  K
Sbjct: 474 GTTLLDMYMKCGCVENALEVFNGMEEK 500



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 147/328 (44%), Gaps = 49/328 (14%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISG--- 110
           +   F R+   +   WNTM+  ++Q  +  KA  L+  M + N    + ++  ++     
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 153

Query: 111 -YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
             +E G  +    + KV     V     +I+ Y   G +  A KLFDE P  + V+WN++
Sbjct: 154 RLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSI 213

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           +AGYV+    E+                                        +L+F    
Sbjct: 214 LAGYVKKGDVEEA---------------------------------------KLIFDQMP 234

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            ++  A   +I +  K G + +A KLF E+  KD+V+W+A+ISGY Q+G  E+AL +F +
Sbjct: 235 QRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 294

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   GM+ D +  V++L AC H  +V  G +    +V   GI +  +    ++ +   +G
Sbjct: 295 MNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSG 353

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           ++++A  L        Q + + +++S C
Sbjct: 354 EIMDAQKLFNGSHNLDQIS-WNSMISGC 380



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +D + ++FD +   N   WN M+  Y++++ AE  L L ++M+   + P+  +   V
Sbjct: 88  FIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLV 147

Query: 205 LLGCSHLSSLQL-GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +  C+ +  L+  GK++H  V K     D      LI+MY  CG++ DA KLF E    D
Sbjct: 148 VQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLD 206

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            V+WN++++GY + G  E+A  +FD+M    +   +   V L
Sbjct: 207 SVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLL 248



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 6/166 (3%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG--DLEDACKLF 256
           S L + L  C +L   Q  + + Q++  +    DT A + L+          L+ + ++F
Sbjct: 42  SILETHLHNCHNLK--QFNRILSQMIL-TGFISDTFAASRLLKFSTDSPFIGLDYSLQIF 98

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             I+  +   WN M+  Y Q    EKAL L+  M    + PD+ T+  ++ AC    L++
Sbjct: 99  DRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLE 157

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            G +     V   G  +       ++++    G + +A  L  + P
Sbjct: 158 FGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESP 203


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/521 (43%), Positives = 330/521 (63%), Gaps = 14/521 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNS-VSWSAMISGYIEC 114
           FQ++ I D  SWN++I+ + Q  +   A   F+ M      P+  + VS +++++   +C
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 115 GQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
               ++V  F +     ++ VV   A++  Y K G +D A K+F+ +P K++++WN +I 
Sbjct: 434 KN-SRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLIT 492

Query: 172 GYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           GY +N  A + +++ +MM     I PN  +  S+L   +H+ +LQ G ++H  V K+ L 
Sbjct: 493 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLH 552

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            D    T LI +Y KCG L DA  LF ++ ++  VTWNA+IS +  HG  EK L+LF +M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
            DEG+KPD +TFV+LL AC+H+G V+ G   F  ++ +YGI     HY CMVDLLGRAG 
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGY 671

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L  A D IK MP +P  +I+G LL ACR+H  ++L +FA+  LF ++  N  G YV L+N
Sbjct: 672 LEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNV-GYYVLLSN 730

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYA + KW+ V ++R   +E  + K PG+S IEV   V  F +G++ HP+   I+E+L+ 
Sbjct: 731 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRV 790

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L  +MK  GY+PD  F L  V E+ KE +L  HSE+LAIAFG+I  P  +PIR+FKNLRV
Sbjct: 791 LTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRV 850

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH ATK+IS I +REI+VRD+ RFHHFKDG CSCGDYW
Sbjct: 851 CGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 6/261 (2%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMI 108
           N  DV  +   F ++P KD  +WN+MIS +V   +  +A   F  L +  +    +    
Sbjct: 163 NLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 222

Query: 109 SGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                CG L    ++    FK+    +V    ++I  Y +FG   +A  LFD+MP +++ 
Sbjct: 223 PVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 282

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNAMI+G ++N  A   L +L  M   GI+ N  ++ S+L  C  L  +     +H  V
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K  L  D      LI+MY K G+LEDA K F ++   DVV+WN++I+ Y Q+     A 
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 285 RLFDKMKDEGMKPDSITFVAL 305
             F KM+  G +PD +T V+L
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSL 423



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 4/186 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLR 187
           V+S+   T +++ Y   G V L+   FD++P K++  WN+MI+ YV N    + +    +
Sbjct: 148 VQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQ 207

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +++   IRP+  +   VL  C  L     G+++H   FK     +      LI MY + G
Sbjct: 208 LLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFG 264

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
               A  LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+K + +T V++L 
Sbjct: 265 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 308 ACNHAG 313
            C   G
Sbjct: 325 VCPQLG 330



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 38/303 (12%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC--ILLNSDDVVAAFD 60
           VK  ++WN+++ G+A Q G   +A E+           Y +M  C  I+ N    V+   
Sbjct: 481 VKDVISWNTLITGYA-QNGLASEAIEV-----------YKMMEECKEIIPNQGTWVSILP 528

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            +  +           I G V K N+    D+F+A         + +I  Y +CG+L  A
Sbjct: 529 AYAHV---GALQQGMKIHGRVIKTNL--HLDVFVA---------TCLIDVYGKCGRLVDA 574

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVEN 176
           + LF   P +S V W A+IS +   G  +   KLF EM  + +    VT+ ++++    +
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
            + E+G    R+M   GI+P+      ++        L++    +  +   PL  D +  
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMA---YDFIKDMPLQPDASIW 691

Query: 237 TPLISMYCKCGDLE---DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
             L+      G++E    A     E+  K+V  +  + + YA  GK E   ++    ++ 
Sbjct: 692 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 751

Query: 294 GMK 296
           G+K
Sbjct: 752 GLK 754



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 68/342 (19%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVF--------KSPLCKDTTAL---------- 236
           R     L S        SS  LG Q  ++ F        K+P  K   AL          
Sbjct: 92  RRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSI 151

Query: 237 ---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKD 292
              T L+++Y   GD+  +   F +I +KDV  WN+MIS Y  +G   +A+  F + +  
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 293 EGMKPDSITFVALLLACN--------HAGLVDLGIQY----FDSMVNDY------GIAAK 334
             ++PD  TF  +L AC         H     LG Q+      S+++ Y      GIA  
Sbjct: 212 SEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 335 ---------PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL-D 384
                       +  M+  L + G   +A+D++ +M  +     F T++S   V  +L D
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 385 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           ++    ++L+ +        +V   L N+YA     +D  +    M   +VV     SW 
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVV-----SW- 385

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
              +++  +   D    + V+ H        +M+L G+ PDL
Sbjct: 386 --NSIIAAYEQND----DPVTAHGFF----VKMQLNGFQPDL 417


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/511 (43%), Positives = 321/511 (62%), Gaps = 2/511 (0%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F R+  KD  SWN++I G+ +   +  A ++F  MPEK+S SW+ +I G  + G+L+ A 
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAAR 231

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++F   P+++ V+W AMI+GYMK G  + A++LFD+MP ++LVTWN+MI GY  N     
Sbjct: 232 DVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            LKL  +M+   I PN +++   +   S + SL  G+ VH  + KS    D    T LI 
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG ++ A ++F  I +K +  W ++I G   HG  E+ L LFD+M   G+KP +IT
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAIT 411

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+ +L AC+HAG  +   +YF  M  DYGI    +HY C++D+L RAG L EA D I++M
Sbjct: 412 FIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERM 471

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P K    I+ +LLS  R H  + + E+AA +L +L P +  GCYV L+N+YAA   W+ V
Sbjct: 472 PIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAP-DTTGCYVILSNMYAAAGLWEKV 530

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
            ++R  MK+  + K PG S IE    +HEF  GD+ HP+   I+ KL E++K++ +AG++
Sbjct: 531 RQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHI 590

Query: 482 PDLEFALHAVGEE-VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           PD    L  + E+  KE  L  HSE+LAIAFGL+ +  G+PIR+ KNLR+C DCH  TK 
Sbjct: 591 PDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKL 650

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +S I  REII+RD +RFHHFK G+CSC D+W
Sbjct: 651 LSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 43/319 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+WNS++ G+A+  G+++ A E+F+++P+ D  S+ I++   L  S  + AA D
Sbjct: 175 MEDKDVVSWNSLIDGYARC-GEIELALEMFEEMPEKDSFSWTILIDG-LSKSGKLEAARD 232

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+PI+++ SWN MI+G+++  +   A++LF  MPE++ V+W++MI+GY    Q  KA
Sbjct: 233 VFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292

Query: 121 VELFKV------AP----------------------------VKS-----VVAWTAMISG 141
           ++LF+V      +P                            VKS      V  T +I  
Sbjct: 293 LKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEM 352

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G V  A ++F  +P K L  W ++I G   +   E  L+L   M   G++P+A + 
Sbjct: 353 YSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITF 412

Query: 202 SSVLLGCSHLSSLQLGKQVHQLV-FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
             VL  CSH    +   +  +++ +   +         LI + C+ G LE+A      + 
Sbjct: 413 IGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMP 472

Query: 261 RK-DVVTWNAMISGYAQHG 278
            K + V W +++SG  +HG
Sbjct: 473 IKANKVIWTSLLSGSRKHG 491



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 10/219 (4%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           +   +  A  LFD +    LV+WN +I  Y+EN  + D + L   ++     P++ +L  
Sbjct: 61  RINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPC 119

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL GC+ L +LQ GKQ+H LV K     D   L+ L+SMY KCG++E   K+F  ++ KD
Sbjct: 120 VLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKD 179

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WN++I GYA+ G+ E AL +F++M ++    DS ++  L+   + +G ++     FD
Sbjct: 180 VVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFD 235

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            M     ++     +  M++   +AG    A +L  +MP
Sbjct: 236 RMPIRNSVS-----WNAMINGYMKAGDSNTAKELFDQMP 269


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/534 (41%), Positives = 329/534 (61%), Gaps = 39/534 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----------- 122
           N +I+ +V+   +  A+D+F  MP++N VSW+ MIS Y      DKA+E           
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 123 -------------------------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
                                    + K+     V   +A+I  Y ++G+++ A ++FDE
Sbjct: 64  PNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDE 123

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M T +LV W+++IAG+ +NS  ++ L+L + M   G     ++L+SVL  C+ L+ L+LG
Sbjct: 124 MVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELG 183

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +QVH  V K    +D      L+ MYCKCG LEDA  +F+ +  KDV++W+ MI+G AQ+
Sbjct: 184 RQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQN 241

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  ++AL+LF+ MK  G+KP+ +T V +L AC+HAGLV+ G+ YF SM   +GI    +H
Sbjct: 242 GYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREH 301

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CM+DLLGRAG+L EAVDLI +M  +P    +  LL+ACRVH+ +D+A  AA  +  L+
Sbjct: 302 YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLD 361

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P +A G YV L+NIYA  ++W+DVA +R +M    + K PG SWIEV   +H F  GDR 
Sbjct: 362 PQDA-GTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRS 420

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP++  I+ +L +L  ++   GYVPD  F L  +  E  +  L +HSEKLAI FGL+ +P
Sbjct: 421 HPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLP 480

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            G  IR+ KNLR+CGDCH  TK ++ +E+R I++RD  R+HHF+DG CSCGD+W
Sbjct: 481 RGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 52/288 (18%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G+L++A  +FD++   D+V                               
Sbjct: 102 SALIDVYSRWGELENALRVFDEMVTGDLV------------------------------- 130

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG------QLDKAVELF 124
             W+++I+GF Q  +  +A  LF  M     ++    ++  +         +L + V + 
Sbjct: 131 -VWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVH 189

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
            +   + ++   A++  Y K G ++ A  +F  M  K++++W+ MIAG  +N ++++ LK
Sbjct: 190 VLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALK 249

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP------ 238
           L   M  LGI+PN  ++  VL  CSH   ++ G      ++     K+   + P      
Sbjct: 250 LFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG------LYYFHSMKELFGIDPGREHYG 303

Query: 239 -LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKAL 284
            +I +  + G L +A  L  E++   D VTW A+++    H   + A+
Sbjct: 304 CMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAI 351



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 68/132 (51%), Gaps = 8/132 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W+S++AGFA Q     +A  LF ++ +   ++    L+ + L +   +A  +  +++ 
Sbjct: 130 VVWSSIIAGFA-QNSDGDEALRLFKRMKRAGFLAQQTTLTSV-LRACTGLALLELGRQVH 187

Query: 67  I------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           +      +D    N ++  + +  ++  A  +F+ M EK+ +SWS MI+G  + G   +A
Sbjct: 188 VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEA 247

Query: 121 VELFKVAPVKSV 132
           ++LF+   V  +
Sbjct: 248 LKLFESMKVLGI 259


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/639 (40%), Positives = 358/639 (56%), Gaps = 79/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCIL------------------- 49
           N+++  +AK  G L+DA  +FD+I +PD+VS+N I+  C+L                   
Sbjct: 150 NALVDMYAKV-GILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGM 208

Query: 50  ------LNSDDVVAAFDFFQRLPIKDTASWNTMISG------------FVQKKNMAKARD 91
                 L+S     A    + L  +  +S   M  G            + +  +M  AR 
Sbjct: 209 CPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARL 268

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV--------------APVKSVVAWTA 137
           +F  MPE++ ++W+A+ISG+ +  + ++A  LF +                +KS+ A  A
Sbjct: 269 VFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQA 328

Query: 138 -------------------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                                    +I  Y K G V+ A ++F+E P  +LV + +++  
Sbjct: 329 NYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTA 388

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y ++   E+ L+L   M   GI+P++   SS+L  C+ LS+ + GKQVH  + K     D
Sbjct: 389 YAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSD 448

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             A   L++MY KCG +EDA   F  I  + +V+W+AMI G AQHG G++AL+LF +M  
Sbjct: 449 IFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLK 508

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+ P+ IT V++L ACNHAGLV     YF+SM   +GI    +HY CM+DLLGRAGKL 
Sbjct: 509 VGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLE 568

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            A++L+ KMPF+    ++G LL A R+HK +DL E AA  L  L P   +G +V LANIY
Sbjct: 569 AAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP-EKSGTHVLLANIY 627

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A++  WD VAR+R  MK+  V K PG SW+EV   V+ F  GDR H     I+ KL EL 
Sbjct: 628 ASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELS 687

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
             +K AGYVP +E  LH V    KEQLL  HSEKLA+AFGLI  P G PIRV KNLR+C 
Sbjct: 688 DLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICF 747

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K+IS I  REIIVRDT RFHHF++G+CSCG+YW
Sbjct: 748 DCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 174/364 (47%), Gaps = 47/364 (12%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIE 113
           A   F  +P +   SWN + S +V      +A  LF    L+    N  S S+MI+    
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN---V 120

Query: 114 CGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           C  L+ +V+       L K+       +  A++  Y K G ++ A  +FDE+   ++V+W
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NA+IAG V + +    L+LLR M   G+ PN  +LSS L  C+ ++  +LG+Q+H  + K
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             +  D+     LI MY KC  ++DA  +F  +  +D++ WNA+ISG++Q+ + E+A  L
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 287 FDKMKDEGMKPDSITFVALL-----LACN------HAGLVDLGIQY----FDSMVNDYGI 331
           F  M  EG+  +  T   +L     L  N      HA  +  G ++     +S+++ YG 
Sbjct: 301 FPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGK 360

Query: 332 AAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTL 373
               +                +T +V    + G+  EA+ L  +M     KP   +  +L
Sbjct: 361 CGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSL 420

Query: 374 LSAC 377
           L+AC
Sbjct: 421 LNAC 424



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G    A  LFD +P +++V+WNA+ + YV +    + + L   M+  GIRPN  SL
Sbjct: 55  YAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSL 114

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SS++  C+ L     G+++H  + K     D  +   L+ MY K G LEDA  +F EI +
Sbjct: 115 SSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAK 174

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
            D+V+WNA+I+G   H    +AL L  +M   GM P+  T  + L AC    L +LG Q 
Sbjct: 175 PDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQL 234

Query: 322 FDSMVN-DYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMP 362
             S++  D G     D +    ++D+  +   + +A  + K MP
Sbjct: 235 HSSLIKMDMG----SDSFLGVGLIDMYSKCNSMDDARLVFKLMP 274



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           LGI+ N  +  SVL  C+    L LGKQVH +V  +    D      L+ +Y KCG   D
Sbjct: 4   LGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGD 63

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  LF  I  + VV+WNA+ S Y       +A+ LF  M   G++P+  +  +++  C  
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT- 122

Query: 312 AGLVD-LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
            GL D +  +     +   G  +       +VD+  + G L +A  +  ++  KP    +
Sbjct: 123 -GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSW 180

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK- 429
             +++ C +H      E+    L  L   N +G    +  + +A+K    +A   L  + 
Sbjct: 181 NAIIAGCVLH------EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQL 234

Query: 430 ENNVVKM 436
            ++++KM
Sbjct: 235 HSSLIKM 241


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/613 (40%), Positives = 341/613 (55%), Gaps = 47/613 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC------------ 47
           +  ++WN+++ G A Q G   +A  +F K+ Q    PD  +Y  +L+             
Sbjct: 298 RDVISWNAMIGGLA-QNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 48  -------ILLNSD-DVVAAFD--------------FFQRLPIKDTASWNTMISGFVQKKN 85
                  + L SD  V +AF                F +L +++  +WN MI G  Q+K 
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 86  MAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV---AWTAM 138
             +A  LFL M  +    ++ ++  ++S  +    L+   E+   A    +V      A+
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNAL 476

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y K G    A+++FD+M  +N+ TW  MI+G  ++    +   L   M+  GI P+A
Sbjct: 477 VHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDA 536

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           ++  S+L  C+   +L+  K+VH     + L  D      L+ MY KCG ++DA ++F +
Sbjct: 537 TTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDD 596

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  +DV +W  MI G AQHG+G  AL LF KMK EG KP+  +FVA+L AC+HAGLVD G
Sbjct: 597 MLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEG 656

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            + F S+  DYGI    +HYTCMVDLLGRAG+L EA   I  MP +P  A +G LL AC 
Sbjct: 657 RRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACV 716

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
            +  L++AEFAA     L P +A+  YV L+NIYAA   W+    +R  M+   + K PG
Sbjct: 717 TYGNLEMAEFAAKERLKLKPKSAS-TYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPG 775

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SWIEV   +H F  GD  HPE   I+ KLK+L KR+K  GYVPD    L    +E KEQ
Sbjct: 776 RSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQ 835

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
            L  HSEKLAI +GL+  P   PIRV+KNLRVC DCH ATK+IS +  REI+ RD  RFH
Sbjct: 836 ALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFH 895

Query: 559 HFKDGTCSCGDYW 571
           HFKDG CSCGDYW
Sbjct: 896 HFKDGVCSCGDYW 908



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/580 (23%), Positives = 228/580 (39%), Gaps = 139/580 (23%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI------------------------------LL 50
           G + DAQ +FDK+ + +V+S+ +M+  +                              +L
Sbjct: 79  GSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSIL 138

Query: 51  NSDDVVAAFDFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102
           N++    A ++ + +           D    N ++  + +  ++  AR +F  M E++  
Sbjct: 139 NANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIF 198

Query: 103 SWSAMISGYIECGQLDKAVELF-------------------------------------- 124
           SW+ MI G  + G+  +A  LF                                      
Sbjct: 199 SWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK 258

Query: 125 ---KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
              K   +  +    A+I  Y K G +D A  +FD M  +++++WNAMI G  +N    +
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHE 318

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
              +   M   G  P++++  S+L       + +  K+VH+   +  L  D    +  + 
Sbjct: 319 AFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVH 378

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY +CG ++DA  +F ++  ++V TWNAMI G AQ   G +AL LF +M+ EG  PD+ T
Sbjct: 379 MYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATT 438

Query: 302 FVALLLA----------------CNHAGLVDLGI------------------QYFDSMVN 327
           FV +L A                   AGLVDL +                  Q FD MV 
Sbjct: 439 FVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVE 498

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLD 384
                     +T M+  L + G   EA  L  +M      P    + ++LSAC     L+
Sbjct: 499 R-----NVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-IE 443
             +    +  N    +       L ++YA     DD  R+   M E +V     YSW + 
Sbjct: 554 WVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDV-----YSWTVM 608

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +G +    R  D +            +L  +MKL G+ P+
Sbjct: 609 IGGLAQHGRGLDAL------------DLFVKMKLEGFKPN 636



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 180/409 (44%), Gaps = 75/409 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N+++  +AK  G + DA+ +FD +   DV+S+N M+  +  N      AF  F ++    
Sbjct: 273 NALIHMYAKC-GSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCG-HEAFTIFLKMQQEG 330

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAV 121
            + D+ ++ ++++  V        +++     E   VS     SA +  YI CG +D A 
Sbjct: 331 FVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQ 390

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            +F    V++V  W                               NAMI G  +     +
Sbjct: 391 LIFDKLAVRNVTTW-------------------------------NAMIGGVAQQKCGRE 419

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L L   M   G  P+A++  ++L       +L+  K+VH     + L  D      L+ 
Sbjct: 420 ALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLV-DLRVGNALVH 478

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG+   A ++F ++  ++V TW  MISG AQHG G +A  LF +M  EG+ PD+ T
Sbjct: 479 MYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATT 538

Query: 302 FVALLLACN-----------HAGLVDLG----IQYFDSMVNDYGIAAKPD---------- 336
           +V++L AC            H+  V+ G    ++  +++V+ Y      D          
Sbjct: 539 YVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDML 598

Query: 337 -----HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
                 +T M+  L + G+ ++A+DL  KM    FKP    F  +LSAC
Sbjct: 599 ERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSAC 647



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 103/186 (55%), Gaps = 1/186 (0%)

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI GY E  +AED +K+   M   G +PN  +  S+L  C    SL+ GK++H  + +S 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              D    T L++MY KCG ++DA  +F ++  ++V++W  MI G A +G+G++A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M+ EG  P+S T+V++L A   AG ++   +     VN  G+A        +V +  ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKS 179

Query: 349 GKLVEA 354
           G + +A
Sbjct: 180 GSIDDA 185



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 94/173 (54%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           TA+++ Y+K G +D A+ +FD+M  +N+++W  MI G       ++       M   G  
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN+ +  S+L   +   +L+  K+VH     + L  D      L+ MY K G ++DA  +
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           F  +  +D+ +W  MI G AQHG+G++A  LF +M+  G  P+  T++++L A
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 348/591 (58%), Gaps = 33/591 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 304 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFEAAFELFKNMRKEN 361

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA 120
           +P+ D  +W  +I+G+ Q+    +A +LF  M       N V+  +++S     G   + 
Sbjct: 362 IPL-DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 420

Query: 121 VELFKVA--------------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLV 164
            E+   +                + ++ + A+I  Y K      A  +FD++P   +N+V
Sbjct: 421 TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 480

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           TW  MI G+ +   + D LKL   MI    G+ PNA ++S +L+ C+HL+++++GKQ+H 
Sbjct: 481 TWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA 540

Query: 223 LVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
            V +    + +       LI MY KCGD++ A  +F  + +K  ++W +M++GY  HG+G
Sbjct: 541 YVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRG 600

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + +HY C
Sbjct: 601 SEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAC 660

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
            +DLL R+G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  +N  N
Sbjct: 661 AIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEN 720

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GDR HP 
Sbjct: 721 D-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL 779

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+    G 
Sbjct: 780 SPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGC 839

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 840 PIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 192/457 (42%), Gaps = 112/457 (24%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------------------------ 94
           FD   +  I D  SWN+++S  V+  N   A DLF                         
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 95  -------AMPEKNSVS--------------WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  A+P+   V                +A+I  Y +CG ++ AV++F +   K VV
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 332

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLRMM 189
           +W AM++GY + G  + A +LF  M  +N+    VTW A+IAGY +   + + L L R M
Sbjct: 333 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPL 239
           I  G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      L
Sbjct: 393 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 240 ISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GM 295
           I MY KC   + A  +F  + ++ ++VVTW  MI G+AQ+G    AL+LF +M  E  G+
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 296 KPDSITFVALLLACNH-------------------------------------AGLVDLG 318
            P++ T   +L+AC H                                      G VD  
Sbjct: 513 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLS 375
              FDSM     I+     +T M+   G  G+  EA+D+  KM    F P    F  +L 
Sbjct: 573 RHVFDSMSQKSAIS-----WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLY 627

Query: 376 ACRVHKRLD--LAEFAAMNL-FNLNP-ANAAGCYVQL 408
           AC     +D  L+ F +M+  + L P A    C + L
Sbjct: 628 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 664



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
            A+++ Y + G ++ A  +FDE+  +   ++++WN++++ +V++S A   L L   M  +
Sbjct: 194 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 253

Query: 193 ------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
                   R +  S+ ++L  C  L ++   K+VH    ++    D      LI  Y KC
Sbjct: 254 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC 313

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A K+F  ++ KDVV+WNAM++GY+Q G  E A  LF  M+ E +  D +T+ A++
Sbjct: 314 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI 373

Query: 307 LACNHAGLVDLGIQYFDSMV 326
              +  G     +  F  M+
Sbjct: 374 AGYSQRGCSHEALNLFRQMI 393



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +++ Y+  G  D A  + + +     V WN +I  +++    +  + +   M+  G R
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L  VL  C  L S + G   H L+  +    +      L++MY +CG LE+A  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 256 FLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSITFVALL 306
           F EI ++   DV++WN+++S + +      AL LF KM      K    + D I+ V +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 364
            AC     V    +   + + +      PD +    ++D   + G +  AV +   M FK
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRN---GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 333/577 (57%), Gaps = 48/577 (8%)

Query: 42  NIMLSCILLNSDDVVAAFD--------FFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           N  LS + L+    V AF+         FQ L   +   WNT +  F +  + A A  LF
Sbjct: 42  NSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLF 101

Query: 94  LAM------PEKNSVSW-------------SAMISGYIE--------------------C 114
             +      P+  + S+               ++ GY+E                    C
Sbjct: 102 YRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALC 161

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G++  A ++F   P + V+ W  MI+  +K G  + A KLF EMP +N+ +W +MI GY 
Sbjct: 162 GEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYA 221

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +   +++ + L   M   G+ PN  ++ +VL+ C+ + +L LG+++H    +S   K+  
Sbjct: 222 QCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIR 281

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               LI MY KCG LEDAC++F  ++ + VV+W+AMI+G A HG+ E AL LF+KM + G
Sbjct: 282 VCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTG 341

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +KP+++TF+ +L AC+H G+V+ G +YF SM  DYGI  + +HY CMVDL  RAG L EA
Sbjct: 342 VKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEA 401

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
            + I  MP  P   ++G LL  C+VHK + LAE A  +L  L+P N  G YV L+NIYA 
Sbjct: 402 HEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLN-DGYYVVLSNIYAE 460

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
             +W+DVAR+R  M++  V K PG+S I V  VV+ F +GD  HP+   I +  ++L +R
Sbjct: 461 AGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQR 520

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           MKL GYVP+    L  + E+ KE+ L  HSEKLA+ FGLIK   GT IR+ KNLRVC DC
Sbjct: 521 MKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDC 580

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H A K IS +  REI+VRD  RFH FK+G+CSCGDYW
Sbjct: 581 HAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/569 (41%), Positives = 342/569 (60%), Gaps = 30/569 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V+WN++LAG+A  RG  ++A EL  ++     +PD++++N +++       D  AA +FF
Sbjct: 430 VSWNAMLAGYA-LRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG-FTQYGDGKAALEFF 487

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           QR+         T ISG +      + R+L L             I GY+    L   +E
Sbjct: 488 QRMHSMGMDPNTTTISGALAA--CGQVRNLKLGKE----------IHGYV----LRNHIE 531

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           L       S    +A+IS Y     +++A  +F E+ T+++V WN++I+   ++  + + 
Sbjct: 532 L-------STGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L LLR M    +  N  ++ S L  CS L++L+ GK++HQ + +  L      L  LI M
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y +CG ++ + ++F  + ++D+V+WN MIS Y  HG G  A+ LF + +  G+KP+ ITF
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             LL AC+H+GL++ G +YF  M  +Y +    + Y CMVDLL RAG+  E ++ I+KMP
Sbjct: 705 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 764

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F+P  A++G+LL ACR+H   DLAE+AA  LF L P  ++G YV +ANIY+A  +W+D A
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAA 823

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           +IR  MKE  V K PG SWIEV   +H F  GD  HP +  I  K++ L   +K  GYVP
Sbjct: 824 KIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVP 883

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D  F L  V E+ KE  L  HSEK+A+AFGLI    GTP+R+ KNLRVCGDCH ATK+IS
Sbjct: 884 DTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFIS 943

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +EKR+II+RD  RFHHF DG CSCGDYW
Sbjct: 944 KVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 209/422 (49%), Gaps = 53/422 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLSCILLNSDDVVAAFDF 61
           V WN++++G+A Q G+ ++A + F ++      +P+VVS+  +++    N  D   A   
Sbjct: 292 VTWNAIISGYA-QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYD-FEALSV 349

Query: 62  FQRLPIK----DTASWNTMISGFVQKKNMAKARDLF---LAMPEKNS--VSWSAMISGYI 112
           F+++ ++    ++ +  + +S       +   R++    + + E +S  +  ++++  Y 
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNA 168
           +C  ++ A   F +     +V+W AM++GY   G  + A +L  EM  +    +++TWN 
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           ++ G+ +    +  L+  + M  +G+ PN +++S  L  C  + +L+LGK++H  V ++ 
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           +   T   + LISMY  C  LE AC +F E+  +DVV WN++IS  AQ G+   AL L  
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 589

Query: 289 KMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ----YFDSMVNDYGIAA 333
           +M    ++ +++T V+ L AC+           H  ++  G+       +S+++ YG   
Sbjct: 590 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG 649

Query: 334 K-----------PDH----YTCMVDLLGRAGKLVEAVDLIKK---MPFKPQPAIFGTLLS 375
                       P      +  M+ + G  G  ++AV+L ++   M  KP    F  LLS
Sbjct: 650 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 709

Query: 376 AC 377
           AC
Sbjct: 710 AC 711



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 178/355 (50%), Gaps = 48/355 (13%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF----------DFFQRLP 66
           Q G ++DA+ +FDK+ + +V S+  ++   C L + ++ +  F          D F    
Sbjct: 136 QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 67  I-------------KDTASW--------NTMISG-----FVQKKNMAKARDLFLAMPEKN 100
           +             KD   +        N+ + G     F++   M  AR  F  +  K+
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255

Query: 101 SVSWSAMISGYIECGQLDKAVELF---KVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFD 156
              W+ M+SGY   G+  KA++     K++ VK   V W A+ISGY + G+ + A K F 
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFL 315

Query: 157 EMP-----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
           EM        N+V+W A+IAG  +N +  + L + R M+  G++PN+ +++S +  C++L
Sbjct: 316 EMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNL 375

Query: 212 SSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           S L+ G+++H    K   L  D      L+  Y KC  +E A + F  I++ D+V+WNAM
Sbjct: 376 SLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAM 435

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           ++GYA  G  E+A+ L  +MK +G++PD IT+  L+      G     +++F  M
Sbjct: 436 LAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 11/243 (4%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y + G V+ A ++FD+M  +N+ +W A++  Y      E+ +KL  +M+  G+RP+    
Sbjct: 134 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 193

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             V   CS L + ++GK V+  +       ++     ++ M+ KCG ++ A + F EI+ 
Sbjct: 194 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 253

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           KDV  WN M+SGY   G+ +KAL+    MK  G+KPD +T+ A++     +G  +   +Y
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKY 313

Query: 322 FDSM--VNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLL 374
           F  M  + D+    KP+   +T ++    + G   EA+ + +KM     KP      + +
Sbjct: 314 FLEMGGLKDF----KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 375 SAC 377
           SAC
Sbjct: 370 SAC 372



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 202 SSVLLGCSHLSSLQLGKQVH-QLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +S+L  C  L +L+LG QVH QLV     +C+     + L+ +YC+ G +EDA ++F ++
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLG--SRLLEVYCQTGCVEDARRMFDKM 150

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             ++V +W A++  Y   G  E+ ++LF  M +EG++PD   F  +  AC+      +G 
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 210

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             +D M++  G          ++D+  + G++  A    +++ FK
Sbjct: 211 DVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 348/591 (58%), Gaps = 33/591 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 311 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFEAAFELFKNMRKEN 368

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA 120
           +P+ D  +W  +I+G+ Q+    +A +LF  M       N V+  +++S     G   + 
Sbjct: 369 IPL-DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 427

Query: 121 VELFKVA--------------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLV 164
            E+   +                + ++ + A+I  Y K      A  +FD++P   +N+V
Sbjct: 428 TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 487

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           TW  MI G+ +   + D LKL   MI    G+ PNA ++S +L+ C+HL+++++GKQ+H 
Sbjct: 488 TWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA 547

Query: 223 LVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
            V +    + +       LI MY KCGD++ A  +F  + +K  ++W +M++GY  HG+G
Sbjct: 548 YVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRG 607

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + +HY C
Sbjct: 608 SEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAC 667

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
            +DLL R+G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  +N  N
Sbjct: 668 AIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEN 727

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GDR HP 
Sbjct: 728 D-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL 786

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+    G 
Sbjct: 787 SPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGC 846

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 847 PIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 192/457 (42%), Gaps = 112/457 (24%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------------------------ 94
           FD   +  I D  SWN+++S  V+  N   A DLF                         
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 95  -------AMPEKNSVS--------------WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  A+P+   V                +A+I  Y +CG ++ AV++F +   K VV
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 339

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLRMM 189
           +W AM++GY + G  + A +LF  M  +N+    VTW A+IAGY +   + + L L R M
Sbjct: 340 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPL 239
           I  G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      L
Sbjct: 400 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 240 ISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GM 295
           I MY KC   + A  +F  + ++ ++VVTW  MI G+AQ+G    AL+LF +M  E  G+
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 296 KPDSITFVALLLACNH-------------------------------------AGLVDLG 318
            P++ T   +L+AC H                                      G VD  
Sbjct: 520 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLS 375
              FDSM     I+     +T M+   G  G+  EA+D+  KM    F P    F  +L 
Sbjct: 580 RHVFDSMSQKSAIS-----WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLY 634

Query: 376 ACRVHKRLD--LAEFAAMNL-FNLNP-ANAAGCYVQL 408
           AC     +D  L+ F +M+  + L P A    C + L
Sbjct: 635 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 671



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
            A+++ Y + G ++ A  +FDE+  +   ++++WN++++ +V++S A   L L   M  +
Sbjct: 201 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 260

Query: 193 ------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
                   R +  S+ ++L  C  L ++   K+VH    ++    D      LI  Y KC
Sbjct: 261 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC 320

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A K+F  ++ KDVV+WNAM++GY+Q G  E A  LF  M+ E +  D +T+ A++
Sbjct: 321 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI 380

Query: 307 LACNHAGLVDLGIQYFDSMV 326
              +  G     +  F  M+
Sbjct: 381 AGYSQRGCSHEALNLFRQMI 400



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +++ Y+  G  D A  + + +     V WN +I  +++    +  + +   M+  G R
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L  VL  C  L S + G   H L+  +    +      L++MY +CG LE+A  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 256 FLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSITFVALL 306
           F EI ++   DV++WN+++S + +      AL LF KM      K    + D I+ V +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 364
            AC     V    +   + + +      PD +    ++D   + G +  AV +   M FK
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRN---GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 354/605 (58%), Gaps = 45/605 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K+  +  S+L G A+  G++ DA+ LFD+I +P+VVS+N M++  + N + V  A D F
Sbjct: 318 LKSVPSRTSMLTGLARY-GRIDDAKILFDQIHEPNVVSWNAMITGYMQN-EMVDEAEDLF 375

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------------------- 99
            R+P ++T SW  MI+G+ +     +A     A+  K                       
Sbjct: 376 NRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALE 435

Query: 100 ----------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
                           NS   +A+I+ Y +   +    ++F    VK  V++ + +S  +
Sbjct: 436 TGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALV 495

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           +    D A  +F+ MP+ ++V+W  +I+   +     + +++ R M+     PN   L+ 
Sbjct: 496 QNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILT- 554

Query: 204 VLLGCS-HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           +LLG S +L + QLG+Q+H +  K  +         L+SMY KC    D+ K+F  ++ +
Sbjct: 555 ILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEER 613

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D+ TWN +I+GYAQHG G +A+R++  M   G+ P+ +TFV LL AC+H+GLVD G Q+F
Sbjct: 614 DIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFF 673

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            SM +DYG+    +HY CMVDLLGRAG +  A   I  MP +P   I+  LL AC++HK 
Sbjct: 674 KSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKN 733

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           +++   AA  LF++ P+NA G YV L+NIY++   WD+VA++R  MKE  V K PG SW+
Sbjct: 734 VEIGRRAAEKLFSIEPSNA-GNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWM 792

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           ++   +H F +GD  H ++ +I+  L EL   +K  GYVPD +F LH + EE KE  LL+
Sbjct: 793 QIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLY 852

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSEKLA+A+GL+  P G PI++ KNLR+CGDCH   K++S++ KREI VRD  RFHHF++
Sbjct: 853 HSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRN 912

Query: 563 GTCSC 567
           G+CSC
Sbjct: 913 GSCSC 917



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 169/317 (53%), Gaps = 8/317 (2%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DVV    +L+    + + + +A  FF+ +  ++  +W+T+I+   Q   +  A  ++ 
Sbjct: 255 ERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQ 314

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
             P K+  S ++M++G    G++D A  LF      +VV+W AMI+GYM+   VD AE L
Sbjct: 315 RDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDL 374

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F+ MP +N ++W  MIAGY  N  +E  L  L+ +   G+ P+ SSL+S    CS++ +L
Sbjct: 375 FNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEAL 434

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GKQVH L  K+    ++     LI++Y K   +    ++F  +  KD V++N+ +S  
Sbjct: 435 ETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSAL 494

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            Q+   ++A  +F+ M      PD +++  ++ AC  A   +  ++ F SM+++  +   
Sbjct: 495 VQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNP 550

Query: 335 PDHYTCMVDLLGRAGKL 351
           P     +  LLG +G L
Sbjct: 551 P----ILTILLGLSGNL 563



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 211/468 (45%), Gaps = 60/468 (12%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA 71
           +L+G+A+  G+++DA+ +FD +   + V++N M++C + N  D+  A   F  +P +D +
Sbjct: 101 LLSGYARA-GRVRDARRVFDGMGVRNTVAWNAMVTCYVQNG-DITLARKLFDAMPSRDVS 158

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------- 124
           SWNTM++G+   + M +AR+LF  MPE+N VSW+ MISGY+   Q  +A ++F       
Sbjct: 159 SWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEG 218

Query: 125 --------------------------------KVAPVKSVVAWTAMISGYMK-FGKVDLA 151
                                           K    + VV  TA+++GY K    +D A
Sbjct: 219 MTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSA 278

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K F+ M  +N  TW+ +IA   +    +D   + +         +  S +S+L G +  
Sbjct: 279 VKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQR----DPLKSVPSRTSMLTGLARY 334

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
             +   K    ++F      +  +   +I+ Y +   +++A  LF  +  ++ ++W  MI
Sbjct: 335 GRIDDAK----ILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMI 390

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           +GYA++G+ E+AL     +  +GM P   +  +   AC++   ++ G Q     V     
Sbjct: 391 AGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVK---A 447

Query: 332 AAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
             + + Y C  ++ L G+   +     +  +M  K   + + + +SA   +   D     
Sbjct: 448 GCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS-YNSFMSALVQNNLFD----E 502

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           A ++FN  P+     +  + +  A   + ++   I  SM     +  P
Sbjct: 503 ARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNP 550



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 15/347 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L +A+E+FD +P  D++++N M+     N+    A       +   +  +   ++SG+
Sbjct: 47  GRLHEAREVFDSMPFRDIIAWNSMIFA-YCNNGMPDAGRSLADAISGGNLRTGTILLSGY 105

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   +  AR +F  M  +N+V+W+AM++ Y++ G +  A +LF   P + V +W  M++
Sbjct: 106 ARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLT 165

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           GY     ++ A  LF+ MP +N V+W  MI+GYV          + R M+  G+ P   +
Sbjct: 166 GYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPN 225

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKLFLEI 259
           L SVL    HL    + + +H LV K+   +D    T +++ Y K    L+ A K F  +
Sbjct: 226 LVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGM 285

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLF--DKMKDEGMKPDSITFVALLLACNHAGLVDL 317
             ++  TW+ +I+  +Q G+ + A  ++  D +K    +   +T +A        G +D 
Sbjct: 286 AARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLA------RYGRIDD 339

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               FD +     ++     +  M+    +   + EA DL  +MPF+
Sbjct: 340 AKILFDQIHEPNVVS-----WNAMITGYMQNEMVDEAEDLFNRMPFR 381



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 154/359 (42%), Gaps = 89/359 (24%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T++ +  I    +   + +AR++F +MP ++ ++W++MI  Y   G  D    L      
Sbjct: 33  TSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISG 92

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            ++   T ++SGY + G+V  A ++FD M  +N V WNAM+  YV+N             
Sbjct: 93  GNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQN------------- 139

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                                   + L ++    +F +   +D ++   +++ YC    +
Sbjct: 140 ----------------------GDITLARK----LFDAMPSRDVSSWNTMLTGYCHSQLM 173

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYA---QHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           E+A  LF  +  ++ V+W  MISGY    QHG   +A  +F  M  EGM P+    V++L
Sbjct: 174 EEARNLFERMPERNGVSWTVMISGYVLIEQHG---RAWDMFRTMLCEGMTPEQPNLVSVL 230

Query: 307 LACNHAG------------------------------------LVDLGIQYFDSMVNDYG 330
            A  H G                                    ++D  +++F+      G
Sbjct: 231 SAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFE------G 284

Query: 331 IAAKPDH-YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           +AA+ ++ ++ ++  L +AG++ +A  + ++ P K  P+    L    R + R+D A+ 
Sbjct: 285 MAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLAR-YGRIDDAKI 342



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 39/267 (14%)

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
           P    T+A +  I    + G L +A ++F  +  +D++ WN+MI  Y  +G  +    L 
Sbjct: 28  PRSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLA 87

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           D +    ++  +I    LL     AG V    + FD M     +A     +  MV    +
Sbjct: 88  DAISGGNLRTGTI----LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQ 138

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
            G +  A  L   MP +   +    L   C  H +L + E  A NLF   P      +  
Sbjct: 139 NGDITLARKLFDAMPSRDVSSWNTMLTGYC--HSQL-MEE--ARNLFERMPERNGVSWTV 193

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           + + Y                    +++  G +W    T++ E  + ++  P LVS+   
Sbjct: 194 MISGYV-------------------LIEQHGRAWDMFRTMLCEGMTPEQ--PNLVSVLSA 232

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEE 494
           ++ L K     G +  +   +H  G E
Sbjct: 233 VRHLGK----PGILESIHVLVHKTGFE 255


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/639 (38%), Positives = 350/639 (54%), Gaps = 82/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N +L  +AK  GKL+DAQ LFDK+ + D+ S+N +LS    +    ++ A FD   R+P 
Sbjct: 62  NQLLHLYAK-FGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFD---RMPF 117

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------------- 99
           +D+ S+NT I+GF       ++ +LF  M  +                            
Sbjct: 118 RDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQI 177

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK---- 144
                      N   W+A+   Y +CG++++A  LF     K++V+W  MISGY K    
Sbjct: 178 HGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQP 237

Query: 145 -------------------------------FGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                                           G+VD A ++F E   K++V W AM+ GY
Sbjct: 238 EKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N   ED L L   M+   I P++ +LSSV+  C+ L+SL  G+ VH     + L  + 
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + LI MY KCG ++DA  +F  +  ++VV+WNAMI G AQ+G  + AL LF+ M  +
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
             KPD++TF+ +L AC H   ++ G +YFDS+ N +G+    DHY CMV+LLGR G++ +
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           AV LIK M   P   I+ TLLS C     +  AE AA +LF L+P  A   Y+ L+N+YA
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVP-YIMLSNMYA 536

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +M +W DVA +R  MK  NV K  G+SWIE+   VH F S DR HPE   I+EKL  L  
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIG 596

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCG 532
           +++  G+ P+    LH VGE+ K + + FHSEKLA+AFGLIK P G +PIR+ KN+R+C 
Sbjct: 597 KLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICN 656

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K+ S I  R+II+RD+ RFHHF  G CSC D W
Sbjct: 657 DCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/609 (39%), Positives = 352/609 (57%), Gaps = 44/609 (7%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--AFDFFQ 63
           TV WN++LAG +        A+ + D   +PD  +   +L      +D  +      F +
Sbjct: 180 TVLWNTLLAGLSGSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAE 239

Query: 64  RLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           +  + +     T +IS + +  ++  AR LF  M + + V+++A+ISGY   G +  +V 
Sbjct: 240 KCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVN 299

Query: 123 LFK----------------VAPVKSVVAW-----------------------TAMISGYM 143
           LF                 + PV S                           TA+ + + 
Sbjct: 300 LFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHC 359

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           +   ++ A K FD MP K + +WNAMI+GY +N   E  + L   M+ L +RPN  ++SS
Sbjct: 360 RLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISS 419

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
            L  C+ L +L LGK +H+++ +  L  +   +T LI MY KCG + +A ++F  +  K+
Sbjct: 420 TLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKN 479

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WNAMI+GY  HG+G +AL+L+  M D  + P S TF+++L AC+H GLV+ G + F 
Sbjct: 480 VVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFR 539

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKR 382
           SM +DY I    +H TCMVDLLGRAG+L EA +LI + P     P ++G LL AC VHK 
Sbjct: 540 SMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKD 599

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
            DLA+ A+  LF L+P N +G YV L+N++ + K++ + A +R   K   +VK PGY+ I
Sbjct: 600 SDLAKLASQKLFELDPEN-SGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLI 658

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           E+G   H F +GDR HP+  +I+  L++L  +M  AGY P+ E AL+ V EE KE ++  
Sbjct: 659 EIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKV 718

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSEKLAIAFGL+    GT IR+ KNLRVC DCH ATK+IS + +R I+VRD +RFHHF+D
Sbjct: 719 HSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRD 778

Query: 563 GTCSCGDYW 571
           G CSCGDYW
Sbjct: 779 GVCSCGDYW 787



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 168/354 (47%), Gaps = 34/354 (9%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S LA       ++  A+++FD +P PD V +N +L+   L+  + V +F           
Sbjct: 153 SALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAG--LSGSEAVESF----------- 199

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVAPV 129
                M+     + +      +  A  E   V+    +  + E CG  +    L      
Sbjct: 200 ---ARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVL------ 250

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
                 T +IS Y K G V+ A  LFD M   +LV +NA+I+GY  N      + L   +
Sbjct: 251 ------TGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTEL 304

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           + LG+ PN+S+L +++   S      L + +H  V KS    ++   T + +++C+  D+
Sbjct: 305 MTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDM 364

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E A K F  +  K + +WNAMISGYAQ+G  E A+ LF++M    ++P+ IT  + L AC
Sbjct: 365 ESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSAC 424

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 361
              G + LG ++   ++ +  +  +P+ Y  T ++D+  + G + EA  +   M
Sbjct: 425 AQLGALSLG-KWLHRIITEEDL--EPNVYVMTALIDMYAKCGSISEARRIFNTM 475



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 36/333 (10%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +A+   Y    +VD A K+FD +P+ + V WN ++AG    S +E      RM+    +R
Sbjct: 153 SALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL---SGSEAVESFARMVCDGSVR 209

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+A++L+SVL   + ++ + +G+ VH    K  L +    LT LIS+Y KCGD+E A  L
Sbjct: 210 PDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCL 269

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA----------- 304
           F  +++ D+V +NA+ISGY+ +G    ++ LF ++   G+ P+S T VA           
Sbjct: 270 FDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHD 329

Query: 305 LLLACNHAGLVDLG----------IQYFDSMVNDYGIAAKP---------DHYTCMVDLL 345
           LL  C H  ++  G          I      +ND   A K          + +  M+   
Sbjct: 330 LLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGY 389

Query: 346 GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            + G    AV L ++M     +P P    + LSAC     L L ++    +   +     
Sbjct: 390 AQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNV 449

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
                L ++YA      +  RI  +M   NVV 
Sbjct: 450 YVMTALIDMYAKCGSISEARRIFNTMDNKNVVS 482



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 16/136 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDD 54
           M  KT  +WN++++G+A Q G  + A  LF+++      P P  +S + + +C  L +  
Sbjct: 374 MPEKTMESWNAMISGYA-QNGLTEMAVALFEQMVKLNVRPNPITIS-STLSACAQLGA-- 429

Query: 55  VVAAFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            ++   +  R+  ++    N      +I  + +  ++++AR +F  M  KN VSW+AMI+
Sbjct: 430 -LSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIA 488

Query: 110 GYIECGQLDKAVELFK 125
           GY   GQ  +A++L+K
Sbjct: 489 GYGLHGQGAEALKLYK 504



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 11/165 (6%)

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           DT   + L  +Y     ++ A K+F  +   D V WN +++G +    G +A+  F +M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 292 DEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
            +G ++PD+ T  ++L A      V +G +   S     G+A      T ++ L  + G 
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMG-RCVHSFAEKCGLAEHEHVLTGLISLYSKCGD 262

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            VE+   +  M  KP    +  L+S   V+  +     +++NLF 
Sbjct: 263 -VESARCLFDMMEKPDLVAYNALISGYSVNGMVG----SSVNLFT 302


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 360/624 (57%), Gaps = 58/624 (9%)

Query: 4   KTTV-NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAF 59
           KT V +WNSV+A  A+  G   +A   F  + +  +        C + +     D+ +  
Sbjct: 114 KTNVFSWNSVIAELARS-GDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGR 172

Query: 60  DFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              Q+  I     D    + ++  + +   +  AR LF  +  +N VSW++MI+GY++  
Sbjct: 173 QAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQND 232

Query: 116 QLDKAVELFK----------------VAPVKSVVAWTA---------------------- 137
              +A+ LFK                V P+  V   +A                      
Sbjct: 233 DAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGF 292

Query: 138 ---------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                    ++  Y K G++ ++ ++FD M  +++++WN++IA Y +N  + + +++   
Sbjct: 293 EGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHR 352

Query: 189 MIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           M+  G I  NA +LS+VLL C+H  S +LGK +H  V K  L  +    T +I MYCKCG
Sbjct: 353 MVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCG 412

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +E A K F  ++ K+V +W+AM++GY  HG  ++AL +F +M   G+KP+ ITFV++L 
Sbjct: 413 KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLA 472

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL++ G  +F +M +++ +    +HY CMVDLLGRAG L EA DLIK M  +P  
Sbjct: 473 ACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDF 532

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LL ACR+HK +DL E +A  LF L+P N  G YV L+NIYA   +W+DV R+R+ 
Sbjct: 533 VVWGALLGACRMHKNVDLGEISARKLFELDPKN-CGYYVLLSNIYADAGRWEDVERMRIL 591

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MK + +VK PG+S +++   VH F  GDR HP+   I+E L++L  +++  GYVPD+   
Sbjct: 592 MKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSV 651

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH VG E KE +L  HSEKLA+AFG++    GT I + KNLRVCGDCH A K+IS I  R
Sbjct: 652 LHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDR 711

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EI+VRD+ RFHHF+DG CSCGDYW
Sbjct: 712 EIVVRDSKRFHHFRDGLCSCGDYW 735



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 154 LFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           LF++   K N+ +WN++IA    +  + + L+    M  L ++PN S+    +  CS L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
            L  G+Q HQ         D    + L+ MY KCG+L DA  LF EI  +++V+W +MI+
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 273 GYAQHGKGEKALRLFDK--MKDEGMKPDS------ITFVALLLACN 310
           GY Q+    +AL LF +  +++ G + D       I  V++L AC+
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/608 (40%), Positives = 357/608 (58%), Gaps = 45/608 (7%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIP---QPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           TV   SVL G+A   G L +AQELFD+I      D  + N M++    N+  V  A   F
Sbjct: 167 TVTCTSVLQGYA-HNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNAR-VDLAEGLF 224

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
            ++ +++ ASW+ ++  + Q  ++  A+  F  MP+++S++++AM +   + G+L  A E
Sbjct: 225 AQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGARE 284

Query: 123 LFKVAPVKSVVAWTAMISGYM----------------------------------KFGKV 148
           + +      V+AW A++ GY                                   K G+V
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRV 344

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D A ++ D MP +  V+W AMIA Y +N  A + + L + M   G  P+  +L SV+  C
Sbjct: 345 DDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSC 404

Query: 209 SHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVV 265
           + L +L LGK++H  +  SPL  +    L  +I+MY KCG+LE A ++F  + ++ + VV
Sbjct: 405 AVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVV 464

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           TW AMI  YAQ+G GE+A+ LF +M  D G +P+ +TF+++L AC+H G ++   ++F S
Sbjct: 465 TWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCS 524

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACRVHKRL 383
           M  D+G+    DHY C+VDLLGRAG+L EA  L+ +   F+     +   LSAC+++  L
Sbjct: 525 MGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDL 584

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           + ++ AA  +  L P N AG  V L+N+YAA  +  DVARIR  MK + V K  G SWIE
Sbjct: 585 ERSQRAAKRVSELEPENVAG-RVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIE 643

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +   VHEF   D  HP  + I+ +L+ L + +K AGYVPD +  L  V EE K QLL +H
Sbjct: 644 INNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYH 703

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SE+LA+A G+I  P GT +RV KNLRVC DCH ATK+IS I  R+IIVRDT+RFHHFKDG
Sbjct: 704 SERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDG 763

Query: 564 TCSCGDYW 571
            CSCGDYW
Sbjct: 764 VCSCGDYW 771



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 185/425 (43%), Gaps = 61/425 (14%)

Query: 22  KLKDAQELFDKI---PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           KL +A+ L D+I   P  D      +L  +     D  AA   F R+ + +  SW+ +I 
Sbjct: 22  KLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQ 81

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTA 137
            +V    +  AR LF +MP  ++ +W+ MI+ Y    +LD A ELF  +   + VV+W  
Sbjct: 82  AYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAI 141

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP- 196
           +++GY +  +++ A  LF  MP  + VT  +++ GY  N    +  +L   + G G R  
Sbjct: 142 LVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDA 201

Query: 197 -----------------------------NASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
                                        NA+S S +LL  +    L L K+     F  
Sbjct: 202 TACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKK----SFDR 257

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
              +D+ A T + ++    G+L  A ++   +   DV+ WNA++ GY++ G  ++  RLF
Sbjct: 258 MPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLF 317

Query: 288 DKMKDEGMKPDSI--TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
             M+   +    +  T V L   C   G VD   +  D+M     ++     +T M+   
Sbjct: 318 SAMEHRTVATTVVAGTLVNLYGKC---GRVDDARRVLDAMPVRTSVS-----WTAMIAAY 369

Query: 346 GRAGKLVEAVDLIKKMPFK-PQP------------AIFGTLLSACRVHKRLDLAEFAAMN 392
            + G   EA++L + M  +  +P            A+ GTL    R+H R+  +   + +
Sbjct: 370 AQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQS 429

Query: 393 LFNLN 397
           L  LN
Sbjct: 430 LMLLN 434



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 184/402 (45%), Gaps = 73/402 (18%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
            WN ++A +A+   +L DA+ELF   I   DVVS+ I+++      D +  A   F+R+P
Sbjct: 106 TWNIMIAAYARI-NRLDDARELFHGMISGRDVVSWAILVAG-YARHDRLEEASALFRRMP 163

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLDKAVEL 123
           + DT +  +++ G+    ++A+A++LF  +    ++++ + +AMI+ Y +  ++D A  L
Sbjct: 164 LWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGL 223

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN--------------------- 162
           F    +++  +W+ ++  Y + G +DLA+K FD MP ++                     
Sbjct: 224 FAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAR 283

Query: 163 ----------LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
                     ++ WNA++ GY      ++  +L   M                       
Sbjct: 284 EMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAM----------------------- 320

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
                   H+ V        T     L+++Y KCG ++DA ++   +  +  V+W AMI+
Sbjct: 321 -------EHRTV------ATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIA 367

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
            YAQ+G   +A+ LF  M  EG +P  IT ++++ +C   G + LG +    + +    +
Sbjct: 368 AYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFS 427

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
                   ++ + G+ G L  A ++ + +P + +  +  T +
Sbjct: 428 QSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAM 469



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 29/325 (8%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +I  + +CG  D A  +F    + +  +W+ +I  Y+   ++  A  LFD MP  +  TW
Sbjct: 48  LIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTW 107

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N MIA Y   +  +D  +L   MI      +  S + ++ G +    L+   +   L  +
Sbjct: 108 NIMIAAYARINRLDDARELFHGMIS---GRDVVSWAILVAGYARHDRLE---EASALFRR 161

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI---QRKDVVTWNAMISGYAQHGKGEKA 283
            PL  DT   T ++  Y   G L +A +LF  I     +D    NAMI+ Y ++ + + A
Sbjct: 162 MPLW-DTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDLA 220

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
             LF ++K      ++ ++  LLL     G +DL  + FD M     IA     +T M  
Sbjct: 221 EGLFAQIK----LRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIA-----FTAMTA 271

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE----FAAMNLFNLNPA 399
           +L   G+L  A ++++ +      A    L    R     DL E    F+AM    +   
Sbjct: 272 VLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTG---DLDEVRRLFSAMEHRTVATT 328

Query: 400 NAAGCYVQLANIYAAMKKWDDVARI 424
             AG    L N+Y    + DD  R+
Sbjct: 329 VVAG---TLVNLYGKCGRVDDARRV 350



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 133/317 (41%), Gaps = 57/317 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+T+V+W +++A +A Q G   +A  LF  +        +I L  + ++S  V+    
Sbjct: 354 MPVRTSVSWTAMIAAYA-QNGNAAEAINLFQCMDLEGAEPSDITLISV-VDSCAVLGTLS 411

Query: 61  FFQRLPIKDTAS---------WNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMIS 109
             +R+  +  +S          N +I+ + +  N+  AR++F ++P   ++ V+W+AMI 
Sbjct: 412 LGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIR 471

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            Y + G  ++A+ELF+                          E + D     N VT+ ++
Sbjct: 472 AYAQNGVGEEAIELFQ--------------------------EMVIDGGTEPNRVTFLSV 505

Query: 170 IA-----GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQ 222
           ++     G +E +W         M    G+ P       +  LLG     + +LG+    
Sbjct: 506 LSACSHLGQLEQAWEH----FCSMGPDFGVPPAGDHYCCLVDLLG----RAGRLGEAEKL 557

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLE---DACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           L+       D       +S     GDLE    A K   E++ ++V     + + YA  G+
Sbjct: 558 LLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGR 617

Query: 280 GEKALRLFDKMKDEGMK 296
                R+ ++MK  G+K
Sbjct: 618 RADVARIRNEMKSSGVK 634



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A      +  C+    L   K +H  + +SP   +      LI ++ KCGD + A  +F 
Sbjct: 7   ARRFEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFN 66

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            ++  +  +W+ +I  Y    +   A  LFD M       D+ T+  ++ A      +D 
Sbjct: 67  RVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMP----GFDAFTWNIMIAAYARINRLDD 122

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
             + F  M++   + +    +  +V    R  +L EA  L ++MP 
Sbjct: 123 ARELFHGMISGRDVVS----WAILVAGYARHDRLEEASALFRRMPL 164


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/583 (39%), Positives = 355/583 (60%), Gaps = 15/583 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK    WN++++ +  Q G+ + A   F+K+P  D+VS+N M+S       ++ A   
Sbjct: 203 MTVKNISTWNALISLYM-QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVI 261

Query: 61  FFQRLPIKDTASWNTMISGFV------QKKNMAKARDLFL--AMPEKNSVSWSAMISGYI 112
           F + L        N  ++  +      +K N+ K    ++  A  E +    +A+IS Y 
Sbjct: 262 FSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYA 321

Query: 113 ECGQLDKA---VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           + G ++ A   VE  + + + +++A+T+++ GY K G V  A ++F+++  +++V W AM
Sbjct: 322 KSGGVEIARLIVEHNRTSNL-NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAM 380

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GYV+N    D L+L R+M+  G  PN+ +L+++L   S L+ L+ GKQ+H    K+  
Sbjct: 381 IVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGE 440

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               +    LI+MY K G++  A ++F L   +K++V+W +MI   AQHG G++A+ LF+
Sbjct: 441 SSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFE 500

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M   GMKPD IT+V +L AC H GLV+ G +Y++ M   + I     HY CM+DL GRA
Sbjct: 501 RMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRA 560

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G L EA   I+ MP +P    +G+LL++C++HK  DLA+ AA  L  ++P N+ G Y+ L
Sbjct: 561 GLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNS-GAYLAL 619

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           AN+Y+A  KW++ A+ R  MK+  V K  G SWI +   VH F   D +HP+   I++ +
Sbjct: 620 ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLM 679

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            E+ + +K  G++PD E  LH + EEVKEQ+L +HSEKLAIAFGL+  P  T +R+ KNL
Sbjct: 680 AEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNL 739

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVC DCH A K+IS +  REIIVRD TRFHHFKDG+CSC DYW
Sbjct: 740 RVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 192/394 (48%), Gaps = 47/394 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVV 56
           M +K+T +WN++++G+AKQ G  + ++ L  ++P  D VS+  ++  +  N     D+ +
Sbjct: 71  MPLKSTFSWNTLISGYAKQ-GNFEVSRRLLYEMPDCDPVSWTAII--VGYNQFGLFDNAI 127

Query: 57  AAFD--FFQRLPIKDTASWNTMIS-GFVQKKNMAKARDLFLAMPEKNSVS--WSAMISGY 111
             F     +R+P       N + S    Q  ++ +    F+      S     +++++ Y
Sbjct: 128 WMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMY 187

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            +CG    A  +F    VK++  W A+IS YM+ G+ +LA   F++MP +++V+WN+MI+
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 172 GYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           GY +  +  + L +   M+    ++P+  +L+S+L  C++L  L +GKQ+H  + ++   
Sbjct: 248 GYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 231 KDTTALTPLISMYCKCGDLE---------------------------------DACKLFL 257
                   LISMY K G +E                                  A ++F 
Sbjct: 308 TSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           +++ +DVV W AMI GY Q+G    AL LF  M +EG +P+S T  A+L   +   +++ 
Sbjct: 368 KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           G Q   S +   G ++ P     ++ +  + G +
Sbjct: 428 GKQIHASAIKA-GESSTPSVTNALIAMYAKTGNI 460



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 32/246 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +++ Y + G L  A  +F   P+KS  +W  +ISGY K G  +++ +L  EMP  + V+W
Sbjct: 51  LMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSW 110

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            A+I GY +    ++ + +   MI   + P+  ++S+VL  C+   +L +G+++H  V K
Sbjct: 111 TAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK 170

Query: 227 SPLCKDTTALTPLISMYCKCGD-------------------------------LEDACKL 255
             L       T L++MY KCGD                                E A   
Sbjct: 171 LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ 230

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 314
           F ++  +D+V+WN+MISGY+Q G   +AL +F KM +E  +KPD+ T  ++L AC +   
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 315 VDLGIQ 320
           +++G Q
Sbjct: 291 LNIGKQ 296



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+ VH  + K  L      +  L++ Y K G L  A  +F E+  K   +WN +ISGYA+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            G  E + RL  +M D     D +++ A+++  N  GL D  I  F  M+++
Sbjct: 89  QGNFEVSRRLLYEMPD----CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/583 (39%), Positives = 355/583 (60%), Gaps = 15/583 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK    WN++++ +  Q G+ + A   F+K+P  D+VS+N M+S       ++ A   
Sbjct: 203 MTVKNISTWNALISLYM-QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAI 261

Query: 61  FFQRLPIKDTASWNTMISGFV------QKKNMAKARDLFL--AMPEKNSVSWSAMISGYI 112
           F + L        N  ++  +      +K N+ K    ++  A  E +    +A+IS Y 
Sbjct: 262 FSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYA 321

Query: 113 ECGQLDKA---VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           + G ++ A   VE  + + + +++A+T+++ GY K G V  A ++F+++  +++V W AM
Sbjct: 322 KSGGVEIARLIVEHNRTSNL-NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAM 380

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GYV+N    D L+L R+M+  G  PN+ +L+++L   S L+ L+ GKQ+H    K+  
Sbjct: 381 IVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGE 440

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               +    LI+MY K G++  A ++F L   +K++V+W +MI   AQHG G++A+ LF+
Sbjct: 441 SSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFE 500

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M   GMKPD IT+V +L AC H GLV+ G +Y++ M   + I     HY CM+DL GRA
Sbjct: 501 RMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRA 560

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G L EA   I+ MP +P    +G+LL++C++HK  DLA+ AA  L  ++P N+ G Y+ L
Sbjct: 561 GLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNS-GAYLAL 619

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           AN+Y+A  KW++ A+ R  MK+  V K  G SWI +   VH F   D +HP+   I++ +
Sbjct: 620 ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLM 679

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            E+ + +K  G++PD E  LH + EEVKEQ+L +HSEKLAIAFGL+  P  T +R+ KNL
Sbjct: 680 AEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNL 739

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVC DCH A K+IS +  REIIVRD TRFHHFKDG+CSC DYW
Sbjct: 740 RVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 192/394 (48%), Gaps = 47/394 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVV 56
           M +K+T +WN++++G+AKQ G  + ++ L  ++P  D VS+  ++  +  N     D+ +
Sbjct: 71  MPLKSTFSWNTLISGYAKQ-GNFEVSRRLLYEMPDCDPVSWTAII--VGYNQFGLFDNAI 127

Query: 57  AAFD--FFQRLPIKDTASWNTMIS-GFVQKKNMAKARDLFLAMPEKNSVS--WSAMISGY 111
             F     +R+P       N + S    Q  ++ +    F+      S     +++++ Y
Sbjct: 128 WMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMY 187

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            +CG    A  +F    VK++  W A+IS YM+ G+ +LA   F++MP +++V+WN+MI+
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 172 GYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           GY +  +  + L +   M+    ++P+  +L+S+L  C++L  L +GKQ+H  + ++   
Sbjct: 248 GYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 231 KDTTALTPLISMYCKCGDLE---------------------------------DACKLFL 257
                   LISMY K G +E                                  A ++F 
Sbjct: 308 TSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           +++ +DVV W AMI GY Q+G    AL LF  M +EG +P+S T  A+L   +   +++ 
Sbjct: 368 KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           G Q   S +   G ++ P     ++ +  + G +
Sbjct: 428 GKQIHASAIKA-GESSTPSVTNALIAMYAKTGNI 460



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 32/246 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +++ Y + G L  A  +F   P+KS  +W  +ISGY K G  +++ +L  EMP  + V+W
Sbjct: 51  LMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSW 110

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            A+I GY +    ++ + +   MI   + P+  ++S+VL  C+   +L +G+++H  V K
Sbjct: 111 TAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK 170

Query: 227 SPLCKDTTALTPLISMYCKCGD-------------------------------LEDACKL 255
             L       T L++MY KCGD                                E A   
Sbjct: 171 LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ 230

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 314
           F ++  +D+V+WN+MISGY+Q G   +AL +F KM +E  +KPD+ T  ++L AC +   
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 315 VDLGIQ 320
           +++G Q
Sbjct: 291 LNIGKQ 296



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+ VH  + K  L      +  L++ Y K G L  A  +F E+  K   +WN +ISGYA+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            G  E + RL  +M D     D +++ A+++  N  GL D  I  F  M+++
Sbjct: 89  QGNFEVSRRLLYEMPD----CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/651 (38%), Positives = 355/651 (54%), Gaps = 85/651 (13%)

Query: 3   VKTTVNWN-----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA 57
           + +  +WN      V+  +AK R ++ DA  +FD++P+ D+V +N M+S    N    VA
Sbjct: 57  ITSGFSWNLFAMTGVVNMYAKCR-QINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVA 115

Query: 58  ---------------AFDFFQRLP-IKDTA--SWNTMISGFVQKK--------------- 84
                          +      LP + DT        + G+V +                
Sbjct: 116 LMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDM 175

Query: 85  -----NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVV 133
                +++ AR +F  M  +  VSW++MI GY++ G  + A+ +F+      V P    V
Sbjct: 176 YSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235

Query: 134 ---------------------------------AWTAMISGYMKFGKVDLAEKLFDEMPT 160
                                               ++IS Y K  +VD+A  +F  +  
Sbjct: 236 MGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN 295

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           K LV+WNAMI GY +N    + L     M    I+P++ ++ SV+   + LS  +  K +
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWI 355

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H LV +  L K+   +T L+ MY KCG +  A KLF  +  + V+TWNAMI GY  HG G
Sbjct: 356 HGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLG 415

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           + ++ LF +MK   +KP+ ITF+  L AC+H+GLV+ G+ +F+SM  DYGI    DHY  
Sbjct: 416 KTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGA 475

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDLLGRAG+L +A D I+KMP KP   ++G +L AC++HK +DL E AA  +F LNP +
Sbjct: 476 MVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNP-D 534

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G +V LANIYA    W  VA++R  M+++ + K PG S +E+G  VH F SG   HP+
Sbjct: 535 DGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQ 594

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L   ++ AGYVPD   ++H V ++VK QLL  HSEKLAIAFGL+    GT
Sbjct: 595 SKKIYSYLETLVDEIRAAGYVPDTN-SIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGT 653

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PI + KNLRVCGDCH ATKYIS +  REIIVRD  RFH FKDG CSCGDYW
Sbjct: 654 PIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 1/183 (0%)

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M+ GY ++S  +  L     M    +RP   + + +L  C   S L+ GK++H  V  S 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              +  A+T +++MY KC  + DA  +F  +  +D+V WN MISGYAQ+G  + AL L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M +EG +PDSIT V++L A     L+ +G+     ++   G  +  +  T +VD+  + 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR-AGFESLVNVSTALVDMYSKC 179

Query: 349 GKL 351
           G +
Sbjct: 180 GSV 182


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 354/616 (57%), Gaps = 47/616 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVS----------------- 40
           M  +  V+WN+V+AG+A+    R  ++   ++ +   +PD ++                 
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262

Query: 41  -------------YNIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                        Y + ++  +L++      V +A   F+ +  ++  SWNTMI G+ Q 
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 84  KNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAW 135
               +A   FL M     E  +VS    +      G L++   + ++   K     V   
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVM 382

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++IS Y K  +VD+A  +F  +  K +VTWNAMI GY +N    + L L   M    I+
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIK 442

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ +L SV+   + LS  +  K +H L  ++ + K+    T LI  + KCG ++ A KL
Sbjct: 443 PDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKL 502

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +Q + V+TWNAMI GY  +G G +AL LF++M++  +KP+ ITF++++ AC+H+GLV
Sbjct: 503 FDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLV 562

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G+ YF+SM  +YG+    DHY  MVDLLGRAG+L +A   I+ MP KP   + G +L 
Sbjct: 563 EEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLG 622

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+HK ++L E  A  LF+L+P +  G +V LAN+YA+   WD VAR+R +M++  + K
Sbjct: 623 ACRIHKNVELGEKTADELFDLDP-DDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQK 681

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG S +E+   VH F SG   HP+   I+  L+ L   MK AGYVPD   ++H V E+V
Sbjct: 682 TPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTN-SIHDVEEDV 740

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KEQLL  HSE+LAIAFGL+    GT I + KNLRVCGDCH ATKYIS +  REIIVRD  
Sbjct: 741 KEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLR 800

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHFK+G CSCGDYW
Sbjct: 801 RFHHFKNGICSCGDYW 816



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 173/366 (47%), Gaps = 51/366 (13%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A+  F+R+P +D  SWNT+++G+ Q     +A  + L M E     +S++  +++    +
Sbjct: 196 AYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVAD 255

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              L     +    F+      V   TAM+  Y K G V  A  +F  M ++N+V+WN M
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTM 315

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY +N  +E+       M+  G+ P   S+   L  C++L  L+ G+ VH+L+ +  +
Sbjct: 316 IDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKI 375

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D + +  LISMY KC  ++ A  +F  ++ K VVTWNAMI GYAQ+G   +AL LF +
Sbjct: 376 GFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCE 435

Query: 290 MKDEGMKPDSITFVALLLAC---------------------------------NHA--GL 314
           M+   +KPDS T V+++ A                                   HA  G 
Sbjct: 436 MQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGA 495

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFG 371
           +    + FD M   + I      +  M+D  G  G   EA+DL  +M     KP    F 
Sbjct: 496 IQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFL 550

Query: 372 TLLSAC 377
           ++++AC
Sbjct: 551 SVIAAC 556



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +IS + KF  +  A ++F+ +  K  V ++ M+ GY +NS   D ++    M    + 
Sbjct: 80  TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P     + +L        L+ G+++H +V  +    +  A+T ++++Y KC  +EDA K+
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM 199

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  + ++D+V+WN +++GYAQ+G   +A+++  +M++ G KPDSIT V++L A     + 
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA-----VA 254

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKM 361
           DL        ++ Y   A  ++     T M+D   + G +  A  + K M
Sbjct: 255 DLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 202 SSVLLG-CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           S++LL  C+ L  L    Q+  L+ K+    +    T LIS++CK   + +A ++F  ++
Sbjct: 47  SAILLELCTSLKELH---QILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVE 103

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K  V ++ M+ GYA++     A+R +++M+ + + P    F  LL        +  G +
Sbjct: 104 HKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE 163

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               MV   G  +     T +V+L  +  ++ +A  + ++MP
Sbjct: 164 -IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP 204


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/479 (45%), Positives = 308/479 (64%), Gaps = 2/479 (0%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
           A+ LF  M  ++ VSW+ +ISGY   G +DKA  +F     K++V+W+ MISGY + G +
Sbjct: 181 AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNL 240

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLG 207
           + A +LF+ MP +N+V+WNAMIAGY +N    D ++L R M   G + PN  +L SVL  
Sbjct: 241 EEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSA 300

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+HL +L LGK +H+ + ++ +         L  MY KCG + +A  +F E+  +DV++W
Sbjct: 301 CAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISW 360

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           + +I G A +G   +A   F +M ++G++P+ I+F+ LL AC HAGLVD G++YFD M  
Sbjct: 361 SIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQ 420

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
            YGI  K +HY C+VDLL RAG+L +A  LI  MP +P   ++G LL  CR++K  +  E
Sbjct: 421 VYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGE 480

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
                +  L+ +N +G  V LAN+YA+M + DD A  RL M++N  +K PG SWIE+   
Sbjct: 481 RVVWRILELD-SNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNS 539

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           V+EF  GD  HP+ + I+  ++EL+ +MK+AGY P  +  +H + EE KE  L  HSEKL
Sbjct: 540 VYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKL 599

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           A+AFGLI    GT IR+ KNLRVC DCH A K IS I +REI+VRD +RFHHFKDG CS
Sbjct: 600 ALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 140/312 (44%), Gaps = 62/312 (19%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
           AQ+LFD++   DVVS+N ++S  C     D     FD       K+  SW+TMISG+ + 
Sbjct: 181 AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMME---KNLVSWSTMISGYARV 237

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------VAP----VKSV 132
            N+ +AR LF  MP +N VSW+AMI+GY +  +   A+ELF+       +AP    + SV
Sbjct: 238 GNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSV 297

Query: 133 VA------------W-----------------TAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           ++            W                  A+   Y K G V  A+ +F EM  +++
Sbjct: 298 LSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDV 357

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           ++W+ +I G     +A +       MI  G+ PN  S   +L  C+H   +  G +   +
Sbjct: 358 ISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDM 417

Query: 224 VFKSPLCKDTTALTPLISMY-------CKCGDLEDACKLFLEI-QRKDVVTWNAMISG-- 273
           +           +TP I  Y        + G L+ A  L   +  + +V+ W A++ G  
Sbjct: 418 M------PQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCR 471

Query: 274 -YAQHGKGEKAL 284
            Y    +GE+ +
Sbjct: 472 IYKDAERGERVV 483



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 15/233 (6%)

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCSHLSSLQLGKQ 219
           N+  +NA++  + +++     +      + L   PN    + +SVL  C+ L+ +  G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           VH  V K     +      L+ +Y K G    A KLF E+  +DVV+WN +ISGY   G 
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
            +KA  +FD M    M+ + +++  ++      G ++   Q F++M     ++     + 
Sbjct: 209 VDKARMVFDGM----MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVS-----WN 259

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFK----PQPAIFGTLLSACRVHKRLDLAEF 388
            M+    +  K  +A++L ++M  +    P      ++LSAC     LDL ++
Sbjct: 260 AMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKW 312


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/579 (41%), Positives = 339/579 (58%), Gaps = 22/579 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N VL  F+   G    +  +F +  +P++  +N M+  ++LN D    + + +  +  K+
Sbjct: 46  NKVLR-FSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN-DSFQESIEIYHSMR-KE 102

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDK 119
             S ++    F+ K   A+  D  L +           E ++   ++++S Y +CG +D 
Sbjct: 103 GLSPDSFTFPFLLKA-CARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDN 161

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGK----VDLAEK---LFDEMPTKNLVTWNAMIAG 172
           A ++F   P K+V AWTA+ISGY+  GK    +D+  +   +FD M  K++V+W++MI G
Sbjct: 162 AFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQG 221

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y  N   ++ L L   M+  G RP+  ++  VL  C+ L +L+LG     L+ ++    +
Sbjct: 222 YASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGN 281

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI MY KCG ++ A ++F  +++KD+V WNA ISG A  G  + A  LF +M+ 
Sbjct: 282 PVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEK 341

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G++PD  TFV LL AC HAGLVD G QYF+SM   + +  + +HY CMVDLLGRAG L 
Sbjct: 342 SGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLD 401

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA  L+K MP +    ++G LL  CR+H+   L E     L  L P+N +G YV L+NIY
Sbjct: 402 EAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSN-SGNYVLLSNIY 460

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           +A  KW+D A+IR  M E  + K+PGYSWIEV  VVHEF  GD  HP    I+ KL EL 
Sbjct: 461 SASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELV 520

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           K +K +GYVP  ++ L  + EE KE  +  HSEKLAIAFGLI       IRV KNLRVCG
Sbjct: 521 KDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCG 580

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K+IS    REIIVRD  RFH F DG+CSC DYW
Sbjct: 581 DCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 5/160 (3%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            +SL+  K VH  + +  L +D+  L  ++      G+   + ++F + +  ++  +N M
Sbjct: 20  FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--LGIQYFDSMVND 328
           I G   +   ++++ ++  M+ EG+ PDS TF  LL AC  A L+D  LGI+    +V  
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKAC--ARLLDSKLGIK-LHGLVVK 136

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
            G  +     T +V L G+ G +  A  +   +P K   A
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAA 176


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/556 (41%), Positives = 337/556 (60%), Gaps = 12/556 (2%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD++   +VV YN M++  LL    V  A   F+ +  +D+ +W TM++GF Q  
Sbjct: 193 DAKRAFDEVDSKNVVMYNTMITG-LLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNG 251

Query: 85  NMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVE--------LFKVAPVKSVVAW 135
             ++A ++F  M  +  ++      S    CG L  A+E        + +     +V   
Sbjct: 252 LESEALEIFRRMRFQGIAIDQYTFGSILTACGAL-SALEQGKQIHAYIIRTRYDDNVFVG 310

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +A++  Y K   + LAE +F  M  KN+++W A+I GY +N  +E+ +++   M   GI 
Sbjct: 311 SALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L SV+  C++L+SL+ G Q H L   S L    T    L+++Y KCG +EDA +L
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRL 430

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E+   D V+W A++SGYAQ G+ ++ + LF+KM  +G+KPD +TF+ +L AC+ AG V
Sbjct: 431 FDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFV 490

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G  YF SM  D+GI    DHYTCM+DL  R+GKL EA + IK+MP  P    +GTLLS
Sbjct: 491 EKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLS 550

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+   +++ ++AA NL  ++P N A  YV L +++AA  +W++VA++R  M++  V K
Sbjct: 551 ACRLRGDMEIGKWAAENLLEIDPQNPAS-YVLLCSMHAAKGQWNEVAQLRRGMRDRQVKK 609

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG SWI+    VH F + D+ HP    I+EKL+ L  +M   GY PD+   LH V +  
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTD 669

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           K  ++  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH ATK+IS I  R+I+VRD  
Sbjct: 670 KVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 729

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH F DG CSCGD+W
Sbjct: 730 RFHKFSDGVCSCGDFW 745



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 189/398 (47%), Gaps = 44/398 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  + K  G+   A+ +FD +P P++ +YN +LS  L ++  +      F  +  +D
Sbjct: 45  NHLLTAYGKA-GRHARARRVFDAMPHPNLFTYNALLS-TLAHARLLSDMEALFASMTQRD 102

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM--------PEK---------------------- 99
             S+N +I+GF    + A+A  ++LA+        P +                      
Sbjct: 103 IVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
                      N+   S ++  Y +   +  A   F     K+VV +  MI+G ++   V
Sbjct: 163 HCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMV 222

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           + A +LF+ M  ++ +TW  M+ G+ +N    + L++ R M   GI  +  +  S+L  C
Sbjct: 223 EEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTAC 282

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
             LS+L+ GKQ+H  + ++    +    + L+ MY KC  ++ A  +F  +  K++++W 
Sbjct: 283 GALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWT 342

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           A+I GY Q+G  E+A+R+F +M+ +G+ PD  T  +++ +C +   ++ G Q F  +   
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHCLALV 401

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            G+         +V L G+ G + +A  L  +M F  Q
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/544 (41%), Positives = 335/544 (61%), Gaps = 17/544 (3%)

Query: 42  NIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           +++ S IL+N      + DF    F  +P +   SWNTMI    Q     +A DL L M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 98  EKNSVSWSAMISGYI----------ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
            + +      IS  +          EC QL  A  + K A   +V   TA++  Y K G 
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSEC-QLLHAFAI-KAAMDLNVFVATALLDVYAKCGL 215

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A  +F+ MP +++VTW++M AGYV+N   E  L L R     G++ +   +SSV+  
Sbjct: 216 MKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICA 275

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L+++  GKQV+ L+ KS  C +    + LI MY KCG +E++ K+F ++++++VV W
Sbjct: 276 CAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLW 335

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NAMISG ++H +  + + LF+KM+  G+ P+ +TFV++L AC H GLV  G +YFD M  
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTK 395

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           ++ +A    HY+CMVD L RAG++ EA DLI K+PF    +++G+LL++CR H  L+LAE
Sbjct: 396 EHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAE 455

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
            AA  LF++ P N +G Y+ L+N+YAA  KWD+VA++R  +KE++V K  G SWIE+   
Sbjct: 456 VAAKKLFDIEPHN-SGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDK 514

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           VH F  G+R HP++V I+ KL E+   ++  GY  + +  LH VGE +K++LL  HSEKL
Sbjct: 515 VHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKL 574

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           A   GL+ +P   PIR+ KNLR+CGDCH   K  S    R++IVRDT RFHHFK+G CSC
Sbjct: 575 AFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSC 634

Query: 568 GDYW 571
           GD+W
Sbjct: 635 GDFW 638



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + S +  +L  C+    L  GK  H  +    L  D      LI+MY KCG ++ A ++F
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLV 315
            E+  + +V+WN MI    Q+G+  +AL L  +M+ EG      T  ++L AC     L 
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALS 182

Query: 316 DLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMP 362
           +        +++ + I A  D      T ++D+  + G + +AV + + MP
Sbjct: 183 EC------QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/600 (39%), Positives = 341/600 (56%), Gaps = 46/600 (7%)

Query: 15  GFAKQRGKLKDAQELFDKIPQPDVVSY---NIMLSCILLNSDDVVAAF--DFFQRLPIKD 69
           GF+ Q  KL   QE    +   +  S+   N +  CI  +          +  +R    D
Sbjct: 15  GFSVQSAKL--TQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLD 72

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----- 124
             +WN +++ +V+   +  A  LF  MPE+N++S+  +I GY E  +  +A+ELF     
Sbjct: 73  LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR 132

Query: 125 ---------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLA 151
                                            K+     V    A++  Y K G+++ +
Sbjct: 133 EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENS 192

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            +LF E P +N VTWN +I G+V+    E  L+L   M+   ++    + SS L  C+ L
Sbjct: 193 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 252

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           ++L+ G Q+H L  K+   KD      LI MY KCG ++DA  +F  + ++D V+WNAMI
Sbjct: 253 AALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMI 312

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGY+ HG G +ALR+FDKM++  +KPD +TFV +L AC +AGL+D G  YF SM+ D+GI
Sbjct: 313 SGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGI 372

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
               +HYTCMV LLGR G L +AV LI ++PF+P   ++  LL AC +H  ++L   +A 
Sbjct: 373 EPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQ 432

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            +  + P + A  +V L+N+YA  K+WD+VA +R +MK   V K PG SWIE    VH F
Sbjct: 433 RVLEMEPQDKA-THVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSF 491

Query: 452 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 511
             GD  HPE+  I+  L+ L  + K AGY+P+    L  V +E KE+LL  HSE+LA++F
Sbjct: 492 TVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSF 551

Query: 512 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           G+I+ P G+PIR+ KNLR+C DCH A K IS + +REI+VRD  RFHHF++G CSCGDYW
Sbjct: 552 GIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP---NASSLSSVLLGCSHLSSLQLGKQ 219
           +V  N  +  +    ++    KL +  +G  + P   N+ + ++ L  C        GK 
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQEFVG-HVSPSEFNSHAYANALQDCIQKDEPSRGKG 59

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  + K   C D  A   L++MY K   L DA KLF E+  ++ +++  +I GYA+  +
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +A+ LF ++  E + P+  TF ++L AC     ++LG Q    ++   G+ +      
Sbjct: 120 FLEAIELFVRLHREVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVFVSN 177

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFK 364
            ++D+  + G++  +++L  + P +
Sbjct: 178 ALMDVYAKCGRMENSMELFAESPHR 202



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)

Query: 1   MNVKTT-----VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SD 53
           + VKTT     V  N+++  +AK  G +KDA+ +FD + + D VS+N M+S   ++    
Sbjct: 264 LTVKTTFDKDIVVTNALIDMYAKC-GSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGR 322

Query: 54  DVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAM 107
           + +  FD  Q   +K D  ++  ++S       + + +  F +M + + +      ++ M
Sbjct: 323 EALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCM 382

Query: 108 ISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLA 151
           +      G LDKAV+L    P + SV+ W A++   +    ++L 
Sbjct: 383 VWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELG 427


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/618 (39%), Positives = 351/618 (56%), Gaps = 50/618 (8%)

Query: 1   MNVKTTVNWNSVLAGFAK----------------QRGKLKDAQELFDKIPQ--------- 35
           M V+  V WN+++AG+A+                + G+  D+  L   +P          
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 36  -------------PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                         ++V+    +        D+ AA   F  +P K++ SWN MI G+ Q
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVA 134
             +  +A  LF  M E+      VS  A +    E G LD+ +     L ++    +V  
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I+ Y K  +VDLA  +FDE+  +  V+WNAMI G  +N  +ED ++L   M    +
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P++ +L SV+   + +S     + +H    +  L +D   LT LI MY KCG +  A  
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF   + + V+TWNAMI GY  HG G+ A+ LF++MK  G+ P+  TF+++L AC+HAGL
Sbjct: 420 LFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGL 479

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           VD G +YF SM  DYG+    +HY  MVDLLGRAGKL EA   I+KMP  P  +++G +L
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAML 539

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCY-VQLANIYAAMKKWDDVARIRLSMKENNV 433
            AC++HK ++LAE +A  +F L P    G Y V LANIYA    W DVAR+R +M++N +
Sbjct: 540 GACKLHKNVELAEESAQKIFELGPQE--GVYHVLLANIYANASMWKDVARVRTAMEKNGL 597

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG+S I++   +H F SG   H +   I+ +L +L + +K  GYVPD + ++H V +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVED 656

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           +VK QLL  HSEKLAIAFGLI+   GT I++ KNLRVC DCH ATK IS +  REII+RD
Sbjct: 657 DVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRD 716

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHFKDG CSCGDYW
Sbjct: 717 IQRFHHFKDGKCSCGDYW 734



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 20/304 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQ 116
           F R+P++D  +WN +++G+ +      A ++ + M E+     +S++  +++        
Sbjct: 117 FDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARA 176

Query: 117 LDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           L    E    A ++S     V   TA++  Y K G +  A  +FD MPTKN V+WNAMI 
Sbjct: 177 LAACREAHAFA-IRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +N  + + L L   M+  G+     S+ + L  C  L  L  G +VH+L+ +  L  
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           + + +  LI+MY KC  ++ A  +F E+ R+  V+WNAMI G AQ+G  E A+RLF +M+
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGR 347
            E +KPDS T V+++ A     L D+        ++ Y I    D      T ++D+  +
Sbjct: 356 LENVKPDSFTLVSVIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 410

Query: 348 AGKL 351
            G++
Sbjct: 411 CGRV 414



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 114/195 (58%), Gaps = 1/195 (0%)

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIG 191
           +A TA+ + Y K  +   A ++FD MP ++ V WNA++AGY  N  A   +++ +RM   
Sbjct: 95  LAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEE 154

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G RP++ +L SVL  C++  +L   ++ H    +S L +     T ++  YCKCGD+  
Sbjct: 155 EGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRA 214

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F  +  K+ V+WNAMI GYAQ+G   +AL LF++M +EG+    ++ +A L AC  
Sbjct: 215 ARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGE 274

Query: 312 AGLVDLGIQYFDSMV 326
            G +D G++  + +V
Sbjct: 275 LGCLDEGMRVHELLV 289



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G  P   + +S+L  C+    L  G+ VH  +    +  +  A T L +MY KC  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALL 306
             DA ++F  +  +D V WNA+++GYA++G    A+ +  +M+ +EG +PDSIT V++L
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/618 (39%), Positives = 351/618 (56%), Gaps = 50/618 (8%)

Query: 1   MNVKTTVNWNSVLAGFAK----------------QRGKLKDAQELFDKIPQ--------- 35
           M V+  V WN+++AG+A+                + G+  D+  L   +P          
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 36  -------------PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                         ++V+    +        D+ AA   F  +P K++ SWN MI G+ Q
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVA 134
             +  +A  LF  M E+      VS  A +    E G LD+ +     L ++    +V  
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I+ Y K  +VDLA  +FDE+  +  V+WNAMI G  +N  +ED ++L   M    +
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P++ +L SV+   + +S     + +H    +  L +D   LT LI MY KCG +  A  
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF   + + V+TWNAMI GY  HG G+ A+ LF++MK  G+ P+  TF+++L AC+HAGL
Sbjct: 420 LFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGL 479

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           VD G +YF SM  DYG+    +HY  MVDLLGRAGKL EA   I+KMP  P  +++G +L
Sbjct: 480 VDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAML 539

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCY-VQLANIYAAMKKWDDVARIRLSMKENNV 433
            AC++HK ++LAE +A  +F L P    G Y V LANIYA    W DVAR+R +M++N +
Sbjct: 540 GACKLHKNVELAEESAQKIFELGPQE--GVYHVLLANIYANASMWKDVARVRTAMEKNGL 597

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG+S I++   +H F SG   H +   I+ +L +L + +K  GYVPD + ++H V +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVED 656

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           +VK QLL  HSEKLAIAFGLI+   GT I++ KNLRVC DCH ATK IS +  REII+RD
Sbjct: 657 DVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRD 716

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHFKDG CSCGDYW
Sbjct: 717 IQRFHHFKDGKCSCGDYW 734



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 158/304 (51%), Gaps = 20/304 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQ 116
           F R+P++D  +WN +++G+ +      A ++ + M E+     +S++  +++        
Sbjct: 117 FDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARA 176

Query: 117 LDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           L    E    A ++S     V   TA++  Y K G +  A  +FD MPTKN V+WNAMI 
Sbjct: 177 LAACREAHAFA-IRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +N  + + L L   M+  G+     S+ + L  C  L  L  G +VH+L+ +  L  
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           + + +  LI+MY KC  ++ A  +F E+ R+  V+WNAMI G AQ+G  E A+RLF +M+
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGR 347
            E +KPDS T V+++ A     L D+        ++ Y I    D      T ++D+  +
Sbjct: 356 LENVKPDSFTLVSVIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 410

Query: 348 AGKL 351
            G++
Sbjct: 411 CGRV 414



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 114/195 (58%), Gaps = 1/195 (0%)

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIG 191
           +A TA+ + Y K  +   A ++FD MP ++ V WNA++AGY  N  A   +++ +RM   
Sbjct: 95  LAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEE 154

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G RP++ +L SVL  C++  +L   ++ H    +S L +     T ++  YCKCGD+  
Sbjct: 155 EGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRA 214

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F  +  K+ V+WNAMI GYAQ+G   +AL LF++M +EG+    ++ +A L AC  
Sbjct: 215 ARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGE 274

Query: 312 AGLVDLGIQYFDSMV 326
            G +D G++  + +V
Sbjct: 275 LGCLDEGMRVHELLV 289



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G  P   + +S+L  C+    L  G+ VH  +    +  +  A T L +MY KC  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALL 306
             DA ++F  +  +D V WNA+++GYA++G    A+ +  +M+ +EG +PDSIT V++L
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/571 (40%), Positives = 336/571 (58%), Gaps = 12/571 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S L     + G ++DA+ +F ++    VV YN +++  LL    +  A   FQ +  +D
Sbjct: 184 GSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG-LLRCKMIEDAKGLFQLMVDRD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           + +W TM++G  Q     +A D+F  M  E   +      S    CG L  A+E  K   
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGAL-AALEEGKQIH 301

Query: 129 VKSVVAW--------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                 W        +A++  Y K   + LAE +F  M  +N+++W AMI GY +N+ +E
Sbjct: 302 AYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSE 361

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + ++    M   GI+P+  +L SV+  C++L+SL+ G Q H L   S L +  T    L+
Sbjct: 362 EAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALV 421

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG +EDA +LF E+   D V+W A+++GYAQ GK ++ + LF+KM   G+KPD +
Sbjct: 422 TLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGV 481

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +L AC+ AGLV+ G  YFDSM  D+GI    DHYTCM+DL  R+G+  EA + IK+
Sbjct: 482 TFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQ 541

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP  P    + TLLS+CR+   +++ ++AA NL   +P N A  YV L +++AA  +W +
Sbjct: 542 MPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPAS-YVLLCSMHAAKGQWTE 600

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA +R  M++  V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M   GY
Sbjct: 601 VAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGY 660

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
            PD+   LH V +  K  ++  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH ATK+
Sbjct: 661 KPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKF 720

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I  R+I+VRD  RFH F DGTCSCGD+W
Sbjct: 721 ISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 202/441 (45%), Gaps = 75/441 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  +AK  G+L  A+ +FD++P P++ + N +LS  L +S  V      F  +P +D
Sbjct: 52  NHLLTAYAKS-GRLARARRVFDEMPDPNLFTRNALLSA-LAHSRLVPDMERLFASMPERD 109

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-----SWSAMI---------------- 108
             S+N +I+GF    + A++  L+ A+  + SV     + SAMI                
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 109 -------------------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
                                Y + G +  A  +F+    K+VV +  +I+G ++   ++
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A+ LF  M  ++ +TW  M+ G  +N    + L + R M   G+  +  +  S+L  C 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L++L+ GKQ+H  + ++    +    + L+ MY KC  +  A  +F  +  +++++W A
Sbjct: 290 ALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 322
           MI GY Q+   E+A+R F +M+ +G+KPD  T  +++ +C +   ++ G Q+        
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 323 --------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIK 359
                   +++V  YG     +                +T +V    + GK  E +DL +
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 360 KM---PFKPQPAIFGTLLSAC 377
           KM     KP    F  +LSAC
Sbjct: 470 KMLANGLKPDGVTFIGVLSAC 490



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 43/202 (21%)

Query: 212 SSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLE-------------------- 250
           + +++   VH L+ K+ L    T  L  L++ Y K G L                     
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNAL 85

Query: 251 -----------DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPD 298
                      D  +LF  +  +D V++NA+I+G++  G   ++++L+   +++E ++P 
Sbjct: 86  LSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPT 145

Query: 299 SITFVALLLACNHAGLVDLG----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            IT  A+++  +      LG     Q        Y     P     +VD+  + G + +A
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSP-----LVDMYAKMGLIRDA 200

Query: 355 VDLIKKMPFKPQPAIFGTLLSA 376
             + ++M  K    ++ TL++ 
Sbjct: 201 RRVFQEMEAK-TVVMYNTLITG 221


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/639 (38%), Positives = 349/639 (54%), Gaps = 82/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N +L  +AK  GKL+DAQ LFDK+ + D  S+N +LS    +    ++ A FD   R+P 
Sbjct: 62  NQLLHLYAK-FGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFD---RMPF 117

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------------- 99
           +D+ S+NT I+GF       ++ +LF  M  +                            
Sbjct: 118 RDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQI 177

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK---- 144
                      N   W+A+   Y +CG++++A  LF     K++V+W  MISGY K    
Sbjct: 178 HGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQP 237

Query: 145 -------------------------------FGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                                           G+VD A ++F E   K++V W AM+ GY
Sbjct: 238 EKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N   ED L L   M+   I P++ +LSSV+  C+ L+SL  G+ VH     + L  + 
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + LI MY KCG ++DA  +F  +  ++VV+WNAMI G AQ+G  + AL LF+ M  +
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
             KPD++TF+ +L AC H   ++ G +YFDS+ N +G+    DHY CMV+LLGR G++ +
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           AV LIK M   P   I+ TLLS C     +  AE AA +LF L+P  A   Y+ L+N+YA
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVP-YIMLSNMYA 536

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +M +W DVA +R  MK  NV K  G+SWIE+   VH F S DR HPE   I+EKL  L  
Sbjct: 537 SMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIG 596

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCG 532
           +++  G+ P+    LH VGE+ K + + FHSEKLA+AFGLIK P G +PIR+ KN+R+C 
Sbjct: 597 KLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICN 656

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K+ S I  R+II+RD+ RFHHF  G CSC D W
Sbjct: 657 DCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/580 (40%), Positives = 356/580 (61%), Gaps = 16/580 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M  +  + W +++ G+AK +  L+ A+  FD +P+  VVS+N MLS    N  +++V+  
Sbjct: 189 MPERNVITWTAMVTGYAKVK-DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRL 247

Query: 59  FDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           FD      I+ D  +W T+IS    + +   A  L   + +K    N    +A++  Y +
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAK 307

Query: 114 CGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           CG +  A  +F ++   ++ V W AMIS Y + G +D A +LF+ MP +N+VTWN+MIAG
Sbjct: 308 CGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAG 367

Query: 173 YVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           Y +N  +   ++L + MI    + P+  ++ SV+  C HL +L+LG  V + + ++ +  
Sbjct: 368 YAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKL 427

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
             +    +I MY +CG +EDA ++F E+  +DVV++N +ISG+A HG G +A+ L   MK
Sbjct: 428 SISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK 487

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           + G++PD +TF+ +L AC+HAGL++ G + F+S + D  I    DHY CMVDLLGR G+L
Sbjct: 488 EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES-IKDPAI----DHYACMVDLLGRVGEL 542

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            +A   +++MP +P   ++G+LL+A R+HK+++L E AA  LF L P N+ G ++ L+NI
Sbjct: 543 EDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNS-GNFILLSNI 601

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA+  +W DV RIR +MK+  V K  G+SW+E G  +H+F   DR H     I++ L EL
Sbjct: 602 YASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIEL 661

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            K+M+ AGY+ D    L  V EE KE+++  HSEKLAI + L+    G  IRV KNLRVC
Sbjct: 662 RKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVC 721

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH A K IS +E R IIVRD  RFH F DG CSC DYW
Sbjct: 722 WDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 174/342 (50%), Gaps = 37/342 (10%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           N +I  + +   +  AR +F  +P  E+    W+AM+SGY +     +A  LF V P ++
Sbjct: 134 NAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERN 193

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V+ WTAM++GY K   ++ A + FD MP +++V+WNAM++GY +N  AE+ L+L   M+ 
Sbjct: 194 VITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVN 253

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----- 246
            GI P+ ++  +V+  CS      L   + + + +  +  +    T L+ MY KC     
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGA 313

Query: 247 ---------------------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
                                      G+L+ A +LF  +  ++VVTWN+MI+GYAQ+G+
Sbjct: 314 ARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQ 373

Query: 280 GEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
              A+ LF +M   + + PD +T V+++ AC H G ++LG  +    + +  I      +
Sbjct: 374 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGH 432

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             M+ +  R G + +A  + ++M  +   + + TL+S    H
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAH 473



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 122/313 (38%), Gaps = 80/313 (25%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM---MIGLGIRPNASSLSSVLLGCSH 210
           LF+     N+  + +M+  Y   S  +D  K++ M   M G G+RP+A  +  +L+    
Sbjct: 56  LFNSTLNPNVFVFTSMLRFY---SHLQDHAKVVLMFEHMQGCGVRPDAF-VYPILIK--- 108

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI---QRK----- 262
            S+   G   H  V K     D      +I MY + G +  A K+F EI   +RK     
Sbjct: 109 -SAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWN 167

Query: 263 -------------------------DVVTW------------------------------ 267
                                    +V+TW                              
Sbjct: 168 AMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS 227

Query: 268 -NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
            NAM+SGYAQ+G  E+ LRLFD+M + G++PD  T+V ++ AC+  G   L      ++ 
Sbjct: 228 WNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL- 286

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           +   I       T ++D+  + G +  A  +  ++        +  ++SA      LD  
Sbjct: 287 HQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD-- 344

Query: 387 EFAAMNLFNLNPA 399
             +A  LFN  P 
Sbjct: 345 --SARELFNTMPG 355


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/605 (39%), Positives = 352/605 (58%), Gaps = 46/605 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  G LK A+ +FD++   +  S+N M+S + +N   V  A   F+ L  +D
Sbjct: 146 NSLLNMYAKT-GDLKMAKVVFDRMKLRNTSSWNAMIS-LHMNCGRVDLALAQFELLSERD 203

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS------------------- 103
             SWN+MI+G  Q     +A   F ++       P++ S++                   
Sbjct: 204 IVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIH 263

Query: 104 --------------WSAMISGYIECGQLDKAVELFKVAPVKS--VVAWTAMISGYMKFGK 147
                          +A+IS Y + G ++ A  + + + +    V+A+TA+++GY+K G 
Sbjct: 264 GYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGD 323

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A ++F+ +   ++V W AMI GYV+N    D +++ + M+  G RPN+ +L+++L  
Sbjct: 324 ITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSA 383

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVT 266
            S ++SL  GKQ+H    +S      +    L +MY K G +  A K+F L  Q +D V+
Sbjct: 384 SSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVS 443

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W +MI   AQHG GE+A+ LF++M   G+KPD IT+V +L AC H GLV+ G  YFD M 
Sbjct: 444 WTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMK 503

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           N + I     HY CMVDL GRAG L EA   ++ MP +P    +G+LLS+C+V+K +DLA
Sbjct: 504 NVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLA 563

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           + AA  L  + P N+ G Y  LAN+Y++  KWDD A+IR  MK   V K  G SW+++  
Sbjct: 564 KVAAERLLLIEPNNS-GAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQN 622

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
             H F   D +HP+   I++ + ++ K +K  G+ PD E  LH +  EVK+Q+L +HSEK
Sbjct: 623 KTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEK 682

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LAIAFG+I  P  T +R+ KNLRVC DCH A K+IS +  REIIVRD TRFHHFKDG+CS
Sbjct: 683 LAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCS 742

Query: 567 CGDYW 571
           C DYW
Sbjct: 743 CKDYW 747



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 180/427 (42%), Gaps = 113/427 (26%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSY------------------- 41
           M VKTT +WN++L+G+AKQ GKL+ A ++FD IP  D VS+                   
Sbjct: 36  MPVKTTFSWNTILSGYAKQ-GKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKI 94

Query: 42  -----------------NIMLSCILLNSDDV-------VAAFDFFQRLPIKDTASWNTMI 77
                            N++ SC    S  +       V        +P+      N+++
Sbjct: 95  FVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVA-----NSLL 149

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           + + +  ++  A+ +F  M  +N+ SW+AMIS ++ CG++D A+  F++   + +V+W +
Sbjct: 150 NMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNS 209

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           MI+G  + G  + A + F                                ++    ++P+
Sbjct: 210 MIAGCNQHGFDNEALQFFSS------------------------------ILKDTSLKPD 239

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-------------------------- 231
             SL+S L  C++L  L  GKQ+H  + ++                              
Sbjct: 240 RFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIE 299

Query: 232 -------DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                  D  A T L++ Y K GD+  A ++F  ++  DVV W AMI GY Q+G    A+
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAI 359

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F  M  EG +P+S T  A+L A +    ++ G Q   S +   G A  P     +  +
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRS-GEALSPSVGNALTTM 418

Query: 345 LGRAGKL 351
             +AG +
Sbjct: 419 YAKAGSI 425



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 126/229 (55%), Gaps = 6/229 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G    A +LF   PVK+  +W  ++SGY K GK++ A ++FD +P ++ V+W  +I
Sbjct: 20  YAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTII 79

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            GY +    ED +K+   M+   + P   +L++VL  C+   S  +GK+VH  V K  L 
Sbjct: 80  VGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLH 139

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                   L++MY K GDL+ A  +F  ++ ++  +WNAMIS +   G+ + AL  F+ +
Sbjct: 140 ACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELL 199

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
            +     D +++ +++  CN  G  +  +Q+F S++ D  +  KPD ++
Sbjct: 200 SER----DIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSL--KPDRFS 242


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/561 (41%), Positives = 337/561 (60%), Gaps = 13/561 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-----IKDTASWNT 75
           G +  A+ LF +I +PD+   N ++      S + + A  F+  +        D  ++  
Sbjct: 83  GSIPYARFLFYRIRKPDIFIANTLIRAYAF-SPNPIDAVVFYSEMTESSVVFPDVHTFPL 141

Query: 76  MISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++    +  ++     +      L    + SVS + ++  Y  CG ++ A  +F   P  
Sbjct: 142 LLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVS-NFLVQMYASCGLIESAGLVFDRTPEC 200

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
              +W  MI GY+K G    A ++F+ MP +++V+W+ MI GYV+ S  ++GL L + M+
Sbjct: 201 DGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMM 260

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G  I PN S L + L  C+HL +++ G+ + + + +  +       T LI MY KCG +E
Sbjct: 261 GEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVE 320

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A ++F +++ K+V+ W+AMI+G A +G+G+ AL LF +M+ +G+KP+ +TF+ +L AC+
Sbjct: 321 RALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACS 380

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+ LVD G  +F SM + YG+     H+ CMVDL GRAG L +A  +IK MPFKP  AI+
Sbjct: 381 HSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIW 440

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G LL+ACR+H   +L E     L  L+P N  G YV L+NIYAA  +WD VA +R  M+E
Sbjct: 441 GALLNACRIHGDTELGEQVGKRLLELDP-NHGGRYVLLSNIYAACGRWDRVAELRRMMRE 499

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             V K PG S+I++G  +HEF +GD  HP+L  I+ KL E+ + +K AGY PD    L  
Sbjct: 500 RQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLD 559

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           + EE KE  L  HSEKLAIAFGLIK   GT IR+ KNLRVC DCH ATK IS I  REII
Sbjct: 560 MDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREII 619

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD  RFHHF+DG+CSC D+W
Sbjct: 620 VRDRCRFHHFRDGSCSCMDFW 640



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           NV+ TV   + L     + G ++ A E+F K+ + +V++++ M++ + +N      A + 
Sbjct: 298 NVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQG-KDALNL 356

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARD----LFLAMP-----EKNSVSWSAMISGYI 112
           F ++ ++          G +   + +K  D     F +M      + N+     M+  Y 
Sbjct: 357 FSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYG 416

Query: 113 ECGQLDKAVELFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKL 154
             G LD+A  + K  P K   A W A+++     G  +L E++
Sbjct: 417 RAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQV 459


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/535 (43%), Positives = 325/535 (60%), Gaps = 39/535 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N++I+ + +      +R +F  MP+KN+VSWSA+I   ++  +  +   LF+        
Sbjct: 49  NSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSR 108

Query: 126 ---------VAPVKS----------VV---------AWTAMISGYMKFGKVDLAEKLFDE 157
                    +A V+S          VV           +A    + + G+V++A KLFD 
Sbjct: 109 PSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDG 168

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           + +K+LVTW   I  YV+     + L LL+ M+  GI P+A +L  V+  CS L+S QL 
Sbjct: 169 IMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLA 228

Query: 218 KQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
             VH ++          A+ T LI +Y KCG L  A K+F  +Q ++++TW+AMISGY  
Sbjct: 229 HIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGM 288

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG G +AL LFD+MK   +KPD ITFV++L AC+H+GLV  G + F+SM  D+G+  +P+
Sbjct: 289 HGWGREALNLFDQMK-ASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPE 347

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY CMVD+LGRAGKL EA D I++MP +P  A++G LL ACR+H  +DLAE  A  LF+L
Sbjct: 348 HYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDL 407

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
           +P NA G YV L NIY    K  +   IR  MK   V K+ GYS IE+   ++ F +GDR
Sbjct: 408 DPHNA-GRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDR 466

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
            HP+   I+ +L+ L  R++  GY PD+ F LH V EE KE +L  HSEKLAI FGL+ +
Sbjct: 467 SHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNL 526

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             G+ IR+ KNLRVCGDCH ATK+IS +  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 527 GPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+ LGI+P+  +   ++  CS L   + G ++HQ V K            LI+MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            E + ++F E+  K+ V+W+A+I    Q  + ++   LF +M  EG +P
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP 109


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/544 (41%), Positives = 335/544 (61%), Gaps = 17/544 (3%)

Query: 42  NIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           +++ S IL+N      + DF    F  +P +   SWNTMI    Q     +A DL L M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157

Query: 98  EKNSVSWSAMISGYI----------ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
            + +      IS  +          EC QL  A  + K A   +V   TA++  Y K G 
Sbjct: 158 REGTPFSEFTISSVLCACAAKCALSEC-QLLHAFAI-KAAMDLNVFVATALLDVYAKCGL 215

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A  +F+ MP +++VTW++M AGYV+N   E  L L R     G++ +   +SSV+  
Sbjct: 216 MKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICA 275

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L+++  GKQ++ L+ KS  C +    + LI MY KCG +E++ K+F ++++++VV W
Sbjct: 276 CAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLW 335

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NAMISG ++H +  + + LF+KM+  G+ P+ +TFV++L AC H GLV  G +YFD M  
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTK 395

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           ++ +A    HY+CMVD L RAG++ EA DLI K+PF    +++G+LL++CR H  L+LAE
Sbjct: 396 EHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAE 455

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
            AA  LF++ P N +G Y+ L+N+YAA  KWD+VA++R  +KE++V K  G SWIE+   
Sbjct: 456 VAAKKLFDIEPHN-SGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDK 514

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           VH F  G+R HP++V I+ KL E+   ++  GY  + +  LH VGE +K++LL  HSEKL
Sbjct: 515 VHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKL 574

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           A   GL+ +P   PIR+ KNLR+CGDCH   K  S    R++IVRDT RFHHFK+G CSC
Sbjct: 575 AFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSC 634

Query: 568 GDYW 571
           GD+W
Sbjct: 635 GDFW 638



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + S +  +L  C+    L  GK  H  +    L  D      LI+MY KCG ++ A ++F
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLV 315
            E+  + +V+WN MI    Q+G+  +AL L  +M+ EG      T  ++L AC     L 
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALS 182

Query: 316 DLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMP 362
           +        +++ + I A  D      T ++D+  + G + +AV + + MP
Sbjct: 183 EC------QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/471 (44%), Positives = 311/471 (66%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y++CG +  A +LF    V+ + +W A+I+GYMK G++ +AE LF+ M  +N+V
Sbjct: 220 ASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIV 279

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +W AMI+GY +N +AE  L L   M+  G  ++PN  ++ SVL  C+  ++L+ G+++H 
Sbjct: 280 SWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 339

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDA--CKLFLEIQRKDVVTWNAMISGYAQHGKG 280
                 L  +++  T L  MY KC  L +A  C   +    K+++ WN MI+ YA HG G
Sbjct: 340 FANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCG 399

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A+ +F+ M   G++PD++TF+ LL  C+H+GL+D G+ +F+ M   + +  + +HY C
Sbjct: 400 VEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYAC 459

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           +VDLLGRAG+LVEA +LI +MP +  P+++G LL+ACR H+ L++AE AA  LF L P N
Sbjct: 460 VVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDN 519

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
           + G YV L+N+YA    W++V ++R  +K   + K PG SWIE+    H F   D+ HP+
Sbjct: 520 S-GNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQ 578

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I++ L+ L +++K+AGY+PD  F LH + EE KE  L  HSEKLAIAFGL+    G 
Sbjct: 579 AKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGV 638

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +RV KNLR+CGDCH ATK+IS I +REIIVRD  RFH FKDG+CSCGDYW
Sbjct: 639 VLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 126/281 (44%), Gaps = 40/281 (14%)

Query: 111 YIECGQLDKA-VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           +I+ GQ   A + L  + P   + A   M++ Y   G +D A  +FD +   + + +N++
Sbjct: 92  FIKLGQQAHAQIVLHGLQPNAFLAA--KMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSI 149

Query: 170 IAGYVENSWAEDGLKLLRM---MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           I  Y  +         L     M  LG+  +  +L  VL  C+ LS + +G+ VH    +
Sbjct: 150 IRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR 209

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA----------------- 269
             L  D      LI MY KCG + DA KLF ++  +D+ +WNA                 
Sbjct: 210 VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDL 269

Query: 270 --------------MISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACNHAG 313
                         MISGY Q+G  E+AL LFD+M  +G  MKP+ +T V++L AC  + 
Sbjct: 270 FERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSA 329

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            ++ G +  D   N  G+       T +  +  +   LVEA
Sbjct: 330 ALERGRRIHD-FANGIGLHLNSSVQTALAGMYAKCYSLVEA 369



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 15/210 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA++LFDK+   D+ S+N +++   +   ++  A D F+R+  ++  SW  MISG+
Sbjct: 230 GVIGDARKLFDKMIVRDMASWNALIAG-YMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 288

Query: 81  VQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQ---LDKAVELFKVA-----PV 129
            Q     +A  LF  M +  S    +W  ++S    C Q   L++   +   A      +
Sbjct: 289 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 348

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKLLR 187
            S V  TA+   Y K   +  A   FD +    KNL+ WN MI  Y  +    + + +  
Sbjct: 349 NSSVQ-TALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
            M+  G++P+A +   +L GCSH   +  G
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 437



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 117/279 (41%), Gaps = 22/279 (7%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+ SS + +    +  + ++LG+Q H  +    L  +      +++MY   GDL+ A  +
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 256 FLEIQRKDVVTWNAMISGYAQHG---KGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
           F  I     + +N++I  Y +HG        L  + +M   G+  D+ T   +L +C   
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSC--- 191

Query: 313 GLVDLGIQYFDSMVNDYG--IAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
              DL        V+  G  +  + D Y    ++D+  + G + +A  L  KM  +   A
Sbjct: 192 --ADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDM-A 248

Query: 369 IFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANAA-GCYVQLANIYAAMKKWDDVARIR 425
            +  L++       + +AE  F  M   N+    A    Y Q      A+  +D++ +  
Sbjct: 249 SWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDG 308

Query: 426 LSMKENNVV---KMPG---YSWIEVGTVVHEFRSGDRVH 458
             MK N V     +P     + +E G  +H+F +G  +H
Sbjct: 309 SEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/518 (44%), Positives = 318/518 (61%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI--SGYIECG 115
           F  LP KD  +WN +ISG+ Q     +A  LF+ M ++    N  + S ++  +  ++  
Sbjct: 417 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 476

Query: 116 QLDKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            + + V    V       +    ++I  Y K   V+ AE++F+E    +LV++ +MI  Y
Sbjct: 477 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 536

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    E+ LKL   M  + ++P+    SS+L  C++LS+ + GKQ+H  + K     D 
Sbjct: 537 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDI 596

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            A   L++MY KCG ++DA + F E+  + +V+W+AMI G AQHG G +AL+LF++M  E
Sbjct: 597 FAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKE 656

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+ P+ IT V++L ACNHAGLV     YF+SM   +G     +HY CM+DLLGRAGK+ E
Sbjct: 657 GVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINE 716

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           AV+L+ KMPF+   +++G LL A R+HK ++L   AA  LF L P   +G +V LANIYA
Sbjct: 717 AVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP-EKSGTHVLLANIYA 775

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +  KW++VA +R  M+++ V K PG SWIEV   V+ F  GDR H     I+ KL EL  
Sbjct: 776 SAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSD 835

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
            M  AGYVP +E  LH V +  KE LL  HSEKLA+AFGLI  P G PIRV KNLRVC D
Sbjct: 836 LMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVD 895

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A KYI  I  REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 896 CHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 39/297 (13%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY----------------- 111
           D +  N +I+ + + +N   AR L     E + VSWSA+ISGY                 
Sbjct: 90  DPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 112 ---IECGQLD-----KAVELFKVAPVKSVVAWTAMISGY-----------MKFGKVDL-- 150
              ++C +       KA  + K   +   V    ++SG+           + + K D   
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 151 -AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            +++LFDE+P +N+V+WNA+ + YV+  +  + + L   M+  GI+PN  SLSS++  C+
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L     GK +H  + K     D  +   L+ MY K GDL DA  +F +I++ D+V+WNA
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +I+G   H   E+AL L  +MK  G+ P+  T  + L AC   GL +LG Q   S++
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLM 386



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 189/426 (44%), Gaps = 47/426 (11%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           D+ + +   F  +P ++  SWN + S +VQ     +A  LF  M     + N  S S+M+
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 109 SGYIECGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +    C  L  +         L K+       +  A++  Y K G +  A  +F+++   
Sbjct: 266 NA---CTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++V+WNA+IAG V +   E  L+LL  M   GI PN  +LSS L  C+ +   +LG+Q+H
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH 382

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             + K  +  D      L+ MY KC  LEDA   F  +  KD++ WNA+ISGY+Q+ +  
Sbjct: 383 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 442

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLA---------CN--HAGLVDLG----IQYFDSMV 326
           +AL LF +M  EG+  +  T   +L +         C   H   V  G    I   +S++
Sbjct: 443 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLI 502

Query: 327 NDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPA 368
           + YG  +  +                +T M+    + G+  EA+ L   ++ M  KP   
Sbjct: 503 DSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRF 562

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           +  +LL+AC      +  +   +++              L N+YA     DD  R    +
Sbjct: 563 VCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSEL 622

Query: 429 KENNVV 434
            E  +V
Sbjct: 623 TERGIV 628



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 144/334 (43%), Gaps = 73/334 (21%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P + S S +L  C    SL+ G Q+H  + KS L  D +    LI++Y KC +   A KL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
             E    D+V+W+A+ISGYAQ+G G  AL  F +M   G+K +  TF ++L AC+    +
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 316 DLGIQYFDSMV-----NDYGIA-------AKPDH----------------------YTCM 341
            +G Q    +V      D  +A       AK D                       ++C 
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 342 V--DLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC---RVHKRLDLAEFAAMNL 393
           V  D  G      EAV L  +M     KP      ++++AC   R   R  +     + L
Sbjct: 234 VQIDFCG------EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKL 287

Query: 394 -FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV--GTVVHE 450
            ++ +P +A      L ++YA +    D   +   +K+ ++V     SW  V  G V+HE
Sbjct: 288 GYDWDPFSANA----LVDMYAKVGDLADAISVFEKIKQPDIV-----SWNAVIAGCVLHE 338

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
                         HE+  EL  +MK +G  P++
Sbjct: 339 H-------------HEQALELLGQMKRSGICPNI 359


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 359/621 (57%), Gaps = 55/621 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M  K  V +N++L G++K+ G   DA  LF K+            + +L   +  DD+  
Sbjct: 200 MAEKDNVTFNALLTGYSKE-GFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDI-- 256

Query: 58  AFDFFQRLP---IKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
             +F Q++    +K    WN  ++      + +   + +AR LF  MPE + +S++ +I+
Sbjct: 257 --EFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLIT 314

Query: 110 GYIECGQLDKAVELFK---------------------------------------VAPVK 130
                G++++++ELF+                                          + 
Sbjct: 315 CCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAIS 374

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V+   +++  Y K  K   A ++F ++  ++ V W A+I+GYV+    EDGLKL   M 
Sbjct: 375 EVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMH 434

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              I  ++++ +S+L  C++L+SL LGKQ+H  + +S    +  + + L+ MY KCG ++
Sbjct: 435 RAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIK 494

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A ++F E+  ++ V+WNA+IS YAQ+G G  ALR F++M   G++P+S++F+++L AC+
Sbjct: 495 EALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACS 554

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H GLV+ G+QYF+SM   Y +  + +HY  MVD+L R+G+  EA  L+ +MPF+P   ++
Sbjct: 555 HCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMW 614

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
            ++L++CR+HK  +LA  AA  LFN+     A  YV ++NIYAA  +WD V +++ +++E
Sbjct: 615 SSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRE 674

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K+P YSW+E+    H F + D  HP+   I  KL ELEK+M+  GY PD   ALH 
Sbjct: 675 RGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHN 734

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V EEVK + L +HSE++AIAF LI  P G+PI V KNLR C DCH A K IS I  REI 
Sbjct: 735 VDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREIT 794

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD++RFHHF DG+CSC DYW
Sbjct: 795 VRDSSRFHHFTDGSCSCKDYW 815



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           + N+  ++  +  +++ G L  A +LF   P K+V++   MI GY+K G +  A  LFD 
Sbjct: 39  DPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDS 98

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M  +++VTW  +I GY +++   +   L   M   G+ P+  +L+++L G +   S+   
Sbjct: 99  MVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEV 158

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            QVH  V K            L+  YCK   L  AC LF  +  KD VT+NA+++GY++ 
Sbjct: 159 AQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKE 218

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G    A+ LF KM+D G +P   TF A+L A      ++ G Q   S V           
Sbjct: 219 GFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFG-QQVHSFVVKCNFVWNVFV 277

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC----RVHKRLDL 385
              ++D   +  ++VEA  L  +MP +     +  L++ C    RV + L+L
Sbjct: 278 ANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVEESLEL 328



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 153/310 (49%), Gaps = 9/310 (2%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           QRG L  A++LFD++P  +V+S N M+    L S ++  A   F  +  +   +W  +I 
Sbjct: 54  QRGDLGAARKLFDEMPHKNVISTNTMIMG-YLKSGNLSTARSLFDSMVQRSVVTWTMLIG 112

Query: 79  GFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF----KVAPVK 130
           G+ Q     +A +LF  M       + ++ + ++SG+ E   +++  ++     KV    
Sbjct: 113 GYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDS 172

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +++   +++  Y K   + LA  LF  M  K+ VT+NA++ GY +  +  D + L   M 
Sbjct: 173 TLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQ 232

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            LG RP+  + ++VL     +  ++ G+QVH  V K     +      L+  Y K   + 
Sbjct: 233 DLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIV 292

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A KLF E+   D +++N +I+  A +G+ E++L LF +++          F  LL    
Sbjct: 293 EARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAA 352

Query: 311 HAGLVDLGIQ 320
           ++  +++G Q
Sbjct: 353 NSLNLEMGRQ 362


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/582 (39%), Positives = 349/582 (59%), Gaps = 14/582 (2%)

Query: 2    NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
            N+   +   + L     + G+L  A+E+F+++ + +  S+N M+     N +    A   
Sbjct: 509  NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE-TQEALRL 567

Query: 62   FQRLPIK----DTASWNTMISGFVQKKNMAKARDL--FLAMP--EKNSVSWSAMISGYIE 113
            F+++ +     D  S ++M+S  V   +  K R+L  F+     E+  +    ++  Y +
Sbjct: 568  FKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAK 627

Query: 114  CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            CG +D A +++     K V+    M+S ++  G+ + A+ LFD+M  +N   WN+++AGY
Sbjct: 628  CGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGY 687

Query: 174  VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
                  ++       M+   I  +  ++ +++  CS L +L+ G Q+H L+ K      +
Sbjct: 688  ANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCS 747

Query: 234  TAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
              L T L+ MY KCG +  A  +F  +  K++V+WNAMISGY++HG  ++AL L+++M  
Sbjct: 748  VVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPK 807

Query: 293  EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            +GM P+ +TF+A+L AC+H GLV+ G++ F SM  DY I AK +HYTCMVDLLGRAG+L 
Sbjct: 808  KGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLE 867

Query: 353  EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            +A + ++KMP +P+ + +G LL ACRVHK +D+   AA  LF L+P N  G YV ++NIY
Sbjct: 868  DAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQN-PGPYVIMSNIY 926

Query: 413  AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
            AA  +W +V  IR  MK   V K PG SWIE+ + +  F +G + HP+   I+  L+ L 
Sbjct: 927  AAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLT 986

Query: 473  KRMKLAGYVPDLEFALHAVGE---EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
             + K  GY+PD  F L  V +   E +E+ LL HSE+LA++ GLI +P  + IRVFKNLR
Sbjct: 987  LQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLR 1046

Query: 530  VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +CGDCH ATK+IS I  R II RDT RFHHF++G CSCGDYW
Sbjct: 1047 ICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 167/338 (49%), Gaps = 48/338 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVA 57
           M  +  V WNS+++  A Q G   DA  LF ++ +    S    L  IL+ S    D+  
Sbjct: 337 MGERNQVTWNSIISAEA-QFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGK 395

Query: 58  AFDF----FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +      + L   D    + ++  + +   + +A  +F ++ E+N VS++A+++GY++
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455

Query: 114 CGQLDKAVELFK-------VAP---------------------------------VKSVV 133
            G+ ++A+EL+        + P                                  K+++
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 515

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             T ++  Y + G+++ A+++F+ M  +N  +WN+MI GY +N   ++ L+L + M   G
Sbjct: 516 VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 575

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+P+  SLSS+L  C  LS  Q G+++H  + ++ + ++      L+ MY KCG ++ A 
Sbjct: 576 IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 635

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           K++ +  +KDV+  N M+S +   G+   A  LFD+M+
Sbjct: 636 KVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQME 673



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 216/510 (42%), Gaps = 63/510 (12%)

Query: 19  QRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           QRGK    Q + +   P   +++  +ML       DD+  A   F+ +P ++  +WNTMI
Sbjct: 88  QRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI 147

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDK--AVELFKVAPVKS--- 131
             + +  +  +   L+  M    + S        I+ C  ++    V   + + VK+   
Sbjct: 148 LAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLN 207

Query: 132 --VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
             +    A++ GY +FG +D A    DE+   ++VTWNA+IAGYV+    E+   +   M
Sbjct: 208 CNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRM 267

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           + +G+ P+  + +S L  C  L S   GKQVH  +       DT     LI MY KC D 
Sbjct: 268 LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDE 327

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E   K+F E+  ++ VTWN++IS  AQ G    AL LF +M++ G K +     ++L+A 
Sbjct: 328 ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS 387

Query: 310 NHAGLVDLG-----------------IQYFDSMVNDY---GIAAKPDH------------ 337
             AGL D+G                 I    ++V+ Y   G+  +               
Sbjct: 388 --AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS 445

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
           Y  ++    + GK  EA++L   M      +P    F TLL+ C   +  +       +L
Sbjct: 446 YNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHL 505

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
              N         +L ++Y+   + +    I   M E N      YSW    +++  ++ 
Sbjct: 506 IRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERN-----AYSW---NSMIEGYQQ 557

Query: 454 GDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
                  L         L K+M+L G  PD
Sbjct: 558 NGETQEAL--------RLFKQMQLNGIKPD 579



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 62/359 (17%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDD----- 54
           + V WN+V+AG+ K     ++A  +FD++ +    PD  ++   L  C  L S D     
Sbjct: 240 SVVTWNAVIAGYVKIL-SWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQV 298

Query: 55  ----VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
               +   F         DT   N +I  + +  +      +F  M E+N V+W+++IS 
Sbjct: 299 HSKLIACGFK-------GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISA 351

Query: 111 YIECGQLDKAVELF---KVAPVKS------------------------------------ 131
             + G  + A+ LF   + +  KS                                    
Sbjct: 352 EAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSD 411

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMI 190
           ++  +A++  Y K G V+ A ++F  +  +N V++NA++AGYV+   AE+ L+L   M  
Sbjct: 412 IILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQS 471

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             GI+P+  + +++L  C++  +   G+Q+H  + ++ + K+    T L+ MY +CG L 
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 531

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            A ++F  +  ++  +WN+MI GY Q+G+ ++ALRLF +M+  G+KPD  +  ++L +C
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC---KLFLE 258
           SS++  C   +S Q GK +H  +  +    D   +T ++ +Y + G L+D C   KLF E
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL- 317
           +  +++  WN MI  YA+     + LRL+ +M+  G   D  TF +++ AC    + D+ 
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC--IAMEDMG 192

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           G++   S V   G+         +VD   R G + +AV
Sbjct: 193 GVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAV 230


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 360/612 (58%), Gaps = 49/612 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +T  +WNS+++G  K  G   +A  LF+ +P  +++++  M++       D+ +A  
Sbjct: 156 MAERTLADWNSMISGCWKS-GNETEAVVLFNMMPARNIITWTSMVTG-YAKMGDLESARR 213

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--------------------- 99
           +F  +P +   SWN M S + QK+   +A +LF  M E+                     
Sbjct: 214 YFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGD 273

Query: 100 ------------------NSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMIS 140
                             NS   +A++  + + G L+ A  +F ++   ++ V W  MIS
Sbjct: 274 PTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMIS 333

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG-LGIRPNAS 199
            Y + GK+ LA +LFD MP +++V+WN+MIAGY +N  +   ++L + MI  + I+P+  
Sbjct: 334 AYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEV 393

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +++SVL  C H+ +L+L   V  +V +  +    +    LI MY KCG + DA ++F  +
Sbjct: 394 TIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             +DVV++N +ISG+A +G G++A++L   M++EG++PD +T++ +L AC+HAGL++ G 
Sbjct: 454 GTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGK 513

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
             F S+      A   DHY CMVDLLGRAG+L EA  LI+ MP KP   ++G+LL+A R+
Sbjct: 514 NVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRI 568

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           HKR+ L E AA  LF L P N  G YV L+NIYA+  +W+DV R+R  MK+  + K  G 
Sbjct: 569 HKRVGLGELAASKLFELEPQNL-GNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGM 627

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SW+E    VH+F  GDR H +   I++ L ELE++MK  G+V D   AL  V EE KE++
Sbjct: 628 SWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEM 687

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L  HSEKLAI F L+   +GT IRV KNLR+C DCH A K IS +E REI+VRD  RFH 
Sbjct: 688 LGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHC 747

Query: 560 FKDGTCSCGDYW 571
           F +G CSC DYW
Sbjct: 748 FSEGMCSCHDYW 759



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 186/376 (49%), Gaps = 39/376 (10%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           PQP V  Y I L+     S ++  A+   +   I D    N ++  + +   +  AR+LF
Sbjct: 98  PQPFVYIYLIKLAG---KSGNLFHAY-VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLF 153

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             M E+    W++MISG  + G   +AV LF + P ++++ WT+M++GY K G ++ A +
Sbjct: 154 EQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARR 213

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            FDEMP +++V+WNAM + Y +    ++ L L   M+  GI P+ ++    +  CS +  
Sbjct: 214 YFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGD 273

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--QR---------- 261
             L   + +++ +  +  ++   T L+ M+ K G+LE A  +F E+  QR          
Sbjct: 274 PTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMIS 333

Query: 262 --------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSI 300
                               +DVV+WN+MI+GYAQ+G+   ++ LF +M     ++PD +
Sbjct: 334 AYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEV 393

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T  ++L AC H G + L     D +V +  I      +  ++ +  + G + +A  + + 
Sbjct: 394 TIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQT 452

Query: 361 MPFKPQPAIFGTLLSA 376
           M  +   + F TL+S 
Sbjct: 453 MGTRDVVS-FNTLISG 467


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/526 (43%), Positives = 313/526 (59%), Gaps = 9/526 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMIS 109
           DV  A   F+R+   D  ++N MISGF        +    R+L  +    +S +   +I 
Sbjct: 259 DVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIP 318

Query: 110 GYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            +   G L  A  +     K   + +    TA  + Y K  ++DLA  LFDE P K +V 
Sbjct: 319 LHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVA 378

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNAMI+GY +N   E  + L + M+     PNA +++++L  C+ L SL  GK VH L+ 
Sbjct: 379 WNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIK 438

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
              L  +    T L+ MY KCG++ +A +LF  +  K+ VTWN MI GY  HG G +AL+
Sbjct: 439 SENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALK 498

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           L+++M   G  P ++TF+++L AC+HAGLV  G + F +MVN Y I    +HY CMVD+L
Sbjct: 499 LYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDIL 558

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR+G+L +A++ IKKMP +P PA++GTLL AC +HK  D+A  A+  LF L+P  + G Y
Sbjct: 559 GRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPG-SVGYY 617

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L+NIY+  + +   A IR  +K+  + K PG + IEV    H F SGDR H     I+
Sbjct: 618 VLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIY 677

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
            KL++L  +M+  GY  +   ALH V EE KE  +  HSEKLAIAFGLI    G  IR+ 
Sbjct: 678 AKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRII 737

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLRVC DCH ATK+IS I +R I+VRD  RFHHFKDG CSCGDYW
Sbjct: 738 KNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 193/453 (42%), Gaps = 77/453 (16%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
           + A+ LF  +P+PD+  +N+++    LN D   ++   +  L      S +     F   
Sbjct: 61  RHARALFFSVPKPDIFLFNVLVRGFSLN-DSPSSSISLYTHLRRNTNLSPDNFTYAFAVA 119

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
              A + D  L +   +S+     I GY                   +V   +A++  Y 
Sbjct: 120 ---ACSNDKHLMLLHAHSI-----IDGY-----------------GSNVFVGSALVDLYC 154

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           KF +V  A K+FD MP ++ V WN MI G V+N   +D ++L R M+  G+R ++S++++
Sbjct: 155 KFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTA 214

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL   + L  L++G  +  L  K         LT LIS+Y KCGD+  A  LF  I R D
Sbjct: 215 VLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPD 274

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL----------LACNHAG 313
           ++ +NAMISG+  +G  E +++LF ++   G +  S T V L+          LAC+  G
Sbjct: 275 LIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHG 334

Query: 314 L-------------------------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
                                     +DL    FD       +A     +  M+    + 
Sbjct: 335 FCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVA-----WNAMISGYTQN 389

Query: 349 GKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA--MNLFNLNPANAAG 403
           G    A+ L K+M    F P      T+LSAC     L   ++    +   NL P     
Sbjct: 390 GSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEP----N 445

Query: 404 CYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 434
            YV   L ++YA      +  ++  SM E N V
Sbjct: 446 IYVSTALVDMYAKCGNISEAWQLFDSMSEKNTV 478



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 117/266 (43%), Gaps = 43/266 (16%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
           +++  A   F   P K   +WN MISG+ Q  +   A  LF  M +     N+V+ + ++
Sbjct: 359 NEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTIL 418

Query: 109 SGYIECGQLDKAV---ELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S   + G L        L K   ++ ++   TA++  Y K G +  A +LFD M  KN V
Sbjct: 419 SACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTV 478

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQL 223
           TWN MI GY  + +  + LKL   M+ LG  P+A +  SVL  CSH   +  G+++ H +
Sbjct: 479 TWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNM 538

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K         + PLI  Y        AC                M+    + G+ EKA
Sbjct: 539 VNK-------YRIEPLIEHY--------AC----------------MVDILGRSGQLEKA 567

Query: 284 LRLFDKMKDEGMKPDSITFVALLLAC 309
           L    KM  E   P    +  LL AC
Sbjct: 568 LEFIKKMPVE---PGPAVWGTLLGAC 590


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/638 (36%), Positives = 360/638 (56%), Gaps = 84/638 (13%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           F K RG L  A ++F+K+P+ + V++ +M++  L+       A D F  + +        
Sbjct: 214 FVKGRGDLVSAFKVFEKMPERNAVTWTLMIT-RLMQFGYAGEAIDLFLEMILSGYEPDRF 272

Query: 76  MISGFVQK------------------------------------------KNMAKARDLF 93
            +SG +                                             +M  AR +F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDK-AVELFK------VAPVKSVVAWT---------- 136
             + + N  SW+AMI+GY++ G  D+ A++LF+      V P     + T          
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 137 -----------------------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                                  ++IS Y + G++D A K FD +  KNL+++N +I  Y
Sbjct: 393 RIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAY 452

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N  +E+ L+L   +   G+  +A + +S+L G + + ++  G+Q+H  V KS L  + 
Sbjct: 453 AKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQ 512

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
           +    LISMY +CG++E A ++F +++ ++V++W ++I+G+A+HG   +AL LF KM +E
Sbjct: 513 SVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEE 572

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++P+ +T++A+L AC+H GLV+ G ++F SM  ++G+  + +HY CMVD+LGR+G L E
Sbjct: 573 GVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSE 632

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  I  MP+K    ++ T L ACRVH  L+L + AA  +    P + A  Y+ L+N+YA
Sbjct: 633 AIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAA-YILLSNLYA 691

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +  KWD+V+ IR +MKE N++K  G SW+EV   VH+F  GD  HP+   I+++L+ L  
Sbjct: 692 STSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSV 751

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++K  GYVP+L+F LH V EE KE+LL  HSEK+A+AFGLI      PIRVFKNLR+CGD
Sbjct: 752 KIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGD 811

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A KYIS    REIIVRD  RFHH KDG CSC +YW
Sbjct: 812 CHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 164/339 (48%), Gaps = 13/339 (3%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           Q DV     ++   +    D+V+AF  F+++P ++  +W  MI+  +Q     +A DLFL
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFL 260

Query: 95  AM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV----AWTAMISGYMKF- 145
            M     E +  + S +IS       L    +L   A    +         +I+ Y K  
Sbjct: 261 EMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS 320

Query: 146 --GKVDLAEKLFDEMPTKNLVTWNAMIAGYVE-NSWAEDGLKLLRMMIGLGIRPNASSLS 202
             G +  A K+FD++   N+ +W AMI GYV+   + E+ L L R MI   + PN  + S
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S L  C++L++L++G+QV     K            LISMY + G ++DA K F  +  K
Sbjct: 381 STLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +++++N +I  YA++   E+AL LF++++D+GM   + TF +LL      G +  G Q  
Sbjct: 441 NLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIH 500

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++   G+         ++ +  R G +  A  + + M
Sbjct: 501 ARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 192/428 (44%), Gaps = 59/428 (13%)

Query: 21  GKLKDA----QELFDKIPQPDVVSYNIMLS-CILLNSDDV--VAAFDFFQRLPIKDTASW 73
           G+L  A    + +  +   PD+ +Y++ L  CI   S D+  +      Q     D+ + 
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 74  NTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGY----------------IECGQ 116
           N++IS + +     KA  +F  M   ++ +SWSAM+S +                IE G 
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 117 L---------DKAVELFKVAPVKSVVAWTAMISGYMKF--------------GKVDL--A 151
                      +A    +   V   +    + +GY++               G+ DL  A
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K+F++MP +N VTW  MI   ++  +A + + L   MI  G  P+  +LS V+  C+++
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANM 284

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWN 268
             L LG+Q+H    +  L  D      LI+MY KC   G +  A K+F +I   +V +W 
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 269 AMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           AMI+GY Q G   E+AL LF  M    + P+  TF + L AC +   + +G Q F   V 
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK 404

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
             G ++       ++ +  R+G++ +A      + F+     + T++ A    K L+  E
Sbjct: 405 -LGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDA--YAKNLNSEE 460

Query: 388 FAAMNLFN 395
             A+ LFN
Sbjct: 461 --ALELFN 466



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 4/192 (2%)

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           + N      +  L  M+  G  P+  + S  L  C    S  +G  VH+ + +S L  D+
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 234 TALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             L  LIS+Y KCG  E A  +F L    +D+++W+AM+S +A +  G +AL  F  M +
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL--GRAGK 350
            G  P+   F A   AC+ A  V +G   F  +V    + +       ++D+   GR G 
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGR-GD 220

Query: 351 LVEAVDLIKKMP 362
           LV A  + +KMP
Sbjct: 221 LVSAFKVFEKMP 232



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 140/326 (42%), Gaps = 56/326 (17%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------------ 49
           +W +++ G+ ++ G  ++A +LF  +    V+  +   S  L                  
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401

Query: 50  ------------LNS-----------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNM 86
                        NS           DD   AFD    L  K+  S+NT+I  + +  N 
Sbjct: 402 AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI---LFEKNLISYNTVIDAYAKNLNS 458

Query: 87  AKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV-----AWTA 137
            +A +LF  + ++    ++ ++++++SG    G + K  E      +KS +        A
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG-EQIHARVIKSGLKLNQSVCNA 517

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +IS Y + G ++ A ++F++M  +N+++W ++I G+ ++ +A   L+L   M+  G+RPN
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPN 577

Query: 198 ASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
             +  +VL  CSH+  +  G K    +  +  +         ++ +  + G L +A +  
Sbjct: 578 LVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFI 637

Query: 257 LEIQRK-DVVTWNAMISGYAQHGKGE 281
             +  K D + W   +     HG  E
Sbjct: 638 NSMPYKADALVWRTFLGACRVHGNLE 663


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 360/612 (58%), Gaps = 49/612 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +T  +WNS+++G  K  G   +A  LF+ +P  +++++  M++       D+ +A  
Sbjct: 156 MAERTLADWNSMISGCWKS-GNETEAVVLFNMMPARNIITWTSMVTG-YAKMGDLESARR 213

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--------------------- 99
           +F  +P +   SWN M S + QK+   +A +LF  M E+                     
Sbjct: 214 YFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGD 273

Query: 100 ------------------NSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMIS 140
                             NS   +A++  + + G L+ A  +F ++   ++ V W  MIS
Sbjct: 274 PTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMIS 333

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG-LGIRPNAS 199
            Y + GK+ LA +LFD MP +++V+WN+MIAGY +N  +   ++L + MI  + I+P+  
Sbjct: 334 AYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEV 393

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +++SVL  C H+ +L+L   V  +V +  +    +    LI MY KCG + DA ++F  +
Sbjct: 394 TIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             +DVV++N +ISG+A +G G++A++L   M++EG++PD +T++ +L AC+HAGL++ G 
Sbjct: 454 GTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGK 513

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
             F S+      A   DHY CMVDLLGRAG+L EA  LI+ MP KP   ++G+LL+A R+
Sbjct: 514 NVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRI 568

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           HKR+ L E AA  LF L P N  G YV L+NIYA+  +W+DV R+R  MK+  + K  G 
Sbjct: 569 HKRVGLGELAASKLFELEPQNL-GNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGM 627

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SW+E    VH+F  GDR H +   I++ L ELE++MK  G+V D   AL  V EE KE++
Sbjct: 628 SWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEM 687

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L  HSEKLAI F L+   +GT IRV KNLR+C DCH A K IS +E REI+VRD  RFH 
Sbjct: 688 LGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHC 747

Query: 560 FKDGTCSCGDYW 571
           F +G CSC DYW
Sbjct: 748 FSEGMCSCHDYW 759



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 186/376 (49%), Gaps = 39/376 (10%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           PQP V  Y I L+     S ++  A+   +   I D    N ++  + +   +  AR+LF
Sbjct: 98  PQPFVYIYLIKLAG---KSGNMFHAY-VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLF 153

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             M E+    W++MISG  + G   +AV LF + P ++++ WT+M++GY K G ++ A +
Sbjct: 154 EQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARR 213

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            FDEMP +++V+WNAM + Y +    ++ L L   M+  GI P+ ++    +  CS +  
Sbjct: 214 YFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGD 273

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--QR---------- 261
             L   + +++ +  +  ++   T L+ M+ K G+LE A  +F E+  QR          
Sbjct: 274 PTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMIS 333

Query: 262 --------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSI 300
                               +DVV+WN+MI+GYAQ+G+   ++ LF +M     ++PD +
Sbjct: 334 AYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEV 393

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T  ++L AC H G + L     D +V +  I      +  ++ +  + G + +A  + + 
Sbjct: 394 TIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQT 452

Query: 361 MPFKPQPAIFGTLLSA 376
           M  +   + F TL+S 
Sbjct: 453 MGTRDVVS-FNTLISG 467


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/518 (43%), Positives = 324/518 (62%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           F+ +P +D  SWNT+ISG  Q    +  +   R++  A    +S + S+++  + E   L
Sbjct: 193 FEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNL 252

Query: 118 DKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            K  E+   A        V   +++I  Y K  +VD + ++F  +P  + ++WN++IAG 
Sbjct: 253 LKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGC 312

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V+N   ++GLK  + M+   I+PN  S SS++  C+HL++L LGKQ+H  + +S    + 
Sbjct: 313 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 372

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+ MY KCG++  A  +F +++  D+V+W AMI GYA HG    A+ LF +M+ E
Sbjct: 373 FIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVE 432

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KP+ + F+A+L AC+HAGLVD   +YF+SM  DY I    +HY  + DLLGR G+L E
Sbjct: 433 GVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEE 492

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A + I  M  +P  +++ TLL+ACRVHK ++LAE  +  LF ++P N  G YV L+NIY+
Sbjct: 493 AYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQN-IGAYVLLSNIYS 551

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  +W D  ++R++M++  + K P  SWIE+   VH F +GD+ HP    I+E LK L +
Sbjct: 552 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLE 611

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +M+  GYV D    LH V EE K  LL  HSE+LAI FG+I  P GT IRV KNLRVC D
Sbjct: 612 QMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVD 671

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH ATK+IS I  REI+VRD +RFHHFKDG CSCGD+W
Sbjct: 672 CHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 121/214 (56%), Gaps = 9/214 (4%)

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K+F+ MP +++V+WN +I+G  +N   ED L ++R M    +RP++ +LSSVL   +  
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
            +L  GK++H    ++    D    + LI MY KC  ++D+C++F  + + D ++WN++I
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           +G  Q+G  ++ L+ F +M    +KP+ ++F +++ AC H   + LG Q     ++ Y I
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ-----LHGYII 364

Query: 332 AAKPDH----YTCMVDLLGRAGKLVEAVDLIKKM 361
            ++ D      + +VD+  + G +  A  +  KM
Sbjct: 365 RSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 398



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 30/183 (16%)

Query: 154 LFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           +F+ +P+    + W ++I  Y  +      L     M+  G  P+ +   SVL  C+ + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC------------------- 253
            L+ G+ VH  + +  +  D      L++MY K   LE+                     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 254 ----------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
                     K+F  + ++D+V+WN +ISG AQ+G  E AL +  +M +  ++PDS T  
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 304 ALL 306
           ++L
Sbjct: 241 SVL 243



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L   S + S    KQ+H  + ++ L    + L+ ++S+Y     L D+  +F  +   
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSP 68

Query: 263 -DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
              + W ++I  Y  HG    +L  F +M   G  PD   F ++L +C 
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/569 (41%), Positives = 341/569 (59%), Gaps = 24/569 (4%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA+++FD+    DVVSY  +++    +   + +A   F  +PIKD  SWN MIS
Sbjct: 135 QNGRLEDARKVFDQSSHRDVVSYTALITG-YASKGYIASAQKMFDEIPIKDVVSWNAMIS 193

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW-- 135
           G+ +  N  +A +LF  M + N     S M+S    C Q   ++EL +      V +W  
Sbjct: 194 GYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ-SASIELGR-----QVHSWID 247

Query: 136 -----------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                       A+I  Y+K G+V+ A  LF+ +  K++++WN +I GY   +  ++ L 
Sbjct: 248 DHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALL 307

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISM 242
           L + M+  G  PN  ++ S+L  C+HL ++++G+ +H  + K    +   ++  T LI M
Sbjct: 308 LFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDM 367

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCGD+E A ++F  I  + + +WNAMI G+A HG+   A  +F +M+   ++PD ITF
Sbjct: 368 YAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITF 427

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG +G   EA ++I  M 
Sbjct: 428 VGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTME 487

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA   +W++VA
Sbjct: 488 MEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNP-GSYVLLSNIYATAGRWNEVA 546

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           +IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VP
Sbjct: 547 KIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 606

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS
Sbjct: 607 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 666

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I KREII RD TRFHHF+DG CSC DYW
Sbjct: 667 KIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   NL+ WN M  G+  +S     L L   MI LG+ PN  +   +
Sbjct: 35  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 94

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------------- 251
           L  C+   + + G+Q+H  V K     D    T LISMY + G LED             
Sbjct: 95  LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 252 ------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                             A K+F EI  KDVV+WNAMISGYA+ G  ++AL LF +M   
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V+++ AC  +  ++LG Q   S ++D+G  +       ++DL  + G++  
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 273

Query: 354 AVDLIKKMPFK 364
           A  L + + +K
Sbjct: 274 ACGLFEGLSYK 284



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 167/404 (41%), Gaps = 86/404 (21%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSC---------- 47
           +K  V+WN++++G+A + G  K+A ELF ++ + +V        +++ +C          
Sbjct: 182 IKDVVSWNAMISGYA-ETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 48  -----------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                  + +   +V  A   F+ L  KD  SWNT+I G+    
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECG--QLDKAVELFKVAPVKSVV----A 134
              +A  LF  M       N V+  +++      G  ++ + + ++    +K V      
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A+++FD +  ++L +WNAMI G+  +  A     +   M    I
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH   L LG+     +F+S   K+   +TP +  Y           
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRH----IFRS--MKEDYKITPKLEHY----------- 463

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                          MI      G  ++A  + + M+   M+PD + + +LL AC   G 
Sbjct: 464 -------------GCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMHGN 507

Query: 315 VDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDL 357
           V+LG  Y  +++    I  K P  Y  + ++   AG+  E   +
Sbjct: 508 VELGESYAQNLIK---IEPKNPGSYVLLSNIYATAGRWNEVAKI 548


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/531 (40%), Positives = 331/531 (62%), Gaps = 12/531 (2%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSW 104
           LL  D V   F+    +P KD  S+NT+I+G+ Q      A    R++  +  + ++ + 
Sbjct: 153 LLGIDSVRKVFEL---MPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTL 209

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
           S+++  + E   + K  E+      K     V   ++++  Y K  +++ +E++F  +  
Sbjct: 210 SSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYR 269

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++ ++WN+++AGYV+N    + L+L R M+   +RP A + SSV+  C+HL++L LGKQ+
Sbjct: 270 RDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQL 329

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  V +    ++    + L+ MY KCG+++ A K+F  +   D V+W A+I G+A HG G
Sbjct: 330 HGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHG 389

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A+ LF++MK +G+KP+ + FVA+L AC+H GLVD    YF+SM   YG+  + +HY  
Sbjct: 390 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 449

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           + DLLGRAGKL EA D I KM  +P  +++ TLLS+C VHK L+LAE  A  +F ++  N
Sbjct: 450 VADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSEN 509

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G YV + N+YA+  +W ++A++RL +++  + K P  SWIE+    H F SGDR HP 
Sbjct: 510 -MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 568

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
           +  I+E LK + ++M+  GYV D    LH V EE K +LL  HSE+LA+AFG+I    GT
Sbjct: 569 MDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGT 628

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IRV KN+R+C DCH A K+IS I +REIIVRD +RFHHF  G+CSCGDYW
Sbjct: 629 TIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 189/397 (47%), Gaps = 17/397 (4%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           K + + K     F +       S +I++S I  N   +  A   F+ L      +W ++I
Sbjct: 19  KSKSQAKQLHAQFIRTQSLSHTSASIVIS-IYTNLKLLHEALLVFKTLESPPVLAWKSVI 77

Query: 78  SGFVQKKNMAKARDLFLAM------PEKN---SVSWSAMISGYIECGQLDKAVELFKVAP 128
             F  +   ++A   F+ M      P+ N   SV  S  +   +  G+   +V  F V  
Sbjct: 78  RCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE---SVHGFIVRL 134

Query: 129 VKSVVAWT--AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                 +T  A+++ Y K   +D   K+F+ MP K++V++N +IAGY ++   ED L+++
Sbjct: 135 GMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMV 194

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R M    ++P+A +LSSVL   S    +  GK++H  V +  +  D    + L+ MY K 
Sbjct: 195 REMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKS 254

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
             +ED+ ++F  + R+D ++WN++++GY Q+G+  +ALRLF +M    ++P ++ F +++
Sbjct: 255 ARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVI 314

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC H   + LG Q    ++   G        + +VD+  + G +  A  +  +M    +
Sbjct: 315 PACAHLATLHLGKQLHGYVLRG-GFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDE 373

Query: 367 PAIFGTLLS-ACRVHKRLDLAEFAAMNLFNLNPANAA 402
            +    ++  A   H    ++ F  M    + P   A
Sbjct: 374 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 410



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 156/358 (43%), Gaps = 53/358 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V++N+V+AG+A Q G  +DA  +  ++   D+      LS +L    + V    
Sbjct: 166 MPRKDVVSYNTVIAGYA-QSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLK 224

Query: 61  ------FFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 +  R  I  D    ++++  + +   +  +  +F  +  ++S+SW+++++GY++
Sbjct: 225 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQ 284

Query: 114 CGQLDKAVELFK----------------VAPV-----------------------KSVVA 134
            G+ ++A+ LF+                V P                        +++  
Sbjct: 285 NGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFI 344

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +A++  Y K G +  A K+FD M   + V+W A+I G+  +    + + L   M   G+
Sbjct: 345 ASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 404

Query: 195 RPNASSLSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +PN  +  +VL  CSH+  + +     + +     L ++      +  +  + G LE+A 
Sbjct: 405 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 464

Query: 254 KLFLEIQRKDVVT-WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
               +++ +   + W+ ++S  + H    K L L +K+ ++    DS    A +L CN
Sbjct: 465 DFISKMRVEPTGSVWSTLLSSCSVH----KNLELAEKVAEKIFTIDSENMGAYVLMCN 518



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 134/285 (47%), Gaps = 41/285 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSY-NIMLSCILLNS------ 52
           + +++WNS++AG+  Q G+  +A  LF ++     +P  V++ +++ +C  L +      
Sbjct: 270 RDSISWNSLVAGYV-QNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQ 328

Query: 53  -DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
               V    F + + I      + ++  + +  N+  AR +F  M   + VSW+A+I G+
Sbjct: 329 LHGYVLRGGFGRNIFIA-----SALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGH 383

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKN 162
              G   +AV LF+    + V    VA+ A+++     G VD A   F+ M       + 
Sbjct: 384 ALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQE 443

Query: 163 LVTWNAMI-----AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           L  + A+      AG +E ++  D +  +R      + P  S  S++L  CS   +L+L 
Sbjct: 444 LEHYAAVADLLGRAGKLEEAY--DFISKMR------VEPTGSVWSTLLSSCSVHKNLELA 495

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++V + +F     ++  A   + +MY   G  ++  KL L +++K
Sbjct: 496 EKVAEKIFTID-SENMGAYVLMCNMYASNGRWKEMAKLRLRVRKK 539


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/570 (40%), Positives = 336/570 (58%), Gaps = 10/570 (1%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S L     + G ++DA+ +F ++    VV YN +++  LL    +  A   FQ +  +D
Sbjct: 184 GSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG-LLRCKMIEDAKGLFQLMVDRD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           + +W TM++G  Q     +A D+F  M  E   +      S    CG L  + E  ++  
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 302

Query: 129 V-------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
                    +V   +A++  Y K   + LAE +F  M  +N+++W AMI GY +N+ +E+
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            ++    M   GI+P+  +L SV+  C++L+SL+ G Q H L   S L +  T    L++
Sbjct: 363 AVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVT 422

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y KCG +EDA +LF E+   D V+W A+++GYAQ GK ++ + LF+KM   G+KPD +T
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVT 482

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+ +L AC+ AGLV+ G  YFDSM  D+ I    DHYTCM+DL  R+G+  EA + IK+M
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM 542

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P  P    + TLLS+CR+   +++ ++AA NL   +P N A  YV L +++AA  +W +V
Sbjct: 543 PHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPAS-YVLLCSMHAAKGQWTEV 601

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           A +R  M++  V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M   GY 
Sbjct: 602 AHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYK 661

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PD+   LH V +  K  ++  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH ATK+I
Sbjct: 662 PDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFI 721

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S I  R+I+VRD  RFH F DGTCSCGD+W
Sbjct: 722 SKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 201/441 (45%), Gaps = 75/441 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  +AK  G+L  A+ +FD++P P++ + N +LS  L +S  V      F  +P +D
Sbjct: 52  NHLLTAYAKS-GRLARARRVFDEMPDPNLFTRNALLSA-LAHSRLVPDMERLFASMPERD 109

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-----SWSAMI---------------- 108
             S+N +I+GF    + A++  L+ A+  + SV     + SAMI                
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 109 -------------------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
                                Y + G +  A  +F+    K+VV +  +I+G ++   ++
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A+ LF  M  ++ +TW  M+ G  +N    + L + R M   G+  +  +  S+L  C 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L++ + GKQ+H  + ++    +    + L+ MY KC  +  A  +F  +  +++++W A
Sbjct: 290 ALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 322
           MI GY Q+   E+A+R F +M+ +G+KPD  T  +++ +C +   ++ G Q+        
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 323 --------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIK 359
                   +++V  YG     +                +T +V    + GK  E +DL +
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 360 KM---PFKPQPAIFGTLLSAC 377
           KM     KP    F  +LSAC
Sbjct: 470 KMLVNGLKPDGVTFIGVLSAC 490



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 43/202 (21%)

Query: 212 SSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLE-------------------- 250
           + +++   VH L+ K+ L    T  L  L++ Y K G L                     
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNAL 85

Query: 251 -----------DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPD 298
                      D  +LF  +  +D V++NA+I+G++  G   ++++L+   +++E ++P 
Sbjct: 86  LSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPT 145

Query: 299 SITFVALLLACNHAGLVDLG----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            IT  A+++  +      LG     Q        Y     P     +VD+  + G + +A
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSP-----LVDMYAKMGLIRDA 200

Query: 355 VDLIKKMPFKPQPAIFGTLLSA 376
             + ++M  K    ++ TL++ 
Sbjct: 201 RRVFQEMEAK-TVVMYNTLITG 221


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 353/615 (57%), Gaps = 48/615 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGK------LKDAQELFDKIPQPDVVSYNIMLSCIL-------- 49
           K  V+WNS++ G+A++         L+  Q    K+   +    N++  C+         
Sbjct: 268 KNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLK 327

Query: 50  ----------LNSDDVVA-AF--------------DFFQRLPIKDTASWNTMISGFVQKK 84
                     L S+++VA AF                F  +  K  +SWN ++ G+ Q  
Sbjct: 328 ELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNS 387

Query: 85  NMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLD-----KAVELFKVAPVKSVVAWT-- 136
           +  KA DL+L M +      W  + S  + C ++      + +  F +    +V  +   
Sbjct: 388 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 447

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           +++S Y+  GK   A+ LFD M  ++LV+WN MIAGY +N   ++ + L R M+  GI+P
Sbjct: 448 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 507

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
              ++  V   CS LS+L+LGK++H    K+ L +D    + +I MY K G +  + ++F
Sbjct: 508 YEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 567

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ KDV +WN +I+GY  HG+G++AL LF+KM   G+KPD  TF  +L+AC+HAGLV+
Sbjct: 568 DRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVE 627

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G++YF+ M+N + I  K +HYTC+VD+LGRAG++ +A+ LI++MP  P   I+ +LLS+
Sbjct: 628 DGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 687

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR+H  L L E  A  L  L P      YV ++N++A   KWDDV R+R  MK+  + K 
Sbjct: 688 CRIHGNLGLGEKVANKLLELEPEKPEN-YVLISNLFAGSGKWDDVRRVRGRMKDIGLQKD 746

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
            G SWIEVG  VH F  GD + PEL  + E  + LE ++   GY PD    LH + EE K
Sbjct: 747 AGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDK 806

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
             +L  HSEKLAI+FGL+    G P+RV+KNLR+CGDCH A K+IS +  R+I+VRD  R
Sbjct: 807 IGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKR 866

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF+DG CSCGDYW
Sbjct: 867 FHHFRDGICSCGDYW 881



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 234/526 (44%), Gaps = 101/526 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIMLSCILLNSDD 54
           M  +  V+WNS++ GF+ + G L+++   F ++        PDV +   +L  +    +D
Sbjct: 162 MPERNLVSWNSIICGFS-ENGFLQESFNAFREMLVGEESFVPDVATLVTVLP-VCAGEED 219

Query: 55  V---VAAFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           +   +A      +L + ++    N++I  + + + +++A+ LF    +KN VSW++MI G
Sbjct: 220 IEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGG 279

Query: 111 Y------------IECGQLDKA------VELFKVAPV----------------------- 129
           Y            ++  Q + A        +  V PV                       
Sbjct: 280 YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQ 339

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            + +   A I+ Y + G +  +E++FD M TK + +WNA++ GY +NS     L L   M
Sbjct: 340 SNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM 399

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              G+ P+  ++ S+LL CS + SL  G+++H    ++ L  D      L+S+Y  CG  
Sbjct: 400 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKP 459

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             A  LF  ++ + +V+WN MI+GY+Q+G  ++A+ LF +M  +G++P  I  + +  AC
Sbjct: 460 FAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGAC 519

Query: 310 NHAGLVDLG---------------IQYFDSMVNDY------GIAAK---------PDHYT 339
           +    + LG               I    S+++ Y      G++ +            + 
Sbjct: 520 SQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWN 579

Query: 340 CMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRL---DLAEFAAM-N 392
            ++   G  G+  EA++L +KM     KP    F  +L AC  H  L    L  F  M N
Sbjct: 580 VIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS-HAGLVEDGLEYFNQMLN 638

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           L N+ P      Y  + ++     + DD  R+        + +MPG
Sbjct: 639 LHNIEPKLEH--YTCVVDMLGRAGRIDDALRL--------IEEMPG 674



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 130/261 (49%), Gaps = 13/261 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLF---LAMPEKNSVSWSAMISGYIECGQLD 118
           F +L  K+   WN ++S + + +    A  +F   +++ E    +++         G LD
Sbjct: 57  FDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLD 116

Query: 119 KAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             +         K+  V  V    A+I+ Y K G V+ A K+F+ MP +NLV+WN++I G
Sbjct: 117 LGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICG 176

Query: 173 YVENSWAEDGLKLLR-MMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           + EN + ++     R M++G     P+ ++L +VL  C+    ++ G  VH L  K  L 
Sbjct: 177 FSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLN 236

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           ++      LI MY KC  L +A  LF +  +K++V+WN+MI GYA+     +   L  KM
Sbjct: 237 EELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKM 296

Query: 291 K--DEGMKPDSITFVALLLAC 309
           +  D  MK D  T + +L  C
Sbjct: 297 QTEDAKMKADEFTILNVLPVC 317



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 12/268 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--PEKNSVSWSAMISGYI 112
           V  A   F+ +P ++  SWN++I GF +   + ++ + F  M   E++ V   A +   +
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211

Query: 113 ECGQLDKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                ++ +E          K+   + ++   ++I  Y K   +  A+ LFD+   KN+V
Sbjct: 212 PVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIV 271

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQ 222
           +WN+MI GY           LL+ M     +  A   +  +VL  C   S LQ  K++H 
Sbjct: 272 SWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG 331

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
             ++  L  +       I+ Y +CG L  + ++F  +  K V +WNA++ GYAQ+    K
Sbjct: 332 YSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRK 391

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACN 310
           AL L+ +M D G+ PD  T  +LLLAC+
Sbjct: 392 ALDLYLQMTDSGLDPDWFTIGSLLLACS 419



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 3/177 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI- 194
           T +I+ Y   G    +  +FD++  KNL  WNA+++ Y  N   ED + +   +I +   
Sbjct: 38  TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 97

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P+  +L  V+  C+ L  L LG+ +H +  K  L  D      LI+MY KCG +E+A K
Sbjct: 98  KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 157

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLAC 309
           +F  +  +++V+WN++I G++++G  +++   F +M   +E   PD  T V +L  C
Sbjct: 158 VFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVC 214



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           +L  C     +++G+++H++V  S   C D    T +I+MY  CG   D+  +F +++RK
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGI-Q 320
           ++  WNA++S Y ++   E A+ +F ++      KPD+ T   ++ AC  AGL+DLG+ Q
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 121

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               M     + +       ++ + G+ G + EAV + + MP
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP 163


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 360/618 (58%), Gaps = 55/618 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           + +V +N++L G++K+ G  ++A  LF K+ +          + IL   +  DD+    +
Sbjct: 262 RDSVTFNALLTGYSKE-GFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDI----E 316

Query: 61  FFQRLP---IKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           F Q++    +K    WN  ++      + +   + +A  LF  MPE + +S++ +++ Y 
Sbjct: 317 FGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYA 376

Query: 113 ECGQLDKAVELFK---------------------------------------VAPVKSVV 133
             G++ +++ELFK                                          +  ++
Sbjct: 377 WNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEIL 436

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              +++  Y K G+   A ++F ++  ++ V W AMI+ YV+    EDGLKL   M    
Sbjct: 437 VGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAK 496

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I  +A++ +S++  C+ L+SL LGKQ+H  +  S    +  + + L+ MY KCG ++DA 
Sbjct: 497 IGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDAL 556

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F E+  ++ V+WNA+IS YAQ+G G+  LRLF++M   G++PDS++ +++L AC+H G
Sbjct: 557 QMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCG 616

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+ G+QYFDSM   Y +  K +HY   +D+L R G+  EA  L+ +MPF+P   ++ ++
Sbjct: 617 LVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSV 676

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L++C +HK  +LA+ AA  LFN+     A  YV ++NIYAA  +WD+V +++ +M+E  V
Sbjct: 677 LNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGV 736

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+P YSW+E+    H F + D+ HP++  I +KL ELE++M   GY PD   ALH V E
Sbjct: 737 KKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDE 796

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           EVK + L +HSE++AIAF LI  P G+PI V KNLR C DCH A K IS I +REI VRD
Sbjct: 797 EVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRD 856

Query: 554 TTRFHHFKDGTCSCGDYW 571
           ++RFHHF+DG C+C DYW
Sbjct: 857 SSRFHHFRDGFCTCRDYW 874



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 179/364 (49%), Gaps = 14/364 (3%)

Query: 3   VKTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT  N N+  + F      QRG L  A++LFD++P  ++ S N M+    + S ++  A
Sbjct: 93  IKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMG-YIKSGNLSEA 151

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC 114
              F  +  +   +W  +I G+ Q     +A  LF+ M     + + VS + ++SG+ E 
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 115 GQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
             +++  ++     K+    ++V   +++  Y K   + LA +LF+++P ++ VT+NA++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            GY +  +  + + L   M  +G RP   + +++L     L  ++ G+QVH  V K    
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            +      L+  Y K   + +A KLF E+   D +++N +++ YA +G+ +++L LF ++
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           +  G    +  F  LL     +  +D+G Q     +    I+      + +VD+  + G+
Sbjct: 392 QFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS-LVDMYAKCGE 450

Query: 351 LVEA 354
             EA
Sbjct: 451 FGEA 454



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 138/271 (50%), Gaps = 17/271 (6%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           N+   + ++  +++ G L+ A +LF   P K++ +   MI GY+K G +  A  LFD M 
Sbjct: 100 NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMF 159

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +  VTW  +I GY +N+   +   L   M   GI P+  SL+++L G +   S+   +Q
Sbjct: 160 QRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQ 219

Query: 220 VHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           VH  V K  L  D+T +    L+  YCK   L  A +LF +I  +D VT+NA+++GY++ 
Sbjct: 220 VHSHVIK--LGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKE 277

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G   +A+ LF KM++ G +P   TF A+L A      ++ G Q        +G   K + 
Sbjct: 278 GFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQV-------HGFVVKCNF 330

Query: 338 Y------TCMVDLLGRAGKLVEAVDLIKKMP 362
                    ++D   +  ++VEA  L  +MP
Sbjct: 331 VWNVFVANALLDFYSKHDRVVEASKLFYEMP 361



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 187/410 (45%), Gaps = 48/410 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS---------- 46
           M  +T V W  ++ G+A Q  + ++A  LF ++ +    PD VS   +LS          
Sbjct: 158 MFQRTAVTWTMLIGGYA-QNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNE 216

Query: 47  -------CILLNSDDVVA-----------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                   I L  D  +                  AF  F  +P +D+ ++N +++G+ +
Sbjct: 217 VRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSK 276

Query: 83  KKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVA 134
           +    +A +LF  M E        +++A+++  I+   ++   ++     K   V +V  
Sbjct: 277 EGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFV 336

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A++  Y K  +V  A KLF EMP  + +++N ++  Y  N   ++ L+L + +   G 
Sbjct: 337 ANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGF 396

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
                  +++L   +   +L +G+Q+H     +    +      L+ MY KCG+  +A +
Sbjct: 397 DRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANR 456

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F ++  +  V W AMIS Y Q G  E  L+LF +M+   +  D+ T+ +++ AC     
Sbjct: 457 IFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLAS 516

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           + LG Q    ++   G  +     + +VD+  + G + +A+ + ++MP +
Sbjct: 517 LTLGKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVR 565


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/566 (40%), Positives = 336/566 (59%), Gaps = 23/566 (4%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM 76
           A Q GK +  + +F K  +P +   N +L+ + +  + +  A D F  +P ++  SW TM
Sbjct: 70  AVQEGK-RVHEHIFCKGYEPKMFVVNTLLN-MYVKFNLLEEAEDLFDEMPERNVVSWTTM 127

Query: 77  ISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISG--------YIECGQLDKAVELFK 125
           IS +  K N    + L L   E    N  ++S+++           + CG +   +E   
Sbjct: 128 ISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLE--- 184

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                 V   +A+I  Y K+  +D A  +FDEMPT++LV WN++I G+ +NS   + L L
Sbjct: 185 ----SDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNL 240

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
            + M   G   + ++L+SVL  C+ L+ L+LG+QVH  V K    +D      LI MYCK
Sbjct: 241 FKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCK 298

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           CG LEDA   F  +  KDV++W+ M++G AQ+G   +AL LF+ MK+ G +P+ IT + +
Sbjct: 299 CGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGV 358

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC+HAGLV+ G  YF SM   +G+    +HY C++DLLGRAG+L EAV LI +M  +P
Sbjct: 359 LFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEP 418

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
               + TLL ACRVH+ +DLA +AA  +  L P +A G Y+ L+NIYA  ++W+DVA +R
Sbjct: 419 DSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDA-GTYILLSNIYANTQRWEDVAEVR 477

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            +M    + K PG SWIEV   +H F  GD  HP++  I ++L +L +R+   GYVPD  
Sbjct: 478 KTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTN 537

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
           F L  +  E KE  L +HSEKLAI FGL+ +     +R+ KNLR+CGDCH   K +S +E
Sbjct: 538 FVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRME 597

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            R I++RD  R+HHF+DG CSCGDYW
Sbjct: 598 HRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 21/180 (11%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+  +A + S ++  CS   ++Q GK+VH+ +F          +  L++MY K   LE+A
Sbjct: 50  GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
             LF E+  ++VV+W  MIS Y+     +KAL+    M  EG++P+  T+ ++L AC+  
Sbjct: 110 EDLFDEMPERNVVSWTTMISAYSNK-LNDKALKCLILMFREGVRPNMFTYSSVLRACDGL 168

Query: 311 ------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                 H G++  G++  D  V            + ++D+  +   L  A+ +  +MP +
Sbjct: 169 PNLRQLHCGIIKTGLES-DVFVR-----------SALIDVYSKWSDLDNALGVFDEMPTR 216



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 16/135 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------L 50
           M  +  V WNS++ GFA Q     +A  LF ++ +   ++    L+ +L          L
Sbjct: 213 MPTRDLVVWNSIIGGFA-QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLEL 271

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                V    F Q L +      N +I  + +  ++  A   F  M EK+ +SWS M++G
Sbjct: 272 GRQVHVHVLKFDQDLILN-----NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAG 326

Query: 111 YIECGQLDKAVELFK 125
             + G   +A+ELF+
Sbjct: 327 LAQNGYSRQALELFE 341


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/522 (43%), Positives = 314/522 (60%), Gaps = 9/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECG- 115
           A   F  L  K   SW  MI+G ++   + +   LF+ M E+N   +   M+S  +ECG 
Sbjct: 251 ARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGF 310

Query: 116 ----QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               QL K +   + +     S+   TA++  Y K   +  A  LFD    ++++ W AM
Sbjct: 311 TGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAM 370

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           ++ Y + +  +    L   M   G+RP   ++ S+L  C+   +L LGK VH  + K  +
Sbjct: 371 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV 430

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D    T L+ MY KCGD+  A +LF+E   +D+  WNA+I+G+A HG GE+AL +F +
Sbjct: 431 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 490

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+ +G+KP+ ITF+ LL AC+HAGLV  G + F+ MV+ +G+  + +HY CMVDLLGRAG
Sbjct: 491 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 550

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA ++IK MP KP   ++G L++ACR+HK   L E AA  L  + P N  G  V ++
Sbjct: 551 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN-CGYNVLMS 609

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYAA  +W D A +R +MK   + K PG+S IEV   VHEF  GD+ HP++  I+E L 
Sbjct: 610 NIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLA 669

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           E+ +++  AGYVPD    L  + EE KE  L +HSEKLA+AFGLI     TPIR+ KNLR
Sbjct: 670 EMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLR 729

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH ATK +S I  R IIVRD  RFHHF++G CSCGDYW
Sbjct: 730 VCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 158/303 (52%), Gaps = 11/303 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG-- 115
           F ++  +D  SW+TMI    + K    A +L   M       + V+  +M++ + +    
Sbjct: 152 FDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANM 211

Query: 116 QLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           ++ KA+  + +    +    V   TA++  Y K G + LA +LF+ +  K +V+W AMIA
Sbjct: 212 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           G + ++  E+G KL   M    I PN  ++ S+++ C    +LQLGKQ+H  + ++    
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                T L+ MY KC D+ +A  LF   Q +DV+ W AM+S YAQ    ++A  LFD+M+
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++P  +T V+LL  C  AG +DLG ++  S ++   +       T +VD+  + G +
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDI 450

Query: 352 VEA 354
             A
Sbjct: 451 NAA 453



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 10/290 (3%)

Query: 110 GYIECGQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           G +   QL K +  F  K    + V    A++  Y +   V+ A  +FD+M  +++V+W+
Sbjct: 105 GQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWS 164

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
            MI     N   +  L+L+R M  + +RP+  ++ S++   +  +++++GK +H  V ++
Sbjct: 165 TMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRN 224

Query: 228 PLCKD--TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
              +       T L+ MY KCG L  A +LF  + +K VV+W AMI+G  +  + E+  +
Sbjct: 225 SNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTK 284

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF +M++E + P+ IT ++L++ C   G + LG Q    ++ + G +      T +VD+ 
Sbjct: 285 LFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN-GFSVSLALATALVDMY 343

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           G+   +  A  L      +    I+  +LSA      +D     A NLF+
Sbjct: 344 GKCSDIRNARALFDSTQNR-DVMIWTAMLSAYAQANCID----QAFNLFD 388



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           SVL  C  +S  QLGK++H  V K  L +D      L+ MY +C  +E A  +F ++  +
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           DVV+W+ MI   +++ + + AL L  +M    ++P  +  V+++
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMV 202



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+ AA   F     +D   WN +I+GF       +A D+F  M  +    N +++  ++ 
Sbjct: 449 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 508

Query: 110 GYIECGQLDKAVELFK-----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NL 163
                G + +  +LF+        V  +  +  M+    + G +D A ++   MP K N 
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 568

Query: 164 VTWNAMIA 171
           + W A++A
Sbjct: 569 IVWGALVA 576


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/614 (38%), Positives = 350/614 (57%), Gaps = 45/614 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD--VVAA 58
           M  +   +WN++L+ +AK  G ++D + +FD +P  D VSYN ++S    N      +  
Sbjct: 84  MTQRDNFSWNAMLSLYAKS-GLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGV 142

Query: 59  FDFFQRLPIKDTAS------------------------------------WNTMISGFVQ 82
           F   Q+  +K T                                       N +   + +
Sbjct: 143 FLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYAR 202

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAM 138
              + +AR LF  M  +N V+W+ MISGY++  Q +K ++LF    V ++    V  +++
Sbjct: 203 CGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSV 262

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y++ G +D A K+F E+  K+ V W  MI G  +N   ED L L   M+    RP+ 
Sbjct: 263 LGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDG 322

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            ++SSV+  C+ L+SL  G+ VH   F   +  D    + L+ MYCKCG   DA  +F  
Sbjct: 323 YTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFST 382

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +Q ++VV+WN+MI GYA +G+  +AL L++ M +E +KPDS+TFV +L AC HAGLV+ G
Sbjct: 383 MQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEG 442

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            +YF SM + +G+   PDHY CMV+L GR+G + +AVDLI  M  +P   I+ T+LS C 
Sbjct: 443 KEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCV 502

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +   +   E AA  L  LNP NA   Y+ L+N+YAA  +W DVA IR  MK  +V K   
Sbjct: 503 MKGDIKHGEMAARCLIELNPFNAVP-YIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSA 561

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
           YSWIE+   VH+F + DR HP+   IH +L  L ++++ AG+ P+    LH  GE+ K +
Sbjct: 562 YSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLE 621

Query: 499 LLLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
            + +HSEKLA+A+GLIK P G TPIR+ KN+R C DCH   K++S I +R +I+RD+ RF
Sbjct: 622 SINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRF 681

Query: 558 HHFKDGTCSCGDYW 571
           HHF +G CSC DYW
Sbjct: 682 HHFVEGKCSCKDYW 695



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           Q K +     L L  P    +  + +++ Y + G++  A +LF     +   +W AM+S 
Sbjct: 40  QAKRLKSHMHLHLFKPNDTFIH-NRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSL 98

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G V+    +FD MP+++ V++N +I+G+  N      L +   M   G++P   + 
Sbjct: 99  YAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTH 158

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            SVL  C+ L  L+ GKQ+H  +    L  +      L  +Y +CG+++ A +LF  +  
Sbjct: 159 VSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVI 218

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           ++VVTWN MISGY ++ + EK + LF +M+   +KPD +T  ++L A   AG +D   + 
Sbjct: 219 RNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKV 278

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 377
           F  +     +      +T M+    + GK  +A+ L  +M     +P      +++S+C
Sbjct: 279 FGEIREKDEVC-----WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSC 332



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 142/330 (43%), Gaps = 76/330 (23%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q  +LK    L    P  D   +N +L+ +   S ++  A   F  +  +D  SWN M+S
Sbjct: 40  QAKRLKSHMHLHLFKPN-DTFIHNRLLN-LYAKSGEISHARKLFDEMTQRDNFSWNAMLS 97

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAPVK-- 130
            + +   +   R +F  MP ++SVS++ +ISG+   G+   A+ +F       + P +  
Sbjct: 98  LYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYT 157

Query: 131 -------------------------------SVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                                          +V    A+   Y + G++D A +LFD M 
Sbjct: 158 HVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMV 217

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +N+VTWN MI+GY++N   E  + L   M    ++P+  + SSVL              
Sbjct: 218 IRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVL-------------- 263

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
                                  Y + G +++A K+F EI+ KD V W  MI G AQ+GK
Sbjct: 264 ---------------------GAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGK 302

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            E AL LF +M  E  +PD  T  +++ +C
Sbjct: 303 EEDALLLFSEMLLENARPDGYTISSVVSSC 332


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/499 (42%), Positives = 312/499 (62%), Gaps = 2/499 (0%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            T+IS + +   +  AR +F  M E N V+W+A+++    C  +  A ++F+  P++++ 
Sbjct: 145 TTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLT 204

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W  M++GY K G++ LA ++F +MP K+ V+W+ MI G+  N    D     R +   G
Sbjct: 205 SWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREG 264

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +RPN  SL+ VL  C+   + + G+ +H  V KS   +  +    LI  Y KCG+L+ A 
Sbjct: 265 MRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMAR 324

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  + R+  V+W AMI+G A HG GE+A+RLF++M++  +KPDSITF+++L AC+HAG
Sbjct: 325 LVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAG 384

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVDLG  YF  MVN YGI    +HY CMVDL GRAGKL +A D + +MP  P   ++ TL
Sbjct: 385 LVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTL 444

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L AC +H  L LA      L  L+P N +G +V L+NIYA   KW DVA +R SM    +
Sbjct: 445 LGACSIHGNLYLAGQVKRQLSELDPEN-SGDHVLLSNIYAVAGKWKDVAALRRSMTHQRL 503

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVG 492
            K PG+S IEV  +++ F +G++ +   V  H+KL+E+  R+++  GYVP++   LH + 
Sbjct: 504 KKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIE 563

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            E KE  +  HSEKLA+AFG+ K+P G  IRV KNLR+C DCH   K IS + + EI+VR
Sbjct: 564 VEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVR 623

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D +RFH F  G+CSC DYW
Sbjct: 624 DRSRFHSFTHGSCSCRDYW 642



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 17/202 (8%)

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS----MYCKCG---DLEDACKLFLEIQR 261
           S   SL+  KQ+  L+FK+  C ++    PL+S    ++C       L  A +LFL+I+ 
Sbjct: 13  SKCKSLRTVKQIQALIFKT--CLNSY---PLVSGKLLLHCAVTLPDSLHYARRLFLDIRN 67

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQ 320
            DV  +N +I G +       AL+LF +M+ + +  PDS +F  LL A  +   +  G+Q
Sbjct: 68  PDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQ 127

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
               +   YG+ +     T ++ +      LV A  +  +M  +P    +  +++AC   
Sbjct: 128 -LHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-IEPNIVAWNAIVAACFRC 185

Query: 381 KRLDLAE--FAAMNLFNLNPAN 400
           + +  AE  F  M + NL   N
Sbjct: 186 EGVKDAEQVFRCMPIRNLTSWN 207


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/471 (44%), Positives = 311/471 (66%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y++CG +  A +LF    V+ + +W A+I+GYMK G++ +AE LF+ M  +N+V
Sbjct: 146 ASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIV 205

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +W AMI+GY +N +AE  L L   M+  G  ++PN  ++ SVL  C+  ++L+ G+++H 
Sbjct: 206 SWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 265

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDA--CKLFLEIQRKDVVTWNAMISGYAQHGKG 280
                 L  +++  T L  MY KC  L +A  C   +    K+++ WN MI+ YA HG G
Sbjct: 266 FANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCG 325

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A+ +F+ M   G++PD++TF+ LL  C+H+GL+D G+ +F+ M   + +  + +HY C
Sbjct: 326 VEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYAC 385

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           +VDLLGRAG+LVEA +LI +MP +  P+++G LL+ACR H+ L++AE AA  LF L P N
Sbjct: 386 VVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDN 445

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
           + G YV L+N+YA    W++V ++R  +K   + K PG SWIE+    H F   D+ HP+
Sbjct: 446 S-GNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQ 504

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I++ L+ L +++K+AGY+PD  F LH + EE KE  L  HSEKLAIAFGL+    G 
Sbjct: 505 AKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGV 564

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +RV KNLR+CGDCH ATK+IS I +REIIVRD  RFH FKDG+CSCGDYW
Sbjct: 565 VLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 15/210 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA++LFDK+   D+ S+N +++   +   ++  A D F+R+  ++  SW  MISG+
Sbjct: 156 GVIGDARKLFDKMIVRDMASWNALIAG-YMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 81  VQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQ---LDKAVELFKVAP-----V 129
            Q     +A  LF  M +  S    +W  ++S    C Q   L++   +   A      +
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKLLR 187
            S V  TA+   Y K   +  A   FD +    KNL+ WN MI  Y  +    + + +  
Sbjct: 275 NSSVQ-TALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 333

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
            M+  G++P+A +   +L GCSH   +  G
Sbjct: 334 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 363



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 34/196 (17%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           LG+  +  +L  VL  C+ LS + +G+ VH    +  L  D      LI MY KCG + D
Sbjct: 101 LGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGD 160

Query: 252 ACKLFLEIQRKDVVTWNA-------------------------------MISGYAQHGKG 280
           A KLF ++  +D+ +WNA                               MISGY Q+G  
Sbjct: 161 ARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFA 220

Query: 281 EKALRLFDKMKDEG--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
           E+AL LFD+M  +G  MKP+ +T V++L AC  +  ++ G +  D   N  G+       
Sbjct: 221 EQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD-FANGIGLHLNSSVQ 279

Query: 339 TCMVDLLGRAGKLVEA 354
           T +  +  +   LVEA
Sbjct: 280 TALAGMYAKCYSLVEA 295


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 345/560 (61%), Gaps = 22/560 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G  K+A+ +F  +   + VS+ +++    L       + + F ++  +    D  +  T+
Sbjct: 343 GCFKEARRVFSSLRDRNTVSWTVLIGG-FLQYGCFSESLELFNQMRAELMTVDQFALATI 401

Query: 77  ISGFVQKKNMAKARDLF-LAMPEKNS---VSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ISG   + +M  AR L  L++   ++   V  +++IS Y +CG L  A  +F     + +
Sbjct: 402 ISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDI 461

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIG 191
           V+WT M++ Y + G +  A + FD M T+N++TWNAM+  Y+++   EDGLK+   M+  
Sbjct: 462 VSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTE 521

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + P+  +  ++  GC+ + + +LG Q+     K  L  DT+ +  +I+MY KCG + +
Sbjct: 522 KDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISE 581

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F  + RKD+V+WNAMI+GY+QHG G++A+ +FD M  +G KPD I++VA+L +C+H
Sbjct: 582 ARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSH 641

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +GLV  G  YFD +  D+ ++   +H++CMVDLL RAG L+EA +LI +MP KP   ++G
Sbjct: 642 SGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWG 701

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LLSAC+ H   +LAE AA +LF+L+  ++ G Y+ LA IYA   K  D A++R  M++ 
Sbjct: 702 ALLSACKTHGNNELAELAAKHLFDLDSPDSGG-YMLLAKIYADAGKSVDSAQVRKLMRDK 760

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PGYSW+EV   VH F++ D  HP++++I EKL EL +++   GYV          
Sbjct: 761 GIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRT-------- 812

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            E ++ +  + HSEKLA+AFG++ +P   PI + KNLR+CGDCH   K IS +  RE ++
Sbjct: 813 -ESLRSE--IHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVI 869

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK G+CSCGDYW
Sbjct: 870 RDAVRFHHFKGGSCSCGDYW 889



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 208/456 (45%), Gaps = 63/456 (13%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I +P+V+++NIM++        +  A + F R+P +D  SWNT++SG
Sbjct: 77  GALPDARGLLRGDITEPNVITHNIMMNG-YAKLGSLSDAEELFGRMPRRDVTSWNTLMSG 135

Query: 80  FVQKKNMAKARDLFL-----------------AMPEKNSVSW------------------ 104
           + Q      A + F+                 AM    ++ W                  
Sbjct: 136 YYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQG 195

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                + ++  ++ CG +D A + F      +V    +M++GY K   VD A +LF+ MP
Sbjct: 196 DPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMP 255

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++V+WN M++   ++  A + L +   M   G+R ++++ +S L  C+ LSSL  GKQ
Sbjct: 256 ERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQ 315

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V +S  C D    + ++ +Y KCG  ++A ++F  ++ ++ V+W  +I G+ Q+G 
Sbjct: 316 LHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGC 375

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY- 338
             ++L LF++M+ E M  D      ++  C++   + L  Q        + ++ K  H  
Sbjct: 376 FSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQL-------HSLSLKSGHTR 428

Query: 339 -----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE-FAAMN 392
                  ++ +  + G L  A  +   M  +   +  G L +  +V       E F  M+
Sbjct: 429 AVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMS 488

Query: 393 LFNLNPANAA-GCYVQLA------NIYAAMKKWDDV 421
             N+   NA  G Y+Q         +Y+AM    DV
Sbjct: 489 TRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 17/290 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    +  AR L    + E N ++ + M++GY + G L  A ELF   P + V
Sbjct: 67  NTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDV 126

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS-----WAEDGLKLLR 187
            +W  ++SGY + G+   A + F  M        NA   G    S     W E  L+LL 
Sbjct: 127 TSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLG 186

Query: 188 MMIGLGIRPN---ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           ++   G + +   A+ +  + + C  +      KQ  Q+   +  C+++     +++ Y 
Sbjct: 187 LLTKFGFQGDPDVATGIVDMFVRCGAVDFAS--KQFSQIERPTVFCRNS-----MLAGYA 239

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           K   ++ A +LF  +  +DVV+WN M+S  +Q G+  +AL +   M + G++ DS T+ +
Sbjct: 240 KSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTS 299

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            L AC     +  G Q    ++        P   + MV+L  + G   EA
Sbjct: 300 SLTACAKLSSLGWGKQLHAQVIRSLP-CIDPYVASAMVELYAKCGCFKEA 348


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/521 (43%), Positives = 328/521 (62%), Gaps = 14/521 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNS-VSWSAMISGYIEC 114
           FQ++ I D  SWN++I+ + Q  +   A   F+ M      P+  + VS +++++   +C
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 115 GQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
               ++V  F +     ++ VV   A++  Y K G +D A K+F+ +  K++++WN +I 
Sbjct: 434 KN-SRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLIT 492

Query: 172 GYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           GY +N  A + +++ +MM     I PN  +  S+L   +H+ +LQ G ++H  V K+ L 
Sbjct: 493 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLH 552

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            D    T LI +Y KCG L DA  LF ++ ++  VTWNA+IS +  HG  EK L+LF +M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
            DEG+KPD +TFV+LL AC+H+G V+ G   F  ++ +YGI     HY CMVDLLGRAG 
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGY 671

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L  A   IK MP +P  +I+G LL ACR+H  ++L +FA+  LF ++  N  G YV L+N
Sbjct: 672 LEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNV-GYYVLLSN 730

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYA + KW+ V ++R   +E  + K PG+S IEV   V  F +G++ HP+   I+E+L+ 
Sbjct: 731 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRV 790

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L  +MK  GY+PD  F L  V E+ KE +L  HSE+LAIAFG+I  P  +PIR+FKNLRV
Sbjct: 791 LTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRV 850

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH ATK+IS I +REI+VRD+ RFHHFKDG CSCGDYW
Sbjct: 851 CGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 6/261 (2%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMI 108
           N  DV  +   F ++P KD  +WN+MIS +V   +  +A   F  L +  +    +    
Sbjct: 163 NLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 222

Query: 109 SGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                CG L     +    FK+    +V    ++I  Y +FG   +A  LFD+MP +++ 
Sbjct: 223 PVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 282

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNAMI+G ++N  A   L +L  M   GI+ N  ++ S+L  C  L  +     +H  V
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K  L  D      LI+MY K G+LEDA K F ++   DVV+WN++I+ Y Q+     A 
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 285 RLFDKMKDEGMKPDSITFVAL 305
             F KM+  G +PD +T V+L
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSL 423



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 4/186 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLR 187
           V+S+   T +++ Y   G V L+   FD++P K++ TWN+MI+ YV N    + +    +
Sbjct: 148 VQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQ 207

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +++   IRP+  +   VL  C  L     G+++H   FK     +      LI MY + G
Sbjct: 208 LLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFG 264

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
               A  LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+K + +T V++L 
Sbjct: 265 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 308 ACNHAG 313
            C   G
Sbjct: 325 VCPQLG 330



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 42/305 (13%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC--ILLNSDDVVAAFD 60
           VK  ++WN+++ G+A Q G   +A E+           Y +M  C  I+ N    V+   
Sbjct: 481 VKDVISWNTLITGYA-QNGLASEAIEV-----------YKMMEECKEIIPNQGTWVSILP 528

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            +  +           I G V K N+    D+F+A         + +I  Y +CG+L  A
Sbjct: 529 AYAHV---GALQQGMRIHGRVIKTNL--HLDVFVA---------TCLIDVYGKCGRLVDA 574

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVEN 176
           + LF   P +S V W A+IS +   G  +   KLF EM  + +    VT+ ++++    +
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            + E+G    R+M   GI+P+      +  LLG +    +  G      +   PL  D +
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYG-----FIKDMPLQPDAS 689

Query: 235 ALTPLISMYCKCGDLE---DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
               L+      G++E    A     E+  K+V  +  + + YA  GK E   ++    +
Sbjct: 690 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLAR 749

Query: 292 DEGMK 296
           + G+K
Sbjct: 750 ERGLK 754



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 138/342 (40%), Gaps = 68/342 (19%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVF--------KSPLCKDTTAL---------- 236
           R     L S        SS  LG Q  ++ F        K+P  K   AL          
Sbjct: 92  RRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSI 151

Query: 237 ---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKD 292
              T L+++Y   GD+  +   F +I +KDV TWN+MIS Y  +G   +A+  F + +  
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 293 EGMKPDSITFVALLLACN--------HAGLVDLGIQY----FDSMVNDY------GIAAK 334
             ++PD  TF  +L AC         H     LG Q+      S+++ Y      GIA  
Sbjct: 212 SEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 335 ---------PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL-D 384
                       +  M+  L + G   +A+D++ +M  +     F T++S   V  +L D
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 385 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           ++    ++L+ +        +V   L N+YA     +D  +    M   +VV     SW 
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVV-----SW- 385

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
              +++  +   D    + V+ H        +M+L G+ PDL
Sbjct: 386 --NSIIAAYEQND----DPVTAHGFF----VKMQLNGFQPDL 417


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/519 (42%), Positives = 326/519 (62%), Gaps = 9/519 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQK----KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            F+ +P KD  SWNT+I+G  +     + +   R++  A  + +S + S+++    E   
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 117 LDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           + K  E+   +  +     V   +++I  Y K  +V  + ++F  +  ++ ++WN++IAG
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+N   ++GLK  R M+   I+P + S SS++  C+HL++L LGKQ+H  + ++   ++
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 435

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               + L+ MY KCG++  A ++F  ++ +D+V+W AMI G A HG    A+ LF++MK 
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKT 495

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG++P+ + F+A+L AC+HAGLVD   +YF+SM  D+GIA   +HY  + DLLGRAG+L 
Sbjct: 496 EGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLE 555

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA D I  MP  P  +++ TLLSACRVHK +D+AE  A  +  ++P N  G Y+ LANIY
Sbjct: 556 EAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKN-TGAYILLANIY 614

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           +A ++W + A+ R S++   + K P  SWIEV   V+ F +GD  HP    I E ++ L 
Sbjct: 615 SAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLM 674

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           + M+  GYVPD     H V EE K+ L+  HSE+LAI FG+I  P GT IRV KNLRVC 
Sbjct: 675 ELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCT 734

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH ATK+IS I  REI+VRD +RFHHFK+GTCSCGDYW
Sbjct: 735 DCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 134/270 (49%), Gaps = 4/270 (1%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           VD   K+F+ MP K+LV+WN +IAG   N    + L ++R M G  ++P++ +LSSVL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
            +    +  GK++H    +  L  +    + LI MY KC  + D+ ++F  +  +D ++W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           N++I+G  Q+G  ++ L+ F +M    +KP S +F +++ AC H   + LG Q     + 
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYIT 428

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR-LDLA 386
             G        + +VD+  + G +  A  +  +M  +   + +  ++  C +H   LD  
Sbjct: 429 RNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHGHALDAI 487

Query: 387 E-FAAMNLFNLNPANAAGCYVQLANIYAAM 415
           E F  M    + P   A   V  A  +A +
Sbjct: 488 ELFEQMKTEGIEPNYVAFMAVLTACSHAGL 517



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 45/255 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---- 53
           M  K  V+WN+++AG A+       L   +E+     +PD  + + +L  I  N D    
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319

Query: 54  ------------------------------DVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                                          VV ++  F  L  +D  SWN++I+G VQ 
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 84  ----KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAW 135
               + +   R + +A  +  S S+S+++        L    +L     +    +++   
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 439

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           ++++  Y K G +  A ++FD M  +++V+W AMI G   +  A D ++L   M   GI 
Sbjct: 440 SSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIE 499

Query: 196 PNASSLSSVLLGCSH 210
           PN  +  +VL  CSH
Sbjct: 500 PNYVAFMAVLTACSH 514



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y     L D+ +LF  +     + W ++I  Y  HG   K+L  F  M   G+ PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 302 FVALLLACNHAGLVDLGI 319
           F ++L AC  A L+DL +
Sbjct: 111 FPSVLKAC--AMLMDLNL 126



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 42/93 (45%)

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           +LF+ +     + W ++I  Y  +      L     M+  G+ P+ +   SVL  C+ L 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
            L LG+ +H  + +  L  D      L++MY K
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 155


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 352/610 (57%), Gaps = 51/610 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           WN+++ G++       DA E++ ++    V      L C+L  +   V   +  +R+  +
Sbjct: 137 WNAIIRGYSSHN-FFGDAIEMYSRMQASGVNPDGFTLPCVL-KACSGVPVLEVGKRVHGQ 194

Query: 69  --------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                   D    N +++ + +   + +AR +F  + ++N VSW++MISGY + G   +A
Sbjct: 195 IFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEA 254

Query: 121 VELFK-----------VAPVKSVVAWT----------------------------AMISG 141
           + +F            +A V  + A+T                            ++ + 
Sbjct: 255 LRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAM 314

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G+V +A   FD+M   N++ WNAMI+GY +N +  + + L + MI   IR ++ ++
Sbjct: 315 YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITV 374

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            S +L C+ + SL L K +   + K+    D    T LI M+ KCG ++ A ++F     
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD 434

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           KDVV W+AMI GY  HG+G+ A+ LF  MK  G+ P+ +TFV LL ACNH+GLV+ G + 
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL 494

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           F SM   YGI A+  HY C+VDLLGR+G L EA D I  MP +P  +++G LL AC++++
Sbjct: 495 FHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYR 553

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            + L E+AA  LF+L+P N  G YVQL+N+YA+ + WD VA++R+ M+E  + K  GYS 
Sbjct: 554 HVTLGEYAAEQLFSLDPFNT-GHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSL 612

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 501
           IE+   +  FR GD+ HP    I E+L+ LE+R+K AG++P +E  LH + +E KE+ L 
Sbjct: 613 IEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLC 672

Query: 502 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
            HSE+LAIA+GLI    GT +R+ KNLR C +CH ATK IS +  REI+VRD  RFHHFK
Sbjct: 673 NHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFK 732

Query: 562 DGTCSCGDYW 571
           +G CSC DYW
Sbjct: 733 NGVCSCRDYW 742



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 150/317 (47%), Gaps = 19/317 (5%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +F+  LP+    S     SGF      +   D  +     N +    ++SG +E G L  
Sbjct: 48  NFYSSLPLPLDHSDYIPYSGFDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFL-- 105

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                           T  ++     G++  A K+FDE P  ++  WNA+I GY  +++ 
Sbjct: 106 ---------------VTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFF 150

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            D +++   M   G+ P+  +L  VL  CS +  L++GK+VH  +F+     D      L
Sbjct: 151 GDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGL 210

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +++Y KCG +E A  +F  +  +++V+W +MISGY Q+G   +ALR+F +M+   +KPD 
Sbjct: 211 VALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDW 270

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           I  V++L A      ++ G +     V   G+  +PD    +  +  + G+++ A     
Sbjct: 271 IALVSVLRAYTDVEDLEQG-KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFD 329

Query: 360 KMPFKPQPAIFGTLLSA 376
           +M   P   ++  ++S 
Sbjct: 330 QMEI-PNVMMWNAMISG 345



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 156/319 (48%), Gaps = 13/319 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW 104
           N  ++  A   F   P      WN +I G+        A +++  M      P+  ++  
Sbjct: 115 NIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPC 174

Query: 105 SAMISGYIECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
                  +   ++ K V  ++F++     V     +++ Y K G+V+ A  +F+ +  +N
Sbjct: 175 VLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRN 234

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+W +MI+GY +N    + L++   M    ++P+  +L SVL   + +  L+ GK +H 
Sbjct: 235 IVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHG 294

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            V K  L  +   L  L +MY KCG +  A   F +++  +V+ WNAMISGYA++G   +
Sbjct: 295 CVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNE 354

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A+ LF +M  + ++ DSIT  + +LAC   G +DL  ++    +N           T ++
Sbjct: 355 AVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTALI 413

Query: 343 DLLGRAGKLVEAVDLIKKM 361
           D+  + G    +VDL +++
Sbjct: 414 DMFAKCG----SVDLAREV 428



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI-----MLSCILLNSDDV 55
           M +   + WN++++G+AK  G   +A  LF ++   ++ + +I     +L+C  + S D+
Sbjct: 331 MEIPNVMMWNAMISGYAKN-GYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDL 389

Query: 56  VAAF-DFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                D+  +   ++    NT +I  F +  ++  AR++F    +K+ V WSAMI GY  
Sbjct: 390 AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGL 449

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G+   A++LF       V    V +  +++     G V+   +LF  M    +   +  
Sbjct: 450 HGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQH 509

Query: 170 IAGYVENSWAEDGL-KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            A  V+       L +    +  + I P  S   ++L  C     + LG+   + +F 
Sbjct: 510 YACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFS 567


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/575 (41%), Positives = 341/575 (59%), Gaps = 10/575 (1%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCI--LLNSDDVVAA 58
           + + WN ++  +A   G    A +L+  +     +P+  +Y  +L     LL  +D V  
Sbjct: 73  SVILWNQIIRAYA-WNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKN-MAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
               +   ++      T +  F  K   + +A+ LF +M  ++ V+W+AMI+G    G  
Sbjct: 132 HSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLC 191

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDL-AEKLFDEMPTKNLVTWNAMIAGYVEN 176
           D AV+L      + +   ++ I G +   +  L A K+FD M  +N V+W+AMI GYV +
Sbjct: 192 DDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 251

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              ++ L + RMM   GI P+ +++  VL  CSHL++LQ G   H  +       DT   
Sbjct: 252 DCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC 311

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             LI MY KCG +  A ++F  + R D+V+WNAMI GY  HG G +AL LF  +   G+K
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 371

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           PD ITF+ LL +C+H+GLV  G  +FD+M  D+ I  + +H  CMVD+LGRAG + EA  
Sbjct: 372 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 431

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            I+ MPF+P   I+  LLSACR+HK ++L E  +  + +L P  + G +V L+NIY+A  
Sbjct: 432 FIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIYSAAG 490

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
           +WDD A IR++ K+  + K+PG SWIE+  +VH F  GD+ H +L  I+ KL+EL   MK
Sbjct: 491 RWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMK 550

Query: 477 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
             GY  +  F    V EE KEQ+LL+HSEKLAIAFG++ +  G PI V KNLRVCGDCH 
Sbjct: 551 RLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHT 610

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A K+++ I KREI VRD  RFHHFK+GTC+CGD+W
Sbjct: 611 AIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 96/169 (56%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y+   +V LA +LFDE+P  +++ WN +I  Y  N   +  + L   M+ LG+RPN  + 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             VL  CS L +++ G ++H       L  D    T L+  Y KCG L +A +LF  +  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +DVV WNAMI+G + +G  + A++L  +M++EG+ P+S T V +L  C 
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ 221



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C    SL   K++HQ   K+    D++ L  L  +Y  C  +  A +LF EI    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V+ WN +I  YA +G  + A+ L+  M   G++P+  T+  +L AC+    ++ G++   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           S    +G+ +     T +VD   + G LVEA  L   M  +   A +  +++ C ++   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLC 191

Query: 384 D 384
           D
Sbjct: 192 D 192


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/619 (39%), Positives = 358/619 (57%), Gaps = 57/619 (9%)

Query: 8    NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQR 64
            +WNSV+A  A+  G   +A   F  + +  ++       C + +     D+V+     Q+
Sbjct: 1982 SWNSVIADLARG-GDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 2040

Query: 65   LPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              +     D    + +I  + +   +  AR LF  +P +N VSW++MI+GY++  Q D A
Sbjct: 2041 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 2100

Query: 121  VELFK-------------VAPVKSVVAWTAM-----ISG--------------------- 141
            + LFK               P+ SVV  + +     +SG                     
Sbjct: 2101 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 2160

Query: 142  --------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-GL 192
                    Y K G+  +++K+FD M  K+ ++WN+MIA Y ++  + + L++   M+  +
Sbjct: 2161 VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHV 2220

Query: 193  GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            G+R NA +LS+VLL C+H  +L+ GK +H  V K  L  +    T +I MYCKCG +E A
Sbjct: 2221 GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMA 2280

Query: 253  CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             K F  ++ K+V +W AM++GY  HG+ ++AL +F KM   G+KP+ ITFV++L AC+HA
Sbjct: 2281 KKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 2340

Query: 313  GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
            GLV+ G  +F++M + Y I    +HY CMVDL GRAG L EA +LIK+M  KP   ++G+
Sbjct: 2341 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 2400

Query: 373  LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
            LL ACR+HK +DL E AA  LF L+P N  G YV L+N+YA   +W DV R+R+ MK   
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFELDPDN-CGYYVLLSNLYADAGRWADVERMRMLMKNRQ 2459

Query: 433  VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
            +VK PG+S +E+   VH F  GD+ HP    I++ L++L   ++  GYVP++   LH V 
Sbjct: 2460 LVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVD 2519

Query: 493  EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            EE KE +L  HSEKLA+AFG++    GT I + KNLRVCGDCH   K IS +  R+ +VR
Sbjct: 2520 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVR 2579

Query: 553  DTTRFHHFKDGTCSCGDYW 571
            D+ RFHHFKDG CSCGDYW
Sbjct: 2580 DSKRFHHFKDGVCSCGDYW 2598



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 153/255 (60%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +I  Y +CG    A+++F+   V++VV+WT +ISG +  G +  A ++FDE+P+KN+V+W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            AMI GY+ N   E+ L+L + M    I PN  ++ S++  C+ +  L LG+ +H    K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + +       T LI MY KCG ++DA ++F  + RK + TWN+MI+    HG G++AL L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+   +KPD+ITF+ +L AC H   V  G  YF  M   YGIA  P+HY CM +L  
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 347 RAGKLVEAVDLIKKM 361
           R+  L EA    K++
Sbjct: 406 RSNNLDEAFKSTKEV 420



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 43/298 (14%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y   G++  A  LF ++      TWN +I     N  +E  L L + M+  GI  +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---------- 247
             +   V+  C++  S+ LGK VH  + K     D      LI  Y KCG          
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 248 ---------------------DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                                DL++A ++F EI  K+VV+W AMI+GY ++ + E+AL L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI--AAKPDHY--TCMV 342
           F +M+ E + P+  T V+L+ AC   G++ LG       ++DY I    +   Y  T ++
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----RGIHDYAIKNCIEIGVYLGTALI 299

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
           D+  + G + +A+++ + MP K  P  + +++++  VH   +  L  F+ M   N+ P
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKSLPT-WNSMITSLGVHGLGQEALNLFSEMERVNVKP 356



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 149  DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            +LA   +  +   N+ +WN++IA       + + L+    +  LG+ P  SS    +  C
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025

Query: 209  SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
            S L  L  G+  HQ  F      D    + LI MY KCG L+DA  LF EI  ++VV+W 
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 2085

Query: 269  AMISGYAQHGKGEKALRLFDKMKDE--------GMKPDSITFVALLLACN 310
            +MI+GY Q+ + + AL LF    +E         +  DS+  V++L AC+
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 2135



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 128/259 (49%), Gaps = 16/259 (6%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G  + A ++F+K+   +VVS+  ++S  L++  D+  A   F  +P K+  S
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG-LISCGDLQEARRIFDEIPSKNVVS 224

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECG--QLDKAVELFKV 126
           W  MI+G+++ +   +A +LF  M  +    N  +  ++I    E G   L + +  + +
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 127 APVKSVVAW--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                +  +  TA+I  Y K G +  A ++F+ MP K+L TWN+MI     +   ++ L 
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLI 240
           L   M  + ++P+A +   VL  C H+ +++ G     ++ Q    +P+ +    +T L 
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL- 403

Query: 241 SMYCKCGDLEDACKLFLEI 259
             Y +  +L++A K   E+
Sbjct: 404 --YARSNNLDEAFKSTKEV 420



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 15/233 (6%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C +   L   +Q+H  + +S L  D      LI +Y   G +  A  LF +IQ   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
             TWN +I     +G  E+AL L+  M  +G+  D  TF  ++ AC +   +DLG     
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVH 380
           S++  YG +        ++D   + G    A+ + +KM  +       +   L+S     
Sbjct: 150 SLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCG--- 205

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
              DL E  A  +F+  P+     +  + N Y   ++ ++   +   M+  N+
Sbjct: 206 ---DLQE--ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVA-- 57
            M  K  ++WNS++A +A Q G   +A E+F  + +   V YN + LS +LL      A  
Sbjct: 2185 MEEKDDISWNSMIAVYA-QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243

Query: 58   AFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            A        IK    +N     ++I  + +   +  A+  F  M EKN  SW+AM++GY 
Sbjct: 2244 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 2303

Query: 113  ECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NL 163
              G+  +A+++F    +     + + + ++++     G V+     F+ M  K      +
Sbjct: 2304 MHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGI 2363

Query: 164  VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
              +  M+  +       +   L++ M    ++P+     S+L  C    ++ LG+   Q 
Sbjct: 2364 EHYGCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWGSLLGACRIHKNVDLGEIAAQK 2420

Query: 224  VFKSPLCKDTTALTPLIS-MYCKCGDLEDACKLFLEIQRKDVV 265
            +F+  L  D      L+S +Y   G   D  ++ + ++ + +V
Sbjct: 2421 LFE--LDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLV 2461


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 337/558 (60%), Gaps = 8/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI-KDTASWNTMI 77
           G++  A+ +FD+  + DVV++N+M+S    +   D+ +  FD  +R+ +   + +  +++
Sbjct: 168 GEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVL 227

Query: 78  SGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S   + K++   + +   +     E   V  +A+I  Y  CG +D A+ +F     + V+
Sbjct: 228 SACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVI 287

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +WTA+++G+   G+V LA   FD+MP ++ V+W AMI GY++ +  ++ L L R M    
Sbjct: 288 SWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAAN 347

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+P+  ++ S+L  C+HL +L+LG+ +   + K+ +  D+     LI MY  CG++E A 
Sbjct: 348 IKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAI 407

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  +  +D ++W A+I G A +G GE+AL +F +M    + PD +T + +L AC H+G
Sbjct: 408 RIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSG 467

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           +VD G ++F  M   +GI     HY CMVDLLGRAG L EA ++IK MP KP   ++G+L
Sbjct: 468 MVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSL 527

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACRVH+  ++AE AA  +  L P N A  YV L NIYAA  +W+ +  +R  M +  +
Sbjct: 528 LGACRVHRDEEMAEMAAQQILELEPENGA-VYVLLCNIYAACNRWEKLHEVRKLMMDRGI 586

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG S IE+   VHEF +GD+VHP+   I+ KL E+   +K AGY PD       +GE
Sbjct: 587 KKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGE 646

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE  +  HSEKLAIAFGLI    G  IR+ KNLR+C DCH   K +S +  RE+IVRD
Sbjct: 647 EEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRD 706

Query: 554 TTRFHHFKDGTCSCGDYW 571
            TRFHHF+ G+CSC DYW
Sbjct: 707 RTRFHHFRHGSCSCKDYW 724



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 172/383 (44%), Gaps = 46/383 (12%)

Query: 38  VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           +V   I+  C      D+  A   F  +P  +   WN MI G+ +      A  ++  M 
Sbjct: 52  IVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEML 111

Query: 98  EK----NSVSWSAMISGY-----IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
           E+    +  ++  ++  +     ++CG+ +    + K+    +V    A+I  Y   G+V
Sbjct: 112 ERGVMPDEYTYPFLLKRFTRDTAVKCGR-ELHDHIVKLGFSSNVFVQNALIHLYSLSGEV 170

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            +A  +FD     ++VTWN MI+GY  +   ++ +KL   M  + + P++ +L SVL  C
Sbjct: 171 SVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSAC 230

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV---- 264
           S L  L +GK+VH+ V    +         LI MY  CGD++ A  +F  ++ +DV    
Sbjct: 231 SKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWT 290

Query: 265 ---------------------------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
                                      V+W AMI GY Q  + ++ L LF +M+   +KP
Sbjct: 291 AIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKP 350

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D  T V++L AC H G ++LG ++  + ++   I         ++D+    G + +A+ +
Sbjct: 351 DEFTMVSILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRI 409

Query: 358 IKKMPFKPQ----PAIFGTLLSA 376
              MP + +      IFG  ++ 
Sbjct: 410 FNAMPHRDKISWTAVIFGLAING 432



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           + G ++ A  +FD MP  N   WN MI GY         + +   M+  G+ P+  +   
Sbjct: 65  ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPF 124

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L   +  ++++ G+++H  + K     +      LI +Y   G++  A  +F    + D
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VVTWN MISGY +  + +++++LFD+M+   + P SIT V++L AC+    +++G +   
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVG-KRVH 243

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
             V D  I         ++D+    G +  A+ +   M  K +  I  T +    V    
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNM--KSRDVISWTAI----VTGFT 297

Query: 384 DLAEFA-AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           +L +   A N F+  P      +  + + Y  + ++ +V  +   M+  N+
Sbjct: 298 NLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANI 348


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/522 (42%), Positives = 316/522 (60%), Gaps = 13/522 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  +  +D  +WN++ISG  Q+   A A  +F  M       + ++  ++ S   + G  
Sbjct: 227 FHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDG 286

Query: 118 DKAVELF-----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             A  L      +   V  ++A  A++  Y K   ++ A+++FD MP ++ V+WN +I G
Sbjct: 287 RSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITG 346

Query: 173 YVENSWAEDGL-KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           Y++N  A + + +   M    G++    +  SVL   SHL +LQ G ++H L  K  L  
Sbjct: 347 YMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV 406

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D    T LI +Y KCG L +A  LF ++ R+    WNA+ISG   HG G +AL LF +M+
Sbjct: 407 DVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQ 466

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG+KPD +TFV+LL AC+HAGLVD G  +FD M   Y I     HY CM D+LGRAG+L
Sbjct: 467 QEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQL 526

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA + I+ MP KP  A++G LL ACR+H  +++ + A+ NLF L+P N  G YV ++N+
Sbjct: 527 DEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN-VGYYVLMSNM 585

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV--HPELVSIHEKLK 469
           YA + KWD V  +R  ++  N+ K PG+S IEV   V+ F SG++   HP+   I  +L+
Sbjct: 586 YAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELR 645

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
            L  +++  GYV D  F L  V ++ KE +L  HSE+LAIAFG+I  P  TP+ ++KNLR
Sbjct: 646 SLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLR 705

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH ATKYIS I +REIIVRD+ RFHHFKDG CSCGD+W
Sbjct: 706 VCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 165/335 (49%), Gaps = 16/335 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A+  F  +  +D  +WN M+SG  +    A+A  LF  M  +    ++V+ S+++   + 
Sbjct: 122 AYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVL 181

Query: 114 CGQ----LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G     L   V   K    K +    A+I  Y K G ++ A+ +F  M  ++LVTWN++
Sbjct: 182 LGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+G  +       LK+ + M G G+ P+  +L S+    +     +  K +H  V +   
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 230 -CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              D  A   ++ MY K  ++E A ++F  +  +D V+WN +I+GY Q+G   +A+  + 
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 289 KM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLL 345
            M K EG+K    TFV++L A +H G +  G++     +    I    D Y  TC++DL 
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIK---IGLNVDVYVGTCLIDLY 418

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
            + GKL EA+ L +KMP +     +  ++S   VH
Sbjct: 419 AKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVH 452



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A+ L  V P  SV    +++  Y++FG++  A K+FDEM  +++  WNAM++G   N+ A
Sbjct: 93  ALRLGLVRP--SVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARA 150

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + + L   M+G G+  +  ++SSVL  C  L    L   +H    K  L K+      L
Sbjct: 151 AEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNAL 210

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I +Y K G LE+A  +F  ++ +D+VTWN++ISG  Q G+   AL++F  M+  G+ PD 
Sbjct: 211 IDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDV 270

Query: 300 ITFVALLLACNHAG 313
           +T V+L  A    G
Sbjct: 271 LTLVSLASAIAQGG 284



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 57/334 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSD--- 53
           M  +  V WNS+++G  +QRG+   A ++F  +      PDV++   + S I    D   
Sbjct: 230 MECRDLVTWNSIISG-CEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRS 288

Query: 54  --------------------------------DVVAAFDFFQRLPIKDTASWNTMISGFV 81
                                           ++ AA   F  +P++D+ SWNT+I+G++
Sbjct: 289 AKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYM 348

Query: 82  QKKNMAKARDLFLAMPEKNSV-----SWSAMISGYIECGQLDKAVEL----FKVAPVKSV 132
           Q     +A + +  M +   +     ++ +++  Y   G L + + +     K+     V
Sbjct: 349 QNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDV 408

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              T +I  Y K GK+  A  LF++MP ++   WNA+I+G   +    + L L   M   
Sbjct: 409 YVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQE 468

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQ---VHQLVFK-SPLCKDTTALTPLISMYCKCGD 248
           GI+P+  +  S+L  CSH   +  G+    V Q+ +   P+ K    +  ++    + G 
Sbjct: 469 GIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLG---RAGQ 525

Query: 249 LEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGE 281
           L++A      +  K D   W A++     HG  E
Sbjct: 526 LDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVE 559


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/558 (41%), Positives = 349/558 (62%), Gaps = 8/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G++ +A+ +FDK+   DVV+++IM+   C     +D +  F+  +   ++ D    +T++
Sbjct: 171 GRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVL 230

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S   +  N++  + +   + E N V      SA+++ Y  CG +D A+ LF+    K++V
Sbjct: 231 SACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLV 290

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A TAM++GY K G+++ A  +F++M  K+LV W+AMI+GY E+   ++ L L   M  LG
Sbjct: 291 ASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLG 350

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+P+  ++ SV+  C+HL +L   K +H  V K+           LI MY KCG LE A 
Sbjct: 351 IKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERAR 410

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F ++ RK+V++W  MIS +A HG    ALR F +M+DE ++P+ ITFV +L AC+HAG
Sbjct: 411 RIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAG 470

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+ G + F SM+N++ I  K  HY CMVDL GRA  L EA++L++ MP  P   I+G+L
Sbjct: 471 LVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSL 530

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           ++ACRVH  ++L EFAA  L  L+P +  G +V L+NIYA  ++W+DV ++R  MK   +
Sbjct: 531 MAACRVHGEIELGEFAAKRLLELDP-DHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGI 589

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G S  E+   +HEF   DR H     I+EKL E+  ++KL GY P+    L  + E
Sbjct: 590 SKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEE 649

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E K++++L+HSEKLA+ +GL++   G+ IR+ KNLRVC DCH   K  S + +REI+VRD
Sbjct: 650 EEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRD 709

Query: 554 TTRFHHFKDGTCSCGDYW 571
            TRFHH+KDG CSC DYW
Sbjct: 710 RTRFHHYKDGVCSCKDYW 727



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 32/260 (12%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y   G++  A  +FD+M  +++VTW+ MI GY ++    D L L   M    + 
Sbjct: 161 TGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVE 220

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL------ 249
           P+   LS+VL  C    +L  GK +H  + ++ +  D    + L++MY  CG +      
Sbjct: 221 PDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNL 280

Query: 250 -------------------------EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                                    E+A  +F ++ +KD+V W+AMISGYA+    ++AL
Sbjct: 281 FEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEAL 340

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF++M+  G+KPD +T ++++ AC H G +D   ++    V+  G          ++++
Sbjct: 341 NLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEM 399

Query: 345 LGRAGKLVEAVDLIKKMPFK 364
             + G L  A  +  KMP K
Sbjct: 400 YAKCGSLERARRIFDKMPRK 419



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF A+    S++    +   I   +LD++  L     VK V++  A+ S       +D A
Sbjct: 26  LFSALSSATSLTHLKQVHAQILRSKLDRSTSLL----VKLVISSCALSSS------LDYA 75

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
             +F+ +P       N  +     +   E  L +   M   G+  +  S   +L   S +
Sbjct: 76  LSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRV 135

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
            SL  G ++H L  K     D    T L+ MY  CG + +A  +F ++  +DVVTW+ MI
Sbjct: 136 KSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMI 195

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            GY Q G    AL LF++MK+  ++PD +    +L AC  AG +  G    D ++ +  I
Sbjct: 196 DGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMEN-NI 254

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              P   + +V +    G +  A++L +KM  K
Sbjct: 255 VVDPHLQSALVTMYASCGSMDLALNLFEKMTPK 287



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 80/153 (52%), Gaps = 12/153 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  +AK  G L+ A+ +FDK+P+ +V+S+  M+S   ++  D  +A  FF ++  ++
Sbjct: 394 NALIEMYAKC-GSLERARRIFDKMPRKNVISWTCMISAFAMHG-DAGSALRFFHQMEDEN 451

Query: 70  TASWNTMISGFVQKKNMA----KARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKA 120
                    G +   + A    + R +F +M  +++++     +  M+  +     L +A
Sbjct: 452 IEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREA 511

Query: 121 VELFKVAPVK-SVVAWTAMISGYMKFGKVDLAE 152
           +EL +  P+  +V+ W ++++     G+++L E
Sbjct: 512 LELVEAMPLAPNVIIWGSLMAACRVHGEIELGE 544


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/618 (38%), Positives = 347/618 (56%), Gaps = 50/618 (8%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN--IMLSCILLNSDDV---- 55
           N K  ++WNS++ G++K R   + A EL  K+   D V  N   +L+ + +  +++    
Sbjct: 360 NEKNVISWNSMIGGYSKDR-DFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLK 418

Query: 56  ---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              +  +         D    N  ++G+ +  ++  A  +F  M  K   SW+A+I G++
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHV 478

Query: 113 ECGQLDKAVEL-------------FKVAPVKSVVA------------------------- 134
           + G   KA++L             F +A + S  A                         
Sbjct: 479 QNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEF 538

Query: 135 -WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              +++S Y++ GK+ LA+  FD M  KNLV WN MI G+ +N +  D L +   M+   
Sbjct: 539 ICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSK 598

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I P+  S+   L  CS +S+L+LGK++H    KS L + +     LI MY KCG +E + 
Sbjct: 599 IWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQ 658

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  +  K  VTWN +I+GY  HG G KA+ LF  M++ G +PDS+TF+ALL ACNHAG
Sbjct: 659 NIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAG 718

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV  G++Y   M + +GI  K +HY C+VD+LGRAG+L EA++L+ ++P KP   I+ +L
Sbjct: 719 LVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSL 778

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LS+CR ++ LD+ E  A  L  L P  A   YV ++N YA + KWD+V ++R  MKE  +
Sbjct: 779 LSSCRNYRDLDIGEKVANKLLELGPDKAEN-YVLISNFYARLGKWDEVRKMRQRMKEIGL 837

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G SWIE+G  V  F  GD    + + I +   ELEK++   GY PD    LH + E
Sbjct: 838 QKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEE 897

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           + K ++L  HSEKLAI+FGL+    GT +RV KNLR+C DCH A K +S I+KREIIVRD
Sbjct: 898 DEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRD 957

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHFK+G CSCGDYW
Sbjct: 958 NKRFHHFKNGFCSCGDYW 975



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 13/254 (5%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAMISGYIECGQLDKA 120
           K+   WN ++SG+++      A  +F+ M       P+  ++         +   +L +A
Sbjct: 158 KNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEA 217

Query: 121 VELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           V  F  K   +  V    A+I+ Y KFG V+ A K+FD+MP +NLV+WN+++   +EN  
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGV 277

Query: 179 AEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
            E+   L + ++    G+ P+ +++ +V+  C+    ++LG   H L  K  LC +    
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN 337

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGM 295
           + L+ MY KCG L +A  LF +   K+V++WN+MI GY++      A  L  KM+ ++ +
Sbjct: 338 SSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 296 KPDSITFVALLLAC 309
           K + +T + +L  C
Sbjct: 397 KVNEVTLLNVLPVC 410



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 60/400 (15%)

Query: 9   WNSVLAGFAKQRGKLKDAQELF-DKIPQPDVVSYNIMLSCIL--------LNSDDVVAAF 59
           WN++L+G+ +     +DA  +F + I   + V  N  L C++        +   + V  F
Sbjct: 163 WNALLSGYLRN-SLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGF 221

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
               ++ + D    N +I+ + +   +  A  +F  MP++N VSW++++   +E G  ++
Sbjct: 222 ALKTKV-LSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEE 280

Query: 120 AVELFK------------VAPVKSVVAWTA-----------------------------M 138
           +  LFK            VA + +V+   A                             +
Sbjct: 281 SYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSL 340

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGLGIRPN 197
           +  Y K G +  A  LFD    KN+++WN+MI GY ++       +LLR M +   ++ N
Sbjct: 341 LDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVN 399

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLF 256
             +L +VL  C         K++H    +    + D       ++ Y KCG L  A  +F
Sbjct: 400 EVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVF 459

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ K V +WNA+I G+ Q+G   KAL L+  M+  G++PD  T  +LL AC     + 
Sbjct: 460 CGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLS 519

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEA 354
            G +   SM+ +     + D + C  +V L  + GK++ A
Sbjct: 520 CGKEIHGSMLRN---GFELDEFICISLVSLYVQCGKILLA 556



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 4/204 (1%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLS 212
           +F+    KNL  WNA+++GY+ NS   D + +   MI L    P+  +L  V+  C  + 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
            ++LG+ VH    K+ +  D      LI+MY K G +E A K+F ++ ++++V+WN+++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 273 GYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
              ++G  E++  LF  +   DEG+ PD  T V ++  C   G V LG+  F  +    G
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLG 329

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEA 354
           +  +    + ++D+  + G L EA
Sbjct: 330 LCGELKVNSSLLDMYSKCGYLCEA 353



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 208 CSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
           C    ++++G+++H  +  SP    D   +T L++MY  C    D+C +F   +RK++  
Sbjct: 103 CGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFL 162

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           WNA++SGY ++     A+ +F +M       PD+ T   ++ AC   G+ D+ +      
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC--VGVYDVRL---GEA 217

Query: 326 VNDYGIAAK--PDHY--TCMVDLLGRAGKLVEAVDLIKKMP 362
           V+ + +  K   D +    ++ + G+ G +  AV +  KMP
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP 258


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/619 (39%), Positives = 358/619 (57%), Gaps = 57/619 (9%)

Query: 8    NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQR 64
            +WNSV+A  A+  G   +A   F  + +  ++       C + +     D+V+     Q+
Sbjct: 1109 SWNSVIADLARG-GDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 1167

Query: 65   LPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              +     D    + +I  + +   +  AR LF  +P +N VSW++MI+GY++  Q D A
Sbjct: 1168 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 1227

Query: 121  VELFK-------------VAPVKSVVAWTAM-----ISG--------------------- 141
            + LFK               P+ SVV  + +     +SG                     
Sbjct: 1228 LLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIG 1287

Query: 142  --------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-GL 192
                    Y K G+  +++K+FD M  K+ ++WN+MIA Y ++  + + L++   M+  +
Sbjct: 1288 VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHV 1347

Query: 193  GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            G+R NA +LS+VLL C+H  +L+ GK +H  V K  L  +    T +I MYCKCG +E A
Sbjct: 1348 GVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMA 1407

Query: 253  CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             K F  ++ K+V +W AM++GY  HG+ ++AL +F KM   G+KP+ ITFV++L AC+HA
Sbjct: 1408 KKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 1467

Query: 313  GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
            GLV+ G  +F++M + Y I    +HY CMVDL GRAG L EA +LIK+M  KP   ++G+
Sbjct: 1468 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 1527

Query: 373  LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
            LL ACR+HK +DL E AA  LF L+P N  G YV L+N+YA   +W DV R+R+ MK   
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFELDPDN-CGYYVLLSNLYADAGRWADVERMRMLMKNRQ 1586

Query: 433  VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
            +VK PG+S +E+   VH F  GD+ HP    I++ L++L   ++  GYVP++   LH V 
Sbjct: 1587 LVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVD 1646

Query: 493  EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            EE KE +L  HSEKLA+AFG++    GT I + KNLRVCGDCH   K IS +  R+ +VR
Sbjct: 1647 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVR 1706

Query: 553  DTTRFHHFKDGTCSCGDYW 571
            D+ RFHHFKDG CSCGDYW
Sbjct: 1707 DSKRFHHFKDGVCSCGDYW 1725



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 153/255 (60%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +I  Y +CG    A+++F+   V++VV+WT +ISG +  G +  A ++FDE+P+KN+V+W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            AMI GY+ N   E+ L+L + M    I PN  ++ S++  C+ +  L LG+ +H    K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + +       T LI MY KCG ++DA ++F  + RK + TWN+MI+    HG G++AL L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+   +KPD+ITF+ +L AC H   V  G  YF  M   YGIA  P+HY CM +L  
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 347 RAGKLVEAVDLIKKM 361
           R+  L EA    K++
Sbjct: 406 RSNNLDEAFKSTKEV 420



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 35/294 (11%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y   G++  A  LF ++      TWN +I     N  +E  L L + M+  GI  +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---------- 247
             +   V+  C++  S+ LGK VH  + K     D      LI  Y KCG          
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 248 ---------------------DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                                DL++A ++F EI  K+VV+W AMI+GY ++ + E+AL L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+ E + P+  T V+L+ AC   G++ LG    D  + +  I       T ++D+  
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTALIDMYS 303

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
           + G + +A+++ + MP K  P  + +++++  VH   +  L  F+ M   N+ P
Sbjct: 304 KCGSIKDAIEVFETMPRKSLPT-WNSMITSLGVHGLGQEALNLFSEMERVNVKP 356



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 149  DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            +LA   +  +   N+ +WN++IA       + + L+    +  LG+ P  SS    +  C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 209  SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
            S L  L  G+  HQ  F      D    + LI MY KCG L+DA  LF EI  ++VV+W 
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 1212

Query: 269  AMISGYAQHGKGEKALRLFDKMKDE--------GMKPDSITFVALLLACN 310
            +MI+GY Q+ + + AL LF    +E         +  DS+  V++L AC+
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 128/259 (49%), Gaps = 16/259 (6%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G  + A ++F+K+   +VVS+  ++S  L++  D+  A   F  +P K+  S
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG-LISCGDLQEARRIFDEIPSKNVVS 224

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECG--QLDKAVELFKV 126
           W  MI+G+++ +   +A +LF  M  +    N  +  ++I    E G   L + +  + +
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 127 APVKSVVAW--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                +  +  TA+I  Y K G +  A ++F+ MP K+L TWN+MI     +   ++ L 
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLI 240
           L   M  + ++P+A +   VL  C H+ +++ G     ++ Q    +P+ +    +T L 
Sbjct: 345 LFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL- 403

Query: 241 SMYCKCGDLEDACKLFLEI 259
             Y +  +L++A K   E+
Sbjct: 404 --YARSNNLDEAFKSTKEV 420



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C +   L   +Q+H  + +S L  D      LI +Y   G +  A  LF +IQ   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
             TWN +I     +G  E+AL L+  M  +G+  D  TF  ++ AC +   +DLG     
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           S++  YG +        ++D   + G    A+ + +KM
Sbjct: 150 SLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVA-- 57
            M  K  ++WNS++A +A Q G   +A E+F  + +   V YN + LS +LL      A  
Sbjct: 1312 MEEKDDISWNSMIAVYA-QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 1370

Query: 58   AFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            A        IK    +N     ++I  + +   +  A+  F  M EKN  SW+AM++GY 
Sbjct: 1371 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 1430

Query: 113  ECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NL 163
              G+  +A+++F    +     + + + ++++     G V+     F+ M  K      +
Sbjct: 1431 MHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGI 1490

Query: 164  VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
              +  M+  +       +   L++ M    ++P+     S+L  C    ++ LG+   Q 
Sbjct: 1491 EHYGCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWGSLLGACRIHKNVDLGEIAAQK 1547

Query: 224  VFKSPLCKDTTALTPLIS-MYCKCGDLEDACKLFLEIQRKDVV 265
            +F+  L  D      L+S +Y   G   D  ++ + ++ + +V
Sbjct: 1548 LFE--LDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLV 1588


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/639 (39%), Positives = 357/639 (55%), Gaps = 79/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDV------------V 56
           N++L  +AK  G  + A  +F +IP+PD+VS+N ++  C+L   +D+            V
Sbjct: 227 NALLDMYAKS-GCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRV 285

Query: 57  AAFDFFQRLPIKDTASWNT-------------------------MISGFVQKKNMAKARD 91
           A   F     +K  A+                            +I  + +   +  AR 
Sbjct: 286 APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARM 345

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----------KVAPVKSVVAWTA---- 137
           +F  MP K+ + W+++ISGY  CG   +A+ LF              + +++  TA    
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQA 405

Query: 138 -----------MISGYM-----------KFGKVDLAE---KLFDEMPTKNLVTWNAMIAG 172
                      + SGY             +GK  L E   K+F+  P ++LV + +MI  
Sbjct: 406 NGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITA 465

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +    E+ LK+   M    I+P+A   SS+   C++LS+ + GKQ+H  V K  L  D
Sbjct: 466 YSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSD 525

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             A   L++MY KCG ++DA  +F EI  + +V+W+AMI G AQHG G KAL+LF +M  
Sbjct: 526 VFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLK 585

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+ P+ IT V++L ACNHAGLV    ++F  M   +GI    +HY CMVD+LGR G+L 
Sbjct: 586 NGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLD 645

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA+ L+K+MPF+   A++G LL A R+HK ++L   AA  L  L P   +G ++ LANIY
Sbjct: 646 EAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEP-EKSGTHILLANIY 704

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A+   WD+VA++R SMK + V K PG SWIE+   V+ F  GDR HP    I+ KL +L 
Sbjct: 705 ASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLR 764

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           +R+  AGYVP +E  LH V +  KEQLL  HSEKLA+AFGLI  P G PIRV KNLRVC 
Sbjct: 765 ERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCI 824

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K+IS +  REIIVRD  RFHHF+DG+CSCGDYW
Sbjct: 825 DCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM----PTKNLVTW 166
           Y +C     A +L   +    +V+W+A+ISGY++ G+ + A   + EM       N  T+
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 167 NAMIAGYVENSWAEDGLKLLRM-----MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++++ G       E G ++ R+     MI  GI PN  SLS+VL  C+ L     G +VH
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             + K     D  +   L+ MY K G  E A  +F EI + D+V+WNA+I+G   H K +
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--T 339
            AL+L  KM    + P   T  + L AC   GLV LG Q   +++    +  +PD +   
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK---MDMEPDSFVGV 328

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFK 364
            ++D+  + G L +A  +   MP K
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXK 353


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 339/560 (60%), Gaps = 35/560 (6%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           + V++ S+L G+ +  G L DA +LF ++P+ + +SY ++L    L++  V  A   F  
Sbjct: 111 SVVSFTSLLRGYVRH-GLLADAIQLFRQMPERNHISYTVLLGG-FLDAGRVDEARKLFDE 168

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P KD  +W  M+SG+ Q   + +AR LF  MP++N VSW+AM+SGY + GQ++ A +LF
Sbjct: 169 MPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLF 228

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-------------------- 164
           +V P ++ V+WTAM+ GY++ G+++ AE+LF+ MP   L                     
Sbjct: 229 EVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKS 288

Query: 165 -----------TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
                      TW+A+I  Y +N +  + L   R M+ +GIRPN  S+ S+L  C+ L+ 
Sbjct: 289 VFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAV 348

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L  G++VH  + +     D  A++ LI+MY KCG+L+ A ++F   + KDVV WN+MI+G
Sbjct: 349 LDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITG 408

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           YAQHG GE+AL +FD M+  GM PD IT++  L AC++ G V  G   F+SM    GI  
Sbjct: 409 YAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKP 468

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
             +HY CMVDLLGRAG + EA+ LIK MP +P   I+G L+ ACR+HK  ++AE +A  L
Sbjct: 469 GLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKL 528

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
             L P N AG YV L++IY +  +W+D + +R  +   ++ K  G SWIE    VH F+S
Sbjct: 529 LELEPGN-AGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKS 587

Query: 454 GDRV-HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           GD + H E  SI + L++L+  +  +GY  D  F LH + +E K   L +HSE+ A+A+G
Sbjct: 588 GDVLAHQEHASILKMLEKLDGLLMESGYSADGSFVLHDIDDEQKTHSLRYHSERQAVAYG 647

Query: 513 LIKVPLGTPIRVFKNLRVCG 532
           L+K+P   PIRV KNLRVCG
Sbjct: 648 LLKIPEELPIRVMKNLRVCG 667



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 182/328 (55%), Gaps = 12/328 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQ-ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           M ++TT ++N++LAG+   R  L DA   +F ++P  D+ SYN ++S + L    +  A 
Sbjct: 43  MPLRTTASYNALLAGYF--RNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHTLPDAA 100

Query: 60  DFFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                +P   +  S+ +++ G+V+   +A A  LF  MPE+N +S++ ++ G+++ G++D
Sbjct: 101 AALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVD 160

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A +LF   P K VVAWTAM+SGY + G+VD A  LFDEMP +N+V+W AM++GY +N  
Sbjct: 161 EARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQ 220

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
                KL  +M       N  S +++L G      ++  +++   +   PL     A   
Sbjct: 221 VNLARKLFEVM----PERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLA----ACNG 272

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +I  + + G ++ A  +F  +  +D  TW+A+I  Y Q+    +AL  F +M   G++P+
Sbjct: 273 MIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPN 332

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMV 326
             + +++L  C    ++D G +   +M+
Sbjct: 333 YPSVISILTVCAALAVLDYGREVHGAML 360



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 140/269 (52%), Gaps = 29/269 (10%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I+   +  NM  AR  F AMP + + S++A+++GY      D A+ +F   P + + 
Sbjct: 21  NARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLA 80

Query: 134 AWTAMISG--YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           ++ A+ISG    +    D A  L       ++V++ +++ GYV +    D ++L R M  
Sbjct: 81  SYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQM-- 138

Query: 192 LGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               P  + +S +VLLG      L  G+  +  +L  + P  KD  A T ++S YC+ G 
Sbjct: 139 ----PERNHISYTVLLG----GFLDAGRVDEARKLFDEMP-AKDVVAWTAMLSGYCQVGR 189

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +++A  LF E+ +++VV+W AM+SGYAQ+G+   A +LF+ M +     + +++ A+L  
Sbjct: 190 VDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER----NEVSWTAMLFG 245

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
              AG ++   + F++M         PDH
Sbjct: 246 YIQAGRIEDAEELFNAM---------PDH 265


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/563 (39%), Positives = 327/563 (58%), Gaps = 53/563 (9%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG------ 110
           FF+ +  KD   WN M+SG+  K    KA ++F  M     + NS++ ++ +S       
Sbjct: 168 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSL 227

Query: 111 ------------------------------YIECGQLDKAVELFKVAPVKSVVAWTAM-- 138
                                         Y +C  ++ A   F +     +V+W AM  
Sbjct: 228 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 287

Query: 139 ISGYMKFG----------KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           ++G+ ++G          ++ +A  +F E+ T+++V WN++I+   ++  + + L LLR 
Sbjct: 288 VTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLRE 347

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M    +  N  ++ S L  CS L++L+ GK++HQ + +  L      L  LI MY +CG 
Sbjct: 348 MNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGS 407

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ + ++F  + ++D+V+WN MIS Y  HG G  A+ LF + +  G+KP+ ITF  LL A
Sbjct: 408 IQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSA 467

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H+GL++ G +YF  M  +Y +    + Y CMVDLL RAG+  E ++ I+KMPF+P  A
Sbjct: 468 CSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAA 527

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++G+LL ACR+H   DLAE+AA  LF L P  ++G YV +ANIY+A  +W+D A+IR  M
Sbjct: 528 VWGSLLGACRIHCNPDLAEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAAKIRCLM 586

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           KE  V K PG SWIEV   +H F  GD  HP +  I  K++ L   +K  GYVPD  F L
Sbjct: 587 KERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVL 646

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
             V E+ KE  L  HSEK+A+AFGLI    GTP+R+ KNLRVCGDCH ATK+IS +EKR+
Sbjct: 647 QDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRD 706

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           II+RD  RFHHF DG CSCGDYW
Sbjct: 707 IIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 103/183 (56%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           + ++  Y + G V+ A ++FD+M  +N+ +W A++  Y      E+ +KL  +M+  G+R
Sbjct: 49  SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 108

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+      V   CS L + ++GK V+  +       ++     ++ M+ KCG ++ A + 
Sbjct: 109 PDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 168

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F EI+ KDV  WN M+SGY   G+ +KAL +F KM  EG+KP+SIT  + + AC +  L+
Sbjct: 169 FEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLL 228

Query: 316 DLG 318
             G
Sbjct: 229 RHG 231



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 144/311 (46%), Gaps = 47/311 (15%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNT 75
           Q G ++DA+ +FDK+ + +V S+  ++   C L + ++ +  F       ++ D   +  
Sbjct: 57  QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 116

Query: 76  MISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +     + KN    +D++  M     E NS    +++  +I+CG++D A   F+    K 
Sbjct: 117 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 176

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V  W  M+SGY   G+   A                               L + R M+ 
Sbjct: 177 VFMWNIMVSGYTSKGEFKKA-------------------------------LNVFRKMVL 205

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLE 250
            G++PN+ +++S +  C++LS L+ G+++H    K   L  D      L+  Y KC  +E
Sbjct: 206 EGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVE 265

Query: 251 DACKLFLEIQRKDVVTWNAM--ISGYAQHGKGEKALRLFDKMK------DEGMKPDSITF 302
            A + F  I++ D+V+WNAM  ++G+ Q+G G+ AL  F +M        E    D + +
Sbjct: 266 VARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVW 325

Query: 303 VALLLACNHAG 313
            +++ AC  +G
Sbjct: 326 NSIISACAQSG 336



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 202 SSVLLGCSHLSSLQLGKQVH-QLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +S+L  C  L +L+LG QVH QLV     +C+     + L+ +YC+ G +EDA ++F ++
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLG--SRLLEVYCQTGCVEDARRMFDKM 71

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             ++V +W A++  Y   G  E+ ++LF  M +EG++PD   F  +  AC+      +G 
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             +D M++  G          ++D+  + G++  A    +++ FK
Sbjct: 132 DVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 328/552 (59%), Gaps = 42/552 (7%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V  A   F     +D  S+  MI+G+  + NM KA+ +F  +P K+ VSW+AMISGY E 
Sbjct: 129 VEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188

Query: 115 GQLDKAVELFK------VAPVKSVVA--------------------W------------- 135
           G+  +A+ELF       V P +S +A                    W             
Sbjct: 189 GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLV 248

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A+I  Y K G+++ A  LF+ +  K++++WN +I GY   +  ++ L + + M+ LG  
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDAC 253
           PN  ++ S+L  C+HL ++ +G+ +H  + K    +  +T+  T LI MY KCG++E A 
Sbjct: 309 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAAN 368

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  I  K + + NAMI G+A HG+ + A  L  +MK +G++PD ITFV LL AC+HAG
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAG 428

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L DLG + F SM  DY I  K +HY CM+DLLGR+G   EA +LI  M  +P   I+G+L
Sbjct: 429 LSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSL 488

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L AC++HK L+L E  A  L  + P N  G YV L+NIYA   +WDDVAR+R  + +  +
Sbjct: 489 LKACKIHKNLELGELIAQKLMKIEPKNP-GSYVLLSNIYATSARWDDVARVRTLLNDKGL 547

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+PG S IE+ ++VHEF  GD+ HP+   I++ L+E++  +   G+V D    L  + E
Sbjct: 548 KKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEE 607

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E+KE  L +HSEKLAIAFGLI    GT +R+ KNLRVC +CH ATK IS I KREII RD
Sbjct: 608 ELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARD 667

Query: 554 TTRFHHFKDGTC 565
            +RFHHFKDG C
Sbjct: 668 RSRFHHFKDGMC 679



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 223/457 (48%), Gaps = 51/457 (11%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA--FDFFQRLPIKDTASWNTMISGFVQK 83
           A  +F  I +P+ +S+N M+    L+SD + A   + +   L +   +     +     K
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 84  KNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
              A+      A   K  ++      +++IS Y + G ++ A ++F  +  + VV++TAM
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I+GY   G +D A+K+FDE+P K++V+WNAMI+GY E    ++ L+L   M+ + ++P+ 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S++++VL  C+H  +++LG+Q+H  +       +   +  LI +Y KCG++E A  LF  
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +Q KDV++WN +I GYA     ++AL +F +M   G  P+ +T +++L AC H G +D+G
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330

Query: 319 I---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV----------------------- 352
                Y D  +   GI       T ++D+  + G +                        
Sbjct: 331 RWIHVYIDKKLK--GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388

Query: 353 --------EAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAE--FAAMNL-FNLNP 398
                    A DL+ +M     +P    F  LLSAC      DL    F +M L + + P
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP 448

Query: 399 A-NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
                GC + L       K+ +++    ++M+ + V+
Sbjct: 449 KLEHYGCMIDLLGRSGLFKEAEELIN-SMTMEPDGVI 484



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F  +   N ++WN MI G+  +S     L L   MI LG+ PN+ +   +
Sbjct: 25  FHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFL 84

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
              C+   + Q GKQ+H  + K  L  D    T LISMY + G +EDA K+F     +DV
Sbjct: 85  FKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144

Query: 265 VTWNAMISGYAQHGKGEK-------------------------------ALRLFDKMKDE 293
           V++ AMI+GYA  G  +K                               AL LF++M   
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            +KPD  T   +L  C H+G V+LG Q   S ++++G  +       ++DL  + G++  
Sbjct: 205 DVKPDESTMATVLSTCTHSGNVELGRQ-IHSWIDNHGFGSNLKLVNALIDLYSKCGEMER 263

Query: 354 AVDLIKKMPFK 364
           A  L + + +K
Sbjct: 264 AHGLFEGLQYK 274



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 168/398 (42%), Gaps = 67/398 (16%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSCI--------- 48
           +K  V+WN++++G+A + G+ K+A ELF+++ + DV         ++ +C          
Sbjct: 172 IKDVVSWNAMISGYA-EIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGR 230

Query: 49  ----------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                           L+N+         ++  A   F+ L  KD  SWNT+I G+    
Sbjct: 231 QIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYIN 290

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
           +  +A  +F  M       N V+  +++      G +D  + + ++    +K ++     
Sbjct: 291 HHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSL 350

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A ++FD +  K+L + NAMI G+  +  A+    LL  M   GI
Sbjct: 351 QTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGI 410

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH     LG++    +FKS        + P +  Y    DL     
Sbjct: 411 EPDDITFVGLLSACSHAGLSDLGRK----IFKSMTLD--YRIEPKLEHYGCMIDLLGRSG 464

Query: 255 LFLEIQ--------RKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVAL 305
           LF E +          D V W +++     H   E    +  K MK E   P S   ++ 
Sbjct: 465 LFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSN 524

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + A + A   D  +    +++ND G+   P   +  +D
Sbjct: 525 IYATS-ARWDD--VARVRTLLNDKGLKKVPGCSSIEID 559



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 20/243 (8%)

Query: 1   MNVKTTVNWNSVLAGFA---KQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVV 56
           +  K  ++WN+++ G+A     +  L   QE+      P DV   +I+ +C  L + D+ 
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330

Query: 57  AAFDFF--QRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                +  ++L   I +T+   ++I  + +  N+  A  +F  +  K+  S +AMI G+ 
Sbjct: 331 RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFA 390

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKNL 163
             G+ D A +L        +    + +  ++S     G  DL  K+F  M         L
Sbjct: 391 MHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKL 450

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
             +  MI     +   ++  +L+  M    + P+     S+L  C    +L+LG+ + Q 
Sbjct: 451 EHYGCMIDLLGRSGLFKEAEELINSMT---MEPDGVIWGSLLKACKIHKNLELGELIAQK 507

Query: 224 VFK 226
           + K
Sbjct: 508 LMK 510


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/569 (41%), Positives = 341/569 (59%), Gaps = 24/569 (4%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA+++FD+    DVVSY  +++    +   + +A   F  +PIKD  SWN MIS
Sbjct: 150 QNGRLEDARKVFDQSSHRDVVSYTALITG-YASKGYIASAQKMFDEIPIKDVVSWNAMIS 208

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW-- 135
           G+ +  N  +A +LF  M + N     S M+S    C Q   ++EL +      V +W  
Sbjct: 209 GYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ-SASIELGR-----QVHSWID 262

Query: 136 -----------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                       A+I  Y+K G+V+ A  LF+ +  K++++WN +I GY   +  ++ L 
Sbjct: 263 DHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALL 322

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISM 242
           L + M+  G  PN  ++ S+L  C+HL ++++G+ +H  + K    +   ++  T LI M
Sbjct: 323 LFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDM 382

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCGD+E A ++F  I  + + +WNAMI G+A HG+   A  +F +M+   ++PD ITF
Sbjct: 383 YAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITF 442

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG +G   EA ++I  M 
Sbjct: 443 VGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTME 502

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +P   I+ +LL AC+++  ++L E  A NL  + P N  G YV L+NIYA   +W++VA
Sbjct: 503 MEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNP-GSYVLLSNIYATAGRWNEVA 561

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           +IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VP
Sbjct: 562 KIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS
Sbjct: 622 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 681

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I KREII RD TRFHHF+DG CSC DYW
Sbjct: 682 KIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   NL+ WN M  G+  +S     L L   MI LG+ PN  +   +
Sbjct: 50  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 109

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------------- 251
           L  C+   + + G+Q+H  V K     D    T LISMY + G LED             
Sbjct: 110 LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 169

Query: 252 ------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                             A K+F EI  KDVV+WNAMISGYA+ G  ++AL LF +M   
Sbjct: 170 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V+++ AC  +  ++LG Q   S ++D+G  +       ++DL  + G++  
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 354 AVDLIKKMPFK 364
           A  L + + +K
Sbjct: 289 ACGLFEGLSYK 299



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 166/404 (41%), Gaps = 86/404 (21%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSC---------- 47
           +K  V+WN++++G+A + G  K+A ELF ++ + +V        +++ +C          
Sbjct: 197 IKDVVSWNAMISGYA-ETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 255

Query: 48  -----------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                  + +   +V  A   F+ L  KD  SWNT+I G+    
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 315

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECG--QLDKAVELFKVAPVKSVV----A 134
              +A  LF  M       N V+  +++      G  ++ + + ++    +K V      
Sbjct: 316 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 375

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A+++FD +  ++L +WNAMI G+  +  A     +   M    I
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH   L LG+     +F+S   K+   +TP +  Y           
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRH----IFRS--MKEDYKITPKLEHY----------- 478

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                          MI      G  ++A  + + M+   M+PD + + +LL AC     
Sbjct: 479 -------------GCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMYAN 522

Query: 315 VDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDL 357
           V+LG  Y  +++    I  K P  Y  + ++   AG+  E   +
Sbjct: 523 VELGESYAQNLIK---IEPKNPGSYVLLSNIYATAGRWNEVAKI 563


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/518 (42%), Positives = 320/518 (61%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLD-- 118
           F  +  K  +SWN ++ G+ Q  +  KA DL+L M +      W  + S  + C ++   
Sbjct: 267 FDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSL 326

Query: 119 ---KAVELFKVAPVKSVVAWT--AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
              + +  F +    +V  +   +++S Y+  GK   A+ LFD M  ++LV+WN MIAGY
Sbjct: 327 HYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGY 386

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N   ++ + L R M+  GI+P   ++  V   CS LS+L+LGK++H    K+ L +D 
Sbjct: 387 SQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDI 446

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + +I MY K G +  + ++F  ++ KDV +WN +I+GY  HG+G++AL LF+KM   
Sbjct: 447 FVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRL 506

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KPD  TF  +L+AC+HAGLV+ G++YF+ M+N + I  K +HYTC+VD+LGRAG++ +
Sbjct: 507 GLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDD 566

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+ LI++MP  P   I+ +LLS+CR+H  L L E  A  L  L P      YV ++N++A
Sbjct: 567 ALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPEN-YVLISNLFA 625

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
              KWDDV R+R  MK+  + K  G SWIEVG  VH F  GD + PEL  + E  + LE 
Sbjct: 626 GSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEV 685

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++   GY PD    LH + EE K  +L  HSEKLAI+FGL+    G P+RV+KNLR+CGD
Sbjct: 686 KISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGD 745

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A K+IS +  R+I+VRD  RFHHF+DG CSCGDYW
Sbjct: 746 CHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 192/424 (45%), Gaps = 58/424 (13%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLF---LAMPEKNSVSWSAMISGYIECGQLD 118
           F +L  K+   WN ++S + + +    A  +F   +++ E    +++         G LD
Sbjct: 164 FDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLD 223

Query: 119 KAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLA-EKLFDEMPTKNLVTWNAMIA 171
             +         K+  V  V    A+I+ Y K G V+ A +++FD M TK + +WNA++ 
Sbjct: 224 LGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLC 283

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +NS     L L   M   G+ P+  ++ S+LL CS + SL  G+++H    ++ L  
Sbjct: 284 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV 343

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+S+Y  CG    A  LF  ++ + +V+WN MI+GY+Q+G  ++A+ LF +M 
Sbjct: 344 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 403

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLG---------------IQYFDSMVNDY------G 330
            +G++P  I  + +  AC+    + LG               I    S+++ Y      G
Sbjct: 404 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 463

Query: 331 IAAK---------PDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACR 378
           ++ +            +  ++   G  G+  EA++L +KM     KP    F  +L AC 
Sbjct: 464 LSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 523

Query: 379 VHKRL---DLAEFAAM-NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            H  L    L  F  M NL N+ P      Y  + ++     + DD  R+        + 
Sbjct: 524 -HAGLVEDGLEYFNQMLNLHNIEPKLEH--YTCVVDMLGRAGRIDDALRL--------IE 572

Query: 435 KMPG 438
           +MPG
Sbjct: 573 EMPG 576



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 2/177 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-I 194
           T +I+ Y   G    +  +FD++  KNL  WNA+++ Y  N   ED + +   +I +   
Sbjct: 145 TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 204

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P+  +L  V+  C+ L  L LG+ +H +  K  L  D      LI+MY KCG +E+A K
Sbjct: 205 KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 264

Query: 255 -LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            +F  +  K V +WNA++ GYAQ+    KAL L+ +M D G+ PD  T  +LLLAC+
Sbjct: 265 RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 167/359 (46%), Gaps = 54/359 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNS---D 53
           M+ KT  +WN++L G+A+    R  L    ++ D    PD  +  +++L+C  + S    
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 329

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           + +  F     L + D     +++S ++       A+ LF  M  ++ VSW+ MI+GY +
Sbjct: 330 EEIHGFALRNGLAV-DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQ 388

Query: 114 CGQLDKAVELFK------VAP---------------------------------VKSVVA 134
            G  D+A+ LF+      + P                                  + +  
Sbjct: 389 NGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFV 448

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++I  Y K G + L++++FD +  K++ +WN +IAGY  +   ++ L+L   M+ LG+
Sbjct: 449 SSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGL 508

Query: 195 RPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +P+  + + +L+ CSH   ++ G +  +Q++    +       T ++ M  + G ++DA 
Sbjct: 509 KPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDAL 568

Query: 254 KLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +L  E+    D   W++++S    HG    GEK      +++ E  KP++   ++ L A
Sbjct: 569 RLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPE--KPENYVLISNLFA 625



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLF 256
           + ++  +L  C     +++G+++H++V  S   C D    T +I+MY  CG   D+  +F
Sbjct: 105 SEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVF 164

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLV 315
            +++RK++  WNA++S Y ++   E A+ +F ++      KPD+ T   ++ AC  AGL+
Sbjct: 165 DKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLL 222

Query: 316 DLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           DLG+ Q    M     + +       ++ + G+ G + EAV
Sbjct: 223 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAV 263


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/569 (41%), Positives = 331/569 (58%), Gaps = 32/569 (5%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFF 62
           T  WNS L   A+    + DA  LF ++ Q DV       S +L   LN  D+       
Sbjct: 93  TFVWNSCLKALAEGDSPI-DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDL------- 144

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                    S   ++ G V+K       +L+L          + ++  Y  CG++ +A  
Sbjct: 145 ---------SNGRILHGVVEKVGFRS--NLYLQ---------NMIVHLYASCGEMGEARL 184

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF+  P + VV W  MI+  +K G  + A  LF  MP +N+ +W +MIAGYV+   A++ 
Sbjct: 185 LFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEA 244

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           + L   M   G++ N  ++ +VL  C+ L +L LG ++H+   +    ++      LI M
Sbjct: 245 IHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDM 304

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG LE+ACK+F E++ + VV+W+AMI G A HG+ E+ALRLF  M   G++P+ +TF
Sbjct: 305 YVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 364

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + LL AC+H GL+  G ++F SM  DYGI  + +HY CMVDLL RAG L EA + I  MP
Sbjct: 365 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 424

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            KP   ++G LL ACRVHK +++AE A  +L  L+P N  G YV L+NIYA   +W+D A
Sbjct: 425 MKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLN-DGYYVVLSNIYAEAGRWEDTA 483

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           R+R  MK+  V K PG+S I V  VVHEF +G+  HP+   I ++ +EL + M+L GYVP
Sbjct: 484 RVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVP 543

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           +    L  + E  K + +  HSEKLA+ FGL+  P  TPIR+ KNLR+C DCH A K IS
Sbjct: 544 NTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLIS 603

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           AI  REI+VRD  RFH F D +CSC DYW
Sbjct: 604 AIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 351/614 (57%), Gaps = 47/614 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD------ 54
           M  +   +WN++L+ +AK  G +++   +FD++P  D VSYN +++C   N         
Sbjct: 84  MTKRDVYSWNTLLSAYAKM-GMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKV 142

Query: 55  -VVAAFDFFQ---------------------------RLPIKD----TASWNTMISGFVQ 82
            V    D FQ                           R+ + D    T   N M   + +
Sbjct: 143 LVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAK 202

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAM 138
             ++ KAR LF  M +KN VSW+ MISGY++ G  ++ + LF    +  +    V  + +
Sbjct: 203 CGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNV 262

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++ Y + G+VD A  LF ++P K+ + W  MI GY +N   ED   L   M+   ++P++
Sbjct: 263 LNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDS 322

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            ++SS++  C+ L+SL  G+ VH  V    +       + L+ MYCKCG   DA  +F  
Sbjct: 323 YTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFET 382

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  ++V+TWNAMI GYAQ+G+  +AL L+++M+ E  KPD+ITFV +L AC +A +V  G
Sbjct: 383 MPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEG 442

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            +YFDS ++++GIA   DHY CM+ LLGR+G + +AVDLI+ MP +P   I+ TLLS C 
Sbjct: 443 QKYFDS-ISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVC- 500

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
               L  AE AA +LF L+P N AG Y+ L+N+YAA  +W DVA +R  MKE N  K   
Sbjct: 501 AKGDLKNAELAASHLFELDPRN-AGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAA 559

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
           YSW+EVG  VH F S D  HPE+  I+ +L  L   ++  GY PD    LH VGEE K +
Sbjct: 560 YSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEKFR 619

Query: 499 LLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
            + +HSEKLA+AF LI+ P G  PIR+ KN+RVC DCH   K+ S    R II+RD+ RF
Sbjct: 620 SISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSNRF 679

Query: 558 HHFKDGTCSCGDYW 571
           HHF  G CSC D W
Sbjct: 680 HHFFGGKCSCNDNW 693



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 161/325 (49%), Gaps = 14/325 (4%)

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           +A+FD + RL +    +     + F+Q K +    +L L  P K+S   + ++  Y + G
Sbjct: 19  LASFDDYTRLVLHCARA-----NDFIQAKRLQSHMELNLFQP-KDSFIHNQLLHLYAKFG 72

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           +L  A  +F     + V +W  ++S Y K G V+    +FD+MP ++ V++N +IA +  
Sbjct: 73  KLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFAS 132

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           N  +   LK+L  M   G +P   S  + L  CS L  L+ GKQ+H  +  + L ++T  
Sbjct: 133 NGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFV 192

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              +  MY KCGD++ A  LF  +  K+VV+WN MISGY + G   + + LF++M+  G+
Sbjct: 193 RNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGL 252

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           KPD +T   +L A    G VD     F  +     I      +T M+    + G+  +A 
Sbjct: 253 KPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEIC-----WTTMIVGYAQNGREEDAW 307

Query: 356 DLIKKM---PFKPQPAIFGTLLSAC 377
            L   M     KP      +++S+C
Sbjct: 308 MLFGDMLRRNVKPDSYTISSMVSSC 332


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/638 (39%), Positives = 354/638 (55%), Gaps = 78/638 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVV------------- 56
           + L     + G+++ A  +F  I  PDVVS+N I+  C+L + +D+              
Sbjct: 222 NALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTR 281

Query: 57  -------------AAFDF------FQRLPIK-----DTASWNTMISGFVQKKNMAKARDL 92
                        AA  F           IK     D  +   ++  + + + M  AR  
Sbjct: 282 PNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRA 341

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA- 137
           + +MP+K+ ++W+A+ISGY +CG    AV LF                  +KSV +  A 
Sbjct: 342 YDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAI 401

Query: 138 ------------------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                                   ++  Y K   +D A K+F+E   ++LV + +MI  Y
Sbjct: 402 KVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAY 461

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    E+ LKL   M    I+P+    SS+L  C++LS+ + GKQ+H    K     D 
Sbjct: 462 SQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDI 521

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            A   L++MY KCG +EDA + F EI  + +V+W+AMI GYAQHG G++ALRLF++M  +
Sbjct: 522 FASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRD 581

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+ P+ IT V++L ACNHAGLV+ G QYF+ M   +GI    +HY CM+DLLGR+GKL E
Sbjct: 582 GVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNE 641

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           AV+L+  +PF+    ++G LL A R+HK ++L + AA  LF+L P   +G +V LANIYA
Sbjct: 642 AVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEP-EKSGTHVLLANIYA 700

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +   W++VA++R  MK++ V K PG SWIE+   V+ F  GDR H     I+ KL +L  
Sbjct: 701 SAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGD 760

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
            +  AGY   +E  +H V +  KE+LL  HSEKLA+AFGLI  P G PIRV KNLR+C D
Sbjct: 761 LLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVD 820

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K++  I  REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 821 CHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 44/338 (13%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D +  N +++ + + +    AR L     E + VSWS+++SGY++ G +++A+ +F   
Sbjct: 14  RDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEM 73

Query: 128 PVKSV-------------------------VAWTAMISG--------------YMKFGKV 148
            +  V                         V   A+++G              Y K G +
Sbjct: 74  CLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLL 133

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D + +LF  +  +N+V+WNA+ + YV++    + + L + M+  GI PN  S+S +L  C
Sbjct: 134 DDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC 193

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + L    LG+++H L+ K  L  D  +   L+ MY K G++E A  +F +I   DVV+WN
Sbjct: 194 AGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWN 253

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           A+I+G   H   + AL L D+MK  G +P+  T  + L AC   G  +LG Q   S++  
Sbjct: 254 AIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK- 312

Query: 329 YGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 364
             + A  D +    +VD+  +   + +A      MP K
Sbjct: 313 --MDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK 348



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 200/458 (43%), Gaps = 94/458 (20%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------------LN 51
            V+W+S+L+G+  Q G +++A  +F+++    V         +L              ++
Sbjct: 47  VVSWSSLLSGYV-QNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVH 105

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              VV  F+        D    NT++  + +   +  +R LF  + E+N VSW+A+ S Y
Sbjct: 106 GMAVVTGFE-------SDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCY 158

Query: 112 IECGQLDKAVELFK------VAPVKSVVAW------------------------------ 135
           ++     +AV LFK      + P +  ++                               
Sbjct: 159 VQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQ 218

Query: 136 ---TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
               A++  Y K G+++ A  +F ++   ++V+WNA+IAG V +   +  L LL  M G 
Sbjct: 219 FSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGS 278

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G RPN  +LSS L  C+ +   +LG+Q+H  + K     D  A   L+ MY KC  ++DA
Sbjct: 279 GTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDA 338

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA---- 308
            + +  + +KD++ WNA+ISGY+Q G    A+ LF KM  E +  +  T   +L +    
Sbjct: 339 RRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASL 398

Query: 309 -----CN--HAGLVDLGI----QYFDSMVNDYGIAAKPDH---------------YTCMV 342
                C   H   +  GI       +S+++ YG     D                YT M+
Sbjct: 399 QAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMI 458

Query: 343 DLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
               + G   EA+ L  +M     KP P I  +LL+AC
Sbjct: 459 TAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNAC 496



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 151/304 (49%), Gaps = 9/304 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +++ Y K  +   A KL DE    ++V+W+++++GYV+N + E+ L +   M  LG++ N
Sbjct: 22  LVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCN 81

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  SVL  CS    L +G++VH +   +    D      L+ MY KCG L+D+ +LF 
Sbjct: 82  EFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFG 141

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I  ++VV+WNA+ S Y Q     +A+ LF +M   G+ P+  +   +L AC      DL
Sbjct: 142 GIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDL 201

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +    M+   G+         +VD+  +AG++  AV + + +   P    +  +++ C
Sbjct: 202 GRKIHGLMLK-MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGC 259

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK-ENNVVKM 436
            +H   DLA      L  L+    +G    +  + +A+K    +    L  +  ++++KM
Sbjct: 260 VLHDCNDLA------LMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKM 313

Query: 437 PGYS 440
             +S
Sbjct: 314 DAHS 317



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 59/100 (59%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           ++H  + K    +D +    L+++Y KC     A KL  E    DVV+W++++SGY Q+G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
             E+AL +F++M   G+K +  TF ++L AC+    +++G
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMG 101


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/551 (41%), Positives = 339/551 (61%), Gaps = 28/551 (5%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD+IP P+ V    M S  + N + V  + + F+ +   D+AS     +  V   
Sbjct: 147 DARRAFDEIPDPNPVIVTAMASGYVRN-NLVYHSLELFRAMIASDSASVVDEAAALVAFS 205

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
             A+  D  +      + S  A+I+               K+   ++      M+  Y K
Sbjct: 206 ASARVPDRGV------TASLHALIA---------------KIGFERNAGVVNTMLDSYAK 244

Query: 145 FGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM--IGLGIRPNASS 200
            G  DL  A K+FD M  +++V+WN+MIA Y +N  + + + L   M  +G GI+ NA +
Sbjct: 245 GGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVA 303

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           LS+VLL C+H  ++Q GK++H  V +  L ++    T ++ MY KCG +E A + F +I+
Sbjct: 304 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK 363

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K++++W+AMI+GY  HG+G++AL +F +MK  G++P+ ITF+++L AC+HAGL+D G  
Sbjct: 364 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 423

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           ++++M  ++GI A  +HY CMVDLLGRAG L EA  LIK+M  KP  AI+G LLSACR+H
Sbjct: 424 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 483

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           K ++LAE +   LF L+ +N +G YV L+NIYA  + W DV RIRL +K   + K PGYS
Sbjct: 484 KNVELAEMSVKRLFELDASN-SGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYS 542

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
             E+   ++ F  GD+ HP+ + I+  L++L +RM+ AGYVP+    LH + EE KE  L
Sbjct: 543 SFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESAL 602

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLA+AF L+     + I + KNLRVC DCH A K+I+ I +REII+RD  RFHHF
Sbjct: 603 RIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHF 662

Query: 561 KDGTCSCGDYW 571
           KDG CSC DYW
Sbjct: 663 KDGLCSCRDYW 673



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 121/275 (44%), Gaps = 53/275 (19%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           S SA++  Y  C +   A   F   P  + V  TAM S                      
Sbjct: 131 SASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMAS---------------------- 168

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-- 220
                    GYV N+     L+L R MI       AS  +SV+   + L +     +V  
Sbjct: 169 ---------GYVRNNLVYHSLELFRAMI-------ASDSASVVDEAAALVAFSASARVPD 212

Query: 221 -------HQLVFKSPLCKDTTALTPLISMYCKCG--DLEDACKLFLEIQRKDVVTWNAMI 271
                  H L+ K    ++   +  ++  Y K G  DLE A K+F  ++R DVV+WN+MI
Sbjct: 213 RGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMI 271

Query: 272 SGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           + YAQ+G   +A+ L+ KM +   G+K +++   A+LLAC HAG +  G +  + +V   
Sbjct: 272 ALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-M 330

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           G+       T +VD+  + G++  A    +K+  K
Sbjct: 331 GLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK 365


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/591 (39%), Positives = 347/591 (58%), Gaps = 33/591 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 159 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFKAAFELFKNMRKEN 216

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA 120
           +P+ D  +W  +I+G+ Q+    +A ++F  M       N V+  +++S     G   + 
Sbjct: 217 IPL-DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 275

Query: 121 VELFKVA--------------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLV 164
           +E+   +                + ++ + A+I  Y K      A  +FD++P   +N+V
Sbjct: 276 MEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 335

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           TW  MI G+ +   + D LKL   MI    G+ PNA ++S +L+ C+HL+++++GKQ+H 
Sbjct: 336 TWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA 395

Query: 223 LVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
            V +      +       LI+MY KCGD++ A  +F  + +K  ++W +M++GY  HG+G
Sbjct: 396 YVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRG 455

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + +HY  
Sbjct: 456 SEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAY 515

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
            +DLL R G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  +N  N
Sbjct: 516 AIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEN 575

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GDR HP 
Sbjct: 576 D-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL 634

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+    G 
Sbjct: 635 SPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGC 694

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 695 PIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 190/441 (43%), Gaps = 101/441 (22%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------------------------ 94
           FD   +  I D  SWN+++S  V+  N   A DLF                         
Sbjct: 68  FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 127

Query: 95  -------AMPEKNSVS--------------WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  A+P+   V                +A+I  Y +CG ++ AV++F +   K VV
Sbjct: 128 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 187

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKN----LVTWNAMIAGYVENSWAEDGLKLLRMM 189
           +W AM++GY + G    A +LF  M  +N    +VTW A+IAGY +   + + L + R M
Sbjct: 188 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPL 239
           I  G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      L
Sbjct: 248 IFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 307

Query: 240 ISMYCKCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GM 295
           I MY KC   + A  +F +I  + ++VVTW  MI G+AQ+G    AL+LF +M  E  G+
Sbjct: 308 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 367

Query: 296 KPDSITFVALLLACNHAGLVDLGIQ---------------YF--DSMVNDYGIAAKPD-- 336
            P++ T   +L+AC H   + +G Q               YF  + ++N Y      D  
Sbjct: 368 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 427

Query: 337 -------------HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVH 380
                         +T M+   G  G+  EA+D+  KM    F P    F  +L AC   
Sbjct: 428 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 487

Query: 381 KRLD--LAEFAAMNL-FNLNP 398
             +D  L+ F +M+  + L P
Sbjct: 488 GMVDQGLSYFDSMSADYGLTP 508



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 9/206 (4%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLL 186
            +V    A+++ Y + G ++ A  +FDE+  +   ++++WN++++ +V++S A   L L 
Sbjct: 43  SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLF 102

Query: 187 RMMIGL------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             M  +        R +  S+ ++L  C  L ++   K+VH    ++    D      LI
Sbjct: 103 SKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALI 162

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             Y KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G  + A  LF  M+ E +  D +
Sbjct: 163 DAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMV 222

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMV 326
           T+ A++   +  G     +  F  M+
Sbjct: 223 TWTAVIAGYSQRGCSHEALNVFRQMI 248



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G R +  +L  VL  C  L S + G   H L+  +    +      L++MY +CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 249 LEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDS 299
           LE+A  +F EI ++   DV++WN+++S + +      AL LF KM      K    + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           I+ V +L AC     V    +   + + + G          ++D   + G +  AV +  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 360 KMPFK 364
            M FK
Sbjct: 180 MMEFK 184


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/585 (40%), Positives = 345/585 (58%), Gaps = 25/585 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI 67
           N++++ +AK   K+ +A ++F+ I + DVVS+N M++    + + D  ++ F   Q   I
Sbjct: 273 NALVSMYAKC-SKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDI 331

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL--DKA 120
           K D  +W+ +I+G+ QK +  +A D+F  M     E N V+ ++++SG    G L   K 
Sbjct: 332 KLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQ 391

Query: 121 VELFKVAPV---------KSVVAWTAMISGYMKFGKVDLAEKLFD--EMPTKNLVTWNAM 169
              + +  +           ++    +I  Y K     +A  +FD  E   KN+VTW  M
Sbjct: 392 THAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVM 451

Query: 170 IAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           I GY ++  A D LKL   +      ++PNA +LS  L+ C+ L  L+LG+Q+H    ++
Sbjct: 452 IGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRN 511

Query: 228 PLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
               +   +   LI MY K GD++ A  +F  ++ ++VV+W ++++GY  HG+GE+AL L
Sbjct: 512 ENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHL 571

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           FD+M+  G   D ITF+ +L AC+H+G+VD G+ YF  MV  +GI    +HY CMVDLLG
Sbjct: 572 FDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLG 631

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG+L EA++LIK M  +P   ++  LLSA R+H  ++L E+AA  L  L   N  G Y 
Sbjct: 632 RAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAEND-GSYT 690

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+N+YA  ++W DVARIR  MK   + K PG SWI+       F  GDR HPE   I+ 
Sbjct: 691 LLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYN 750

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            L +L KR+K  GYVP   FALH V +E K  LL  HSEKLA+A+G++    G PIR+ K
Sbjct: 751 LLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHK 810

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR+CGDCH A  YIS I   EI++RD++RFHHFK G+CSC  YW
Sbjct: 811 NLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 195/418 (46%), Gaps = 62/418 (14%)

Query: 3   VKTTVNWNSVLAGF---AKQRGKLKDAQELFDKIP---QPDVVSY-NIMLSC---ILLNS 52
           ++  V+WNS+LA +    + R  L+ A  + +      +PD ++  NI+ +C     L  
Sbjct: 193 IEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQH 252

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V  F     L + D    N ++S + +   M +A  +F  + +K+ VSW+AM++GY 
Sbjct: 253 GKQVHGFSVRNGL-VDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYS 311

Query: 113 ECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           + G  D A+ LFK+   +     V+ W+A+I+GY + G                      
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGH--------------------- 350

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
              G+       + L + R M   G+ PN  +L+S+L GC+ + +L  GKQ H  V K+ 
Sbjct: 351 ---GF-------EALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNI 400

Query: 229 LC-------KDTTALTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGK 279
           L         D   L  LI MY KC     A  +F  I+ KD  VVTW  MI GYAQHG+
Sbjct: 401 LNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGE 460

Query: 280 GEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
              AL+LF ++  +   +KP++ T    L+AC   G + LG Q     + +   +     
Sbjct: 461 ANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYV 520

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
             C++D+  ++G +  A  +   M  +   + + +L++   +H R +     A++LF+
Sbjct: 521 GNCLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGYGMHGRGE----EALHLFD 573



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 111/177 (62%), Gaps = 6/177 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEM---PTKNLVTWNAMIAGYVENSWAEDGLKLLRMM--- 189
            ++++ Y + G +D A ++FDE+     +++V+WN+++A YV+   +   L++   M   
Sbjct: 166 NSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNH 225

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             L +RP+A +L ++L  C+ + +LQ GKQVH    ++ L  D      L+SMY KC  +
Sbjct: 226 YSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKM 285

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            +A K+F  I++KDVV+WNAM++GY+Q G  + AL LF  M++E +K D IT+ A++
Sbjct: 286 NEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVI 342



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 37/213 (17%)

Query: 104 WSAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           +S  +  YIECG   +AV L  ++ P  S V W                           
Sbjct: 62  FSYAVGAYIECGASAEAVSLLQRLIPSHSTVFW--------------------------- 94

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
              WNA+I   V+    +D L     M  LG  P+  +   VL  C  + SL+ G  VH 
Sbjct: 95  ---WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHA 151

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRK--DVVTWNAMISGYAQHGK 279
           +V  + L  +      +++MY +CG L+DA ++F E+ +RK  D+V+WN++++ Y Q G+
Sbjct: 152 IVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQ 211

Query: 280 GEKALRLFDKMKDE---GMKPDSITFVALLLAC 309
              ALR+  +M +     ++PD+IT V +L AC
Sbjct: 212 SRTALRIAFRMGNHYSLKLRPDAITLVNILPAC 244


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 339/552 (61%), Gaps = 30/552 (5%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD+IP P+ V    M S  + N + V  + + F+ +   D+AS     +  V   
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRN-NLVYHSLELFRAMIASDSASVVDEAAALVAFS 60

Query: 85  NMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
             A+       +P++  + S  A+I+               K+   ++      M+  Y 
Sbjct: 61  ASAR-------VPDRGVTASLHALIA---------------KIGFERNAGVVNTMLDSYA 98

Query: 144 KFGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM--IGLGIRPNAS 199
           K G  DL  A K+FD M  +++V+WN+MIA Y +N  + + + L   M  +G GI+ NA 
Sbjct: 99  KGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAV 157

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +LS+VLL C+H  ++Q GK +H  V +  L ++    T ++ MY KCG +E A + F +I
Sbjct: 158 ALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKI 217

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           + K++++W+AMI+GY  HG+G++AL +F +MK  G++P+ ITF+++L AC+HAGL+D G 
Sbjct: 218 KEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 277

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
            ++++M  ++GI A  +HY CMVDLLGRAG L EA  LIK+M  KP  AI+G LLSACR+
Sbjct: 278 YWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRI 337

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           HK ++LAE +   LF L+ +N +G YV L+NIYA    W DV RIRL +K   + K PGY
Sbjct: 338 HKNVELAEMSVKRLFELDASN-SGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGY 396

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           S  E+   ++ F  GD+ HP+ + I+  L++L +RM+ AGYVP+    LH + EE KE  
Sbjct: 397 SSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESA 456

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L  HSEKLA+AF L+     + I + KNLRVC DCH A K+I+ I +REII+RD  RFHH
Sbjct: 457 LRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHH 516

Query: 560 FKDGTCSCGDYW 571
           FKDG CSC DYW
Sbjct: 517 FKDGLCSCRDYW 528


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/518 (43%), Positives = 303/518 (58%), Gaps = 8/518 (1%)

Query: 61   FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ 116
             F +L ++   +WN MI G  Q++   +A  LFL M  +    ++ ++  ++S  ++   
Sbjct: 581  LFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEA 640

Query: 117  LDKAVELFKVAPVKSVV---AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            L+   E+   A    +V      A++  Y K G V  A+++FD+M  +N+ TW  MI G 
Sbjct: 641  LEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGL 700

Query: 174  VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             ++    D       M+  GI P+A++  S+L  C+   +L+  K+VH     + L  D 
Sbjct: 701  AQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDL 760

Query: 234  TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                 L+ MY KCG ++DA  +F ++  +DV +W  MI G AQHG+G +AL  F KMK E
Sbjct: 761  RVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSE 820

Query: 294  GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            G KP+  ++VA+L AC+HAGLVD G + F SM  DYGI    +HYTCMVDLLGRAG L E
Sbjct: 821  GFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEE 880

Query: 354  AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
            A   I  MP +P  A +G LL AC  +  L++AEFAA     L P +A+  YV L+NIYA
Sbjct: 881  AELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSAS-TYVLLSNIYA 939

Query: 414  AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
            A  KW+    +R  M+   + K PG SWIEV   +H F  GD  HPE   I+ +L +L +
Sbjct: 940  ATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIE 999

Query: 474  RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
            R+K  GYVPD    L    +E KEQ L  HSEKLAI +GL+      PIRV+KNLRVC D
Sbjct: 1000 RLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSD 1059

Query: 534  CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            CH ATK+IS I  REI+ RD  RFHHFKDG CSCGDYW
Sbjct: 1060 CHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/543 (23%), Positives = 215/543 (39%), Gaps = 138/543 (25%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI------------------------------LL 50
           G ++DAQ +FDK+ + +V+S+ +M+  +                              +L
Sbjct: 268 GSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSIL 327

Query: 51  NSDDVVAAFDFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102
           N++    A ++ + +           D    N ++  + +  ++  AR +F  M E++  
Sbjct: 328 NANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIF 387

Query: 103 SWSAMISGYIECGQLDKAVELF---------------------KVAPVKSVVAW------ 135
           SW+ MI G  + G+  +A  LF                           S + W      
Sbjct: 388 SWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHK 447

Query: 136 --------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
                          A+I  Y K G +D A  +FD M  +++++WNAM+ G  +N    +
Sbjct: 448 HAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHE 507

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
              +   M   G+ P++++  S+L       +L+   +VH+   ++ L  D    +  I 
Sbjct: 508 AFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIH 567

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY +CG ++DA  LF ++  + V TWNAMI G AQ   G +AL LF +M+ EG  PD+ T
Sbjct: 568 MYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATT 627

Query: 302 FVALLLA----------------CNHAGLVDLGI------------------QYFDSMVN 327
           F+ +L A                   AGLVDL +                  Q FD MV 
Sbjct: 628 FINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVE 687

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLD 384
                     +T M+  L + G   +A     +M      P    + ++LSAC     L+
Sbjct: 688 -----RNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALE 742

Query: 385 LAE------FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
             +       +A  + +L   NA      L ++YA     DD   +   M E +V     
Sbjct: 743 WVKEVHNHAVSAGLVSDLRVGNA------LVHMYAKCGSIDDARSVFDDMVERDV----- 791

Query: 439 YSW 441
           +SW
Sbjct: 792 FSW 794



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 1/213 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y++ G++  A ++FD++  KN+  W  MI GY E   AED +++   M     +PN  + 
Sbjct: 163 YIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITY 222

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            S+L  C    +L+ GK++H  + +S    D    T L++MY KCG +EDA  +F ++  
Sbjct: 223 LSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVE 282

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           ++V++W  MI G A +G+G++A  LF +M+ EG  P+S T+V++L A   AG ++   + 
Sbjct: 283 RNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEV 342

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
               VN  G+A        +V +  ++G + +A
Sbjct: 343 HSHAVN-AGLALDLRVGNALVHMYAKSGSIDDA 374



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 126/274 (45%), Gaps = 39/274 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N ++  +++   +  AR +F  + +KN   W+ MI GY E G  + A+ ++         
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216

Query: 126 -------------VAPVK------------------SVVAWTAMISGYMKFGKVDLAEKL 154
                          PV                    V   TA+++ Y+K G ++ A+ +
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLI 276

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD+M  +N+++W  MI G       ++   L   M   G  PN+ +  S+L   +   +L
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           +  K+VH     + L  D      L+ MY K G ++DA  +F  +  +D+ +W  MI G 
Sbjct: 337 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGL 396

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           AQHG+G++A  LF +M+  G  P+  T++++L A
Sbjct: 397 AQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 174/409 (42%), Gaps = 75/409 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N+++  +AK  G + DA+ +FD +   DV+S+N M+  +  N     A   F Q      
Sbjct: 462 NALIHMYAKC-GSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGL 520

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVE 122
           + D+ ++ ++++       +    ++     E   +S     SA I  YI CG +D A  
Sbjct: 521 VPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARL 580

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF    V+ V  W                               NAMI G  +     + 
Sbjct: 581 LFDKLSVRHVTTW-------------------------------NAMIGGAAQQRCGREA 609

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L L   M   G  P+A++  ++L       +L+  K+VH     + L  D      L+  
Sbjct: 610 LSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLV-DLRVGNALVHT 668

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG+++ A ++F ++  ++V TW  MI G AQHG G  A   F +M  EG+ PD+ T+
Sbjct: 669 YSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTY 728

Query: 303 VALLLAC-------------NH---AGLVDLGIQYFDSMVNDYGIAAKPD---------- 336
           V++L AC             NH   AGLV   ++  +++V+ Y      D          
Sbjct: 729 VSILSACASTGALEWVKEVHNHAVSAGLVS-DLRVGNALVHMYAKCGSIDDARSVFDDMV 787

Query: 337 -----HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
                 +T M+  L + G+ +EA+D   KM    FKP    +  +L+AC
Sbjct: 788 ERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTAC 836



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 52/321 (16%)

Query: 163 LVTWNAMIAGYVENSW----AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           LV  NA + G  E +     A+D + +L++ +  GI  ++ S  ++L  C     + L K
Sbjct: 79  LVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAK 138

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           QVH  + KS + ++      L+ +Y +CG L+ A ++F ++ +K++  W  MI GYA++G
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYG 198

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ------- 320
             E A+R++DKM+ E  +P+ IT++++L AC            HA ++  G Q       
Sbjct: 199 HAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVET 258

Query: 321 -----------------YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP- 362
                             FD MV    I+     +T M+  L   G+  EA  L  +M  
Sbjct: 259 ALVNMYVKCGSIEDAQLIFDKMVERNVIS-----WTVMIGGLAHYGRGQEAFHLFLQMQR 313

Query: 363 --FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
             F P    + ++L+A      L+  +    +  N   A        L ++YA     DD
Sbjct: 314 EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD 373

Query: 421 VARIRLSMKENNVVKMPGYSW 441
              +   M E ++     +SW
Sbjct: 374 ARVVFDGMTERDI-----FSW 389



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 144/358 (40%), Gaps = 60/358 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           ++V+    WN+++ G A+QR   ++A  LF ++ +    PD  ++  +LS    N D+  
Sbjct: 585 LSVRHVTTWNAMIGGAAQQRCG-REALSLFLQMQREGFIPDATTFINILSA---NVDE-- 638

Query: 57  AAFDFFQRL-------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            A ++ + +        + D    N ++  + +  N+  A+ +F  M E+N  +W+ MI 
Sbjct: 639 EALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIG 698

Query: 110 GYIE--CGQ--LDKAVELFKVAPVKSVVAWTAMISG------------------------ 141
           G  +  CG       +++ +   V     + +++S                         
Sbjct: 699 GLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVS 758

Query: 142 -----------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
                      Y K G +D A  +FD+M  +++ +W  MI G  ++    + L     M 
Sbjct: 759 DLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMK 818

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             G +PN  S  +VL  CSH   +  G +Q   +     +       T ++ +  + G L
Sbjct: 819 SEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLL 878

Query: 250 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           E+A    L +    D   W A++     +G  E A   F   +   +KP S +   LL
Sbjct: 879 EEAELFILNMPIEPDDAPWGALLGACVTYGNLEMA--EFAAKERLKLKPKSASTYVLL 934


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 359/606 (59%), Gaps = 54/606 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+V+  +A+  G +  A+++FD+IP  +  V  +N M+S       +  A +  F  +P 
Sbjct: 134 NAVIDMYARL-GPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQW-LFDVMPE 191

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-- 125
           ++  +W  M++G+ + K++  AR  F  MPE++ VSW+AM+SGY + G  ++A+ LF   
Sbjct: 192 RNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM 251

Query: 126 ----VAPVKSVVAWTAMISG-----------------------------------YMKFG 146
               + P ++   W  +IS                                    Y KFG
Sbjct: 252 VNAGIEPDETT--WVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFG 309

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVL 205
            +D A KLF+ MP +N+VTWN+MIAGY +N  +   ++L + MI    + P+  ++ SV+
Sbjct: 310 DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 369

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C HL +L+LG  V + + ++ +    +    +I MY +CG +EDA ++F E+  +DVV
Sbjct: 370 SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV 429

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           ++N +ISG+A HG G +A+ L   MK+ G++PD +TF+ +L AC+HAGL++ G + F+S 
Sbjct: 430 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES- 488

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
           + D  I    DHY CMVDLLGR G+L +A   +++MP +P   ++G+LL+A R+HK+++L
Sbjct: 489 IKDPAI----DHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVEL 544

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
            E AA  LF L P N+ G ++ L+NIYA+  +W DV RIR +MK+  V K  G+SW+E G
Sbjct: 545 GELAANKLFELEPDNS-GNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYG 603

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
             +H+F   DR H     I++ L EL K+M+ AGY+ D    L  V EE KE+++  HSE
Sbjct: 604 GKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSE 663

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           KLAI + L+    G  IRV KNLRVC DCH A K IS +E R IIVRD  RFH F DG C
Sbjct: 664 KLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLC 723

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 724 SCKDYW 729



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 52/299 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  ++ V+WN++L+G+A Q G  ++A  LFD++     +PD  ++  ++S      D  +
Sbjct: 220 MPERSVVSWNAMLSGYA-QNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCL 278

Query: 57  AAF---DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           AA       Q+    +      ++  + +  ++  AR LF  MP +N V+W++MI+GY +
Sbjct: 279 AASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQ 338

Query: 114 CGQLDKAVELF-------KVAPVK---------------------------------SVV 133
            GQ   A+ELF       K+ P +                                 S+ 
Sbjct: 339 NGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSIS 398

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              AMI  Y + G ++ A+++F EM T+++V++N +I+G+  +    + + L+  M   G
Sbjct: 399 GHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGG 458

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           I P+  +   VL  CSH   L+ G++V + + K P       +  L+    + G+LEDA
Sbjct: 459 IEPDRVTFIGVLTACSHAGLLEEGRKVFESI-KDPAIDHYACMVDLLG---RVGELEDA 513



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 110/276 (39%), Gaps = 76/276 (27%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM---MIGLGIRPNASSLSSVLLGCSH 210
           LF+     N+  + +M+  Y   S  +D  K++ M   M G G+RP+A  +  +L+    
Sbjct: 56  LFNSTLNPNVFVFTSMLRFY---SHLQDHAKVVLMYEQMQGCGVRPDAF-VYPILIK--- 108

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI---QRK----- 262
            S+   G   H  V K     D      +I MY + G +  A K+F EI   +RK     
Sbjct: 109 -SAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWN 167

Query: 263 -------------------------DVVTW------------------------------ 267
                                    +V+TW                              
Sbjct: 168 AMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS 227

Query: 268 -NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
            NAM+SGYAQ+G  E+ALRLFD+M + G++PD  T+V ++ AC+  G   L      ++ 
Sbjct: 228 WNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL- 286

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +   I       T ++D+  + G L  A  L   MP
Sbjct: 287 HQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMP 322


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/615 (38%), Positives = 345/615 (56%), Gaps = 47/615 (7%)

Query: 3   VKTTVNWNS-VLAGFAKQ------RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV 55
           +KT+++ N+ VLA   ++         L  A+ +FD+IP PD   +N M+   L + +  
Sbjct: 27  IKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQ 86

Query: 56  VAAFDFFQR-----LPI----------------------------------KDTASWNTM 76
            +   FFQ      +PI                                   D      +
Sbjct: 87  ESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETAL 146

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           I  + +  ++  AR++   M   + V ++ +++ Y+  G+++ A +LF   P + +V+W 
Sbjct: 147 IEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWN 206

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            MI G+   G V  A+KLFD    ++L++W++MIA Y +   + + L+L   M    + P
Sbjct: 207 TMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLP 266

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  ++ SVL  C  + +L +GK +H+ + ++ +  D    T L+ MY KCGD++++ ++F
Sbjct: 267 DKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVF 326

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  +DV  W+AMI G A HG GE AL  F KM  E +KP+ +TF+ +L AC+H GLVD
Sbjct: 327 NGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVD 386

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G  YF SM   Y ++ K +HY C+VD+LGRAG+L EA++LIK MPF P   ++  LL A
Sbjct: 387 EGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGA 446

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR++K +++AE A +NL  L P +  G YV L+NIY+  K+WD V  +R  MK  N+ K+
Sbjct: 447 CRIYKNVEIAEEATVNLLELEP-HVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKV 505

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S IEV   VHEF +GD+ HPE   I   L E+  R+K  GY P     L    E+ K
Sbjct: 506 PGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEK 565

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E  L  HSEKLAIAFGL+    G+ IR+ KNLRVC DCH A K IS   KR IIVRD  R
Sbjct: 566 ENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNR 625

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF +G+CSC DYW
Sbjct: 626 FHHFVNGSCSCKDYW 640


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/639 (38%), Positives = 349/639 (54%), Gaps = 79/639 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLN-SDDVVAAFDFFQRLPIK 68
           + L  F  + G L +AQ LF  +   DVV++N M++ C L    DD V      Q   I 
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207

Query: 69  DTASW------------------------------NTMISG------FVQKKNMAKARDL 92
             +S                               N ++ G      + + + +  AR +
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELF---------------------------- 124
           F  M  +N VSWSAMI GY+    + +A+ELF                            
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 125 ------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                       K+  V  ++    ++S Y K G +D A + FDEM  K+ V+++A+++G
Sbjct: 328 LSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSG 387

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+N  A   L + RMM   GI P+ +++  VL  CSHL++LQ G   H  +       D
Sbjct: 388 CVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 447

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
           T     LI MY KCG +  A ++F  + R D+V+WNAMI GY  HG G +AL LF  +  
Sbjct: 448 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+KPD ITF+ LL +C+H+GLV  G  +FD+M  D+ I  + +H  CMVD+LGRAG + 
Sbjct: 508 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 567

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA   I+ MPF+P   I+  LLSACR+HK ++L E  +  + +L P  + G +V L+NIY
Sbjct: 568 EAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIY 626

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           +A  +WDD A IR++ K+  + K+PG SWIE+  +VH F  GD+ H +L  I+ KL+EL 
Sbjct: 627 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 686

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
             MK  GY  +  F    V EE KEQ+LL+HSEKLAIAFG++ +  G PI V KNLRVCG
Sbjct: 687 VEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCG 746

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K+++ I KREI VRD  RFHHFK+GTC+CGD+W
Sbjct: 747 DCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y+   +V LA +LFDE+P  +++ WN +I  Y  N   +  + L   M+ LG+RPN  + 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             VL  CS L +++ G ++H       L  D    T L+  Y KCG L +A +LF  +  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV WNAMI+G + +G  + A++L  +M++EG+ P+S T V +L     A  +  G   
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKAL 232

Query: 322 FDSMVN---DYGIAAKP---DHYT---CMV------DLLGRAGK---------------L 351
               V    D G+       D Y    C++      D++G   +               +
Sbjct: 233 HGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCM 292

Query: 352 VEAVDLIKKMPFK----PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV- 406
            EA++L  +M  K    P P   G++L AC   K  DL+    ++ + +   +     + 
Sbjct: 293 KEALELFDQMILKDAMDPTPVTLGSVLRACA--KLTDLSRGRKLHCYIIKLGSVLDILLG 350

Query: 407 -QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
             L ++YA     DD  R    M   + V    +S I  G V
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDEMNPKDSVS---FSAIVSGCV 389



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 165/367 (44%), Gaps = 17/367 (4%)

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKN 100
           L+ + L+ + VV A   F  +P      WN +I  +        A DL+ +M       N
Sbjct: 49  LTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPN 108

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFD 156
             ++  ++        ++  VE+   A +      V   TA++  Y K G +  A++LF 
Sbjct: 109 KYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFS 168

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            M  +++V WNAMIAG       +D ++L+  M   GI PN+S++  VL       +L  
Sbjct: 169 SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGH 228

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK +H    +          T L+ MY KC  L  A K+F  +  ++ V+W+AMI GY  
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVA 288

Query: 277 HGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAK 334
               ++AL LFD+M   + M P  +T  ++L AC  A L DL   +     +   G    
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC--AKLTDLSRGRKLHCYIIKLGSVLD 346

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-FGTLLSAC--RVHKRLDLAEFAAM 391
                 ++ +  + G + +A+    +M   P+ ++ F  ++S C    +  + L+ F  M
Sbjct: 347 ILLGNTLLSMYAKCGVIDDAIRFFDEM--NPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 392 NLFNLNP 398
            L  ++P
Sbjct: 405 QLSGIDP 411



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C    SL   K++HQ   K+    D++ L  L  +Y  C  +  A +LF EI    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V+ WN +I  YA +G  + A+ L+  M   G++P+  T+  +L AC+    ++ G++   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           S    +G+ +     T +VD   + G LVEA  L   M  +   A +  +++ C ++   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLC 191

Query: 384 D 384
           D
Sbjct: 192 D 192


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/604 (39%), Positives = 346/604 (57%), Gaps = 61/604 (10%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ---------------- 63
           +G+   A+ +FD+  + +VV +N+M+    +N++  V A   FQ                
Sbjct: 84  QGETSVARYIFDRSLEKNVVFFNVMIRS-YVNNNLYVEALSIFQVMLSCAFNPDHYTFPC 142

Query: 64  -----------RLPIK----------DTASW--NTMISGFVQKKNMAKARDLFLAMPEKN 100
                      R+ ++          DT  +  N +++ + +   + +AR +   MP ++
Sbjct: 143 VLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRD 202

Query: 101 SVSWSAMISGYIECGQLDKAVELFK-------------VAPVKSVVAWTAMISGYMKFGK 147
            VSW++M++GY + GQ D A+E+ K             +A +  VV +T++         
Sbjct: 203 VVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL-------EN 255

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           V     +F+ M  KNL++WN MIA YV NS   + + L   M   G++P+A +++S+L  
Sbjct: 256 VQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPA 315

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C  LS+L LG+++H+ + K  L  +      L+ MY KCG LE+A  +F +++ +DVV+W
Sbjct: 316 CGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSW 375

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            +M+S Y + G+G  A+ LF KM D G  PDSI FV++L AC+H GL+D G  YF  M  
Sbjct: 376 TSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTE 435

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
            YGI  + +H+ CMVDL GRAG++ EA   IK+MP +P   ++G LLSACRVH ++D+  
Sbjct: 436 QYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGL 495

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
            AA  LF L P   +G YV L+NIYA    W DV  +R +MK+  + K+PG S +E+   
Sbjct: 496 VAADLLFQLAPKQ-SGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQ 554

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           VH F +GD+ HP+  +I+ +L  L  +MK  GY+P  E ALH V  E KE  L  HSEKL
Sbjct: 555 VHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKL 614

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           AI F ++    GTPIR+ KNLRVCGDCH A K IS I  R IIVRD  RFHHF +G CSC
Sbjct: 615 AIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSC 674

Query: 568 GDYW 571
           GDYW
Sbjct: 675 GDYW 678



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y   G+  +A  +FD    KN+V +N MI  YV N+   + L + ++M+     P+
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS L +L++G QVH  + K  L  +      L++MY KCG L +A K+  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++  +DVV+WN+M++GYAQ G+ + AL +  +M    +  D+ T  +L     +  L + 
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLEN- 255

Query: 318 GIQY----FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIF 370
            +QY    F+ M     I+     +  M+ +        EAV L  +M     KP     
Sbjct: 256 -VQYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTI 309

Query: 371 GTLLSAC----------RVHKRLDLAEFAAMNLFN---LNPANAAGCYVQLANIYAAMKK 417
            +LL AC          R+HK ++        L     L+     GC  +  +++  M+ 
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 418 WDDVA 422
            D V+
Sbjct: 370 RDVVS 374



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           L K   ++V    L  D T    L+  Y   G+   A  +F     K+VV +N MI  Y 
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            +    +AL +F  M      PD  TF  +L AC+    + +G+Q  D++V   G+    
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNL 172

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK------------PQPAIFGTLLSACRVHKRL 383
                +V + G+ G L EA  ++ +MP++             Q   F   L  C+    L
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSL 232

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANI 411
           +L   A   + +L+P     CY  L N+
Sbjct: 233 NLNHDAG-TMASLSP---VVCYTSLENV 256


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/511 (43%), Positives = 313/511 (61%), Gaps = 21/511 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N +++ + +   + +AR +   MP ++ VSW++M++GY + GQ D A+E+ K        
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 126 -----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                +A +  VV +T++         V     +F+ M  KNL++WN MIA YV NS   
Sbjct: 236 HDAGTMASLSPVVCYTSL-------ENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPN 288

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + + L   M   G++P+A +++S+L  C  LS+L LG+++H+ + K  L  +      L+
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALL 348

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG LE+A  +F +++ +DVV+W +M+S Y + G+G  A+ LF KM D G  PDSI
Sbjct: 349 DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSI 408

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
            FV++L AC+H GL+D G  YF  M   YGI  + +H+ CMVDL GRAG++ EA   IK+
Sbjct: 409 AFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQ 468

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P   ++G LLSACRVH ++D+   AA  LF L P   +G YV L+NIYA    W D
Sbjct: 469 MPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQ-SGYYVLLSNIYAKAGMWKD 527

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           V  +R +MK+  + K+PG S +E+   VH F +GD+ HP+  +I+ +L  L  +MK  GY
Sbjct: 528 VMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGY 587

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           +P  E ALH V  E KE  L  HSEKLAI F ++    GTPIR+ KNLRVCGDCH A K 
Sbjct: 588 IPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKL 647

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I  R IIVRD  RFHHF +G CSCGDYW
Sbjct: 648 ISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y   G+  +A  +FD    KN+V +N MI  YV N+   + L + ++M+     P+
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS L +L++G QVH  + K  L  +      L++MY KCG L +A K+  
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++  +DVV+WN+M++GYAQ G+ + AL +  +M    +  D+ T  +L     +  L + 
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLEN- 255

Query: 318 GIQY----FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIF 370
            +QY    F+ M     I+     +  M+ +        EAV L  +M     KP     
Sbjct: 256 -VQYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTI 309

Query: 371 GTLLSAC----------RVHKRLDLAEFAAMNLFN---LNPANAAGCYVQLANIYAAMKK 417
            +LL AC          R+HK ++        L     L+     GC  +  +++  M+ 
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRL 369

Query: 418 WDDVA 422
            D V+
Sbjct: 370 RDVVS 374



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           L K   ++V    L  D T    L+  Y   G+   A  +F     K+VV +N MI  Y 
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            +    +AL +F  M      PD  TF  +L AC+    + +G+Q  D++V   G+    
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNL 172

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK------------PQPAIFGTLLSACRVHKRL 383
                +V + G+ G L EA  ++ +MP++             Q   F   L  C+    L
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSL 232

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANI 411
           +L   A   + +L+P     CY  L N+
Sbjct: 233 NLNHDAG-TMASLSP---VVCYTSLENV 256


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/549 (41%), Positives = 324/549 (59%), Gaps = 46/549 (8%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-- 125
           +D  S   +I+G+  + +   AR +F  + E++ VSW+AMI+GY+E G+ ++A+ELFK  
Sbjct: 128 RDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM 187

Query: 126 ----VAP--------------------VKSVVAW-----------------TAMISGYMK 144
               V P                     + V +W                  A+I  Y K
Sbjct: 188 MRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSK 247

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G V+ A  LF+ +  K++V+WN +I GY   +  ++ L L + M+  G  PN  +L SV
Sbjct: 248 CGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSV 307

Query: 205 LLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           L  C+HL ++ +G+ +H  + K    +  +T+  T LI MY KCGD+E A ++F  +  +
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR 367

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
            + +WNAMI G+A HG+   A  LF +M+   ++PD ITFV LL AC+H+GL+DLG Q F
Sbjct: 368 SLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIF 427

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            SM  DY +  K +HY CM+DLLG +G   EA ++I  MP +P   I+ +LL AC+ H  
Sbjct: 428 KSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGN 487

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           L+LAE  A  L  + P N+ G YV L+NIYA   +W+DVAR+R  +    + K+PG S I
Sbjct: 488 LELAESFAQKLIKIEPENS-GSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSI 546

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           EV +VVHEF  GD++HP    I+  L+E++ +++ AG+ PD    L  + EE KE  L  
Sbjct: 547 EVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRH 606

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS I KREI+ RD TRFHHF+D
Sbjct: 607 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRD 666

Query: 563 GTCSCGDYW 571
           G CSC DYW
Sbjct: 667 GVCSCCDYW 675



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 210/440 (47%), Gaps = 64/440 (14%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTMISGFV 81
           A  +F+ I +P+++ +N ML     +S D V+A + + R+     + ++ S+  ++    
Sbjct: 17  AISVFETIQEPNLLIWNTMLRG-HASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCA 75

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           + K   + R +   + +     +    +++IS Y   G L+ A ++F  +  + VV+ TA
Sbjct: 76  KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+GY   G    A K+FDE+  +++V+WNAMI GYVEN   E+ L+L + M+   +RP+
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLV--------FKSPLCKDTTALTPLISMYCKCGDL 249
             +L SV+  C+   S++LG+QVH  V        F S L      +  LI +Y KCGD+
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSL----KIVNALIDLYSKCGDV 251

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E A  LF  +  KDVV+WN +I GY      ++AL LF +M   G  P+ +T +++L AC
Sbjct: 252 ETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPAC 311

Query: 310 NHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-- 364
            H G +D+G     Y D  +   G+  +    T ++D+  + G +  A  +   M ++  
Sbjct: 312 AHLGAIDIGRWIHVYIDKKLK--GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSL 369

Query: 365 --------------------------------PQPAIFGTLLSACRVHKRLDLAE--FAA 390
                                           P    F  LLSAC     LDL    F +
Sbjct: 370 SSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKS 429

Query: 391 MNL-FNLNPA-NAAGCYVQL 408
           M   +NL P     GC + L
Sbjct: 430 MTQDYNLTPKLEHYGCMIDL 449



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 34/254 (13%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   NL+ WN M+ G+  +S     L++   M+ LG  PN+ S   +
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------ 252
           L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA            
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 253 --C-----------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
             C                 K+F EI  +DVV+WNAMI+GY ++G+ E+AL LF +M   
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
            ++PD  T V+++ AC  +G ++LG Q   + D   +D+G ++       ++DL  + G 
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 351 LVEAVDLIKKMPFK 364
           +  A  L + +  K
Sbjct: 251 VETAFGLFEGLSCK 264


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/627 (38%), Positives = 359/627 (57%), Gaps = 61/627 (9%)

Query: 4   KTTV-NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAF 59
           KT+V +WNS++A FA+    L+ A   F  + +  +        C + +     D+ A  
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQ-ALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGK 106

Query: 60  DFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              Q+  +     D    + +I  + +   +  AR LF  +PE+N VSW++MISGY++  
Sbjct: 107 QIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNE 166

Query: 116 QLDKAVELFK---------------------------------VAPVKSVV--------- 133
           +  +AV LFK                                    VKSV          
Sbjct: 167 RAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVK 226

Query: 134 --------AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                       ++  Y K G++ ++ K+FD M   ++ +WN++IA Y +N  + +   L
Sbjct: 227 KGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSL 286

Query: 186 LRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
              M+  G +R NA +LS+VLL C+H  +LQ+GK +H  V K  L  +    T ++ MYC
Sbjct: 287 FSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYC 346

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG +E A K F  ++RK+V +W  M++GY  HG G++A+++F +M   G+KP+ ITFV+
Sbjct: 347 KCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVS 406

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+HAGL+  G  +F+ M  ++ +    +HY+CMVDLLGRAG L EA  LI++M  K
Sbjct: 407 VLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVK 466

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P   ++G+LL ACR+HK ++L E +A  LF L+P+N  G YV L+NIYA   +WDDV R+
Sbjct: 467 PDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSN-CGYYVLLSNIYADAGRWDDVERM 525

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R+ MK + ++K PGYS +E    VH F  GD+ HP+   I+E L EL  +++  GY+P++
Sbjct: 526 RILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNV 585

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
              L+ V  E K  +L  HSEKLA+AFG++    G+ I++ KNLR+CGDCH A K IS I
Sbjct: 586 TSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKI 645

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
             REI++RD+ RFHHFKDG CSCGDYW
Sbjct: 646 VNREIVIRDSKRFHHFKDGLCSCGDYW 672


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 357/639 (55%), Gaps = 86/639 (13%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTAS 72
           F K  G L  A ++FDK+P+ ++V++ +M++    L  + D +  F D      + D  +
Sbjct: 174 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 233

Query: 73  WNTMISGFVQKKNMA--------------------------------------KARDLFL 94
           +++++S   +   +A                                       +R +F 
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293

Query: 95  AMPEKNSVSWSAMISGYIECGQLDK-AVELF----------------------------- 124
            MPE N +SW+A+I+ Y++ G+ DK A+ELF                             
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 353

Query: 125 ------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                        +A V  V    ++IS Y + G+++ A K FD +  KNLV++NA++ G
Sbjct: 354 TGEQVYSYAVKLGIASVNCV--GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 411

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N  +E+   L   +   GI  +A + +S+L G + + ++  G+Q+H  + K     +
Sbjct: 412 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 471

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 LISMY +CG++E A ++F E++ ++V++W +MI+G+A+HG   +AL +F KM +
Sbjct: 472 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 531

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G KP+ IT+VA+L AC+H G++  G ++F+SM  ++GI  + +HY CMVDLLGR+G LV
Sbjct: 532 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 591

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA++ I  MP      ++ TLL ACRVH   +L   AA  +    P + A  Y+ L+N++
Sbjct: 592 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAA-YILLSNLH 650

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A+  +W DV +IR SMKE N++K  G SWIEV   VH F  G+  HP+   I+++L +L 
Sbjct: 651 ASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLA 710

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            ++K  GY+PD +F LH + EE KEQ L  HSEK+A+AFGLI      PIR+FKNLRVCG
Sbjct: 711 SKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCG 770

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A KYIS    REI+VRD+ RFHH K+G CSC DYW
Sbjct: 771 DCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 178/387 (45%), Gaps = 54/387 (13%)

Query: 21  GKLKDAQELFDKIPQ----PDVVSYNIML-SCILLNSDDV--VAAFDFFQRLPIKDTASW 73
           G+L  A    D + Q    PD+ +Y+I+L SCI   +  +  +      Q     D+   
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNS-VSWSAMISGYIECGQLDKAVELFK------- 125
           NT+IS + +  +   AR +F  M  K   VSWSAM+S +       +A+  F        
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 126 -------VAPVKSV----VAWTAMI-------SGYMKF----------------GKVDLA 151
                   A +++      AW   I       +GY++                 G +  A
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K+FD+MP +NLVTW  MI  + +   A D + L   M   G  P+  + SSVL  C+ L
Sbjct: 185 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 244

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWN 268
             L LGKQ+H  V +  L  D      L+ MY KC   G ++D+ K+F ++   +V++W 
Sbjct: 245 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 304

Query: 269 AMISGYAQHGKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           A+I+ Y Q G+ +K A+ LF KM    ++P+  +F ++L AC +      G Q +   V 
Sbjct: 305 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 364

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             GIA+       ++ +  R+G++ +A
Sbjct: 365 -LGIASVNCVGNSLISMYARSGRMEDA 390



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 44/315 (13%)

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           L +M      P+ ++ S +L  C    + QLGK VH+ + +S L  D+  L  LIS+Y K
Sbjct: 14  LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 73

Query: 246 CGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           CGD E A  +F  +  ++D+V+W+AM+S +A +    +A+  F  M + G  P+   F A
Sbjct: 74  CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 133

Query: 305 LLLACNHAGL--------------------VDLGIQYFDSMV---NDYGIAAK-----PD 336
           ++ AC++A                      V +G +  D  V    D G A K     P+
Sbjct: 134 VIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 193

Query: 337 H----YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFA 389
                +T M+    + G   +A+DL   M    + P    + ++LSAC     L L +  
Sbjct: 194 RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 253

Query: 390 AMNLFNLNPANAAGCYVQLANIY---AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
              +  L  A        L ++Y   AA    DD  ++   M E+NV+     SW  + T
Sbjct: 254 HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM-----SWTAIIT 308

Query: 447 VVHEFRSGDRVHPEL 461
              +    D+   EL
Sbjct: 309 AYVQSGECDKEAIEL 323


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/558 (41%), Positives = 336/558 (60%), Gaps = 9/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFD-FFQRLPIKDTASWNTMI 77
           G +  A+ LFD+    ++V YN +LS       + + +A  D   Q+ P  D  +  + I
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAM----ISGYIECGQLDKAVELFKVAPVKSVV 133
           S   Q  ++   +     +       W ++    I  Y++CG+ + A  +F +   K+VV
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W ++ +G+++ G V+ A ++F+++P +N V WN MI+G V+ S  ED ++L R M G G
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+ +  ++  +   C +L + +L K VH  + K+ +  D    T L+ M+ +CGD + A 
Sbjct: 461 IKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAM 520

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F ++  +DV  W A I   A  G GE A  LF++M  +G+KPD + FV +L AC+H G
Sbjct: 521 QVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGG 580

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            V+ G+  F S++ D+GI+ + +HY CMVDLLGRAG L EA DLIK MP +P   ++G+L
Sbjct: 581 QVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSL 639

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L+ACRVHK +++A +AA  +  L P  A G +V L+NIYA+  KW DVAR+RL+++E  V
Sbjct: 640 LAACRVHKNVEMATYAAERINELAPQRA-GVHVLLSNIYASAGKWTDVARVRLNLREKGV 698

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+PG S ++V  V+HEF SGD  HPE+  I   L+E+  R   AG++PDL   L  V E
Sbjct: 699 RKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDE 758

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           + KE LL  HSEKLAIAFGLI      PIRV KNLR+C DCH   K  S I  REIIVRD
Sbjct: 759 QEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRD 818

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFH F+ G CSC DYW
Sbjct: 819 NNRFHFFRQGLCSCCDYW 836



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 139/270 (51%), Gaps = 12/270 (4%)

Query: 58  AFDFFQRLPIKDTASW--NTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGY 111
           AF+ F+     D A +  N++I G+       +A  L++ M       N  ++  ++SG 
Sbjct: 82  AFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGC 141

Query: 112 IECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            +     + +++     K+   + V     +I  Y + G +D   K+F+ M  +N+V+W 
Sbjct: 142 TKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWT 201

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           ++I GY      ++ + L   M+  GIRP++ ++  V+  C+ L  L +G++V   + + 
Sbjct: 202 SLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGEL 261

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  +   +  L+ MY KCG ++ A +LF E   +++V +N ++S YA+ G   +AL + 
Sbjct: 262 GLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAIL 321

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           D+M  +G +PD +T ++ + A   A LVDL
Sbjct: 322 DEMLQQGPRPDRVTMLSAISA--SAQLVDL 349



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 148 VDLAEKLF-----DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           +D A K F     D      L   N++I GY       + + L   M+ LG+ PN  +  
Sbjct: 76  LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL GC+ +++   G QVH  V K  L +D      LI  Y +CG ++   K+F  +  +
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +VV+W ++I GYA+  + ++A+ LF +M + G++P S+T V ++ AC     +D+G +  
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG-ERV 254

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            + + + G+         +VD+  + G    A+D  K++
Sbjct: 255 CAYIGELGLKLNKVMVNALVDMYMKCG----AIDAAKRL 289



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 44/302 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ KT V+WNS+ AGF +  G ++ A E+F++IP+ + V +N                  
Sbjct: 394 MSNKTVVSWNSLTAGFIRN-GDVESAWEVFNQIPERNAVFWN------------------ 434

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIEC 114
                         TMISG VQK     A +LF  M       ++ ++   A   GY+  
Sbjct: 435 --------------TMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGA 480

Query: 115 GQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            +L K V  +  K      +   TA++  + + G    A ++F++M  +++  W A I  
Sbjct: 481 PELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGT 540

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
                  E    L   M+  G++P+      VL  CSH   ++ G  +  L+    +   
Sbjct: 541 MAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQ 600

Query: 233 TTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                 ++ +  + G L +A  L   + ++  DVV W ++++    H   E A    +++
Sbjct: 601 IEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV-WGSLLAACRVHKNVEMATYAAERI 659

Query: 291 KD 292
            +
Sbjct: 660 NE 661


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/638 (38%), Positives = 354/638 (55%), Gaps = 80/638 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----DFFQRLP 66
           S LA    +  +  DA+++FD +P PD + +N +L+   L   + + AF    D  +  P
Sbjct: 153 SALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAG--LPGSEALEAFVRMVDAGRVRP 210

Query: 67  IKDT-----------------------------ASWNTMISG----FVQKKNMAKARDLF 93
              T                             A    +++G    + +  +M  A+ LF
Sbjct: 211 DSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLF 270

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFK----------------VAPVKS------ 131
             M   + V+++A+ISGY   G ++ +VELFK                V PV S      
Sbjct: 271 DRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHEL 330

Query: 132 -----------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
                             +  TA+ + Y +   ++ A  +FD M  K + +WNAMI+GY 
Sbjct: 331 LARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYA 390

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +N   E  + L ++M  L ++PN  ++SS L  C+HL +L LGK VH+++ K  L  +  
Sbjct: 391 QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVY 450

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
            +T LI MY KCG + +A  +F  +  K+VV+WNAMISGY  HG+G +AL+L+  M D  
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDAR 510

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           + P S TF++++ AC+H GLVD G + F  M N+Y I    +H TCMVDLLGRAGKL EA
Sbjct: 511 ILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEA 570

Query: 355 VDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           ++LI + P     P ++G LL AC VHK  DLA+ A+  LF L+  N AG YV L+N+Y 
Sbjct: 571 LELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSEN-AGYYVLLSNLYT 629

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           + K + + A +R   K   +VK PG + IE+G   H F +GD +HP+  +I+  L+ L  
Sbjct: 630 SKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTA 689

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +M  AGY P  E AL+ V EE KE ++  HSEKLAIAFGL+    GT IR+ KNLRVC D
Sbjct: 690 KMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLD 749

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH ATK+IS + +R I+VRD +RFHHF+DG CSCGDYW
Sbjct: 750 CHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 22/178 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILLNSDDVVAA 58
           KT  +WN++++G+A Q G  + A  LF  +     QP+ ++ +  LS C  L +   ++ 
Sbjct: 377 KTMESWNAMISGYA-QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA---LSL 432

Query: 59  FDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +  R+  K+    N      +I  + +  ++A+AR +F  M  KN VSW+AMISGY  
Sbjct: 433 GKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGL 492

Query: 114 CGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            GQ  +A++L+K      + P  S   + ++I      G VD  +K+F  M  +  +T
Sbjct: 493 HGQGAEALKLYKDMLDARILPTSST--FLSVIYACSHGGLVDEGQKVFRVMTNEYRIT 548



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 15/169 (8%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
            + +H L   +    DT   + L  +Y K    +DA K+F  +   D + WN +++G   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL-- 190

Query: 277 HGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA--- 332
              G +AL  F +M D G ++PDS T  + L A   A  + +G       V+ YG+    
Sbjct: 191 --PGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMG-----RCVHGYGVKCGL 243

Query: 333 AKPDH-YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           A+ +H  T ++ L  + G +  A  L  +M   P    +  L+S   V+
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFDRMD-NPDLVAYNALISGYSVN 291


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 359/638 (56%), Gaps = 84/638 (13%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           F K RG L  A ++F+K+P+ + V++ +M++  L+       A D F  +          
Sbjct: 214 FVKGRGDLVSAFKVFEKMPERNAVTWTLMIT-RLMQFGYAGEAIDLFLDMIFSGYEPDRF 272

Query: 76  MISGFVQK------------------------------------------KNMAKARDLF 93
            +SG +                                             +M  AR +F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDK-AVELFK------VAPVKSVVAWT---------- 136
             + + N  SW+AMI+GY++ G  D+ A++LF+      V P     + T          
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 137 -----------------------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                                  ++IS Y + G++D A K FD +  KNL+++N +I  Y
Sbjct: 393 RIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAY 452

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N  +E+ L+L   +   G+  +A + +S+L G + + ++  G+Q+H  V KS L  + 
Sbjct: 453 AKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQ 512

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
           +    LISMY +CG++E A ++F +++ ++V++W ++I+G+A+HG   +AL LF KM +E
Sbjct: 513 SVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEE 572

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++P+ +T++A+L AC+H GLV+ G ++F SM  ++G+  + +HY C+VD+LGR+G L E
Sbjct: 573 GVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSE 632

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  I  MP+K    ++ T L ACRVH  L+L + AA  +    P + A  Y+ L+N+YA
Sbjct: 633 AIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAA-YILLSNLYA 691

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           ++ KWD+V+ IR +MKE  ++K  G SW+EV   VH+F  GD  HP+   I+++L+ L  
Sbjct: 692 SISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSV 751

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++K  GYVP+L+F LH V EE KE+LL  HSEK+A+AFGLI      PIRVFKNLR+CGD
Sbjct: 752 KIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGD 811

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A KYIS    REIIVRD  RFHH KDG CSC +YW
Sbjct: 812 CHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 164/339 (48%), Gaps = 13/339 (3%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           Q DV     ++   +    D+V+AF  F+++P ++  +W  MI+  +Q     +A DLFL
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFL 260

Query: 95  AM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV----AWTAMISGYMKF- 145
            M     E +  + S +IS       L    +L   A    +         +I+ Y K  
Sbjct: 261 DMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS 320

Query: 146 --GKVDLAEKLFDEMPTKNLVTWNAMIAGYVE-NSWAEDGLKLLRMMIGLGIRPNASSLS 202
             G +  A K+FD++   N+ +W AMI GYV+   + E+ L L R MI   + PN  + S
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S L  C++L++L++G+QV     K            LISMY + G ++DA K F  +  K
Sbjct: 381 STLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +++++N +I  YA++   E+AL LF++++D+GM   + TF +LL      G +  G Q  
Sbjct: 441 NLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIH 500

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++   G+         ++ +  R G +  A  + + M
Sbjct: 501 ARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 192/428 (44%), Gaps = 59/428 (13%)

Query: 21  GKLKDA----QELFDKIPQPDVVSYNIMLS-CILLNSDDV--VAAFDFFQRLPIKDTASW 73
           G+L  A    + +  +   PD+ +Y++ L  CI   S D+  +      Q     D+ + 
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 74  NTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGY----------------IECGQ 116
           N++IS + +     KA  +F  M   ++ +SWSAM+S +                IE G 
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 117 L---------DKAVELFKVAPVKSVVAWTAMISGYMKF--------------GKVDL--A 151
                      +A    +   V   +    + +GY++               G+ DL  A
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K+F++MP +N VTW  MI   ++  +A + + L   MI  G  P+  +LS V+  C+++
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANM 284

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWN 268
             L LG+Q+H    +  L  D      LI+MY KC   G +  A K+F +I   +V +W 
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 269 AMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           AMI+GY Q G   E+AL LF  M    + P+  TF + L AC +   + +G Q F   V 
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK 404

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
             G ++       ++ +  R+G++ +A      + F+     + T++ A    K L+  E
Sbjct: 405 -LGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDA--YAKNLNSEE 460

Query: 388 FAAMNLFN 395
             A+ LFN
Sbjct: 461 --ALELFN 466



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 4/192 (2%)

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           + N      +  L  M+  G  P+  + S  L  C    S  +G  VH+ + +S L  D+
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 234 TALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             L  LIS+Y KCG  E A  +F L    +D+++W+AM+S +A +  G +AL  F  M +
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL--GRAGK 350
            G  P+   F A   AC+ A  V +G   F  ++    + +       ++D+   GR G 
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR-GD 220

Query: 351 LVEAVDLIKKMP 362
           LV A  + +KMP
Sbjct: 221 LVSAFKVFEKMP 232



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 126/281 (44%), Gaps = 41/281 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFFQRLPI 67
           NS+++ +A+  G++ DA++ FD + + +++SYN ++      LNS++ +  F+  +   +
Sbjct: 415 NSLISMYARS-GRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGM 473

Query: 68  KDTA-SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
             +A ++ +++SG      + K   +   + +     N    +A+IS Y  CG ++ A +
Sbjct: 474 GASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F+    ++V++WT++I+G+ K G                               +A   
Sbjct: 534 VFEDMEDRNVISWTSIITGFAKHG-------------------------------FATQA 562

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLIS 241
           L+L   M+  G+RPN  +  +VL  CSH+  +  G K    +  +  +         ++ 
Sbjct: 563 LELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVD 622

Query: 242 MYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGE 281
           +  + G L +A +    +  K D + W   +     HG  E
Sbjct: 623 ILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLE 663


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/560 (41%), Positives = 330/560 (58%), Gaps = 43/560 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK    + LFD+I QPD++SYN                                 MISG+
Sbjct: 263 GKSCKGRILFDQIDQPDLISYN--------------------------------AMISGY 290

Query: 81  VQKKNMAKARDLF---LAMPEK-NSVSWSAMISGYIECG--QLDKAVE--LFKVAPVKSV 132
                   A  LF   LA  ++ NS +   +I  Y+     QL + ++    K+  +   
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA+ + Y +  +V  A +LFDE P K+L +WNAMI+GY +N   +  + L + M+  
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP- 409

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            + PN  +++S+L  C+ L +L +GK VH L+    L  +    T L+ MY KCG + +A
Sbjct: 410 QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +LF  +  K+VVTWNAMI+GY  HG G++AL+LF +M   G+ P  +TF+++L AC+H+
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV  G + F SM N+YG     +HY CMVD+LGRAG+L  A++ I++MP +P PA++G 
Sbjct: 530 GLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGA 589

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL AC +HK  ++A  A+  LF L+P N  G YV L+NIY+  + +   A +R  +K+  
Sbjct: 590 LLGACMIHKNTEMANVASKRLFQLDPEN-VGYYVLLSNIYSTDRNFPKAASVRQVVKKRK 648

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHAV 491
           + K PG + IE+    + F SGDR HP+  +I E L++L  +M+ AGY  + +  ALH V
Sbjct: 649 LAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDV 708

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +E KE ++  HSEKLAIAFGLI    GT IR+ KNLRVC DCH ATK+IS I +R I+V
Sbjct: 709 EDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVV 768

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK+G CSCGDYW
Sbjct: 769 RDANRFHHFKNGICSCGDYW 788



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F  +P +DT  WNTMISGF +      +  +F+ M +     +S + + +++   E  + 
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 118 DKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
              + +  +A  K     V   T +IS Y K GK      LFD++   +L+++NAMI+GY
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N   E  + L R ++  G R N+S+L  ++      + LQL + +  L  K  +    
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
           +  T L ++YC+  +++ A +LF E   K + +WNAMISGY Q+G  ++A+ LF +M  +
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ 410

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + P+ +T  ++L AC   G + +G ++   ++    + +     T +VD+  + G +VE
Sbjct: 411 -LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVE 468

Query: 354 AVDLIKKM 361
           A  L   M
Sbjct: 469 ARQLFDLM 476



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 13/235 (5%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +A++  Y KF + +LA K+FD MP ++ V WN MI+G+  NS+ ED +++   M+ +G+ 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK- 254
            ++++L++VL   + L   +LG  +  L  K  L  D   LT LIS+Y KCG    +CK 
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG---KSCKG 268

Query: 255 --LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---LAC 309
             LF +I + D++++NAMISGY  + + E A+ LF ++   G + +S T V L+   L  
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           NH  L  L IQ     +   GI  +P   T +  +  R  ++  A  L  + P K
Sbjct: 329 NHLQLSRL-IQNLSLKI---GIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK 379



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 6/218 (2%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL---LRMMIGL 192
           T +   +   G V    +LF+++   +L  +N +I G+ +N   +  + L   LR    L
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNL 109

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
             RP+  + +  +   S L   ++G  +H       +  +    + ++ +Y K    E A
Sbjct: 110 --RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELA 167

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K+F  +  +D V WN MISG++++   E ++R+F  M D G+  DS T   +L A    
Sbjct: 168 RKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
               LG+     + +  G+ +     T ++ L  + GK
Sbjct: 228 QEYRLGMG-IQCLASKKGLHSDVYVLTGLISLYSKCGK 264


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/560 (41%), Positives = 330/560 (58%), Gaps = 43/560 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK    + LFD+I QPD++SYN                                 MISG+
Sbjct: 263 GKSCKGRILFDQIDQPDLISYN--------------------------------AMISGY 290

Query: 81  VQKKNMAKARDLF---LAMPEK-NSVSWSAMISGYIECG--QLDKAVE--LFKVAPVKSV 132
                   A  LF   LA  ++ NS +   +I  Y+     QL + ++    K+  +   
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA+ + Y +  +V  A +LFDE P K+L +WNAMI+GY +N   +  + L + M+  
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP- 409

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            + PN  +++S+L  C+ L +L +GK VH L+    L  +    T L+ MY KCG + +A
Sbjct: 410 QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEA 469

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +LF  +  K+VVTWNAMI+GY  HG G++AL+LF +M   G+ P  +TF+++L AC+H+
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV  G + F SM N+YG     +HY CMVD+LGRAG+L  A++ I++MP +P PA++G 
Sbjct: 530 GLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGA 589

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL AC +HK  ++A  A+  LF L+P N  G YV L+NIY+  + +   A +R  +K+  
Sbjct: 590 LLGACMIHKNTEMANVASKRLFQLDPEN-VGYYVLLSNIYSTDRNFPKAASVRQVVKKRK 648

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHAV 491
           + K PG + IE+    + F SGDR HP+  +I E L++L  +M+ AGY  + +  ALH V
Sbjct: 649 LAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDV 708

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +E KE ++  HSEKLAIAFGLI    GT IR+ KNLRVC DCH ATK+IS I +R I+V
Sbjct: 709 EDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVV 768

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK+G CSCGDYW
Sbjct: 769 RDANRFHHFKNGICSCGDYW 788



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F  +P +DT  WNTMISGF +      +  +F+ M +     +S + + +++   E  + 
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 118 DKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
              + +  +A  K     V   T +IS Y K GK      LFD++   +L+++NAMI+GY
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N   E  + L R ++  G R N+S+L  ++      + LQL + +  L  K  +    
Sbjct: 291 TFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP 350

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
           +  T L ++YC+  +++ A +LF E   K + +WNAMISGY Q+G  ++A+ LF +M  +
Sbjct: 351 SVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ 410

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + P+ +T  ++L AC   G + +G ++   ++    + +     T +VD+  + G +VE
Sbjct: 411 -LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVE 468

Query: 354 AVDLIKKM 361
           A  L   M
Sbjct: 469 ARQLFDLM 476



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 40/352 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +   ++LF+K+ +PD+  +N+++      SD+ +     F             + +  
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGF---SDNGLPKSSIF-------------LYTHL 103

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP--VKSVVAWTAM 138
            +K N+          P+  + +++   +  +E  ++   +    +      ++   +A+
Sbjct: 104 RKKTNLR---------PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAI 154

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y KF + +LA K+FD MP ++ V WN MI+G+  NS+ ED +++   M+ +G+  ++
Sbjct: 155 VDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDS 214

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---L 255
           ++L++VL   + L   +LG  +  L  K  L  D   LT LIS+Y KCG    +CK   L
Sbjct: 215 TTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG---KSCKGRIL 271

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---LACNHA 312
           F +I + D++++NAMISGY  + + E A+ LF ++   G + +S T V L+   L  NH 
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHL 331

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            L  L IQ     +   GI  +P   T +  +  R  ++  A  L  + P K
Sbjct: 332 QLSRL-IQNLSLKI---GIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK 379



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 2/216 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGI 194
           T +   +   G V    +LF+++   +L  +N +I G+ +N   +  + L   +     +
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNL 109

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP+  + +  +   S L   ++G  +H       +  +    + ++ +Y K    E A K
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARK 169

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  +  +D V WN MISG++++   E ++R+F  M D G+  DS T   +L A      
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             LG+     + +  G+ +     T ++ L  + GK
Sbjct: 230 YRLGMG-IQCLASKKGLHSDVYVLTGLISLYSKCGK 264


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/591 (39%), Positives = 347/591 (58%), Gaps = 33/591 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 266 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFKAAFELFKNMRKEN 323

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA 120
           +P+ D  +W  +I+G+ Q+    +A ++F  M       N V+  +++S     G   + 
Sbjct: 324 IPL-DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 382

Query: 121 VELFKVA--------------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLV 164
           +E+   +                + ++ + A+I  Y K      A  +FD++P   +N+V
Sbjct: 383 MEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 442

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           TW  MI G+ +   + D LKL   MI    G+ PNA ++S +L+ C+HL+++++GKQ+H 
Sbjct: 443 TWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA 502

Query: 223 LVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
            V +      +       LI+MY KCGD++ A  +F  + +K  ++W +M++GY  HG+G
Sbjct: 503 YVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRG 562

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + +HY  
Sbjct: 563 SEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAY 622

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
            +DLL R G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  +N  N
Sbjct: 623 AIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEN 682

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GDR HP 
Sbjct: 683 D-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL 741

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+    G 
Sbjct: 742 SPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGC 801

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 802 PIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 190/441 (43%), Gaps = 101/441 (22%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------------------------ 94
           FD   +  I D  SWN+++S  V+  N   A DLF                         
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 95  -------AMPEKNSVS--------------WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  A+P+   V                +A+I  Y +CG ++ AV++F +   K VV
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 294

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKN----LVTWNAMIAGYVENSWAEDGLKLLRMM 189
           +W AM++GY + G    A +LF  M  +N    +VTW A+IAGY +   + + L + R M
Sbjct: 295 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPL 239
           I  G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      L
Sbjct: 355 IFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 414

Query: 240 ISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GM 295
           I MY KC   + A  +F  + ++ ++VVTW  MI G+AQ+G    AL+LF +M  E  G+
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 296 KPDSITFVALLLACNHAGLVDLGIQ---------------YF--DSMVNDYGIAAKPD-- 336
            P++ T   +L+AC H   + +G Q               YF  + ++N Y      D  
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 337 -------------HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVH 380
                         +T M+   G  G+  EA+D+  KM    F P    F  +L AC   
Sbjct: 535 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 594

Query: 381 KRLD--LAEFAAMNL-FNLNP 398
             +D  L+ F +M+  + L P
Sbjct: 595 GMVDQGLSYFDSMSADYGLTP 615



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 106/200 (53%), Gaps = 9/200 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
            A+++ Y + G ++ A  +FDE+  +   ++++WN++++ +V++S A   L L   M  +
Sbjct: 156 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 215

Query: 193 ------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
                   R +  S+ ++L  C  L ++   K+VH    ++    D      LI  Y KC
Sbjct: 216 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC 275

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +E+A K+F  ++ KDVV+WNAM++GY+Q G  + A  LF  M+ E +  D +T+ A++
Sbjct: 276 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI 335

Query: 307 LACNHAGLVDLGIQYFDSMV 326
              +  G     +  F  M+
Sbjct: 336 AGYSQRGCSHEALNVFRQMI 355



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 10/238 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +++ Y+  G  D A  + + +     V WN +I  +++    +  + +   M+  G R
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  +L  VL  C  L S + G   H L+  +    +      L++MY +CG LE+A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 256 FLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSITFVALL 306
           F EI ++   DV++WN+++S + +      AL LF KM      K    + D I+ V +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            AC     V    +   + + + G          ++D   + G +  AV +   M FK
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/523 (44%), Positives = 326/523 (62%), Gaps = 11/523 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A   F  +P +D  SWN MISG+ Q  N A+A D+   M     + ++++ ++++    +
Sbjct: 48  ARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQ 107

Query: 114 CGQL--DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G +   K + L+  K      +    A+I+ Y KFG +  A+K+F  +  K++V+WN +
Sbjct: 108 VGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTL 166

Query: 170 IAGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I GY +N  A + +++ L M     I PN  +  S+L   SH+ +LQ G ++H  V K+ 
Sbjct: 167 ITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC 226

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L  D    T LI MY KCG L+DA  LF ++ RK+ V WNAMIS Y  HG GEKAL LF 
Sbjct: 227 LYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFR 286

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +MK E +KPD ITFV+LL AC+H+GLV      F+ M  +YGI     HY CMVDL GRA
Sbjct: 287 EMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRA 346

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G+L  A + IKKMP +P  + +G LL+ACR+H  ++L + A+  LF ++  N  G YV L
Sbjct: 347 GELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSEN-VGYYVLL 405

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           +NIYA + KW+ V  +R   ++  + K PG+S I +   V  F +G++ HP+   I+ +L
Sbjct: 406 SNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYREL 465

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
           ++L  ++K  GYVPD  F L  V E+ KE +L+ HSE+LAIA+G+I     TPIR+FKNL
Sbjct: 466 RDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNL 525

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVCGDCH  TK+IS I +REIIVRD++RFHHFK GTCSCGDYW
Sbjct: 526 RVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 142/248 (57%), Gaps = 8/248 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            +++  Y +FG V  A KLFD+MP ++  +WNAMI+GY +N  A + L +   M   G++
Sbjct: 33  ASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVK 92

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +A +++SVL  C+ +  +  GK +H  V K  L  +      LI+MY K G L  A K+
Sbjct: 93  MDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKV 152

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGL 314
           F  +  KDVV+WN +I+GYAQ+G   +A+ ++  M++ E + P+  T+V++L A +H G 
Sbjct: 153 F-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGA 211

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           +  G++    ++ +       D +  TC++D+ G+ GKL +A+ L  ++P K     +  
Sbjct: 212 LQQGMRIHGQVIKN---CLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRK-NSVPWNA 267

Query: 373 LLSACRVH 380
           ++S   VH
Sbjct: 268 MISCYGVH 275



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 58/97 (59%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK++H LV K     D      L+ MY + G + DA KLF ++  +D  +WNAMISGY Q
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +G   +AL + D+M+ EG+K D+IT  ++L  C   G
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVG 109



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 38/329 (11%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K  V+WN+++ G+A Q G   +A E++  + + + +  N      +L +   V A    
Sbjct: 157 IKDVVSWNTLITGYA-QNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQG 215

Query: 63  QRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            R+           D      +I  + +   +  A  LF  +P KNSV W+AMIS Y   
Sbjct: 216 MRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVH 275

Query: 115 GQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NLVT 165
           G  +KA+ELF+    + V    + + +++S     G V  A+  F+ M  +     +L  
Sbjct: 276 GDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKH 335

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           +  M+  +      E     ++ M    I+P+AS+  ++L  C    +++LGK   + +F
Sbjct: 336 YGCMVDLFGRAGELEMAFNFIKKM---PIQPDASAWGALLNACRIHGNIELGKHASERLF 392

Query: 226 KSPLCKDTTALTPLISMYCKCGDLE---DACKLFLEIQRKDVVTWNAMI---------SG 273
           +    ++      L ++Y   G  E   D   L  +   +    W+++I         +G
Sbjct: 393 EVD-SENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTG 451

Query: 274 YAQHGKGEKALR----LFDKMKDEGMKPD 298
              H K E+  R    L  K+K  G  PD
Sbjct: 452 NQTHPKCEEIYRELRDLTSKIKTIGYVPD 480



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 119/259 (45%), Gaps = 27/259 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           GKL DA  LF ++P+ + V +N M+SC  ++ D    A + F+ +  +    D  ++ ++
Sbjct: 245 GKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDG-EKALELFREMKAERVKPDHITFVSL 303

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVK- 130
           +S       ++ A+  F  M E+  +      +  M+  +   G+L+ A    K  P++ 
Sbjct: 304 LSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQP 363

Query: 131 SVVAWTAMISGYMKFGKVDL----AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
              AW A+++     G ++L    +E+LF E+ ++N V +  +++    N    +G+  +
Sbjct: 364 DASAWGALLNACRIHGNIELGKHASERLF-EVDSEN-VGYYVLLSNIYANVGKWEGVDDV 421

Query: 187 RMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYC 244
           R +    G+R N    SS++L  + +     G Q H      P C++    L  L S   
Sbjct: 422 RSLARDRGLRKNP-GWSSIILN-NKVDVFYTGNQTH------PKCEEIYRELRDLTSKIK 473

Query: 245 KCGDLEDACKLFLEIQRKD 263
             G + D C +  +++  +
Sbjct: 474 TIGYVPDFCFVLQDVEEDE 492


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/554 (40%), Positives = 340/554 (61%), Gaps = 14/554 (2%)

Query: 29  LFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           +FD++PQ    S +  +   +CI+    D V     F+ +P KD  S+NT+I+G+ Q   
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV--FEVMPRKDVVSYNTIIAGYAQSGM 222

Query: 86  MAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTA 137
              A    R++     + +S + S+++  + E   + K  E+      K     V   ++
Sbjct: 223 YEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSS 282

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K  +++ +E++F  +  ++ ++WN+++AGYV+N    + L+L R M+   ++P 
Sbjct: 283 LVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPG 342

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A + SSV+  C+HL++L LGKQ+H  V +     +    + L+ MY KCG+++ A K+F 
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +   D V+W A+I G+A HG G +A+ LF++MK +G+KP+ + FVA+L AC+H GLVD 
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
              YF+SM   YG+  + +HY  + DLLGRAGKL EA + I KM  +P  +++ TLLS+C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
            VHK L+LAE  A  +F ++  N  G YV + N+YA+  +W ++A++RL M++  + K P
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSEN-MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP 581

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
             SWIE+    H F SGDR HP +  I+E LK + ++M+  GYV D    LH V EE K 
Sbjct: 582 ACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKR 641

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           +LL  HSE+LA+AFG+I    GT IRV KN+R+C DCH A K+IS I +REIIVRD +RF
Sbjct: 642 ELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRF 701

Query: 558 HHFKDGTCSCGDYW 571
           HHF  G CSCGDYW
Sbjct: 702 HHFNRGNCSCGDYW 715



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 31/277 (11%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSY-NIMLSCILLNS-------DD 54
           ++WNS++AG+  Q G+  +A  LF ++     +P  V++ +++ +C  L +         
Sbjct: 309 ISWNSLVAGYV-QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            V    F   + I      + ++  + +  N+  AR +F  M   + VSW+A+I G+   
Sbjct: 368 YVLRGGFGSNIFIA-----SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALH 422

Query: 115 GQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKNLVT 165
           G   +AV LF+    + V    VA+ A+++     G VD A   F+ M       + L  
Sbjct: 423 GHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEH 482

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           + A+          E+    +  M    + P  S  S++L  CS   +L+L ++V + +F
Sbjct: 483 YAAVADLLGRAGKLEEAYNFISKMC---VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF 539

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
                ++  A   + +MY   G  ++  KL L +++K
Sbjct: 540 TVD-SENMGAYVLMCNMYASNGRWKEMAKLRLRMRKK 575


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 357/639 (55%), Gaps = 86/639 (13%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTAS 72
           F K  G L  A ++FDK+P+ ++V++ +M++    L  + D +  F D      + D  +
Sbjct: 192 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 251

Query: 73  WNTMISGFVQKKNMA--------------------------------------KARDLFL 94
           +++++S   +   +A                                       +R +F 
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311

Query: 95  AMPEKNSVSWSAMISGYIECGQLDK-AVELF----------------------------- 124
            MPE N +SW+A+I+ Y++ G+ DK A+ELF                             
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPY 371

Query: 125 ------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                        +A V  V    ++IS Y + G+++ A K FD +  KNLV++NA++ G
Sbjct: 372 TGEQVYSYAVKLGIASVNCV--GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 429

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N  +E+   L   +   GI  +A + +S+L G + + ++  G+Q+H  + K     +
Sbjct: 430 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 489

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 LISMY +CG++E A ++F E++ ++V++W +MI+G+A+HG   +AL +F KM +
Sbjct: 490 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 549

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G KP+ IT+VA+L AC+H G++  G ++F+SM  ++GI  + +HY CMVDLLGR+G LV
Sbjct: 550 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 609

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA++ I  MP      ++ TLL ACRVH   +L   AA  +    P + A  Y+ L+N++
Sbjct: 610 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAA-YILLSNLH 668

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A+  +W DV +IR SMKE N++K  G SWIEV   VH F  G+  HP+   I+++L +L 
Sbjct: 669 ASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLA 728

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            ++K  GY+PD +F LH + EE KEQ L  HSEK+A+AFGLI      PIR+FKNLRVCG
Sbjct: 729 SKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCG 788

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A KYIS    REI+VRD+ RFHH K+G CSC DYW
Sbjct: 789 DCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 178/387 (45%), Gaps = 54/387 (13%)

Query: 21  GKLKDAQELFDKIPQ----PDVVSYNIML-SCILLNSDDV--VAAFDFFQRLPIKDTASW 73
           G+L  A    D + Q    PD+ +Y+I+L SCI   +  +  +      Q     D+   
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNS-VSWSAMISGYIECGQLDKAVELFK------- 125
           NT+IS + +  +   AR +F  M  K   VSWSAM+S +       +A+  F        
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 126 -------VAPVKSV----VAWTAMI-------SGYMKF----------------GKVDLA 151
                   A +++      AW   I       +GY++                 G +  A
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 202

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K+FD+MP +NLVTW  MI  + +   A D + L   M   G  P+  + SSVL  C+ L
Sbjct: 203 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 262

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWN 268
             L LGKQ+H  V +  L  D      L+ MY KC   G ++D+ K+F ++   +V++W 
Sbjct: 263 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 322

Query: 269 AMISGYAQHGKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           A+I+ Y Q G+ +K A+ LF KM    ++P+  +F ++L AC +      G Q +   V 
Sbjct: 323 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 382

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             GIA+       ++ +  R+G++ +A
Sbjct: 383 -LGIASVNCVGNSLISMYARSGRMEDA 408



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 44/315 (13%)

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           L +M      P+ ++ S +L  C    + QLGK VH+ + +S L  D+  L  LIS+Y K
Sbjct: 32  LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 91

Query: 246 CGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           CGD E A  +F  +  ++D+V+W+AM+S +A +    +A+  F  M + G  P+   F A
Sbjct: 92  CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 151

Query: 305 LLLACNHAGL--------------------VDLGIQYFDSMV---NDYGIAAK-----PD 336
           ++ AC++A                      V +G +  D  V    D G A K     P+
Sbjct: 152 VIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 211

Query: 337 H----YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFA 389
                +T M+    + G   +A+DL   M    + P    + ++LSAC     L L +  
Sbjct: 212 RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 271

Query: 390 AMNLFNLNPANAAGCYVQLANIY---AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
              +  L  A        L ++Y   AA    DD  ++   M E+NV+     SW  + T
Sbjct: 272 HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM-----SWTAIIT 326

Query: 447 VVHEFRSGDRVHPEL 461
              +    D+   EL
Sbjct: 327 AYVQSGECDKEAIEL 341


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 356/611 (58%), Gaps = 51/611 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           WN+++ G+++     +DA  ++  +      PD  ++  +L      S   +  F   Q 
Sbjct: 87  WNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 65  LPI---KDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIECGQLDK 119
             +    D    N +I+ + + + +  AR +F  L +PE+  VSW+A++S Y + G+  +
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205

Query: 120 AVELFK-----------VAPVKSVVAWT----------------------------AMIS 140
           A+E+F            VA V  + A+T                            ++ +
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G+V  A+ LFD+M + NL+ WNAMI+GY +N +A + + +   MI   +RP+  S
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           ++S +  C+ + SL+  + +++ V +S    D    + LI M+ KCG +E A  +F    
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            +DVV W+AMI GY  HG+  +A+ L+  M+  G+ P+ +TF+ LL+ACNH+G+V  G  
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +F+ M  D+ I  +  HY C++DLLGRAG L +A ++IK MP +P   ++G LLSAC+ H
Sbjct: 446 FFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           + ++L E+AA  LF+++P+N  G YVQL+N+YAA + WD VA +R+ MKE  + K  G S
Sbjct: 505 RHVELGEYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           W+EV   +  FR GD+ HP    I  +++ +E R+K  G+V + + +LH + +E  E+ L
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSE++AIA+GLI  P GTP+R+ KNLR C +CH ATK IS +  REI+VRDT RFHHF
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHF 683

Query: 561 KDGTCSCGDYW 571
           KDG CSCGDYW
Sbjct: 684 KDGVCSCGDYW 694



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 4/243 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I     FG +  A ++FD++P   +  WNA+I GY  N+  +D L +   M    + 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ +   +L  CS LS LQ+G+ VH  VF+     D      LI++Y KC  L  A  +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 256 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           F  L +  + +V+W A++S YAQ+G+  +AL +F +M+   +KPD +  V++L A     
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            +  G     S+V   G+  +PD    +  +  + G++  A  L  KM   P   ++  +
Sbjct: 237 DLKQGRSIHASVVK-MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAM 294

Query: 374 LSA 376
           +S 
Sbjct: 295 ISG 297



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S  +S++   +H + L   KQ+H  +    L      +T LI      GD+  A ++F +
Sbjct: 22  SFYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           + R  +  WNA+I GY+++   + AL ++  M+   + PDS TF  LL AC+    + +G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            ++  + V   G  A       ++ L  +  +L  A  + + +P  P+  I
Sbjct: 139 -RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTI 187



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 107/283 (37%), Gaps = 67/283 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  ++A ++F ++   DV                      
Sbjct: 283 MKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINKDVR--------------------- 320

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQ 116
                   DT S  + IS   Q  ++ +AR ++  +   +        SA+I  + +CG 
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           ++ A  +F     + VV W+AMI GY   G+                             
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR----------------------------- 404

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
             A + + L R M   G+ PN  +   +L+ C+H   ++ G      +    +       
Sbjct: 405 --AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHY 462

Query: 237 TPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQH 277
             +I +  + G L+ A ++   + +Q   V  W A++S   +H
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKH 504


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 347/617 (56%), Gaps = 48/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-------------------PDVVSY 41
           ++++    +N ++ G+AK  G  + A ELF ++ Q                   P+ +++
Sbjct: 219 LHIRDVSTFNVMVGGYAKS-GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAW 277

Query: 42  NIMLSCILLNS---DDVVAAFDF----------------FQRLPIKDTASWNTMISGFVQ 82
              +    +N+   DD+  A                   F  + ++D  SW  MI G+ +
Sbjct: 278 GKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAE 337

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVA 134
             N+  A  LF  M E+    + +++  +++       L+ A E+     +      ++ 
Sbjct: 338 NGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLV 397

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA++  Y K G +  A ++FD MP +++V+W+AMI  YVEN +  +  +   +M    I
Sbjct: 398 STALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNI 457

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +  ++L  C HL +L +G +++    K+ L         LI M  K G +E A  
Sbjct: 458 EPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARY 517

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  + R+DV+TWNAMI GY+ HG   +AL LFD+M  E  +P+S+TFV +L AC+ AG 
Sbjct: 518 IFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGF 577

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           VD G ++F  ++   GI      Y CMVDLLGRAG+L EA  LIK MP KP  +I+ +LL
Sbjct: 578 VDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLL 637

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            ACR+H  LD+AE AA     ++P + A  YVQL+++YAA   W++VA++R  M+   + 
Sbjct: 638 VACRIHGNLDVAERAAERCLMIDPYDGA-VYVQLSHMYAAAGMWENVAKVRKVMESRGIR 696

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K  G +WIEV   VH F   DR HP +  I+ +L  L   +K  GY+P  +  LH VGE+
Sbjct: 697 KEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQ 756

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE+ + +HSEKLAIA+G++ +P GTPIR++KNLRVC DCH A+K+IS +  REII RD 
Sbjct: 757 QKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDA 816

Query: 555 TRFHHFKDGTCSCGDYW 571
           +RFHHFKDG CSCGDYW
Sbjct: 817 SRFHHFKDGVCSCGDYW 833



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 187/369 (50%), Gaps = 47/369 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSY-NIMLSCIL--------- 49
           KT V WN+++AG+A Q G +K+A  LF    D+  +P ++++ +++ +C           
Sbjct: 121 KTVVTWNALIAGYA-QVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKE 179

Query: 50  LNSDDVVAAF--DF----------------------FQRLPIKDTASWNTMISGFVQKKN 85
           +++  V A F  DF                      F  L I+D +++N M+ G+ +  +
Sbjct: 180 VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD 239

Query: 86  MAKARDLFLAMPE----KNSVSWSAMISG--YIECGQLDKAV--ELFKVAPVKSVVAWTA 137
             KA +LF  M +     N +S+ +++ G    E     KAV  +      V  +   T+
Sbjct: 240 WEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATS 299

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y   G ++ A ++FD M  +++V+W  MI GY EN   ED   L   M   GI+P+
Sbjct: 300 LIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPD 359

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   ++  C+  ++L   +++H  V  +    D    T L+ MY KCG ++DA ++F 
Sbjct: 360 RITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFD 419

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            + R+DVV+W+AMI  Y ++G G +A   F  MK   ++PD +T++ LL AC H G +D+
Sbjct: 420 AMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDV 479

Query: 318 GIQYFDSMV 326
           G++ +   +
Sbjct: 480 GMEIYTQAI 488



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 159/336 (47%), Gaps = 52/336 (15%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           NT+I  +    N+ +AR +F ++  K  V+W+A+I+GY + G + +A  LF+        
Sbjct: 96  NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155

Query: 126 -------------------------------VAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                             V      TA++S Y+K G +D A ++
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD +  +++ T+N M+ GY ++   E   +L   M  +G++PN  S  S+L GC    +L
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEAL 275

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             GK VH     + L  D    T LI MY  CG +E A ++F  ++ +DVV+W  MI GY
Sbjct: 276 AWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGY 335

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC------NHAGLVDLGIQYFDSMVND 328
           A++G  E A  LF  M++EG++PD IT++ ++ AC      NHA       +   S V+ 
Sbjct: 336 AENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA-------REIHSQVDI 388

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G        T +V +  + G + +A  +   MP +
Sbjct: 389 AGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRR 424



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 140/298 (46%), Gaps = 45/298 (15%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +I  Y   G V  A ++FD +  K +VTWNA+IAGY +    ++   L R M+  G+ 
Sbjct: 96  NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +  SVL  CS  + L  GK+VH  V  +    D    T L+SMY K G ++DA ++
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL--------- 306
           F  +  +DV T+N M+ GYA+ G  EKA  LF +M+  G+KP+ I+F+++L         
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEAL 275

Query: 307 -------LACNHAGLVDLGIQYFDSMVNDYGIAAKPD---------------HYTCMVDL 344
                    C +AGLVD  I+   S++  Y      +                +T M++ 
Sbjct: 276 AWGKAVHAQCMNAGLVD-DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEG 334

Query: 345 LGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC----------RVHKRLDLAEFA 389
               G + +A  L   M     +P    +  +++AC           +H ++D+A F 
Sbjct: 335 YAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG 392



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 37/270 (13%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L    LGKQV   + +     +   L  LI +Y  CG++ +A ++F  ++ K VVTW
Sbjct: 67  CTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTW 126

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVD 316
           NA+I+GYAQ G  ++A  LF +M DEG++P  ITF+++L AC+           HA +V 
Sbjct: 127 NALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVT 186

Query: 317 LG----IQYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDL 357
            G     +   ++V+ Y      D                +  MV    ++G   +A +L
Sbjct: 187 AGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFEL 246

Query: 358 IKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
             +M     KP    F ++L  C   + L   +       N    +       L  +Y  
Sbjct: 247 FYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTT 306

Query: 415 MKKWDDVARIRLSMKENNVVK----MPGYS 440
               +   R+  +MK  +VV     + GY+
Sbjct: 307 CGSIEGARRVFDNMKVRDVVSWTVMIEGYA 336


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/604 (39%), Positives = 345/604 (57%), Gaps = 42/604 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WNS+LAG+    G +++A++++D++P+ +V++ N M+  +     +V  A   F  + 
Sbjct: 193 VSWNSMLAGYV-LVGNVEEAKDVYDRMPERNVIASNSMI-VLFGKKGNVEEACKLFNEMK 250

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----------------------------- 97
            KD  SW+ +IS + Q +   +A  LF  M                              
Sbjct: 251 QKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKL 310

Query: 98  ----------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
                     E      +A+I  Y  C ++  A +LF  +     ++W +MISGY+K G+
Sbjct: 311 VHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGE 370

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           ++ A  LFD MP K+ V+W+AMI+GY +     + L L + M   G +P+ + L SV+  
Sbjct: 371 IEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISA 430

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+HL++L  GK +H  + K+ L  +    T LI+MY K G +EDA ++F  ++ K V TW
Sbjct: 431 CTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTW 490

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NA+I G A +G  +K+L+ F +MK+ G+ P+ ITFVA+L AC H GLVD G ++F+SM+ 
Sbjct: 491 NALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQ 550

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           ++ I     HY CMVDLLGRAG L EA +LI+ MP  P  + +G LL AC+ +   +  E
Sbjct: 551 EHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGE 610

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
                L  L+P +  G  V L+NIYA+   W DV  +R  M+++ VVK PG S IE    
Sbjct: 611 RIGRKLVELHP-DHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGR 669

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           VHEF +GD+ HP+   I   L E+ K++KL GY PD       + EE KE  L  HSEKL
Sbjct: 670 VHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKL 729

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           AIAFGLI +   TPIR+ KNLR+C DCH A K IS    REI+VRD  RFHHFK G+CSC
Sbjct: 730 AIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSC 789

Query: 568 GDYW 571
            DYW
Sbjct: 790 MDYW 793



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 165/327 (50%), Gaps = 32/327 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    NT+I+ +    N++ AR +F      + VSW++M++GY+  G +++A +++   P
Sbjct: 160 DVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMP 219

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            ++V+A  +MI  + K G V+ A KLF+EM  K+LV+W+A+I+ Y +N   E+ L L + 
Sbjct: 220 ERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKE 279

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   GI  +   + SVL  CS L  +  GK VH LV K  +         LI MY  C +
Sbjct: 280 MNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEE 339

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD---------------- 292
           +  A KLF E    D ++WN+MISGY + G+ EKA  LFD M D                
Sbjct: 340 VVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQ 399

Query: 293 ---------------EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
                          EG KPD    V+++ AC H   +D G ++  + +   G+      
Sbjct: 400 DRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKNGLKINIIL 458

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            T ++++  + G + +A+++ K +  K
Sbjct: 459 GTTLINMYMKLGCVEDALEVFKGLEEK 485



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 161/362 (44%), Gaps = 19/362 (5%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           ++T VN  + L        ++  AQ+LF +    D +S+N M+S   +   ++  A   F
Sbjct: 320 IETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISG-YVKCGEIEKARALF 378

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD 118
             +P KD  SW+ MISG+ Q+    +   LF  M     + +     ++IS       LD
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALD 438

Query: 119 KA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           +       + K     +++  T +I+ YMK G V+ A ++F  +  K + TWNA+I G  
Sbjct: 439 QGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLA 498

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDT 233
            N   +  LK    M   G+ PN  +  +VL  C H+  +  G +  + ++ +  +  + 
Sbjct: 499 MNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNI 558

Query: 234 TALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                ++ +  + G L++A +L   +    DV TW A++    ++G  E   R+  K+ +
Sbjct: 559 KHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVE 618

Query: 293 EGMKPDSITFVALL--LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             + PD   F  LL  +  +    VD  +     M+  +G+   P     M++  GR  +
Sbjct: 619 --LHPDHDGFNVLLSNIYASKGNWVD--VLEVRGMMRQHGVVKTPG--CSMIEAHGRVHE 672

Query: 351 LV 352
            +
Sbjct: 673 FL 674



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 58/293 (19%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMI- 108
           ++  ++  F  +   +    NTM+ G++Q+ +  KA  ++  M E N    + ++  +  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 109 SGYIECGQLD-KAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           S  I   + D K ++  + KV     V     +I+ Y   G +  A K+FD     ++V+
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN+M+AGYV                              L+G     +++  K V+  + 
Sbjct: 195 WNSMLAGYV------------------------------LVG-----NVEEAKDVYDRMP 219

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +    ++  A   +I ++ K G++E+ACKLF E+++KD+V+W+A+IS Y Q+   E+AL 
Sbjct: 220 E----RNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALI 275

Query: 286 LFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVN 327
           LF +M   G+  D +  +++L AC+           H  +V +GI+ + ++ N
Sbjct: 276 LFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQN 328


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/596 (38%), Positives = 341/596 (57%), Gaps = 47/596 (7%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMIS 78
           +++DA  +FD++ +PDVVS++ +++        D+    F       ++ +  SWN MI+
Sbjct: 164 QIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIA 223

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSVSW---------------------------- 104
           GF      ++A  +FL M      P+  ++S                             
Sbjct: 224 GFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVS 283

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                SA+I  Y +C    +  ++F       V +  A I G  + G+V+ + +LF ++ 
Sbjct: 284 DKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLK 343

Query: 160 TK----NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
            +    N+V+W +MIA   +N    + L+L R M   G++PN+ ++  +L  C ++++L 
Sbjct: 344 DQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALM 403

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            GK  H    +  +  D    + LI MY KCG ++ +   F  I  K++V WNA+I+GYA
Sbjct: 404 HGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYA 463

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            HGK ++A+ +FD M+  G KPD I+F  +L AC+ +GL + G  YF+SM + YGI A+ 
Sbjct: 464 MHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARV 523

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           +HY CMV LL RAGKL +A  +I++MP  P   ++G LLS+CRVH  + L E AA  LF 
Sbjct: 524 EHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFE 583

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L P+N  G Y+ L+NIYA+   W++V R+R  MK   + K PG SWIEV   VH   +GD
Sbjct: 584 LEPSN-PGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGD 642

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
           + HP++  I EKL +L   MK  GY P++ F L  V E+ KEQ+L  HSEKLA+ FGL+ 
Sbjct: 643 KSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLN 702

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            P G P++V KNLR+CGDCH   K+IS+ E+REI VRDT RFHHFK+G CSCGDYW
Sbjct: 703 TPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 167/344 (48%), Gaps = 18/344 (5%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFV 81
           DA  + D +P+P+V S++ ++           A   F Q L    + D     + +    
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 82  QKKNMAKARDLF----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
               +  AR +     ++  + +S   S+++  YI+C Q+  A  +F       VV+W+A
Sbjct: 126 GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSA 185

Query: 138 MISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +++ Y + G VD A++LF EM       NL++WN MIAG+  +    + + +   M   G
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             P+ +++SSVL     L  L +G  +H  V K  L  D    + LI MY KC    +  
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F ++   DV + NA I G +++G+ E +LRLF ++KD+GM+ + +++ +++  C+  G
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 314 LVDLGIQYFDSMVNDYGIAA-KPDHYT--CMVDLLGRAGKLVEA 354
                ++ F  M     IA  KP+  T  C++   G    L+  
Sbjct: 366 RDIEALELFREM----QIAGVKPNSVTIPCLLPACGNIAALMHG 405



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 53/233 (22%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAA 58
            K  V WN+V+AG+A   GK K+A E+FD + +    PD++S+  +LS    +       
Sbjct: 449 TKNLVCWNAVIAGYA-MHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG------ 501

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                 L  + +  +N+M S +                 E     ++ M++     G+L+
Sbjct: 502 ------LTEEGSYYFNSMSSKY---------------GIEARVEHYACMVTLLSRAGKLE 540

Query: 119 KAVELFKVAPVK-SVVAWTAMISGYMKFGKVDL----AEKLFDEMPTK--NLVTWNAMIA 171
           +A  + +  PV      W A++S       V L    AEKLF+  P+   N +  + + A
Sbjct: 541 QAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYA 600

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
              +  W E   ++  MM   G+R N         GCS    +++  +VH L+
Sbjct: 601 S--KGMWNEVN-RVRDMMKNKGLRKNP--------GCSW---IEVKNKVHMLL 639



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 200 SLSSVLLGC--SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           S+   +  C  S  +SL   +Q H  + K+ L  DT   T L+S Y       DA  +  
Sbjct: 13  SVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +   +V +++ +I  +++  +   AL  F +M   G+ PD+    + + AC  AGL  L
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLSAL 130


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 356/611 (58%), Gaps = 51/611 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           WN+++ G+++     +DA  ++  +      PD  ++  +L      S   +  F   Q 
Sbjct: 87  WNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 65  LPI---KDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIECGQLDK 119
             +    D    N +I+ + + + +  AR +F  L +PE+  VSW+A++S Y + G+  +
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205

Query: 120 AVELFK-----------VAPVKSVVAWT----------------------------AMIS 140
           A+E+F            VA V  + A+T                            ++ +
Sbjct: 206 ALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G+V  A+ LFD+M + NL+ WNAMI+GY +N +A + + +   MI   +RP+  S
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           ++S +  C+ + SL+  + +++ V +S    D    + LI M+ KCG +E A  +F    
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            +DVV W+AMI GY  HG+  +A+ L+  M+  G+ P+ +TF+ LL+ACNH+G+V  G  
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +F+ M  D+ I  +  HY C++DLLGRAG L +A ++IK MP +P   ++G LLSAC+ H
Sbjct: 446 FFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           + ++L E+AA  LF+++P+N  G YVQL+N+YAA + WD VA +R+ MKE  + K  G S
Sbjct: 505 RHVELGEYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           W+EV   +  FR GD+ HP    I  +++ +E R+K  G+V + + +LH + +E  E+ L
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSE++AIA+GLI  P GTP+R+ KNLR C +CH ATK IS +  REI+VRDT RFHHF
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHF 683

Query: 561 KDGTCSCGDYW 571
           KDG CSCGDYW
Sbjct: 684 KDGVCSCGDYW 694



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 4/243 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I     FG +  A ++FD++P   +  WNA+I GY  N+  +D L +   M    + 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ +   +L  CS LS LQ+G+ VH  VF+     D      LI++Y KC  L  A  +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 256 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           F  L +  + +V+W A++S YAQ+G+  +AL +F  M+   +KPD +  V++L A     
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            +  G     S+V   G+  +PD    +  +  + G++  A  L  KM   P   ++  +
Sbjct: 237 DLKQGRSIHASVVK-MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAM 294

Query: 374 LSA 376
           +S 
Sbjct: 295 ISG 297



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S  +S++   +H + L   KQ+H  +    L      +T LI      GD+  A ++F +
Sbjct: 22  SFYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           + R  +  WNA+I GY+++   + AL ++  M+   + PDS TF  LL AC+    + +G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            ++  + V   G  A       ++ L  +  +L  A  + + +P  P+  I
Sbjct: 139 -RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTI 187



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 67/283 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  ++A ++F ++   DV                      
Sbjct: 283 MKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINKDVR--------------------- 320

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQ 116
                   DT S  + IS   Q  ++ +AR ++  +   +        SA+I  + +CG 
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           ++ A  +F     + VV W+AMI GY   G+                             
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR----------------------------- 404

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
             A + + L R M   G+ PN  +   +L+ C+H   ++ G     L+    +       
Sbjct: 405 --AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHY 462

Query: 237 TPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQH 277
             +I +  + G L+ A ++   + +Q   V  W A++S   +H
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKH 504


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 344/572 (60%), Gaps = 11/572 (1%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
            W+ ++  +AK  G + DA+ +FD++   +VV YN M++  LL    V  A   F+ +  
Sbjct: 186 TWSPLVDMYAKM-GLIGDAKRVFDEMVVKNVVMYNTMITG-LLRCKMVEEARGVFEAMVD 243

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQL-----DKAV 121
           +D+ +W TM++G  Q    ++A D+F  M  E   +      S    CG L      K +
Sbjct: 244 RDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQI 303

Query: 122 ELFKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
             + +  +   ++   +A++  Y K   + LAE +F  M  KN+++W AMI GY +N   
Sbjct: 304 HAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCG 363

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E+ +++   M   GI+PN  +L SV+  C++L+SL+ G Q H +   S L    T  + L
Sbjct: 364 EEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSAL 423

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +++Y KCG +EDA +LF E+   D V++ A++SGYAQ GK ++ + LF+KM  +G+KP+ 
Sbjct: 424 VTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNG 483

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TF+ +L AC+ +GLV+ G  YF SM  D+GI    DHYTCM+DL  R+G+L EA + I+
Sbjct: 484 VTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIR 543

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
           +MP  P    + TLLSACR+   +++ ++AA NL   +P N A  YV L +++A+  +W 
Sbjct: 544 QMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPAS-YVLLCSMHASKGEWS 602

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           +VA +R  M++  V K PG SWI+    VH F + D+ HP   +I+EKL+ L  +M   G
Sbjct: 603 EVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEG 662

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y PD+   LH V +  K  +L  HSEKLAIAFGLI VP   PIRV KNLRVC DCH ATK
Sbjct: 663 YKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATK 722

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +IS I  R+I+VRD  RFH F +G CSCGD+W
Sbjct: 723 FISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 183/404 (45%), Gaps = 51/404 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD-FFQRLPIK 68
           N +L  +A+  G+L  A+ LFD +P P++ + N +LS   L    ++   D  F  +P +
Sbjct: 49  NHLLTAYARS-GRLPLARRLFDAMPDPNLFTRNALLSA--LAHARLLPDMDRLFASMPQR 105

Query: 69  DTASWNTMISGF----------------------VQKKNMAKARDLFLAMPEKNSVSWSA 106
           D  S+N +I+GF                      V    +  +R     M    S     
Sbjct: 106 DAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDR 165

Query: 107 MISGYIEC------------------------GQLDKAVELFKVAPVKSVVAWTAMISGY 142
            +   + C                        G +  A  +F    VK+VV +  MI+G 
Sbjct: 166 ALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGL 225

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           ++   V+ A  +F+ M  ++ +TW  M+ G  +N    + L + R M   G+  +  +  
Sbjct: 226 LRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFG 285

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S+L  C  L++ + GKQ+H    ++    +    + L+ MY KC  +  A  +F  +  K
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           ++++W AMI GY Q+G GE+A+R+F +M+ +G+KP+  T  +++ +C +   ++ G Q F
Sbjct: 346 NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ-F 404

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             M    G+       + +V L G+ G + +A  L  +MPF  Q
Sbjct: 405 HCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQ 448


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/511 (43%), Positives = 313/511 (61%), Gaps = 7/511 (1%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
           + +  SW  MISGF+Q     +A DLF  M  K    N  ++S +++        +   +
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 418

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           + K    +S    TA++  Y+K GKV+ A K+F  +  K++V W+AM+AGY +    E  
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           +K+   +   GI+PN  + SS+L  C+   +S+  GKQ H    KS L       + L++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K G++E A ++F   + KD+V+WN+MISGYAQHG+  KAL +F +MK   +K D +T
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+ +  AC HAGLV+ G +YFD MV D  IA   +H +CMVDL  RAG+L +A+ +I+ M
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P      I+ T+L+ACRVHK+ +L   AA  +  + P ++A  YV L+N+YA    W + 
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA-YVLLSNMYAESGDWQER 717

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           A++R  M E NV K PGYSWIEV    + F +GDR HP    I+ KL++L  R+K  GY 
Sbjct: 718 AKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYE 777

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PD  + L  + +E KE +L  HSE+LAIAFGLI  P G+P+ + KNLRVCGDCH   K I
Sbjct: 778 PDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLI 837

Query: 542 SAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 571
           + IE+REI+VRD+ RFHHF  DG CSCGD+W
Sbjct: 838 AKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 58/350 (16%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF---DFFQRLP- 66
           S+L GF++  G+ ++A+ LF  I +       + + C + +S   V+A    + F R   
Sbjct: 63  SLLFGFSRD-GRTQEAKRLFLNIHR-----LGMEMDCSIFSSVLKVSATLCDELFGRQLH 116

Query: 67  --------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                   + D +   +++  +++  N    R +F  M E+N V+W+ +ISGY      D
Sbjct: 117 CQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMND 176

Query: 119 KAVELF--------------------------------KVAPV-------KSVVAWTAMI 139
           + + LF                                +V  V       K++    ++I
Sbjct: 177 EVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLI 236

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           + Y+K G V  A  LFD+   K++VTWN+MI+GY  N    + L +   M    +R + S
Sbjct: 237 NLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSES 296

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           S +SV+  C++L  L+  +Q+H  V K     D    T L+  Y KC  + DA +LF EI
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356

Query: 260 Q-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
               +VV+W AMISG+ Q+   E+A+ LF +MK +G++P+  T+  +L A
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 162/333 (48%), Gaps = 28/333 (8%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKN 100
           N+ L C      +V  A   F +  +K   +WN+MISG+       +A  +F +M     
Sbjct: 237 NLYLKC-----GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 101 SVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVAW-----TAMISGYMKFGKVDLAEK 153
            +S S+  S    C  L   +  E    + VK    +     TA++  Y K   +  A +
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 154 LFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           LF E+    N+V+W AMI+G+++N   E+ + L   M   G+RPN  + S +L     +S
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
                 +VH  V K+   + +T  T L+  Y K G +E+A K+F  I  KD+V W+AM++
Sbjct: 412 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL-VDLGIQYFDSMVNDYGI 331
           GYAQ G+ E A+++F ++   G+KP+  TF ++L  C      +  G Q+     + + I
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF-----HGFAI 522

Query: 332 AAKPDHYTC----MVDLLGRAGKLVEAVDLIKK 360
            ++ D   C    ++ +  + G +  A ++ K+
Sbjct: 523 KSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 555



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 9/320 (2%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSW 104
           ++S  +  A + F + P +D  S+ +++ GF +     +A+ LFL      M    S+  
Sbjct: 38  VSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97

Query: 105 SAMISGYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           S +      C +L       +  K   +  V   T+++  YMK        K+FDEM  +
Sbjct: 98  SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N+VTW  +I+GY  NS  ++ L L   M   G +PN+ + ++ L   +       G QVH
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 217

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            +V K+ L K       LI++Y KCG++  A  LF + + K VVTWN+MISGYA +G   
Sbjct: 218 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 277

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +AL +F  M+   ++    +F +++  C +   +    Q   S+V  YG     +  T +
Sbjct: 278 EALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK-YGFLFDQNIRTAL 336

Query: 342 VDLLGRAGKLVEAVDLIKKM 361
           +    +   +++A+ L K++
Sbjct: 337 MVAYSKCTAMLDALRLFKEI 356



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A  LFD+ P ++  ++ +++ G+  +   ++  +L   +  LG+  + S  SSVL   + 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L     G+Q+H    K     D +  T L+  Y K  + +D  K+F E++ ++VVTW  +
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ISGYA++   ++ L LF +M++EG +P+S TF A L      G+   G+Q    +V + G
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-G 224

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +         +++L  + G + +A  L  K   K
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 150/364 (41%), Gaps = 108/364 (29%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSD----- 53
           K  V W+++LAG+A Q G+ + A ++F ++ +    P+  +++ +L+ C   N+      
Sbjct: 457 KDIVAWSAMLAGYA-QTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515

Query: 54  -----------------------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                        ++ +A + F+R   KD  SWN+MISG+ Q  
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575

Query: 85  NMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF-------KVAPVKSVV 133
              KA D+F  M ++    + V++  + +     G +++  + F       K+AP K   
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE-- 633

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             + M+  Y + G+++ A K+ + MP                                  
Sbjct: 634 HNSCMVDLYSRAGQLEKAMKVIENMPN--------------------------------- 660

Query: 194 IRPNASSL-SSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             P  S++  ++L  C      +LG+    +++   P  +D+ A   L +MY + GD ++
Sbjct: 661 --PAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP--EDSAAYVLLSNMYAESGDWQE 716

Query: 252 ACKLFLEIQRKDV-----VTW-------NAMISGYAQHG-KGEKALRLFD---KMKDEGM 295
             K+   +  ++V      +W        + ++G   H  K +  ++L D   ++KD G 
Sbjct: 717 RAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGY 776

Query: 296 KPDS 299
           +PD+
Sbjct: 777 EPDT 780


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/468 (46%), Positives = 295/468 (63%), Gaps = 1/468 (0%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           W+A+I G+   G +  A +LF   P KS+V+ TAM++ Y K G++D A  LFD M  ++ 
Sbjct: 96  WTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG 155

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V WN MI GY +N    + L L R M+    +PN  ++ SVL  C  L +L+ G+ VH  
Sbjct: 156 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 215

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           +  + +  +    T L+ MY KCG LEDA  +F +I  KDVV WN+MI GYA HG  ++A
Sbjct: 216 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEA 275

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           L+LF  M   G+ P +ITF+ +L AC H+G V  G   F+ M ++YGI  K +HY CMV+
Sbjct: 276 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 335

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAG + +A +L+K M  +P P ++GTLL ACR+H ++ L E     L + N AN +G
Sbjct: 336 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN-SG 394

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            Y+ L+NIYAA+  WD VAR+R  MK++ V K PG S IEV   VHEF +G   HP+   
Sbjct: 395 TYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKE 454

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I+  L+E+   +K  GY P  +  LH +GE  KE+ L  HSEKLAIAFGLI    GT I+
Sbjct: 455 IYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIK 514

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KNLRVC DCH  TK IS I  R+I+VRD  RFHHF +G+CSCGDYW
Sbjct: 515 IVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 157/343 (45%), Gaps = 26/343 (7%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           W +++ G A  RG +  AQ+LFD +P+  +VS   ML+C      ++ AA   F  +  +
Sbjct: 96  WTAIIHGHA-LRGDVVSAQQLFDTMPEKSLVSLTAMLTC-YAKHGELDAARVLFDGMEER 153

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELF 124
           D   WN MI G+ Q     +A  LF  M     + N V+  +++S   + G L+    + 
Sbjct: 154 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH 213

Query: 125 KVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                     +V   TA++  Y K G ++ A  +FD++  K++V WN+MI GY  + +++
Sbjct: 214 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQ 273

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L+L + M  +G+ P   +   +L  C H   +  G  +   +      KD   + P I
Sbjct: 274 EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM------KDEYGIEPKI 327

Query: 241 SMY-C------KCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             Y C      + G +E A +L   +    D V W  ++     HGK     ++ + + D
Sbjct: 328 EHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 387

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           + +  +S T++ L       G  D G+    +M+ D G+  +P
Sbjct: 388 QNL-ANSGTYILLSNIYAAVGNWD-GVARLRTMMKDSGVKKEP 428



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H ++F+  L         L   Y   G L+ +  LF   Q   V  W A+I G+A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
               A +LFD M ++ +    ++  A+L      G +D     FD M    G+      +
Sbjct: 108 DVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-----W 158

Query: 339 TCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
             M+D   + G   EA+ L ++M     KP      ++LSAC
Sbjct: 159 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 18/215 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFD 60
           ++  V+  + L     + G L+DA+ +FDKI   DVV++N M+    ++  S + +  F 
Sbjct: 221 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 280

Query: 61  FFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
              R+ +  T  ++  ++S       + +  D+F  M ++  +      +  M++     
Sbjct: 281 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRA 340

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           G +++A EL K   ++   V W  ++      GK+ L EK+ + +  +NL      I   
Sbjct: 341 GHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI--L 398

Query: 174 VENSWAE----DGLKLLRMMI---GLGIRPNASSL 201
           + N +A     DG+  LR M+   G+   P  SS+
Sbjct: 399 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 433


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/657 (37%), Positives = 355/657 (54%), Gaps = 91/657 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + +++ V  ++ L  F  + G L DA+E+FDK+ + DVV++N M+S   L+      ++D
Sbjct: 148 LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHE----GSYD 203

Query: 61  FFQRLPIK-----------------DTASWNTM-----ISGFVQKKNMAK---------- 88
              RL ++                   A  N++     I GF  ++              
Sbjct: 204 EVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILD 263

Query: 89  ----------ARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELF------------- 124
                     AR +F  M   KN V+WSAM+  Y+ C  + +A+ELF             
Sbjct: 264 VYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVL 323

Query: 125 -----------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
                                        K   V  ++    ++S Y K G ++ A + F
Sbjct: 324 SAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFF 383

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           +EM  ++ V++ A+I+GYV+N  +E+GL++   M   GI P  ++L+SVL  C+HL+ L 
Sbjct: 384 NEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLH 443

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            G   H          DT     LI MY KCG ++ A K+F  + ++ +V+WN MI  Y 
Sbjct: 444 YGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYG 503

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            HG G +AL LFD M+ EG+KPD +TF+ L+ AC+H+GLV  G  +F++M  D+GI  + 
Sbjct: 504 IHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRM 563

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           +HY CMVDLL RAG   E    I+KMP +P   ++G LLSACRV+K ++L E  +  +  
Sbjct: 564 EHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQK 623

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L P  + G +V L+N+Y+A+ +WDD A++R + KE    K PG SWIE+  VVH F  G 
Sbjct: 624 LGP-ESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGG 682

Query: 456 -RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
            R HP+L  I  KL EL   MK  GY  +  +    V EE KE++LL+HSEKLAIAFG++
Sbjct: 683 YRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGIL 742

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +     I V KNLRVCGDCH A K+IS + KR+I VRD +RFHHFKDG C+CGD+W
Sbjct: 743 SLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           V +  ++  Y+   ++ +A  +FD+MP   KN+V WN +I  Y  N   E+ + L   M+
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G GI PN  +   VL  CS L     G+++H  + +  L  +    T L+  Y KCG L+
Sbjct: 112 GYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLD 171

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           DA ++F ++ ++DVV WN+MISG++ H G  ++  RL  +M+++ + P+S T V +L A
Sbjct: 172 DAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPA 229



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 135/273 (49%), Gaps = 22/273 (8%)

Query: 62  FQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECG 115
           F ++P   K+   WN +I  +       +A DL+  M       N  ++  ++     C 
Sbjct: 74  FDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKA---CS 130

Query: 116 QLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            L +A E       + ++    +V   TA++  Y K G +D A+++FD+M  +++V WN+
Sbjct: 131 ALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNS 190

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI+G+  +  + D +  L + +   + PN+S++  VL   + ++SL+ GK++H    +  
Sbjct: 191 MISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRG 250

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
              D    T ++ +Y KC  ++ A ++F +    K+ VTW+AM+  Y       +AL LF
Sbjct: 251 FVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELF 310

Query: 288 DK---MKDEGMKPDSITFVALLLACNHAGLVDL 317
            +   +KD+ +   ++T   ++  C  A L DL
Sbjct: 311 CQLLMLKDDVIVLSAVTLATVIRVC--ANLTDL 341



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 54/281 (19%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT-------PLISMYC 244
           L  R +    + +L  C    SL  GK +HQ + K       T LT        L+ +Y 
Sbjct: 3   LRTRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYI 62

Query: 245 KCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
            C +L+ A  +F ++  + K+VV WN +I  YA +G  E+A+ L+ KM   G+ P+  TF
Sbjct: 63  ACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTF 122

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             +L AC+       G +     +    + +     T +VD   + G L +A ++  KM 
Sbjct: 123 PFVLKACSALKEASEG-REIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM- 180

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
                            HKR  +A  + ++ F+L+  +                 +D+VA
Sbjct: 181 -----------------HKRDVVAWNSMISGFSLHEGS-----------------YDEVA 206

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTV-----VHEFRSGDRVH 458
           R+ + M +N+V   P  S I VG +     V+  R G  +H
Sbjct: 207 RLLVQM-QNDV--SPNSSTI-VGVLPAVAQVNSLRHGKEIH 243


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/549 (41%), Positives = 320/549 (58%), Gaps = 41/549 (7%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  L  ++T  +N+++ G +    +  A  LF  M EK+SVSW+AMI G  + G   +A+
Sbjct: 197 FYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAI 255

Query: 122 ELFKVAPVKS---------------------------------------VVAWTAMISGY 142
           E F+   V+                                        +   +A+I  Y
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K   +  A+ +FD M  KN+V+W AM+ GY +   AE+ +K+   M   GI P+  +L 
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
             +  C+++SSL+ G Q H     S L    T    L+++Y KCGD++D+ +LF E+  +
Sbjct: 376 QAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D V+W AM+S YAQ G+  + ++LFDKM   G+KPD +T   ++ AC+ AGLV+ G +YF
Sbjct: 436 DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
             M ++YGI     HY+CM+DL  R+G+L EA+  I  MPF P    + TLLSACR    
Sbjct: 496 KLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           L++ ++AA +L  L+P + AG Y  L++IYA+  KWD VA++R  M+E NV K PG SWI
Sbjct: 556 LEIGKWAAESLIELDPHHPAG-YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           +    +H F + D   P L  I+ KL+EL  ++   GY PD  F  H V E VK ++L +
Sbjct: 615 KWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNY 674

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSE+LAIAFGLI VP G PIRV KNLRVC DCH ATK+IS++  REI+VRD  RFH FKD
Sbjct: 675 HSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734

Query: 563 GTCSCGDYW 571
           GTCSCGD+W
Sbjct: 735 GTCSCGDFW 743



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 197/446 (44%), Gaps = 78/446 (17%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD-FFQR 64
           T  +N+++  +A  +     A+ +FD+IPQP++ S+N +L  +  +   +++  +  F++
Sbjct: 41  TFLYNNIVHAYALMKSSTY-ARRVFDRIPQPNLFSWNNLL--LAYSKAGLISEMESTFEK 97

Query: 65  LPIKDTASWNTMISGFVQKKNMAKA--------RDL-----------FLAMPEKNS-VSW 104
           LP +D  +WN +I G+     +  A        RD             L +   N  VS 
Sbjct: 98  LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157

Query: 105 SAMISG--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
              I G                    Y   G +  A ++F     ++ V + +++ G + 
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G ++ A +LF  M  K+ V+W AMI G  +N  A++ ++  R M   G++ +     SV
Sbjct: 218 CGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C  L ++  GKQ+H  + ++         + LI MYCKC  L  A  +F  +++K+V
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF-- 322
           V+W AM+ GY Q G+ E+A+++F  M+  G+ PD  T    + AC +   ++ G Q+   
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396

Query: 323 -------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEA 354
                        +S+V  YG     D                +T MV    + G+ VE 
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVET 456

Query: 355 VDLIKKM---PFKPQPAIFGTLLSAC 377
           + L  KM     KP       ++SAC
Sbjct: 457 IQLFDKMVQHGLKPDGVTLTGVISAC 482



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 154/356 (43%), Gaps = 43/356 (12%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +  + LP  +T  +N ++  +   K+   AR +F  +P+ N  SW+ ++  Y + G + +
Sbjct: 31  NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP---TKNL--VTWNAMIAGYV 174
               F+  P +  V W  +I GY   G V  A K ++ M    + NL  VT   M+    
Sbjct: 91  MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSS 150

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            N     G ++   +I LG        S +L   +++  +   K+    VF     ++T 
Sbjct: 151 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK----VFYGLDDRNTV 206

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               L+     CG +EDA +LF  ++ KD V+W AMI G AQ+G  ++A+  F +MK +G
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQ--------------YFDSMVNDYGIAAKPDHY-- 338
           +K D   F ++L AC   G ++ G Q              Y  S + D     K  HY  
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK 325

Query: 339 --------------TCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
                         T MV   G+ G+  EAV +   +++    P     G  +SAC
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/639 (38%), Positives = 348/639 (54%), Gaps = 79/639 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLN-SDDVVAAFDFFQRLPIK 68
           + L  F  + G L +AQ LF  +   DVV++N M++ C L    DD V      Q   I 
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207

Query: 69  DTASW------------------------------NTMISG------FVQKKNMAKARDL 92
             +S                               N ++ G      + + + +  AR +
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELF---------------------------- 124
           F  M  +N VSWSAMI GY+    + +A+ELF                            
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 125 ------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                       K+  V  ++    ++S Y K G +D A + FD M  K+ V+++A+++G
Sbjct: 328 LSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSG 387

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+N  A   L + RMM   GI P+ +++  VL  CSHL++LQ G   H  +       D
Sbjct: 388 CVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATD 447

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
           T     LI MY KCG +  A ++F  + R D+V+WNAMI GY  HG G +AL LF  +  
Sbjct: 448 TLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+KPD ITF+ LL +C+H+GLV  G  +FD+M  D+ I  + +H  CMVD+LGRAG + 
Sbjct: 508 LGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLID 567

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA   I+ MPF+P   I+  LLSACR+HK ++L E  +  + +L P  + G +V L+NIY
Sbjct: 568 EAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIY 626

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           +A  +WDD A IR++ K+  + K+PG SWIE+  +VH F  GD+ H +L  I+ KL+EL 
Sbjct: 627 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 686

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
             MK  GY  +  F    V EE KEQ+LL+HSEKLAIAFG++ +  G PI V KNLRVCG
Sbjct: 687 VEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCG 746

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K+++ I KREI VRD  RFHHFK+GTC+CGD+W
Sbjct: 747 DCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 95/165 (57%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y+   +V LA +LFDE+P  +++ WN +I  Y  N   +  + L   M+ LG+RPN  + 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             VL  CS L +++ G ++H       L  D    T L+  Y KCG L +A +LF  +  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           +DVV WNAMI+G + +G  + A++L  +M++EG+ P+S T V +L
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVL 217



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 164/367 (44%), Gaps = 17/367 (4%)

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKN 100
           L+ + L+ + VV A   F  +P      WN +I  +        A DL+ +M       N
Sbjct: 49  LTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPN 108

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFD 156
             ++  ++        ++  VE+   A +      V   TA++  Y K G +  A++LF 
Sbjct: 109 KYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFS 168

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            M  +++V WNAMIAG       +D ++L+  M   GI PN+S++  VL       +L  
Sbjct: 169 SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGH 228

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK +H    +          T L+ MY KC  L  A K+F  +  ++ V+W+AMI GY  
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVX 288

Query: 277 HGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAK 334
               ++AL LFD+M   + M P  +T  ++L AC  A L DL   +     +   G    
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC--AKLTDLSRGRKLHCYIIKLGXVLD 346

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-FGTLLSAC--RVHKRLDLAEFAAM 391
                 ++ +  + G + +A+     M   P+ ++ F  ++S C    +  + L+ F  M
Sbjct: 347 ILLGNTLLSMYAKCGVIDDAIRFFDXM--NPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 392 NLFNLNP 398
            L  ++P
Sbjct: 405 QLSGIDP 411



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C    SL   K++HQ   K+    D++ L  L  +Y  C  +  A +LF EI    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V+ WN +I  YA +G  + A+ L+  M   G++P+  T+  +L AC+    ++ G++   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
           S    +G+ +     T +VD   + G LVEA  L   M  +   A +  +++ C ++   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLC 191

Query: 384 D 384
           D
Sbjct: 192 D 192


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 347/623 (55%), Gaps = 56/623 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----------DKIPQPDVVSYNIMLSCILL 50
           M  +  V W  ++  FA Q G  +DA +LF          D+     V+S    L  + L
Sbjct: 16  MPERNLVTWTLMITRFA-QLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 74

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                         L +    S   M +      ++  +R +F  MPE N +SW+A+I+ 
Sbjct: 75  GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 134

Query: 111 YIECGQLDK-AVELF-----------------------------------------KVAP 128
           Y + G+ DK A+ELF                                          +A 
Sbjct: 135 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 194

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V  V    ++IS Y + G+++ A K FD +  KNLV++NA++ GY +N  +E+   L   
Sbjct: 195 VNCV--GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 252

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           +   GI  +A + +S+L G + + ++  G+Q+H  + K     +      LISMY +CG+
Sbjct: 253 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 312

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +E A ++F E++ ++V++W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L A
Sbjct: 313 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 372

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H G++  G ++F+SM  ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      
Sbjct: 373 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 432

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++ TLL ACRVH   +L   AA  +    P + A  Y+ L+N++A+  +W DV +IR SM
Sbjct: 433 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSM 491

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           KE N++K  G SWIEV   VH F  G+  HP+   I+++L +L  ++K  GY+PD +F L
Sbjct: 492 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVL 551

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
           H + EE KEQ L  HSEK+A+AFGLI      PIR+FKNLRVCGDCH A KYIS    RE
Sbjct: 552 HDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 611

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I+VRD+ RFHH K+G CSC DYW
Sbjct: 612 IVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 157/318 (49%), Gaps = 17/318 (5%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIE 113
           A+  F ++P ++  +W  MI+ F Q      A DLFL M     V    ++S+++S   E
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKF---GKVDLAEKLFDEMPTKNLVTW 166
            G L    +L     ++     V    +++  Y K    G VD + K+F++MP  N+++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 167 NAMIAGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            A+I  Y ++   + + ++L   MI   IRPN  S SSVL  C +LS    G+QV+    
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K  +         LISMY + G +EDA K F  +  K++V++NA++ GYA++ K E+A  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVD 343
           LF+++ D G+   + TF +LL      G +  G Q    ++       K +   C  ++ 
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG---GYKSNQCICNALIS 305

Query: 344 LLGRAGKLVEAVDLIKKM 361
           +  R G +  A  +  +M
Sbjct: 306 MYSRCGNIEAAFQVFNEM 323


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 347/623 (55%), Gaps = 56/623 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----------DKIPQPDVVSYNIMLSCILL 50
           M  +  V W  ++  FA Q G  +DA +LF          D+     V+S    L  + L
Sbjct: 11  MPERNLVTWTLMITRFA-QLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 69

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                         L +    S   M +      ++  +R +F  MPE N +SW+A+I+ 
Sbjct: 70  GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129

Query: 111 YIECGQLDK-AVELF-----------------------------------------KVAP 128
           Y + G+ DK A+ELF                                          +A 
Sbjct: 130 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 189

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V  V    ++IS Y + G+++ A K FD +  KNLV++NA++ GY +N  +E+   L   
Sbjct: 190 VNCV--GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 247

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           +   GI  +A + +S+L G + + ++  G+Q+H  + K     +      LISMY +CG+
Sbjct: 248 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 307

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +E A ++F E++ ++V++W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L A
Sbjct: 308 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 367

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H G++  G ++F+SM  ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      
Sbjct: 368 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 427

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++ TLL ACRVH   +L   AA  +    P + A  Y+ L+N++A+  +W DV +IR SM
Sbjct: 428 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSM 486

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           KE N++K  G SWIEV   VH F  G+  HP+   I+++L +L  ++K  GY+PD +F L
Sbjct: 487 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVL 546

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
           H + EE KEQ L  HSEK+A+AFGLI      PIR+FKNLRVCGDCH A KYIS    RE
Sbjct: 547 HDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 606

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I+VRD+ RFHH K+G CSC DYW
Sbjct: 607 IVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 157/318 (49%), Gaps = 17/318 (5%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIE 113
           A+  F ++P ++  +W  MI+ F Q      A DLFL M     V    ++S+++S   E
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKF---GKVDLAEKLFDEMPTKNLVTW 166
            G L    +L     ++     V    +++  Y K    G VD + K+F++MP  N+++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 167 NAMIAGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            A+I  Y ++   + + ++L   MI   IRPN  S SSVL  C +LS    G+QV+    
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K  +         LISMY + G +EDA K F  +  K++V++NA++ GYA++ K E+A  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVD 343
           LF+++ D G+   + TF +LL      G +  G Q    ++       K +   C  ++ 
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG---GYKSNQCICNALIS 300

Query: 344 LLGRAGKLVEAVDLIKKM 361
           +  R G +  A  +  +M
Sbjct: 301 MYSRCGNIEAAFQVFNEM 318


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/535 (42%), Positives = 317/535 (59%), Gaps = 9/535 (1%)

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN---- 100
           L C+      +  A   F  +P K+  SW  +ISG++      +A D+F  + E N    
Sbjct: 153 LVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPD 212

Query: 101 SVSWSAMISGYIECGQLDKAVELFK----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
           S +   ++S   + G L+    + K    +  V++V   T+++  Y K G ++ A  +FD
Sbjct: 213 SFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFD 272

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            MP K++V+W AMI GY  N   ++ + L   M    ++P+  ++  VL  C+ L +L+L
Sbjct: 273 GMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALEL 332

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+ V  LV ++    +    T LI +Y KCG +  A ++F  ++ KD V WNA+ISG A 
Sbjct: 333 GEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAM 392

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           +G  + +  LF +++  G+KPD  TF+ LL  C HAGLVD G +YF+SM   + +    +
Sbjct: 393 NGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIE 452

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY CMVDLLGRAG L EA  LI+ MP +    ++G LL ACR+H+   LAE A   L  L
Sbjct: 453 HYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIEL 512

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P N +G YV L+NIY+A  KWD+ A++RLSM E  + K PG SWIEV  +VHEF  GD+
Sbjct: 513 EPWN-SGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDK 571

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
            HP    I+ KL EL K+MK+AGYVP  +F L  + EE KE  L  HSEKLAIAFGLI  
Sbjct: 572 YHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISA 631

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
                IRV KNLRVCGDCH A K IS+I  REI VRD  RFH F++G+CSC DYW
Sbjct: 632 TPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 172/334 (51%), Gaps = 12/334 (3%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++L C    SD     F  F ++   +   WNTMI G V       A + +  M  +  
Sbjct: 50  NMILRCSFDFSDTNYTRF-LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF 108

Query: 100 --NSVSWSAMISGYIECGQLDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAE 152
             N+ ++  ++        L   V++  +  VK      V   T+++  Y K G ++ A 
Sbjct: 109 LPNNFTFPFVLKACARLLDLQLGVKIHTLV-VKGGFDCDVFVKTSLVCLYAKCGYLEDAH 167

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           K+FD++P KN+V+W A+I+GY+      + + + R ++ + + P++ ++  VL  C+ L 
Sbjct: 168 KVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLG 227

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
            L  G+ +H+ + +  + ++    T L+ MY KCG++E A  +F  +  KD+V+W AMI 
Sbjct: 228 DLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 287

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           GYA +G  ++A+ LF +M+ E +KPD  T V +L AC   G ++LG ++   +V+     
Sbjct: 288 GYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFL 346

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             P   T ++DL  + G +  A ++ K M  K +
Sbjct: 347 YNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDR 380



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 138/343 (40%), Gaps = 93/343 (27%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--------------- 65
           G L+DA ++FD IP  +VVS+  ++S   +       A D F+RL               
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISG-YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRV 219

Query: 66  ------------------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
                                    +++     +++  + +  NM KAR +F  MPEK+ 
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279

Query: 102 VSWSAMISGYIECGQLDKAVELF-------------KVAPVKSVVA---------W---- 135
           VSW AMI GY   G   +A++LF              V  V S  A         W    
Sbjct: 280 VSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGL 339

Query: 136 -------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                        TA+I  Y K G +  A ++F  M  K+ V WNA+I+G   N + +  
Sbjct: 340 VDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKIS 399

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
             L   +  LGI+P+ ++   +L GC+H   +  G++    +++        +LTP I  
Sbjct: 400 FGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR------FFSLTPSIEH 453

Query: 243 Y-C------KCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQH 277
           Y C      + G L++A +L   +    + + W A++     H
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIH 496



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 33/239 (13%)

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           LC D   L  ++       D      LF +I++ ++  WN MI G   +   + A+  + 
Sbjct: 42  LCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYG 101

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQY--------FD-------SMVNDYGIAA 333
            M+ EG  P++ TF  +L AC     + LG++         FD       S+V  Y    
Sbjct: 102 LMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCG 161

Query: 334 K-----------PD----HYTCMVDLLGRAGKLVEAVDLIKK---MPFKPQPAIFGTLLS 375
                       PD     +T ++      GK  EA+D+ ++   M   P       +LS
Sbjct: 162 YLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS 221

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           AC     L+  E+    +  +           L ++YA     +    +   M E ++V
Sbjct: 222 ACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIV 280


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/557 (39%), Positives = 320/557 (57%), Gaps = 40/557 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D   A   F+R+P ++  SWN +I G+V+  ++  AR LF  MP +N  +W+AM++G   
Sbjct: 92  DFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTN 151

Query: 114 CGQLDKAVELF--------------------------KVAPVKSVVAW------------ 135
            G  ++++  F                           V   + V A+            
Sbjct: 152 SGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCV 211

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ G +   E     +P+ N+V+ N  I+G  +N  AE  L+   +M G G+
Sbjct: 212 GSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGV 271

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             NA +  S +  CS L++L  G+Q+H L  K+ + K    +T L+ MY +CG L D+ +
Sbjct: 272 EANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSER 331

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           + LE    D+V  +AMIS Y  HG G+KA+ LF +M   G +P+ +TF+ LL AC+H+GL
Sbjct: 332 VCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGL 391

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            D G+  F+ M   YG+     HYTC+VDLLGR+G L EA DLI  MP +P   I+ TLL
Sbjct: 392 KDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLL 451

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SAC+  K+ D+AE  A  +  L+P ++A  YV L+NI A   +W+DV+++R +M+E NV 
Sbjct: 452 SACKTQKKFDMAERIAERVIELDPHDSAS-YVLLSNIRATSSRWEDVSKVRETMREQNVR 510

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SW+E+   +H+F +GD  H     I E L+E+  R++  GY PD+    H + +E
Sbjct: 511 KEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDE 570

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  REI+VRD 
Sbjct: 571 EKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDV 630

Query: 555 TRFHHFKDGTCSCGDYW 571
           +RFHHFKDG CSCGDYW
Sbjct: 631 SRFHHFKDGKCSCGDYW 647



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 27/166 (16%)

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           + E  W+E GL                  S +   C    +L L +Q+H     S    D
Sbjct: 37  FREGLWSEPGL-----------------FSHIFRACQ---ALPLLRQLHAFAATSGAAAD 76

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 L+  Y   GD   A  LF  I +++V++WN +I GY ++G  E A +LFD+M  
Sbjct: 77  RFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPA 136

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             +     T+ A++    ++GL +  + +F +M  +     +PD Y
Sbjct: 137 RNVA----TWNAMVAGLTNSGLNEESLGFFFAMRRE---GMQPDEY 175


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 328/520 (63%), Gaps = 10/520 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ 116
            F+ +  +D  +WN +I+ +VQ +N  +A  LF  + +     N +++  M++ Y     
Sbjct: 263 LFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTS 322

Query: 117 LDKAV---ELFKVAPV-KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           L K     EL K A   +  V  TA++S Y +      A K+F +M +K+++TW  M   
Sbjct: 323 LAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 382

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N + ++ L+L + M   G RP +++L +VL  C+HL++LQ G+Q+H  + ++    +
Sbjct: 383 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRME 442

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI+MY KCG + +A  +F ++ ++D++ WN+M+  YAQHG  ++ L+LF++M+ 
Sbjct: 443 MVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQL 502

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G+K D+++FV++L A +H+G V  G QYF +M+ D+ I   P+ Y C+VDLLGRAG++ 
Sbjct: 503 DGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQ 562

Query: 353 EAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           EAVD++ K+    P   ++ TLL ACR H + D A+ AA  +   +P+++ G YV L+N+
Sbjct: 563 EAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHS-GAYVVLSNV 621

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YAA   WD V R+R  M+   V K PG S IE+   VHEF  GDR HP    I+ +L  L
Sbjct: 622 YAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVL 681

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
              M+ AGY+PD +  LH V +E KE +L +HSE+LAIAFGLI  P GTP+RV KNLRVC
Sbjct: 682 NSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVC 741

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH ATKYIS +  REI+VRDT RFH+FKDG CSC DYW
Sbjct: 742 SDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 199/406 (49%), Gaps = 26/406 (6%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFD 60
           T V + ++L   A     LKD  E+  +I Q      ++ +   L+N       V  A+D
Sbjct: 104 TKVTYVAILNACASTE-SLKDGMEIHGQILQQGFEG-DVFVGTALINMYNKCGSVRGAWD 161

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
            F+RL  +D  SW  MI+  VQ    A AR L+  M       N ++   + + Y +   
Sbjct: 162 SFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNY 221

Query: 117 LDKAVELFKVAPVKSVVAWT---AMISGYMKFGKVDL---AEKLFDEMPTKNLVTWNAMI 170
           L +    F    V S V  +    M S    FG   L   A +LF++M  +++VTWN +I
Sbjct: 222 LSEGK--FVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVI 279

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
             YV+N    + ++L   +   G++ N  +   +L   + L+SL  GK +H+LV ++   
Sbjct: 280 TLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYD 339

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    T L+S+Y +C     A K+F+++  KDV+TW  M   YAQ+G  ++AL+LF +M
Sbjct: 340 RDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEM 399

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTCMVDLLGRAG 349
           + EG +P S T VA+L  C H   +  G Q    ++ N + +    +  T ++++ G+ G
Sbjct: 400 QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCG 457

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           K+ EA+ + +KM  K    ++ ++L A   H   D      + LFN
Sbjct: 458 KMAEAMSVFEKMA-KRDILVWNSMLGAYAQHGYYD----ETLQLFN 498



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISG 110
           V  A   F+ L  KD  +W  MI  + Q+ +  +A  +F  M E++     V++ A+++ 
Sbjct: 55  VPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNA 114

Query: 111 YIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                 L   +E    + +      V   TA+I+ Y K G V  A   F  +  +++V+W
Sbjct: 115 CASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSW 174

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            AMIA  V++        L R M   G+ PN  +L +V       + L  GK V+ LV  
Sbjct: 175 TAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSS 234

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             +  D   +   ++M+   G L DA +LF ++  +DVVTWN +I+ Y Q+    +A+RL
Sbjct: 235 GVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRL 294

Query: 287 FDKMKDEGMKPDSITFVALL 306
           F +++ +G+K + ITFV +L
Sbjct: 295 FGRLQQDGVKANDITFVLML 314



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 36/297 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELF 124
           DTA +  ++      KN+   R +   +     E+N++    +I  Y +CG + +A ++F
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           ++   K V AWT MI  Y + G  D A  +F +M  ++++                    
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVM-------------------- 102

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
                      P   +  ++L  C+   SL+ G ++H  + +     D    T LI+MY 
Sbjct: 103 -----------PTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYN 151

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG +  A   F  ++ +DVV+W AMI+   QH +   A  L+ +M+ +G+ P+ IT   
Sbjct: 152 KCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 211

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +  A      +  G ++   +V+   + +        V++ G AG L +A  L + M
Sbjct: 212 VFNAYGDPNYLSEG-KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM 267


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/640 (37%), Positives = 343/640 (53%), Gaps = 82/640 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRL---- 65
           S +  F  + GK+ +AQ +FD +P  DVV +N I+   +     DV  AF  F  +    
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDV--AFQLFFEMHGSG 226

Query: 66  ----PI-------------------------------KDTASWNTMISGFVQKKNMAKAR 90
               PI                                D     + +  + +  ++  AR
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-----------------------KVA 127
            +F  MP +N VSW+AMISG +  G + ++ +LF                       + A
Sbjct: 287 WVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTA 346

Query: 128 PVKS---------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            + +               ++  TA++  Y K G +  A  +F+ M  +N++TW AM+ G
Sbjct: 347 SLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVG 406

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
             +N  AED L+L   M   GI  N+ +  S++  C+HL SL+ G+ +H  +F+     D
Sbjct: 407 LAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFD 466

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
              +T L+ MY KCG +  A ++F      KDVV WN+MI+GY  HG G +A+ ++ KM 
Sbjct: 467 IVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMI 526

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           +EG+KP+  TF++LL AC+H+ LV+ GI  F+SM  D+ I     HY C+VDLL RAG+ 
Sbjct: 527 EEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRF 586

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA  LI+KMPF+P  A+   LLS CR HK ++L    +  L  L+  N  G Y+ L+NI
Sbjct: 587 EEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMN-PGIYIMLSNI 645

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA  ++WD V  IR  M+   + K PGYS +E G  VH F +GD  HP    I+  L+ L
Sbjct: 646 YAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESL 705

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
              ++ +GYVPD    L  V EE+K ++L  HSE+LAIAFGL+  P G+ IR+ KNLRVC
Sbjct: 706 RSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVC 765

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH  TKYIS I KREIIVRD  RFHHF +G CSCGDYW
Sbjct: 766 GDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 10/296 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPV 129
           N M+ G++Q     +  +LF  M  +N    S S +  +         +  +E+   A  
Sbjct: 99  NAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVE 158

Query: 130 KSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
           K +       ++MIS  +KFGK+  A+++FD MP K++V WN++I GYV+    +   +L
Sbjct: 159 KGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQL 218

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M G GI+P+  +++S++  C  + +L+LGK +H  V    L  D   LT  + MY K
Sbjct: 219 FFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSK 278

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            GD+E A  +F ++  +++V+WNAMISG  ++G   ++  LF ++       D  T V+L
Sbjct: 279 MGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSL 338

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           L  C+    +  G       +  +   +     T +VDL  + G L +A  +  +M
Sbjct: 339 LQGCSQTASLATGKILHGCAIRSF--ESNLILSTAIVDLYSKCGSLKQATFVFNRM 392



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 2/242 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y     ++ A  +FD+      +  NAM+ GY+++    + L+L  +M    + 
Sbjct: 68  TKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLE 127

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            ++ S +  L  C+     ++G ++     +  + K+    + +IS   K G + +A ++
Sbjct: 128 VDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRV 187

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  KDVV WN++I GY Q G  + A +LF +M   G+KP  IT  +L+ AC   G +
Sbjct: 188 FDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNL 247

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
            LG +     V   G+       T  VD+  + G +  A  +  KMP +   + +  ++S
Sbjct: 248 KLG-KCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVS-WNAMIS 305

Query: 376 AC 377
            C
Sbjct: 306 GC 307



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K  H  +  + L  D    T L+  Y     LE A  +F +  +   +  NAM+ GY Q 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G+  + L LF  M+   ++ DS +    L AC  +   ++G++   S V + G+      
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAV-EKGMEKNRFV 167

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            + M+  L + GK+ EA  +   MP K
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGMPNK 194


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/559 (41%), Positives = 333/559 (59%), Gaps = 10/559 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+ +FD++   +VV  N M++  LL    V  A   F+ +  +D+ +W TM++G 
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITG-LLRCKMVAEARALFEAIEERDSITWTTMVTGL 252

Query: 81  VQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVE-------LFKVAPVKSV 132
            Q    ++A D+F  M  E   +      S    CG L    E       + +     +V
Sbjct: 253 TQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNV 312

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              +A++  Y K   V LAE +F  M  KN+++W AMI GY +N   E+ +++   M   
Sbjct: 313 FVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRD 372

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI+P+  +L SV+  C++L+SL+ G Q H L   S L    T    L+++Y KCG +EDA
Sbjct: 373 GIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDA 432

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +LF E+   D V+W A++ GYAQ GK ++ + LF+KM  +G+KPD +TF+ +L AC+ +
Sbjct: 433 HRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRS 492

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD G  YF SM  D+ I    DHYTCM+DL  R+G L +A + IK+MP  P    + T
Sbjct: 493 GLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWAT 552

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSACR+   +++ ++AA NL  L+P N A  YV L +++A+  +W+DVA++R  M++  
Sbjct: 553 LLSACRLRGDMEIGKWAAENLLKLDPQNPAS-YVLLCSMHASKGEWNDVAKLRRGMRDRQ 611

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K PG SWI+    VH F + D+ HP   +I+EKL+ L  +M   GY PD+   LH V 
Sbjct: 612 VKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVA 671

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           +  K  +L  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH ATK+IS I  R+I+VR
Sbjct: 672 DAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVR 731

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFH F +G CSCGD+W
Sbjct: 732 DAVRFHKFSNGICSCGDFW 750



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 13/376 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V  NS+L+  A+  G ++D + LF  +PQ D VSYN +L+          AA  
Sbjct: 72  MPGRNLVTGNSLLSALARA-GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGA 130

Query: 61  FFQRL-------PIKDTASWNTMISGFVQKKNMAK---ARDLFLAMPEKNSVSWSAMISG 110
           +   L       P + T S   M++  +  + + +    + L L      + + S ++  
Sbjct: 131 YVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFG-AYAFTGSPLVDM 189

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G +  A  +F     K+VV    MI+G ++   V  A  LF+ +  ++ +TW  M+
Sbjct: 190 YAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMV 249

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            G  +N    + L + R M   G+  +  +  S+L  C  L++L+ GKQ+H  + ++   
Sbjct: 250 TGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE 309

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            +    + L+ MY KC  +  A  +F  +  K++++W AMI GY Q+G GE+A+R+F +M
Sbjct: 310 DNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEM 369

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           + +G+KPD  T  +++ +C +   ++ G Q F  +    G+         +V L G+ G 
Sbjct: 370 QRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGS 428

Query: 351 LVEAVDLIKKMPFKPQ 366
           + +A  L  +M F  Q
Sbjct: 429 IEDAHRLFDEMSFHDQ 444



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 37/251 (14%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + +++ Y   G L  A  +F   P +++V   +++S   + G V   E+LF  +P ++ V
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 165 TWNAMIAGYVENSWAEDG----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++NA++AG+             + LLR     G+RP+  ++S V++  S L    LG+QV
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEA--GVRPSRITMSGVVMVASALGDRALGRQV 167

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------------------CK-- 254
           H  + +          +PL+ MY K G + DA                        CK  
Sbjct: 168 HCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMV 227

Query: 255 -----LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
                LF  I+ +D +TW  M++G  Q+G   +AL +F +M+ EG+  D  TF ++L AC
Sbjct: 228 AEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTAC 287

Query: 310 NHAGLVDLGIQ 320
                ++ G Q
Sbjct: 288 GALAALEEGKQ 298


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/558 (41%), Positives = 332/558 (59%), Gaps = 8/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN---SDDVVAAFDFFQRLPIKDTASWNTMI 77
           G +  A+++FD+    ++V YN ++S  + +   SD +V   +  Q+ P  D  +  + I
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTI 339

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +   Q  +++  +     +       W    +A+I  Y++CG+ + A ++F+  P K+VV
Sbjct: 340 AACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVV 399

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            W ++I+G ++ G ++LA ++FDEM  ++LV+WN MI   V+ S  E+ ++L R M   G
Sbjct: 400 TWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG 459

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I  +  ++  +   C +L +L L K V   + K+ +  D    T L+ M+ +CGD   A 
Sbjct: 460 IPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAM 519

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  ++++DV  W A I   A  G  E A+ LF++M ++ +KPD + FVALL AC+H G
Sbjct: 520 HVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGG 579

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            VD G Q F SM   +GI     HY CMVDLLGRAG L EAVDLI+ MP +P   ++G+L
Sbjct: 580 SVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSL 639

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L+ACR HK ++LA +AA  L  L P    G +V L+NIYA+  KW DVAR+RL MKE  V
Sbjct: 640 LAACRKHKNVELAHYAAEKLTQLAPER-VGIHVLLSNIYASAGKWTDVARVRLQMKEKGV 698

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+PG S IEV  ++HEF SGD  H E   I   L+E+  R+  AGYVPD    L  V E
Sbjct: 699 QKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDE 758

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           + KE LL  HSEKLA+A+GLI    G PIRV KNLR+C DCH   K +S +  REI VRD
Sbjct: 759 QEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRD 818

Query: 554 TTRFHHFKDGTCSCGDYW 571
             R+H FK+G CSC DYW
Sbjct: 819 NNRYHFFKEGFCSCRDYW 836



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 160/344 (46%), Gaps = 48/344 (13%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ 116
            F  +  ++  SW ++I+G+  +    +A  LF  M E     N V+   +IS    C +
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISA---CAK 243

Query: 117 LDKAVELFK--------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           L K +EL K        +    S +   A++  YMK G +  A ++FDE   KNLV +N 
Sbjct: 244 L-KDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNT 302

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           +++ YV + WA D L +L  M+  G RP+  ++ S +  C+ L  L +GK  H  V ++ 
Sbjct: 303 IMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNG 362

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L         +I MY KCG  E ACK+F  +  K VVTWN++I+G  + G  E A R+FD
Sbjct: 363 LEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFD 422

Query: 289 -------------------------------KMKDEGMKPDSITFVALLLACNHAGLVDL 317
                                          +M+++G+  D +T V +  AC + G +DL
Sbjct: 423 EMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDL 482

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++  + +    I       T +VD+  R G    A+ + K+M
Sbjct: 483 A-KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRM 525



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 13/302 (4%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAM------PEKNS----VSWSAMISGYIECGQLDKAVE 122
           +N +I G+       +A  L++ M      P+K +    +S  + I    E  Q+  AV 
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV- 156

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
             K+     +    ++I  Y + GKVDL  KLFD M  +N+V+W ++I GY     +++ 
Sbjct: 157 -LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEA 215

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           + L   M   G+ PN  ++  V+  C+ L  L+LGK+V   + +  +   T  +  L+ M
Sbjct: 216 VSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDM 275

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCGD+  A ++F E   K++V +N ++S Y  H      L + D+M  +G +PD +T 
Sbjct: 276 YMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTM 335

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++ + AC   G + +G      ++ + G+    +    ++D+  + GK   A  + + MP
Sbjct: 336 LSTIAACAQLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCGKREAACKVFEHMP 394

Query: 363 FK 364
            K
Sbjct: 395 NK 396



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 148 VDLAEKLF--DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           +D A   F  D+    +L  +N +I GY      +  + L   M+ +GI P+  +   +L
Sbjct: 78  LDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLL 137

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             CS + +L  G QVH  V K  L  D      LI  Y +CG ++   KLF  +  ++VV
Sbjct: 138 SACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVV 197

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +W ++I+GY+     ++A+ LF +M + G++P+ +T V ++ AC     ++LG +   S 
Sbjct: 198 SWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELG-KKVCSY 256

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           +++ G+         +VD+  + G +  A  +  +   K    ++ T++S
Sbjct: 257 ISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANK-NLVMYNTIMS 305



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 47/317 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  KT V WNS++AG  +  G ++ A  +FD++ + D+VS+N M+   L+       A +
Sbjct: 393 MPNKTVVTWNSLIAGLVRD-GDMELAWRIFDEMLERDLVSWNTMIGA-LVQVSMFEEAIE 450

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVS-----WSAMISGYI 112
            F+ +  +        + G         A DL        EKN +       +A++  + 
Sbjct: 451 LFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFS 510

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            CG    A+ +FK    + V AWTA I      G  + A +LF+EM  +           
Sbjct: 511 RCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQK---------- 560

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK- 231
                                ++P+     ++L  CSH  S+  G+Q+   + K+   + 
Sbjct: 561 ---------------------VKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRP 599

Query: 232 DTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                  ++ +  + G LE+A  L   + I+  DVV W ++++   +H   E A    +K
Sbjct: 600 HIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVV-WGSLLAACRKHKNVELAHYAAEK 658

Query: 290 MKDEGMKPDSITFVALL 306
           +    + P+ +    LL
Sbjct: 659 LTQ--LAPERVGIHVLL 673


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/529 (42%), Positives = 328/529 (62%), Gaps = 19/529 (3%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKN------SVSWSAMISG 110
            F  +P ++  +W ++I+G+VQ  +  +A    ++      E N      SV   AMIS 
Sbjct: 139 LFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISV 198

Query: 111 YIECGQL-DKAVE------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
              C ++ +KAV         KV   K +     ++  Y K G+V L+ K+FD+M  K++
Sbjct: 199 LSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDV 258

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           V+WN+MIA Y +N  + D  ++   M+  G  + N  +LS++LL C+H  +L++G  +H 
Sbjct: 259 VSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHD 318

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            V K     +    T +I MYCKCG  E A   F  ++ K+V +W AMI+GY  HG   +
Sbjct: 319 QVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFARE 378

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL +F +M   G+KP+ ITF+++L AC+HAG ++ G ++F++M ++Y +    +HY CMV
Sbjct: 379 ALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMV 438

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DLLGRAG + EA +LIK M  +    ++G+LL+ACR+HK ++LAE +A  LF L+P+N  
Sbjct: 439 DLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNC- 497

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G YV LANIYA   +W DV R+R+ +K+  +VK PGYS +E+   VH F  GD+ HP+  
Sbjct: 498 GYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHE 557

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I++ L+EL  +++ AGYVP++   LH V EE KE ++  HSEKLA+AFG++    G+ I
Sbjct: 558 KIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTI 617

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            V KNLRVCGDCH   K IS I  REIIVRD  RFHHFKDG CSCGDYW
Sbjct: 618 HVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
           L  K FD     ++ +WN++IA       + + L+    M  L I+PN S+    +  CS
Sbjct: 37  LFNKYFDR---TDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCS 93

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L  L  GKQ HQ         D    + LI MY KCG L +A  LF EI R+++VTW +
Sbjct: 94  ALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTS 153

Query: 270 MISGYAQHGKGEKALRLFDKM---------KDEGMKPDSITFVALLLACN 310
           +I+GY Q+    +AL +F +          ++ G   DS+  +++L AC+
Sbjct: 154 LITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACS 203



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 19/137 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNS------- 52
           M  K  V+WNS++A +A Q G   DA E+F  + +     YN + LS +LL         
Sbjct: 253 MAEKDVVSWNSMIAVYA-QNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALR 311

Query: 53  -----DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
                 D V    +   + +       ++I  + +      AR+ F  M EKN  SW+AM
Sbjct: 312 VGMCLHDQVIKMGYVNNVIMA-----TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAM 366

Query: 108 ISGYIECGQLDKAVELF 124
           I+GY   G   +A+++F
Sbjct: 367 IAGYGMHGFAREALDVF 383


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/558 (41%), Positives = 325/558 (58%), Gaps = 41/558 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ +A   ++R+  K+  S N +I+G+V+  ++  AR +F  MP++   +W+AMI+G I+
Sbjct: 9   DLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQ 68

Query: 114 CGQLDKAVELFK--------------------VAPVKSV-------------------VA 134
               ++ + LF+                     A ++SV                   V 
Sbjct: 69  FEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVV 128

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ GK+   E +   MP +NLV WN +I G  +N   E  L L +MM   G 
Sbjct: 129 NSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGC 188

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG L DA K
Sbjct: 189 RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK 248

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAG 313
            F E + +D V W++MIS Y  HG+G++A++LF+ M ++  M+ + + F+ LL AC+H+G
Sbjct: 249 AFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSG 308

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +IK MP KP P I+ TL
Sbjct: 309 LKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTL 368

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R SM++ NV
Sbjct: 369 LSACNIHKNAEMAQKVFKEILEIDP-NDSACYVLLANVHASAKRWRDVSEVRKSMRDKNV 427

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD    LH + E
Sbjct: 428 KKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDE 487

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I  REI +RD
Sbjct: 488 EEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRD 547

Query: 554 TTRFHHFKDGTCSCGDYW 571
            +RFHHF +G CSCGDYW
Sbjct: 548 GSRFHHFINGKCSCGDYW 565



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 6/288 (2%)

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           +S Y + G L  AV L++    K+ ++   +I+GY++ G +  A K+FDEMP + L TWN
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AMIAG ++  + E+GL L R M GLG  P+  +L SV  G + L S+ +G+Q+H    K 
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  D    + L  MY + G L+D   +   +  +++V WN +I G AQ+G  E  L L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
             MK  G +P+ ITFV +L +C+   +   G Q     +   G ++     + ++ +  +
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYSK 239

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            G L +A     +   + +  ++ +++SA   H + D     A+ LFN
Sbjct: 240 CGCLGDAAKAFSEREDEDE-VMWSSMISAYGFHGQGD----EAIKLFN 282



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 52/317 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS LA    + GKL+D +                    I++ S            +P+++
Sbjct: 129 NSSLAHMYMRNGKLQDGE--------------------IVIRS------------MPVRN 156

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC---GQLDKA-V 121
             +WNT+I G  Q         L+  M       N +++  ++S   +    GQ  +   
Sbjct: 157 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 216

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E  K+     V   +++IS Y K G +  A K F E   ++ V W++MI+ Y  +   ++
Sbjct: 217 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 276

Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTAL 236
            +KL   M     +  N  +  ++L  CSH      G ++  ++ +     P  K  T +
Sbjct: 277 AIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 336

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+     C D  +A    + I + D V W  ++S    H   E A ++F ++ +  + 
Sbjct: 337 VDLLGR-AGCLDQAEAIIKSMPI-KPDPVIWKTLLSACNIHKNAEMAQKVFKEILE--ID 392

Query: 297 P-DSITFVALLLACNHA 312
           P DS  +V  LLA  HA
Sbjct: 393 PNDSACYV--LLANVHA 407


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/560 (40%), Positives = 328/560 (58%), Gaps = 8/560 (1%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNT 75
           + G L  A E+FDKIP PD   YN +    L   L  + +        +    +  ++  
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 76  MISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +I        + + + +   + +     +  S + +I  Y+    L++A  +F   P + 
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD 185

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VV+WT++I+GY ++G VD A ++F+ MP +N V+WNAMIA YV+++   +   L   M  
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +  +    +S+L  C+ L +L+ GK +H  + KS +  D+   T +I MYCKCG LE 
Sbjct: 246 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F E+ +K + +WN MI G A HGKGE A+ LF +M+ E + PD ITFV +L AC H
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 365

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +GLV+ G  YF  M    G+    +H+ CMVDLLGRAG L EA  LI +MP  P   + G
Sbjct: 366 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 425

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            L+ ACR+H   +L E     +  L P N+ G YV LAN+YA+  +W+DVA++R  M + 
Sbjct: 426 ALVGACRIHGNTELGEQIGKKVIELEPHNS-GRYVLLANLYASAGRWEDVAKVRKLMNDR 484

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            V K PG+S IE  + V EF +G R HP+   I+ KL E+ + ++  GYVPD +  LH +
Sbjct: 485 GVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDI 544

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE  L +HSEKLAIAFGL+K   G  +R+ KNLR+C DCH+A+K IS +  REII+
Sbjct: 545 DEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIII 604

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHF+ G CSC DYW
Sbjct: 605 RDRNRFHHFRMGGCSCKDYW 624



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 157/344 (45%), Gaps = 43/344 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W S++ G++ Q G +  A+E+F+ +P+ + VS+N M++   + S+ +  AF 
Sbjct: 181 MPQRDVVSWTSLITGYS-QWGFVDKAREVFELMPERNSVSWNAMIAA-YVQSNRLHEAFA 238

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+ ++     N ++  FV    ++    L        ++     I GYIE       
Sbjct: 239 LFDRMRLE-----NVVLDKFVAASMLSACTGL-------GALEQGKWIHGYIE----KSG 282

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           +EL       S +A T +I  Y K G ++ A ++F+E+P K + +WN MI G   +   E
Sbjct: 283 IEL------DSKLA-TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGE 335

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-- 238
             ++L + M    + P+  +  +VL  C+H   ++ GK   Q +       +   L P  
Sbjct: 336 AAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYM------TEVLGLKPGM 389

Query: 239 -----LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                ++ +  + G LE+A KL  E+    D     A++     HG  E   ++  K+ +
Sbjct: 390 EHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE 449

Query: 293 EGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
             ++P +S  +V L      AG  +  +     ++ND G+   P
Sbjct: 450 --LEPHNSGRYVLLANLYASAGRWE-DVAKVRKLMNDRGVKKAP 490


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/616 (39%), Positives = 351/616 (56%), Gaps = 47/616 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------- 53
           M  +   +WN++++G+  Q G  K+A  L D +   D V+   +LS      D       
Sbjct: 211 MPTRDMGSWNAMISGYC-QSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTI 269

Query: 54  --------------------DVVAAF-------DFFQRLPIKDTASWNTMISGFVQKKNM 86
                               D+ A F         F R+ ++D  SWN++I  +   +  
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329

Query: 87  AKARDLFLAM------PEKNS-VSWSAMIS--GYIECGQLDKAVELFKVAPVKSVVAWTA 137
            +A  LF  M      P+  + +S ++++S  G I   +  +   L K   ++ +    A
Sbjct: 330 LRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNA 389

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IR 195
           ++  Y K G VD A  +F+ +P K++++WN +I+GY +N +A + +++  +M   G  I 
Sbjct: 390 VVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEIS 449

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            N  +  SVL  CS   +L+ G ++H  + K+ L  D    T L  MY KCG L+DA  L
Sbjct: 450 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSL 509

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F +I R + V WN +I+ +  HG GEKA+ LF +M DEG+KPD ITFV LL AC+H+GLV
Sbjct: 510 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 569

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           D G   F+ M  DYGI     HY CMVDL GRAG+L  A++ IK MP +P  +I+G LLS
Sbjct: 570 DEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLS 629

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACRVH  +DL + A+ +LF + P +  G +V L+N+YA+  KW+ V  IR       + K
Sbjct: 630 ACRVHGNVDLGKIASEHLFEVEPEH-VGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRK 688

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG+S +EV   V  F +G++ HP    ++ +L  L +++K+ GYVPD  F L  V ++ 
Sbjct: 689 TPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDE 748

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE +L+ HSE+LA+AF LI  P  T IR+FKNLRVCGDCH  TK+IS I +REIIVRD+ 
Sbjct: 749 KEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSN 808

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHFK+G CSCGDYW
Sbjct: 809 RFHHFKNGVCSCGDYW 824



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 184/399 (46%), Gaps = 46/399 (11%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           VV A   F  +P +D  SWN MISG+ Q  N  +A  L   +   +SV+  +++S   E 
Sbjct: 201 VVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEA 260

Query: 115 GQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           G  ++ V +     K      +     +I  Y +FG +   +K+FD M  ++L++WN++I
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSII 320

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-KSPL 229
             Y  N      + L + M    I+P+  +L S+    S L  ++  + V      K   
Sbjct: 321 KAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWF 380

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            +D T    ++ MY K G ++ A  +F  +  KDV++WN +ISGYAQ+G   +A+ +++ 
Sbjct: 381 LEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNI 440

Query: 290 MKDEG--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           M++EG  +  +  T+V++L AC+ AG +  G++    ++ + G+       T + D+ G+
Sbjct: 441 MEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGK 499

Query: 348 AGKLVEAVDLIKKMP----------------------------------FKPQPAIFGTL 373
            G+L +A+ L  ++P                                   KP    F TL
Sbjct: 500 CGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 559

Query: 374 LSACRVHKRLDLAE--FAAMNL-FNLNPA-NAAGCYVQL 408
           LSAC     +D  E  F  M   + + P+    GC V L
Sbjct: 560 LSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDL 598



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           +++V     +++ Y   G V LA   FD +  +++  WN MI+GY    ++ + ++   +
Sbjct: 83  IQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSL 142

Query: 189 -MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+  G++P+  +  SVL  C +++    G ++H L  K     D      LI +YC+ G
Sbjct: 143 FMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYG 199

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            + +A  LF E+  +D+ +WNAMISGY Q G  ++AL L D ++      DS+T V+LL 
Sbjct: 200 AVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLS 255

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           AC  AG  + G+    S    +G+ ++      ++DL    G L +   +  +M
Sbjct: 256 ACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 121/261 (46%), Gaps = 47/261 (18%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS------------- 131
           N+A AR  F  +  ++  +W+ MISGY   G   + +  F +  + S             
Sbjct: 101 NVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVL 160

Query: 132 ------------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
                                   V    ++I  Y ++G V  A  LFDEMPT+++ +WN
Sbjct: 161 KACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWN 220

Query: 168 AMIAGYVENSWAEDGLKL---LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           AMI+GY ++  A++ L L   LR M       ++ ++ S+L  C+       G  +H   
Sbjct: 221 AMISGYCQSGNAKEALTLSDGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K  L  +      LI +Y + G L+D  K+F  +  +D+++WN++I  Y  + +  +A+
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 285 RLFDKMKDEGMKPDSITFVAL 305
            LF +M+   ++PD +T ++L
Sbjct: 334 LLFQEMRLSRIQPDCLTLISL 354



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 21/164 (12%)

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
           + ++LQ  K +H  +  S   ++      L+++YC  G++  A   F  I  +DV  WN 
Sbjct: 63  YCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNL 122

Query: 270 MISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLACN--------HAGLVDLGIQ 320
           MISGY + G   + +R F   M   G++PD  TF ++L AC         H   +  G  
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFM 182

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +      D  +AA   H  C      R G +V A  L  +MP +
Sbjct: 183 W------DVYVAASLIHLYC------RYGAVVNARILFDEMPTR 214


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/551 (40%), Positives = 324/551 (58%), Gaps = 42/551 (7%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F R P +D  S+  +I G+  +  +  A+ LF  +P K+ VSW+AMISGY E G   +A+
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 122 ELFK------VAPVKS--------------------VVAW-------------TAMISGY 142
           ELFK      + P +S                    V +W              +++  Y
Sbjct: 252 ELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLY 311

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G+++ A  LF+ +  K++++WN +I GY   +  ++ L L + M+  G RPN  ++ 
Sbjct: 312 SKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTML 371

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           S+L  C+HL ++ +G+ +H  + K        ++  T LI MY KCGD+E A ++F  I 
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K + +WNAMI G+A HG+ + A  +F +M+  G++PD ITFV LL AC+ +G++DLG  
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRH 491

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
            F +M  DY I  K +HY CM+DLLG +G   EA ++I  M  +P   I+ +LL AC++ 
Sbjct: 492 IFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIR 551

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
             ++L E  A NL  + P N  GCYV L+NIYA   +W++VA+IR  + +  + K+PG S
Sbjct: 552 GNVELGESFAQNLIKIEPENP-GCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCS 610

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
            IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD    L  + EE KE  L
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGAL 670

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS I KREII RD TRFHHF
Sbjct: 671 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 730

Query: 561 KDGTCSCGDYW 571
           +DG CSC DYW
Sbjct: 731 RDGVCSCNDYW 741



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   NL+ WN M  G+  +S     LKL   MI LG+ PN+ +   +
Sbjct: 81  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFL 140

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------------- 251
           L  C+   + + G+Q+H  V K     D    T LIS+Y + G LED             
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDV 200

Query: 252 ------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                             A KLF EI  KDVV+WNAMISGYA+ G  ++AL LF +M   
Sbjct: 201 VSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT 260

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V ++ AC  +G ++LG Q   S ++D+G  +       ++DL  + G+L  
Sbjct: 261 NIRPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGELET 319

Query: 354 AVDLIKKMPFK 364
           A  L + + +K
Sbjct: 320 ACGLFEGLLYK 330



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 165/403 (40%), Gaps = 84/403 (20%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCI---------- 48
           VK  V+WN++++G+A + G  K+A ELF ++     +PD  +   ++S            
Sbjct: 228 VKDVVSWNAMISGYA-ETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGR 286

Query: 49  ----------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                           ++NS         ++  A   F+ L  KD  SWNT+I G+    
Sbjct: 287 QVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMN 346

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
              +A  LF  M       N V+  +++      G +D  + + ++    +KS       
Sbjct: 347 LYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSL 406

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A ++F+ +  K+L +WNAMI G+  +  A+    +   M  +GI
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGI 466

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CS    L LG+ + + + +         +TP +  Y           
Sbjct: 467 EPDDITFVGLLSACSRSGMLDLGRHIFRTMTQD------YKITPKLEHY----------- 509

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                          MI      G  ++A  + + M+   M+PD + + +LL AC   G 
Sbjct: 510 -------------GCMIDLLGHSGLFKEAEEMINNME---MEPDGVIWCSLLKACKIRGN 553

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           V+LG  +  +++        P  Y  + ++   AG+  E   +
Sbjct: 554 VELGESFAQNLIKIE--PENPGCYVLLSNIYATAGRWNEVAKI 594


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/527 (43%), Positives = 322/527 (61%), Gaps = 13/527 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIE 113
           V AA   F  +P++++ SWN MI G+    N  +A  LF  M ++   V+ +++++    
Sbjct: 170 VEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQA 229

Query: 114 CGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL-VT 165
           CG+L    E       L +V    +V    A+I+ Y K  + DLA ++F+E+  K   ++
Sbjct: 230 CGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNAMI G+ +N   ED  +L   M    +RP++ +L SV+   + +S     + +H    
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSI 349

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +  L +D   LT LI MY KCG +  A +LF   + + V+TWNAMI GY  HG G+ A+ 
Sbjct: 350 RHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVE 409

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF++MK  G  P+  TF+++L AC+HAGLVD G +YF SM  DYG+    +HY  MVDLL
Sbjct: 410 LFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLL 469

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GRAGKL EA   IK MP +P  +++G +L AC++HK ++LAE +A  +F L P    G Y
Sbjct: 470 GRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEE--GVY 527

Query: 406 -VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
            V LANIYA    W DVAR+R +M++  + K PG+S I++   VH F SG   H     I
Sbjct: 528 HVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDI 587

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           + +L +L + +K  GYVPD + ++H V ++VK QLL  HSEKLAIA+GLI+   GT I++
Sbjct: 588 YARLAKLIEEIKDMGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQI 646

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH ATK IS +  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 647 KKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 152/305 (49%), Gaps = 20/305 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
           F R+P +D  +WN +++G+ +    + A +  + M         +SV+  +++    +  
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 116 QLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            L    E+   A        V   TA++  Y K G V+ A  +FD MP +N V+WNAMI 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +N  A + + L   M+  G+    +S+ + L  C  L  L   ++VH+L+ +  L  
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           + +    LI+ Y KC   + A ++F E+  +K  ++WNAMI G+ Q+   E A RLF +M
Sbjct: 254 NVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM 313

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLG 346
           + E ++PDS T V+++ A     + D+        ++ Y I  + D      T ++D+  
Sbjct: 314 QLENVRPDSFTLVSVIPA-----VADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYS 368

Query: 347 RAGKL 351
           + G++
Sbjct: 369 KCGRV 373



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 2/186 (1%)

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           +A TA+ + Y K  +   A ++FD MP+++ V WNA++AGY  N      ++ +  M G 
Sbjct: 52  IASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGE 111

Query: 193 --GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G RP++ +L SVL  C+   +L   ++VH    ++ L +     T ++  YCKCG +E
Sbjct: 112 EGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVE 171

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A  +F  +  ++ V+WNAMI GYA +G   +A+ LF +M  EG+     + +A L AC 
Sbjct: 172 AARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACG 231

Query: 311 HAGLVD 316
             G +D
Sbjct: 232 ELGYLD 237



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 48/266 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIML---SCILLNS-DD 54
           M V+ +V+WN+++ G+A   G   +A  LF ++ Q   DV   +++    +C  L   D+
Sbjct: 180 MPVRNSVSWNAMIDGYADN-GNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238

Query: 55  VVAAFDFFQRLPIKDTAS-WNTMISGFVQKKNMAKARDLFLAMPEKNS-VSWSAMISGYI 112
           V    +   R+ +    S  N +I+ + + K    A  +F  +  K + +SW+AMI G+ 
Sbjct: 239 VRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFT 298

Query: 113 ECGQLDKAVELF----------------KVAPV-----------------------KSVV 133
           +    + A  LF                 V P                        + V 
Sbjct: 299 QNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVY 358

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             TA+I  Y K G+V +A +LFD    ++++TWNAMI GY  + + +  ++L   M G G
Sbjct: 359 VLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTG 418

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQ 219
             PN ++  SVL  CSH   +  G++
Sbjct: 419 SLPNETTFLSVLAACSHAGLVDEGQK 444



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   + +++L  C+  + L  G+ VH  +    L  ++ A T L +MY KC    DA ++
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKPDSITFVALLLACNHA 312
           F  +  +D V WNA+++GYA++G    A+    +M+ E  G +PDS+T V++L AC  A
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 146/337 (43%), Gaps = 51/337 (15%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVA 57
           N KT ++WN+++ GF +     +DA+ LF ++     +PD  +   ++  +   SD + A
Sbjct: 283 NKKTRISWNAMILGFTQNECP-EDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQA 341

Query: 58  ----AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                +    +L  +D      +I  + +   ++ AR LF +  +++ ++W+AMI GY  
Sbjct: 342 RWIHGYSIRHQLD-QDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGS 400

Query: 114 CGQLDKAVELFK----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NLV 164
            G    AVELF+       + +   + ++++     G VD  +K F  M         + 
Sbjct: 401 HGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGME 460

Query: 165 TWNAMI-----AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +  M+     AG ++ +W+         +  + I P  S   ++L  C    +++L ++
Sbjct: 461 HYGTMVDLLGRAGKLDEAWS--------FIKNMPIEPGISVYGAMLGACKLHKNVELAEE 512

Query: 220 VHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT---W-------- 267
             Q++F+  P  ++      L ++Y      +D  ++   +++K +     W        
Sbjct: 513 SAQIIFELGP--EEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNE 570

Query: 268 -NAMISGYAQHGKGE----KALRLFDKMKDEGMKPDS 299
            +   SG   H   +    +  +L +++KD G  PD+
Sbjct: 571 VHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDT 607


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/555 (41%), Positives = 325/555 (58%), Gaps = 42/555 (7%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F R   +D  S+  +++G+  +  +  AR++F  +P K+ VSW+AMISGY+E G  
Sbjct: 117 AHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNY 176

Query: 118 DKAVELFK------VAPVKS--------------------VVAW-------------TAM 138
            +A+ELFK      V P +S                    V +W              A+
Sbjct: 177 KEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNAL 236

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I  Y K G+++ A  LF  +  K++++WN +I GY   +  ++ L L + M+  G  PN 
Sbjct: 237 IDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPND 296

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            ++ S+L  C+HL ++ +G+ +H  + K    +   ++  T LI MY KCGD+E A ++F
Sbjct: 297 VTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVF 356

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  K +  WNAMI G+A HG+   A  +F +M+   +KPD ITFV LL AC+HAG++D
Sbjct: 357 NSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLD 416

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           LG   F SM ++Y I  K +HY CM+DLLG +G   EA ++I  M  +P   I+ +LL A
Sbjct: 417 LGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKA 476

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           C++H  ++L E  A NLF + P N  G YV L+NIYA   +W++VARIR  + +  + K+
Sbjct: 477 CKMHGNVELGEKFAQNLFKIEPNNP-GSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKV 535

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD    L  + EE K
Sbjct: 536 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFK 595

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E  L  HSEKLAIAFGLI     T + + KNLRVC +CH ATK IS I KREII RD TR
Sbjct: 596 EGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 655

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF+DG CSC DYW
Sbjct: 656 FHHFRDGVCSCNDYW 670



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 192/374 (51%), Gaps = 38/374 (10%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-----------------AFDFFQRL 65
           L  A  +F+ I +P+++ +N M     L+ D V A                  F F  + 
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 66  PIKDTASWNTM-ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
             K  AS   + I G V K  +    DL++          +++IS Y++  +L+ A ++F
Sbjct: 73  CAKLKASKEGLQIHGHVLK--LGYELDLYVH---------TSLISMYVQNERLEDAHKVF 121

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
             +  + VV++TA+++GY   G ++ A  +FDE+P K++V+WNAMI+GYVE    ++ L+
Sbjct: 122 DRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALE 181

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L + M+   +RP+ S++ +V+   +   S++LG+QVH  +       +   +  LI  Y 
Sbjct: 182 LFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYS 241

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG++E AC LFL +  KDV++WN +I GY      ++AL LF +M   G  P+ +T ++
Sbjct: 242 KCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLS 301

Query: 305 LLLACNHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +L AC H G +D+G     Y D  +   G+       T ++D+  + G +  A  +   M
Sbjct: 302 ILHACAHLGAIDIGRWIHVYIDKRLK--GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM 359

Query: 362 PFKPQPA----IFG 371
             K  PA    IFG
Sbjct: 360 LHKSLPAWNAMIFG 373



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 115/251 (45%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   NL+ WN M  G+  +      LKL   MI LG+ PN+ +   +
Sbjct: 10  FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFL 69

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---------- 254
           L  C+ L + + G Q+H  V K     D    T LISMY +   LEDA K          
Sbjct: 70  LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129

Query: 255 ---------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                                +F EI  KDVV+WNAMISGY + G  ++AL LF +M   
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V ++ A   +G ++LG Q   S + D+G  +       ++D   + G++  
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQ-VHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 354 AVDLIKKMPFK 364
           A  L   + +K
Sbjct: 249 ACGLFLGLSYK 259


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/615 (39%), Positives = 350/615 (56%), Gaps = 46/615 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------- 53
           M V+   +WN++++G+  Q G  K+A  L + +   D V+   +LS      D       
Sbjct: 211 MPVRDMGSWNAMISGYC-QSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTI 269

Query: 54  --------------------DVVAAF-------DFFQRLPIKDTASWNTMISGFVQKKNM 86
                               D+ A F         F R+ ++D  SWN++I  +   +  
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329

Query: 87  AKARDLFLAM------PEKNS-VSWSAMIS--GYIECGQLDKAVELFKVAPVKSVVAWTA 137
            +A  LF  M      P+  + +S ++++S  G I   +  +   L K   ++ +    A
Sbjct: 330 LRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNA 389

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRP 196
           ++  Y K G VD A  +F+ +P  ++++WN +I+GY +N +A + +++  +M   G I  
Sbjct: 390 VVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAA 449

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  +  SVL  CS   +L+ G ++H  + K+ L  D   +T L  MY KCG LEDA  LF
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            +I R + V WN +I+ +  HG GEKA+ LF +M DEG+KPD ITFV LL AC+H+GLVD
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G   F+ M  DYGI     HY CMVD+ GRAG+L  A+  IK M  +P  +I+G LLSA
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 629

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CRVH  +DL + A+ +LF + P +  G +V L+N+YA+  KW+ V  IR       + K 
Sbjct: 630 CRVHGNVDLGKIASEHLFEVEPEH-VGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG+S +EV   V  F +G++ HP    ++ +L  L+ ++K+ GYVPD  F L  V ++ K
Sbjct: 689 PGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEK 748

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E +L+ HSE+LAIAF LI  P  T IR+FKNLRVCGDCH  TK+IS I +REIIVRD+ R
Sbjct: 749 EHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 808

Query: 557 FHHFKDGTCSCGDYW 571
           FHHFK+G CSCGDYW
Sbjct: 809 FHHFKNGVCSCGDYW 823



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D  SWN MISG+ Q  N  +A  L   +   +SV+  +++S   E G  ++ 
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG 266

Query: 121 VEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           V +     K      +     +I  Y +FG++   +K+FD M  ++L++WN++I  Y  N
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-KSPLCKDTTA 235
                 + L + M    I+P+  +L S+    S L  ++  + V      K    +D T 
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI 386

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG- 294
              ++ MY K G ++ A  +F  +   DV++WN +ISGYAQ+G   +A+ +++ M++EG 
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGE 446

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +  +  T+V++L AC+ AG +  G++    ++ + G+       T + D+ G+ G+L +A
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDA 505

Query: 355 VDLIKKMP 362
           + L  ++P
Sbjct: 506 LSLFYQIP 513



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIM-LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           Q  K   A+ +  K  Q   +S  ++ L C L N       FD  Q    +D  +WN MI
Sbjct: 68  QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQN---RDVYAWNLMI 124

Query: 78  SGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKS 131
           SG+ +  N ++    F    +    +  +    S    C  +    ++     K   +  
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWD 184

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V    ++I  Y ++  V  A  LFDEMP +++ +WNAMI+GY ++  A++ L L      
Sbjct: 185 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN---- 240

Query: 192 LGIRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            G+R  ++ ++ S+L  C+       G  +H    K  L  +      LI +Y + G L 
Sbjct: 241 -GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           D  K+F  +  +D+++WN++I  Y  + +  +A+ LF +M+   ++PD +T ++L
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 9/234 (3%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           +++V     +++ Y   G V LA   FD +  +++  WN MI+GY     + + ++   +
Sbjct: 83  IQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 142

Query: 189 -MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+  G+ P+  +  SVL  C  +     G ++H L  K     D      LI +Y +  
Sbjct: 143 FMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYK 199

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            + +A  LF E+  +D+ +WNAMISGY Q G  ++AL L + ++      DS+T V+LL 
Sbjct: 200 AVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLS 255

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           AC  AG  + G+    S    +G+ ++      ++DL    G+L +   +  +M
Sbjct: 256 ACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
           + ++LQ  K +H  +  S   ++      L+++YC  G++  A   F  IQ +DV  WN 
Sbjct: 63  YCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNL 122

Query: 270 MISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLAC 309
           MISGY + G   + +R F   M   G+ PD  TF ++L AC
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/579 (39%), Positives = 330/579 (56%), Gaps = 25/579 (4%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASW 73
           +++ G +  A++LFD IP+P V S+NIM    S I      V    +  +R    D  ++
Sbjct: 58  SREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTY 117

Query: 74  NTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             +  GF +   +   R+L   +     + N  + +A+I+ Y  CG +D A  +F ++  
Sbjct: 118 PFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCK 177

Query: 130 KSVVAWTAMISGYMKF-----------------GKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             VV W AMISGY +                  G+VD A K F +MP ++ V+W AMI G
Sbjct: 178 SDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDG 237

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y+  +  ++ L L R M    I+P+  ++ SVL  C+ L +L+LG+ +   + K+ +  D
Sbjct: 238 YLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKND 297

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
           T     LI MY KCG++E A  +F  + ++D  TW AM+ G A +G GE+AL +F +M  
Sbjct: 298 TFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLK 357

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             + PD +T+V +L AC H G+VD G ++F SM   +GI     HY CMVDLLG+AG L 
Sbjct: 358 ASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLK 417

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA ++IK MP KP   ++G LL ACR+HK  ++AE A   +  L P N A  YV   NIY
Sbjct: 418 EAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGA-VYVLQCNIY 476

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           AA  KWD +  +R  M +  + K PG S IE+  +VHEF +GD+ HP+   I+ KL ++ 
Sbjct: 477 AACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMT 536

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
             +K+AGY P+       + EE KE  +  HSEKLAIAFGLI    G  IR+ KNLR+C 
Sbjct: 537 SDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCI 596

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K +S +  RE+IVRD TRFHHF+ G+CSC DYW
Sbjct: 597 DCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 312/511 (61%), Gaps = 9/511 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKN------SVSWSAMISGYIECGQLDKAVE 122
           D ASWN M+ GF    N  +A  LF  M E+       + + +A  +G +   Q  K + 
Sbjct: 464 DLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIH 523

Query: 123 --LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + K+     +   + ++  Y+K G++  A K+F+++P+ + V W  +I+G VEN   E
Sbjct: 524 AVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEE 583

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L     M   G++P+  + ++++  CS L++L+ GKQ+H  + K     D   +T L+
Sbjct: 584 QALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLV 643

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG++EDA  LF  +  + V  WNAMI G AQHG  E+AL  F++MK  G+ PD +
Sbjct: 644 DMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRV 703

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +L AC+H+GL     + FDSM   YG+  + +HY+C+VD L RAG + EA  ++  
Sbjct: 704 TFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSS 763

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPF+    ++ TLL+ACRV    +  E  A  LF ++P+++A  YV L+NIYAA  +W++
Sbjct: 764 MPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAA-YVLLSNIYAAANQWEN 822

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
               R  MK  NV K PG+SWI++   VH F +GDR H E   I+ K++ + KR+K  GY
Sbjct: 823 AVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGY 882

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPD EFAL  + EE KE  L +HSEKLAIA+GL+K P  T +RV KNLRVCGDCH A KY
Sbjct: 883 VPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKY 942

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS + +REI++RD  RFHHF+ G CSCGDYW
Sbjct: 943 ISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 201/440 (45%), Gaps = 66/440 (15%)

Query: 9   WNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCIL-LNSDDV------- 55
           WN  L+ +  Q G+  +A + F      ++P  D ++Y ++LS +  LN  ++       
Sbjct: 265 WNKTLSSYL-QAGEGWEAVDCFRDMIKSRVP-CDSLTYIVILSVVASLNHLELGKQIHGA 322

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           V  F + Q + + ++A     I+ +V+  ++  AR +F  M E + +SW+ +ISG    G
Sbjct: 323 VVRFGWDQFVSVANSA-----INMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377

Query: 116 QLDKAVELF----------------------------------------KVAPVKSVVAW 135
             + ++ LF                                        K   V      
Sbjct: 378 LEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVS 437

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           TA+I  Y K GK++ AE LF      +L +WNAM+ G+  +    + L+L  +M   G +
Sbjct: 438 TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEK 497

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  + ++       L  LQ GKQ+H +V K     D   ++ ++ MY KCG+++ A K+
Sbjct: 498 ADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKV 557

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F +I   D V W  +ISG  ++G+ E+AL  + +M+  G++PD  TF  L+ AC+    +
Sbjct: 558 FNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTAL 617

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G Q   +++     A  P   T +VD+  + G + +A  L ++M  +   A++  ++ 
Sbjct: 618 EQGKQIHANIMK-LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMIV 675

Query: 376 ACRVHKRLDLAEFAAMNLFN 395
               H   +     A+N FN
Sbjct: 676 GLAQHGNAE----EALNFFN 691



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 194/451 (43%), Gaps = 65/451 (14%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----------CILLNSDDV 55
           V +N++LA +A   G+L D ++  +      ++  ++ML+           C+L  S   
Sbjct: 82  VTYNAILAAYA-HTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSP-- 138

Query: 56  VAAFDFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
            +A +  Q   +K    W+  ++G     + + + + +AR LF  MP ++ V W+ M+  
Sbjct: 139 -SASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKA 197

Query: 111 YIECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDL------AEKLFDEM 158
           Y+E G  D+ + LF       + P    V    M  G     + +L      A KLF   
Sbjct: 198 YVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCD 257

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
              ++  WN  ++ Y++     + +   R MI   +  ++ +   +L   + L+ L+LGK
Sbjct: 258 DDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGK 317

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  V +    +  +     I+MY K G +  A ++F +++  D+++WN +ISG A+ G
Sbjct: 318 QIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACN------------HAGLVDLGIQYFDSMV 326
             E +LRLF  +   G+ PD  T  ++L AC+            H   +  GI   DS V
Sbjct: 378 LEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGI-VLDSFV 436

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEA---------VDLIKKMPFKPQPAIFGTLLSAC 377
           +           T ++D+  + GK+ EA          DL           +      A 
Sbjct: 437 S-----------TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREAL 485

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           R+   +      A  +   N A AAGC V+L
Sbjct: 486 RLFSLMHERGEKADQITFANAAKAAGCLVRL 516



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 129/294 (43%), Gaps = 20/294 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ-RLP--IKDTASWNTMI 77
           G++K A+++F++IP PD V++  ++S  + N ++  A F + Q RL     D  ++ T++
Sbjct: 549 GEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLV 608

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                   + + + +   + + N        ++++  Y +CG ++ A  LF+    +SV 
Sbjct: 609 KACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVA 668

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLL-RM 188
            W AMI G  + G  + A   F+EM ++ +    VT+  +++    +    D  K    M
Sbjct: 669 LWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSM 728

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
               G+ P     S ++   S    +Q   +  ++V   P     T    L++     GD
Sbjct: 729 QKTYGVEPEIEHYSCLVDALSRAGHIQ---EAEKVVSSMPFEASATMYRTLLNACRVQGD 785

Query: 249 LED----ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            E     A KLF  +   D   +  + + YA   + E A+   + MK   +K +
Sbjct: 786 KETGERVAEKLF-TMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKE 838



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 30/260 (11%)

Query: 107 MISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +I+ Y +CG L  A +LF + P   + +V + A+++ Y   G++   EK  +        
Sbjct: 54  LITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHI---- 109

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
                              +LLR  + L  R    +LS +   C    S    + +    
Sbjct: 110 ------------------FRLLRQSVMLTTR---HTLSPLFKLCLLYGSPSASEALQGYA 148

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K  L  D      L+++Y K   + +A  LF  +  +DVV WN M+  Y + G G++ L
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF      G++PD ++   +L+      + +  ++   +      +       T     
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKT 268

Query: 345 LG---RAGKLVEAVDLIKKM 361
           L    +AG+  EAVD  + M
Sbjct: 269 LSSYLQAGEGWEAVDCFRDM 288



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVS 103
           + L   ++ +A   F ++P  D  +W T+ISG V+     +A      + LA  + +  +
Sbjct: 544 MYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYT 603

Query: 104 WSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           ++ ++        L++       + K+         T+++  Y K G ++ A  LF  M 
Sbjct: 604 FATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMN 663

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           T+++  WNAMI G  ++  AE+ L     M   G+ P+  +   VL  CSH
Sbjct: 664 TRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSH 714



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 31/172 (18%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNA 269
           S L LGK+ H ++  S L  D      LI+MY KCG L  A KLF       +D+VT+NA
Sbjct: 27  SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNA 86

Query: 270 MISGYAQHG------KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG---------- 313
           +++ YA  G      K  +A  +F  ++   M     T   L   C   G          
Sbjct: 87  ILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQG 146

Query: 314 -LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             V +G+Q+      D  +A        +V++  +  ++ EA  L  +MP +
Sbjct: 147 YAVKIGLQW------DVFVAG------ALVNIYAKFQRIREARVLFDRMPVR 186


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/529 (42%), Positives = 314/529 (59%), Gaps = 14/529 (2%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSA 106
           DD    FDF   +P +D   WN +ISG        +   LF  M ++      N  + ++
Sbjct: 358 DDARKVFDF---MPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAS 414

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG----YMKFGKVDLAEKLFDEMPTKN 162
           ++        +    ++  +A    +++ + +I+G    Y K G++D A K+F E  + +
Sbjct: 415 VLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDD 474

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +++   M+    +    ED +KL   M+  G+ P++  LSS+L  C+ LS+ + GKQVH 
Sbjct: 475 IISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHA 534

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            + K     D  A   L+  Y KCG +EDA   F  +  + +V+W+AMI G AQHG G++
Sbjct: 535 HLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKR 594

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL LF +M DEG+ P+ IT  ++L ACNHAGLVD   +YF+SM   +GI    +HY CM+
Sbjct: 595 ALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMI 654

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           D+LGRAGKL +A++L+  MPF+   A++G LL A RVH+  +L   AA  LF L P   +
Sbjct: 655 DILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEP-EKS 713

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G +V LAN YA+   WD++A++R  MK++NV K P  SW+E+   VH F  GD+ HP   
Sbjct: 714 GTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTR 773

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I+ KL EL   M  AGYVP++E  LH V    KE LL  HSE+LA+AF LI  P G PI
Sbjct: 774 DIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPI 833

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RV KNLR+C DCH A KYIS I  REII+RD  RFHHF +GTCSCGDYW
Sbjct: 834 RVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 162/346 (46%), Gaps = 46/346 (13%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           N +++ + + +  + AR +F  +P+   VSWS++++ Y   G    A+  F         
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVP 100

Query: 125 ----------KVAP-----------------VKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
                     K AP                 V  V    A+++ Y  FG VD A ++FDE
Sbjct: 101 CNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDE 160

Query: 158 M----PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
                  +N V+WN MI+ YV+N  + D + + R M+  G RPN    S V+  C+    
Sbjct: 161 YVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRD 220

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L+ G+QVH  V ++   KD      L+ MY K GD+E A  +F ++   DVV+WNA ISG
Sbjct: 221 LEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISG 280

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
              HG   +AL L  +MK  G+ P+  T  ++L AC  AG  +LG Q    MV      A
Sbjct: 281 CVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK---AVA 337

Query: 334 KPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
             D +    +VD+  + G L +A  +   MP +    ++  L+S C
Sbjct: 338 DFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGC 382



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 150/302 (49%), Gaps = 9/302 (2%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVEL 123
           ++  SWNTMIS +V+      A  +F  M       N   +S +++       L+   ++
Sbjct: 168 RNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQV 227

Query: 124 F----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                +    K V    A++  Y K G +++A  +F++MP  ++V+WNA I+G V +   
Sbjct: 228 HGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHD 287

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
              L+LL  M   G+ PN  +LSSVL  C+   +  LG+Q+H  + K+    D      L
Sbjct: 288 HRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGL 347

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD- 298
           + MY K G L+DA K+F  + R+D++ WNA+ISG +  G+  + L LF +M+ EG+  D 
Sbjct: 348 VDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDV 407

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           + T +A +L    +       +   ++    G+ +       ++D   + G+L  A+ + 
Sbjct: 408 NRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVF 467

Query: 359 KK 360
           K+
Sbjct: 468 KE 469



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 43/367 (11%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A   F+++P  D  SWN  ISG V   +  +A +L L M       N  + S+++ 
Sbjct: 255 DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLK 314

Query: 110 GYIECG--QLDKAVELFKVAPVKSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G   L + +  F V  V     + A  ++  Y K G +D A K+FD MP ++L+ 
Sbjct: 315 ACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           WNA+I+G   +    + L L   M   GL +  N ++L+SVL   +   ++   +QVH L
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHAL 434

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
             K  L  D+  +  LI  Y KCG L+ A K+F E +  D+++   M++  +Q   GE A
Sbjct: 435 AEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDA 494

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN---------------- 327
           ++LF +M  +G++PDS    +LL AC      + G Q    ++                 
Sbjct: 495 IKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYA 554

Query: 328 ----------DYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIF 370
                     D   +  P+     ++ M+  L + G    A+DL  +M      P     
Sbjct: 555 YAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITL 614

Query: 371 GTLLSAC 377
            ++LSAC
Sbjct: 615 TSVLSAC 621


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/564 (39%), Positives = 329/564 (58%), Gaps = 17/564 (3%)

Query: 16  FAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-PIKDTAS 72
           F KQ   G +K+  E    I    +V+Y+            V  AF  F       +  +
Sbjct: 324 FTKQLHCGVVKNGYEFAQDIRTALMVTYS--------KCSSVDEAFKLFSMADAAHNVVT 375

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAP 128
           W  MI GFVQ  N  KA DLF  M  +    N  ++S +++G           ++ K   
Sbjct: 376 WTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYY 435

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            K     TA++  Y+K G V  + ++F  +P K++V W+AM+ G  +   +E  +++   
Sbjct: 436 EKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQ 495

Query: 189 MIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           ++  G++PN  + SSV+  CS   ++++ GKQ+H    KS         + L++MY K G
Sbjct: 496 LVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKG 555

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++E A K+F   + +D+V+WN+MI+GY QHG  +KAL +F  M+++G+  D +TF+ +L 
Sbjct: 556 NIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLT 615

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC HAGLV+ G +YF+ M+ DY I  K +HY+CMVDL  RAG   +A+D+I  MPF   P
Sbjct: 616 ACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASP 675

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            I+ TLL+ACRVH+ L+L + AA  L +L P +A G YV L+NI+A    W++ A +R  
Sbjct: 676 TIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVG-YVLLSNIHAVAGNWEEKAHVRKL 734

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M E  V K  G SWIE+   +  F +GD  HP    ++ KL+EL  ++K  GY PD  + 
Sbjct: 735 MDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYV 794

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
            H V EE KE +L  HSE+LAIA+GLI +P G PI++ KNLR+CGDCH   + IS IE+R
Sbjct: 795 FHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEER 854

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
            +IVRD+ RFHHFK G CSCG YW
Sbjct: 855 TLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 166/378 (43%), Gaps = 73/378 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-------PDVVSYNIMLS------- 46
           M +K  V+W S+L+G+A  R  L D  E+   I Q       P+  ++  +L        
Sbjct: 165 MGIKNVVSWTSLLSGYA--RNGLND--EVIHLINQMQMEGVNPNGFTFATVLGALADESI 220

Query: 47  ---------------------------CILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
                                      C+ L S+ V  A   F  + ++D+ +WN MI G
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGG 280

Query: 80  F---------------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +               ++   +  +R +F    +  S       +  + CG +    E  
Sbjct: 281 YAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFA 340

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGL 183
           +          TA++  Y K   VD A KLF       N+VTW AMI G+V+N+  +  +
Sbjct: 341 QDIR-------TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAV 393

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            L   M   G+RPN  + S+VL G        L  Q+H  + K+   K  +  T L+  Y
Sbjct: 394 DLFCQMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAY 449

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            K G++ ++ ++F  I  KD+V W+AM++G AQ    EKA+ +F ++  EG+KP+  TF 
Sbjct: 450 VKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFS 509

Query: 304 ALLLAC-NHAGLVDLGIQ 320
           +++ AC + A  V+ G Q
Sbjct: 510 SVINACSSSAATVEHGKQ 527



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 16/336 (4%)

Query: 39  VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP- 97
           VS    L  + + ++D       F  + IK+  SW +++SG+ +     +   L   M  
Sbjct: 139 VSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQM 198

Query: 98  ---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT-----AMISGYMKFGKVD 149
                N  +++ ++    +   ++  V++  +  VK+   +T     A+I  Y+K   V 
Sbjct: 199 EGVNPNGFTFATVLGALADESIIEGGVQVHAMI-VKNGFEFTTFVCNALICMYLKSEMVG 257

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            AE +FD M  ++ VTWN MI GY    +  +G ++   M   G++ + +   + L  CS
Sbjct: 258 DAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCS 317

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWN 268
               L   KQ+H  V K+         T L+  Y KC  +++A KLF +     +VVTW 
Sbjct: 318 QQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWT 377

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI G+ Q+   +KA+ LF +M  EG++P+  T+  +L     + L  L  Q   +    
Sbjct: 378 AMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEK 437

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                 P   T ++D   + G +VE+  +   +P K
Sbjct: 438 V-----PSVATALLDAYVKTGNVVESARVFYSIPAK 468



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 142/320 (44%), Gaps = 20/320 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+ +         P    Y+  L  I L S    A    F   P+KD + +N ++  F
Sbjct: 21  GRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYA-HQLFDETPLKDISHYNRLLFDF 79

Query: 81  VQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQL-DKAV------ELFKVAPVKSV 132
            +  +  +A  LF  +      V    +      CG L D+ V      +  K   ++ V
Sbjct: 80  SRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDV 139

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              T+++  YMK    +    +FDEM  KN+V+W ++++GY  N   ++ + L+  M   
Sbjct: 140 SVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQME 199

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ PN  + ++VL   +  S ++ G QVH ++ K+     T     LI MY K   + DA
Sbjct: 200 GVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDA 259

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
             +F  +  +D VTWN MI GYA  G   +  ++F +M+  G+K     F   L  C+  
Sbjct: 260 EAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQ 319

Query: 311 ---------HAGLVDLGIQY 321
                    H G+V  G ++
Sbjct: 320 RELNFTKQLHCGVVKNGYEF 339


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 328/520 (63%), Gaps = 10/520 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ 116
            F+ +  +D  +WN +I+ +VQ +N  +A  LF  + +     N +++  M++ Y     
Sbjct: 264 LFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTS 323

Query: 117 LDKAV---ELFKVAPV-KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           L K     EL K A   + VV  TA++S Y +      A K+F +M +K+++TW  M   
Sbjct: 324 LAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 383

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N + ++ L+L + M   G RP +++L +VL  C+HL++LQ G+Q+H  + ++    +
Sbjct: 384 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRME 443

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI+MY KCG + +A  +F ++ ++D++ WN+M+  YAQHG  ++ L+LF++M+ 
Sbjct: 444 MVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQL 503

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G K D+++FV++L A +H+G V  G QYF +M+ D+ I   P+ Y C+VDLLGRAG++ 
Sbjct: 504 DGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQ 563

Query: 353 EAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           EAVD++ K+    P   ++ TLL ACR H + D A+ AA  +   +P+++ G YV L+N+
Sbjct: 564 EAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHS-GAYVVLSNV 622

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YAA   WD V R+R  M+   V K PG S IE+   VHEF  GDR HP    I+ +L  L
Sbjct: 623 YAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVL 682

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
              M+ AGY+PD +  LH V +E KE +L +HSE+LAIAFGL+  P GTP+RV KNLRVC
Sbjct: 683 NSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVC 742

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH ATKYIS +  REI+VRDT RFH+FKDG CSC DYW
Sbjct: 743 SDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 200/403 (49%), Gaps = 20/403 (4%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFD 60
           T V + ++L   A     LKD  E+  +I Q      ++ +   L+N       V  A+D
Sbjct: 105 TKVTYVAILNACASTE-SLKDGMEIHGQILQQGFEG-DVFVGTALINMYNKCGSVRGAWD 162

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
            F+RL  +D  SW  MI+  VQ    A AR L+  M       N ++   + + Y +   
Sbjct: 163 SFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHY 222

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMK-FGKVDL---AEKLFDEMPTKNLVTWNAMIAG 172
           L +   ++ +   + + +   +++  M  FG   L   A +LF++M  +++VTWN +I  
Sbjct: 223 LSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITF 282

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           YV+N    + ++L   +   GI+ N  +   +L   + L+SL  GK +H+LV ++   +D
Sbjct: 283 YVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 342

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T L+S+Y +C     A K+F+++  KDV+TW  M   YAQ+G  ++AL+LF +M+ 
Sbjct: 343 VVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQL 402

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG +P S T VA+L  C H   +  G Q    ++ + G   +    T ++++ G+ GK+ 
Sbjct: 403 EGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIEN-GFRMEMVVETALINMYGKCGKMA 461

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           EA  + +KM  K    ++ ++L A   H   D      + LFN
Sbjct: 462 EARSVFEKMA-KRDILVWNSMLGAYAQHGYYD----ETLQLFN 499



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 8/260 (3%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISG 110
           V  A   F+ L  KD  +W  MI  + Q+ +  +A  +F  M E++     V++ A+++ 
Sbjct: 56  VPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNA 115

Query: 111 YIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                 L   +E    + +      V   TA+I+ Y K G V  A   F  +  +++V+W
Sbjct: 116 CASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSW 175

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            AMIA  V++        L R M   G+ PN  +L +V         L  GK ++ LV  
Sbjct: 176 TAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSS 235

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             +  D   +   ++M+   G L DA +LF ++  +DVVTWN +I+ Y Q+    +A+RL
Sbjct: 236 RVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRL 295

Query: 287 FDKMKDEGMKPDSITFVALL 306
           F +++ +G+K + ITFV +L
Sbjct: 296 FGRLQQDGIKANDITFVLML 315



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 32/264 (12%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           E+N++    +I  Y +CG + +A ++F++   K V AWT MI  Y + G  D A  +F +
Sbjct: 37  EQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQ 96

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M  ++++                               P   +  ++L  C+   SL+ G
Sbjct: 97  MQEEDVM-------------------------------PTKVTYVAILNACASTESLKDG 125

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            ++H  + +     D    T LI+MY KCG +  A   F  ++ +DVV+W AMI+   QH
Sbjct: 126 MEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQH 185

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
            +   A  L+ +M+ +G+ P+ IT   +  A      +  G ++  S+V+   + +    
Sbjct: 186 DQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMESDVRV 244

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKM 361
               +++ G AG L +A  L + M
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDM 268



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 2/195 (1%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            +P+ +   ++L  CS   ++  G++VH  V      ++      LI MY +CG + +A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  ++RKDV  W  MI  Y Q G  ++AL +F +M++E + P  +T+VA+L AC    
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            +  G++    ++   G        T ++++  + G +  A D  K++  +   + +  +
Sbjct: 121 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAM 178

Query: 374 LSACRVHKRLDLAEF 388
           ++AC  H +  LA +
Sbjct: 179 IAACVQHDQFALARW 193


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/560 (39%), Positives = 340/560 (60%), Gaps = 22/560 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G  K+A+ +F+ +   + VS+ +++   L   +    + + F ++  +    D  +  T+
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSL-QYECFSKSVELFNQMRAELMAIDQFALATL 377

Query: 77  ISGFVQKKNMAKARDLF-LAMPEKNS---VSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ISG   + ++   R L  L +   ++   V  +++IS Y +CG L  A  +F     + +
Sbjct: 378 ISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V+WT+MI+ Y + G +  A + FD M T+N +TWNAM+  Y+++   EDGLK+   M+  
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 193 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + P+  +  ++  GC+ + + +LG Q+     K+ L  + +     I+MY KCG + +
Sbjct: 498 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISE 557

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A KLF  +  KDVV+WNAMI+GY+QHG G++A + FD M  +G KPD I++VA+L  C+H
Sbjct: 558 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 617

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +GLV  G  YFD M   +GI+   +H++CMVDLLGRAG L EA DLI KMP KP   ++G
Sbjct: 618 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 677

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LLSAC++H   +LAE AA ++F L+  + +G Y+ LA IY+   K DD A++R  M++ 
Sbjct: 678 ALLSACKIHGNDELAELAAKHVFELDSPD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 736

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PGYSW+EV   VH F++ D  HP++++I  KL EL +++   GYV          
Sbjct: 737 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRT-------- 788

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            E  + +  + HSEKLA+AFG++ +P   PI + KNLR+CGDCH   K IS++  RE ++
Sbjct: 789 -ESPRSE--IHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 845

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK G+CSCGDYW
Sbjct: 846 RDGVRFHHFKSGSCSCGDYW 865



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 161/330 (48%), Gaps = 42/330 (12%)

Query: 21  GKLKDAQELFD-KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I +P+V+++NIM++        +  A + F R+P +D ASWNT++SG
Sbjct: 53  GALSDARRLLRADIKEPNVITHNIMMNG-YAKQGSLSDAEELFDRMPRRDVASWNTLMSG 111

Query: 80  FVQKKNMAKARDLFLAM-----------------------------PEKNSVSW------ 104
           + Q +      + F++M                             P+   + W      
Sbjct: 112 YFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWG 171

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                +A++  ++ CG +D A  LF      ++    +M++GY K   +D A + F++M 
Sbjct: 172 DPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA 231

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++V+WN MIA   ++    + L L+  M   G+R ++++ +S L  C+ L SL  GKQ
Sbjct: 232 ERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ 291

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V +S    D    + LI +Y KCG  ++A ++F  +Q ++ V+W  +I G  Q+  
Sbjct: 292 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 351

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             K++ LF++M+ E M  D      L+  C
Sbjct: 352 FSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 19/329 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G +  A  LF +I +P +   N ML+    L   D    A ++F+ +  +D  SWN MI+
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH---AIEYFEDMAERDVVSWNMMIA 243

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQL-------DKAVELFKVAPVK 130
              Q   + +A  L + M  K   +  +   S    C +L           ++ +  P  
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 303

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
                +A+I  Y K G    A+++F+ +  +N V+W  +I G ++       ++L   M 
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMR 363

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              +  +  +L++++ GC +   L LG+Q+H L  KS   +       LIS+Y KCGDL+
Sbjct: 364 AELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A  +F  +  +D+V+W +MI+ Y+Q G   KA   FD M       ++IT+ A+L A  
Sbjct: 424 NAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYI 479

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             G  + G++ + +M++   +   PD  T
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVT--PDWVT 506



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 47/347 (13%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           + ++  Y  CG L  A  L + A +K  +V+    M++GY K G +  AE+LFD MP ++
Sbjct: 43  NTLLHAYFSCGALSDARRLLR-ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRD 101

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVH 221
           + +WN +++GY +     DGL+    M   G   PNA +   V+  C  L   +L  Q+ 
Sbjct: 102 VASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL 161

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-------------------- 261
            L +K     D    T L+ M+ +CG ++ A +LF +I+R                    
Sbjct: 162 GLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGID 221

Query: 262 -----------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
                      +DVV+WN MI+  +Q G+  +AL L  +M  +G++ DS T+ + L AC 
Sbjct: 222 HAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 281

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-- 368
               +  G Q    ++        P   + +++L  + G   EA  +   +  +   +  
Sbjct: 282 RLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWT 340

Query: 369 --IFGTLLSACRVHKRLDL-----AEFAAMNLFNLNPANAAGCYVQL 408
             I G+L   C   K ++L     AE  A++ F L     +GC+ ++
Sbjct: 341 VLIGGSLQYEC-FSKSVELFNQMRAELMAIDQFALATL-ISGCFNRM 385


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 336/601 (55%), Gaps = 55/601 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G   DA+ + D +P   VV ++ +++    +  D   A+   +R+       +  +WN +
Sbjct: 69  GATADARSVLDGMPHRTVVGWSALIAA-HASHGDAEGAWGLLERMRSDGVEPNVITWNGL 127

Query: 77  ISGFVQKKNMAKARDLFLAM---------PEKNSVSW----------------------- 104
           +SG  +     +ARD  LA+         P+   VS                        
Sbjct: 128 VSGLNRS---GRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK 184

Query: 105 ----------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
                     +A+I  Y +CG+ D+ V +F  +    V +  A+++G  +  +V  A +L
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRL 244

Query: 155 FDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           F E   +    N+V+W +++A  V+N    + + L R M   GI PN+ ++  VL   ++
Sbjct: 245 FREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFAN 304

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           +++L  G+  H    +     D    + L+ MY KCG + DA  +F  +  ++VV+WNAM
Sbjct: 305 IAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAM 364

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I GYA HG+ E A+RLF  M+    KPD +TF  +L AC+ AG  + G  YF+ M + +G
Sbjct: 365 IGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHG 424

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           I+ + +HY CMV LLGRAGKL +A D+I +MPF+P   I+G+LL +CRVH  + LAE AA
Sbjct: 425 ISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAA 484

Query: 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
            NLF L P N AG YV L+NIYA+ K WD V R+R  MK   + K  G SWIE+   VH 
Sbjct: 485 ENLFQLEPEN-AGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHM 543

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
             +GD  HP + +I EKLK L   M+  G+ P  ++ LH V E+ K+ +L  HSEKLA+A
Sbjct: 544 LLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVA 603

Query: 511 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
            GLI    GTP++V KNLR+CGDCH A K+IS+ E+REI VRDT RFHHFKDG CSC DY
Sbjct: 604 LGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADY 663

Query: 571 W 571
           W
Sbjct: 664 W 664



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 35/228 (15%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA-----GYVENSW------------ 178
           ++++  Y++FG    A  + D MP + +V W+A+IA     G  E +W            
Sbjct: 59  SSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVE 118

Query: 179 ------------------AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
                             A D +  L  M G G  P+A+ +S  L     +  + +G+Q+
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQL 178

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  V K+    D    T LI MY KCG  ++  ++F E    DV + NA+++G +++ + 
Sbjct: 179 HGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV 238

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            +ALRLF +    G++ + +++ +++  C   G     +  F  M ++
Sbjct: 239 SEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE 286



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    + L+  Y + G   DA  +   +  + VV W+A+I+ +A HG  E A  L ++M
Sbjct: 53  RDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERM 112

Query: 291 KDEGMKPDSITFVALLLACNHAG 313
           + +G++P+ IT+  L+   N +G
Sbjct: 113 RSDGVEPNVITWNGLVSGLNRSG 135


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 356/637 (55%), Gaps = 82/637 (12%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAF-DFFQRLPIKDTAS 72
           F K  G L+ A ++FD++P  +VV++ +M++    L  S D V  F D      + D  +
Sbjct: 88  FVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFT 147

Query: 73  WNTMISG--------------------------------------FVQKKNMAKARDLFL 94
            + ++S                                        V   ++  AR +F 
Sbjct: 148 LSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFD 207

Query: 95  AMPEKNSVSWSAMISGYIECGQLDK-AVELF------KVAP------------------- 128
            MP  N +SW+A+I+GY++ G  D+ A+ELF      +V P                   
Sbjct: 208 RMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIW 267

Query: 129 ---------VKSVVA-----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
                    VK  +A       ++IS Y + G ++ A K FD +  KNLV++N ++  Y 
Sbjct: 268 LGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           ++  +E+  +L   + G G   NA + +S+L G S + ++  G+Q+H  + KS    +  
Sbjct: 328 KSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLH 387

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               LISMY +CG++E A ++F E+   +V++W +MI+G+A+HG   +AL  F KM + G
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAG 447

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           + P+ +T++A+L AC+H GL+  G+++F SM  ++GI  + +HY C+VDLLGR+G L EA
Sbjct: 448 VSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEA 507

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
           ++L+  MPFK    +  T L ACRVH  +DL + AA  +   +P + A  Y+ L+N++A+
Sbjct: 508 MELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAA-YILLSNLHAS 566

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
             +W++VA IR  MKE N+ K  G SWIEV   VH+F  GD  HP+   I+++L +L  +
Sbjct: 567 AGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALK 626

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           +K  GY+P  +F LH V EE KEQ L  HSEK+A+A+G I      PIRVFKNLRVCGDC
Sbjct: 627 IKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDC 686

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H A KY S + ++EI++RD  RFHHFKDGTCSC DYW
Sbjct: 687 HTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 172/338 (50%), Gaps = 20/338 (5%)

Query: 42  NIMLSCILLN-----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           ++ + C L++     + D+ +A+  F R+P ++  +W  MI+ F Q      A DLFL M
Sbjct: 77  DVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDM 136

Query: 97  PEKNSV----SWSAMISGYIECGQLDKAVELFKVAPVKS-----VVAWTAMISGYMKF-- 145
                V    + S ++S   E G L    + F    +KS     V    +++  Y K   
Sbjct: 137 VLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCVGCSLVDMYAKCVA 195

Query: 146 -GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSS 203
            G VD A K+FD MP  N+++W A+I GYV++   + + ++L   M+   ++PN  + SS
Sbjct: 196 DGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSS 255

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL  C++LS + LG+QV+ LV K  L         LISMY +CG++E+A K F  +  K+
Sbjct: 256 VLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKN 315

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           +V++N +++ YA+    E+A  LF++++  G   ++ TF +LL   +  G +  G Q   
Sbjct: 316 LVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQ-IH 374

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           S +   G  +       ++ +  R G +  A  +  +M
Sbjct: 375 SRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 174/367 (47%), Gaps = 36/367 (9%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + D+VS++ ++SC   N     A   FF  L             GF    N      +F 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLE-----------CGFY--PNEYCFTGVFR 50

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-VVAWTAMISGYMKF-GKVDLAE 152
           A   K ++S   +I G+           L K    +S V    A+I  ++K  G ++ A 
Sbjct: 51  ACSNKENISLGKIIFGF-----------LLKTGYFESDVCVGCALIDMFVKGNGDLESAY 99

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           K+FD MP +N+VTW  MI  + +  ++ D + L   M+  G  P+  +LS V+  C+ + 
Sbjct: 100 KVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMG 159

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWNA 269
            L LG+Q H LV KS L  D      L+ MY KC   G ++DA K+F  +   +V++W A
Sbjct: 160 LLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTA 219

Query: 270 MISGYAQHGKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           +I+GY Q G  ++ A+ LF +M    +KP+  TF ++L AC +   + LG Q + ++V  
Sbjct: 220 IITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVY-ALVVK 278

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
             +A+       ++ +  R G +  A      + F+     + T+++A    K L+  E 
Sbjct: 279 MRLASINCVGNSLISMYSRCGNMENARKAFDVL-FEKNLVSYNTIVNA--YAKSLNSEE- 334

Query: 389 AAMNLFN 395
            A  LFN
Sbjct: 335 -AFELFN 340


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/580 (40%), Positives = 333/580 (57%), Gaps = 47/580 (8%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +PD+  +  ++S    N   +  A   F R   +D  S+  +I+G+    N+  A+++F 
Sbjct: 98  EPDLYVHTSLISMYAQNGR-LEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFD 156

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFK--------------------------VAP 128
            +P K+ VSW+AMISGY E G   +A+ELFK                          V  
Sbjct: 157 EIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVEL 216

Query: 129 VKSVVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
            + V +W              A+I  Y K G+V+ A  LF+ +  K++V+WN +I GY  
Sbjct: 217 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTH 276

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
            +  ++ L L + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  V+     KD T 
Sbjct: 277 MNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIH--VYIDKKLKDVTN 334

Query: 236 L----TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                T LI MY KCGD+E A ++F  +  K + +WNAMI G+A HG+      LF +M+
Sbjct: 335 APSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMR 394

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++PD ITFV LL AC+H+G +DLG   F SM  DY I  K +HY CM+DLLG +G  
Sbjct: 395 KNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLF 454

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA ++IK MP +P   I+ +LL ACR H  L+LAE  A NL  + P N  G YV L+NI
Sbjct: 455 KEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENP-GSYVLLSNI 513

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA   +WD+VA++R  +    + K+PG S IE+ + VHEF  GD++HP    I+  L+E+
Sbjct: 514 YATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEM 573

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
           E  ++ AG+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC
Sbjct: 574 EALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 633

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +CH ATK +S I KREII RD TRFHHF+DG CSC D+W
Sbjct: 634 RNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 119/251 (47%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F     A  +F  +   N + WN M+ GY  +S     LKL  +MI LG+ PN+ +   +
Sbjct: 13  FDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFL 72

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---------- 254
           L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K          
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 255 ---------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                                +F EI  KDVV+WNAMISGYA+ G  ++AL LF +M   
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V +L AC  +  V+LG Q   S ++D+G  +       ++DL  + G++  
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 354 AVDLIKKMPFK 364
           A  L + +  K
Sbjct: 252 ACGLFEGLSCK 262



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 153/363 (42%), Gaps = 64/363 (17%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSCILLNS----- 52
           VK  V+WN++++G+A + G  K+A ELF ++ + +V         ++ +C    S     
Sbjct: 160 VKDVVSWNAMISGYA-ETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGR 218

Query: 53  ------DD----------------------VVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                 DD                      V  A   F+ L  KD  SWNT+I G+    
Sbjct: 219 QVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMN 278

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
              +A  LF  M       N V+  +++      G +D  + + ++    +K V      
Sbjct: 279 LYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSL 338

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A ++F+ M  K+L +WNAMI G+  +  A  G  L   M   GI
Sbjct: 339 RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGI 398

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH   L LG+     +FKS + +D   +TP +  Y    DL     
Sbjct: 399 EPDDITFVGLLSACSHSGKLDLGRH----IFKS-MTQDYD-ITPKLEHYGCMIDLLGHSG 452

Query: 255 LFLEIQ--------RKDVVTWNAMISGYAQHGKGEKALRLF-DKMKDEGMKPDSITFVAL 305
           LF E +          D V W +++    +HG  E A     + MK E   P S   ++ 
Sbjct: 453 LFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSN 512

Query: 306 LLA 308
           + A
Sbjct: 513 IYA 515


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 352/638 (55%), Gaps = 79/638 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           NS+++  +K  G L+DA+ +FD +   D VS+N M++  ++N  D+  AF+ F  +    
Sbjct: 242 NSLISMLSKS-GMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDL-EAFETFNNMQLAG 299

Query: 67  -----------IKDTASWN-----------TMISGFVQKKNMAKAR-------------- 90
                      IK  AS             T+ SG    +N+  A               
Sbjct: 300 AKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAF 359

Query: 91  DLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELF------------------------- 124
            LF  M    SV SW+AMISGY++ G  D+AV LF                         
Sbjct: 360 SLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAV 419

Query: 125 ----------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
                     K    KS    TA++  ++K G +  A K+F+ + TK+++ W+AM+AGY 
Sbjct: 420 FISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYA 479

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDT 233
           +    E+  K+   +   GI+PN  +  S++  C+   +S++ GKQ H    K  L    
Sbjct: 480 QAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNAL 539

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+++Y K G++E A ++F   + +D+V+WN+MISGYAQHG+ +KAL +F++M+  
Sbjct: 540 CVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKR 599

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++ D+ITF+ ++ AC HAGLV  G  YF+ M+ND+ I    +HY+CM+DL  RAG L +
Sbjct: 600 NLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGK 659

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+D+I  MPF P   ++  +L+A RVH+ ++L + AA  + +L P ++A  YV L+NIYA
Sbjct: 660 AMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAA-YVLLSNIYA 718

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A   W +   +R  M +  V K PGYSWIEV    + F +GD  HP    I+ KL EL  
Sbjct: 719 AAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNT 778

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           R++  GY PD  +  H + +E KE +L  HSE+LAIAFGLI      P+++ KNLRVCGD
Sbjct: 779 RLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGD 838

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K +S +EKR I+VRD+ RFHHFK G CSCGDYW
Sbjct: 839 CHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 195/414 (47%), Gaps = 66/414 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +  V+WNS+L G++  R       ELF  +     +PD  + + +++   L +   V
Sbjct: 163 MGDRDVVSWNSLLTGYSWNRFN-DQVWELFCLMQVEGYRPDYYTVSTVIAA--LANQGAV 219

Query: 57  AAFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           A       L +K     +    N++IS   +   +  AR +F  M  K+SVSW++MI+G+
Sbjct: 220 AIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGH 279

Query: 112 IECGQLDKAVELFK------VAPVKSVVA------------------------------- 134
           +  GQ  +A E F         P  +  A                               
Sbjct: 280 VINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQ 339

Query: 135 --WTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
              TA++    K  ++D A  LF  M   +++V+W AMI+GY++N   +  + L  +M  
Sbjct: 340 NVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRR 399

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G++PN  + S++L     +       ++H  V K+   K ++  T L+  + K G++ D
Sbjct: 400 EGVKPNHFTYSTILT----VQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISD 455

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F  I+ KDV+ W+AM++GYAQ G+ E+A ++F ++  EG+KP+  TF +++ AC  
Sbjct: 456 AVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTA 515

Query: 312 -AGLVDLGIQYFDSMVNDYGIAAKPDHYTC----MVDLLGRAGKLVEAVDLIKK 360
               V+ G Q+     + Y I  + ++  C    +V L  + G +  A ++ K+
Sbjct: 516 PTASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKR 564



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 147/293 (50%), Gaps = 13/293 (4%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           Q  VV+ N   +  LL   D   A   F + P++D    N ++  + +     +A  LF+
Sbjct: 35  QSHVVALN---ARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFV 91

Query: 95  AM------PEKNSVSWSAMISGYIECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFG 146
           ++      P+  ++S    +      G + + V  +  K   V  +    +++  Y K G
Sbjct: 92  SLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTG 151

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            V    ++FDEM  +++V+WN+++ GY  N + +   +L  +M   G RP+  ++S+V+ 
Sbjct: 152 NVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIA 211

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
             ++  ++ +G Q+H LV K     +      LISM  K G L DA  +F  ++ KD V+
Sbjct: 212 ALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVS 271

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           WN+MI+G+  +G+  +A   F+ M+  G KP   TF +++ +C  A L +LG+
Sbjct: 272 WNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC--ASLKELGL 322



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 150/331 (45%), Gaps = 36/331 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVV 56
           +  K  + W+++LAG+A Q G+ ++A ++F ++ + + +  N    C ++N+       V
Sbjct: 463 IETKDVIAWSAMLAGYA-QAGETEEAAKIFHQLTR-EGIKPNEFTFCSIINACTAPTASV 520

Query: 57  AAFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                F    IK          +++++ + ++ N+  A ++F    E++ VSW++MISGY
Sbjct: 521 EQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGY 580

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            + GQ  KA+E+F+    +++    + +  +IS     G V   +  F+ M   + +   
Sbjct: 581 AQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPT 640

Query: 168 AMIAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLV 224
                 + + ++  G+  K + ++ G+   P A+    VL       +++LGK    +++
Sbjct: 641 MEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKII 700

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----VTW-------NAMIS 272
              P  + + A   L ++Y   G+  +   +   + ++ V      +W        + ++
Sbjct: 701 SLEP--QHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLA 758

Query: 273 GYAQHGKGE----KALRLFDKMKDEGMKPDS 299
           G   H   +    K   L  +++D G +PD+
Sbjct: 759 GDLSHPLSDHIYSKLSELNTRLRDVGYQPDT 789


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/564 (39%), Positives = 329/564 (58%), Gaps = 17/564 (3%)

Query: 16  FAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-PIKDTAS 72
           F KQ   G +K+  E    I    +V+Y+            V  AF  F       +  +
Sbjct: 324 FTKQLHCGVVKNGYEFAQDIRTALMVTYS--------KCSSVDEAFKLFSMADAAHNVVT 375

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAP 128
           W  MI GFVQ  N  KA DLF  M  +    N  ++S +++G           ++ K   
Sbjct: 376 WTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYY 435

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            K     TA++  Y+K G V  + ++F  +P K++V W+AM+ G  +   +E  +++   
Sbjct: 436 EKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQ 495

Query: 189 MIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           ++  G++PN  + SSV+  CS   ++++ GKQ+H    KS         + L++MY K G
Sbjct: 496 LVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKG 555

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++E A K+F   + +D+V+WN+MI+GY QHG  +KAL +F  M+++G+  D +TF+ +L 
Sbjct: 556 NIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLT 615

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC HAGLV+ G +YF+ M+ DY I  K +HY+CMVDL  RAG   +A+D+I  MPF   P
Sbjct: 616 ACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASP 675

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            I+ TLL+ACRVH+ L+L + AA  L +L P +A G YV L+NI+A    W++ A +R  
Sbjct: 676 TIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVG-YVLLSNIHAVAGNWEEKAHVRKL 734

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M E  V K  G SWIE+   +  F +GD  HP    ++ KL+EL  ++K  GY PD  + 
Sbjct: 735 MDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYV 794

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
            H V EE KE +L  HSE+LAIA+GLI +P G PI++ KNLR+CGDCH   + IS IE+R
Sbjct: 795 FHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEER 854

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
            +IVRD+ RFHHFK G CSCG YW
Sbjct: 855 TLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 166/378 (43%), Gaps = 73/378 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-------PDVVSYNIMLS------- 46
           M +K  V+W S+L+G+A  R  L D  E+   I Q       P+  ++  +L        
Sbjct: 165 MGIKNVVSWTSLLSGYA--RNGLND--EVIHLINQMQMEGVNPNGFTFATVLGALADESI 220

Query: 47  ---------------------------CILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
                                      C+ L S+ V  A   F  + ++D+ +WN MI G
Sbjct: 221 IEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGG 280

Query: 80  F---------------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +               ++   +  +R +F    +  S       +  + CG +    E  
Sbjct: 281 YAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFA 340

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGL 183
           +          TA++  Y K   VD A KLF       N+VTW AMI G+V+N+  E  +
Sbjct: 341 QDIR-------TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAV 393

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            L   M   G+RPN  + S+VL G        L  Q+H  + K+   K  +  T L+  Y
Sbjct: 394 DLFCQMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAY 449

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            K G++ ++ ++F  I  KD+V W+AM++G AQ    EKA+ +F ++  EG+KP+  TF 
Sbjct: 450 VKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFS 509

Query: 304 ALLLAC-NHAGLVDLGIQ 320
           +++ AC + A  V+ G Q
Sbjct: 510 SVINACSSSAATVEHGKQ 527



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 153/336 (45%), Gaps = 16/336 (4%)

Query: 39  VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP- 97
           VS    L  + + ++D       F  + IK+  SW +++SG+ +     +   L   M  
Sbjct: 139 VSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQM 198

Query: 98  ---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT-----AMISGYMKFGKVD 149
                N  +++ ++    +   ++  V++  +  VK+   +T     A+I  Y+K   V 
Sbjct: 199 EGVNPNGFTFATVLGALADESIIEGGVQVHAMI-VKNGFEFTTFVCNALICMYLKSEMVG 257

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            AE +FD M  ++ VTWN MI GY    +  +G ++   M   G++ + +   + L  CS
Sbjct: 258 DAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCS 317

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWN 268
               L   KQ+H  V K+         T L+  Y KC  +++A KLF +     +VVTW 
Sbjct: 318 QQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWT 377

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI G+ Q+   EKA+ LF +M  EG++P+  T+  +L     + L  L  Q   +    
Sbjct: 378 AMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEK 437

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                 P   T ++D   + G +VE+  +   +P K
Sbjct: 438 V-----PSVATALLDAYVKTGNVVESARVFYSIPAK 468



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 142/320 (44%), Gaps = 20/320 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+ +         P    Y+  L  I L S    A    F   P+KD + +N ++  F
Sbjct: 21  GRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYA-HQLFDETPLKDISHYNRLLFDF 79

Query: 81  VQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQL-DKAV------ELFKVAPVKSV 132
            +  +  +A  LF  +      V    +      CG L D+ V      +  K   ++ V
Sbjct: 80  SRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDV 139

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              T+++  YMK    +    +FDEM  KN+V+W ++++GY  N   ++ + L+  M   
Sbjct: 140 SVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQME 199

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ PN  + ++VL   +  S ++ G QVH ++ K+     T     LI MY K   + DA
Sbjct: 200 GVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDA 259

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
             +F  +  +D VTWN MI GYA  G   +  ++F +M+  G+K     F   L  C+  
Sbjct: 260 EAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQ 319

Query: 311 ---------HAGLVDLGIQY 321
                    H G+V  G ++
Sbjct: 320 RELNFTKQLHCGVVKNGYEF 339


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 340/560 (60%), Gaps = 22/560 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G  K+A+ +F+ +   + VS+ +++   L   +    + + F ++  +    D  +  T+
Sbjct: 309 GSFKEAKRVFNSLQDRNSVSWTVLIGGSL-QYECFSKSVELFNQMRAELMAIDQFALATL 367

Query: 77  ISGFVQKKNMAKARDLF-LAMPEKNS---VSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ISG   + ++   R L  L +   ++   V  +++IS Y +CG L  A  +F     + +
Sbjct: 368 ISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 427

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V+WT+MI+ Y + G +  A + FD M T+N +TWNAM+  Y+++   EDGLK+   M+  
Sbjct: 428 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 487

Query: 193 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + P+  +  ++  GC+ + + +LG Q+     K+ L  + +     I+MY KCG + +
Sbjct: 488 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISE 547

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A KLF  +  KDVV+WNAMI+GY+QHG G++A + FD M  +G KPD I++VA+L  C+H
Sbjct: 548 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 607

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +GLV  G  YFD M   +GI+   +H++CMVDLLGRAG L EA DLI KMP KP   ++G
Sbjct: 608 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 667

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LLSAC++H   +LAE AA ++F L+  + +G Y+ LA IY+   K DD A++R  M++ 
Sbjct: 668 ALLSACKIHGNDELAELAAKHVFELDSPD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 726

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PGYSW+EV   VH F++ D  HP++++I  K+ EL +++   GYV          
Sbjct: 727 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRT-------- 778

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            E  + +  + HSEKLA+AFG++ +P   PI + KNLR+CGDCH   K IS++  RE ++
Sbjct: 779 -ESPRSE--IHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 835

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK G+CSCGDYW
Sbjct: 836 RDGVRFHHFKSGSCSCGDYW 855



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 22/307 (7%)

Query: 21  GKLKDAQELFD-KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS- 78
           G L DA+ L    I +P+V+++NIM++        +  A + F R+P +D ASWNT++S 
Sbjct: 69  GALSDARRLLRADIKEPNVITHNIMMNG-YAKQGSLSDAEELFDRMPRRDVASWNTLMSD 127

Query: 79  -----GFVQKKNMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDKAVE 122
                G          R+L    P+   + W           +A++  ++ CG +D A  
Sbjct: 128 TSRPAGSWMSCGALGCREL---APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASR 184

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF      ++    +M++GY K   +D A + F++M  +++V+WN MIA   ++    + 
Sbjct: 185 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 244

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L L+  M   G+R ++++ +S L  C+ L SL  GKQ+H  V +S    D    + LI +
Sbjct: 245 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 304

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG  ++A ++F  +Q ++ V+W  +I G  Q+    K++ LF++M+ E M  D    
Sbjct: 305 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 364

Query: 303 VALLLAC 309
             L+  C
Sbjct: 365 ATLISGC 371



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 184/418 (44%), Gaps = 90/418 (21%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----------CILL--- 50
             +  N ++ G+AKQ G L DA+ELFD++P+ DV S+N ++S           C  L   
Sbjct: 86  NVITHNIMMNGYAKQ-GSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCR 144

Query: 51  -----------------NSDDVVAAFDFFQRLPIKDTASW-------------NTMISGF 80
                            + D   A  D F R    D AS              N+M++G+
Sbjct: 145 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 204

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV-------- 132
            +   +  A + F  M E++ VSW+ MI+   + G++ +A+ L      K V        
Sbjct: 205 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 264

Query: 133 -----------VAW--------------------TAMISGYMKFGKVDLAEKLFDEMPTK 161
                      + W                    +A+I  Y K G    A+++F+ +  +
Sbjct: 265 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR 324

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N V+W  +I G ++       ++L   M    +  +  +L++++ GC +   L LG+Q+H
Sbjct: 325 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 384

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            L  KS   +       LIS+Y KCGDL++A  +F  +  +D+V+W +MI+ Y+Q G   
Sbjct: 385 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNII 444

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
           KA   FD M       ++IT+ A+L A    G  + G++ + +M++   +   PD  T
Sbjct: 445 KAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVT--PDWVT 496


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 340/560 (60%), Gaps = 22/560 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G  K+A+ +F+ +   + VS+ +++   L   +    + + F ++  +    D  +  T+
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSL-QYECFSKSVELFNQMRAELMAIDQFALATL 377

Query: 77  ISGFVQKKNMAKARDLF-LAMPEKNS---VSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ISG   + ++   R L  L +   ++   V  +++IS Y +CG L  A  +F     + +
Sbjct: 378 ISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDI 437

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V+WT+MI+ Y + G +  A + FD M T+N +TWNAM+  Y+++   EDGLK+   M+  
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 193 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + P+  +  ++  GC+ + + +LG Q+     K+ L  + +     I+MY KCG + +
Sbjct: 498 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISE 557

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A KLF  +  KDVV+WNAMI+GY+QHG G++A + FD M  +G KPD I++VA+L  C+H
Sbjct: 558 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 617

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +GLV  G  YFD M   +GI+   +H++CMVDLLGRAG L EA DLI KMP KP   ++G
Sbjct: 618 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 677

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LLSAC++H   +LAE AA ++F L+  + +G Y+ LA IY+   K DD A++R  M++ 
Sbjct: 678 ALLSACKIHGNDELAELAAKHVFELDSPD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDK 736

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PGYSW+EV   VH F++ D  HP++++I  K+ EL +++   GYV          
Sbjct: 737 GIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRT-------- 788

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            E  + +  + HSEKLA+AFG++ +P   PI + KNLR+CGDCH   K IS++  RE ++
Sbjct: 789 -ESPRSE--IHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVI 845

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK G+CSCGDYW
Sbjct: 846 RDGVRFHHFKSGSCSCGDYW 865



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 161/330 (48%), Gaps = 42/330 (12%)

Query: 21  GKLKDAQELFD-KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I +P+V+++NIM++        +  A + F R+P +D ASWNT++SG
Sbjct: 53  GALSDARRLLRADIKEPNVITHNIMMNG-YAKQGSLSDAEELFDRMPRRDVASWNTLMSG 111

Query: 80  FVQKKNMAKARDLFLAM-----------------------------PEKNSVSW------ 104
           + Q +      + F++M                             P+   + W      
Sbjct: 112 YFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWG 171

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                +A++  ++ CG +D A  LF      ++    +M++GY K   +D A + F++M 
Sbjct: 172 DPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA 231

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++V+WN MIA   ++    + L L+  M   G+R ++++ +S L  C+ L SL  GKQ
Sbjct: 232 ERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ 291

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V +S    D    + LI +Y KCG  ++A ++F  +Q ++ V+W  +I G  Q+  
Sbjct: 292 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 351

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             K++ LF++M+ E M  D      L+  C
Sbjct: 352 FSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 19/329 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G +  A  LF +I +P +   N ML+    L   D    A ++F+ +  +D  SWN MI+
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH---AIEYFEDMAERDVVSWNMMIA 243

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQL-------DKAVELFKVAPVK 130
              Q   + +A  L + M  K   +  +   S    C +L           ++ +  P  
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 303

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
                +A+I  Y K G    A+++F+ +  +N V+W  +I G ++       ++L   M 
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMR 363

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              +  +  +L++++ GC +   L LG+Q+H L  KS   +       LIS+Y KCGDL+
Sbjct: 364 AELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A  +F  +  +D+V+W +MI+ Y+Q G   KA   FD M       ++IT+ A+L A  
Sbjct: 424 NAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYI 479

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             G  + G++ + +M++   +   PD  T
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVT--PDWVT 506



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 158/347 (45%), Gaps = 47/347 (13%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           + ++  Y+ CG L  A  L + A +K  +V+    M++GY K G +  AE+LFD MP ++
Sbjct: 43  NTLLHAYLSCGALSDARRLLR-ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRD 101

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVH 221
           + +WN +++GY +     DGL+    M   G   PNA +   V+  C  L   +L  Q+ 
Sbjct: 102 VASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL 161

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-------------------- 261
            L +K     D    T L+ M+ +CG ++ A +LF +I+R                    
Sbjct: 162 GLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGID 221

Query: 262 -----------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
                      +DVV+WN MI+  +Q G+  +AL L  +M  +G++ DS T+ + L AC 
Sbjct: 222 HAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 281

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-- 368
               +  G Q    ++        P   + +++L  + G   EA  +   +  +   +  
Sbjct: 282 RLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWT 340

Query: 369 --IFGTLLSACRVHKRLDL-----AEFAAMNLFNLNPANAAGCYVQL 408
             I G+L   C   K ++L     AE  A++ F L     +GC+ ++
Sbjct: 341 VLIGGSLQYEC-FSKSVELFNQMRAELMAIDQFALATL-ISGCFNRM 385


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 354/632 (56%), Gaps = 79/632 (12%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI---------------------------- 48
           A   G++  A++LFDK P PDV  +N ++ C                             
Sbjct: 117 ASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSF 176

Query: 49  --LLNSDDVVAAFDFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPE 98
             +L +   + A +  +R+  +        D    N +++ + +   + +A  +F  + +
Sbjct: 177 PCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVD 236

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFK-----------VAPVKSVVAWT----------- 136
           +  VSW+++ISGY + GQ  +A+ +F            +A V  + A+T           
Sbjct: 237 RTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSI 296

Query: 137 -----------------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                            ++ S Y K G V +A   F+++   +L+ WNAMI+GYV+N +A
Sbjct: 297 HGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYA 356

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E+ ++L R+M    IRP++ +++S +  C+ + SL+L + + + +  S    D    T L
Sbjct: 357 EEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSL 416

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I  Y KCG ++ A  +F  I  KDVV W+AM+ GY  HG+G +++ LF  M+  G+ P+ 
Sbjct: 417 IDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPND 476

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TFV LL AC ++GLV+ G   F  M  DYGI  +  HY C+VDLLGRAG L  A + + 
Sbjct: 477 VTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVM 535

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP +P  +++G LLSAC++H+ + L E+AA  LF+L+P N  G YVQL+N+YA+   WD
Sbjct: 536 NMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNT-GHYVQLSNLYASSCLWD 594

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
            VA++R+ M+E  + K  GYS IE+   +  F++GD+ HP    I E++++LE+R+K AG
Sbjct: 595 CVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAG 654

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           +VP  E  LH +  E  E+ L  HSE+LAIA+GLI  P GT +R+ KNLR C +CH A K
Sbjct: 655 FVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIK 714

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IS +  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 715 LISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 142/335 (42%), Gaps = 52/335 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV-------- 55
           +T V+W S+++G+A Q G+  +A  +F ++ + +V    I L  +L    DV        
Sbjct: 237 RTIVSWTSIISGYA-QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295

Query: 56  ----------VAAFD--------------------FFQRLPIKDTASWNTMISGFVQKKN 85
                        FD                    FF ++       WN MISG+V+   
Sbjct: 296 IHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGY 355

Query: 86  MAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAV---ELFKVAPVKS-VVAWTA 137
             +A +LF  M  KN    S++ ++ I+   + G L+ A    E   ++  ++ V+  T+
Sbjct: 356 AEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTS 415

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G VD+A  +FD +P K++V W+AM+ GY  +    + + L   M   G+ PN
Sbjct: 416 LIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPN 475

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   +L  C +   ++ G  +   +    +         ++ +  + G L+ A    +
Sbjct: 476 DVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVM 535

Query: 258 EIQ-RKDVVTWNAMISGYAQHGK---GEKAL-RLF 287
            +     V  W A++S    H     GE A  RLF
Sbjct: 536 NMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLF 570



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
           +  L++     G++  A KLF +    DV  WNA++  Y++HG    A+ ++ +M+   +
Sbjct: 110 IAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACV 169

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            PD  +F  +L AC+    +++G +     +  +G  +       +V L  + G++V A
Sbjct: 170 SPDGFSFPCVLKACSALPALEMG-RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRA 227


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/621 (37%), Positives = 347/621 (55%), Gaps = 52/621 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILL------ 50
           M  + T +WNS+++ +A   G L DA  LF ++     +PD+V++N +LS   L      
Sbjct: 295 MENRNTSSWNSMISSYAA-LGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 353

Query: 51  ---------------NSDDVVAAFDFFQRLPI----KDTASW-------------NTMIS 78
                          NS  + +       L      K+T  +              ++I 
Sbjct: 354 VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 413

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VA 134
            +V+  ++  A+ +F  M  +N  +W++++SGY   G  + A+ L      + +    V 
Sbjct: 414 MYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 473

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           W  MISGY  +G    A  +  +      T N+V+W A+I+G  +     D LK    M 
Sbjct: 474 WNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQ 533

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G+ PN++S++ +L  C+ LS LQ GK++H L  ++   +D    T LI MY K   L+
Sbjct: 534 QEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 593

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A K+F  IQ K + +WN MI G+A  G G++A+ +F++M+  G+ PD+ITF ALL AC 
Sbjct: 594 NAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACK 653

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           ++GL+  G +YFDSM+ DY I  + +HY CMVDLLGRAG L EA DLI  MP KP   I+
Sbjct: 654 NSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIW 713

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G LL +CR+HK L  AE AA NLF L P N+A  Y+ + N+Y+   +W+D+  +R  M  
Sbjct: 714 GALLGSCRIHKNLKFAETAAKNLFKLEPNNSAN-YILMMNLYSIFNRWEDMDHLRELMGA 772

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             V     +SWI++   VH F S ++ HP+   I+ +L +L   MK  GYVPD+      
Sbjct: 773 AGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQN 832

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           + E  K+++LL H+EKLAI +GLIK+  G PIRV KN R+C DCH A KYIS ++ RE+ 
Sbjct: 833 MDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELF 892

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           +RD  RFHHF++G CSC D+W
Sbjct: 893 LRDGVRFHHFREGKCSCNDFW 913



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 188/387 (48%), Gaps = 31/387 (8%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-- 68
           L  F  +   L+ A ++F ++P P+ + +N     I+LN  S+ +    + F+++     
Sbjct: 174 LMNFYGRCWGLEKANQVFHEMPNPEALLWN---EAIILNLQSEKLQKGVELFRKMQFSFL 230

Query: 69  --DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             +TA+   ++    +   +  A+ +    F    + +    + +IS Y + G+L+ A  
Sbjct: 231 KAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARR 290

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSW 178
           +F     ++  +W +MIS Y   G ++ A  LF E+ + ++    VTWN +++G+  + +
Sbjct: 291 VFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGY 350

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ L +L+ M G G +PN+SS++SVL   S L  L +GK+ H  V ++    D    T 
Sbjct: 351 KEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTS 410

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI MY K   L  A  +F  ++ +++  WN+++SGY+  G  E ALRL ++M+ EG+KPD
Sbjct: 411 LIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD 470

Query: 299 SITFVAL-----LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            +T+  +     +  C    L  L            G+      +T ++    +AG   +
Sbjct: 471 LVTWNGMISGYAMWGCGKEALAVL------HQTKSLGLTPNVVSWTALISGSSQAGNNRD 524

Query: 354 AVDLIKKMPFK---PQPAIFGTLLSAC 377
           ++    +M  +   P  A    LL AC
Sbjct: 525 SLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 22/300 (7%)

Query: 22  KLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           K+  AQ +  K+PQ   PD  + N ++S  L   D   AA  F+  LP ++   WN+ + 
Sbjct: 50  KMMHAQMI--KLPQKWNPDAAAKN-LISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVE 105

Query: 79  GFVQKKNMAKARDLFLAMPEK--------NSVSWSAMISGYIECGQLDKAVE----LFKV 126
            F   K+ A +  + L + ++        +S  +S  +        +   +E    L K 
Sbjct: 106 EF---KSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKR 162

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                V    A+++ Y +   ++ A ++F EMP    + WN  I   +++   + G++L 
Sbjct: 163 GFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELF 222

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R M    ++   +++  VL  C  + +L   KQ+H  VF+  L  D +   PLISMY K 
Sbjct: 223 RKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKN 282

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G LE A ++F  ++ ++  +WN+MIS YA  G    A  LF +++   MKPD +T+  LL
Sbjct: 283 GKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLL 342



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 66/248 (26%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           A+++ Y  C  L+KA                                ++F EMP    + 
Sbjct: 173 ALMNFYGRCWGLEKA-------------------------------NQVFHEMPNPEALL 201

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN  I   +++   + G++L R M    ++   +++  VL  C  + +L   KQ+H  VF
Sbjct: 202 WNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVF 261

Query: 226 KSPLCKDTTALTPLISMYCKCGDLE-------------------------------DACK 254
           +  L  D +   PLISMY K G LE                               DA  
Sbjct: 262 RFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWS 321

Query: 255 LFLEIQ----RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           LF E++    + D+VTWN ++SG+  HG  E+ L +  +M+ EG KP+S +  ++L A +
Sbjct: 322 LFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAIS 381

Query: 311 HAGLVDLG 318
             G +++G
Sbjct: 382 ELGFLNMG 389



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 2/225 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA-EDGLKLLRMMIGLGIRP 196
           +IS Y+ FG    A  +F     +N + WN+ +  +  ++ +    L++ + + G G+  
Sbjct: 72  LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 131

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           ++   S  L  C+ +  + LG ++H  + K     D      L++ Y +C  LE A ++F
Sbjct: 132 DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 191

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E+   + + WN  I    Q  K +K + LF KM+   +K ++ T V +L AC   G ++
Sbjct: 192 HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALN 251

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              Q     V  +G+ +       ++ +  + GKL  A  +   M
Sbjct: 252 AAKQ-IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/511 (43%), Positives = 311/511 (60%), Gaps = 7/511 (1%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
           + +  SW  MISGF+Q     +A  LF  M  K    N  ++S +++        +   +
Sbjct: 363 LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 422

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           + K    +S    TA++  Y+K GKVD A K+F  +  K++V W+AM+AGY +    E  
Sbjct: 423 VVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAA 482

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           +K+   +   G++PN  + SS+L  C+  + S+  GKQ H    KS L       + L++
Sbjct: 483 IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLT 542

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K G +E A ++F   + KD+V+WN+MISGYAQHG+  KAL +F +MK   +K DS+T
Sbjct: 543 MYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+ +  AC HAGLV+ G +YFD MV D  IA   +H +CMVDL  RAG+L +A+ +I  M
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNM 662

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P      I+ T+L+ACRVHK+ +L   AA  +  + P ++A  YV L+N+YA    W + 
Sbjct: 663 PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAA-YVLLSNMYAESGDWQER 721

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           A++R  M E NV K PGYSWIEV    + F +GDR HP    I+ KL++L  R+K  GY 
Sbjct: 722 AKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYE 781

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PD  + L  + +E KE +L  HSE+LAIAFGLI  P G+P+ + KNLRVCGDCH   K I
Sbjct: 782 PDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLI 841

Query: 542 SAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 571
           + IE+REI+VRD+ RFHHF  DG CSCGD+W
Sbjct: 842 AKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 167/353 (47%), Gaps = 58/353 (16%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF---DFFQR 64
           ++ S+L GF++  G+ ++A  LF  I         + + C + +S   V+A    + F R
Sbjct: 64  SYTSLLFGFSRD-GRTQEATRLFLNIQH-----LGMEMDCSIFSSVLKVSATLCDELFGR 117

Query: 65  LP---------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                      + D +   +++  +++  N    R++F  M E+N V+W+ +ISGY    
Sbjct: 118 QLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNS 177

Query: 116 QLDKAVELF--------------------------------KVAPV-------KSVVAWT 136
             ++ + LF                                +V  V       K++    
Sbjct: 178 LNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSN 237

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           ++I+ Y+K G V  A  LFD+   K++VTWN+MI+GY  N    + L +   M    +R 
Sbjct: 238 SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRL 297

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + SS +S++  C++L  L+  +Q+H  V K     D    T L+  Y KC  + DA +LF
Sbjct: 298 SESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLF 357

Query: 257 LEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
            E     +VV+W AMISG+ Q+   E+A+ LF +MK +G++P+  T+  +L A
Sbjct: 358 KETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA 410



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 152/321 (47%), Gaps = 9/321 (2%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWS 105
           +S  +  A + F + P +D  S+ +++ GF +     +A  LFL      M    S+  S
Sbjct: 43  SSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSS 102

Query: 106 AMISGYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            +      C +L       +  K   +  V   T+++  YMK         +FDEM  +N
Sbjct: 103 VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERN 162

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +VTW  +I+GY  NS  E+ L L   M   G +PN+ + ++ L   +       G QVH 
Sbjct: 163 VVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 222

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           +V K+ L K       LI++Y KCG++  A  LF + + K VVTWN+MISGYA +G   +
Sbjct: 223 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 282

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL +F  M+   ++    +F +++  C +   +    Q   S+V  YG     +  T ++
Sbjct: 283 ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVK-YGFVFDQNIRTALM 341

Query: 343 DLLGRAGKLVEAVDLIKKMPF 363
               +   +++A+ L K+  F
Sbjct: 342 VAYSKCMAMLDALRLFKETGF 362



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN- 100
           N+ L C      +V  A   F +  +K   +WN+MISG+       +A  +F +M   + 
Sbjct: 241 NLYLKC-----GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 101 SVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVAW-----TAMISGYMKFGKVDLAEK 153
            +S S+  S    C  L   +  E    + VK    +     TA++  Y K   +  A +
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 154 LFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           LF E     N+V+W AMI+G+++N   E+ + L   M   G+RPN  + S +L     +S
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS 415

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
                 +VH  V K+   + +T  T L+  Y K G +++A K+F  I  KD+V W+AM++
Sbjct: 416 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLA 471

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           GYAQ G+ E A+++F ++   G+KP+  TF ++L  C
Sbjct: 472 GYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVC 508



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 1/215 (0%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A  LFD+ P ++  ++ +++ G+  +   ++  +L   +  LG+  + S  SSVL   + 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L     G+Q+H    K     D +  T L+  Y K  + +D   +F E++ ++VVTW  +
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ISGYA++   E+ L LF +M+DEG +P+S TF A L      G+   G+Q    +V + G
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-G 228

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           +         +++L  + G + +A  L  K   K 
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS 263



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 147/362 (40%), Gaps = 104/362 (28%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-------------- 49
           K  V W+++LAG+A Q G+ + A ++F ++ +  V       S IL              
Sbjct: 461 KDIVAWSAMLAGYA-QAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGK 519

Query: 50  ----------LNSD---------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                     L+S                 + +A + F+R   KD  SWN+MISG+ Q  
Sbjct: 520 QFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHG 579

Query: 85  NMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF-------KVAPVKSVV 133
              KA D+F  M ++    +SV++  + +     G +++  + F       K+AP K   
Sbjct: 580 QAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE-- 637

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             + M+  Y + G+++ A K+ D MP          +AG                     
Sbjct: 638 HNSCMVDLYSRAGQLEKAMKVIDNMPN---------LAG--------------------- 667

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
               ++   ++L  C      +LG+   + +  + + +D+ A   L +MY + GD ++  
Sbjct: 668 ----STIWRTILAACRVHKKTELGRLAAEKII-AMIPEDSAAYVLLSNMYAESGDWQERA 722

Query: 254 KLFLEIQRKDV-----VTW-------NAMISGYAQHG-KGEKALRLFD---KMKDEGMKP 297
           K+   +  ++V      +W        A ++G   H  K +  ++L D   ++KD G +P
Sbjct: 723 KVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 782

Query: 298 DS 299
           D+
Sbjct: 783 DT 784


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/565 (39%), Positives = 348/565 (61%), Gaps = 17/565 (3%)

Query: 16  FAKQRGKLK-DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN 74
           F ++ G+ +  A E+FD++ +    + ++    +L  S+D V     F+ +P KD  SWN
Sbjct: 156 FLEESGRQRLGAGEVFDEMTER---TRSVRTVSVL--SEDSVR--KIFEMMPEKDLVSWN 208

Query: 75  TMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           T+I+G  +    ++ +   R++  A  + +S + S+++    E   + +  E+   +  +
Sbjct: 209 TIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ 268

Query: 131 SVVA----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            + A     +++I  Y K  +V  + ++F  +  ++ ++WN++IAG V+N   ++GL+  
Sbjct: 269 GLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFF 328

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R M+   I+P + S SS++  C+HL++L LGKQ+H  + ++   ++    + L+ MY KC
Sbjct: 329 RQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKC 388

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++  A ++F  ++ +D+V+W AMI G A HG+   A+ LF++M+ EG+KP+ + F+A+L
Sbjct: 389 GNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVL 448

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD   +YF+SM  D+GIA   +HY  + DLLGRAG+L EA D I  M   P 
Sbjct: 449 TACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPT 508

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            +I+ TLLSACRVH  +D+AE  A  +  ++P N  G Y+ LANIY+A ++W + A+ R 
Sbjct: 509 GSIWATLLSACRVHXNIDMAEKVANRILEVDP-NNTGAYILLANIYSAARRWKEAAKWRA 567

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           SM+   + K P  SWIEV   V+ F +GD  HP    I E ++ L + M+  GYVPD   
Sbjct: 568 SMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSE 627

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
             H V EE K+ L+  HSE+LAI FG+I  P G  IRV KNLRVC DCH ATK+IS I  
Sbjct: 628 VHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVG 687

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI+VRD +RFHHFK+GTCSCGDYW
Sbjct: 688 REIVVRDNSRFHHFKNGTCSCGDYW 712



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 47/256 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---- 53
           M  K  V+WN+++AG A+       L+  +E+     +PD  + + +L  I  N D    
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG 258

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +      Q L   D    +++I  + +   +A +  +F  + E++ +SW+++I+G ++
Sbjct: 259 KEIHGCSIRQGLD-ADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQ 317

Query: 114 CGQLDKAVELFK---VAPVK------------------------------------SVVA 134
            G  D+ +  F+   +A +K                                    ++  
Sbjct: 318 NGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 377

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            ++++  Y K G +  A+++FD M  +++V+W AMI G   +  A D ++L   M   GI
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI 437

Query: 195 RPNASSLSSVLLGCSH 210
           +PN  +  +VL  CSH
Sbjct: 438 KPNHVAFMAVLTACSH 453



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 136/346 (39%), Gaps = 75/346 (21%)

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           +LF+ +     + W ++I  Y  +      L     M+  G+ P+ +   SVL  C+ L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC------------------- 253
            L LG+ +H  + +  L  D      L++MY K   LE++                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 254 -------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
                        K+F  +  KD+V+WN +I+G A++G  E+ LR+  +M    +KPDS 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 301 TFVALL---------------LACNHAGLVDLGIQYFDSMVNDYG----IAAKPDHYTCM 341
           T  ++L                 C+    +D  I    S+++ Y     +A     +T +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 342 VDLLG-----------RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC----RVHKRL 383
            +  G           + G   E +   ++M     KP+   F +++ AC     +H   
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 384 DLAEFAAMNLFNLN---PANAAGCYVQLANIYAAMKKWDDVARIRL 426
            L  +   N F+ N    ++    Y +  NI  A + +D   R+RL
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD---RMRL 403



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y     L D+ +LF  I     + W ++I  Y  HG   ++L  F  M   G+ PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 302 FVALLLACNHAGLVDLGI 319
           F ++L +C  A L+DL +
Sbjct: 109 FPSVLKSC--ALLMDLNL 124


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/534 (41%), Positives = 316/534 (59%), Gaps = 39/534 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVA 127
           N +I+ +V+   +  A  LF  MP++N +SW+ MIS Y +C    KA+EL        V 
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 128 P------------------------------VKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           P                                 V   +A+I  + K G+ + A  +FDE
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M T + + WN++I G+ +NS ++  L+L + M   G     ++L+SVL  C+ L+ L+LG
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            Q H  + K    +D      L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ+
Sbjct: 280 MQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  ++AL+LF++MK  G KP+ IT V +L AC+HAGL++ G  YF SM   YGI    +H
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CM+DLLG+AGKL +AV L+ +M  +P    + TLL ACRV + + LAE+AA  +  L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P +A G Y  L+NIYA  +KWD V  IR  M++  + K PG SWIEV   +H F  GD  
Sbjct: 458 PEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNS 516

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP++V + +KL +L  R+   GYVP+  F L  +  E  E  L  HSEKLA+AFGL+ +P
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLP 576

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +   IR+ KNLR+CGDCH   K  S +E R I++RD  R+HHF+DG CSCGDYW
Sbjct: 577 IEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 47/269 (17%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTA 71
           FAK  G+ +DA  +FD++   D + +N ++     NS   V A + F+R+     I + A
Sbjct: 204 FAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGFIAEQA 261

Query: 72  SWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +  +++          +     + +   +++ +  +A++  Y +CG L+ A+ +F     
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           + V+ W+ MISG                                 +N ++++ LKL   M
Sbjct: 322 RDVITWSTMISG-------------------------------LAQNGYSQEALKLFERM 350

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCK 245
              G +PN  ++  VL  CSH   L+ G    + + +L    P+ +    +  L+    K
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLG---K 407

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISG 273
            G L+DA KL  E++   D VTW  ++  
Sbjct: 408 AGKLDDAVKLLNEMECEPDAVTWRTLLGA 436



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 51/212 (24%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------------- 49
           WNS++ GFA Q  +   A ELF ++ +   ++    L+ +L                   
Sbjct: 228 WNSIIGGFA-QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 50  --------LNS---------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
                   LN+           +  A   F ++  +D  +W+TMISG  Q     +A  L
Sbjct: 287 VKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 346

Query: 93  FLAMPEKNS---------VSWSAMISGYIECG--QLDKAVELFKVAPVKSVVAWTAMISG 141
           F  M    +         V ++   +G +E G        +L+ + PV+    +  MI  
Sbjct: 347 FERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDL 404

Query: 142 YMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
             K GK+D A KL +EM  + + VTW  ++  
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/545 (40%), Positives = 330/545 (60%), Gaps = 9/545 (1%)

Query: 35  QPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARD 91
           +PD ++Y  +L  +  L +++  +A      R  I+ D+    +++  +V+ + +  A  
Sbjct: 176 KPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFK 235

Query: 92  LFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
           +F   PE+     +++ W+ +I G  + G + KAV+LFK  P K  V+W+ +I G+ K G
Sbjct: 236 VFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNG 295

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            +D A +LFD+MP KN+V+W  M+ G+  N  +E  L +   M+  G+RPNA ++ S L 
Sbjct: 296 DMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALS 355

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+ +  L+ G ++H+ +  + L       T L+ MY KCG++E A ++F E ++K + T
Sbjct: 356 ACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRT 415

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W  MI G+A HG  E+A+  F +M   G+KPD + F+ALL AC H+G VD+G+ +FDSM 
Sbjct: 416 WTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMR 475

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
            DY I     HYT +VD+LGR+G+L EA+  I++MP  P   I+G L  ACR HK+  +A
Sbjct: 476 LDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMA 535

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           +FA   L  L P +  G Y+ L+N YAA+ +W+D  R+R+ M+   V K  G+S IEV  
Sbjct: 536 KFALNKLLKLEPTH-TGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEG 594

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            VH F SGD  H +  +I  KL+E+       GY+P  E+ LH + +E KE +L  H EK
Sbjct: 595 QVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEK 654

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LA+AF LI    G  IR+ KNL+VCGDCH   KY S I +REI++RD  RFHHFKDG+CS
Sbjct: 655 LALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCS 714

Query: 567 CGDYW 571
           C D+W
Sbjct: 715 CRDHW 719



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 135/293 (46%), Gaps = 14/293 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           WN ++ G  K  G +K A +LF  +P+ + VS++ ++     N  D+  A + F ++P K
Sbjct: 253 WNVLIKGCCKA-GSMKKAVKLFKAMPKKENVSWSTLIDGFAKNG-DMDRAMELFDQMPEK 310

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF 124
           +  SW TM+ GF +  +  KA  +F  M E+    N+ +  + +S   + G L+  + + 
Sbjct: 311 NVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIH 370

Query: 125 KVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           K      +       TA++  Y K G ++ A ++F E   K++ TW  MI G+  +  +E
Sbjct: 371 KYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSE 430

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA--LTP 238
             +   + M+  GI+P+     ++L  C H   + +G        +   C + +    T 
Sbjct: 431 QAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFD-SMRLDYCIEPSMKHYTL 489

Query: 239 LISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           ++ M  + G L++A +    +    D V W A+      H K + A    +K+
Sbjct: 490 IVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKL 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/435 (21%), Positives = 170/435 (39%), Gaps = 111/435 (25%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG---YIECGQLDKAV 121
           +P  +     T IS   + K  +    LF+         + ++I G    ++  Q+   +
Sbjct: 45  IPSPNPPEITTTISKTSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQI 104

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            +  ++   S +  T +IS       ++ +  +F+    KNL T+NA+I G   NS   +
Sbjct: 105 IIHNLS--SSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFN 162

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            +   R+M+  GI+P+  +   VL   + L S +LG  +H ++ +  +  D+     L+ 
Sbjct: 163 AIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVD 222

Query: 242 MY------------------------------------CKCGDLEDACKLFLEIQRKD-- 263
           MY                                    CK G ++ A KLF  + +K+  
Sbjct: 223 MYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENV 282

Query: 264 -----------------------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
                                        VV+W  M+ G++++G  EKAL +F KM +EG
Sbjct: 283 SWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEG 342

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL--- 351
           ++P++ T V+ L AC   G ++ G++     + D G+       T +VD+  + G +   
Sbjct: 343 VRPNAFTIVSALSACAKIGGLEAGLR-IHKYIKDNGLHLTEALGTALVDMYAKCGNIESA 401

Query: 352 ----------------------------VEAVDLIKKMPF---KPQPAIFGTLLSACRVH 380
                                        +A+   K+M F   KP   +F  LL+AC   
Sbjct: 402 SEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHS 461

Query: 381 KRLDLAEFAAMNLFN 395
            ++D+     +N F+
Sbjct: 462 GQVDI----GLNFFD 472


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/549 (41%), Positives = 322/549 (58%), Gaps = 41/549 (7%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  L  ++T  +NT++ G +    +  A  LF  M EK+SVSWSAMI G  + G   +A+
Sbjct: 194 FYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAI 252

Query: 122 ELFKVAPVKS---------------------------------------VVAWTAMISGY 142
           E F+   ++                                        +   +A+I  Y
Sbjct: 253 ECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMY 312

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K   +  A+ +FD M  KN+V+W AM+ GY +   A + +K+   M   GI P+  +L 
Sbjct: 313 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLG 372

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
             +  C+++SSL+ G Q H     + L    T    L+++Y KCGD++D+ +LF E+  +
Sbjct: 373 QAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVR 432

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D V+W AM+S YAQ G+  +A++LFDKM   G+KPD +T   ++ AC+ AGLV+ G +YF
Sbjct: 433 DEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYF 492

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           + M+N+YGI     HY+CM+DL  R+G++ EA+  I  MPF+P    + TLLSACR    
Sbjct: 493 ELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGN 552

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           L++ ++AA +L  L+P + AG Y  L++IYA+  KWD VA++R  MKE NV K PG SWI
Sbjct: 553 LEIGKWAAESLIELDPHHPAG-YTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWI 611

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           +    +H F + D   P    I+ KL+EL +++   GY PD  F  H V E VK ++L  
Sbjct: 612 KWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNC 671

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSE+LAIAFGLI VP G PIRV KNLRVC DCH ATK+IS++  REI+VRD  RFH FKD
Sbjct: 672 HSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 731

Query: 563 GTCSCGDYW 571
           GTCSCGD+W
Sbjct: 732 GTCSCGDFW 740



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 200/471 (42%), Gaps = 85/471 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  +A  R  +  A+ +FD IPQP++ S+N +L      S  +      F++LP +D
Sbjct: 42  NNIVHAYALIRSSIY-ARRVFDGIPQPNLFSWNNLL-LAYSKSGHLSEMERTFEKLPDRD 99

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM--------------------PEKNSVSWSAMIS 109
             +WN +I G+     +  A   +  M                         VS    I 
Sbjct: 100 GVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIH 159

Query: 110 G--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
           G                    Y + G +  A ++F     ++ V +  ++ G +  G ++
Sbjct: 160 GQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIE 219

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A +LF  M  K+ V+W+AMI G  +N   ++ ++  R M   G++ +     SVL  C 
Sbjct: 220 DALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACG 278

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L ++  G+Q+H  + ++ L       + LI MYCKC  L  A  +F  +++K+VV+W A
Sbjct: 279 GLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 338

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 322
           M+ GY Q G+  +A+++F  M+  G+ PD  T    + AC +   ++ G Q+        
Sbjct: 339 MVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAG 398

Query: 323 --------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIK 359
                   +S+V  YG     D                +T MV    + G+ VEA+ L  
Sbjct: 399 LIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFD 458

Query: 360 KM---PFKPQPAIFGTLLSACRVHKRLDLAE-----FAAM-NLFNLNPANA 401
           KM     KP       ++SAC    R  L E     F  M N + + P+N 
Sbjct: 459 KMVQLGLKPDGVTLTGVISAC---SRAGLVEKGQRYFELMINEYGIVPSNG 506



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 153/356 (42%), Gaps = 43/356 (12%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +  + LP  +T   N ++  +   ++   AR +F  +P+ N  SW+ ++  Y + G L +
Sbjct: 28  NIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSE 87

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP---TKNL--VTWNAMIAGYV 174
               F+  P +  V W  +I GY   G V  A K ++ M    + NL  VT   M+    
Sbjct: 88  MERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSS 147

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            N     G ++   +I LG        S +L   S +  +   K+    VF     ++T 
Sbjct: 148 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKK----VFYGLDDRNTV 203

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               L+     CG +EDA +LF  ++ KD V+W+AMI G AQ+G  ++A+  F +MK EG
Sbjct: 204 MYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEG 262

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQ--------------YFDSMVNDYGIAAKPDHY-- 338
           +K D   F ++L AC   G ++ G Q              Y  S + D     K  HY  
Sbjct: 263 LKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAK 322

Query: 339 --------------TCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
                         T MV   G+ G+  EAV +   +++    P     G  +SAC
Sbjct: 323 TVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISAC 378



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 17/177 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           MNV+  V+W ++++ +A Q G+  +A +LFDK+ Q    PD V+   ++S     +  V 
Sbjct: 429 MNVRDEVSWTAMVSAYA-QFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISAC-SRAGLVE 486

Query: 57  AAFDFFQRL-----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISG 110
               +F+ +      +     ++ MI  F +   + +A      MP + +++ W+ ++S 
Sbjct: 487 KGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA 546

Query: 111 YIECGQLD----KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
               G L+     A  L ++ P      +T + S Y   GK D   +L   M  KN+
Sbjct: 547 CRNKGNLEIGKWAAESLIELDP-HHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNV 602



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C  L + +  K +H  + ++    +T     ++  Y        A ++F  I + ++ +W
Sbjct: 13  CIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSW 72

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           N ++  Y++ G   +  R F+K+ D     D +T+  L+   + +GLV   ++ +++M+ 
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMK 128

Query: 328 DY 329
           D+
Sbjct: 129 DF 130


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/609 (38%), Positives = 338/609 (55%), Gaps = 41/609 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  ++WNS+L G  K  G L  A  +FDK+ + +VVS+  +++  LL    V  A  
Sbjct: 107 MPVKDLISWNSMLKGCLKC-GDLTMACNMFDKMSERNVVSWTTIING-LLEFGRVEVAEC 164

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ---- 116
            F+ +P KD  +WN+M+ GF     +  A +LF  MP +N +SW+++I G    G+    
Sbjct: 165 LFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEA 224

Query: 117 ---LDKAVELFKVAPVKSVVAWTA-------------------------------MISGY 142
                K +  FK        A TA                               +IS Y
Sbjct: 225 LVVFHKMLASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFY 284

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
                +D A  +F++  ++N+V W A++ GY  N    D L++ + M+ + + PN SSL+
Sbjct: 285 ANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLT 344

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S L  C  L ++  G++VH +  K  L  D      L+ MY KCG + D   +F  + RK
Sbjct: 345 SALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRK 404

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +VV+WN++I G AQHG G  AL LF +M    + PD IT   LL AC H+G++  G  +F
Sbjct: 405 NVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFF 464

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
                ++GI    +HY+ MVDLLGR G+L EA  LI  MP K    ++  LLS+   H  
Sbjct: 465 KHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSN 524

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           + +AE AA  + +L P N +  Y  L+N+YA+  KW +V++IR  MK+  ++K PG SWI
Sbjct: 525 VHVAERAAKCVLDLQP-NCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWI 583

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
            +  + H F SGD+ HP    I++KL+ L  ++K  GYVPD +F+ H V  E KE++L +
Sbjct: 584 TIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSY 643

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSE+LAI FGLI    G+ I V KNLR+CGDCH A K  S +  REI+VRD +RFHHF +
Sbjct: 644 HSERLAIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHN 703

Query: 563 GTCSCGDYW 571
           GTCSCGDYW
Sbjct: 704 GTCSCGDYW 712



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 213/400 (53%), Gaps = 7/400 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +++ TT   N +L+ F  + G++ +A+ LF+K+  P V  Y +M+     +   +  A  
Sbjct: 45  LSILTTPPSNYLLS-FHLRNGRIDEARSLFNKMSSPGVNLYTMMIGG-YADEGRLEDALK 102

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P+KD  SWN+M+ G ++  ++  A ++F  M E+N VSW+ +I+G +E G+++ A
Sbjct: 103 LFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVA 162

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF+V P K V AW +M+ G+   G+V+ A +LF++MP +N+++W ++I G   N  + 
Sbjct: 163 ECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSF 222

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L +   M+    +  +S+L+  L  C+++ +  +G Q+H L+ K+  C +      LI
Sbjct: 223 EALVVFHKMLA-SFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLI 281

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           S Y  C  +++A  +F +   ++VV W A+++GY  + +   AL++F  M    + P+  
Sbjct: 282 SFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQS 341

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           +  + L +C     VD G +   ++ +  G+ +       +V +  + G + + + +  +
Sbjct: 342 SLTSALNSCCGLEAVDRG-REVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTR 400

Query: 361 MPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
           M  K   + + +++  C  H   R  L  FA M    ++P
Sbjct: 401 MSRKNVVS-WNSIIVGCAQHGFGRWALTLFAQMIRTRVDP 439


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/569 (40%), Positives = 336/569 (59%), Gaps = 24/569 (4%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DAQ++ DK    DVVSY  +++    +   + +A   F  +P+KD  SWN  IS
Sbjct: 150 QNGRLEDAQKVXDKSSHRDVVSYTALITG-YASRGXIESAHKMFDEIPVKDVVSWNAXIS 208

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW-- 135
           G+ +  N  +A +LF  M + N     S M++    C Q   ++EL +      V +W  
Sbjct: 209 GYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQ-SGSIELGR-----QVHSWIN 262

Query: 136 -----------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                       A+I  Y K G+++ A  LF  +  K++++WN +I GY   +  ++ L 
Sbjct: 263 DHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALL 322

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISM 242
           L + M+  G +PN  ++ S+L  C+HL ++ +G+ +H  + K    +   ++  T LI M
Sbjct: 323 LFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 382

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCGD+E A ++F  +  + + +WNAMI G+A HG+   A  +F +M+  G++PD ITF
Sbjct: 383 YAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITF 442

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V LL AC+H+G++DLG   F SM  DY +  K +HY CM+DL G +G   EA  +I  M 
Sbjct: 443 VGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTME 502

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA  ++W++VA
Sbjct: 503 MEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENP-GSYVLLSNIYATAERWNEVA 561

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           + R  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VP
Sbjct: 562 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           D    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS
Sbjct: 622 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 681

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I KREII RD TRFHHF+DG CSC DYW
Sbjct: 682 KIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 205/445 (46%), Gaps = 78/445 (17%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-----------------AFDFFQRLPIK 68
           A  +FD I +P ++ +N M     L+SD V A                  F F  +   K
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 69  DTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
             A      + G V K       DL++          +++IS Y++ G+L+ A ++   +
Sbjct: 116 SXAFKEGQQLHGQVLK--FGFDLDLYIH---------TSLISMYVQNGRLEDAQKVXDKS 164

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             + VV++TA+I+GY   G ++ A K+FDE+P K++V+WNA I+GY E    ++ L+L +
Sbjct: 165 SHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFK 224

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+   +RP+ S++ +VL  C+   S++LG+QVH  +       +   +  LI +Y KCG
Sbjct: 225 KMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCG 284

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           +LE AC LF  +  KDV++WN +I GY      ++AL LF  M   G KP+ +T +++L 
Sbjct: 285 ELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILS 344

Query: 308 ACNHAGLVDLG-------------------------------------IQYFDSMVNDYG 330
           AC H G +D+G                                      Q FDSM+N   
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLN--- 401

Query: 331 IAAKPDHYTCMV---DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
                  +  M+    + GRA    +    ++K   +P    F  LLSAC     LDL  
Sbjct: 402 --RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 388 --FAAMNL-FNLNPA-NAAGCYVQL 408
             F +M   + L P     GC + L
Sbjct: 460 HIFRSMTRDYKLMPKLEHYGCMIDL 484



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +FD +    L+ WN M  G+  +S     LKL   M+ LG+ PN+ +   +
Sbjct: 50  FDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFL 109

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K+  +   +DV
Sbjct: 110 LKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169

Query: 265 VTWNAM-------------------------------ISGYAQHGKGEKALRLFDKMKDE 293
           V++ A+                               ISGYA+ G  ++AL LF KM   
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V +L AC  +G ++LG Q   S +ND+G          ++DL  + G+L  
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 354 AVDLIKKMPFK 364
           A  L + +  K
Sbjct: 289 ACGLFQGLSNK 299



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 161/372 (43%), Gaps = 82/372 (22%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCI---------- 48
           VK  V+WN+ ++G+A + G  K+A ELF K+     +PD  +   +LS            
Sbjct: 197 VKDVVSWNAXISGYA-ETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGR 255

Query: 49  ----------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQ-- 82
                           ++N+         ++  A   FQ L  KD  SWNT+I G+    
Sbjct: 256 QVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMN 315

Query: 83  --KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
             K+ +   +D+  +  + N V+  +++S     G +D  + + ++    +K V      
Sbjct: 316 LYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 375

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A+++FD M  ++L +WNAMI G+  +  A     +   M   GI
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGI 435

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH   L LG+     +F+S + +D   L P +  Y    DL     
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRH----IFRS-MTRD-YKLMPKLEHYGCMIDLXGHSG 489

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF E                        A ++ + M+   M+PD + + +LL AC   G 
Sbjct: 490 LFKE------------------------AEKMINTME---MEPDGVIWCSLLKACKMHGN 522

Query: 315 VDLGIQYFDSMV 326
           V+LG  Y  +++
Sbjct: 523 VELGESYAQNLI 534


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/570 (38%), Positives = 343/570 (60%), Gaps = 22/570 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           S L     + G  K+A+ +F+ +   + V++ +++S   L       + + F ++  +  
Sbjct: 309 SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG-FLQYGCFTESVELFNQMRAELM 367

Query: 69  --DTASWNTMISGFVQKKNMAKARDLF---LAMPEKNSVSWS-AMISGYIECGQLDKAVE 122
             D  +  T+ISG   + ++   R L    L   +  +V  S ++IS Y +C  L  A  
Sbjct: 368 TLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEA 427

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F+    K +V+WT+MI+ Y + G V  A + FD M  KN++TWNAM+  Y+++   EDG
Sbjct: 428 IFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDG 487

Query: 183 LKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           L++ ++M+    +RP+  +  ++  GC+ L + +LG Q+     K  L  DT+    +I+
Sbjct: 488 LRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVIT 547

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG + +A K+F  +  KD+V+WNAMI+GY+QHG G++A+ +FD +   G KPD I+
Sbjct: 548 MYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYIS 607

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +VA+L  C+H+GLV  G  YFD M   + I+   +H++CMVDLLGRAG L EA DLI  M
Sbjct: 608 YVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDM 667

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P KP   ++G LLSAC++H   +LAE AA ++F L+  + +G Y+ +A IYA   K DD 
Sbjct: 668 PMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDS 726

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           A+IR  M++  + K PGYSW+EV   VH F++ D  HP++++I +KL EL +++   GYV
Sbjct: 727 AQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV 786

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
                      +  + +  + HSEKLA+AFGL+ +P   PI + KNLR+CGDCH   K I
Sbjct: 787 RT---------DSTRSE--IHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLI 835

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  RE ++RD  RFHHF  G+CSCGDYW
Sbjct: 836 STVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 44/331 (13%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I  P+V+++N+ML+        +  A + F R+P +D ASWNT++SG
Sbjct: 53  GALSDARRLLLMDIAHPNVITHNVMLNG-YAKLGRLSDAVELFGRMPARDVASWNTLMSG 111

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----------------------------------- 104
           + Q +    + + FL+M  ++  SW                                   
Sbjct: 112 YFQSRQYLVSLETFLSM-HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQ 170

Query: 105 ------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
                 +A++  ++ CG +D A  LF      ++    +M++GY+K   VD A +LFD M
Sbjct: 171 DDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSM 230

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P +++V+WN M++   ++    + L ++  M   G+R ++++ +S L  C+ LSSL+ GK
Sbjct: 231 PERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGK 290

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  V ++    D    + L+ +Y K G  ++A  +F  +  ++ V W  +ISG+ Q+G
Sbjct: 291 QLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYG 350

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
              +++ LF++M+ E M  D      L+  C
Sbjct: 351 CFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 128/283 (45%), Gaps = 34/283 (12%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           + ++  Y+ CG L  A  L  +     +V+    M++GY K G++  A +LF  MP +++
Sbjct: 43  NTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDV 102

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            +WN +++GY ++      L+    M   G   PNA +L+  +  C  L    L  Q+  
Sbjct: 103 ASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA 162

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--------------------- 261
           +V K     D+     L+ M+ +CG ++ A +LF+ I+                      
Sbjct: 163 MVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDH 222

Query: 262 ----------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
                     +DVV+WN M+S  +Q G+  +AL +   M+ +G++ DS T+ + L AC  
Sbjct: 223 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 282

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              +  G Q    ++ +      P   + +V+L  ++G   EA
Sbjct: 283 LSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKEA 324



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 46/210 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVV 56
           +NVK  V+WN+++ G++ Q G  K A E+FD I     +PD +SY  +LS          
Sbjct: 565 LNVKDIVSWNAMITGYS-QHGMGKQAIEIFDDILKRGAKPDYISYVAVLS---------- 613

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGY 111
                                SG VQ     + +  F  M   +++S     +S M+   
Sbjct: 614 -----------------GCSHSGLVQ-----EGKFYFDMMKRAHNISPGLEHFSCMVDLL 651

Query: 112 IECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAE---KLFDEMPTKNLVTWN 167
              G L +A +L    P+K +   W A++S     G  +LAE   K   E+ + +  ++ 
Sbjct: 652 GRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 711

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            M   Y +   ++D  ++ ++M   GI+ N
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKN 741


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/569 (39%), Positives = 344/569 (60%), Gaps = 20/569 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQ-RLPI 67
           S L     + G  K+A+ +F+ +   + V++ ++++  L +    + V  F+  +  L  
Sbjct: 309 SALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMT 368

Query: 68  KDTASWNTMISGFVQKKNMAKARDLF---LAMPEKNSVSWS-AMISGYIECGQLDKAVEL 123
            D  +  T+ISG   + ++   R L    L   +  +V  S ++IS Y +C  L  A  +
Sbjct: 369 LDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESI 428

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F+    K +V+WT+MI+ + + G +  A + FD M TKN++TWNAM+  Y+++   EDGL
Sbjct: 429 FRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGL 488

Query: 184 KLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           ++  +M+    +RP+  +  ++  GC+ L + +LG Q+     K  L  DT+    +I+M
Sbjct: 489 RMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITM 548

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG + +A K+F  +  KD+V+WNAMI+GY+QHG G++A+ +FD +   G KPD I++
Sbjct: 549 YSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISY 608

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           VA+L  C+H+GLV  G  YFD M   + I+   +H++CMVDLLGRAG L EA DLI +MP
Sbjct: 609 VAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMP 668

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            KP   ++G LLSAC++H   +LAE AA ++F L+  + +G Y+ +A IYA   K DD A
Sbjct: 669 MKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSA 727

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           +IR  M++  + K PGYSW+EV   VH F++ D  HP++++I +KL EL +++   GYV 
Sbjct: 728 QIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYV- 786

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
                          +  + HSEKLA+AFGL+ +P   PI + KNLR+CGDCH   K IS
Sbjct: 787 ----------RTDSPRSEIHHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLIS 836

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++  RE ++RD  RFHHF  G+CSCGDYW
Sbjct: 837 SVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 165/330 (50%), Gaps = 42/330 (12%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I  P+V+++N+ML+   +    +  A + F R+P +D ASWNT++SG
Sbjct: 53  GALPDARRLLLTDIAHPNVITHNVMLNG-YVKLGRLSDAVELFGRMPARDVASWNTLMSG 111

Query: 80  FVQKKNMAKARDLFLAM----------------------------------------PEK 99
           + Q +    + + F++M                                         + 
Sbjct: 112 YFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQD 171

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +S   +A++  ++ CG +D A  LF      ++    +M+ GY+K   VD A +LFD MP
Sbjct: 172 DSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMP 231

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++V+WN M++   ++    + L ++  M   G+R ++++ +S L  C+ LSSL+ GKQ
Sbjct: 232 ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQ 291

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V ++  C D    + L+ +Y KCG  ++A  +F  +  ++ V W  +I+G+ QHG 
Sbjct: 292 LHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGC 351

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             +++ LF++M+ E M  D      L+  C
Sbjct: 352 FTESVELFNQMRAELMTLDQFALATLISGC 381



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 34/283 (12%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           + ++  Y+ CG L  A  L        +V+    M++GY+K G++  A +LF  MP +++
Sbjct: 43  NTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDV 102

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            +WN +++GY ++      L+    M   G   PNA + +  +  C  L    L  Q+  
Sbjct: 103 ASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG 162

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--------------------- 261
           +V K     D+     L+ M+ +CG ++ A +LF+ I+                      
Sbjct: 163 MVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDH 222

Query: 262 ----------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
                     +DVV+WN M+S  +Q G+  +AL +   M+ +G++ DS T+ + L AC  
Sbjct: 223 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 282

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              +  G Q    ++ +      P   + +V+L  + G   EA
Sbjct: 283 LSSLRWGKQLHAQVIRNLP-CIDPYVASALVELYAKCGCFKEA 324



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 46/210 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVV 56
           +NVK  V+WN+++ G++ Q G  K A E+FD I     +PD +SY  +LS          
Sbjct: 565 LNVKDIVSWNAMITGYS-QHGMGKQAIEIFDDILKRGAKPDYISYVAVLS---------- 613

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGY 111
                                SG VQ     + +  F  M   +++S     +S M+   
Sbjct: 614 -----------------GCSHSGLVQ-----EGKSYFDMMKRVHNISPGLEHFSCMVDLL 651

Query: 112 IECGQLDKAVELFKVAPVKSVV-AWTAMISGYMKFGKVDLAE---KLFDEMPTKNLVTWN 167
              G L +A +L    P+K     W A++S     G  +LAE   K   E+ + +  ++ 
Sbjct: 652 GRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 711

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            M   Y +   ++D  ++ ++M   GI+ N
Sbjct: 712 LMAKIYADAGKSDDSAQIRKLMRDKGIKKN 741


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 340/559 (60%), Gaps = 20/559 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQ-RLPIKDTASWNTMI 77
           G  K+A+ +F  +   + VS+ +++   L      + V  F+  +  L   D  +  T+I
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI 399

Query: 78  SGFVQKKNM---AKARDLFLAMPEKNSVSWS-AMISGYIECGQLDKAVELFKVAPVKSVV 133
           SG     ++   ++   L L      +V  S ++IS Y +CG L  A  +F     + +V
Sbjct: 400 SGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIV 459

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGL 192
           +WT MI+ Y + G +  A + FD+M T+N++TWNAM+  Y+++   EDGLK+   M+   
Sbjct: 460 SWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            + P+  +  ++  GC+ + + +LG Q+     K  L  DT+ +  +I+MY KCG + +A
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEA 579

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K F  + RKD+V+WNAMI+GY+QHG G++A+ +FD + ++G KPD I++VA+L  C+H+
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G  YFD M  D+ I+   +H++CMVDLLGRAG L+EA +LI +MP KP   ++G 
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSAC+ H   DLAE AA +LF+L+   + G Y+ LA +YA   K DD A++R  M++  
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDLDSPGSGG-YMLLAKMYADAGKSDDSAQVRKLMRDKG 758

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PGYSW+EV   VH F++ D  HP++++I EKL EL +++   GYV           
Sbjct: 759 IKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRT--------- 809

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           E  + +  + HSEKLA+AFG++ +P   PI + KNLR+C DCH   K IS +  RE ++R
Sbjct: 810 ESPRSE--IHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIR 867

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHFK G+CSC DYW
Sbjct: 868 DGVRFHHFKGGSCSCMDYW 886



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 174/341 (51%), Gaps = 42/341 (12%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L  D+I +P+V+++NIM++        +  A + F R+P +D ASWNT++SG
Sbjct: 74  GALSDARNLLRDEITEPNVITHNIMMNG-YAKLGSLSDAVELFGRMPTRDVASWNTIMSG 132

Query: 80  FVQKKNMAKARDLFLAMPEKN-----------------SVSW------------------ 104
           + Q      A D+F++M +                   ++ W                  
Sbjct: 133 YYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQD 192

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                +A++   + CG +D A + F      +++   +M+ GY K   VD A ++F  MP
Sbjct: 193 DPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMP 252

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++V+WN +I+   ++    + L ++  M G G+RP++++ +S L  C+ LSSL+ GKQ
Sbjct: 253 ERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQ 312

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V ++    D    + ++ +Y KCG  ++A ++F  ++ ++ V+W  +I G+ Q+G 
Sbjct: 313 LHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGC 372

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             +++ LF++M+ E M  D      L+  C +   + LG Q
Sbjct: 373 FSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ 413



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 168/374 (44%), Gaps = 42/374 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A + F +I  P ++  N ML      S  V  A + F+ +P +D  SWN +IS  
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVG-YAKSHGVDHALEIFKSMPERDVVSWNMVISAL 266

Query: 81  VQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSV 132
            +   + +A D+ + M  K    +S ++++ ++       L+      V++ +  P    
Sbjct: 267 SKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDP 326

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              +AM+  Y K G    A+++F  +  +N V+W  +I G+++     + ++L   M   
Sbjct: 327 YVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED- 251
            +  +  +L++++ GC +   + LG Q+H L  KS   +       LISMY KCG+L++ 
Sbjct: 387 LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA 446

Query: 252 ------------------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
                                         A + F ++  ++V+TWNAM+  Y QHG  E
Sbjct: 447 ELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEE 506

Query: 282 KALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
             L+++ D + ++ + PD +T+V L   C   G   LG Q     V   G+         
Sbjct: 507 DGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVK-VGLILDTSVVNA 565

Query: 341 MVDLLGRAGKLVEA 354
           ++ +  + G++ EA
Sbjct: 566 VITMYSKCGRISEA 579



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 17/290 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFL-AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    ++ AR+L    + E N ++ + M++GY + G L  AVELF   P + V
Sbjct: 64  NTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV 123

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS-----WAEDGLKLLR 187
            +W  ++SGY + G+   A  +F  M        NA   G V  S     W E  L+LL 
Sbjct: 124 ASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG 183

Query: 188 MMIGLGIRPN---ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           ++     + +    ++L  +L+ C  +      KQ  ++   + +C+++     ++  Y 
Sbjct: 184 LLSKFDSQDDPDVQTALVDMLVRCGAMDFAS--KQFSRIKNPTIICRNS-----MLVGYA 236

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           K   ++ A ++F  +  +DVV+WN +IS  ++ G+  +AL +   M  +G++PDS T+ +
Sbjct: 237 KSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTS 296

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            L AC     ++ G Q    ++ +      P   + MV+L  + G   EA
Sbjct: 297 SLTACARLSSLEWGKQLHVQVIRNLP-HIDPYVASAMVELYAKCGCFKEA 345



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSY-NIMLSCILLNSD- 53
           M+ +  + WN++L  +  Q G  +D  +++     +K   PD V+Y  +   C  + ++ 
Sbjct: 484 MSTRNVITWNAMLGAYI-QHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK 542

Query: 54  --DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
             D +        L I DT+  N +I+ + +   +++AR  F  +  K+ VSW+AMI+GY
Sbjct: 543 LGDQIIGHTVKVGL-ILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGY 601

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEM 158
            + G   +A+E+F     K      +++ A++SG    G V+  +  FD M
Sbjct: 602 SQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMM 652


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/570 (38%), Positives = 343/570 (60%), Gaps = 22/570 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           S L     + G  K+A+ +F+ +   + V++ +++S   L       + + F ++  +  
Sbjct: 329 SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG-FLQYGCFTESVELFNQMRAELM 387

Query: 69  --DTASWNTMISGFVQKKNMAKARDLF---LAMPEKNSVSWS-AMISGYIECGQLDKAVE 122
             D  +  T+ISG   + ++   R L    L   +  +V  S ++IS Y +C  L  A  
Sbjct: 388 TLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEA 447

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F+    K +V+WT+MI+ Y + G V  A + FD M  KN++TWNAM+  Y+++   EDG
Sbjct: 448 IFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDG 507

Query: 183 LKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           L++ ++M+    +RP+  +  ++  GC+ L + +LG Q+     K  L  DT+    +I+
Sbjct: 508 LRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVIT 567

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG + +A K+F  +  KD+V+WNAMI+GY+QHG G++A+ +FD +   G KPD I+
Sbjct: 568 MYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYIS 627

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +VA+L  C+H+GLV  G  YFD M   + I+   +H++CMVDLLGRAG L EA DLI  M
Sbjct: 628 YVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDM 687

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P KP   ++G LLSAC++H   +LAE AA ++F L+  + +G Y+ +A IYA   K DD 
Sbjct: 688 PMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDS 746

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           A+IR  M++  + K PGYSW+EV   VH F++ D  HP++++I +KL EL +++   GYV
Sbjct: 747 AQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV 806

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
                      +  + +  + HSEKLA+AFGL+ +P   PI + KNLR+CGDCH   K I
Sbjct: 807 RT---------DSTRSE--IHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLI 855

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  RE ++RD  RFHHF  G+CSCGDYW
Sbjct: 856 STVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 44/331 (13%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I  P+V+++N+ML+        +  A + F R+P +D ASWNT++SG
Sbjct: 73  GALSDARRLLLMDIAHPNVITHNVMLNG-YAKLGRLSDAVELFGRMPARDVASWNTLMSG 131

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----------------------------------- 104
           + Q +    + + FL+M  ++  SW                                   
Sbjct: 132 YFQSRQYLVSLETFLSM-HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQ 190

Query: 105 ------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
                 +A++  ++ CG +D A  LF      ++    +M++GY+K   VD A +LFD M
Sbjct: 191 DDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSM 250

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P +++V+WN M++   ++    + L ++  M   G+R ++++ +S L  C+ LSSL+ GK
Sbjct: 251 PERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGK 310

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  V ++    D    + L+ +Y K G  ++A  +F  +  ++ V W  +ISG+ Q+G
Sbjct: 311 QLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYG 370

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
              +++ LF++M+ E M  D      L+  C
Sbjct: 371 CFTESVELFNQMRAELMTLDQFALATLISGC 401



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 128/283 (45%), Gaps = 34/283 (12%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           + ++  Y+ CG L  A  L  +     +V+    M++GY K G++  A +LF  MP +++
Sbjct: 63  NTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDV 122

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            +WN +++GY ++      L+    M   G   PNA +L+  +  C  L    L  Q+  
Sbjct: 123 ASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA 182

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--------------------- 261
           +V K     D+     L+ M+ +CG ++ A +LF+ I+                      
Sbjct: 183 MVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDH 242

Query: 262 ----------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
                     +DVV+WN M+S  +Q G+  +AL +   M+ +G++ DS T+ + L AC  
Sbjct: 243 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 302

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              +  G Q    ++ +      P   + +V+L  ++G   EA
Sbjct: 303 LSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKEA 344



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 46/210 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVV 56
           +NVK  V+WN+++ G++ Q G  K A E+FD I     +PD +SY  +LS          
Sbjct: 585 LNVKDIVSWNAMITGYS-QHGMGKQAIEIFDDILKRGAKPDYISYVAVLS---------- 633

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGY 111
                                SG VQ     + +  F  M   +++S     +S M+   
Sbjct: 634 -----------------GCSHSGLVQ-----EGKFYFDMMKRAHNISPGLEHFSCMVDLL 671

Query: 112 IECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAE---KLFDEMPTKNLVTWN 167
              G L +A +L    P+K +   W A++S     G  +LAE   K   E+ + +  ++ 
Sbjct: 672 GRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYM 731

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            M   Y +   ++D  ++ ++M   GI+ N
Sbjct: 732 LMAKIYADAGKSDDSAQIRKLMRDKGIKKN 761


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 358/611 (58%), Gaps = 51/611 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQ- 63
           WN+++ G+++     +DA  ++ K+      PD  ++  +L      S   +  F   Q 
Sbjct: 87  WNAIIRGYSRN-NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQV 145

Query: 64  -RLPIK-DTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIECGQLDK 119
            RL  + D    N +I+ + + + +  AR +F  L +PE+  VSW+A++S Y + G+  +
Sbjct: 146 FRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVE 205

Query: 120 AVELFK-----------VAPVKSVVAWT----------------------------AMIS 140
           A+E+F            VA V  + A+T                            ++ +
Sbjct: 206 ALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNT 265

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G+V  A+ LFD+M + NL+ WNAMI+GY +N +A+D + L   MI   +RP+  S
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTIS 325

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           ++S +  C+ + SL+  + + + V +S    D    + LI M+ KCG +E A  +F    
Sbjct: 326 ITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTL 385

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            +DVV W+AMI GY  HG+  +A+ L+  M+ +G+ P+ +TF+ LL+ACNH+G+V  G  
Sbjct: 386 DRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +F+ M  D+ I  +  HY C++DLLGRAG L +A ++IK MP +P   ++G LLSAC+ H
Sbjct: 446 FFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           + ++L ++AA  LF+++P+N  G YVQL+N+YAA + WD VA +R+ MKE  + K  G S
Sbjct: 505 RHVELGKYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           W+EV   +  FR GD+ HP    I  +++ +E R+K  G+V + + +LH + +E  E+ L
Sbjct: 564 WVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSE++ IA+GLI  P GT +R+ KNLR C +CH ATK IS +  REI+VRDT RFHHF
Sbjct: 624 CSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHF 683

Query: 561 KDGTCSCGDYW 571
           KDG CSCGDYW
Sbjct: 684 KDGVCSCGDYW 694



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 4/243 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I     +G +  A ++FD++P   +  WNA+I GY  N+  +D L +   M    + 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ +   +L  C  LS LQ+G+ VH  VF+     D      LI++Y KC  L  A  +
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 256 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           F  L +  + +V+W A++S YAQ+G+  +AL +F +M+   +KPD +  V++L A     
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQ 236

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            ++ G +   + V   G+  +PD    +  +  + G++  A  L  KM   P   ++  +
Sbjct: 237 DLEQG-RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAM 294

Query: 374 LSA 376
           +S 
Sbjct: 295 ISG 297



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S  +S++   +H + L   +Q+H  +    L      +T LI      GD+  A ++F +
Sbjct: 22  SFYASLIDSSTHKAQL---RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDD 78

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           + R  V  WNA+I GY+++   + AL ++ KM+   + PDS TF  LL AC     + +G
Sbjct: 79  LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMG 138

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            ++  + V   G  A       ++ L  +  +L  A  + + +P  P+  I
Sbjct: 139 -RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPL-PERTI 187



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 109/283 (38%), Gaps = 67/283 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  KDA +LF ++   DV                      
Sbjct: 283 MKSPNLILWNAMISGYAKN-GFAKDAIDLFHEMINKDVR--------------------- 320

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKAR--DLFLAMPEKNSVSW--SAMISGYIECGQ 116
                   DT S  + IS   Q  ++ +AR  D +++  +     +  SA+I  + +CG 
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGS 373

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           ++ A  +F     + VV W+AMI GY   G+                             
Sbjct: 374 VECARSVFDRTLDRDVVVWSAMIVGYGLHGQ----------------------------- 404

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
             A + + L R M   G+ PN  +   +L+ C+H   ++ G      +    +       
Sbjct: 405 --AREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHY 462

Query: 237 TPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQH 277
             +I +  + G L+ A ++   + +Q   V  W A++S   +H
Sbjct: 463 ACIIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKH 504


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/527 (42%), Positives = 318/527 (60%), Gaps = 11/527 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMIS 109
           D+V A   F ++  +D  SW+ MI GFV+  +  +     R+L  A  + ++ S   +I 
Sbjct: 50  DLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIK 109

Query: 110 GYIEC-----GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
              +      G+L  +  L     + + V  T ++  Y K G +D A++LFD MP K+LV
Sbjct: 110 ACRDTMGLIMGRLIHSTVLKNGLHLDNFVCST-LVDMYAKCGMIDNAKQLFDRMPKKDLV 168

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           T   MIAGY E     +   L   M   G  P+  ++ +++  C+ L ++   + VH  V
Sbjct: 169 TRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYV 228

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                  D    T +I MY KCG ++ + ++F  +++K+V++W+AMI  Y  HG+G +AL
Sbjct: 229 CARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREAL 288

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF  M + G+ P+ ITF++LL AC+HAGLVD G+Q F  M   YG+     HYTCMVDL
Sbjct: 289 ELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDL 348

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG+L +A+ LI+ M  +    I+   L ACR+H+++DLAE AA  L +L   N  G 
Sbjct: 349 LGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQN-PGH 407

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           Y+ L+NIYA   +W DVA+IR  M +  + K+PGY+WIEV  +++ F +GD  H     I
Sbjct: 408 YILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEI 467

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +E LK L ++++ AGYVPD    LH V EEVK  +L  HSEKLAIAFGLI  P GTPIR+
Sbjct: 468 YEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRI 527

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVCGDCH   K +SAI +R+IIVRD  RFHHFK+G CSCGDYW
Sbjct: 528 TKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S L  C ++  +   KQVH  V  + +  D      L+ M  K  DL  A  LF +++ +
Sbjct: 8   STLFKCRNIFQI---KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEER 64

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D V+W+ MI G+ ++G  E+  + F ++   G KPD+ +   ++ AC     + +G +  
Sbjct: 65  DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG-RLI 123

Query: 323 DSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 364
            S V   G+    D++ C  +VD+  + G +  A  L  +MP K
Sbjct: 124 HSTVLKNGL--HLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK 165


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/542 (41%), Positives = 319/542 (58%), Gaps = 22/542 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q ++  +A  LF+ M E      NS + +
Sbjct: 263 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 322

Query: 106 AMISGYIECGQLDK--AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
            ++   +  G   +  A+  F  K    +       ++  Y + GK+D+A ++F +M  +
Sbjct: 323 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 382

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVLLGCSH 210
           +LVTWN MI GYV +   ED L LL  M  L            ++PN+ +L ++L  C+ 
Sbjct: 383 DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAA 442

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I +K+V+TWN +
Sbjct: 443 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVI 502

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I  Y  HG G++A+ L   M  +G+KP+ +TF+++  AC+H+G+VD G++ F  M  DYG
Sbjct: 503 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 562

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLDLAEFA 389
           +    DHY C+VDLLGRAG++ EA  L+  MP     A  + +LL A R+H  L++ E A
Sbjct: 563 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 622

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A NL  L P N A  YV LANIY++   WD    +R +MKE  V K PG SWIE G  VH
Sbjct: 623 AQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 681

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           +F +GD  HP+   +   L+ L +RM+  GYVPD    LH V E+ KE LL  HSEKLAI
Sbjct: 682 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 741

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFG++    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFH FK+GTCSCGD
Sbjct: 742 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 801

Query: 570 YW 571
           YW
Sbjct: 802 YW 803



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 15/321 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYI 112
           D  A +  F R+  ++  SWN++IS     +    A + F  M ++N   S   ++S   
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 113 ECGQL--------DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            C  L         K V  +  +   + S +  T +++ Y K GK+  ++ L      ++
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRD 179

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           LVTWN +++   +N    + L+ LR M+  G+ P+  ++SSVL  CSHL  L+ GK++H 
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 239

Query: 223 LVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
              K+  L +++   + L+ MYC C  +    ++F  +  + +  WNAMI+GY+Q+   +
Sbjct: 240 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 299

Query: 282 KALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +AL LF  M++  G+  +S T   ++ AC  +G      +     V   G+         
Sbjct: 300 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNT 358

Query: 341 MVDLLGRAGKLVEAVDLIKKM 361
           ++D+  R GK+  A+ +  KM
Sbjct: 359 LMDMYSRLGKIDIAMRIFGKM 379



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V SV     +++ Y K G      K+FD +  +N V+WN++I+        E  L+  R 
Sbjct: 43  VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 102

Query: 189 MIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           M+   + P++ +L SV+  CS+L     L +GKQVH    +     ++  +  L++MY K
Sbjct: 103 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGK 161

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L  +  L      +D+VTWN ++S   Q+ +  +AL    +M  EG++PD  T  ++
Sbjct: 162 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 221

Query: 306 LLACNHAGLVDLG 318
           L AC+H  ++  G
Sbjct: 222 LPACSHLEMLRTG 234



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 55/376 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++A + K  GKL  ++ L       D+V++N +LS +  N + ++ A ++ + + ++ 
Sbjct: 153 NTLVAMYGKL-GKLASSKVLLGSFGGRDLVTWNTVLSSLCQN-EQLLEALEYLREMVLEG 210

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLDKA 120
              D  + ++++      + +   ++L          ++NS   SA++  Y  C Q+   
Sbjct: 211 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 270

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     + +  W AM                               IAGY +N   +
Sbjct: 271 RRVFDGMFDRKIGLWNAM-------------------------------IAGYSQNEHDK 299

Query: 181 DGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + L L + M    G+  N+++++ V+  C    +    + +H  V K  L +D      L
Sbjct: 300 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 359

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD------- 292
           + MY + G ++ A ++F +++ +D+VTWN MI+GY      E AL L  KM++       
Sbjct: 360 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 419

Query: 293 ----EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
                 +KP+SIT + +L +C     +  G +     + +  +A      + +VD+  + 
Sbjct: 420 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKC 478

Query: 349 GKLVEAVDLIKKMPFK 364
           G L  +  +  ++P K
Sbjct: 479 GCLQMSRKVFDQIPQK 494



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 247
           MI LGI+P+  +  ++L   + L  ++LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V+++ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           AC++  + + G+      V+ YG+     +      +V + G+ GKL  +  L+     +
Sbjct: 121 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 365 PQPAIFGTLLSACRVHKRLDLAEF 388
                   L S C+  + L+  E+
Sbjct: 179 DLVTWNTVLSSLCQNEQLLEALEY 202



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 51/219 (23%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK---------- 68
           GK+  A  +F K+   D+V++N M++  + +   +D +      Q L  K          
Sbjct: 367 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 426

Query: 69  --DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAV 121
             ++ +  T++        +AK +++  A   KN+++      SA++  Y +CG L  + 
Sbjct: 427 KPNSITLMTILPSCAALSALAKGKEIH-AYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 485

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++F   P K+V+                               TWN +I  Y  +   ++
Sbjct: 486 KVFDQIPQKNVI-------------------------------TWNVIIMAYGMHGNGQE 514

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
            + LLRMM+  G++PN  +  SV   CSH   +  G ++
Sbjct: 515 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 553


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 349/606 (57%), Gaps = 47/606 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  + K   +L  A +LF ++P+ D  ++  +L C  +  DD+V          IK 
Sbjct: 183 NTLVDSYCKS-NRLDLACQLFKEMPEIDSFTFAAVL-CANIGLDDIVLGQQI-HSFVIKT 239

Query: 70  TASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
              WN  +S      + +  ++  AR LF  MPE++ VS++ +ISGY   G+   A +LF
Sbjct: 240 NFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLF 299

Query: 125 K-----------------VAPVKSVVAW----------------------TAMISGYMKF 145
           +                 ++   + + W                       +++  Y K 
Sbjct: 300 RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 359

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           GK + AE +F  +  ++ V W AMI+ YV+  + E+GL+L   M    +  + ++ +S+L
Sbjct: 360 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 419

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
              + ++SL LGKQ+H  + KS    +  + + L+ +Y KCG ++DA + F E+  +++V
Sbjct: 420 RASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIV 479

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +WNAMIS YAQ+G+ E  L+ F +M   G++PDS++F+ +L AC+H+GLV+ G+ +F+SM
Sbjct: 480 SWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSM 539

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
              Y +  + +HY  +VD+L R+G+  EA  L+ +MP  P   ++ ++L+ACR+HK  +L
Sbjct: 540 TQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQEL 599

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
           A  AA  LFN+     A  YV ++NIYAA  +W++V+++  +M++  V K+P YSW+E+ 
Sbjct: 600 ARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIK 659

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
              H F + DR HP++  I +K+  L K M+  GY PD   ALH   E+ K + L +HSE
Sbjct: 660 HETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSE 719

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           +LAIAF LI  P G+PI V KNLR C DCH A K IS I  REI VRD+TRFHHF+DG C
Sbjct: 720 RLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFC 779

Query: 566 SCGDYW 571
           SCGD+W
Sbjct: 780 SCGDFW 785



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 26/333 (7%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           PD    N  +   L N + +  A   F+++P K+T S N MISG+V+  N+ +AR LF  
Sbjct: 45  PDTSRSNFRVGNFLKNGE-LSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 103

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISG----YMKFGK 147
           M E+ +V+W+ +I GY +  Q  +A ELF    +       V +  ++SG     M    
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 163

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
             +  ++        L+  N ++  Y +++  +   +L + M      P   S +   + 
Sbjct: 164 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM------PEIDSFTFAAVL 217

Query: 208 CSH--LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
           C++  L  + LG+Q+H  V K+    +      L+  Y K   + DA KLF E+  +D V
Sbjct: 218 CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 277

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           ++N +ISGYA  GK + A  LF +++          F  +L   ++    ++G Q     
Sbjct: 278 SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ----- 332

Query: 326 VNDYGIAAKPDHY----TCMVDLLGRAGKLVEA 354
           ++   I    D        +VD+  + GK  EA
Sbjct: 333 IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 365



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q  QL  K P  K+T +   +IS Y K G+L +A KLF  +  +  VTW  +I GY+Q  
Sbjct: 65  QARQLFEKMPH-KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLN 123

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
           + ++A  LF +M+  G +PD +TFV LL  CN   + +  I    + +   G  ++    
Sbjct: 124 QFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGN-QITQVQTQIIKLGYDSRLIVG 182

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMP 362
             +VD   ++ +L  A  L K+MP
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMP 206


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 330/543 (60%), Gaps = 13/543 (2%)

Query: 41   YNIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
            +N+ +S +L++    +   D     F+RL  KD  SW  MI+G+ Q +  A+A +LF  M
Sbjct: 506  FNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEM 565

Query: 97   PEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKV 148
             ++    +++ +++ IS       L++  ++   A V      +    A++S Y + GKV
Sbjct: 566  QDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKV 625

Query: 149  DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
              A   FD++ +K+ ++WN++I+G+ ++   E+ L L   M   G   N+ +    +   
Sbjct: 626  RDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAA 685

Query: 209  SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
            +++++++LGKQ+H ++ K+    +T     LI++Y KCG+++DA + F E+  K+ ++WN
Sbjct: 686  ANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWN 745

Query: 269  AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            AM++GY+QHG G KAL LF+ MK  G+ P+ +TFV +L AC+H GLVD GI+YF SM   
Sbjct: 746  AMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREV 805

Query: 329  YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
            +G+  KP+HY C+VDLLGR+G L  A   +++MP +P   +  TLLSAC VHK +D+ EF
Sbjct: 806  HGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEF 865

Query: 389  AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
            AA +L  L P ++A  YV L+N+YA   KW    R R  MK+  V K PG SWIEV   V
Sbjct: 866  AASHLLELEPKDSA-TYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSV 924

Query: 449  HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
            H F +GD+ HP +  I+E L++L +     GY+P     L+      K    + HSEKLA
Sbjct: 925  HAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLA 984

Query: 509  IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
            IAFGL+ +   TPI VFKNLRVCGDCH   KY+S I  R I+VRD+ RFHHFK G CSC 
Sbjct: 985  IAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCK 1044

Query: 569  DYW 571
            DYW
Sbjct: 1045 DYW 1047



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 186/397 (46%), Gaps = 48/397 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV--VAAFDF 61
           + +V+W ++L+G + Q G  ++A  LF ++    V     + S +L     V      + 
Sbjct: 234 RDSVSWVAMLSGLS-QSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ 292

Query: 62  FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              L +K     +T   N +++ + +  N   A  +F AM +++ VS++++ISG  + G 
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 117 LDKAVELFK-------------VAPVKS--------------------------VVAWTA 137
            DKA+ELFK             VA + S                          ++   A
Sbjct: 353 SDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGA 412

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y+K   +  A + F    T+N+V WN M+  Y       +  K+   M   GI PN
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPN 472

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  S+L  CS L ++ LG+Q+H  V K+    +    + LI MY K G L+ A K+F 
Sbjct: 473 QFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFR 532

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            ++ KDVV+W AMI+GYAQH K  +AL LF +M+D+G+  D+I F + + AC     ++ 
Sbjct: 533 RLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQ 592

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           G Q   +     G +        +V L  R GK+ +A
Sbjct: 593 G-QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 203/441 (46%), Gaps = 61/441 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVV-------------------- 39
           +  V++NS+++G ++Q G    A ELF K+     +PD V                    
Sbjct: 335 RDEVSYNSLISGLSQQ-GYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 40  ----------SYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
                     S +I+L   LL+      D+  A +FF     ++   WN M+  +    N
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN 453

Query: 86  MAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL--------FKVAPVKSVV 133
           + ++  +F  M     E N  ++ +++     C  L +AV+L         K     +V 
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSILR---TCSSL-RAVDLGEQIHTQVLKTGFQFNVY 509

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             + +I  Y K GK+D A K+F  +  K++V+W AMIAGY ++    + L L + M   G
Sbjct: 510 VSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQG 569

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I  +    +S +  C+ + +L  G+Q+H     S    D +    L+S+Y +CG + DA 
Sbjct: 570 IHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAY 629

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
             F +I  KD ++WN++ISG+AQ G  E+AL LF +M   G + +S TF   + A  +  
Sbjct: 630 FAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVA 689

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            V LG Q   +M+   G  ++ +    ++ L  + G + +A     +MP K + + +  +
Sbjct: 690 NVKLGKQ-IHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEIS-WNAM 747

Query: 374 LSACRVHKRLDLAEFAAMNLF 394
           L+    H       F A++LF
Sbjct: 748 LTGYSQHGH----GFKALSLF 764



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 202/446 (45%), Gaps = 59/446 (13%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A   F  +P++  + WN ++  FV  K   +   LF  M ++    +  +++ ++ 
Sbjct: 118 DLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLR 177

Query: 110 GYIECGQLD---KAVELFKVAPV-----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           G   CG  D     VE      +      S+     +I  Y K G ++ A+K+FD +  +
Sbjct: 178 G---CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKR 234

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           + V+W AM++G  ++   E+ + L   M   G+ P     SSVL  C+ +   ++G+Q+H
Sbjct: 235 DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH 294

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            LV K     +T     L+++Y + G+   A ++F  + ++D V++N++ISG +Q G  +
Sbjct: 295 GLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSD 354

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV--------------- 326
           KAL LF KM  + +KPD +T  +LL AC+  G + +G Q+    +               
Sbjct: 355 KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALL 414

Query: 327 ------------NDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPA 368
                       +++ ++ + ++   +  M+   G    L E+  +  +M     +P   
Sbjct: 415 DLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQF 474

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRL 426
            + ++L  C   + +DL E     +  L        YV   L ++YA + K D   +I  
Sbjct: 475 TYPSILRTCSSLRAVDLGEQIHTQV--LKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFR 532

Query: 427 SMKENNVVKMPGYSWIEV--GTVVHE 450
            +KE +VV     SW  +  G   HE
Sbjct: 533 RLKEKDVV-----SWTAMIAGYAQHE 553



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 14/316 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           VV+ F FFQ+    +TA    +   +   +  A   +    M E+    NS ++  ++ G
Sbjct: 22  VVSIFFFFQKFLEHNTA----LSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDG 77

Query: 111 YIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
            +  G      +L     K+     VV    ++  Y+ FG +D A  +FDEMP + L  W
Sbjct: 78  CLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCW 137

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVF 225
           N ++  +V    A   L L R M+   ++P+  + + VL GC          +++H    
Sbjct: 138 NKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTI 197

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
                       PLI +Y K G L  A K+F  +Q++D V+W AM+SG +Q G  E+A+ 
Sbjct: 198 THGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVL 257

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF +M   G+ P    F ++L AC       +G Q    +V   G + +      +V L 
Sbjct: 258 LFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ-LHGLVLKQGFSLETYVCNALVTLY 316

Query: 346 GRAGKLVEAVDLIKKM 361
            R G  + A  +   M
Sbjct: 317 SRLGNFIPAEQVFNAM 332



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 48/309 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDF 61
           K  ++WNS+++GFA Q G  ++A  LF ++ +   ++ S+    +     +   V     
Sbjct: 638 KDNISWNSLISGFA-QSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQ 696

Query: 62  FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              + IK     +T   N +I+ + +  N+  A   F  MPEKN +SW+AM++GY + G 
Sbjct: 697 IHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGH 756

Query: 117 LDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             KA+ LF    ++  + + V +  ++S     G VD   K F  M              
Sbjct: 757 GFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSM-------------- 802

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
                         R + GL  +P   +    LLG S L S     +  + V + P+  D
Sbjct: 803 --------------REVHGLVPKPEHYACVVDLLGRSGLLS-----RARRFVEEMPIQPD 843

Query: 233 TTALTPLIS--MYCKCGDL-EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                 L+S  +  K  D+ E A    LE++ KD  T+  + + YA  GK     R    
Sbjct: 844 AMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQM 903

Query: 290 MKDEGMKPD 298
           MKD G+K +
Sbjct: 904 MKDRGVKKE 912


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/542 (41%), Positives = 319/542 (58%), Gaps = 22/542 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q ++  +A  LF+ M E      NS + +
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409

Query: 106 AMISGYIECGQLDK--AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
            ++   +  G   +  A+  F  K    +       ++  Y + GK+D+A ++F +M  +
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVLLGCSH 210
           +LVTWN MI GYV +   ED L LL  M  L            ++PN+ +L ++L  C+ 
Sbjct: 470 DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAA 529

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I +K+V+TWN +
Sbjct: 530 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVI 589

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I  Y  HG G++A+ L   M  +G+KP+ +TF+++  AC+H+G+VD G++ F  M  DYG
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLDLAEFA 389
           +    DHY C+VDLLGRAG++ EA  L+  MP     A  + +LL A R+H  L++ E A
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A NL  L P N A  YV LANIY++   WD    +R +MKE  V K PG SWIE G  VH
Sbjct: 710 AQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           +F +GD  HP+   +   L+ L +RM+  GYVPD    LH V E+ KE LL  HSEKLAI
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFG++    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFH FK+GTCSCGD
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888

Query: 570 YW 571
           YW
Sbjct: 889 YW 890



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 15/321 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYI 112
           D  A +  F R+  ++  SWN++IS     +    A + F  M ++N   S   ++S   
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 113 ECGQL--------DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            C  L         K V  +  +   + S +  T +++ Y K GK+  ++ L      ++
Sbjct: 208 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRD 266

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           LVTWN +++   +N    + L+ LR M+  G+ P+  ++SSVL  CSHL  L+ GK++H 
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 223 LVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
              K+  L +++   + L+ MYC C  +    ++F  +  + +  WNAMI+GY+Q+   +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 282 KALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +AL LF  M++  G+  +S T   ++ AC  +G      +     V   G+         
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNT 445

Query: 341 MVDLLGRAGKLVEAVDLIKKM 361
           ++D+  R GK+  A+ +  KM
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKM 466



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V SV     +++ Y K G      K+FD +  +N V+WN++I+        E  L+  R 
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189

Query: 189 MIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           M+   + P++ +L SV+  CS+L     L +GKQVH    +     ++  +  L++MY K
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGK 248

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L  +  L      +D+VTWN ++S   Q+ +  +AL    +M  EG++PD  T  ++
Sbjct: 249 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308

Query: 306 LLACNHAGLVDLG 318
           L AC+H  ++  G
Sbjct: 309 LPACSHLEMLRTG 321



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 247
           MI LGI+P+  +  ++L   + L  ++LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V+++ 
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           AC++  + + G+      V+ YG+     +      +V + G+ GKL  +  L+     +
Sbjct: 208 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265

Query: 365 PQPAIFGTLLSACRVHKRLDLAEF 388
                   L S C+  + L+  E+
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEY 289



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 55/376 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++A + K  GKL  ++ L       D+V++N +LS +  N + ++ A ++ + + ++ 
Sbjct: 240 NTLVAMYGKL-GKLASSKVLLGSFGGRDLVTWNTVLSSLCQN-EQLLEALEYLREMVLEG 297

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLDKA 120
              D  + ++++      + +   ++L          ++NS   SA++  Y  C Q+   
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     + +  W AM                               IAGY +N   +
Sbjct: 358 RRVFDGMFDRKIGLWNAM-------------------------------IAGYSQNEHDK 386

Query: 181 DGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + L L + M    G+  N+++++ V+  C    +    + +H  V K  L +D      L
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD------- 292
           + MY + G ++ A ++F +++ +D+VTWN MI+GY      E AL L  KM++       
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 293 ----EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
                 +KP+SIT + +L +C     +  G +     + +  +A      + +VD+  + 
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKC 565

Query: 349 GKLVEAVDLIKKMPFK 364
           G L  +  +  ++P K
Sbjct: 566 GCLQMSRKVFDQIPQK 581



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 51/219 (23%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK---------- 68
           GK+  A  +F K+   D+V++N M++  + +   +D +      Q L  K          
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 69  --DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAV 121
             ++ +  T++        +AK +++  A   KN+++      SA++  Y +CG L  + 
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIH-AYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++F   P K+V+                               TWN +I  Y  +   ++
Sbjct: 573 KVFDQIPQKNVI-------------------------------TWNVIIMAYGMHGNGQE 601

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
            + LLRMM+  G++PN  +  SV   CSH   +  G ++
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/522 (43%), Positives = 313/522 (59%), Gaps = 13/522 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI---SG 110
           A + F  +P ++  SW TMIS +       KA D  + M  +    N  ++S+++    G
Sbjct: 70  ARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDG 129

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
            +   QL  ++   KV     V   +A+I  Y K G+   A  +F+EM T +LV WN++I
Sbjct: 130 LLNLRQLHGSI--LKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSII 187

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            G+ +NS  ++ L L + M       + S+L+SVL  C+ L+ L+LG+QVH  V K    
Sbjct: 188 GGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD-- 245

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
           +D      L+ MYCKCG LEDA  LF  +   KDV++W+ MI+G AQ+G    AL+LF+ 
Sbjct: 246 QDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEA 305

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           MK +G KP+ IT + +L AC+HAGLV+ G  YF SM   +GI    +HY C++DLLGRAG
Sbjct: 306 MKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAG 365

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           KL EAV LI +M  +P    +  LL ACRVHK +DLA +AA  +  L+PA+A G Y+ L+
Sbjct: 366 KLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADA-GTYILLS 424

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYA  +KW+DVA +R  M+   V K PG SWIEV   VH F  GD  HP +  I  +L 
Sbjct: 425 NIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELS 484

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L +R+   GYVPD  F L  +  E  E  L +HSEKLAI FGL+ +P    I + KNLR
Sbjct: 485 QLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLR 544

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +CGDCH   K +S +E R I++RD  R+HHF+ G CSCGDYW
Sbjct: 545 ICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 3/185 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +I+ Y+KFG +D A  LFDEMP +N+V+W  MI+ Y  ++     L  L +M+  G+R
Sbjct: 55  NTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVR 114

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + SSVL  C  L +L   +Q+H  + K  L  D    + LI  Y K G+  DA  +
Sbjct: 115 PNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNV 171

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E+   D+V WN++I G+AQ+  G++ L L+ +MK      D  T  ++L AC    L+
Sbjct: 172 FNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALL 231

Query: 316 DLGIQ 320
           +LG Q
Sbjct: 232 ELGRQ 236



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 53/292 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + +++ V   S L     + G+  DA  +F+++   D+V                     
Sbjct: 143 VGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLV--------------------- 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG----- 115
                       WN++I GF Q  +  +   L+  M   + V+  + ++  +        
Sbjct: 182 -----------VWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLAL 230

Query: 116 -QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGY 173
            +L + V +  +   + ++   A++  Y K G ++ A  LF  M T K++++W+ MIAG 
Sbjct: 231 LELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGL 290

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N ++ D LKL   M   G +PN  ++  VL  CSH   +  G    Q +      K+ 
Sbjct: 291 AQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSM------KEH 344

Query: 234 TALTP-------LISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
             + P       +I +  + G L++A KL  E+  + D VTW  ++     H
Sbjct: 345 FGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVH 396



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  +A + S ++  C    ++Q  + VH+ VF +     T  +  LI+MY K G L++A 
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            LF E+  ++VV+W  MIS Y+      KAL     M  EG++P+  T+ ++L AC+  G
Sbjct: 72  NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD--G 129

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           L++L  +     +   G+ +     + ++D   + G+  +A+++  +M
Sbjct: 130 LLNL--RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM 175


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 335/571 (58%), Gaps = 12/571 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S L G   + G + DA+ +FD++   +VV YN M++  LL    V  A   F+ +  +D
Sbjct: 178 GSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITG-LLRCKMVEEARRLFEVMTDRD 236

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVE------ 122
             +W TM++GF Q    ++A + F  M  +  ++      S    CG L  A+E      
Sbjct: 237 CITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGAL-SALEQGKQIH 295

Query: 123 --LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + +     +V   +A++  Y K   +  AE  F  M  KN+++W A+I GY +N  +E
Sbjct: 296 AYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSE 355

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + +++   M   GI P+  +L SV+  C++L+SL+ G Q H L   S L    T    L+
Sbjct: 356 EAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALV 415

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG +EDA +LF E+   D V+W A+++GYAQ G+ ++ + LF+KM  + +KPD +
Sbjct: 416 TLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGV 475

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +L AC+ AG V+ G  YF SM  D+GI    DHYTCM+DL  R+G+L EA + IK+
Sbjct: 476 TFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQ 535

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP  P    +GTLLSACR+   +++ ++AA NL  ++P N A  YV L +++A    W+ 
Sbjct: 536 MPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPAS-YVLLCSMHATKGNWNQ 594

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA++R  M++  V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M   GY
Sbjct: 595 VAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGY 654

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
            PD+   LH V +  K  ++  HSEKLAIAFGL+ VP   PIR+ KNLRVC DCH ATK 
Sbjct: 655 KPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKL 714

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I  R+I+VRD  RFH F +G CSCGD+W
Sbjct: 715 ISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 197/446 (44%), Gaps = 84/446 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDDVVAAFDFFQRL 65
           N +L  + K  G+   A+ +FD  P P++ +YN +LS +    LL+  D       F  +
Sbjct: 45  NHLLTAYGKA-GRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMD-----SLFASM 98

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS------VSWSAMISG--------- 110
             +DT S+N +I+GF      A+A  L+  +    S      ++ SAM+           
Sbjct: 99  AQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRAL 158

Query: 111 --------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
                                     Y + G +  A  +F     K+VV +  MI+G ++
Sbjct: 159 GRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLR 218

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
              V+ A +LF+ M  ++ +TW  M+ G+ +N      L   R M   GI  +  +  S+
Sbjct: 219 CKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSI 278

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C  LS+L+ GKQ+H  + ++    +    + L+ MY KC  ++ A   F  +  K++
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF-- 322
           ++W A+I GY Q+G  E+A+R+F +M+ +G+ PD  T  +++ +C +   ++ G Q+   
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCL 398

Query: 323 -------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEA 354
                        +++V  YG     +                +T +V    + G+  E 
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKET 458

Query: 355 VDLIKKM---PFKPQPAIFGTLLSAC 377
           +DL +KM     KP    F  +LSAC
Sbjct: 459 IDLFEKMLAKDVKPDGVTFIGVLSAC 484


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/627 (38%), Positives = 347/627 (55%), Gaps = 68/627 (10%)

Query: 1   MNVKTTVNWNSVLAGFAK----------------QRGKLKDAQELFDKIPQPDVVSYNIM 44
           M  +  V WN+++AG+A+                + G+  DA  L   +P         +
Sbjct: 286 MPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPA--CADAQAL 343

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
            +C  +++  V   FD       +       ++  + +   +  AR +F  M ++NSVSW
Sbjct: 344 GACREVHAFAVRGGFD-------EQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSW 396

Query: 105 SAMISGYIECGQLDKAVELFK--------------------------------------- 125
           +AMI GY E G   +A+ LFK                                       
Sbjct: 397 NAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR 456

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
           +    +V    A+I+ Y K  + DLA ++FDE+  K  V+WNAMI G  +N  +ED ++L
Sbjct: 457 IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRL 516

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M    ++P++ +L S++   + +S     + +H    +  L +D   LT LI MY K
Sbjct: 517 FSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 576

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           CG +  A  LF   + + V+TWNAMI GY  HG G+ A+ LF++MK  G  P+  TF+++
Sbjct: 577 CGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSV 636

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC+HAGLVD G +YF SM  DYG+    +HY  MVDLLGRAGKL EA   I+KMP +P
Sbjct: 637 LSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEP 696

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY-VQLANIYAAMKKWDDVARI 424
             +++G +L AC++HK ++LAE +A  +F L P    G Y V LANIYA    W DVAR+
Sbjct: 697 GISVYGAMLGACKLHKNVELAEESAQRIFELEPEE--GVYHVLLANIYANASLWKDVARV 754

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R +M++  + K PG+S +++   +H F SG   H +   I+ +L +L + +K  GYVPD 
Sbjct: 755 RTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDT 814

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
           + ++H V ++VK QLL  HSEKLAIA+GLI+   GT I++ KNLRVC DCH ATK IS +
Sbjct: 815 D-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLV 873

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
             REII+RD  RFHHFKDG CSCGDYW
Sbjct: 874 TGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 159/309 (51%), Gaps = 18/309 (5%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQ 116
           F R+P +D  +WN +++G+ +      A  + + M E+     ++V+  +++    +   
Sbjct: 283 FDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQA 342

Query: 117 LDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           L    E+   A      + V   TA++  Y K G VD A K+FD M  +N V+WNAMI G
Sbjct: 343 LGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKG 402

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y EN  A + L L + M+G G+     S+ + L  C  L  L  G++VH+L+ +  L  +
Sbjct: 403 YAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESN 462

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
              +  LI+MYCKC   + A ++F E+  K  V+WNAMI G  Q+G  E A+RLF +M+ 
Sbjct: 463 VNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQL 522

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRA 348
           E +KPDS T V+++ A     L D+        ++ Y I    D      T ++D+  + 
Sbjct: 523 ENVKPDSFTLVSIIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 349 GKLVEAVDL 357
           G++  A  L
Sbjct: 578 GRVSIARSL 586



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 140/268 (52%), Gaps = 3/268 (1%)

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIG 191
           +A TA+ + Y K  +   A ++FD MP ++ V WNA++AGY  N  AE  + + +RM   
Sbjct: 261 LAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEE 320

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G RP+A +L SVL  C+   +L   ++VH    +    +     T ++ +YCKCG ++ 
Sbjct: 321 DGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDS 380

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F  +Q ++ V+WNAMI GYA++G   +AL LF +M  EG+    ++ +A L AC  
Sbjct: 381 ARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGE 440

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            G +D G +  + +V   G+ +  +    ++ +  +  +   A  +  ++ +K + +   
Sbjct: 441 LGFLDEGRRVHELLVR-IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNA 499

Query: 372 TLLSACRVHKRLDLAE-FAAMNLFNLNP 398
            +L   +     D    F+ M L N+ P
Sbjct: 500 MILGCTQNGSSEDAVRLFSRMQLENVKP 527



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G  P   + +S+L  C+  + L  G+ VH  +    L  +  A T L +MY KC    DA
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH 311
            ++F  +  +D V WNA+++GYA++G  E A+ +  +M++E G +PD++T V++L AC  
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD 339

Query: 312 A 312
           A
Sbjct: 340 A 340


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/542 (41%), Positives = 319/542 (58%), Gaps = 22/542 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q ++  +A  LF+ M E      NS + +
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409

Query: 106 AMISGYIECGQLDK--AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
            ++   +  G   +  A+  F  K    +       ++  Y + GK+D+A ++F +M  +
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVLLGCSH 210
           +LVTWN MI GYV +   ED L LL  M  L            ++PN+ +L ++L  C+ 
Sbjct: 470 DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAA 529

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I +K+V+TWN +
Sbjct: 530 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVI 589

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I  Y  HG G++A+ L   M  +G+KP+ +TF+++  AC+H+G+VD G++ F  M  DYG
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLDLAEFA 389
           +    DHY C+VDLLGRAG++ EA  L+  MP     A  + +LL A R+H  L++ E A
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A NL  L P N A  YV LANIY++   WD    +R +MKE  V K PG SWIE G  VH
Sbjct: 710 AQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           +F +GD  HP+   +   L+ L +RM+  GYVPD    LH V E+ KE LL  HSEKLAI
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFG++    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFH FK+GTCSCGD
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888

Query: 570 YW 571
           YW
Sbjct: 889 YW 890



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 15/321 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYI 112
           D  A +  F R+  ++  SWN++IS     +    A + F  M ++N   S   ++S   
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 113 ECGQL--------DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            C  L         K V  +  +   + S +  T +++ Y K GK+  ++ L      ++
Sbjct: 208 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRD 266

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           LVTWN +++   +N    + L+ LR M+  G+ P+  ++SSVL  CSHL  L+ GK++H 
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 223 LVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
              K+  L +++   + L+ MYC C  +    ++F  +  + +  WNAMI+GY+Q+   +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 282 KALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +AL LF  M++  G+  +S T   ++ AC  +G      +     V   G+         
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNT 445

Query: 341 MVDLLGRAGKLVEAVDLIKKM 361
           ++D+  R GK+  A+ +  KM
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKM 466



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V SV     +++ Y K G      K+FD +  +N V+WN++I+        E  L+  R 
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189

Query: 189 MIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           M+   + P++ +L SV+  CS+L     L +GKQVH    +     ++  +  L++MY K
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGK 248

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L  +  L      +D+VTWN ++S   Q+ +  +AL    +M  EG++PD  T  ++
Sbjct: 249 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308

Query: 306 LLACNHAGLVDLG 318
           L AC+H  ++  G
Sbjct: 309 LPACSHLEMLRTG 321



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 247
           MI LGI+P+  +  ++L   + L  ++LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V+++ 
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           AC++  + + G+      V+ YG+     +      +V + G+ GKL  +  L+     +
Sbjct: 208 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265

Query: 365 PQPAIFGTLLSACRVHKRLDLAEF 388
                   L S C+  + L+  E+
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEY 289



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 55/376 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++A + K  GKL  ++ L       D+V++N +LS +  N + ++ A ++ + + ++ 
Sbjct: 240 NTLVAMYGKL-GKLASSKVLLGSFGGRDLVTWNTVLSSLCQN-EQLLEALEYLREMVLEG 297

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLDKA 120
              D  + ++++      + +   ++L          ++NS   SA++  Y  C Q+   
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     + +  W AM                               IAGY +N   +
Sbjct: 358 RRVFDGMFDRKIGLWNAM-------------------------------IAGYSQNEHDK 386

Query: 181 DGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + L L + M    G+  N+++++ V+  C    +    + +H  V K  L +D      L
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD------- 292
           + MY + G ++ A ++F +++ +D+VTWN MI+GY      E AL L  KM++       
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 293 ----EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
                 +KP+SIT + +L +C     +  G +     + +  +A      + +VD+  + 
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKC 565

Query: 349 GKLVEAVDLIKKMPFK 364
           G L  +  +  ++P K
Sbjct: 566 GCLQMSRKVFDQIPQK 581



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 51/219 (23%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK---------- 68
           GK+  A  +F K+   D+V++N M++  + +   +D +      Q L  K          
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 69  --DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAV 121
             ++ +  T++        +AK +++  A   KN+++      SA++  Y +CG L  + 
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIH-AYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++F   P K+V+                               TWN +I  Y  +   ++
Sbjct: 573 KVFDQIPQKNVI-------------------------------TWNVIIMAYGMHGNGQE 601

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
            + LLRMM+  G++PN  +  SV   CSH   +  G ++
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/474 (44%), Positives = 299/474 (63%), Gaps = 1/474 (0%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           EK+    ++++  Y   G  + A  +F+      VV+WT+MI G+ K G V+ A KLFD+
Sbjct: 151 EKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQ 210

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           MP KNLVTW+ MI+GY +N+  +  ++L +++   G+R N + + SV+  C+HL +L+LG
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG 270

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           ++ H  V K+ +  +    T L+ MY +CG ++ A  +F ++  +D ++W A+I+G A H
Sbjct: 271 ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMH 330

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  E++L+ F  M + G+ P  ITF A+L AC+H GLV+ G Q F+SM  D+ +  + +H
Sbjct: 331 GYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEH 390

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CMVDLLGRAGKL EA   + KMP KP   ++G LL ACR+HK  ++ E     L  L 
Sbjct: 391 YGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLL 450

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P + +G YV L+NIYA  K+W+ V  +R  MK   + K PG+S IE+   VH+F  GD  
Sbjct: 451 PQH-SGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSS 509

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HPE+  I    +E+  R++ AGY  +   AL  + EE KE  L  HSEKLAIAFG+++  
Sbjct: 510 HPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSE 569

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            GTPIR+ KNLRVC DCH ATK IS +  RE+IVRD  RFHHF+ G CSC DYW
Sbjct: 570 AGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 127/277 (45%), Gaps = 47/277 (16%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D  AA   FQR+   D  SW +MI GF +  ++  AR LF  MPEKN V+WS MISGY +
Sbjct: 169 DTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQ 228

Query: 114 CGQLDKAVELFKVAPVKSVVA--------------------------------------- 134
               DKAVELFKV   + V A                                       
Sbjct: 229 NNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLIL 288

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA++  Y + G +D A  +F+++P ++ ++W A+IAG   + ++E  LK    M+  G+
Sbjct: 289 GTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGL 348

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLE 250
            P   + ++VL  CSH   ++ G Q+ + + +     P  +    +  L+    + G LE
Sbjct: 349 TPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLG---RAGKLE 405

Query: 251 DACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRL 286
           +A +  L++  K +   W A++     H   E   R+
Sbjct: 406 EAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERV 442



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 35/286 (12%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +D A ++F ++   NL  +NAMI G+  +   +            G+ P+  +   ++  
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L  + +G Q H  + K    KD      L+ MY   GD E A  +F  +   DVV+W
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 268 NA-------------------------------MISGYAQHGKGEKALRLFDKMKDEGMK 296
            +                               MISGYAQ+   +KA+ LF  ++ +G++
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            +    V+++ +C H G ++LG +  D +V + G+       T +VD+  R G + +AV 
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLNLILGTALVDMYARCGSIDKAVW 307

Query: 357 LIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPAN 400
           + + +P +   + +  L++   +H      L  FA M    L P +
Sbjct: 308 VFEDLPERDTLS-WTALIAGLAMHGYSERSLKYFATMVEAGLTPRD 352


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/527 (42%), Positives = 317/527 (60%), Gaps = 42/527 (7%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAP----------- 128
           +  AR +   MPE+N VSW+AMISGY + G   +A+ LF        AP           
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 129 ------------VKSVVAWTA----------MISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                       + S+V  T+          ++  Y K GK+  A ++FD +P +++V+ 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            A+I+GY +    E+ L L R +   G+R N  + +SVL   S L++L  G+QVH  V +
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + L         LI MY KCG L  + ++F  +  + V++WNAM+ GY++HG G +A+ L
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 287 FDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDL 344
           F  MK+E  +KPDS+TF+A+L  C+H G+ D G++ F  MVN   G   + +HY C+VDL
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG++ EA + IKKMPF+P  AI+G+LL ACRVH+ + + EF A  L  +   NA G 
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENA-GN 419

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+N+YA+  +WDDV  +R  MKE  V+K PG SWIE+   +H F + DR HP    +
Sbjct: 420 YVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEV 479

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
             K++EL  ++K AGYVP+L   L+ V +E KE++L  HSEKLA+AFGLI  P GTP+R+
Sbjct: 480 FAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRI 539

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH   K++S +  RE+ +RD  RFHH   GTCSCGDYW
Sbjct: 540 IKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I  Y K   +  A ++ DEMP +N+V+W AMI+GY +  +A + L L   M+  G  
Sbjct: 49  TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA 108

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + ++VL  C+  S  QLG+Q+H LV K+         + L+ MY K G + +A ++
Sbjct: 109 PNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRV 168

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DVV+  A+ISGYAQ G  E+AL LF +++ EGM+ + +T+ ++L A +    +
Sbjct: 169 FDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 228

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMP 362
           D G Q     V+ + + AK   Y      ++D+  + G L  +  +   MP
Sbjct: 229 DHGRQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 274



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+        SVL  C   ++++ G++VH  + K+         T LI +Y KC  L DA
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++  E+  ++VV+W AMISGY+Q G   +AL LF +M   G  P+  TF  +L +C  +
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               LG Q   S+V      +     + ++D+  +AGK+ EA  +   +P
Sbjct: 125 SGFQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  GK+ +A+ +FD +P+ DVVS   ++S    L  D+   A D F+RL  +
Sbjct: 150 SSLLDMYAKA-GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE--EALDLFRRLQRE 206

Query: 69  DT-------ASWNTMISGFVQKKNMAKARDLFL-AMPEKNSVSWSAMISGYIECGQLDKA 120
                    AS  T +SG     +  +     L A      V  +++I  Y +CG L  +
Sbjct: 207 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 266

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-----LVTWNAMIAGYVE 175
             +F   P ++V++W AM+ GY K G    A +LF  M  +N      VT+ A+++G   
Sbjct: 267 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 326

Query: 176 NSWAEDGLKLLRMMI 190
               + GL++   M+
Sbjct: 327 GGMEDRGLEIFYEMV 341



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-----SVSWSAMISGYIECGQ 116
           F  +P +   SWN M+ G+ +     +A +LF  M E+N     SV++ A++SG    G 
Sbjct: 270 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGM 329

Query: 117 LDKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAM 169
            D+ +E+F      K      +  +  ++  + + G+V+ A +   +MP +     W ++
Sbjct: 330 EDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSL 389

Query: 170 IA 171
           + 
Sbjct: 390 LG 391


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/523 (42%), Positives = 312/523 (59%), Gaps = 9/523 (1%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISG 110
            AA   F+ +P   +  WN MI GF        + +L+  M      P+K +  ++     
Sbjct: 770  AASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCA 829

Query: 111  YIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             +   Q  K +   L        +    A++  Y K G ++ A  +FD+M  ++LV+W +
Sbjct: 830  GLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTS 889

Query: 169  MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
            MI+GY  N +  + L    +M   G+ PN  S+ SVLL C +L +L+ G+  H  V ++ 
Sbjct: 890  MISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTG 949

Query: 229  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               D    T ++ MY KCG L+ A  LF E   KD+V W+AMI+ Y  HG G KA+ LFD
Sbjct: 950  FEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFD 1009

Query: 289  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            +M   G++P  +TF  +L AC+H+GL++ G  YF  M  ++ IA K  +Y CMVDLLGRA
Sbjct: 1010 QMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRA 1069

Query: 349  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            G+L EAVDLI+ MP +P  +I+G+LL ACR+H  LDLAE  A +LF+L+P + AG +V L
Sbjct: 1070 GQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVH-AGYHVLL 1128

Query: 409  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
            +NIYAA  +W++V ++R  M      K+ G+S +E    VH+F  GDR HP+   ++ KL
Sbjct: 1129 SNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKL 1188

Query: 469  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            +EL   MK  GYVP  +F LH + EE KE  L +HSE+LAIAFGLI    GT +R+ KNL
Sbjct: 1189 EELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNL 1248

Query: 529  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            R+CGDCH A K IS I  R I+VRD  RFH F+DG CSCGDYW
Sbjct: 1249 RICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/444 (39%), Positives = 268/444 (60%), Gaps = 10/444 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A + F ++P KD  SW+TMI+ +   +   +A +LF  M EK    NSV+  + +     
Sbjct: 260 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV 319

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              L++  ++ K+A  K         TA+I  YMK    D A  LF  +P K++V+W A+
Sbjct: 320 SRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVAL 379

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           ++GY +N  A   + + R M+  GI+P+A ++  +L   S L   Q    +H  V +S  
Sbjct: 380 LSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGF 439

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             +      LI +Y KCG L DA KLF  +  +DVV W++MI+ Y  HG+G +AL +FD+
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQ 499

Query: 290 M-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           M K+  ++P+++TF+++L AC+HAGLV+ G++ FD MV+DY +    +H+  MVDLLGR 
Sbjct: 500 MVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRI 559

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G+L +A+D+I +MP    P ++G LL ACR+H  +++ E AA NLF L+P++ AG Y+ L
Sbjct: 560 GQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSH-AGYYILL 618

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           +NIYA   KWD+VA +R  +KE  + KM G S +EV   VH F + DR HP+   I+E L
Sbjct: 619 SNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELL 678

Query: 469 KELEKRMKLAGYVPDLEFALHAVG 492
           ++LE +M    Y+PDL+F LH  G
Sbjct: 679 RKLEAQMGKEVYIPDLDFLLHDTG 702



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 169/338 (50%), Gaps = 14/338 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS--AMISGY 111
           + +  F+ FQR    DT  W +M++G+ Q  +  +A  LF  M   + V      ++S  
Sbjct: 157 EALKVFEEFQR---PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVV 213

Query: 112 IECGQL--DKAVELFKVAPVK-----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
             C QL   KA        ++      +    ++++ Y K G   +A  LF +MP K+++
Sbjct: 214 SACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVI 273

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W+ MIA Y  N  A + L L   MI     PN+ ++ S L  C+   +L+ GK++H++ 
Sbjct: 274 SWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIA 333

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                  D +  T LI MY KC   ++A  LF  + +KDVV+W A++SGYAQ+G   K++
Sbjct: 334 VWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSM 393

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F  M  +G++PD++  V +L A +  G+    +     +V   G  +       +++L
Sbjct: 394 GVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIEL 452

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
             + G L +AV L K M  +    I+ ++++A  +H R
Sbjct: 453 YSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGR 489



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 1/210 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y+ F ++D A  +F+++P      WN MI G+  +      L+L   M+  G++P+  + 
Sbjct: 762 YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
              L  C+ LS LQ GK +HQ +       D      L+ MY KCGD+E A  +F ++  
Sbjct: 822 PFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV 881

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +D+V+W +MISGYA +G   + L  FD M+  G+ P+ ++ +++LLAC + G +  G ++
Sbjct: 882 RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EW 940

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           F S V   G        T ++D+  + G L
Sbjct: 941 FHSYVIQTGFEFDILVATAIMDMYSKCGSL 970



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 17/281 (6%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++FK   +      T + S Y K   +  A K+FDE P  N+  WN+ +  Y      E+
Sbjct: 26  QVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEE 85

Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPL 239
            L+L  +MI   G  P+  ++   L  C+ L  L+LGK +H    K+  +  D    + L
Sbjct: 86  TLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSAL 145

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPD 298
           + +Y KCG + +A K+F E QR D V W +M++GY Q+   E+AL LF +M   + +  D
Sbjct: 146 VELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLD 205

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEA 354
            +T V+++ AC     V  G     S V+   I  + D        +++L  + G    A
Sbjct: 206 PVTLVSVVSACAQLLNVKAG-----SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIA 260

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            +L  KMP K    I  + + AC  +     A   A+NLF+
Sbjct: 261 ANLFSKMPEK--DVISWSTMIACYANNE---AANEALNLFH 296



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 166/366 (45%), Gaps = 70/366 (19%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF------------DFFQRLPIK 68
           L+ A+++FD+ P P+V  +N  L   C     ++ +  F            +F   + +K
Sbjct: 52  LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111

Query: 69  DTASWNTM-----ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
             A    +     I GF  KKN     D+F+          SA++  Y +CGQ+ +A+++
Sbjct: 112 ACAGLRMLELGKVIHGFA-KKNDEIGSDMFVG---------SALVELYSKCGQMGEALKV 161

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F+       V WT+M++GY +    + A  LF +M   + V  + +              
Sbjct: 162 FEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPV-------------- 207

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
                           +L SV+  C+ L +++ G  VH LV +     D   +  L+++Y
Sbjct: 208 ----------------TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLY 251

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            K G  + A  LF ++  KDV++W+ MI+ YA +    +AL LF +M ++  +P+S+T V
Sbjct: 252 AKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVV 311

Query: 304 ALLLACNHAGLVDLG-----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           + L AC  +  ++ G     I  +     D+ ++      T ++D+  +     EAVDL 
Sbjct: 312 SALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS------TALIDMYMKCSCPDEAVDLF 365

Query: 359 KKMPFK 364
           +++P K
Sbjct: 366 QRLPKK 371



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYI 112
            D+ AA   F ++ ++D  SW +MISG+      ++    F  M     + +  +++S  +
Sbjct: 868  DIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLL 927

Query: 113  ECGQLD--KAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
             CG L   +  E F    +++     ++  TA++  Y K G +DLA  LFDE   K+LV 
Sbjct: 928  ACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVC 987

Query: 166  WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            W+AMIA Y  +      + L   M+  G+RP+  + + VL  CSH   L+ GK   QL+ 
Sbjct: 988  WSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMT 1047

Query: 226  KS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 283
            +   + +  +    ++ +  + G L +A  L   +    D   W +++     H   + A
Sbjct: 1048 EEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 1107

Query: 284  LRLFDKM 290
             ++ D +
Sbjct: 1108 EKIADHL 1114



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  VFK+ +  DT   T L S+Y KC  L+ A K+F E    +V  WN+ +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 279 KGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           + E+ LRLF  M    G  PD+ T    L AC    +++LG          +G A K D 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI-------HGFAKKNDE 134

Query: 338 Y-------TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
                   + +V+L  + G++ EA+ + ++   +P   ++ ++++ 
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTG 179



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
           G   +S     K+ H  +F   L  D+  LT    MY     ++ A  +F +I       
Sbjct: 726 GTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFL 785

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           WN MI G+A  G+   +L L+ KM ++G+KPD   F   L +C  AGL DL
Sbjct: 786 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSC--AGLSDL 834


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/607 (38%), Positives = 342/607 (56%), Gaps = 45/607 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ--R 64
           V+WN++LAG+  Q G++++A+ +F+ +P+ + ++ N M++ +      V  A   F   R
Sbjct: 172 VSWNTLLAGYV-QAGEVEEAERVFEGMPERNTIASNSMIA-LFGRKGCVEKARRIFNGVR 229

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS--------------------- 103
              +D  SW+ M+S + Q +   +A  LF+ M                            
Sbjct: 230 GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG 289

Query: 104 -W-----------------SAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMK 144
            W                 +A+I  Y  CG++  A  +F     +  +++W +MISGY++
Sbjct: 290 RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLR 349

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G +  AE LF  MP K++V+W+AMI+GY ++    + L L + M   G+RP+ ++L S 
Sbjct: 350 CGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSA 409

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           +  C+HL++L LGK +H  + ++ L  +    T LI MY KCG +E+A ++F  ++ K V
Sbjct: 410 ISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGV 469

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
            TWNA+I G A +G  E++L +F  MK  G  P+ ITF+ +L AC H GLV+ G  YF+S
Sbjct: 470 STWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNS 529

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M++++ I A   HY CMVDLLGRAG L EA +LI  MP  P  A +G LL ACR H+  +
Sbjct: 530 MIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNE 589

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           + E     L  L P +  G +V L+NIYA+   W +V  IR  M ++ VVK PG S IE 
Sbjct: 590 MGERLGRKLIQLQP-DHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEA 648

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
              VHEF +GD+ HP++  I   L  +  ++K+ GYVP        + EE KE  L  HS
Sbjct: 649 NGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHS 708

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLA+AFGLI +   TPIRV KNLR+C DCH   K IS    R+I+VRD  RFHHFK G 
Sbjct: 709 EKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGA 768

Query: 565 CSCGDYW 571
           CSC D+W
Sbjct: 769 CSCMDFW 775



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 196/408 (48%), Gaps = 56/408 (13%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCIL----------L 50
            T  WN+++      +     A    +       +PD  +Y I+L C            L
Sbjct: 68  NTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQL 127

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           ++  V + FD        D    NT+++ +    ++  AR +F   P  + VSW+ +++G
Sbjct: 128 HAHAVSSGFD-------GDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLVTWNA 168
           Y++ G++++A  +F+  P ++ +A  +MI+ + + G V+ A ++F+ +    +++V+W+A
Sbjct: 181 YVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSA 240

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M++ Y +N   E+ L L   M G G+  +   + S L  CS + ++++G+ VH L  K  
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVG 300

Query: 229 L----------------CK----------------DTTALTPLISMYCKCGDLEDACKLF 256
           +                C                 D  +   +IS Y +CG ++DA  LF
Sbjct: 301 VEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLF 360

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  KDVV+W+AMISGYAQH    +AL LF +M+  G++PD    V+ + AC H   +D
Sbjct: 361 YSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLD 420

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           LG ++  + ++   +       T ++D+  + G +  A+++   M  K
Sbjct: 421 LG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEK 467



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 3/142 (2%)

Query: 153 KLFDEMPTKNLVTWNAMIAG--YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           ++F+ +   N  TWN ++    Y++NS     L   ++ +    +P++ +   +L  C+ 
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNS-PHQALLHYKLFLASHAKPDSYTYPILLQCCAA 117

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
             S   G+Q+H     S    D      L+++Y  CG +  A ++F E    D+V+WN +
Sbjct: 118 RVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177

Query: 271 ISGYAQHGKGEKALRLFDKMKD 292
           ++GY Q G+ E+A R+F+ M +
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPE 199



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 119/308 (38%), Gaps = 60/308 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W+++++G+A Q     +A  LF +          + L  +  +   +V+A  
Sbjct: 363 MPEKDVVSWSAMISGYA-QHECFSEALALFQE----------MQLHGVRPDETALVSAIS 411

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
               L   D   W   I  ++ +  +           + N +  + +I  Y++CG ++ A
Sbjct: 412 ACTHLATLDLGKW---IHAYISRNKL-----------QVNVILSTTLIDMYMKCGCVENA 457

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           +E+F     K V  W A+I G    G V+ +  +F +M                      
Sbjct: 458 LEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKT------------------- 498

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPL 239
                       G  PN  +   VL  C H+  +  G+   + ++ +  +  +      +
Sbjct: 499 ------------GTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCM 546

Query: 240 ISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           + +  + G L++A +L   +    DV TW A++    +H   E   RL  K+    ++PD
Sbjct: 547 VDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQ--LQPD 604

Query: 299 SITFVALL 306
              F  LL
Sbjct: 605 HDGFHVLL 612


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/527 (42%), Positives = 319/527 (60%), Gaps = 18/527 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------NSVSWSAMISG 110
           A + F R+ I+D   W  MI+ + Q +   KA  LF  M E+        ++S ++ + G
Sbjct: 186 AHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAV-G 244

Query: 111 YIECGQLDKAVELFKV--APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            +  G++  +V  + V    +  V    +++  Y K G V+ A  +FD M  +N ++WN+
Sbjct: 245 QLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNS 304

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M++GY +N    D L L   M      PN  +   ++  CS+L S  LG+++H  V  S 
Sbjct: 305 MLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 364

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           +  DTT    ++ MY KCGDL+ A ++F   E+  +DV +WN +ISGY  HG G++AL L
Sbjct: 365 MDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALEL 424

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDL 344
           F +M+ EG++P+ ITF ++L AC+HAGL+D G + F  M     ++ +P+  HY CMVD+
Sbjct: 425 FSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK---LSVRPEMKHYACMVDM 481

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG L EA  LIKK+P +P   ++G LL ACR+H   +L E AA NLF L P +  G 
Sbjct: 482 LGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT-GY 540

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV ++NIYAA  KW +V  +R +MK   + K   +S IE GT VH F + D+  P    +
Sbjct: 541 YVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREV 600

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           + K++ L   MK+ GYVPDL   LH V  E KE LL +HSEKLA+AFG++K+  G PI+V
Sbjct: 601 YRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQV 660

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH A K+IS+I  R+IIVRD  RFHHF+ G CSCGDYW
Sbjct: 661 TKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 158/341 (46%), Gaps = 22/341 (6%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI------ECGQLDKAV---ELF 124
           NTM+  +       +A DL++ M ++  V  +     ++      E G +   V   ++ 
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYM-QRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVV 159

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           +      +    A++  Y K G++  A ++FD M  +++V W AMI  Y +       L 
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L R M   G   +  +  SV      L   ++   VH     +    D +    ++ MY 
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYA 279

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG++E A  +F  ++ ++ ++WN+M+SGY Q+G+   AL LF++M+     P+ +T + 
Sbjct: 280 KCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALI 339

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDLLGRAGKLVEAVDLIKK 360
           ++ AC++     LG ++    ++++ I++K D  T +    +D+  + G L  AV++   
Sbjct: 340 MVSACSY-----LGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNN 394

Query: 361 MPFKPQP-AIFGTLLSACRV--HKRLDLAEFAAMNLFNLNP 398
                +  + +  L+S   V  H +  L  F+ M +  + P
Sbjct: 395 CELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 435



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 144/342 (42%), Gaps = 82/342 (23%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-------------- 66
           G++ DA E+FD++   DVV +  M++ +   ++  + A   F+++               
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMIT-LYEQAERPLKALMLFRKMQEEGFLGDEITAISV 239

Query: 67  -------------------------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
                                    I D +  N+++  + +  N+ +AR +F  M E+N 
Sbjct: 240 ASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNG 299

Query: 102 VSWSAMISGYIECGQLDKAVELFKVA--------PVKSVVAWT----------------- 136
           +SW++M+SGY + G+   A+ LF           PV +++  +                 
Sbjct: 300 ISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 359

Query: 137 --------------AMISGYMKFGKVDLAEKLFD--EMPTKNLVTWNAMIAGYVENSWAE 180
                         A++  YMK G +D A ++F+  E+  +++ +WN +I+GY  +   +
Sbjct: 360 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 419

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L+L   M   G+ PN  + +S+L  CSH   +  G++    + K  +  +      ++
Sbjct: 420 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMV 479

Query: 241 SMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 281
            M  + G L +A +L  +I  R     W A++     HG  E
Sbjct: 480 DMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTE 521



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 142 YMKFGKVDLAEKLFDE--------MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           Y K G +  A  LFD             N    N M+  Y     + + + L   M  +G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  N  +   VL  C+       G+ VH  V ++    D      L+ MY KCG++ DA 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  +  +DVV W AMI+ Y Q  +  KAL LF KM++EG   D IT +++  A    G
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 116/244 (47%), Gaps = 23/244 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILLNSDDV 55
           M  +  ++WNS+L+G+  Q G+  DA  LF+++      P+ V+  IM+S C  L S  +
Sbjct: 294 MEERNGISWNSMLSGYT-QNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL 352

Query: 56  ---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISG 110
              +  F    ++ I DT   N ++  +++  ++  A ++F    + E++  SW+ +ISG
Sbjct: 353 GRKLHNFVISSKMDI-DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 411

Query: 111 YIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPT----KN 162
           Y   G   +A+ELF    V+ V    + +T+++S     G +D   K F +M        
Sbjct: 412 YGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPE 471

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +  +  M+       +  +  +L++ +     RP+     ++LL C    + +LG+    
Sbjct: 472 MKHYACMVDMLGRAGFLNEAFRLIKKIPS---RPSDEVWGALLLACRIHGNTELGEIAAN 528

Query: 223 LVFK 226
            +F+
Sbjct: 529 NLFQ 532


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 346/616 (56%), Gaps = 50/616 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M VK   +WN++++GF  Q G    A  + +++    V    I ++ IL     SDDV+ 
Sbjct: 182 MPVKDVGSWNAMISGFC-QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVIN 240

Query: 58  -----------------------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                                              A   F ++ ++D  SWN++I+ + Q
Sbjct: 241 GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQ 300

Query: 83  KKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVV 133
             + + A   F  M      P+  +V     I   +   ++ +++  F +      K VV
Sbjct: 301 NNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVV 360

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL- 192
              A+++ Y K G ++ A  +FD++P K+ ++WN ++ GY +N  A + +    MM    
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              PN  +  S++   SH+ +LQ G ++H  + K+ L  D    T LI +Y KCG LEDA
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF EI R   V WNA+I+    HG+GE+AL+LF  M  E +K D ITFV+LL AC+H+
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD G + FD M  +YGI     HY CMVDLLGRAG L +A +L++ MP +P  +I+G 
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSAC+++   +L   A+  L  ++  N  G YV L+NIYA  +KW+ V ++R   ++  
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENV-GYYVLLSNIYANTEKWEGVIKVRSLARDRG 659

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PG+S + VG+    F +G++ HP+   I+++LK L  +MK  GYVPD  F    + 
Sbjct: 660 LRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIE 719

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           E+ KEQ+L  HSE+LAIAFG+I  P  +PIR+FKNLRVCGDCH ATKYIS I +REI+VR
Sbjct: 720 EDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVR 779

Query: 553 DTTRFHHFKDGTCSCG 568
           D+ RFHHFKDG CSC 
Sbjct: 780 DSNRFHHFKDGICSCA 795



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 175/340 (51%), Gaps = 22/340 (6%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ 116
           A   F  +P+KD  SWN MISGF Q  N A A  +   M  +     +  ++  +  C Q
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 117 LDKAV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            D  +        + K      V    A+I+ Y KFG++  A+ +FD+M  ++LV+WN++
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP- 228
           IA Y +N+     L+  + M   GIRP+  ++ S+    S LS  ++ + +   V +   
Sbjct: 295 IAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW 354

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L KD      L++MY K G +  A  +F ++ RKD ++WN +++GY Q+G   +A+  ++
Sbjct: 355 LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYN 414

Query: 289 KMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYF-----DSMVNDYGIAAKPDHYTCMV 342
            M++     P+  T+V+++ A +H G +  G++       +S+  D  +A      TC++
Sbjct: 415 MMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA------TCLI 468

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           DL G+ G+L +A+ L  ++P +     +  ++++  +H R
Sbjct: 469 DLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGR 507



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 27/286 (9%)

Query: 40  SYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA------ 89
           S NI+LS  L+N      D+  +   F  +  K+  SWN++IS +V+     +A      
Sbjct: 51  SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 90  ----------RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                     R  F   P       S +    + C        +FK+     V    +++
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCC-------VFKMGFEDDVFVAASLV 163

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y ++G +D+A K+F +MP K++ +WNAMI+G+ +N  A   L +L  M G G++ +  
Sbjct: 164 HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +++S+L  C+    +  G  +H  V K  L  D      LI+MY K G L+DA  +F ++
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           + +D+V+WN++I+ Y Q+     ALR F  M+  G++PD +T V+L
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 8/239 (3%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL----KL 185
           +++V  T +I+ Y+  G + L+   FD +  KN+ +WN++I+ YV      + +    +L
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
             M  G  +RP+  +   +L  C    SL  GK+VH  VFK     D      L+ +Y +
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSR 168

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L+ A K+F+++  KDV +WNAMISG+ Q+G    AL + ++MK EG+K D+IT  ++
Sbjct: 169 YGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASI 228

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           L  C  +  V  G+      V  +G+ +       ++++  + G+L +A  +  +M  +
Sbjct: 229 LPVCAQSDDVINGV-LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR 286



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K++H L+      ++    T LI++Y   GD+  +   F  I +K++ +WN++IS Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 278 GKGEKAL----RLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           GK  +A+    +LF       ++PD  TF  +L AC    LVD
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLVD 139


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/532 (40%), Positives = 317/532 (59%), Gaps = 9/532 (1%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + +    +  A   F ++ ++D  SW  MI G+ +  N+  A  LF  M E+    + ++
Sbjct: 307 MYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRIT 366

Query: 104 WSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +  +I+       L  A E+     +      ++  TA++  Y K G +  A ++FD M 
Sbjct: 367 YIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMS 426

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++V+W+AMI  YVEN   E+  +   +M    + P+  +  ++L  C HL +L LG +
Sbjct: 427 RRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGME 486

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           ++    K+ L         LI+M  K G +E A  +F  + ++DVVTWN MI GY+ HG 
Sbjct: 487 IYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGN 546

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +AL LFD+M  E  +P+S+TFV +L AC+ AG V+ G ++F  +++  GI    + Y 
Sbjct: 547 AREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYG 606

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
           CMVDLLGRAG+L EA  LI +MP KP  +I+ TLL+ACR++  LD+AE AA       P 
Sbjct: 607 CMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPY 666

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
           + A  YVQL+++YAA   W++VA++R  M+   V K  G +WIEV   +H F   DR HP
Sbjct: 667 DGA-VYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHP 725

Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 519
           +   I+ +L  L   +K  GY+P  +  LH VGE+ KE+ + +HSEKLAIA+G++ +P G
Sbjct: 726 QAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSG 785

Query: 520 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            PIR+FKNLRVCGDCH A+K+IS +  REII RD +RFHHFK+G CSCGDYW
Sbjct: 786 APIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 215/453 (47%), Gaps = 80/453 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIML-SC----------- 47
           KT V WN+++AG+A Q G +K+A  LF    D+  +P ++++ I+L +C           
Sbjct: 125 KTVVTWNAIIAGYA-QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKE 183

Query: 48  ----------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
                                 + +    +  A   F  L  +D +++N MI G+ +  +
Sbjct: 184 FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGD 243

Query: 86  MAKARDLFLAMPEK----NSVSWSAMISG--YIECGQLDKAV--ELFKVAPVKSVVAWTA 137
             KA  LF  M ++    N +S+ +++ G    E     KAV  +      V  V   TA
Sbjct: 244 GEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATA 303

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  YM  G ++ A ++FD+M  +++V+W  MI GY ENS  ED   L   M   GI+P+
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPD 363

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   ++  C+  + L L +++H  V ++    D    T L+ MY KCG ++DA ++F 
Sbjct: 364 RITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFD 423

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            + R+DVV+W+AMI  Y ++G GE+A   F  MK   ++PD +T++ LL AC H G +DL
Sbjct: 424 AMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDL 483

Query: 318 GIQYF---------------DSMVN---DYGIAAKPDH------------YTCMVDLLGR 347
           G++ +               ++++N    +G   +  +            +  M+     
Sbjct: 484 GMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSL 543

Query: 348 AGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
            G   EA+DL  +M    F+P    F  +LSAC
Sbjct: 544 HGNAREALDLFDRMLKERFRPNSVTFVGVLSAC 576



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 157/331 (47%), Gaps = 42/331 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           NT+I       NM +AR  F ++  K  V+W+A+I+GY + G + +A  LF         
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159

Query: 125 ------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                         KV  V      TA++S Y+K G +D A ++
Sbjct: 160 PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV 219

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD +  +++ T+N MI GY ++   E   +L   M   G +PN  S  S+L GCS   +L
Sbjct: 220 FDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEAL 279

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             GK VH     + L  D    T LI MY  CG +E A ++F +++ +DVV+W  MI GY
Sbjct: 280 AWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGY 339

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DYGIAA 333
           A++   E A  LF  M++EG++PD IT++ ++ AC  +  + L  +    +V   +G   
Sbjct: 340 AENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDL 399

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             D  T +V +  + G + +A  +   M  +
Sbjct: 400 LVD--TALVHMYAKCGAIKDARQVFDAMSRR 428



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 33/260 (12%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C  L    LGKQV   + +S    +   L  LI ++  CG++ +A + F  ++ K VVTW
Sbjct: 71  CMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTW 130

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-- 325
           NA+I+GYAQ G  ++A  LF +M DE M+P  ITF+ +L AC+    + LG ++   +  
Sbjct: 131 NAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIK 190

Query: 326 ---VNDYGIAA-----------------------KPD--HYTCMVDLLGRAGKLVEAVDL 357
              V+D+ I                         K D   +  M+    ++G   +A  L
Sbjct: 191 VGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQL 250

Query: 358 IKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
             +M    FKP    F ++L  C   + L   +       N    +       L  +Y  
Sbjct: 251 FYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMG 310

Query: 415 MKKWDDVARIRLSMKENNVV 434
               +   R+   MK  +VV
Sbjct: 311 CGSIEGARRVFDKMKVRDVV 330



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 143/374 (38%), Gaps = 110/374 (29%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G ++ A+ +FDK+   DVVS+ +M+     NS  +D    F   Q   I+ D  ++  +I
Sbjct: 312 GSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHII 371

Query: 78  SGFVQKKNMAKARDL-----------------------------------FLAMPEKNSV 102
           +      +++ AR++                                   F AM  ++ V
Sbjct: 372 NACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVV 431

Query: 103 SWSAMISGYIECGQLDKAVELF------KVAP---------------------------- 128
           SWSAMI  Y+E G  ++A E F       V P                            
Sbjct: 432 SWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQA 491

Query: 129 -----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                V  +    A+I+  +K G ++ A  +F+ M  +++VTWN MI GY  +  A + L
Sbjct: 492 IKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREAL 551

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            L   M+    RPN+ +   VL  CS    ++ G++    +       D   + P + +Y
Sbjct: 552 DLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLL------DGRGIVPTMELY 605

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
                                     M+    + G+ ++A  L ++M    +KP+S  + 
Sbjct: 606 ------------------------GCMVDLLGRAGELDEAELLINRMP---LKPNSSIWS 638

Query: 304 ALLLACNHAGLVDL 317
            LL AC   G +D+
Sbjct: 639 TLLAACRIYGNLDV 652


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/620 (37%), Positives = 345/620 (55%), Gaps = 52/620 (8%)

Query: 1   MNVKTTVNWNSVLAGFAK---QRGKLKDAQELFDKIPQ---PDVVSYNIML-SCILLN-- 51
           M  KT V WN+++AG+++    RG LK  Q++  K P+   PD ++++  L +C ++   
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 52  ----------------SDDVV---------------AAFDFFQRLPIKDTASWNTMISGF 80
                           SD +V               +A   F RL  +D  +WNTMISG+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV----KSV 132
            ++    +A +LF  M    P+ N V++  +++       L++   + +          +
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 133 VAWTAMISGYMK-FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V    +++ Y K    ++ A ++F+ M T++++TWN +I  YV+   A+D L + + M  
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + PN  +LS+VL  C+ L + + GK VH L+       D      L++MY +CG L+D
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
              +F  I+ K +V+W+ +I+ YAQHG     L  F ++  EG+  D +T V+ L AC+H
Sbjct: 420 TVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSH 479

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            G++  G+Q F SMV D+G+A    H+ CMVDLL RAG+L  A +LI  MPF P    + 
Sbjct: 480 GGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWT 539

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           +LLS C++H     A   A  LF L   +       L+N+YA   +WDDV + R      
Sbjct: 540 SLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRR 596

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
              K PG S+IE+   VHEF +GD+ HPE   I  ++K L K+MK AGYVPD+   LH V
Sbjct: 597 AARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNV 656

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KEQ+L +HSEKLAIA+GLI  P GTP+ + KNLR C DCH A K+IS I  R+I+V
Sbjct: 657 KEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVV 716

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD+TRFHHF++G+CSC DYW
Sbjct: 717 RDSTRFHHFENGSCSCKDYW 736



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI------ 108
           V  A   F  +   ++ SW  +++ F +  +  +A   +  M  +      AM       
Sbjct: 8   VADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV 67

Query: 109 ---SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
              S  ++ GQL  A+ L        ++  TA+I+ Y +   ++LA K FDEM  K LVT
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           WNA+IAGY  N      LK+ + M+     G++P+A + SS L  C+ +  +  G+++  
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEA 187

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
               S    D+     LI+MY KCG LE A K+F  ++ +DV+ WN MISGYA+ G   +
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNH 311
           AL LF +M     KP+ +TF+ LL AC +
Sbjct: 248 ALELFQRMGPNDPKPNVVTFIGLLTACTN 276



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 167/356 (46%), Gaps = 52/356 (14%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPD----VVSYNIMLSCILLNSDDVV 56
            +V+W  ++A FA+  G  ++A   + ++     +PD    VV+  +  S   L    ++
Sbjct: 22  NSVSWTLIVAAFARN-GHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLL 80

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            A     RL   D      +I+ + + +++  AR  F  M +K  V+W+A+I+GY   G 
Sbjct: 81  HAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGD 140

Query: 117 LDKAVELFKVAPVKS------------------------------------------VVA 134
              A+++++    KS                                           + 
Sbjct: 141 HRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIV 200

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I+ Y K G ++ A K+FD +  ++++ WN MI+GY +   A   L+L + M     
Sbjct: 201 QNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDP 260

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDAC 253
           +PN  +   +L  C++L  L+ G+ +H+ V +     D      L++MY KC   LE+A 
Sbjct: 261 KPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEAR 320

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           ++F  ++ +DV+TWN +I  Y Q+G+ + AL +F +M+ E + P+ IT   +L AC
Sbjct: 321 QVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSAC 376



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 47/278 (16%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G V  A  +F  +   N V+W  ++A +  N    + L   R M+  G+RP+ +  
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQ 260
              +  CS    L+ G+ +H ++ ++ L + D    T LI+MY +C DLE A K F E+ 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALLLACNHAGLVDL 317
           +K +VTWNA+I+GY+++G    AL+++  M     EGMKPD+ITF + L AC   G +  
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 318 GIQ-----------------------------------YFDSMVNDYGIAAKPDHYTCMV 342
           G +                                    FD + N   IA     +  M+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA-----WNTMI 236

Query: 343 DLLGRAGKLVEAVDLIKKM-PFKPQPAI--FGTLLSAC 377
               + G   +A++L ++M P  P+P +  F  LL+AC
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG + DA  +F  I+  + V+W  +++ +A++G   +AL  + +M  EG++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 302 FVALLLACN-----------HAGLVDLGIQYFD-----SMVNDYGIAAKPDHYTCMVDLL 345
           FV  +  C+           HA +++  +  FD     +++  Y      +      D +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 346 GRA-------------------GKLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLD 384
           G+                    G L    D++ K P   KP    F + L AC V    D
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVG--D 178

Query: 385 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 434
           +++   +    +    A+   VQ  L N+Y+     +   ++   +K  +V+
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVI 230


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/467 (46%), Positives = 292/467 (62%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + ++  Y   G +  A +LF   P KS+V+ TAM++ Y K G++D A  LFD M  ++ V
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGV 222

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WN MI GY +N    + L L R M+    +PN  ++ SVL  C  L +L+ G+ VH  +
Sbjct: 223 CWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 282

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             + +  +    T L+ MY KCG LEDA  +F +I  KDVV WN+MI GYA HG  ++AL
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           +LF  M   G+ P +ITF+ +L AC H+G V  G   F+ M ++YGI  K +HY CMV+L
Sbjct: 343 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 402

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG + +A +L+K M  +P P ++GTLL ACR+H ++ L E     L + N AN +G 
Sbjct: 403 LGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN-SGT 461

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           Y+ L+NIYAA+  WD VAR+R  MK++ V K PG S IEV   VHEF +G   HP+   I
Sbjct: 462 YILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEI 521

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +  L+E+   +K  GY P  +  LH +GE  KE+ L  HSEKLAIAFGLI    GT I++
Sbjct: 522 YMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKI 581

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH  TK IS I  R+I+VRD  RFHHF +G+CSCGDYW
Sbjct: 582 VKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 25/331 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  AQ+LFD +P+  +VS   ML+C      ++ AA   F  +  +D   WN MI G+
Sbjct: 173 GDVVSAQQLFDTMPEKSLVSLTAMLTC-YAKHGELDAARVLFDGMEERDGVCWNVMIDGY 231

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SV 132
            Q     +A  LF  M     + N V+  +++S   + G L+    +           +V
Sbjct: 232 TQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNV 291

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA++  Y K G ++ A  +FD++  K++V WN+MI GY  + ++++ L+L + M  +
Sbjct: 292 HVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRM 351

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------K 245
           G+ P   +   +L  C H   +  G  +   +      KD   + P I  Y C      +
Sbjct: 352 GLHPTNITFIGILSACGHSGWVTEGWDIFNKM------KDEYGIEPKIEHYGCMVNLLGR 405

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            G +E A +L   +    D V W  ++     HGK     ++ + + D+ +  +S T++ 
Sbjct: 406 AGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYIL 464

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           L       G  D G+    +M+ D G+  +P
Sbjct: 465 LSNIYAAVGNWD-GVARLRTMMKDSGVKKEP 494



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 16/296 (5%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y   G+LD +V LF      SV  WTA+I G+   G  + A   + +M T+ +       
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL----LGCSHLSSLQLGKQVHQLVFK 226
           +  ++    E G  L    + LG   +    + +L     G   +S+ QL        F 
Sbjct: 132 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQL--------FD 183

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           +   K   +LT +++ Y K G+L+ A  LF  ++ +D V WN MI GY Q+G   +AL L
Sbjct: 184 TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 243

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M     KP+ +T +++L AC   G ++ G ++  S + + GI       T +VD+  
Sbjct: 244 FRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYS 302

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPAN 400
           + G L +A  +  K+  K   A + +++    +H   +  L  F +M    L+P N
Sbjct: 303 KCGSLEDARLVFDKIDDKDVVA-WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 357



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 24/178 (13%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H ++F+  L         L   Y   G L+ +  LF   Q   V  W A+I G+A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-------HAGLVDLGIQYFDSMVNDYGI 331
             E+AL  + +M  +G++P++ TF ++L  C        H+  V LG   FDS       
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG---FDS------- 157

Query: 332 AAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
               D Y  T ++D+  R G +V A  L   MP K   ++   L    + H  LD A 
Sbjct: 158 ----DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK-HGELDAAR 210



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 18/215 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFD 60
           ++  V+  + L     + G L+DA+ +FDKI   DVV++N M+    ++  S + +  F 
Sbjct: 287 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 346

Query: 61  FFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
              R+ +  T  ++  ++S       + +  D+F  M ++  +      +  M++     
Sbjct: 347 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRA 406

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           G +++A EL K   ++   V W  ++      GK+ L EK+ + +  +NL      I   
Sbjct: 407 GHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI--L 464

Query: 174 VENSWAE----DGLKLLRMMI---GLGIRPNASSL 201
           + N +A     DG+  LR M+   G+   P  SS+
Sbjct: 465 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 499


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 351/617 (56%), Gaps = 50/617 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI-------- 48
           M  K  V+W +++AG+A Q G  K A +L  ++ +    PD V+   +L  +        
Sbjct: 206 MQHKDLVSWTTLVAGYA-QNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRI 264

Query: 49  ---------------LLNSDDVVAAFDF-----------FQRLPIKDTASWNTMISGFVQ 82
                          L+N  + +    F           F+ +  K   SWNTMI G  Q
Sbjct: 265 GRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQ 324

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYI----ECGQLDKAVELFKVAPV----KSVVA 134
                +A   FL M ++  V     + G +      G L++   + K+        +V  
Sbjct: 325 NGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSV 384

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             ++IS Y K  +VD+A  +F+ +   N VTWNAMI GY +N   ++ L L  MM   GI
Sbjct: 385 MNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGI 443

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +  +L  V+   +  S  +  K +H L  ++ +  +    T L+ MY KCG ++ A K
Sbjct: 444 KLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARK 503

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF  +Q + V+TWNAMI GY  HG G++ L LF++M+   +KP+ ITF++++ AC+H+G 
Sbjct: 504 LFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGF 563

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G+  F SM  DY +    DHY+ MVDLLGRAG+L +A + I++MP KP  ++ G +L
Sbjct: 564 VEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAML 623

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            AC++HK ++L E AA  LF L+P +  G +V LANIYA+   WD VA++R +M++  + 
Sbjct: 624 GACKIHKNVELGEKAAQKLFKLDP-DEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLH 682

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SW+E+   +H F SG   HPE   I+  L+ L   +K AGYVPD + ++H V E+
Sbjct: 683 KTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPD-SIHDVEED 741

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           VK+QLL  HSE+LAIAFGL+    GT + + KNLRVCGDCH  TKYIS +  REIIVRD 
Sbjct: 742 VKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDL 801

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFK+G+CSCGDYW
Sbjct: 802 RRFHHFKNGSCSCGDYW 818



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 18/316 (5%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A+  F+R+  KD  SW T+++G+ Q  +  +A  L L M E     +SV+  +++    +
Sbjct: 199 AYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVAD 258

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              L     +    F+      V    A++  Y K G   +A  +F  M +K +V+WN M
Sbjct: 259 MKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTM 318

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I G  +N  +E+       M+  G  P   ++  VLL C++L  L+ G  VH+L+ K  L
Sbjct: 319 IDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKL 378

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             + + +  LISMY KC  ++ A  +F  +++ + VTWNAMI GYAQ+G  ++AL LF  
Sbjct: 379 DSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCM 437

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLL 345
           M+ +G+K D  T V ++ A     L D  +      ++   + A  D+     T +VD+ 
Sbjct: 438 MQSQGIKLDCFTLVGVITA-----LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMY 492

Query: 346 GRAGKLVEAVDLIKKM 361
            + G +  A  L   M
Sbjct: 493 AKCGAIKTARKLFDMM 508



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 140/265 (52%), Gaps = 8/265 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--PEKNSV--SWSAMISGYIECGQL 117
           F+ + +K    ++ M+ G+ +  ++  A   FL M   E   V   ++ ++    E   L
Sbjct: 102 FEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDL 161

Query: 118 DKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            K  E+  +        ++   TA++S Y K  ++D A K+F+ M  K+LV+W  ++AGY
Sbjct: 162 KKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGY 221

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N  A+  L+L+  M   G +P++ +L S+L   + + +L++G+ +H   F+S      
Sbjct: 222 AQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLV 281

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY KCG    A  +F  ++ K VV+WN MI G AQ+G+ E+A   F KM DE
Sbjct: 282 NVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDE 341

Query: 294 GMKPDSITFVALLLACNHAGLVDLG 318
           G  P  +T + +LLAC + G ++ G
Sbjct: 342 GEVPTRVTMMGVLLACANLGDLERG 366



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 101/173 (58%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +IS + KFG    A ++F+ +  K  V ++ M+ GY +NS   D L     M+   +R
Sbjct: 83  TKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVR 142

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
                 + +L  C     L+ G+++H L+  +    +   +T ++S+Y KC  +++A K+
Sbjct: 143 LVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKM 202

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           F  +Q KD+V+W  +++GYAQ+G  ++AL+L  +M++ G KPDS+T V++L A
Sbjct: 203 FERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 328/543 (60%), Gaps = 13/543 (2%)

Query: 41  YNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           +N+ +  +L++      ++  A    QRL  +D  SW  MI+G+ Q    A+A  LF  M
Sbjct: 448 FNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEM 507

Query: 97  PEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKV 148
             +    +++ +S+ IS       L++  ++   + +    + +    A++S Y + G+ 
Sbjct: 508 ENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRA 567

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A   F+++  K+ ++WNA+I+G+ ++   E+ L++   M   G+  N  +  S +   
Sbjct: 568 QDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSAT 627

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           ++ ++++ GKQ+H ++ K+    +T A   LI++Y KCG +EDA + F E+  K+VV+WN
Sbjct: 628 ANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWN 687

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI+GY+QHG G +A+ LF++MK  G+ P+ +TFV +L AC+H GLV+ G+ YF SM  +
Sbjct: 688 AMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKE 747

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           +G+  KP+HY C+VDLLGRA  L  A + I++MP +P   I+ TLLSAC VHK +++ EF
Sbjct: 748 HGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEF 807

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           AA +L  L P ++A  YV L+N+YA   KWD   R R  MK+  V K PG SWIEV   +
Sbjct: 808 AARHLLELEPEDSA-TYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSI 866

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           H F  GDR+HP    I+E + +L +R    GYV D    L+ V +E K+     HSEKLA
Sbjct: 867 HAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLA 926

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGL+ +    PIRV KNLRVC DCH   K++S I  R I+VRD  RFHHF+ G CSC 
Sbjct: 927 VAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCK 986

Query: 569 DYW 571
           DYW
Sbjct: 987 DYW 989



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 215/470 (45%), Gaps = 51/470 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L DA++L  +I +      +++   L  I L   +V  A   F  +P  + + WN +I
Sbjct: 24  GSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVI 83

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA---------VELFKVAP 128
           SG + KK  ++   LF  M  +N     +  +  +      KA          ++     
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGF 143

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
             S +    +I  Y K G VDLA+ +F+ +  K+ V+W AMI+G  +N   ++ + L   
Sbjct: 144 GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQ 203

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M    + P     SSVL  C+ +   +LG+Q+H  + K  L  +T     L+++Y + G+
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L  A ++F ++ R+D +++N++ISG AQ G  ++AL+LF+KM+ + MKPD +T  +LL A
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 309 CNHAG--------------------------LVDLGIQYFD-SMVNDYGIAAKPDH---Y 338
           C   G                          L+DL ++ FD    ++Y +  + ++   +
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLW 383

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
             M+   G+ G L E+  +  +M  +   P    + ++L  C     LDL E     +  
Sbjct: 384 NVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIK 443

Query: 396 LN-PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYS 440
                N   C V L ++YA   + D    I   ++E +VV     + GY+
Sbjct: 444 SGFQFNVYVCSV-LIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYT 492



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 207/467 (44%), Gaps = 66/467 (14%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           +++AA   F ++  +D  S+N++ISG  Q+    +A  LF  M     + + V+ ++++S
Sbjct: 263 NLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLS 322

Query: 110 GYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G   K  +L     K+     ++   +++  Y+K   ++ A + F    T+N+V 
Sbjct: 323 ACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVL 382

Query: 166 WNAMIAGYVE-NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           WN M+  Y +  + +E     L+M I  G+ PN  +  S+L  C+ L +L LG+Q+H  V
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIE-GLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            KS    +    + LI MY K G+L+ A  +   ++ +DVV+W AMI+GY QH    +AL
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEAL 501

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-----YFDSMVNDYGIAAKPDHYT 339
           +LF +M+++G++ D+I F + + AC     ++ G Q     Y      D  I        
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG------N 555

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQP---------AIFGTLLSACRVHKRLDLAEFAA 390
            +V L  R G+  +A    +K+  K            A  G    A +V  +++ A   A
Sbjct: 556 ALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEA 615

Query: 391 MNLFNLNPANAAGCYVQ--------------------------LANIYAAMKKWDDVARI 424
            NLF    A +A                               L  +Y+     +D  R 
Sbjct: 616 -NLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKRE 674

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
              M E NVV     SW  + T   +   G     E VS+ E++K+L
Sbjct: 675 FFEMPEKNVV-----SWNAMITGYSQHGYG----SEAVSLFEEMKQL 712



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 158/402 (39%), Gaps = 115/402 (28%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           SVL     + G+L  A+ +  ++ + DVVS+  M++      D    A   FQ +  +  
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG-YTQHDLFAEALKLFQEMENQGI 512

Query: 71  ASWN-------------------------TMISGFVQKKNM-----------AKARDLFL 94
            S N                         + ISG+ +  ++            +A+D +L
Sbjct: 513 RSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYL 572

Query: 95  AMPE---KNSVSWSAMISGYIECGQLDKAVE-------------LFKVAPVKSVVAWTA- 137
           A  +   K+++SW+A+ISG+ + G  ++A++             LF      S  A TA 
Sbjct: 573 AFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTAN 632

Query: 138 -------------------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                                    +I+ Y K G ++ A++ F EMP KN+V+WNAMI G
Sbjct: 633 IKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG 692

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-------LSSLQLGKQVHQLVF 225
           Y ++ +  + + L   M  LG+ PN  +   VL  CSH       LS  +   + H LV 
Sbjct: 693 YSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752

Query: 226 KS--------------------------PLCKDTTALTPLISMYCKCGDLED---ACKLF 256
           K                           P+  D      L+S      ++E    A +  
Sbjct: 753 KPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 812

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LE++ +D  T+  + + YA  GK +   R    MKD G+K +
Sbjct: 813 LELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKE 854



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 34/229 (14%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GIR N  +   +  GC +  SL   K++H  +FKS    +    + LI +Y   G++++A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
            KLF +I   +V  WN +ISG        + L LF  M  E + PD  TF ++L AC+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 311 ----------HAGLVDLGIQ----YFDSMVNDYGIAAKPD---------------HYTCM 341
                     HA ++  G        + +++ Y      D                +  M
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 342 VDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE 387
           +  L + G+  EA+ L  +M      P P +F ++LSAC   +   L E
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGE 233


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 331/576 (57%), Gaps = 42/576 (7%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           P +V +N +L  +      +V A   F  +P +D  SWN M++G+ +   + +AR LF  
Sbjct: 118 PGIVIWNRLLR-MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELF------------------------------- 124
           M EK+S SW+AM++GY++  Q ++A+ L+                               
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236

Query: 125 ---------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                    +       V W++++  Y K G +D A  +FD++  K++V+W +MI  Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           +S   +G  L   ++G   RPN  + + VL  C+ L++ +LGKQVH  + +      + A
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA 356

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            + L+ MY KCG++E A  +     + D+V+W ++I G AQ+G+ ++AL+ FD +   G 
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGT 416

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           KPD +TFV +L AC HAGLV+ G+++F S+   + ++   DHYTC+VDLL R+G+  +  
Sbjct: 417 KPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLK 476

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
            +I +MP KP   ++ ++L  C  +  +DLAE AA  LF + P N    YV +ANIYAA 
Sbjct: 477 SVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV-TYVTMANIYAAA 535

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            KW++  ++R  M+E  V K PG SW E+    H F + D  HP    I E L+EL K+M
Sbjct: 536 GKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKM 595

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           K  GYVP     LH V +E KE+ L++HSEKLA+AF ++    GT I+VFKNLR C DCH
Sbjct: 596 KEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCH 655

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            A K+IS I KR+I VRD+TRFH F++G CSCGDYW
Sbjct: 656 GAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 42/294 (14%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-- 186
           V  +V W  ++  Y K G +  A K+FDEMP ++L +WN M+ GY E    E+  KL   
Sbjct: 117 VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176

Query: 187 ----------RMMIGL--------------------GIRPNASSLSSVLLGCSHLSSLQL 216
                      M+ G                       RPN  ++S  +   + +  ++ 
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK++H  + ++ L  D    + L+ MY KCG +++A  +F +I  KDVV+W +MI  Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV----NDYGIA 332
             +  +   LF ++     +P+  TF  +L AC      +LG Q    M     + Y  A
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA 356

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           +     + +VD+  + G +  A  ++   P KP    + +L+  C  + + D A
Sbjct: 357 S-----SSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEA 404



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 7/128 (5%)

Query: 182 GLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
           G KLLR    ++G   +P AS+  +++  CS   +L+ GK+VH+ +  S           
Sbjct: 66  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY KCG L DA K+F E+  +D+ +WN M++GYA+ G  E+A +LFD+M ++    D
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK----D 181

Query: 299 SITFVALL 306
           S ++ A++
Sbjct: 182 SYSWTAMV 189


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 332/574 (57%), Gaps = 16/574 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+ L     Q G+L+DA ++FD+     VVSY  +++    +   +  A   F  + +KD
Sbjct: 103 NTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG-YASRGYINNARKLFDEISVKD 161

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKN---------SVSWSAMISGYIECG-QLDK 119
             SWN MISG+V+  N  +A +L+  M + N         +V  +   SG IE G QL  
Sbjct: 162 VVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHS 221

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
            +E         +V    +I  Y K G+V+ A  LF  +  K++++WN +I G+   +  
Sbjct: 222 WIEDHGFGSNIKIV--NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLY 279

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALT 237
           ++ L L + M+  G  PN  ++ SVL  C+HL ++ +G+ +H  + K    +   ++ LT
Sbjct: 280 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT 339

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            LI MY KCGD+E A ++F  +  + + +WNAMI G+A HGK   A  LF KM+  G+ P
Sbjct: 340 SLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP 399

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D ITFV LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG  G   EA ++
Sbjct: 400 DDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEM 459

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I+ MP +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA   +
Sbjct: 460 IRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENP-GSYVLLSNIYATAGR 518

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           WD VA+IR  + +  + K PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  M+ 
Sbjct: 519 WDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEE 578

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
            G+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH A
Sbjct: 579 TGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 638

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           TK IS I KREII RD TR H  KDG  SC DYW
Sbjct: 639 TKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 118/251 (47%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   NL+ WN M  G+  NS +   LKL   MI LG+ PN+ S   +
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC----------- 253
           L  C+   +L  G+Q+H  V K     D    T LISMY + G LEDA            
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 254 --------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                               KLF EI  KDVV+WNAMISGY +    ++AL L+  M   
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            +KPD  T V ++ AC  +G ++LG Q   S + D+G  +       ++DL  + G++  
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 354 AVDLIKKMPFK 364
           A  L + +  K
Sbjct: 251 ACGLFQGLAKK 261


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/561 (41%), Positives = 334/561 (59%), Gaps = 23/561 (4%)

Query: 26  AQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASWN-------- 74
           AQ +FD   +PD   +N+M+   SC    SD+   +   +QR+ +  +A  N        
Sbjct: 68  AQIVFDGFDRPDTFLWNLMIRGFSC----SDEPERSLLLYQRM-LCSSAPHNAYTFPSLL 122

Query: 75  ---TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
              + +S F ++     A+   L   E +  + +++I+ Y   G    A  LF   P   
Sbjct: 123 KACSNLSAF-EETTQIHAQITKLGY-ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPD 180

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            V+W ++I GY+K GK+D+A  LF +M  KN ++W  MI+GYV+    ++ L+L   M  
Sbjct: 181 DVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQN 240

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + P+  SL++ L  C+ L +L+ GK +H  + K+ +  D+     LI MY KCG++E+
Sbjct: 241 SDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEE 300

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F  I++K V  W A+ISGYA HG G +A+  F +M+  G+KP+ ITF A+L AC++
Sbjct: 301 ALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSY 360

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLV+ G   F SM  DY +    +HY C+VDLLGRAG L EA   I++MP KP   I+G
Sbjct: 361 TGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWG 420

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL ACR+HK ++L E     L  ++P +  G YV  ANI+A  KKWD  A  R  MKE 
Sbjct: 421 ALLKACRIHKNIELGEEIGEILIAIDPYH-GGRYVHKANIHAMDKKWDKAAETRRLMKEQ 479

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHA 490
            V K+PG S I +    HEF +GDR HPE+  I  K + + ++++  GYVP+L E  L  
Sbjct: 480 GVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDL 539

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V ++ +E ++  HSEKLAI +GLIK   GT IR+ KNLRVC DCH+ TK IS I KR+I+
Sbjct: 540 VDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIV 599

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           +RD TRFHHF+DG CSCGDYW
Sbjct: 600 MRDRTRFHHFRDGKCSCGDYW 620



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 48/261 (18%)

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              +  N     S L  CS    L   KQ+H  + K+ L +D+ A+T  +S +C      
Sbjct: 7   SFSLEHNLYETMSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLS-FCISSTSS 62

Query: 251 D----ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           D    A  +F    R D   WN MI G++   + E++L L+ +M       ++ TF +LL
Sbjct: 63  DFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLL 122

Query: 307 LACN-----------HAGLVDLG----IQYFDSMVNDYGIAA-------------KPD-- 336
            AC+           HA +  LG    +   +S++N Y +               +PD  
Sbjct: 123 KACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD---LAEFAAMNL 393
            +  ++    +AGK+  A+ L +KM  K   AI  T + +  V   ++   L  F  M  
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEK--NAISWTTMISGYVQADMNKEALQLFHEMQN 240

Query: 394 FNLNPANAAGCYVQLANIYAA 414
            ++ P N     V LAN  +A
Sbjct: 241 SDVEPDN-----VSLANALSA 256


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/527 (42%), Positives = 317/527 (60%), Gaps = 42/527 (7%)

Query: 86   MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAP----------- 128
            +  AR +   MPE+N VSW+AMISGY + G   +A+ LF        AP           
Sbjct: 528  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587

Query: 129  ------------VKSVVAWTA----------MISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                        + S+V  T+          ++  Y K GK+  A ++FD +P +++V+ 
Sbjct: 588  CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 647

Query: 167  NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
             A+I+GY +    E+ L L R +   G+R N  + +SVL   S L++L  G+QVH  V +
Sbjct: 648  TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 707

Query: 227  SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
            + L         LI MY KCG L  + ++F  +  + V++WNAM+ GY++HG G +A+ L
Sbjct: 708  AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 767

Query: 287  FDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDL 344
            F  MK+E  +KPDS+TF+A+L  C+H G+ D G++ F  MVN   G   + +HY C+VDL
Sbjct: 768  FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 827

Query: 345  LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
             GRAG++ EA + IKKMPF+P  AI+G+LL ACRVH+ + + EF A  L  +   NA G 
Sbjct: 828  FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENA-GN 886

Query: 405  YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
            YV L+N+YA+  +WDDV  +R  MKE  V+K PG SWIE+   +H F + DR HP    +
Sbjct: 887  YVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEV 946

Query: 465  HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
              K++EL  ++K AGYVP+L   L+ V +E KE++L  HSEKLA+AFGLI  P GTP+R+
Sbjct: 947  FAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRI 1006

Query: 525  FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             KNLR+C DCH   K++S +  RE+ +RD  RFHH   GTCSCGDYW
Sbjct: 1007 IKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I  Y K   +  A ++ DEMP +N+V+W AMI+GY +  +A + L L   M+  G  
Sbjct: 516 TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA 575

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + ++VL  C+  S  QLG+Q+H LV K+         + L+ MY K G + +A ++
Sbjct: 576 PNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRV 635

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DVV+  A+ISGYAQ G  E+AL LF +++ EGM+ + +T+ ++L A +    +
Sbjct: 636 FDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 695

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMP 362
           D G Q     V+ + + AK   Y      ++D+  + G L  +  +   MP
Sbjct: 696 DHGRQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 741



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 2/178 (1%)

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           LL M I  G+        SVL  C   ++++ G++VH  + K+         T LI +Y 
Sbjct: 465 LLEMGI-QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYN 523

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KC  L DA ++  E+  ++VV+W AMISGY+Q G   +AL LF +M   G  P+  TF  
Sbjct: 524 KCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFAT 583

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +L +C  +    LG Q   S+V      +     + ++D+  +AGK+ EA  +   +P
Sbjct: 584 VLTSCTSSSGFQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  GK+ +A+ +FD +P+ DVVS   ++S    L  D+   A D F+RL  +
Sbjct: 617 SSLLDMYAKA-GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE--EALDLFRRLQRE 673

Query: 69  DT-------ASWNTMISGFVQKKNMAKARDLFL-AMPEKNSVSWSAMISGYIECGQLDKA 120
                    AS  T +SG     +  +     L A      V  +++I  Y +CG L  +
Sbjct: 674 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 733

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-----LVTWNAMIAGYVE 175
             +F   P ++V++W AM+ GY K G    A +LF  M  +N      VT+ A+++G   
Sbjct: 734 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 793

Query: 176 NSWAEDGLKLLRMMI 190
               + GL++   M+
Sbjct: 794 GGMEDRGLEIFYEMV 808



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-----SVSWSAMISGYIECGQ 116
           F  +P +   SWN M+ G+ +     +A +LF  M E+N     SV++ A++SG    G 
Sbjct: 737 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGM 796

Query: 117 LDKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAM 169
            D+ +E+F      K      +  +  ++  + + G+V+ A +   +MP +     W ++
Sbjct: 797 EDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSL 856

Query: 170 IA 171
           + 
Sbjct: 857 LG 858


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/542 (40%), Positives = 319/542 (58%), Gaps = 40/542 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS--------------- 109
           +  +WN M+SG+ + K   K++ LF+ M ++    NSV+   M+S               
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY 231

Query: 110 -----GYIE---------------CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
                G +E               CG++D+A  +F     + V++WT++++G+   G++D
Sbjct: 232 KYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQID 291

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
           LA K FD++P ++ V+W AMI GY+  +   + L L R M    ++P+  ++ S+L  C+
Sbjct: 292 LARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACA 351

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
           HL +L+LG+ V   + K+ +  DT     LI MY KCG++  A K+F E+  KD  TW A
Sbjct: 352 HLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTA 411

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           MI G A +G GE+AL +F  M +  + PD IT++ +L AC HAG+V+ G  +F SM   +
Sbjct: 412 MIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQH 471

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
           GI     HY CMVDLLGRAG+L EA ++I  MP KP   ++G+LL ACRVHK + LAE A
Sbjct: 472 GIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMA 531

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A  +  L P N A  YV L NIYAA K+W+++ ++R  M E  + K PG S +E+   V+
Sbjct: 532 AKQILELEPENGA-VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY 590

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           EF +GD+ HP+   I+ KL+ + + +  AGY PD       +GEE KE  L  HSEKLAI
Sbjct: 591 EFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAI 650

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           A+ LI    G  IR+ KNLR+C DCH   K +S    RE+IVRD TRFHHF+ G+CSC +
Sbjct: 651 AYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNN 710

Query: 570 YW 571
           +W
Sbjct: 711 FW 712



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 185/441 (41%), Gaps = 48/441 (10%)

Query: 31  DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           D + Q  V+++     C    S  ++ A   F  +P      WNTMI G+ +  +     
Sbjct: 38  DPLFQKRVIAF-----CCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGV 92

Query: 91  DLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVK-----SVVAWTAMISG 141
            ++L M   N      ++  ++ G+     L     L   A VK     ++    A I  
Sbjct: 93  SMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHA-VKHGFDSNLFVQKAFIHM 151

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           +     VDLA K+FD      +VTWN M++GY      +    L   M   G+ PN+ +L
Sbjct: 152 FSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTL 211

Query: 202 SSVLLGCSHLSSLQLGKQVH-------------------------------QLVFKSPLC 230
             +L  CS L  L+ GK ++                               Q VF +   
Sbjct: 212 VLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKN 271

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D  + T +++ +   G ++ A K F +I  +D V+W AMI GY +  +  +AL LF +M
Sbjct: 272 RDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREM 331

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           +   +KPD  T V++L AC H G ++LG ++  + ++   I         ++D+  + G 
Sbjct: 332 QMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGN 390

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLS-ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           + +A  + K+M  K +      ++  A   H    LA F+ M   ++ P       V  A
Sbjct: 391 VGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCA 450

Query: 410 NIYAAMKKWDDVARIRLSMKE 430
             +A M +      I ++M+ 
Sbjct: 451 CTHAGMVEKGQSFFISMTMQH 471



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 136/313 (43%), Gaps = 23/313 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  ++W S++ GFA   G++  A++ FD+IP+ D VS+  M+    L  +  + A  
Sbjct: 269 MKNRDVISWTSIVTGFA-NIGQIDLARKYFDQIPERDYVSWTAMIDG-YLRMNRFIEALA 326

Query: 61  FFQRLPIKDTASWN-TMISGFVQKKNMAKAR--DLFLAMPEKNSVS-----WSAMISGYI 112
            F+ + + +      TM+S      ++      +      +KNS+       +A+I  Y 
Sbjct: 327 LFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYF 386

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM----PTKNLVTWNA 168
           +CG + KA ++FK    K    WTAMI G    G  + A  +F  M     T + +T+  
Sbjct: 387 KCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIG 446

Query: 169 MIAGYVENSWAEDGLK-LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           ++         E G    + M +  GI+PN +    ++        L+   + H+++   
Sbjct: 447 VLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLE---EAHEVIVNM 503

Query: 228 PLCKDTTALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           P+  ++     L+   C+        E A K  LE++ ++   +  + + YA   + E  
Sbjct: 504 PVKPNSIVWGSLLGA-CRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENL 562

Query: 284 LRLFDKMKDEGMK 296
            ++   M + G+K
Sbjct: 563 RQVRKLMMERGIK 575


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/507 (43%), Positives = 324/507 (63%), Gaps = 16/507 (3%)

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVE------LFKVAP 128
           G+V+   +  + +LF AM   +S S     +A+++        D+ V       + K+  
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 129 VKSVVAWTAMISGYMKFGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            ++      M+  Y K G  DL  A K+FD M  +++V+WN+MIA Y +N  + + + L 
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 187 RMM--IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
             M  +G GI+ NA +LS+VLL C+H  ++Q GK++H  V +  L ++    T ++ MY 
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG +E A + F +I+ K++++W+AMI+GY  HG+G++AL +F +MK  G++P+ ITF++
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+HAGL+D G  ++++M  ++GI A  +HY CMVDLLGRAG L EA  LIK+M  K
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P  AI+G LLSACR+HK ++LAE +   LF L+ +N +G YV L+NIYA  + W DV RI
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN-SGYYVLLSNIYAEARMWKDVERI 527

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           RL +K   + K PGYS  E+   ++ F  GD+ HP+ + I+  L++L +RM+ AGYVP+ 
Sbjct: 528 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 587

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
              LH + EE KE  L  HSEKLA+AF L+     + I + KNLRVC DCH A K+I+ I
Sbjct: 588 GSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 647

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +REII+RD  RFHHFKDG CSC DYW
Sbjct: 648 TEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 123/247 (49%), Gaps = 22/247 (8%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMI---- 108
           FD  +R    D  SWN+MI+ + Q    A+A  L+  M       + N+V+ SA++    
Sbjct: 258 FDTMER----DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACA 313

Query: 109 -SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            +G I+ G+     ++ ++   ++V   T+++  Y K G+V++A + F ++  KN+++W+
Sbjct: 314 HAGAIQTGKRIHN-QVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWS 372

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AMI GY  +   ++ L++   M   G+RPN  +  SVL  CSH   L  G+  +  + + 
Sbjct: 373 AMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQE 432

Query: 228 -PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKA-- 283
             +         ++ +  + G L++A  L  E++ K D   W A++S    H   E A  
Sbjct: 433 FGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEM 492

Query: 284 --LRLFD 288
              RLF+
Sbjct: 493 SVKRLFE 499


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/503 (42%), Positives = 308/503 (61%), Gaps = 5/503 (0%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T + N  I G+     +  AR +F  MP +++VS+++MI GY   G +  A  LF+    
Sbjct: 46  TRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLA 105

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            + V WT+M++G+ + G V+ A ++F+EMP ++LV+WNAMI+G V N    + L L R M
Sbjct: 106 PTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWM 165

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  G  PN  ++ SVL  C+   +L+ GK VH  V K  L  D    T L+ MY KCG +
Sbjct: 166 MEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAV 225

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLA 308
           E A ++F  ++ ++  TWNAMI+G A +G   KAL +F +M+  G + PD +TFV +LLA
Sbjct: 226 ELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLA 285

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+HAG VD G ++F ++   YG+    +HY CMVDLL R+G L EA  LI +MP KP   
Sbjct: 286 CSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVV 345

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++  LL  CR+HK + +AE    N+ +   A  +G +V L+N+YAA+ +W+ V  +R +M
Sbjct: 346 VWRALLGGCRLHKNVKMAE----NVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTM 401

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           +   + K+PG S +E+   +HEF SGD+ HP    IH KL E+  RM+  GYV +     
Sbjct: 402 RSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVF 461

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
           + + +E KEQ L +HSEKLAIAFGLI  P    IR+ KNLR C DCH   K +S I  RE
Sbjct: 462 YDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHRE 521

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I+VRD  RFHHF+ G CSC D+W
Sbjct: 522 IVVRDRARFHHFRGGACSCNDFW 544



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 60/332 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+ + G+    G++ DA+ +FD +P+ D VS+N M+    + S DV +A   F+R+    
Sbjct: 50  NAFIQGYCSA-GRVTDARRVFDGMPRRDTVSFNSMIHGYAV-SGDVGSAQRLFERVLAPT 107

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---- 125
             +W +M++GF +  ++  AR +F  MPE++ VSW+AMISG +      +A+ LF+    
Sbjct: 108 PVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMME 167

Query: 126 --VAPVKSVVA----------------W-----------------TAMISGYMKFGKVDL 150
               P +  V                 W                 TA++  Y K G V+L
Sbjct: 168 EGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVEL 227

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSVLLGCS 209
           A ++F  +  +N  TWNAMI G   N ++   L + R M +   + P+  +   VLL CS
Sbjct: 228 ALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACS 287

Query: 210 HLSSLQLGKQVH---------QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           H   +  GK+           +L+ +   C        ++ +  + G L++A KL  E+ 
Sbjct: 288 HAGFVDAGKEHFYTIPQKYGVELILEHYAC--------MVDLLARSGHLQEAHKLITEMP 339

Query: 261 RK-DVVTWNAMISGYAQHGKGEKALRLFDKMK 291
            K DVV W A++ G   H   + A  +  +M+
Sbjct: 340 MKPDVVVWRALLGGCRLHKNVKMAENVISEME 371



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           LC  T      I  YC  G + DA ++F  + R+D V++N+MI GYA  G    A RLF+
Sbjct: 44  LCTRTN--NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFE 101

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           ++    + P  +T+ +++     AG V+   + F+ M     ++       C+ + L   
Sbjct: 102 RV----LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLP-- 155

Query: 349 GKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
              VEA+ L + M    F P      ++LSAC
Sbjct: 156 ---VEALCLFRWMMEEGFVPNRGTVVSVLSAC 184


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/534 (41%), Positives = 322/534 (60%), Gaps = 39/534 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           N +I+ +V+   + +A+ LF  MPE+N VSW+ MIS Y      D+A+ L          
Sbjct: 324 NILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVM 383

Query: 125 --------------KVAPVKSVVAW-------------TAMISGYMKFGKVDLAEKLFDE 157
                         ++  +K + +W             +A+I  Y K G++  A K+F E
Sbjct: 384 PNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFRE 443

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M T + V WN++IA + ++S  ++ L L + M  +G   + S+L+SVL  C+ LS L+LG
Sbjct: 444 MMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG 503

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +Q H  V K    +D      L+ MYCKCG LEDA  +F  + +KDV++W+ MI+G AQ+
Sbjct: 504 RQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQN 561

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G   +AL LF+ MK +G KP+ IT + +L AC+HAGLV+ G  YF SM N YGI    +H
Sbjct: 562 GFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREH 621

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CM+DLLGRA KL + V LI +M  +P    + TLL ACR  + +DLA +AA  +  L+
Sbjct: 622 YGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLD 681

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P +  G YV L+NIYA  K+W+DVA +R +MK+  + K PG SWIEV   +H F  GD+ 
Sbjct: 682 PQDT-GAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKS 740

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP++  I+ +L +   R+  AGYVPD  F L  +  E +E  L +HSEKLAI FG++  P
Sbjct: 741 HPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFP 800

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               IR++KNL++CGDCH+  K I+ +E+R I++RD  R+HHF+DG CSCGDYW
Sbjct: 801 KEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            + +L  M   G+  ++ + S ++  C    +++ GK+VH+ +F +     T     LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K   LE+A  LF ++  ++VV+W  MIS Y+     ++A+RL   M  +G+ P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F ++L AC    L DL  +   S +   G+ +     + ++D+  + G+L+EA+ + ++M
Sbjct: 389 FSSVLRACER--LYDL--KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLA 386
                  ++ ++++A   H   D A
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSDGDEA 468



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 116/272 (42%), Gaps = 46/272 (16%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G+L +A ++F +                ++  D VV              
Sbjct: 422 SALIDVYSKMGELLEALKVFRE----------------MMTGDSVV-------------- 451

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV- 129
             WN++I+ F Q  +  +A  L+ +M      +  + ++  +        +EL + A V 
Sbjct: 452 --WNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVH 509

Query: 130 -----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                + ++   A++  Y K G ++ A+ +F+ M  K++++W+ MIAG  +N ++ + L 
Sbjct: 510 VLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALN 569

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLI 240
           L   M   G +PN  ++  VL  CSH   +  G    + ++ L    P  +    +  L+
Sbjct: 570 LFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLL 629

Query: 241 SMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMI 271
               +   L+D  KL  E+    DVVTW  ++
Sbjct: 630 G---RAEKLDDMVKLIHEMNCEPDVVTWRTLL 658


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 334/576 (57%), Gaps = 42/576 (7%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           P +V +N +L  +      +V A   F  +P +D  SWN M++G+ +   + +AR+LF  
Sbjct: 120 PGIVIWNRILG-MYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDE 178

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKV---------------------APVKSV-- 132
           MPE++S SW+AM++GY++  Q ++A+ L+ +                     A +K +  
Sbjct: 179 MPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRR 238

Query: 133 -----------------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                            V W++++  Y K G +D A  +FD++  K++V+W +MI  Y +
Sbjct: 239 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFK 298

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           +S   +G  L   +IG   RPN  + S VL  C+ L++ +LG+QVH  + +      + A
Sbjct: 299 SSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFA 358

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            + LI MY KCG++E A  +     + D+V+  ++I GYAQ+GK ++AL+ FD +   G 
Sbjct: 359 SSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGT 418

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           KPD +TFV +L AC HAGLV+ G+++F S+   + +    DHYTC+VDLL R+G+  +  
Sbjct: 419 KPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLK 478

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
            ++ +MP KP   ++ ++L  C  +  +DLAE AA  LF + P N    YV +ANIYAA 
Sbjct: 479 SVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV-TYVTMANIYAAA 537

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            KW++  ++R  M+E  + K PG SW E+    H F + D  HP    I E L EL K+M
Sbjct: 538 GKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKM 597

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           K  GYVP     LH V +E KE+ L++HSEKLA+AF ++    GT I+VFKNLR C DCH
Sbjct: 598 KEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCH 657

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            A K+IS I KR+I +RD+TRFH F++G CSC DYW
Sbjct: 658 SAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 135/314 (42%), Gaps = 65/314 (20%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE------------- 175
           V  +V W  ++  Y K G +  A K+FDEMP +++ +WN M+ GY E             
Sbjct: 119 VPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDE 178

Query: 176 ------NSWA------------EDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQL 216
                  SW             E+ L L  +M  +   +PN  ++SS +   + +  ++ 
Sbjct: 179 MPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRR 238

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK++H  + ++ L  D    + L+ MY KCG +++A  +F +I  KDVV+W +MI  Y +
Sbjct: 239 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFK 298

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV----NDYGIA 332
             +  +   LF ++     +P+  TF  +L AC      +LG Q    M     + Y  A
Sbjct: 299 SSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFA 358

Query: 333 A------------------------KPD--HYTCMVDLLGRAGKLVEAV---DLIKKMPF 363
           +                        KPD    T ++    + GK  EA+   DL+ K   
Sbjct: 359 SSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGT 418

Query: 364 KPQPAIFGTLLSAC 377
           KP    F  +LSAC
Sbjct: 419 KPDHVTFVNVLSAC 432



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 7/128 (5%)

Query: 182 GLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
           G KLLR    ++G   +P AS+  +++  CS   +L+ GK+VH+ +  S           
Sbjct: 68  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 127

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           ++ MY KCG L DA K+F E+  +DV +WN M++GYA+ G  E+A  LFD+M +     D
Sbjct: 128 ILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPER----D 183

Query: 299 SITFVALL 306
           S ++ A++
Sbjct: 184 SYSWTAMV 191


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/534 (41%), Positives = 315/534 (58%), Gaps = 39/534 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVA 127
           N +I+ +V+   +  A  LF  MP++N +SW+ MIS Y +C    KA+EL        V 
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 128 P------------------------------VKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           P                                 V   +A+I  + K G+ + A  +FDE
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M T + + WN++I G+ +NS ++  L+L + M   G     ++L+SVL  C+ L+ L+LG
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            Q H  + K    +D      L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ+
Sbjct: 280 MQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  ++AL+LF++MK  G KP+ IT V +L AC+HAGL++ G  YF SM   YGI    +H
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CM+DLLG+AGKL +AV L+ +M  +P    + TLL ACRV + + LAE+AA  +  L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P +A G Y  L+NIYA  +KWD V  IR  M++  + K PG SWIEV   +H F  GD  
Sbjct: 458 PEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNS 516

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP++V + +KL +L  R+   GYVP+  F L  +  E  E  L  HSEKLA+AFGL+ +P
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLP 576

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +   IR+ KNLR+CGDCH   K  S +E R I++R   R+HHF+DG CSCGDYW
Sbjct: 577 IEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 47/269 (17%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTA 71
           FAK  G+ +DA  +FD++   D + +N ++     NS   V A + F+R+     I + A
Sbjct: 204 FAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGFIAEQA 261

Query: 72  SWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +  +++          +     + +   +++ +  +A++  Y +CG L+ A+ +F     
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           + V+ W+ MISG                                 +N ++++ LKL   M
Sbjct: 322 RDVITWSTMISG-------------------------------LAQNGYSQEALKLFERM 350

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCK 245
              G +PN  ++  VL  CSH   L+ G    + + +L    P+ +    +  L+    K
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLG---K 407

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISG 273
            G L+DA KL  E++   D VTW  ++  
Sbjct: 408 AGKLDDAVKLLNEMECEPDAVTWRTLLGA 436



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 51/212 (24%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------------- 49
           WNS++ GFA Q  +   A ELF ++ +   ++    L+ +L                   
Sbjct: 228 WNSIIGGFA-QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 50  --------LNS---------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
                   LN+           +  A   F ++  +D  +W+TMISG  Q     +A  L
Sbjct: 287 VKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 346

Query: 93  FLAMPEKNS---------VSWSAMISGYIECG--QLDKAVELFKVAPVKSVVAWTAMISG 141
           F  M    +         V ++   +G +E G        +L+ + PV+    +  MI  
Sbjct: 347 FERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDL 404

Query: 142 YMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
             K GK+D A KL +EM  + + VTW  ++  
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/667 (36%), Positives = 353/667 (52%), Gaps = 100/667 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP------DVVSYNIMLSCILLNSD- 53
           M V   V+WNS++  +AK  GK K A E+F K+         D+   N++  C  + +  
Sbjct: 188 MPVWDVVSWNSIIESYAKL-GKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRS 246

Query: 54  -------------------------DVVAAFDF-------FQRLPIKDTASWNTMISGFV 81
                                    D+ A F         F  +P+KD  SWN M++G+ 
Sbjct: 247 LGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYS 306

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGY-------------------------- 111
           Q      A  LF  M E+    + V+WSA ISGY                          
Sbjct: 307 QIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366

Query: 112 --------------------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
                               I C  +   ++L K       +    +I  Y K  KVD+A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIA 426

Query: 152 EKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLG 207
             +FD +  K  ++VTW  MI GY ++  A   L+LL  M       RPNA ++S  L+ 
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVA 486

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDV 264
           C+ L++L +GKQ+H    ++   ++   L     LI MY KCGD+ DA  +F  +  K+ 
Sbjct: 487 CASLAALSIGKQIHAYALRNQ--QNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNE 544

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           VTW ++++GY  HG GE+AL +F++M+  G K D +T + +L AC+H+G++D G++YF+ 
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M  D+G++  P+HY C+VDLLGRAG+L  A+ LI++MP +P P ++  LLS CR+H +++
Sbjct: 605 MKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVE 664

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           L E+AA  +  L  +N  G Y  L+N+YA   +W DV RIR  M+   + K PG SW+E 
Sbjct: 665 LGEYAAKKITEL-ASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEG 723

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
                 F  GD+ HP    I++ L +  +R+K  GYVP+  FALH V +E K+ LL  HS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLA+A+G++  P G  IR+ KNLRVCGDCH A  Y+S I   EII+RD++RFHHFK+G 
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGL 843

Query: 565 CSCGDYW 571
           CSC  YW
Sbjct: 844 CSCKGYW 850



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 17/271 (6%)

Query: 58  AFDFFQRLPIKDTA--SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGY 111
           A    +R P  D     WN++I  +       K    F  M   +S+SW+         +
Sbjct: 78  AVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLM---HSLSWTPDNYTFPFVF 134

Query: 112 IECGQL------DKAVELFKVAPVKS-VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
             CG++      D +  L +V    S V    A+++ Y + G +  A K+FDEMP  ++V
Sbjct: 135 KACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVV 194

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           +WN++I  Y +    +  L++   M    G RP+  +L +VL  C+ + +  LGKQ H  
Sbjct: 195 SWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGF 254

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
              S + ++      L+ MY K G +++A  +F  +  KDVV+WNAM++GY+Q G+ E A
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDA 314

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +RLF++M++E +K D +T+ A +      GL
Sbjct: 315 VRLFEQMQEEKIKMDVVTWSAAISGYAQRGL 345



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +IS Y+  G +  A  L    P  +  +  WN++I  Y  N  A   L    +M  L   
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   V   C  +SS++ G   H L   +    +      L++MY +CG L DA K+
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 314
           F E+   DVV+WN++I  YA+ GK + AL +F KM +E G +PD IT V +L  C   G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 315 VDLGIQYF-----DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             LG Q+        M+ +  +        C+VD+  + G + EA  +   MP K
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVG------NCLVDMYAKFGMMDEANTVFSNMPVK 293


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 361/654 (55%), Gaps = 100/654 (15%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------------ 49
           ++N+++A +AK+   L  A +LFD+IP+PD+VSYN ++S                     
Sbjct: 76  SFNAIIAAYAKESRPLI-AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREM 134

Query: 50  -------------------------LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                    L+S  V + FD +  +        N +++ + +  
Sbjct: 135 GLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVN-------NALLTYYGKNG 187

Query: 85  NMAKARDLFLAMPE-KNSVSWSAMISGYIECGQLDKA-------------VELFKVAPVK 130
           ++  A+ +F  M   ++ VSW++MI  Y +  +  KA             V++F +A V 
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 131 SVVAWTAMISGYMKF-----------------GKVDL----------AEKLFDEMPTKNL 163
           +       +SG ++F                 G +DL            K+F+E+   +L
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 164 VTWNAMIAGYVEN-SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           V WN M++GY +N  + ED L+  R M G+G RPN  S   V+  CS+LSS   GKQ+H 
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367

Query: 223 LVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
           L  KS +  +  ++   LI+MY KCG+L+DA +LF  +   + V+ N+MI+GYAQHG   
Sbjct: 368 LALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEM 427

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           ++L LF  M +  + P SITF+++L AC H G V+ G  YF+ M   + I  + +HY+CM
Sbjct: 428 ESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCM 487

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           +DLLGRAGKL EA +LI +MPF P    + +LL ACR H  ++LA  AA  +  L P+NA
Sbjct: 488 IDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNA 547

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 461
           A  YV L+N+YA+  +W++VA +R  M++  V K PG SWIEV   +H F + D  HP +
Sbjct: 548 AP-YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 606

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFAL----HAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
             I+E L+E+  +MK AGYVPD+ +AL       G E KE  L  HSEKLA+AFGLI   
Sbjct: 607 KEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGE-KEIRLGHHSEKLAVAFGLISTK 665

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            G P+ V KNLR+CGDCH A K+ISAI  REI VRD  RFH FK+G CSCGDYW
Sbjct: 666 DGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +CG+L  A + F+     +V ++ A+I+ Y K  +  +A +LFD++P  +LV++N +I
Sbjct: 53  YSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLI 112

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           + Y +       L L   M  +G+  +  +LS+V+  C     + L  Q+H +   S   
Sbjct: 113 SAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITAC--CDDVGLIGQLHSVAVSSGFD 170

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +    L++ Y K GDL+DA ++F  +   +D V+WN+MI  Y QH +G KAL LF +
Sbjct: 171 SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   G+  D  T  ++L A      +  G+Q+   ++   G        + ++DL  + G
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCG 289

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSA 376
             +     + +   +P   ++ T++S 
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSG 316



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C     L  GK +H L  KS +   T      I +Y KCG L  A K F +I   +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V ++NA+I+ YA+  +   A +LFD++ +    PD +++  L+ A    G     +  F 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPE----PDLVSYNTLISAYADCGETAPALGLFS 129

Query: 324 SM 325
            M
Sbjct: 130 GM 131


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/586 (39%), Positives = 342/586 (58%), Gaps = 17/586 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS---D 53
           M  K  V W++++AG++  RG  + A  L +++     +P+V+++N ++S +  +    D
Sbjct: 78  MPEKNVVGWSALIAGYSA-RGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALD 136

Query: 54  DVVAAFDFFQRLPIKDTASWNTMIS--GFVQKKNMAKARDLFL--AMPEKNSVSWSAMIS 109
            V A           D    +  +S  G V++ ++ K    ++  A    ++   +A+I 
Sbjct: 137 AVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALID 196

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVT 165
            Y +CG+ D+ V +F  +    V +  A+++G  +  +V  A  LF E   +    N+V+
Sbjct: 197 MYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVS 256

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W +++A  V+N    + + L R M  +G+ PN+ ++  VL   +++++L  G+  H    
Sbjct: 257 WTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSL 316

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +     D    + L+ MY KCG    A  +F  +  ++VV+WNAMI GYA HG    A++
Sbjct: 317 RKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQ 376

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF  M+    KPD +TF  +L AC+ AGL + G +YF+ M   +GI+ + +HY CMV LL
Sbjct: 377 LFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLL 436

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR+GKL EA DLI +MPF+P   I+G+LL +CRV+  + LAE AA  LF L P NA G Y
Sbjct: 437 GRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNA-GNY 495

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L+NIYA+ K WD V R+R  MK   + K  G SWIE+   VH   +GD  HP + +I 
Sbjct: 496 VLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAIT 555

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           EKL +L   M   G+ P  +F LH V E+ K+ +L  HSEKLA+A GLI    GTP+RV 
Sbjct: 556 EKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVI 615

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLR+CGDCH A K+IS+ E+REI VRDT RFHHFKDG CSCGDYW
Sbjct: 616 KNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 7/239 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK--- 161
           S+++  YI  G    A  +F   P K+VV W+A+I+GY   G  + A  L ++M +    
Sbjct: 56  SSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVE 115

Query: 162 -NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
            N++TWN +++G   +  A D +  L  M   G  P+A+ +S  L     +  + +GKQV
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQV 175

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  V K+    D   +T LI MY KCG  ++  ++F E    DV + NA+++G +++ + 
Sbjct: 176 HGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQV 235

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
            +AL LF +    G++ + +++ +++  C   G     +  F +M +   I  +P+  T
Sbjct: 236 SEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQS---IGVEPNSVT 291



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+   L S L  C    +  L + +H     S L +D    + L+  Y + G    A  +
Sbjct: 18  PDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           F  +  K+VV W+A+I+GY+  G  E A  L ++M+  G++P+ IT+  L+   N +G
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSG 132


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/487 (42%), Positives = 308/487 (63%), Gaps = 1/487 (0%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
            +A AR  F   P ++    + M++ Y+  G++ +A ++F     + +V+W  MI GY  
Sbjct: 100 EIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAV 159

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G V +A ++FD    ++  +W++MI+ Y +   +++ L+L R M   G+ P+  S+ SV
Sbjct: 160 RGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSV 219

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  CS + +L +G +VH+ V  + +  D    T L+ MY KCGD+E++ K+F  +  KDV
Sbjct: 220 LSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDV 279

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           +TW++MI G A HG G  AL LF +M  +G++P+ ITF+ +L+AC H GLV+ G +YF S
Sbjct: 280 LTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSS 339

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M + +G+  + +HY CMVDLLGRAG + EA++LI+ M FKP P I+ TLL ACR+HK ++
Sbjct: 340 MSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVE 399

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           +AE A   L  L+P  A G YV L+NIYA    W+ VA +R +++  N+ ++PG S IE 
Sbjct: 400 IAEEAMAKLKVLDPL-ADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEW 458

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
              VHEF SGDR HP +  I++ L+E+  R++ AGY P     L  + E+ K++ L  HS
Sbjct: 459 ENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHS 518

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLAIAFGL+  P  + +R+ KNLR C DCH A K IS    R++IVRD  RFHHF +G 
Sbjct: 519 EKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQ 578

Query: 565 CSCGDYW 571
           CSC DYW
Sbjct: 579 CSCKDYW 585



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 24/298 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +LA +   RG++ +A+++FD +   D+VS+N M+    +   DV  A + F     +D
Sbjct: 120 NVMLAAYV-ARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRG-DVGMAREIFDGTRDRD 177

Query: 70  TASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
             SW++MIS + + +   +A    R++ +A    + +S  +++S     G L    E+ +
Sbjct: 178 AFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHR 237

Query: 126 VAPVKSVVA----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
                 V       TA++  Y K G ++ + K+F  MP K+++TW++MI G   +    D
Sbjct: 238 FVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHD 297

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L L   MI  G++PN  +   VL+ C+H+  +  GK+     F S    D   + P + 
Sbjct: 298 ALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKK----YFSS--MSDVHGVVPRME 351

Query: 242 MY-C------KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMK 291
            Y C      + G +E+A +L   +  K D + W  ++     H   E A     K+K
Sbjct: 352 HYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLK 409


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 361/654 (55%), Gaps = 100/654 (15%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------------ 49
           ++N+++A +AK+   L  A +LFD+IP+PD+VSYN ++S                     
Sbjct: 76  SFNAIIAAYAKESRPLI-AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREM 134

Query: 50  -------------------------LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                    L+S  V + FD +  +        N +++ + +  
Sbjct: 135 GLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVN-------NALLTYYGKNG 187

Query: 85  NMAKARDLFLAMPE-KNSVSWSAMISGYIECGQLDKA-------------VELFKVAPVK 130
           ++  A+ +F  M   ++ VSW++MI  Y +  +  KA             V++F +A V 
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 131 SVVAWTAMISGYMKF-----------------GKVDL----------AEKLFDEMPTKNL 163
           +       +SG ++F                 G +DL            K+F+E+   +L
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 164 VTWNAMIAGYVEN-SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           V WN M++GY +N  + ED L+  R M G+G RPN  S   V+  CS+LSS   GKQ+H 
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS 367

Query: 223 LVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
           L  KS +  +  ++   LI+MY KCG+L+DA +LF  +   + V+ N+MI+GYAQHG   
Sbjct: 368 LALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEM 427

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           ++L LF  M +  + P SITF+++L AC H G V+ G  YF+ M   + I  + +HY+CM
Sbjct: 428 ESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCM 487

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           +DLLGRAGKL EA +LI +MPF P    + +LL ACR H  ++LA  AA  +  L P+NA
Sbjct: 488 IDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNA 547

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 461
           A  YV L+N+YA+  +W++VA +R  M++  V K PG SWIEV   +H F + D  HP +
Sbjct: 548 AP-YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 606

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFAL----HAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
             I+E L+E+  +MK AGYVPD+ +AL       G E KE  L  HSEKLA+AFGLI   
Sbjct: 607 KEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGE-KEIRLGHHSEKLAVAFGLISTK 665

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            G P+ V KNLR+CGDCH A K+ISAI  REI VRD  RFH FK+G CSCGDYW
Sbjct: 666 DGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +CG+L  A + F+     +V ++ A+I+ Y K  +  +A +LFD++P  +LV++N +I
Sbjct: 53  YSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLI 112

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           + Y +       L L   M  +G+  +  +LS+V+  C     + L  Q+H +   S   
Sbjct: 113 SAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITAC--CDDVGLIGQLHSVAVSSGFD 170

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +    L++ Y K GDL+DA ++F  +   +D V+WN+MI  Y QH +G KAL LF +
Sbjct: 171 SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   G+  D  T  ++L A      +  G+Q+   ++   G        + ++DL  + G
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCG 289

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSA 376
             +     + +   +P   ++ T++S 
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSG 316



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 32/144 (22%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG----------DLED-- 251
           +L  C     L  GK +H L  KS +   T      I +Y KCG          D+ D  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 252 -------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                              A +LF +I   D+V++N +IS YA  G+   AL LF  M++
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 293 EGMKPDSITFVALLLA-CNHAGLV 315
            G+  D  T  A++ A C+  GL+
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLI 157


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/569 (39%), Positives = 335/569 (58%), Gaps = 30/569 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WN +L+GF +  G  K+A  +F KI         + +S +L +  D            
Sbjct: 218 VSWNGILSGFNRS-GYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGD------------ 264

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
             +  +   +I G+V K+ + K + +            SAMI  Y + G +   + LF  
Sbjct: 265 -SEMLNMGRLIHGYVIKQGLLKDKCVI-----------SAMIDMYGKSGHVYGIISLFNQ 312

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDG 182
             +       A I+G  + G VD A ++F+    +    N+V+W ++IAG  +N    + 
Sbjct: 313 FEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L+L R M   G++PN  ++ S+L  C ++++L  G+  H    +  L  +    + LI M
Sbjct: 373 LELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDM 432

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG +  +  +F  +  K++V WN++++G++ HGK ++ + +F+ +    +KPD I+F
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            +LL AC   GL D G +YF  M  +YGI  + +HY+CMV+LLGRAGKL EA DLIK+MP
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F+P   ++G LL++CR+   +DLAE AA  LF+L P N  G YV L+NIYAA   W +V 
Sbjct: 553 FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN-PGTYVLLSNIYAAKGMWTEVD 611

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            IR  M+   + K PG SWI+V   V+   +GD+ HP++  I EK+ E+ K M+ +G+ P
Sbjct: 612 SIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRP 671

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           +L+FALH V E+ +EQ+L  HSEKLA+ FGL+  P GTP++V KNLR+CGDCH   K+IS
Sbjct: 672 NLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFIS 731

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +   REI +RDT RFHHFKDG CSCGD+W
Sbjct: 732 SYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 122/238 (51%), Gaps = 7/238 (2%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---- 161
           +M   Y+ CG++  A ++F     K VV  +A++  Y + G ++   ++  EM +     
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N+V+WN +++G+  + + ++ + + + +  LG  P+  ++SSVL        L +G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             V K  L KD   ++ +I MY K G +     LF + +  +    NA I+G +++G  +
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
           KAL +F+  K++ M+ + +++ +++  C   G     ++ F  M        KP+H T
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM---QVAGVKPNHVT 390



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 92/176 (52%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y  +   + A+ +   +P   + +++++I    +       + +   M   G+ P+
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           +  L ++   C+ LS+ ++GKQ+H +   S L  D      +  MY +CG + DA K+F 
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +  KDVVT +A++  YA+ G  E+ +R+  +M+  G++ + +++  +L   N +G
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/642 (36%), Positives = 349/642 (54%), Gaps = 82/642 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+ L     + G L DA+++FD +P   V ++N M+S   + S+    AF  FQR+  + 
Sbjct: 48  NTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI-SERSGEAFFIFQRMQHEG 106

Query: 69  ---DTASWNTMISGFVQKKNMAKAR-------------DLFLA----------------- 95
              D  ++ +++   V  +N+   +             DLF+                  
Sbjct: 107 ERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAA 166

Query: 96  -----MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYM--- 143
                M +KN ++WSA+I+ + + G   +A+  F++   + +    V + ++++G+    
Sbjct: 167 QVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPS 226

Query: 144 ----------------------------------KFGKVDLAEKLFDEMPTKNLVTWNAM 169
                                             + G++D+AE +  EM  + +  WN +
Sbjct: 227 GLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVL 286

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY  +  + + L+  + +    I  +  +  SVL  C+  +SL  GK +H    +  L
Sbjct: 287 INGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGL 346

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D      L +MY KCG +E+A ++F  +  +  V+WN M+  YAQHG+ E+ L+L  K
Sbjct: 347 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK 406

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+ EG+K + ITFV++L +C+HAGL+  G QYF S+ +D GI  K +HY C+VDLLGRAG
Sbjct: 407 MEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAG 466

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           KL EA   I KMP +P+   + +LL ACRVHK LD  + AA  L  L+P N++   V L+
Sbjct: 467 KLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVV-LS 525

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIY+    W + A++R +M    V K+PG S I+V   VHEFR  D  HP    I++K++
Sbjct: 526 NIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVE 585

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           EL   M+ AGYVPD +  LH V EE KE LL +HSEKLAIAFGLI  P  + + +FKNLR
Sbjct: 586 ELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLR 645

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH ATK+IS I  REI+VRD  RFHHF+DG+CSC DYW
Sbjct: 646 VCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 68/121 (56%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G++ N  +  +VL       +L+ GK +H  V +S    D    T L++ Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L DA K+F  +  + V TWN+MIS Y+   +  +A  +F +M+ EG + D +TF+++L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 309 C 309
           C
Sbjct: 121 C 121


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/620 (37%), Positives = 345/620 (55%), Gaps = 52/620 (8%)

Query: 1   MNVKTTVNWNSVLAGFAK---QRGKLKDAQELFDKIPQ---PDVVSYNIML-SCILLN-- 51
           M  KT V WN+++AG+++    RG LK  Q++  K P+   PD ++++  L +C ++   
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 52  ----------------SDDVV---------------AAFDFFQRLPIKDTASWNTMISGF 80
                           SD +V               +A   F RL  +D  +WNTMISG+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV----KSV 132
            ++    +A +LF  M    P+ N V++  +++       L++   + +          +
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDL 299

Query: 133 VAWTAMISGYMK-FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V    +++ Y K    ++ A ++F+ + T++++TWN +I  YV+   A+D L + + M  
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + PN  +LS+VL  C+ L + + GK VH L+       D      L++MY +CG L+D
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
              +F  I+ K +V+W+ +I+ YAQHG     L  F ++  EG+  D +T V+ L AC+H
Sbjct: 420 TVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSH 479

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            G++  G+Q F SMV D+G+A    H+ CMVDLL RAG+L  A +LI  MPF P    + 
Sbjct: 480 GGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWT 539

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           +LLS C++H     A   A  LF L   +       L+N+YA   +WDDV + R      
Sbjct: 540 SLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRR 596

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
              K PG S+IE+   VHEF +GD+ HPE   I  ++K L K+MK AGYVPD+   LH V
Sbjct: 597 AARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNV 656

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KEQ+L +HSEKLAIA+GLI  P GTP+ + KNLR C DCH A K+IS I  R+I+V
Sbjct: 657 KEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVV 716

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD+TRFHHF++G+CSC DYW
Sbjct: 717 RDSTRFHHFENGSCSCKDYW 736



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI------ 108
           V  A   F  +   ++ SW  +++ F +  +  +A   +  M  +      AM       
Sbjct: 8   VADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGV 67

Query: 109 ---SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
              S  ++ GQL  A+ L        ++  TA+I+ Y +   ++LA K FDEM  K LVT
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           WNA+IAGY  N      LK+ + M+     G++P+A + SS L  CS +  +  G+++  
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEA 187

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
               S    D+     LI+MY KCG LE A K+F  ++ +DV+ WN MISGYA+ G   +
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNH 311
           AL LF +M     KP+ +TF+ LL AC +
Sbjct: 248 ALELFQRMGPNDPKPNVVTFIGLLTACTN 276



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 155/314 (49%), Gaps = 16/314 (5%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFDFFQRLPI 67
           V  G       LK  Q L   I +  ++ ++I+L   L+       D+  A   F  +  
Sbjct: 63  VAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGK 122

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------NSVSWSAMISGYIECGQLDKA 120
           K   +WN +I+G+ +  +   A  ++  M  K       +++++S+ +      G + + 
Sbjct: 123 KTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQG 182

Query: 121 --VELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
             +E   VA       +   A+I+ Y K G ++ A K+FD +  ++++ WN MI+GY + 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
             A   L+L + M     +PN  +   +L  C++L  L+ G+ +H+ V +     D    
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIG 302

Query: 237 TPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
             L++MY KC   LE+A ++F  ++ +DV+TWN +I  Y Q+G+ + AL +F +M+ E +
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 296 KPDSITFVALLLAC 309
            P+ IT   +L AC
Sbjct: 363 APNEITLSNVLSAC 376



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 133/273 (48%), Gaps = 37/273 (13%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G V  A  +F  +   N V+W  ++A +  N    + L   R M+  G+RP+ +  
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQ 260
              +  CS    L+ G+ +H ++ ++ L + D    T LI+MY +C DLE A K F E+ 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALLLACNHAGLVDL 317
           +K +VTWNA+I+GY+++G    AL+++  M     EGMKPD+ITF + L AC+  G +  
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 318 GIQ---------------YFDSMVNDYGIAAKPDH---------------YTCMVDLLGR 347
           G +                 ++++N Y      +                +  M+    +
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 348 AGKLVEAVDLIKKM-PFKPQPAI--FGTLLSAC 377
            G   +A++L ++M P  P+P +  F  LL+AC
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG + DA  +F  I+  + V+W  +++ +A++G   +AL  + +M  EG++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 302 FVALLLACN-----------HAGLVDLGIQYFD-----SMVNDYGIAAKPDHYTCMVDLL 345
           FV  +  C+           HA +++  +  FD     +++  Y      +      D +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 346 GRA-------------------GKLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLD 384
           G+                    G L    D++ K P   KP    F + L AC V    D
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVG--D 178

Query: 385 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 434
           +++   +    +    A+   VQ  L N+Y+     +   ++   +K  +V+
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVI 230


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/614 (39%), Positives = 349/614 (56%), Gaps = 51/614 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAF 59
           M ++  V+WNS+++G   + G +  A ++FD++P+  VVS+  M++ C      D   A 
Sbjct: 92  MPLRDVVSWNSMISGCV-ECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVD--QAE 148

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F ++P+KD A+WN M+ G++Q   +  A  LF  MP KN +SW+ MI G  +  +  +
Sbjct: 149 RLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGE 208

Query: 120 AVELFKV----------------------AP------------VKSVVAW-----TAMIS 140
           A+ LFK                       AP            +KS   +      ++I+
Sbjct: 209 ALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLIT 268

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y    + + + K+F EM  + +  W A+++GY  N   ED L +   MI   I PN S+
Sbjct: 269 LYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQST 328

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            +S L  CS L +L  GK++H +  K  L         L+ MY   G++ DA  +F+EI 
Sbjct: 329 FASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIF 388

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-- 318
           +K +V+WN++I G AQHG+G+ A  +F +M     +PD ITF  LL AC+H G +  G  
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRK 448

Query: 319 -IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
              Y  S +N   I  K  HYTCMVD+LGR G+L EA  LI+ M  KP   ++  LLSAC
Sbjct: 449 LFYYISSGLNH--IDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSAC 506

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R+H  +D  E AA  +FNL+  ++A  YV L+NIYA+  +W  V+++R+ MK+  ++K P
Sbjct: 507 RMHSDVDRGEKAAAAIFNLDSKSSAA-YVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKP 565

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G SW+ +    HEF SGDR  P  + I EKL+ L +++K  GYVPD   ALH V +E KE
Sbjct: 566 GSSWVVIRGKKHEFFSGDR--PHCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKE 623

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           ++L +HSE+LAIAFGLI    G+ + V KNLRVC DCH   K IS +   +I++RD TRF
Sbjct: 624 EMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRF 683

Query: 558 HHFKDGTCSCGDYW 571
           HHFK+G CSCGDYW
Sbjct: 684 HHFKNGMCSCGDYW 697



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 206/379 (54%), Gaps = 5/379 (1%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           +L +A+E+FD++P P V  Y  M+S     S+ +V A + F  +P++D  SWN+MISG V
Sbjct: 50  RLDEAREVFDQVPSPHVSLYTKMISG-YTRSNRLVDALNLFDEMPLRDVVSWNSMISGCV 108

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +  ++  A  +F  MPE++ VSW+AM++G    G +D+A  LF   PVK + AW AM+ G
Sbjct: 109 ECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHG 168

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y++FGKVD A KLF +MP KN+++W  MI G  +N  + + L L + M+   I+  + + 
Sbjct: 169 YLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTF 228

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           + V+  C++  +  +G QVH  + KS    +      LI++Y  C   ED+ K+F E+  
Sbjct: 229 TCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVH 288

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           + V  W A++SGY+ + K E AL +F +M    + P+  TF + L +C+  G +D G + 
Sbjct: 289 EKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEI 348

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
               V   G+         +V +   +G + +AV +  ++ FK     + +++  C  H 
Sbjct: 349 HGVAVK-LGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQHG 406

Query: 382 RLDLAE--FAAMNLFNLNP 398
           R   A   F  M   N  P
Sbjct: 407 RGKWAFVIFGQMIRLNKEP 425


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/609 (38%), Positives = 346/609 (56%), Gaps = 49/609 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLN------------- 51
           WN+++  +++ RG + +A  L+ ++     +PD  +Y ++L     +             
Sbjct: 73  WNAMIIAYSR-RGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQA 131

Query: 52  -----SDDVVA----------------AFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
                 DDV                  A   F ++  +D   W TMI+G  Q     +A 
Sbjct: 132 VDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAV 191

Query: 91  DLFLAMPEKNSVSWSAMISGYIE-CGQLDKAV-------ELFKVAPVKSVVAWTAMISGY 142
           D++  M +K       ++ G I+ C  L  +         + +   +  V+  T+++  Y
Sbjct: 192 DIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMY 251

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G ++LA  +F  M  KN+++W+A+I+G+ +N +A + L+L+  M   G +P++ SL 
Sbjct: 252 AKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLV 311

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           SVLL CS +  L+LGK VH  + +  L  D  + T +I MY KCG L  A  +F +I  +
Sbjct: 312 SVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR 370

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D ++WNA+I+ Y  HG GE+AL LF +M++  +KPD  TF +LL A +H+GLV+ G  +F
Sbjct: 371 DSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWF 430

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
             MVN+Y I     HY CMVDLL RAG++ EA +LI+ M  +P  AI+  LLS C  H +
Sbjct: 431 SIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGK 490

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
             + E AA  +  LNP +  G Y  ++N +A  ++WD+VA +R  MK+  + K+PGYS +
Sbjct: 491 FLIGEMAAKKVLELNPDDP-GIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVM 549

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           EV   +H F   D+ H +   I + L +L+  MK  GYVP  EF LH + EEVKE++L  
Sbjct: 550 EVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCN 609

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSE+LAIAFGL+    GT + + KNLRVCGDCH ATK+IS I  REI+VRD  RFHHFKD
Sbjct: 610 HSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKD 669

Query: 563 GTCSCGDYW 571
           G CSCGDYW
Sbjct: 670 GVCSCGDYW 678



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 177/363 (48%), Gaps = 23/363 (6%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           + +A   F + P     +WN MI  + ++  M +A  L+  M  +    +S +++ ++  
Sbjct: 55  IESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKA 114

Query: 111 YIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                 L    E ++ A  +     V    A+++ Y K GK+D A ++FD+M  ++LV W
Sbjct: 115 CTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCW 174

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
             MI G  +N  A + + + R M    +  +   +  ++  C+ L   ++G  +H  + +
Sbjct: 175 TTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIR 234

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             +  D    T L+ MY K G LE A  +F  +  K+V++W+A+ISG+AQ+G    AL+L
Sbjct: 235 KDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQL 294

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC-----M 341
              M+  G KPDS++ V++LLAC+  G + LG          +G   +  H+ C     +
Sbjct: 295 VVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSV-------HGYIVRRLHFDCVSSTAV 347

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNPA 399
           +D+  + G L  A  +  ++ F+   + +  ++++  +H   +  L+ F  M   N+ P 
Sbjct: 348 IDMYSKCGSLSFARTVFDQISFRDSIS-WNAIIASYGIHGSGEEALSLFLQMRETNVKPD 406

Query: 400 NAA 402
           +A 
Sbjct: 407 HAT 409



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 116/227 (51%), Gaps = 1/227 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y + G ++ A ++FD+ P   +  WNAMI  Y       + L L   M   G+RP+
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           +S+ + VL  C+    L+ G++  +         D      ++++Y KCG +++A ++F 
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++ R+D+V W  MI+G AQ+G+  +A+ ++ +M  + ++ D +  + L+ AC   G   +
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           G+     M+    I       T +VD+  + G L  A  + ++M +K
Sbjct: 225 GLSIHGYMIRK-DIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYK 270



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 1/143 (0%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           ++H L+  + +     +   LI  Y + G +E A ++F +  +  V  WNAMI  Y++ G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
              +AL L+ +M  EG++PDS T+  +L AC  +  +  G + +   V D G        
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAV-DQGYGDDVFVG 143

Query: 339 TCMVDLLGRAGKLVEAVDLIKKM 361
             +++L  + GK+ EA+ +  KM
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDKM 166



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 52/221 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCI------- 48
           M  K  ++W+++++GFA Q G   +A +L   +     +PD VS  +++L+C        
Sbjct: 267 MLYKNVISWSALISGFA-QNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKL 325

Query: 49  ---------------LLNSDDVVAAFD----------FFQRLPIKDTASWNTMISGFVQK 83
                           ++S  V+  +            F ++  +D+ SWN +I+ +   
Sbjct: 326 GKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIH 385

Query: 84  KNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKA-------VELFKVAPVKSV 132
            +  +A  LFL M E N      ++++++S +   G ++K        V  +K+ P  S 
Sbjct: 386 GSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQP--SE 443

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
             +  M+    + G+V+ A++L + M T+  +  W A+++G
Sbjct: 444 KHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSG 484


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 323/520 (62%), Gaps = 11/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQ 116
           F  +P++D  SWNT+I+GF Q     +A D+   M +      +S + S+++  + E   
Sbjct: 183 FDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVD 242

Query: 117 LDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           ++K  E+   A        V   +++I  Y K  +++ + + F  +P K+ ++WN++IAG
Sbjct: 243 VNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAG 302

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+N   + GL   R M+   ++P A S SSV+  C+HL++L LG+Q+H  + +     +
Sbjct: 303 CVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDN 362

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               + L+ MY KCG+++ A  +F  I ++D+V W A+I G A HG    A+ LF+ M +
Sbjct: 363 EFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLE 422

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G++P  + F+A+L AC+HAGLVD G +YF+SM  D+GIA   +HY  + DLLGRAG+L 
Sbjct: 423 DGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLE 482

Query: 353 EAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           EA D I  M   +P  +++  LL+ACR HK ++LAE     L +++  N  G YV ++NI
Sbjct: 483 EAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENM-GAYVLMSNI 541

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           Y+A ++W D AR+R+ M++  + K P  SWIEVG  VH F +GD+ HP    I++ L  L
Sbjct: 542 YSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVL 601

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            ++M+  GYV D    LH V EE+K +LL  HSE+LAIA+G+I    GT IRV KN+RVC
Sbjct: 602 LEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVC 661

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH A K+I+ I  REI VRD +RFHHFK+G+CSCGDYW
Sbjct: 662 ADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 148/296 (50%), Gaps = 23/296 (7%)

Query: 136 TAMISGYMKF---GKV------------DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            A+I+ Y KF   GKV            D  +K+FD MP +++V+WN +IAG+ +N    
Sbjct: 149 NALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYV 208

Query: 181 DGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + L ++R M   G ++P++ +LSS+L   +    +  GK++H    ++    D    + L
Sbjct: 209 EALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSL 268

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I MY KC  LE + + F  + RKD ++WN++I+G  Q+G+ ++ L  F +M  E +KP +
Sbjct: 269 IDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMA 328

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           ++F +++ AC H   + LG Q    +V   G        + +VD+  + G +  A  +  
Sbjct: 329 VSFSSVIPACAHLTALSLGRQLHGCIVR-LGFDDNEFIASSLVDMYAKCGNIKMARYVFD 387

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF-NLNPANAAGCYVQLANIYAA 414
           ++  +   A +  ++  C +H         A++LF N+       CYV    +  A
Sbjct: 388 RIDKRDMVA-WTAIIMGCAMHGH----ALDAVSLFENMLEDGVRPCYVAFMAVLTA 438



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 61/363 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLSCILLNSD-- 53
           M V+  V+WN+V+AGFA Q G   +A ++  ++      +PD  + + +L     + D  
Sbjct: 186 MPVRDVVSWNTVIAGFA-QNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVN 244

Query: 54  --------DVVAAFD------------------------FFQRLPIKDTASWNTMISGFV 81
                    V   FD                         F  LP KD  SWN++I+G V
Sbjct: 245 KGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCV 304

Query: 82  QKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELF----KVAPVKSVV 133
           Q     +    F  M ++N    +VS+S++I        L    +L     ++    +  
Sbjct: 305 QNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEF 364

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             ++++  Y K G + +A  +FD +  +++V W A+I G   +  A D + L   M+  G
Sbjct: 365 IASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDG 424

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDL 249
           +RP   +  +VL  CSH   +  G +    + +    +P  +   A+  L+    + G L
Sbjct: 425 VRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLG---RAGRL 481

Query: 250 EDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           E+A      ++  +     W+ +++    H    K++ L +K+ D+ +  DS    A +L
Sbjct: 482 EEAYDFISNMRGVQPTGSVWSILLAACRAH----KSVELAEKVLDKLLSVDSENMGAYVL 537

Query: 308 ACN 310
             N
Sbjct: 538 MSN 540



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W+++I  Y  +S           M  L + PN     S+L   + L   +L   +H    
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 226 KSPLCKDTTALTPLISMYCK---CGDLEDA----------C--KLFLEIQRKDVVTWNAM 270
           +  L  D      LI+ Y K    G + D           C  K+F  +  +DVV+WN +
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 271 ISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALL 306
           I+G+AQ+G   +AL +  +M   G +KPDS T  ++L
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSIL 234


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/551 (40%), Positives = 339/551 (61%), Gaps = 22/551 (3%)

Query: 35  QPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           + D ++ N++++    C L+ S     A   F  +P++   SWNTM+    Q  +  KA 
Sbjct: 79  RADTITSNMLMNMYSKCGLVES-----ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKAL 133

Query: 91  DLFLAMPEKNSVSWSAMISGYI----------ECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            LF+ M ++ +      +S  +          EC QL       K A   +V   TA++ 
Sbjct: 134 VLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFA--LKTALDSNVFVGTALLD 191

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G V  A  +F+ MP ++ VTW++M+AGYV+N   E+ L L      +G+  N  +
Sbjct: 192 VYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFT 251

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +SS L  C+  ++L  GKQV  +  K+ +  +   ++ LI MY KCG +E+A  +F  ++
Sbjct: 252 ISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE 311

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K+VV WNA++SG+++H +  +A+  F+KM+  G+ P+ IT++++L AC+H GLV+ G +
Sbjct: 312 EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRK 371

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           YFD M+  + ++    HY+CMVD+LGRAG L EA D I +MPF    +++G+LL++CR++
Sbjct: 372 YFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIY 431

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           + L+LAE AA +LF + P N AG +V L+NIYAA  +W++VAR R  +KE+   K  G S
Sbjct: 432 RNLELAEVAAKHLFEIEPHN-AGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKS 490

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           WIE+   VH F  G+R HP +V I+ KL++L   MK  GY    E  LH V E  K++LL
Sbjct: 491 WIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELL 550

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLA+ FG++ +P G PIR+ KNLR+CGDCH   K  S+I +REIIVRDT RFHHF
Sbjct: 551 RHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHF 610

Query: 561 KDGTCSCGDYW 571
           K+G CSCG++W
Sbjct: 611 KNGYCSCGEFW 621



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 2/261 (0%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ +V      +    +++ Y K G V+ A KLFDEMP ++LV+WN M+  + +N   E 
Sbjct: 72  QIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEK 131

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L L   M   G   +  ++SSV+  C+    +   KQ+H    K+ L  +    T L+ 
Sbjct: 132 ALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLD 191

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y KCG ++DA  +F  +  +  VTW++M++GY Q+   E+AL LF + +  G++ +  T
Sbjct: 192 VYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFT 251

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             + L AC     +  G Q   ++    GI +     + ++D+  + G + EA  +   +
Sbjct: 252 ISSALSACAARAALIEGKQ-VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSV 310

Query: 362 PFKPQPAIFGTLLSACRVHKR 382
             K    ++  +LS    H R
Sbjct: 311 EEK-NVVLWNAILSGFSRHVR 330



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-------------GKQVHQ 222
           NS++     LL +   +  RP++  L  V +  +H+S LQ              G   H 
Sbjct: 12  NSFSLQVRHLLAISNAMAERPSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHA 71

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            + +  L  DT     L++MY KCG +E A KLF E+  + +V+WN M+  + Q+G  EK
Sbjct: 72  QIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEK 131

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLAC 309
           AL LF +M+ EG      T  +++ AC
Sbjct: 132 ALVLFMQMQKEGTSCSEFTVSSVVCAC 158


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/551 (40%), Positives = 339/551 (61%), Gaps = 22/551 (3%)

Query: 35  QPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           + D ++ N++++    C L+ S     A   F  +P++   SWNTM+    Q  +  KA 
Sbjct: 52  RADTITSNMLMNMYSKCGLVES-----ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKAL 106

Query: 91  DLFLAMPEKNSVSWSAMISGYI----------ECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            LF+ M ++ +      +S  +          EC QL       K A   +V   TA++ 
Sbjct: 107 VLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFA--LKTALDSNVFVGTALLD 164

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G V  A  +F+ MP ++ VTW++M+AGYV+N   E+ L L      +G+  N  +
Sbjct: 165 VYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFT 224

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +SS L  C+  ++L  GKQV  +  K+ +  +   ++ LI MY KCG +E+A  +F  ++
Sbjct: 225 ISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE 284

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K+VV WNA++SG+++H +  +A+  F+KM+  G+ P+ IT++++L AC+H GLV+ G +
Sbjct: 285 EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRK 344

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           YFD M+  + ++    HY+CMVD+LGRAG L EA D I +MPF    +++G+LL++CR++
Sbjct: 345 YFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIY 404

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           + L+LAE AA +LF + P N AG +V L+NIYAA  +W++VAR R  +KE+   K  G S
Sbjct: 405 RNLELAEVAAKHLFEIEPHN-AGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKS 463

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           WIE+   VH F  G+R HP +V I+ KL++L   MK  GY    E  LH V E  K++LL
Sbjct: 464 WIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELL 523

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLA+ FG++ +P G PIR+ KNLR+CGDCH   K  S+I +REIIVRDT RFHHF
Sbjct: 524 RHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHF 583

Query: 561 KDGTCSCGDYW 571
           K+G CSCG++W
Sbjct: 584 KNGYCSCGEFW 594



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 2/261 (0%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ +V      +    +++ Y K G V+ A KLFDEMP ++LV+WN M+  + +N   E 
Sbjct: 45  QIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEK 104

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L L   M   G   +  ++SSV+  C+    +   KQ+H    K+ L  +    T L+ 
Sbjct: 105 ALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLD 164

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y KCG ++DA  +F  +  +  VTW++M++GY Q+   E+AL LF + +  G++ +  T
Sbjct: 165 VYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFT 224

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             + L AC     +  G Q   ++    GI +     + ++D+  + G + EA  +   +
Sbjct: 225 ISSALSACAARAALIEGKQ-VQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSV 283

Query: 362 PFKPQPAIFGTLLSACRVHKR 382
             K    ++  +LS    H R
Sbjct: 284 EEK-NVVLWNAILSGFSRHVR 303



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 13/128 (10%)

Query: 195 RPNASSLSSVLLGCSHLSSLQL-------------GKQVHQLVFKSPLCKDTTALTPLIS 241
           RP++  L  V +  +H+S LQ              G   H  + +  L  DT     L++
Sbjct: 4   RPSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMN 63

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG +E A KLF E+  + +V+WN M+  + Q+G  EKAL LF +M+ EG      T
Sbjct: 64  MYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFT 123

Query: 302 FVALLLAC 309
             +++ AC
Sbjct: 124 VSSVVCAC 131


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/568 (39%), Positives = 331/568 (58%), Gaps = 12/568 (2%)

Query: 15  GFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCILLNS--DDVVAAFD---FFQRLPIK 68
           G +   G L+ +  +F+  +  P++ +YN +L     ++     ++ F+        P  
Sbjct: 66  GVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNP 125

Query: 69  DTASWNTMI---SGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELF 124
           D  ++ +++   +G  Q     K          E N    ++++  Y + G    A +LF
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
               V+ VV+W  +ISGY   G VD A  +FD M  KNLV+W+ MI+GY  N    D ++
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245

Query: 185 LLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           L R M   G + PN  +L SVL  C+HL +L LGK +H+ + ++ +         L  MY
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMY 305

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG + +A  +F E+  +DV++W+ +I G A +G   +A   F +M ++G++P+ I+F+
Sbjct: 306 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFM 365

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
            LL AC HAGLVD G++YFD M   YGI  K +HY C+VDLL RAG+L +A  LI  MP 
Sbjct: 366 GLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPM 425

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +P   ++G LL  CR++K  +  E     +  L+ +N +G  V LAN+YA+M + DD A 
Sbjct: 426 QPNVIVWGALLGGCRIYKDAERGERVVWRILELD-SNHSGSLVYLANVYASMGRLDDAAS 484

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
            RL M++N  +K PG SWIE+   V+EF  GD  HP+ + I+  ++EL+ +MK+AGY P 
Sbjct: 485 CRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPK 544

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
            +  +H + EE KE  L  HSEKLA+AFGLI    GT IR+ KNLRVC DCH A K IS 
Sbjct: 545 TDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISK 604

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I +REI+VRD +RFHHFKDG CSC DYW
Sbjct: 605 IVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 54/223 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP------DVVSYNIMLSCILLNSDD 54
           M  K  V+W+++++G+A+   K  DA ELF ++         DV   +++ +C  L + D
Sbjct: 219 MMEKNLVSWSTMISGYARNE-KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALD 277

Query: 55  ---------------------------------VVAAFDFFQRLPIKDTASWNTMISGFV 81
                                            V+ A   F  +  +D  SW+ +I G  
Sbjct: 278 LGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLA 337

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                 +A + F  M E     N +S+  +++     G +DK +E F + P   V   T 
Sbjct: 338 MYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMP--QVYGITP 395

Query: 138 MISGY-------MKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
            I  Y        + G++D AE L + MP + N++ W A++ G
Sbjct: 396 KIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 438


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/614 (35%), Positives = 353/614 (57%), Gaps = 51/614 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDF 61
           +V++N+++ G++K  G  + A  LF ++     +P   ++  +L C  +  DD+V     
Sbjct: 215 SVSYNAMITGYSKD-GLDEKAVNLFVEMQNSGLKPTEFTFAAVL-CANIGLDDIVLGQQI 272

Query: 62  FQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                IK    WN  +S      + +  ++  AR LF  MPE++ VS++ +ISGY   G+
Sbjct: 273 -HSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 331

Query: 117 LDKAVELFK-----------------VAPVKSVVAW----------------------TA 137
              A +LF+                 ++   + + W                       +
Sbjct: 332 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 391

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K GK + AE +F  +  ++ V W AMI+ YV+  + E+GL+L   M    +  +
Sbjct: 392 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIAD 451

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++ +S+L   + ++SL LGKQ+H  + KS    +  + + L+ +Y KCG ++DA + F 
Sbjct: 452 QATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQ 511

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E+  +++V+WNAMIS YAQ+G+ E  L+ F +M   G++PDS++F+ +L AC+H+GLV+ 
Sbjct: 512 EMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEE 571

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G+ +F+SM   Y +  + +HY  +VD+L R+G+  EA  L+ +MP  P   ++ ++L+AC
Sbjct: 572 GLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNAC 631

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R+HK  +LA  AA  LFN+     A  YV ++NIYAA  +W++V+++  +M++  V K+P
Sbjct: 632 RIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLP 691

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
            YSW+E+    H F + DR HP++  I +K+  L K M+  GY PD   ALH   E+ K 
Sbjct: 692 AYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKV 751

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           + L +HSE+LAIAF LI  P G+PI V KNLR C DCH A K IS I  REI VRD+TRF
Sbjct: 752 ESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRF 811

Query: 558 HHFKDGTCSCGDYW 571
           HHF+DG CSCGD+W
Sbjct: 812 HHFRDGFCSCGDFW 825



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 49/362 (13%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           PD    N  +   L N + +  A   F+++P K+T S N MISG+V+  N+ +AR LF  
Sbjct: 50  PDTSRSNFRVGNFLKNGE-LSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 108

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELF-----------------------------KV 126
           M E+ +V+W+ +I GY +  Q  +A ELF                             ++
Sbjct: 109 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 168

Query: 127 APVKS----------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
             V++          ++    ++  Y K  ++DLA +LF EMP  + V++NAMI GY ++
Sbjct: 169 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKD 228

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              E  + L   M   G++P   + ++VL     L  + LG+Q+H  V K+    +    
Sbjct: 229 GLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVS 288

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+  Y K   + DA KLF E+  +D V++N +ISGYA  GK + A  LF +++     
Sbjct: 289 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 348

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLV 352
                F  +L   ++    ++G Q     ++   I    D        +VD+  + GK  
Sbjct: 349 RKQFPFATMLSIASNTLDWEMGRQ-----IHAQTIVTTADSEILVGNSLVDMYAKCGKFE 403

Query: 353 EA 354
           EA
Sbjct: 404 EA 405



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 17/263 (6%)

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           +  +++ G+L +A +LF+  P K+ V+   MISGY+K G +  A KLFD M  +  VTW 
Sbjct: 59  VGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWT 118

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ----- 222
            +I GY + +  ++  +L   M   G  P+  +  ++L GC   +  ++G Q+ Q     
Sbjct: 119 ILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC---NGHEMGNQITQVQTQI 175

Query: 223 --LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
             L + S L    T    L+  YCK   L+ AC+LF E+   D V++NAMI+GY++ G  
Sbjct: 176 IKLGYDSRLIVGNT----LVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLD 231

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYT 339
           EKA+ LF +M++ G+KP   TF A+L  C + GL D+ + Q   S V             
Sbjct: 232 EKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSN 289

Query: 340 CMVDLLGRAGKLVEAVDLIKKMP 362
            ++D   +   +++A  L  +MP
Sbjct: 290 ALLDFYSKHDSVIDARKLFDEMP 312



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 36/195 (18%)

Query: 203 SVLLGCSHLSS----LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S  L  S L S    L +   +   + K+    DT+     +  + K G+L  A +LF +
Sbjct: 18  STFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEK 77

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE------------------------- 293
           +  K+ V+ N MISGY + G   +A +LFD M +                          
Sbjct: 78  MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 137

Query: 294 ------GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
                 G +PD +TFV LL  CN   + +  I    + +   G  ++      +VD   +
Sbjct: 138 VQMQRCGTEPDYVTFVTLLSGCNGHEMGN-QITQVQTQIIKLGYDSRLIVGNTLVDSYCK 196

Query: 348 AGKLVEAVDLIKKMP 362
           + +L  A  L K+MP
Sbjct: 197 SNRLDLACQLFKEMP 211


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 338/574 (58%), Gaps = 15/574 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  + K +  ++ A+ +FD +   DVVS+  M SC  +N          F  +    
Sbjct: 171 NALIHAYGKCKC-VEGARRVFDDLVVKDVVSWTSMSSC-YVNCGLPRLGLAVFCEMGWNG 228

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLF-LAMPE---KNSVSWSAMISGYIECGQLDKAV 121
              ++ + ++++    + K++   R +   A+     +N    SA++S Y  C  + +A 
Sbjct: 229 VKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQAR 288

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENS 177
            +F + P + VV+W  +++ Y    + D    LF +M +K +     TWNA+I G +EN 
Sbjct: 289 LVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENG 348

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             E  +++LR M  LG +PN  ++SS L  CS L SL++GK+VH  VF+  L  D T +T
Sbjct: 349 QTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMT 408

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            L+ MY KCGDL  +  +F  I RKDVV WN MI   A HG G + L LF+ M   G+KP
Sbjct: 409 ALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKP 468

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           +S+TF  +L  C+H+ LV+ G+Q F+SM  D+ +    +HY CMVD+  RAG+L EA + 
Sbjct: 469 NSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEF 528

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I++MP +P  + +G LL ACRV+K ++LA+ +A  LF + P N  G YV L NI    K 
Sbjct: 529 IQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEP-NNPGNYVSLFNILVTAKL 587

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + +  R+ MKE  + K PG SW++VG  VH F  GD+ + E   I+  L EL ++MK 
Sbjct: 588 WSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKS 647

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
           AGY PD ++ L  + +E K + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A
Sbjct: 648 AGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNA 707

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KY+S +    IIVRD+ RFHHF++G CSC D W
Sbjct: 708 IKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 154/324 (47%), Gaps = 37/324 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  + AQ+LFD IPQPD  + + +           ++AF   + LP +    + ++ +  
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTL-----------ISAFTT-RGLPNEAIRLYASLRARG 127

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSA-----MISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++  N      +FL + +    S  A     +    I CG +  A               
Sbjct: 128 IKPHN-----SVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAF------------LG 170

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A+I  Y K   V+ A ++FD++  K++V+W +M + YV       GL +   M   G++
Sbjct: 171 NALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVK 230

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN+ +LSS+L  CS L  L+ G+ +H    +  + ++    + L+S+Y +C  ++ A  +
Sbjct: 231 PNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLV 290

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DVV+WN +++ Y  + + +K L LF +M  +G++ D  T+ A++  C   G  
Sbjct: 291 FDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQT 350

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYT 339
           +  ++    M N   +  KP+  T
Sbjct: 351 EKAVEMLRKMQN---LGFKPNQIT 371



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++   +  G    A++LFD +P  +  T + +I+ +       + ++L   +   GI+P+
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            S   +V   C         K+VH    +  +  D      LI  Y KC  +E A ++F 
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           ++  KDVV+W +M S Y   G     L +F +M   G+KP+S+T  ++L AC+
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACS 244


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/558 (40%), Positives = 331/558 (59%), Gaps = 8/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAF-DFFQRLPIKDTASWNTMI 77
           G +  A+++FD+    ++V YN ++S  +    + +V+A   +  +  P  D  +  + +
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S   +  +++  +     +       W    +A+I+ Y++CG+ + A  +F     K+ V
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV 408

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W ++I+G+++ G ++ A K+F  MP  +LV+WN MI   V+ S  ++ ++L R+M   G
Sbjct: 409 SWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG 468

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I  +  ++  V   C +L +L L K +H  + K  +  D    T L+ M+ +CGD + A 
Sbjct: 469 ITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAM 528

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F ++ ++DV  W A I   A  G G  A+ LFD+M  +G+KPD + FVALL A +H G
Sbjct: 529 QVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGG 588

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+ G   F SM + YGIA +  HY CMVDLLGRAG L EA+ LI  M  +P   I+G+L
Sbjct: 589 LVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSL 648

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L+ACRVHK +D+A +AA  +  L+P    G +V L+NIYA+  +WDDVA++RL +KE   
Sbjct: 649 LAACRVHKNVDIAAYAAERISELDPER-TGIHVLLSNIYASAGRWDDVAKVRLHLKEKGA 707

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            KMPG S IE+   + EF +GD  HPE+  I   LKE+  R++  GYVPDL   L  V E
Sbjct: 708 HKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNE 767

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           + KE LL  HSEKLAIAF LI    G PIRV KNLR+C DCH   K +S    REIIVRD
Sbjct: 768 KEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRD 827

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFH F+ G CSCGDYW
Sbjct: 828 NNRFHFFQQGFCSCGDYW 845



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 154/339 (45%), Gaps = 40/339 (11%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQL 117
           F ++  ++  SW ++I G+ ++    +A  LF  M E     NSV+   +IS   +   L
Sbjct: 197 FDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDL 256

Query: 118 DKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               +    + ++    + +   A++  YMK G +D A K+FDE   KNLV +N +++ Y
Sbjct: 257 QLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNY 316

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V    A + L +L  M+  G RP+  ++ S +  CS L  +  GK  H  V ++ L    
Sbjct: 317 VRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWD 376

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD- 292
                +I+MY KCG  E AC++F  +  K  V+WN++I+G+ ++G  E A ++F  M D 
Sbjct: 377 NVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDS 436

Query: 293 ------------------------------EGMKPDSITFVALLLACNHAGLVDLGIQYF 322
                                         EG+  D +T V +  AC + G +DL  ++ 
Sbjct: 437 DLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA-KWI 495

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              +    I       T +VD+  R G    A+ +  KM
Sbjct: 496 HGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM 534



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 104/183 (56%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++I  Y + G++D   ++FD+M  +N+V+W ++I GY +    ++ + L   M+ +GIR
Sbjct: 178 NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIR 237

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN+ ++  V+  C+ L  LQLG+QV   + +  L  +   +  L+ MY KCG ++ A K+
Sbjct: 238 PNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKI 297

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E   K++V +N ++S Y + G   + L +  +M   G +PD IT ++ + AC+    V
Sbjct: 298 FDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDV 357

Query: 316 DLG 318
             G
Sbjct: 358 SCG 360



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 86/155 (55%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           ++++I G+         + + R ++ +G  P+  +   VL  C+  ++L  G QVH  + 
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K    +D      LI  Y +CG+++   ++F ++  ++VV+W ++I GYA+ G  ++A+ 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           LF +M + G++P+S+T V ++ AC     + LG Q
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQ 261



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 41/221 (18%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDF 61
           KT V+WNS++AGF +  G ++ A ++F  +P  D+VS+N M+  ++  S   + +  F  
Sbjct: 405 KTRVSWNSLIAGFVRN-GDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRV 463

Query: 62  FQRLPIK-------------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102
            Q   I                    D A W   I G+++KK++    D+ L        
Sbjct: 464 MQSEGITADKVTMVGVASACGYLGALDLAKW---IHGYIKKKDI--HFDMHLG------- 511

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             +A++  +  CG    A+++F     + V AWTA I      G    A +LFDEM  + 
Sbjct: 512 --TALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQG 569

Query: 163 L----VTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNA 198
           +    V + A++         E G  + R M  + GI P A
Sbjct: 570 IKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQA 610



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 41/211 (19%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------ACKLFLEIQ--RKDVVTWNA 269
           KQ+H  + K+ L     +LT LIS   + G  E       A +LF+E          +++
Sbjct: 50  KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSS 109

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG 318
           +I G++  G G KA+ +F ++   G  PD+ TF  +L AC            H  +V +G
Sbjct: 110 LIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMG 169

Query: 319 IQ----YFDSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIK 359
            +      +S+++ YG   + D                +T ++    + G   EAV L  
Sbjct: 170 FERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFF 229

Query: 360 KM---PFKPQPAIFGTLLSACRVHKRLDLAE 387
           +M     +P       ++SAC   + L L E
Sbjct: 230 EMVEVGIRPNSVTMVGVISACAKLQDLQLGE 260


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 340/618 (55%), Gaps = 50/618 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + W++++  FA   G   +A   F  + Q  ++   +     LLN     +  +
Sbjct: 322 MKQTNLITWSAIITAFADH-GHCGEALRYFRMMQQEGILPNRVTF-ISLLNGFTTPSGLE 379

Query: 61  FFQRL-------PIKDTASW-NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              R+        + DT +  N +++ + + ++   AR +F  +   N +SW++MI  Y+
Sbjct: 380 ELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYV 439

Query: 113 ECGQLDKAVELFKVAPVKSV---------------------------------------V 133
           +C + D A++LF+    + +                                       +
Sbjct: 440 QCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPL 499

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             T++++ Y K G++D+AE +  EM  + +  WN +I GY  +  + + L+  + +    
Sbjct: 500 VQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEA 559

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I  +  +  SVL  C+  +SL  GK +H    +  L  D      L +MY KCG +E+A 
Sbjct: 560 IPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENAR 619

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  +  +  V+WN M+  YAQHG+ E+ L+L  KM+ EG+K + ITFV++L +C+HAG
Sbjct: 620 RIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAG 679

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L+  G QYF S+ +D GI  K +HY C+VDLLGRAGKL EA   I KMP +P    + +L
Sbjct: 680 LIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASL 739

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACRV K LD  + AA  L  L+P N++   V L+NIY+    W + A++R +M    V
Sbjct: 740 LGACRVQKDLDRGKLAAGKLLELDPGNSSASVV-LSNIYSERGDWKNAAKLRRAMASRRV 798

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+PG S I+V   VHEFR  D  HP    I++K++EL   M+ AGYVPD +  LH V E
Sbjct: 799 KKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDE 858

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE LL +HSEKLAIAFGLI  P  + + +FKNLRVC DCH ATK+IS I  REI+VRD
Sbjct: 859 EQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRD 918

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHF+DG+CSC DYW
Sbjct: 919 NHRFHHFRDGSCSCKDYW 936



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 197/442 (44%), Gaps = 80/442 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N+ L     + G L DA+++FD +P   V ++N M+S   + S+    AF  FQR+    
Sbjct: 198 NTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI-SERSGEAFFIFQRMQQEG 256

Query: 67  --------------------------IKDTASWNT----------MISGFVQKKNMAKAR 90
                                     ++++ S  +          +I+ + + ++   A 
Sbjct: 257 ERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAA 316

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMK-- 144
            +F  M + N ++WSA+I+ + + G   +A+  F++   + +    V + ++++G+    
Sbjct: 317 QVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPS 376

Query: 145 ------------------------------FGKV---DLAEKLFDEMPTKNLVTWNAMIA 171
                                         +G+    D A  +FD++   NL++WN+MI 
Sbjct: 377 GLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIG 436

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            YV+    +D L+L R M   GI+P+  +  ++L  C+  S  +  K VHQ V +S L  
Sbjct: 437 IYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGG 496

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                T L++MY K G+L+ A  +  E+  + +  WN +I+GYA HG+  +AL  + K++
Sbjct: 497 SPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQ 556

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            E +  D +TF+++L AC  +  +  G     + V + G+ +       + ++  + G +
Sbjct: 557 LEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV-ECGLDSDVIVKNALTNMYSKCGSM 615

Query: 352 VEAVDLIKKMPFKPQPAIFGTL 373
             A  +   MP +   +  G L
Sbjct: 616 ENARRIFDSMPIRSAVSWNGML 637



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 224/525 (42%), Gaps = 87/525 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-------- 52
           +  +  V+WN +++ ++  +   ++A  LF  +    V    I L  +L NS        
Sbjct: 18  IRARNVVSWNVMISAYSSYK-SFQEALALFHAMLLEGVAPNAITLVAVL-NSCGSFRELR 75

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           D ++      +R   ++T     +++ + +   +  A+ +F  M EKN V+W+AM+  Y 
Sbjct: 76  DGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYS 135

Query: 113 ECGQLDK-AVELFKVAPVKSVVAW------------------------------------ 135
             G   K AVELF    ++ V A                                     
Sbjct: 136 LQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDV 195

Query: 136 ---TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA+++ Y K G +  A K+FD MP +++ TWN+MI+ Y  +  + +   + + M   
Sbjct: 196 FVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQE 255

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G R +  +  S+L  C +  +LQ GK V + + ++    D    T LI+MY +C   EDA
Sbjct: 256 GERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDA 315

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL------ 306
            ++F  +++ +++TW+A+I+ +A HG   +ALR F  M+ EG+ P+ +TF++LL      
Sbjct: 316 AQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTP 375

Query: 307 -----LACNHAGLVDLGIQYFDSM----VNDYGIAAKPD---------------HYTCMV 342
                L+  H  + + G+    +M    VN YG    PD                +  M+
Sbjct: 376 SGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMI 435

Query: 343 DLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
            +  +  +  +A+ L + M     +P    F T+L AC +       +     +      
Sbjct: 436 GIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLG 495

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV----VKMPGYS 440
            +      L N+YA   + D    I   M E  +    V + GY+
Sbjct: 496 GSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYA 540



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 14/266 (5%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMIS 109
           D VAAF    ++  ++  SWN MIS +   K+  +A  LF AM       N+++  A+++
Sbjct: 10  DAVAAFG---KIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLN 66

Query: 110 G-----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                  +  G L  A+ L +     ++VA TA+++ Y K G +  A+ +F+EM  KN+V
Sbjct: 67  SCGSFRELRDGILVHALSLERGFFQNTLVA-TALLNMYGKCGTLLDAQSVFEEMAEKNVV 125

Query: 165 TWNAMIAGY-VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           TWNAM+  Y ++    +  ++L   M+  G++ N  +  +VL       +L+ GK +H  
Sbjct: 126 TWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSC 185

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V +S    D    T L++ Y KCG L DA K+F  +  + V TWN+MIS Y+   +  +A
Sbjct: 186 VRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEA 245

Query: 284 LRLFDKMKDEGMKPDSITFVALLLAC 309
             +F +M+ EG + D +TF+++L AC
Sbjct: 246 FFIFQRMQQEGERCDRVTFLSILDAC 271



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y + G +  A   F ++  +N+V+WN MI+ Y      ++ L L   M+  G+ PNA +L
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            +VL  C     L+ G  VH L  +    ++T   T L++MY KCG L DA  +F E+  
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 262 KDVVTWNAMISGYAQHGKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           K+VVTWNAM+  Y+  G   K A+ LF +M  EG+K + ITF+ +L +      +  G +
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG-K 180

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +  S V +   +      T +V+   + G L +A  +   MP +     + +++SA  + 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRS-VGTWNSMISAYSIS 239

Query: 381 KRLDLAEF 388
           +R   A F
Sbjct: 240 ERSGEAFF 247



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY +CG L DA   F +I+ ++VV+WN MIS Y+ +   ++AL LF  M  EG+ P++IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            VA+L +C     +  GI    ++  + G        T ++++ G+ G L++A  + ++M
Sbjct: 61  LVAVLNSCGSFRELRDGI-LVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 362 PFK 364
             K
Sbjct: 120 AEK 122


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/530 (41%), Positives = 314/530 (59%), Gaps = 32/530 (6%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIECGQLDKAVEL---- 123
           WN MI+G+ Q ++  KA  LF+ M        N+ + S+++  Y+ C  + +   +    
Sbjct: 286 WNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYV 345

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
            K     +     A+I  Y + G +  ++++FD M  +++V+WN +I  YV    + D L
Sbjct: 346 IKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDAL 405

Query: 184 KLLRMMIGLG----------------IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
            LL  M  +                  +PN+ +L +VL GC+ LS+L  GK++H    ++
Sbjct: 406 LLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN 465

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L    T  + L+ MY KCG L  A ++F ++  ++V+TWN +I  Y  HGKG+++L LF
Sbjct: 466 LLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELF 525

Query: 288 DKMKDEG-----MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           + M  EG     +KP  +TF+AL  +C+H+G+VD G+  F  M N++GI   PDHY C+V
Sbjct: 526 EDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIV 585

Query: 343 DLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           DL+GRAGK+ EA  L+  MP    +   + +LL ACR++  +++ E AA NL  L P + 
Sbjct: 586 DLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQP-DV 644

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 461
           A  YV L+NIY++   WD    +R  MK   V K PG SWIE G  VH+F +GD  HP+ 
Sbjct: 645 ASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQS 704

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             +H+ L+ L +R+K  GYVPD    LH + EE KE +L  HSEKLAIAFG++  P GT 
Sbjct: 705 EKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTT 764

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IRV KNLRVC DCH A+K+IS IE REII+RD  RFHHFKDGTCSCGDYW
Sbjct: 765 IRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 12/263 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-LAMPEKNSVSWSAMISGYIECGQ 116
           A+  F R+  +D  SWN++IS   + +    A   F L + E    S   ++S  + C  
Sbjct: 66  AYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN 125

Query: 117 LDKAVELFKVAPVKS---------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           L K   L+    +             +  A+++ Y K G++D A+ L      ++LVTWN
Sbjct: 126 LRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN 185

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +MI+ + +N    + L  LR+M+  G++P+  + +SVL  CSHL  L+ GK++H    ++
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRT 245

Query: 228 -PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             + +++   + L+ MYC CG +E    +F  +  + +  WNAMI+GYAQ    EKAL L
Sbjct: 246 DDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALML 305

Query: 287 FDKMK-DEGMKPDSITFVALLLA 308
           F +M+   G+  ++ T  +++ A
Sbjct: 306 FIEMEAAAGLYSNATTMSSIVPA 328



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           Q+   V  F      SV     +++ Y K G +  A K+FD +  ++ V+WN++I+    
Sbjct: 31  QIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCR 90

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKD 232
               E  +K  R+M+  G  P++ +L S+ L CS+L     L LGKQ+H   F+    + 
Sbjct: 91  FEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWR- 149

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
           T +   L++MY K G L+DA  L +  + +D+VTWN+MIS ++Q+ +  +AL     M  
Sbjct: 150 TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVL 209

Query: 293 EGMKPDSITFVALLLACNHAGLVDLG 318
           EG+KPD +TF ++L AC+H  L+  G
Sbjct: 210 EGVKPDGVTFASVLPACSHLDLLRTG 235



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 164/384 (42%), Gaps = 58/384 (15%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T + N+++A +AK  G+L DA+ L       D+V++N M+S    N +  + A  F + +
Sbjct: 150 TFSNNALMAMYAKL-GRLDDAKSLLVLFEDRDLVTWNSMISSFSQN-ERFMEALMFLRLM 207

Query: 66  PIK----DTASWNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIECGQ 116
            ++    D  ++ +++        +   +++           +NS   SA++  Y  CGQ
Sbjct: 208 VLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQ 267

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           ++    +F     + +  W AMI+GY +    + A  LF EM                  
Sbjct: 268 VESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEA---------------- 311

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
                           G+  NA+++SS++        +   + +H  V K  L  +    
Sbjct: 312 --------------AAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQ 357

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK----- 291
             LI MY + GD++ + ++F  ++ +D+V+WN +I+ Y   G+   AL L  +M+     
Sbjct: 358 NALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEK 417

Query: 292 --------DEG---MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
                   DE     KP+SIT + +L  C     +  G +     + +  +A++    + 
Sbjct: 418 STYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSA 476

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFK 364
           +VD+  + G L  A  +  +MP +
Sbjct: 477 LVDMYAKCGCLNLARRVFDQMPIR 500



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 10/129 (7%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK------SPLCKDTTALTPLISM 242
           MIG G  P+  +  +VL   + +  L LGKQ+H  VFK      S +  D T    L++M
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNT----LVNM 56

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG L DA K+F  I  +D V+WN++IS   +  + E A++ F  M  EG +P S T 
Sbjct: 57  YGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTL 116

Query: 303 VALLLACNH 311
           V++ LAC++
Sbjct: 117 VSMALACSN 125



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 160/385 (41%), Gaps = 72/385 (18%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFD 60
           ++T     + L     + G +K ++ +FD +   D+VS+N +++  ++   S D +    
Sbjct: 350 LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLH 409

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDK 119
             QR+  K T   +     +  +K           +P K NS++   ++ G      L K
Sbjct: 410 EMQRIEEKSTYDGD-----YNDEKQ----------VPFKPNSITLMTVLPGCASLSALAK 454

Query: 120 AVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
             E+   A        V   +A++  Y K G ++LA ++FD+MP +N++TWN +I  Y  
Sbjct: 455 GKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGM 514

Query: 176 NSWAEDGLKLLRMMIGLG-----IRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPL 229
           +   ++ L+L   M+  G     ++P   +  ++   CSH   +  G  + H++  +  +
Sbjct: 515 HGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGI 574

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                    ++ +  + G +E+A  L            N M SG             FDK
Sbjct: 575 EPAPDHYACIVDLVGRAGKVEEAYGLV-----------NTMPSG-------------FDK 610

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD---HYTCMVDLLG 346
           +           + +LL AC     +++G      +  +  +  +PD   HY  + ++  
Sbjct: 611 VG---------AWSSLLGACRIYHNIEIG-----EIAAENLLQLQPDVASHYVLLSNIYS 656

Query: 347 RAGKLVEAVDL---IKKMPFKPQPA 368
            AG   +A++L   +K M  K +P 
Sbjct: 657 SAGLWDKAMNLRRRMKAMGVKKEPG 681


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/517 (41%), Positives = 314/517 (60%), Gaps = 14/517 (2%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNS--VSWSAMISGYIEC 114
           FD F R+ + D          +V+ + +  A  +F   PE  KN   + W+ +I GY   
Sbjct: 173 FDSFVRVSLVDM---------YVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRM 223

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G L KA ELF   P K   +W ++I+G+MK G +  A++LF +MP KN+V+W  M+ G+ 
Sbjct: 224 GDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFS 283

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +N   E  L+    M+  G RPN  ++ S L  C+ + +L  G ++H  +  +    +  
Sbjct: 284 QNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLV 343

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
             T L+ MY KCG++E A K+F E + K ++ W+ MI G+A HG   KAL+ F+ MK  G
Sbjct: 344 IGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTG 403

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            KPDS+ F+A+L AC+H+G V+ G+++FD+M   Y I     HYT +VD+LGRAG+L EA
Sbjct: 404 TKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEA 463

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
           +  I+ MP  P   ++G L  ACR HK +++AE A+  L  L P +  G YV L+N YA+
Sbjct: 464 LKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKH-PGSYVFLSNAYAS 522

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
           + +WDD  R+R+SM+++   K PG+S+IEV   +H F +GD  H   V I+ KL E+   
Sbjct: 523 VGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISAS 582

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
            +  GY  ++E  LH + EE KE+ L +HSEKLA+AFG++    GT +R+ KNLRVC DC
Sbjct: 583 AREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDC 642

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H   KY S + KREII+RD  RFHHF DG CSCGDYW
Sbjct: 643 HSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 155/329 (47%), Gaps = 47/329 (14%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMI 77
           +L  A ++FD+ P+  V + ++++  +L++      D+V A + F  +P KDT SWN++I
Sbjct: 190 ELGSALKVFDESPE-SVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLI 248

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------------- 124
           +GF++  +M +A++LF+ MPEKN VSW+ M++G+ + G  +KA+E F             
Sbjct: 249 NGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDY 308

Query: 125 ----------KVAPVKS----------------VVAWTAMISGYMKFGKVDLAEKLFDEM 158
                     K+  + +                +V  TA++  Y K G ++ AEK+F E 
Sbjct: 309 TIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHET 368

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             K L+ W+ MI G+  +      L+    M   G +P++    +VL  CSH   +  G 
Sbjct: 369 KEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGL 428

Query: 219 QVHQLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQ 276
           +    + +  L + +    T ++ M  + G L++A K    +    D V W A+      
Sbjct: 429 KFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRT 488

Query: 277 HGKGEKALRLFDK-MKDEGMKPDSITFVA 304
           H   E A     K ++ E   P S  F++
Sbjct: 489 HKNVEMAELASKKLLQLEPKHPGSYVFLS 517



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 116/299 (38%), Gaps = 67/299 (22%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           +L++     S    T  IS       VD A  +F     KN   +NA+I G  ENS  E 
Sbjct: 64  QLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFES 123

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            +    +M+   I P+  +   VL   + LS+  +G+ +H  + K  L  D+     L+ 
Sbjct: 124 SISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVD 183

Query: 242 M-----------------------------------YCKCGDLEDACKLFLEIQRKD--- 263
           M                                   YC+ GDL  A +LF  + +KD   
Sbjct: 184 MYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGS 243

Query: 264 ----------------------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
                                       VV+W  M++G++Q+G  EKAL  F  M +EG 
Sbjct: 244 WNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGA 303

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +P+  T V+ L AC   G +D G++  + +  + G        T +VD+  + G +  A
Sbjct: 304 RPNDYTIVSALSACAKIGALDAGLRIHNYLSGN-GFKLNLVIGTALVDMYAKCGNIEHA 361



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 35/251 (13%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +Q+H  +++  +   +  +T  IS       ++ A  +F   + K+   +NA+I G A++
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMV 326
            + E ++  F  M    + PD +TF  +L +             H G++  G++ FDS V
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLE-FDSFV 177

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
                         +VD+  +  +L  A+ +  + P   +      L+    +H    + 
Sbjct: 178 R-----------VSLVDMYVKVEELGSALKVFDESPESVKNG--SVLIWNVLIHGYCRMG 224

Query: 387 EFA-AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
           +   A  LF+  P    G +  L N +  M        + + M E NVV     SW    
Sbjct: 225 DLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVV-----SWT--- 276

Query: 446 TVVHEF-RSGD 455
           T+V+ F ++GD
Sbjct: 277 TMVNGFSQNGD 287


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/565 (40%), Positives = 314/565 (55%), Gaps = 31/565 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCI---------------LLNSDDVVA----AFDFFQRLP 66
           + ++ D+  +P + + N M+                  +L S+DV++     F+F  R  
Sbjct: 62  SNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTC 121

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +        + G + K              E +    S +I  Y E   L     +F+ 
Sbjct: 122 AQSACEAGPAVHGALIKHGF-----------EYDPHVESGLIFMYAEMSCLSSCHRVFES 170

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                +V  T M+S   K G +  A  LFD MP ++ V+WNAMIAGY +   + + L L 
Sbjct: 171 VQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLF 230

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           ++M   G++ N  S+ SV+  C+HL +L  GK  H  + K+ +       T L+ MY KC
Sbjct: 231 KLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKC 290

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G+++ A K+F E+  K+V TW+  I G A +G G+K L LF  MK EG+ P+ ITF+++L
Sbjct: 291 GNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVL 350

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             C+  G VD G  +FDSM  D+GI  + +HY CMVDL GRAG+L EA++ I  MP KP 
Sbjct: 351 KGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPH 410

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              +G LL+ACR++K ++L EFA+  L  +   N  G YV L+NIYA    WD V+ +R 
Sbjct: 411 AGAWGALLNACRMYKNMELGEFASRKLIEVEGKN-HGAYVSLSNIYADTGNWDRVSNVRQ 469

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           SMK   + K+PG S +EV   VHEF SGD+ HP    I     E+ KR+KLAGYV     
Sbjct: 470 SMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNS 529

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            L  + EE KE  L  HSEK+AIAFGL  +  G PIR+ KNLR+C DCH  +K IS I +
Sbjct: 530 VLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFE 589

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REIIVRD  RFHHFKDG CSC D+W
Sbjct: 590 REIIVRDRNRFHHFKDGECSCKDFW 614



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 134/306 (43%), Gaps = 46/306 (15%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L     +F+ + +PD+V    M+S       D+  A + F  +P +D  SWN MI+G+ Q
Sbjct: 161 LSSCHRVFESVQKPDLVCQTTMVSACA-KCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQ 219

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKA------VELFKVAPVKSV 132
           +    +A +LF  M     + N VS  ++++     G LD+       +E  K+    +V
Sbjct: 220 RGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQ--MTV 277

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA++  Y K G VD A K+F EM  KN+ TW+  I G   N + +  L+L   M   
Sbjct: 278 NLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHE 337

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI PN  +  SVL GCS +  +  G+      F S   K    + P +  Y         
Sbjct: 338 GIAPNEITFISVLKGCSVVGFVDEGRS----HFDS--MKRDHGIEPRLEHY--------- 382

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
                            M+  Y + G+ E+AL   + M    +KP +  + ALL AC   
Sbjct: 383 ---------------GCMVDLYGRAGRLEEALNFINTMP---LKPHAGAWGALLNACRMY 424

Query: 313 GLVDLG 318
             ++LG
Sbjct: 425 KNMELG 430



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 27/267 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN------IMLSCILLNS-D 53
           M  +  V+WN+++AG+A QRG+ ++A  LF K+ Q D V  N      ++ +C  L + D
Sbjct: 202 MPQRDFVSWNAMIAGYA-QRGQSREALNLF-KLMQMDGVKVNEVSMISVVTACTHLGALD 259

Query: 54  DVVAAFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
               A  + ++  I+ T +  T ++  + +  N+ +A  +F  M EKN  +WS  I G  
Sbjct: 260 QGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLA 319

Query: 113 ECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN---- 162
             G   K +ELF       +AP  + + + +++ G    G VD     FD M   +    
Sbjct: 320 MNGYGQKCLELFSFMKHEGIAP--NEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEP 377

Query: 163 -LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            L  +  M+  Y      E+ L  +  M    ++P+A +  ++L  C    +++LG+   
Sbjct: 378 RLEHYGCMVDLYGRAGRLEEALNFINTM---PLKPHAGAWGALLNACRMYKNMELGEFAS 434

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGD 248
           + + +    K+  A   L ++Y   G+
Sbjct: 435 RKLIEVE-GKNHGAYVSLSNIYADTGN 460


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/605 (37%), Positives = 345/605 (57%), Gaps = 50/605 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----- 65
           SV +  A     L  A+++FD IP+ D  S+  M++  + N       FD  + L     
Sbjct: 192 SVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKN-----GCFDLGKELLKGMD 246

Query: 66  PIKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISG----------- 110
                 ++N MISG+V     ++ +   R +  +  E +  ++ ++I             
Sbjct: 247 ENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGK 306

Query: 111 -----------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGK 147
                                  Y +CG+ ++A  +F+  P K +V+W A++SGY+  G 
Sbjct: 307 QVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGH 366

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +  A+ +F EM  KN+++W  MI+G  EN + E+GLKL   M   G  P   + S  +  
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L +   G+Q H  + K       +A   LI+MY KCG +E+A ++F  +   D V+W
Sbjct: 427 CAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSW 486

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NA+I+   QHG G +A+ ++++M  +G++PD ITF+ +L AC+HAGLVD G +YF+SM  
Sbjct: 487 NALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMET 546

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
            Y I    DHY  ++DLL R+GK  EA  +I+ +PFKP   I+  LLS CRVH  ++L  
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGI 606

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
            AA  LF L P +  G Y+ L+N+YAA  +W++VAR+R  M++  V K    SWIE+ T 
Sbjct: 607 IAADKLFGLIPEH-DGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQ 665

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQLLLFHSEK 506
           VH F   D  HPE  ++++ L++L K M+  GYVPD  F LH V  +  KE +L  HSEK
Sbjct: 666 VHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEK 725

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           +A+AFGL+K+P GT IR+FKNLR CGDCH   +++S + +R+II+RD  RFHHF++G CS
Sbjct: 726 IAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECS 785

Query: 567 CGDYW 571
           CG++W
Sbjct: 786 CGNFW 790



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 204/469 (43%), Gaps = 117/469 (24%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISG 79
           +L  A++LFD+I +PD ++   M+S     S D+  A   F+  P+  +DT  +N MI+G
Sbjct: 64  ELDYARQLFDEISEPDKIARTTMVSGYCA-SGDIALARSVFEETPVSMRDTVMYNAMITG 122

Query: 80  FVQKKNMAKARDLFLAMP------------------------EKNSVSW----------- 104
           F    +   A +LF  M                         EK  V +           
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGY 182

Query: 105 -----SAMISGYIECGQ----LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
                +A++S Y  C      L  A ++F   P K   +WT M++GY+K G  DL ++L 
Sbjct: 183 VTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELL 242

Query: 156 DEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
             M     LV +NAMI+GYV     ++ L+++R M+  GI  +  +  SV+  C++   L
Sbjct: 243 KGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLL 302

Query: 215 QLGKQVH------------------------------QLVFKSPLCKDTTALTPLISMYC 244
           QLGKQVH                              + +F+    KD  +   L+S Y 
Sbjct: 303 QLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYV 362

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
             G + +A  +F E++ K++++W  MISG A++G GE+ L+LF  MK EG +P    F  
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422

Query: 305 LLLACN-----------HAGLVDLGIQYFDS----------MVNDYGIAAKPDH------ 337
            + +C            HA LV +G   FDS          M    G+  +         
Sbjct: 423 AIKSCAVLGAYCNGQQFHAQLVKIG---FDSSLSAGNALITMYAKCGVVEEAQQVFRTMP 479

Query: 338 ------YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
                 +  ++  LG+ G  VEAVD+ ++M     +P    F T+L+AC
Sbjct: 480 CLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTAC 528



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 132/297 (44%), Gaps = 41/297 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLV 164
           +I  Y +  +LD A +LF        +A T M+SGY   G + LA  +F+E P   ++ V
Sbjct: 55  LIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTV 114

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQL 223
            +NAMI G+  N+     + L   M   G +P+  + +SVL G +  +   +   Q H  
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAA 174

Query: 224 VFKSPLCKDTTALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTW------------ 267
             KS     T+    L+S+Y +C      L  A K+F +I  KD  +W            
Sbjct: 175 ALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGC 234

Query: 268 --------------------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
                               NAMISGY   G  ++AL +  +M   G++ D  T+ +++ 
Sbjct: 235 FDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIR 294

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           AC +A L+ LG Q    ++     +   D+   +V L  + GK  EA  + +KMP K
Sbjct: 295 ACANARLLQLGKQVHAYVLRREDFSFHFDN--SLVTLYYKCGKFNEARAIFEKMPAK 349



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           +I  G +P+A  L+ ++      S L   +Q+   + +     D  A T ++S YC  GD
Sbjct: 40  IITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEP----DKIARTTMVSGYCASGD 95

Query: 249 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           +  A  +F E  +  +D V +NAMI+G++ +  G  A+ LF KMK EG KPD  T+ ++L
Sbjct: 96  IALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL 155


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/489 (42%), Positives = 315/489 (64%), Gaps = 6/489 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+WN+++ G+A Q G++  A  LF+K+P+ +VVS+N ++S +L     +  A  
Sbjct: 141 MPNKNVVSWNTMIDGYA-QNGRIDSAMYLFEKMPERNVVSWNTVMS-MLAQCGRIEEARR 198

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P +D  SW  MI+G  +   + +AR LF  MPE+N VSW+AMI+GY +  +LD+A
Sbjct: 199 LFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEA 258

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++LF+  P + + +W  MI+G ++ G +  A KLF+EMP KN+++W  MI G V+   +E
Sbjct: 259 LDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESE 318

Query: 181 DGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + LK+  RM+   G +PN  +  SVL  CS+L+ L  G+QVHQ++ K+     T  ++ L
Sbjct: 319 EALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSAL 378

Query: 240 ISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           I+MY KCG+L  A K+F +    ++D+V+WN +I+ YA HG G++A+  F +M+  G KP
Sbjct: 379 INMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKP 438

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D +T+V LL AC+HAGLV+ G++YFD +V D  I  + DHY C+VDL GRAG+L EA   
Sbjct: 439 DDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGF 498

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I+++  KP   ++G LL+ C VH  + + + AA  L  + P N AG Y+ L+NIYA+  K
Sbjct: 499 IERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPEN-AGTYLLLSNIYASTGK 557

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + AR+RL MK+  + K PG SWIEVG  VH F  GD+ H +   I+  L++L  +MK 
Sbjct: 558 WREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKK 617

Query: 478 AGYVPDLEF 486
           AGY P+ +F
Sbjct: 618 AGYEPNNDF 626



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 172/314 (54%), Gaps = 22/314 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVA 127
           + A  N MI+   +   + +AR LF  M E + ++W+ +ISGYI+CG +++A  LF +V 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 110

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             K+VV WTAM+ GY++  K+  AEKLF+EMP KN+V+WN MI GY +N   +  + L  
Sbjct: 111 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFE 170

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    +  + +++ S+L  C  +      ++  +L  + P  +D  + T +I+   K G
Sbjct: 171 KMPERNV-VSWNTVMSMLAQCGRI------EEARRLFDRMPE-RDVISWTAMIAGLSKNG 222

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +++A  LF  +  ++VV+WNAMI+GYAQ+ + ++AL LF++M +  + P   T +  L+
Sbjct: 223 RIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDL-PSWNTMITGLI 281

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PF 363
                G +    + F+ M     I+     +T M+    + G+  EA+ +  +M      
Sbjct: 282 ---QNGDLRRARKLFNEMPKKNVIS-----WTTMITGCVQEGESEEALKIFSRMLSTNGA 333

Query: 364 KPQPAIFGTLLSAC 377
           KP    F ++L AC
Sbjct: 334 KPNQGTFVSVLGAC 347


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/621 (38%), Positives = 335/621 (53%), Gaps = 62/621 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIML-------------- 45
           K+  +WN+++AG+ + +   +DA  LF ++     QP+  +Y I+L              
Sbjct: 92  KSGASWNAMIAGYVEHK-HAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 46  --SCIL---LNSD---------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
             +CI    L SD                +  A   F  L   D  SW  MI  + Q  N
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 86  MAKARDLFLAMPEK----NSVSWSAMISGYIECGQL-----------DKAVELFKVAPVK 130
             +A  L L M ++    N++++ ++++     G L           D  +EL       
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLEL------- 263

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V   TA++  Y K G +D A  +FD M  +++V+WN MI  + E+    +   L   M 
Sbjct: 264 DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQ 323

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G +P+A    S+L  C+   +L+  K++H+    S L  D    T L+ MY K G ++
Sbjct: 324 TEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSID 383

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           DA  +F  ++ ++VV+WNAMISG AQHG G+ AL +F +M   G+KPD +TFVA+L AC+
Sbjct: 384 DARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACS 443

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           HAGLVD G   + +M   YGI     H  CMVDLLGRAG+L+EA   I  M   P  A +
Sbjct: 444 HAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATW 503

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G LL +CR +  ++L E  A     L+P NAA  YV L+NIYA   KWD V+ +R  M+E
Sbjct: 504 GALLGSCRTYGNVELGELVAKERLKLDPKNAA-TYVLLSNIYAEAGKWDMVSWVRTMMRE 562

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K PG SWIEV   +H+F   D  HPE   I+E   ++ +++K  GY+PD    L  
Sbjct: 563 RGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKN 622

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
              + KE  +  HSEKLAI +GL+  P G PIRVFKNLRVC DCH ATK IS +E REII
Sbjct: 623 KNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREII 682

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD  RFHHFKDG CSCGDYW
Sbjct: 683 VRDANRFHHFKDGVCSCGDYW 703



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 190/420 (45%), Gaps = 68/420 (16%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD----LFLAMPEKNSVSWSAM 107
           S+ +V   +  QR  I D+  +  ++   +++K++  A+     +  +  E+N+   + +
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           +  YIECG+L +A                                 +FD +  K+  +WN
Sbjct: 70  LHVYIECGRLQEA-------------------------------RCVFDALVKKSGASWN 98

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AMIAGYVE+  AED ++L R M   G++PNA +   +L  C+ LS+L+ GK+VH  +   
Sbjct: 99  AMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHG 158

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  D    T L+ MY KCG + +A ++F  +   D+++W  MI  YAQ G G++A RL 
Sbjct: 159 GLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLM 218

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGL---------------VDLGIQYFDSMVNDYGIA 332
            +M+ EG KP++IT+V++L AC   G                ++L ++   ++V  Y  +
Sbjct: 219 LQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKS 278

Query: 333 AKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLL 374
              D                +  M+      G+  EA DL  +M     KP   +F ++L
Sbjct: 279 GSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSIL 338

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           +AC     L+  +    +  +            L ++Y+     DD   +   MK  NVV
Sbjct: 339 NACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVV 398



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M V+  V+WN ++  FA + G+  +A +LF ++     +PD + +   LS  +LN+    
Sbjct: 291 MKVRDVVSWNVMIGAFA-EHGRGHEAYDLFLQMQTEGCKPDAIMF---LS--ILNACASA 344

Query: 57  AAFDFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            A ++ +++           D      ++  + +  ++  AR +F  M  +N VSW+AMI
Sbjct: 345 GALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMI 404

Query: 109 SGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVD 149
           SG  + G    A+E+F+      V    V + A++S     G VD
Sbjct: 405 SGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 348/601 (57%), Gaps = 42/601 (6%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           +V  +V+WNS+LAG+  + G +++A+ ++ ++P+  +++ N M+    +    VV A   
Sbjct: 275 SVLDSVSWNSILAGYI-EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGL-VVEACKL 332

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS----------- 103
           F  +  KD  +W+ +I+ F Q +   +A   F+ M        E  +VS           
Sbjct: 333 FDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVV 392

Query: 104 ---------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 +A+I  Y +CG +  A +LF  A +  +++W +MISGY
Sbjct: 393 NMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGY 452

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           +K   VD A+ +FD MP K++V+W++MI+GY +N   ++ L L + M   G +P+ ++L 
Sbjct: 453 LKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLV 512

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           SV+  C+ L++L+ GK VH  + ++ L  +    T LI MY KCG +E A ++F  +  K
Sbjct: 513 SVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK 572

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
            + TWNA+I G A +G  E +L +F  MK   + P+ ITF+ +L AC H GLVD G  +F
Sbjct: 573 GISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 632

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            SM++D+ I     HY CMVDLLGRAGKL EA +L+ +MP  P  A +G LL AC+ H  
Sbjct: 633 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 692

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
            ++       L  L P +  G +V L+NIYA+  KWDDV  IR  M ++ V+K+PG S I
Sbjct: 693 SEMGRRVGRKLIELQP-DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMI 751

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           E   V+HEF +GD+ HP++ +I + L E+  ++KL GY PD+   L  V EE KE  L  
Sbjct: 752 EANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFR 811

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSEKLAIAFGLI +   TPIR+ KNLR+C DCH A K IS    R+I+VRD  RFHHF+ 
Sbjct: 812 HSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQ 871

Query: 563 G 563
           G
Sbjct: 872 G 872



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 160/319 (50%), Gaps = 32/319 (10%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I+ F    NM  A  +F      +SVSW+++++GYIE G +++A  ++   P +S++
Sbjct: 252 NTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSII 311

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A  +MI  +   G V  A KLFDEM  K++VTW+A+IA + +N   E+ ++    M  +G
Sbjct: 312 ASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIG 371

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  +     S L  C++L  + +GK +H L  K            LI MY KCGD+  A 
Sbjct: 372 VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVAR 431

Query: 254 KLFLE-------------------------------IQRKDVVTWNAMISGYAQHGKGEK 282
           KLF E                               +  KDVV+W++MISGYAQ+   ++
Sbjct: 432 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 491

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
            L LF +M+  G KPD  T V+++ AC     ++ G ++  + +   G+       T ++
Sbjct: 492 TLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLI 550

Query: 343 DLLGRAGKLVEAVDLIKKM 361
           D+  + G +  A+++   M
Sbjct: 551 DMYMKCGCVETALEVFYGM 569



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            Y++ +       L + M+   +  +  +   ++  CS   S    KQVH  V K     
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      LI+ +  C ++ DAC++F E    D V+WN++++GY + G  E+A  ++ +M 
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +  +    I   ++++     GLV    + FD M+
Sbjct: 307 ERSI----IASNSMIVLFGMRGLVVEACKLFDEML 337


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 348/619 (56%), Gaps = 50/619 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M ++    WN++++GF    GK+ +A E+FD++    V   ++ +S +L   +  DD+++
Sbjct: 200 MMIRDIGTWNAMISGFYLN-GKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIIS 258

Query: 58  A-------------FDFF----------------------QRLPIKDTASWNTMISGFVQ 82
                         FD F                       ++ ++D  SWN++++ F Q
Sbjct: 259 GVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQ 318

Query: 83  KKNMAKARDLFLAMPEKNSV----SWSAMISGYIECGQL--DKAVELF---KVAPVKSVV 133
            K    A  ++  M     V    +  ++ S   E G     +++  F   +   +  + 
Sbjct: 319 NKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIA 378

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGL 192
              A+I  Y K G +D A K+F+ +P K++++WN++I GY +N  A + + +   M    
Sbjct: 379 LGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYS 438

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G  PN  +  S+L   S L +L+ G + H  + K+ L  D    T L+ MY KCG L DA
Sbjct: 439 GAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADA 498

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF E+  +  V+WNA+IS +  HG G KA++LF +M+ EG+KPD ITFV+LL AC+H+
Sbjct: 499 LSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHS 558

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD G   F  M   YGI     HY CMVDL GRAG L +A + +K MP +P  +++G 
Sbjct: 559 GLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGA 618

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL ACR+H+ ++L    + +L  +   N  G YV L+NIYA +  W+ V  +R   ++  
Sbjct: 619 LLGACRIHENVELVRTVSDHLLKVESENV-GYYVLLSNIYAKLGHWEGVDEVRSLARDRG 677

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PG+S IEV   +  F +G++ HP+   I+ +L+ L  +MK  GYVPD  F L  V 
Sbjct: 678 LKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVE 737

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           ++ KE +L  HSE+LA+AFG+I  P  T +++FKNLRVCGDCH ATK+IS I +REIIVR
Sbjct: 738 DDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVR 797

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D+ RFHHFKDG CSCGDYW
Sbjct: 798 DSNRFHHFKDGVCSCGDYW 816



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 169/330 (51%), Gaps = 31/330 (9%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE- 113
           V  A + F  + I+D  +WN MISGF     +A+A ++F  M  K+    S  IS  +  
Sbjct: 190 VSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPI 249

Query: 114 CGQLDKAVE--LFKVAPVK-----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           C QLD  +   L  V  +K      +    A+I+ Y KFG++  AE +F++M  +++V+W
Sbjct: 250 CVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSW 309

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+++A + +N      L +   M  +G+ P+  +L S+    + L +    + +H  V +
Sbjct: 310 NSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTR 369

Query: 227 SP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
                 D      +I MY K G ++ A K+F  +  KDV++WN++I+GY+Q+G   +A+ 
Sbjct: 370 RCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAID 429

Query: 286 LFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQ----------YFDSMVNDYGIAAK 334
           ++  M+   G  P+  T+V++L A +  G +  G++          YFD  V+       
Sbjct: 430 VYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS------- 482

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               TC+VD+ G+ GKL +A+ L  ++P +
Sbjct: 483 ----TCLVDMYGKCGKLADALSLFYEVPHQ 508



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 16/277 (5%)

Query: 42  NIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF---- 93
           +I LS  L+N      D+  A   F ++  KD  +WN+MIS + +  +   A D F    
Sbjct: 74  SIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFL 133

Query: 94  -LAMPEKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKV 148
             +  + +  ++  +I     CG LD   ++     K+     V    + I  Y +FG V
Sbjct: 134 STSFLQSDHYTFPPVIRA---CGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFV 190

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            LA  LFD M  +++ TWNAMI+G+  N    + L++   M    +  ++ ++SS+L  C
Sbjct: 191 SLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC 250

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
             L  +  G  +H    K  L  D      LI+MY K G+L  A  +F +++ +D+V+WN
Sbjct: 251 VQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWN 310

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           ++++ + Q+ K   AL +++KM   G+ PD +T V+L
Sbjct: 311 SLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSL 347



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 18/281 (6%)

Query: 111 YIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           ++ C ++  A +L  +  V    +S+     +I+ Y   G +  A   FD++ TK++ TW
Sbjct: 50  FLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTW 109

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           N+MI+ Y         +      +    ++ +  +   V+  C +L     G++VH LV 
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVL 166

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K     D       I  Y + G +  AC LF  +  +D+ TWNAMISG+  +GK  +AL 
Sbjct: 167 KLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI--AAKPDHYTC--M 341
           +FD+M+ + +  DS+T  +LL  C     +  G+     +++ Y I    + D + C  +
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV-----LIHVYAIKLGLEFDLFVCNAL 281

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           +++  + G+L  A  +  +M  +   + + +LL+A   +K+
Sbjct: 282 INMYAKFGELRSAETIFNQMKVRDIVS-WNSLLAAFEQNKK 321


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/616 (37%), Positives = 349/616 (56%), Gaps = 51/616 (8%)

Query: 4   KTTVNWNSVLAGFAKQ---RGKLKDAQELF--DKIPQPDVVSYNIMLSCI----LLNSDD 54
           K  V+WN+++ G++K+   RG  +  QE+   +K+   +V   N++ +C     LL+  +
Sbjct: 363 KNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKE 422

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +      F+   +KD    N  ++ + +  ++  A  +F  M  K   SW+A+I  + + 
Sbjct: 423 IHGYA--FRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQN 480

Query: 115 GQLDKAVELFKVA------PVKSVVA---------------------------------W 135
           G   K+++LF V       P +  +                                   
Sbjct: 481 GFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIG 540

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            +++S Y++   + L + +FD+M  K+LV WN MI G+ +N    + L   R M+  GI+
Sbjct: 541 ISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIK 600

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   +++ VL  CS +S+L+LGK+VH    K+ L +D      LI MY KCG +E +  +
Sbjct: 601 PQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNI 660

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  KD   WN +I+GY  HG G KA+ LF+ M+++G +PDS TF+ +L+ACNHAGLV
Sbjct: 661 FDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLV 720

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G++Y   M N YG+  K +HY C+VD+LGRAG+L EA+ L+ +MP +P   I+ +LLS
Sbjct: 721 TEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLS 780

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           +CR +  L++ E  +  L  L P N A  YV L+N+YA + KWD+V ++R  MKEN + K
Sbjct: 781 SCRNYGDLEIGEEVSKKLLELEP-NKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHK 839

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
             G SWIE+G +V+ F   D    E   I +   +LEK++   GY PD    LH + EE 
Sbjct: 840 DAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEG 899

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           K ++L  HSEKLAI+FGL+    GT +RV KNLR+C DCH A K +S + KR+IIVRD  
Sbjct: 900 KIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNK 959

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHFK+G C+CGD+W
Sbjct: 960 RFHHFKNGLCTCGDFW 975



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMI 190
           VV  T +I+ Y   G    +  +FD    K+L  +NA+++GY  N+   D + L L ++ 
Sbjct: 128 VVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLS 187

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              + P+  +L  V   C+ ++ ++LG+ VH L  K+    D      LI+MY KCG +E
Sbjct: 188 ATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVE 247

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALLL 307
            A K+F  ++ +++V+WN+++   +++G   +   +F ++   ++EG+ PD  T V ++ 
Sbjct: 248 SAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIP 307

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           AC   G V +G+     +    GI  +      +VD+  + G L EA
Sbjct: 308 ACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEA 353



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 129/256 (50%), Gaps = 13/256 (5%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAMISGYIECGQLDKA 120
           KD   +N ++SG+ +      A  LFL +       P+  ++   A     +   +L +A
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEA 216

Query: 121 VELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS- 177
           V     K           A+I+ Y K G V+ A K+F+ M  +NLV+WN+++    EN  
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 178 WAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           + E      R++I    G+ P+ +++ +V+  C+ +  +++G  VH L FK  + ++ T 
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTV 336

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEG 294
              L+ MY KCG L +A  LF     K+VV+WN +I GY++ G       L  +M ++E 
Sbjct: 337 NNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK 396

Query: 295 MKPDSITFVALLLACN 310
           ++ + +T + +L AC+
Sbjct: 397 VRVNEVTVLNVLPACS 412



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           +L  C H  ++ +G++VH LV  S  L  D    T +I+MY  CG   D+  +F   + K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 263 DVVTWNAMISGYAQHGKGEKALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           D+  +NA++SGY+++     A+ LF + +    + PD+ T   +  AC     V+LG
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/467 (46%), Positives = 291/467 (62%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + ++  Y   G +  A +LF   P KS+V+ TAM++ Y K G++D A  LFD M  ++ V
Sbjct: 110 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGV 169

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WN MI GY +N    + L L R M+    +PN  ++ SVL  C  L +L+ G+ VH  +
Sbjct: 170 CWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 229

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             + +  +    T L+ MY KCG LEDA  +F +I  KDVV WN+MI GYA  G  ++AL
Sbjct: 230 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEAL 289

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           +LF  M   G+ P +ITF+ +L AC H+G V  G   F+ M ++YGI  K +HY CMV+L
Sbjct: 290 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 349

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG + +A +L+K M  +P P ++GTLL ACR+H ++ L E     L + N AN +G 
Sbjct: 350 LGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN-SGT 408

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           Y+ L+NIYAA+  WD VAR+R  MK++ V K PG S IEV   VHEF +G   HP+   I
Sbjct: 409 YILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEI 468

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +  L+E+   +K  GY P  +  LH +GE  KE+ L  HSEKLAIAFGLI    GT I++
Sbjct: 469 YMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKI 528

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH  TK IS I  R+I+VRD  RFHHF +G+CSCGDYW
Sbjct: 529 VKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 25/331 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  AQ+LFD +P+  +VS   ML+C   +  ++ AA   F  +  +D   WN MI G+
Sbjct: 120 GDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHG-ELDAARVLFDGMEERDGVCWNVMIDGY 178

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SV 132
            Q     +A  LF  M     + N V+  +++S   + G L+    +           +V
Sbjct: 179 TQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNV 238

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA++  Y K G ++ A  +FD++  K++V WN+MI GY    ++++ L+L + M  +
Sbjct: 239 HVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRM 298

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------K 245
           G+ P   +   +L  C H   +  G  +   +      KD   + P I  Y C      +
Sbjct: 299 GLHPTNITFIGILSACGHSGWVTEGWDIFNKM------KDEYGIEPKIEHYGCMVNLLGR 352

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            G +E A +L   +    D V W  ++     HGK     ++ + + D+ +  +S T++ 
Sbjct: 353 AGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYIL 411

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           L       G  D G+    +M+ D G+  +P
Sbjct: 412 LSNIYAAVGNWD-GVARLRTMMKDSGVKKEP 441



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 134/296 (45%), Gaps = 16/296 (5%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y   G+LD +V LF      SV  WTA+I G+   G  + A   + +M T+  V  NA  
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG-VEPNAFT 77

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSL---SSVLLGCSHLSSLQLGKQV--HQLVF 225
              +        LKL  +  G  +   A  L   S + +    L     G  V   Q +F
Sbjct: 78  FSSI--------LKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
            +   K   +LT +++ Y K G+L+ A  LF  ++ +D V WN MI GY Q+G   +AL 
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 189

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF +M     KP+ +T +++L AC   G ++ G ++  S + + GI       T +VD+ 
Sbjct: 190 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMY 248

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLS-ACRVHKRLDLAEFAAMNLFNLNPAN 400
            + G L +A  +  K+  K   A    ++  A     +  L  F +M    L+P N
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN 304



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 24/160 (15%)

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
           L  L   Y   G L+ +  LF   Q   V  W A+I G+A  G  E+AL  + +M  +G+
Sbjct: 12  LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV 71

Query: 296 KPDSITFVALLLACN-------HAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLG 346
           +P++ TF ++L  C        H+  V LG   FDS           D Y  T ++D+  
Sbjct: 72  EPNAFTFSSILKLCPIEPGKALHSQAVKLG---FDS-----------DLYVRTGLLDVYA 117

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           R G +V A  L   MP K   ++   +L+    H  LD A
Sbjct: 118 RGGDVVSAQQLFDTMPEKSLVSLT-AMLTCYAKHGELDAA 156



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 18/215 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFD 60
           ++  V+  + L     + G L+DA+ +FDKI   DVV++N M+    +   S + +  F 
Sbjct: 234 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK 293

Query: 61  FFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
              R+ +  T  ++  ++S       + +  D+F  M ++  +      +  M++     
Sbjct: 294 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRA 353

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           G +++A EL K   ++   V W  ++      GK+ L EK+ + +  +NL      I   
Sbjct: 354 GHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI--L 411

Query: 174 VENSWAE----DGLKLLRMMI---GLGIRPNASSL 201
           + N +A     DG+  LR M+   G+   P  SS+
Sbjct: 412 LSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 446


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 334/574 (58%), Gaps = 16/574 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIK 68
           N+VL  +AK  G+ + A+ +F  + + D VS+NI + +CI   S D++ +   F   P++
Sbjct: 151 NAVLDMYAKC-GQFERARRVFGAMAERDAVSWNIAIGACI--QSGDILGSMQLFDESPLR 207

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV------SWSAMISGYIECGQLDKAVE 122
           DT SWNT+ISG ++  + A A      M +   V      S + +++G +    L + + 
Sbjct: 208 DTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLH 267

Query: 123 --LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNL-VTWNAMIAGYVENS 177
             +   A        ++++  Y K G ++ A  +FD     T+++   W+ M+AGYV+N 
Sbjct: 268 GRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNG 327

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             E+ L L R M+  G+  +  +L+SV   C+++  ++ G+QVH  V K     D    +
Sbjct: 328 REEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLAS 387

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            ++ MY KCG+LEDA  +F     K++  W +M+  YA HG+G  A+ LF++M  E M P
Sbjct: 388 AIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTP 447

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           + IT V +L AC+H GLV  G  YF  M  +YGI    +HY C+VDL GR+G L +A + 
Sbjct: 448 NEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNF 507

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I++     +  ++ TLLSACR+H+  + A+ A+  L  L   +A G YV L+NIYA   K
Sbjct: 508 IEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDA-GSYVMLSNIYATNNK 566

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W D   +R+SM+E  V K PG SWI +   VH F +GD  HP+   I+  L++L +R+K 
Sbjct: 567 WHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKE 626

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
            GY    +  +H V +E +E  L FHSEKLAIAFG+I  P GTP+R+FKNLRVC DCH A
Sbjct: 627 IGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEA 686

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KYIS    REI+VRD  RFHHFKD +CSC D+W
Sbjct: 687 IKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 157/382 (41%), Gaps = 47/382 (12%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI-SGYIECGQLDKA 120
           F   P +    W   ISG  ++   A     F  M  +   + +A + +  + C      
Sbjct: 68  FDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGD 127

Query: 121 VE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-------- 164
           VE        + +      VV   A++  Y K G+ + A ++F  M  ++ V        
Sbjct: 128 VESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGA 187

Query: 165 -----------------------TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
                                  +WN +I+G + +  A D L  LR M   G+  N  + 
Sbjct: 188 CIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTY 247

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--- 258
           S+  +    L    LG+Q+H  V  + L  D    + L+ MYCKCG LE A  +F     
Sbjct: 248 STAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSP 307

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           + R     W+ M++GY Q+G+ E+AL LF +M  EG+  D  T  ++  AC + G+V+ G
Sbjct: 308 LTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQG 367

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            Q    +   +     P   + +VD+  + G L +A  +  +   K   A++ ++L +  
Sbjct: 368 RQVHGCVEKLWYKLDAP-LASAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLCSYA 425

Query: 379 VH--KRLDLAEFAAMNLFNLNP 398
            H   R+ +  F  M    + P
Sbjct: 426 SHGQGRIAIELFERMTAEKMTP 447



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCS 209
           A  +FDE PT+    W   I+G        DG++    M+  G   PNA  L++V+  C+
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            +  ++ GK+VH  + ++ +  D      ++ MY KCG  E A ++F  +  +D V+WN 
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 270 MISGYAQHGKGEKALRLFDK 289
            I    Q G    +++LFD+
Sbjct: 184 AIGACIQSGDILGSMQLFDE 203


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/518 (42%), Positives = 309/518 (59%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F+ +P KD   WN +ISG        ++  LF  M ++    N  + +A++        +
Sbjct: 363 FEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAI 422

Query: 118 DKAVELFKVAPVKSVVAWTAMISG----YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               ++  +A     ++ + +++G    Y K   +  A K+F+E  + N++ + +MI   
Sbjct: 423 SDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITAL 482

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    ED +KL   M+  G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D 
Sbjct: 483 SQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDV 542

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            A   L+  Y KCG +EDA   F  +  K VV+W+AMI G AQHG G++AL +F +M DE
Sbjct: 543 FAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDE 602

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + P+ IT  ++L ACNHAGLVD    YF SM   +GI    +HY+CM+DLLGRAGKL +
Sbjct: 603 RIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDD 662

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A++L+  MPF+   A++G LL+A RVH+  +L + AA  LF L P   +G +V LAN YA
Sbjct: 663 AMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEP-EKSGTHVLLANTYA 721

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +   WD+VA++R  MK++ V K P  SW+E+   VH F  GD+ HP    I+ KL+EL  
Sbjct: 722 SAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGD 781

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
            M  AGYVP+LE  LH V +  KE LL  HSE+LA+AF LI  P G PIRV KNLR+C D
Sbjct: 782 LMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRD 841

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A K+IS I  REII+RD  RFHHF DG CSCGDYW
Sbjct: 842 CHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 39/271 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY--------------------IE 113
           N ++S + + +    AR +F   P+   VSWS++++ Y                    + 
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 114 CGQLDKAVELFKVAP-------VKSVVAWT----------AMISGYMKFGKVDLAEKLFD 156
           C +    + L K AP       V +V   T          A+++ Y  FG VD A ++FD
Sbjct: 101 CNEFALPIVL-KCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFD 159

Query: 157 EMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           E    +N V+WN M++ +V+N    D ++L   M+  G+RPN    S V+  C+    L+
Sbjct: 160 EAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLE 219

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            G++VH +V ++   KD      L+ MY K GD+  A  +F ++ + DVV+WNA ISG  
Sbjct: 220 AGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCV 279

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            HG  + AL L  +MK  G+ P+  T  ++L
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 6/244 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S Y K      A ++FDE P    V+W++++  Y  N+   + L   R M   G+R N
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCN 102

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +L  ++L C+      LG QVH +   + L  D      L++MY   G +++A ++F 
Sbjct: 103 EFAL-PIVLKCA--PDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFD 159

Query: 258 EIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           E  R ++ V+WN M+S + ++ +   A+ LF +M   G++P+   F  ++ AC  +  ++
Sbjct: 160 EAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLE 219

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G +   +MV   G          +VD+  + G +  A  +  K+P K     +   +S 
Sbjct: 220 AG-RKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFISG 277

Query: 377 CRVH 380
           C +H
Sbjct: 278 CVLH 281



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  +AK  G ++DA   F  +P   VVS++ M+   L        A D F+R+  + 
Sbjct: 546 NALVYTYAKC-GSIEDADLAFSGLPDKGVVSWSAMIGG-LAQHGHGKRALDVFRRMVDER 603

Query: 70  TASWNTMISGFVQKKNMA----KARDLFLAMPE-----KNSVSWSAMISGYIECGQLDKA 120
            A  +  ++  +   N A    +A+  F +M E     +    +S MI      G+LD A
Sbjct: 604 IAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDA 663

Query: 121 VELFKVAPVKSVVA-WTAMISGYM-----KFGKVDLAEKLFDEMPTKN 162
           +EL    P ++  A W A+++        + GK+  AEKLF   P K+
Sbjct: 664 MELVNSMPFEANAAVWGALLAASRVHRDPELGKL-AAEKLFVLEPEKS 710


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/594 (39%), Positives = 336/594 (56%), Gaps = 74/594 (12%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA ++FDK P  DVV                                S+  +I 
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVV--------------------------------SYTALIK 208

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSV 132
           G+  +  +  A+ LF  +P K+ VSW+AMISGY E G   +A+ELFK      V P +S 
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268

Query: 133 VA--------------------W-------------TAMISGYMKFGKVDLAEKLFDEMP 159
           +                     W              A+I  Y K G+++ A  LF+ +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            K++++WN +I GY   +  ++ L L + M+  G  PN  ++ S+L  C+HL ++ +G+ 
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388

Query: 220 VHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +H  + K    +   ++  T LI MY KCGD+E A ++F  I  K + +WNAMI G+A H
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G+ + +  LF +M+  G++PD ITFV LL AC+H+G++DLG   F +M  DY +  K +H
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CM+DLLG +G   EA ++I  M  +P   I+ +LL AC++H  ++L E  A NL  + 
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P N  G YV L+NIYA+  +W++VA+ R  + +  + K+PG S IE+ +VVHEF  GD+ 
Sbjct: 569 PENP-GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF 627

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP    I+  L+E+E  ++ AG+VPD    L  + EE KE  L  HSEKLAIAFGLI   
Sbjct: 628 HPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTK 687

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            GT + + KNLRVC +CH ATK IS I KREII RD TRFHHF+DG CSC DYW
Sbjct: 688 PGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 201/401 (50%), Gaps = 41/401 (10%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-----------------AFDFFQRL 65
           L  A  +F  I +P+++ +N M     L+SD V A                  F F  + 
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 66  PIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
             K  A      I G V K  +    DL++          +++IS Y++ G+L+ A ++F
Sbjct: 144 CAKSKAFKEGQQIHGHVLK--LGCDLDLYVH---------TSLISMYVQNGRLEDAHKVF 192

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
             +P + VV++TA+I GY   G ++ A+KLFDE+P K++V+WNAMI+GY E    ++ L+
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L + M+   +RP+ S++ +V+  C+   S++LG+QVH  +       +   +  LI +Y 
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG+LE AC LF  +  KDV++WN +I GY      ++AL LF +M   G  P+ +T ++
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 372

Query: 305 LLLACNHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +L AC H G +D+G     Y D  +   G+       T ++D+  + G +  A  +   +
Sbjct: 373 ILPACAHLGAIDIGRWIHVYIDKRLK--GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430

Query: 362 PFKPQPA----IFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
             K   +    IFG  +   R     DL  F+ M    + P
Sbjct: 431 LHKSLSSWNAMIFGFAMHG-RADASFDL--FSRMRKIGIQP 468



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 121/251 (48%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F  +   NL+ WN M  G+  +S     LKL   MI LG+ PN+ +   V
Sbjct: 81  FEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC----------- 253
           L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA            
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200

Query: 254 --------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                               KLF EI  KDVV+WNAMISGYA+ G  ++AL LF  M   
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T V ++ AC  +G ++LG Q     ++D+G  +       ++DL  + G+L  
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319

Query: 354 AVDLIKKMPFK 364
           A  L +++P+K
Sbjct: 320 ACGLFERLPYK 330



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 163/399 (40%), Gaps = 84/399 (21%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSCILLNS----- 52
           VK  V+WN++++G+A + G  K+A ELF  + + +V         ++ +C    S     
Sbjct: 228 VKDVVSWNAMISGYA-ETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 286

Query: 53  ------DD----------------------VVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                 DD                      +  A   F+RLP KD  SWNT+I G+    
Sbjct: 287 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 346

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
              +A  LF  M       N V+  +++      G +D  + + ++    +K V      
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 406

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A ++F+ +  K+L +WNAMI G+  +  A+    L   M  +GI
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 466

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P+  +   +L  CSH   L LG+ + + + +         +TP +  Y    DL     
Sbjct: 467 QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD------YKMTPKLEHYGCMIDLLGHSG 520

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF E +    +                             M+PD + + +LL AC   G 
Sbjct: 521 LFKEAEEMINMM---------------------------EMEPDGVIWCSLLKACKMHGN 553

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           V+LG  + ++++        P  Y  + ++   AG+  E
Sbjct: 554 VELGESFAENLIKIE--PENPGSYVLLSNIYASAGRWNE 590


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/512 (41%), Positives = 317/512 (61%), Gaps = 10/512 (1%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEKN------SVSWSAMISGYIECGQLDKAVE 122
            D ASWN ++ G+++     KA + F  M E        +++ +   SG +   +  K ++
Sbjct: 1063 DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQ 1122

Query: 123  LFKVAPVKSVVAW--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + +    +   W  + ++  Y+K G +  A +LF E+   + V W  MI+GY+EN   +
Sbjct: 1123 AYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDED 1182

Query: 181  DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
              L +  +M   G++P+  + ++++   S L++L+ GKQ+H  V K     D    T L+
Sbjct: 1183 HALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLV 1242

Query: 241  SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             MYCKCG ++DA ++F ++  + VV WNAM+ G AQHG  ++AL LF  M+  G++PD +
Sbjct: 1243 DMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKV 1302

Query: 301  TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
            TF+ +L AC+H+GL     +YFD+M   YGI  + +HY+C+VD LGRAG++ EA ++I  
Sbjct: 1303 TFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIAS 1362

Query: 361  MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
            MPFK   +++  LL ACR     + A+  A  L  L+P++++  YV L+NIYAA ++WDD
Sbjct: 1363 MPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS-AYVLLSNIYAASRQWDD 1421

Query: 421  VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG- 479
            V   R  MK  NV K PG+SWI+V   VH F   DR HP+   I+EK+++L KR++  G 
Sbjct: 1422 VTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGS 1481

Query: 480  YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
            YVPD +F L  V EE KE+ L +HSEKLAIAFGLI  P    IRV KNLRVCGDCH A K
Sbjct: 1482 YVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIK 1541

Query: 540  YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             IS + +REI++RD  RFHHF++GTCSCGDYW
Sbjct: 1542 CISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 29/364 (7%)

Query: 55   VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISG 110
            V AA   F   P  D  SWNTMIS + Q     +A    RDL     + +  + ++++  
Sbjct: 945  VYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRA 1004

Query: 111  YIECGQLDKA----------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
               C   D+           V   K   +      TA+I  Y K GK+D AE L      
Sbjct: 1005 ---CSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYD 1061

Query: 161  KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
             +L +WNA++ GY++++ +   L+   +M  +GI  +  +L++ +     L +L+ GKQ+
Sbjct: 1062 FDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQI 1121

Query: 221  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
                 K     D    + ++ MY KCGD+ +A +LF EI R D V W  MISGY ++G  
Sbjct: 1122 QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDE 1181

Query: 281  EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DYGIAAKPDHY- 338
            + AL ++  M+  G++PD  TF  L+ A +    ++ G Q   ++V  DY +    DH+ 
Sbjct: 1182 DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFV 1237

Query: 339  -TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
             T +VD+  + G + +A  + +KM  + +   +  +L     H  +D     A+NLF   
Sbjct: 1238 GTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVD----EALNLFRTM 1292

Query: 398  PANA 401
             +N 
Sbjct: 1293 QSNG 1296



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 205/504 (40%), Gaps = 92/504 (18%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
            G +  A+ LFDK+P+ D V +N+ML   + NS  D+ +  F  F R     D ++ + +I
Sbjct: 766  GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVI 825

Query: 78   SGFVQ----------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV- 126
             G             ++  A A  +F      N  +W+  ++ ++  GQ+  A++ FK  
Sbjct: 826  GGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTL 885

Query: 127  ----------------------------------------APVKSVVAWTAMISGYMKFG 146
                                                    APV  V    ++++ Y K G
Sbjct: 886  LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV--VPVSNSLMNMYSKAG 943

Query: 147  KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
             V  AEK F   P  +L++WN MI+ Y +N+   + +   R ++  G++P+  +L+SVL 
Sbjct: 944  VVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR 1003

Query: 207  GCS---HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
             CS         LG QVH    K  +  D+   T LI +Y K G +++A  L       D
Sbjct: 1004 ACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFD 1063

Query: 264  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV-------------------- 303
            + +WNA++ GY +  K  KAL  F  M + G+  D IT                      
Sbjct: 1064 LASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 304  -ALLLACNH-----AGLVDLGIQYFD--SMVNDYGIAAKPDH--YTCMVDLLGRAGKLVE 353
             A+ L  N+     +G++D+ I+  D  + +  +G  ++PD   +T M+      G    
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 354  AVD---LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
            A+    L++    +P    F TL+ A      L+  +    N+  L+ +        L +
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVD 1243

Query: 411  IYAAMKKWDDVARIRLSMKENNVV 434
            +Y       D  R+   M    VV
Sbjct: 1244 MYCKCGSVQDAYRVFRKMDVRKVV 1267



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 165/397 (41%), Gaps = 67/397 (16%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD----DVVAAFDFFQRLP---------I 67
            G L  A+++FDK    D+V++N +L+     +D    +V+  F  F  L           
Sbjct: 660  GSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLT 719

Query: 68   KDTASWNTMISGFVQKKN------------------------------MAKARDLFLAMP 97
                    ++SGFVQ                                 + +AR LF  MP
Sbjct: 720  LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779

Query: 98   EKNSVSWSAMISGYIECGQLDKAVELFKV----------APVKSVVAW-TAMISGYMKFG 146
            E+++V W+ M+  Y+E    D+A+  F            + +  V+    + +S   K  
Sbjct: 780  ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRH 839

Query: 147  KVDL---AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
               +   A K+F      N+  WN  +  ++        +   + ++   I  ++ +L  
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899

Query: 204  VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
            +L        L LG+Q+H LV KS           L++MY K G +  A K F+     D
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959

Query: 264  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
            +++WN MIS YAQ+    +A+  F  +  +G+KPD  T  ++L AC+     D G +YF 
Sbjct: 960  LISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFT 1015

Query: 324  --SMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEA 354
              S V+ Y    GI       T ++DL  + GK+ EA
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 22/253 (8%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
            D+  A + F  +   D  +W TMISG+++  +   A  ++  M     + +  +++ +I 
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 110  GYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                   L++  ++     K+         T+++  Y K G V  A ++F +M  + +V 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268

Query: 166  WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            WNAM+ G  ++   ++ L L R M   GI+P+  +   VL  CSH        +    +F
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328

Query: 226  KSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQH 277
            K      T  +TP I  Y        + G +++A  +   +  K   + + A++      
Sbjct: 1329 K------TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTK 1382

Query: 278  GKGEKALRLFDKM 290
            G  E A R+ DK+
Sbjct: 1383 GDAETAKRVADKL 1395



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE---NSWAE--DGLKLLRMMIGL 192
           +I+ Y K G +  A ++FD+   ++LVTWN+++A Y +   +S+    +G +L  ++   
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G      +L+ +L  C     +Q+ + VH    K     D      L+++YCK G +  A
Sbjct: 712 GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
             LF ++  +D V WN M+  Y ++   ++ALR F      G  PD
Sbjct: 772 RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           ++ L+LGK+ H  +  S    D      LI+MY KCG L  A ++F +   +D+VTWN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 271 ISGYAQHGKGE-----KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           ++ YAQ          +  RLF  +++ G     +T   LL  C  +G V +        
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-----ET 738

Query: 326 VNDYG--IAAKPDHYT--CMVDLLGRAGKLVEAVDLIKKMP 362
           V+ Y   I  + D +    +V++  + G + +A  L  KMP
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 315/531 (59%), Gaps = 41/531 (7%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------------- 124
           +V+   +  AR++   MPE+N VSW+AMISGY + G+  +A+ELF               
Sbjct: 86  YVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTL 145

Query: 125 --------------KVAPVKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPT 160
                         +V  V S+V  T          +++  Y K G +  A K+FD +P 
Sbjct: 146 ATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPE 205

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++ V+  A+I+GY +    ++ L L R +   G++ N  + +++L   S L+SL  GKQV
Sbjct: 206 RDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQV 265

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H L+ +  L         LI MY KCG L  + ++F  + ++  ++WNAM+ GY +HG G
Sbjct: 266 HGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIG 325

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           ++ ++LF  M +E +KPDS+T +A+L  C+H GLVD G+  FD +V +        HY C
Sbjct: 326 QEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGC 384

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           ++DLLGR+G+L +A+DLI+ MPF+P PAI+G+LL ACRVH  + + E  A  L ++ P N
Sbjct: 385 VIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGN 444

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
           A G YV L+NIYAA   W DV R+R  M EN V K P  SWI +  V+H F S +R HP 
Sbjct: 445 A-GNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPR 503

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+ K+KE+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P G 
Sbjct: 504 KKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGL 563

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I+V KNLR+C DCH   K++S +  REI +RD  RFH  KDG C+CGDYW
Sbjct: 564 TIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 7/230 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I  Y++ G +D A  + D MP +N+V+W AMI+GY ++    + L+L   M+  G +
Sbjct: 80  TRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCK 139

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            N  +L++VL  C    S+Q  +QVH LV K+         + L+ MY K G++++A K+
Sbjct: 140 ANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKV 199

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +D V+  A+ISGYAQ G  ++AL LF ++   GM+ + +TF  LL + +    +
Sbjct: 200 FDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASL 259

Query: 316 DLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + G Q    ++     + I  +      ++D+  + GKL+ +  +   MP
Sbjct: 260 NYGKQVHGLILRKELPFFIVLQ----NSLIDMYSKCGKLLYSRRVFDNMP 305



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 80/284 (28%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--------------- 65
           G L DA+ + D +P+ +VVS+  M+S     S     A + F R+               
Sbjct: 90  GALDDARNVLDGMPERNVVSWTAMISG-YSQSGRHAEALELFIRMLRAGCKANEFTLATV 148

Query: 66  ----PIKDTASWNTMISGFVQKK--------------------NMAKARDLFLAMPEKNS 101
               P+  +      +   V K                     N+ +AR +F  +PE+++
Sbjct: 149 LTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDT 208

Query: 102 VSWSAMISGYIECGQLDKAVELFK--------------------VAPVKS---------- 131
           VS +A+ISGY + G  D+A++LF+                    ++ + S          
Sbjct: 209 VSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGL 268

Query: 132 ---------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                    +V   ++I  Y K GK+  + ++FD MP ++ ++WNAM+ GY  +   ++ 
Sbjct: 269 ILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEV 328

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           ++L R M    ++P++ +L +VL GCSH   +  G  +  L+ K
Sbjct: 329 VQLFRTMTE-EVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVK 371



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           + +  C    +L  G+QVH  + K+         T LI +Y +CG L+DA  +   +  +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-HAGLVDLGIQY 321
           +VV+W AMISGY+Q G+  +AL LF +M   G K +  T   +L +C  H  +    ++ 
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQ--VEQ 163

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             S+V      +     + ++D+ G++G + EA  +   +P
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 15/163 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           NS++  ++K  GKL  ++ +FD +PQ   +S+N ML     +    +VV  F        
Sbjct: 282 NSLIDMYSKC-GKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVK 340

Query: 68  KDTASWNTMISGFVQKKNMAKARDLF-LAMPEKNSV----SWSAMISGYIECGQLDKAVE 122
            D+ +   ++SG      + +  D+F L + E+N+V     +  +I      GQL KA++
Sbjct: 341 PDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALD 400

Query: 123 LFKVAPVKSVVA-WTAMISG-----YMKFGKVDLAEKLFDEMP 159
           L +  P +   A W +++        +  G+V +A+KL D  P
Sbjct: 401 LIEHMPFEPTPAIWGSLLGACRVHINVSVGEV-VAQKLLDMEP 442


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/512 (41%), Positives = 317/512 (61%), Gaps = 10/512 (1%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEKN------SVSWSAMISGYIECGQLDKAVE 122
            D ASWN ++ G+++     KA + F  M E        +++ +   SG +   +  K ++
Sbjct: 1063 DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQ 1122

Query: 123  LFKVAPVKSVVAW--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + +    +   W  + ++  Y+K G +  A +LF E+   + V W  MI+GY+EN   +
Sbjct: 1123 AYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDED 1182

Query: 181  DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
              L +  +M   G++P+  + ++++   S L++L+ GKQ+H  V K     D    T L+
Sbjct: 1183 HALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLV 1242

Query: 241  SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             MYCKCG ++DA ++F ++  + VV WNAM+ G AQHG  ++AL LF  M+  G++PD +
Sbjct: 1243 DMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKV 1302

Query: 301  TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
            TF+ +L AC+H+GL     +YFD+M   YGI  + +HY+C+VD LGRAG++ EA ++I  
Sbjct: 1303 TFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIAS 1362

Query: 361  MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
            MPFK   +++  LL ACR     + A+  A  L  L+P++++  YV L+NIYAA ++WDD
Sbjct: 1363 MPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS-AYVLLSNIYAASRQWDD 1421

Query: 421  VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG- 479
            V   R  MK  NV K PG+SWI+V   VH F   DR HP+   I+EK+++L KR++  G 
Sbjct: 1422 VTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGS 1481

Query: 480  YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
            YVPD +F L  V EE KE+ L +HSEKLAIAFGLI  P    IRV KNLRVCGDCH A K
Sbjct: 1482 YVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIK 1541

Query: 540  YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             IS + +REI++RD  RFHHF++GTCSCGDYW
Sbjct: 1542 CISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 29/364 (7%)

Query: 55   VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISG 110
            V AA   F   P  D  SWNTMIS + Q     +A    RDL     + +  + ++++  
Sbjct: 945  VYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRA 1004

Query: 111  YIECGQLDKA----------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
               C   D+           V   K   +      TA+I  Y K GK+D AE L      
Sbjct: 1005 ---CSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYD 1061

Query: 161  KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
             +L +WNA++ GY++++ +   L+   +M  +GI  +  +L++ +     L +L+ GKQ+
Sbjct: 1062 FDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQI 1121

Query: 221  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
                 K     D    + ++ MY KCGD+ +A +LF EI R D V W  MISGY ++G  
Sbjct: 1122 QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDE 1181

Query: 281  EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DYGIAAKPDHY- 338
            + AL ++  M+  G++PD  TF  L+ A +    ++ G Q   ++V  DY +    DH+ 
Sbjct: 1182 DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFV 1237

Query: 339  -TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
             T +VD+  + G + +A  + +KM  + +   +  +L     H  +D     A+NLF   
Sbjct: 1238 GTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVD----EALNLFRTM 1292

Query: 398  PANA 401
             +N 
Sbjct: 1293 QSNG 1296



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 205/504 (40%), Gaps = 92/504 (18%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI-KDTASWNTMI 77
            G +  A+ LFDK+P+ D V +N+ML   + NS  D+ +  F  F R     D ++ + +I
Sbjct: 766  GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVI 825

Query: 78   SGFVQ----------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV- 126
             G             ++  A A  +F      N  +W+  ++ ++  GQ+  A++ FK  
Sbjct: 826  GGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTL 885

Query: 127  ----------------------------------------APVKSVVAWTAMISGYMKFG 146
                                                    APV  V    ++++ Y K G
Sbjct: 886  LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPV--VPVSNSLMNMYSKAG 943

Query: 147  KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
             V  AEK F   P  +L++WN MI+ Y +N+   + +   R ++  G++P+  +L+SVL 
Sbjct: 944  VVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR 1003

Query: 207  GCS---HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
             CS         LG QVH    K  +  D+   T LI +Y K G +++A  L       D
Sbjct: 1004 ACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFD 1063

Query: 264  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV-------------------- 303
            + +WNA++ GY +  K  KAL  F  M + G+  D IT                      
Sbjct: 1064 LASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQA 1123

Query: 304  -ALLLACNH-----AGLVDLGIQYFD--SMVNDYGIAAKPDH--YTCMVDLLGRAGKLVE 353
             A+ L  N+     +G++D+ I+  D  + +  +G  ++PD   +T M+      G    
Sbjct: 1124 YAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDH 1183

Query: 354  AVD---LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
            A+    L++    +P    F TL+ A      L+  +    N+  L+ +        L +
Sbjct: 1184 ALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVD 1243

Query: 411  IYAAMKKWDDVARIRLSMKENNVV 434
            +Y       D  R+   M    VV
Sbjct: 1244 MYCKCGSVQDAYRVFRKMDVRKVV 1267



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 165/397 (41%), Gaps = 67/397 (16%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD----DVVAAFDFFQRLP---------I 67
            G L  A+++FDK    D+V++N +L+     +D    +V+  F  F  L           
Sbjct: 660  GSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLT 719

Query: 68   KDTASWNTMISGFVQKKN------------------------------MAKARDLFLAMP 97
                    ++SGFVQ                                 + +AR LF  MP
Sbjct: 720  LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779

Query: 98   EKNSVSWSAMISGYIECGQLDKAVELFKV----------APVKSVVAW-TAMISGYMKFG 146
            E+++V W+ M+  Y+E    D+A+  F            + +  V+    + +S   K  
Sbjct: 780  ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRH 839

Query: 147  KVDL---AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
               +   A K+F      N+  WN  +  ++        +   + ++   I  ++ +L  
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVI 899

Query: 204  VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
            +L        L LG+Q+H LV KS           L++MY K G +  A K F+     D
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959

Query: 264  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
            +++WN MIS YAQ+    +A+  F  +  +G+KPD  T  ++L AC+     D G +YF 
Sbjct: 960  LISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFT 1015

Query: 324  --SMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEA 354
              S V+ Y    GI       T ++DL  + GK+ EA
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 22/253 (8%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
            D+  A + F  +   D  +W TMISG+++  +   A  ++  M     + +  +++ +I 
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208

Query: 110  GYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                   L++  ++     K+         T+++  Y K G V  A ++F +M  + +V 
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268

Query: 166  WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            WNAM+ G  ++   ++ L L R M   GI+P+  +   VL  CSH        +    +F
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328

Query: 226  KSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQH 277
            K      T  +TP I  Y        + G +++A  +   +  K   + + A++      
Sbjct: 1329 K------TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTK 1382

Query: 278  GKGEKALRLFDKM 290
            G  E A R+ DK+
Sbjct: 1383 GDAETAKRVADKL 1395



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE---NSWAE--DGLKLLRMMIGL 192
           +I+ Y K G +  A ++FD+   ++LVTWN+++A Y +   +S+    +G +L  ++   
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G      +L+ +L  C     +Q+ + VH    K     D      L+++YCK G +  A
Sbjct: 712 GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
             LF ++  +D V WN M+  Y ++   ++ALR F      G  PD
Sbjct: 772 RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           ++ L+LGK+ H  +  S    D      LI+MY KCG L  A ++F +   +D+VTWN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 271 ISGYAQHGKGE-----KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           ++ YAQ          +  RLF  +++ G     +T   LL  C  +G V +        
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-----ET 738

Query: 326 VNDYG--IAAKPDHYT--CMVDLLGRAGKLVEAVDLIKKMP 362
           V+ Y   I  + D +    +V++  + G + +A  L  KMP
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/505 (42%), Positives = 303/505 (60%), Gaps = 8/505 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------V 126
           ++ IS + +      A  +F  MP ++ VSW+AMI+G+   G  D+A+E+FK        
Sbjct: 162 HSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGS 221

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P    +A      G  K   +    ++FD M  K L++WNAM+A Y  N +    ++L 
Sbjct: 222 MPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELF 281

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
            +M    + P++ +L++VL  C  LS+  +GK++H+++ +  +C +      L+ MY  C
Sbjct: 282 MLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASC 341

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L+DA ++F  +  +DV++W ++IS Y +HG G +A+ LF+KM  +G++PDSI FVA+L
Sbjct: 342 GCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVL 401

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+HAGL+  G  YFDSM + Y I  K +HYTCMVDLLGRAG + EA D I  M  +P 
Sbjct: 402 AACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPN 461

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL ACR+H  +D+   AA NLF+L P    G YV L+N+YA   +W DV  +R 
Sbjct: 462 ERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQ-TGYYVLLSNMYARAGRWADVTSVRS 520

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M    + K PG S +E+G  VH F  GDR HP+   I+ KL EL  +++  GY P++E 
Sbjct: 521 VMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEA 580

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE  L  HSEKLAIAF L+    GT IRV  NLR C DCH A K IS I  
Sbjct: 581 TLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITC 640

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI+++DT R HH   G CSCGDYW
Sbjct: 641 REIVLKDTNRIHHIVQGVCSCGDYW 665



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 17/234 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCI-LLNSDD 54
           M  +  V+WN+++AGFA+  G    A E+F +        PD  +   +L  +     DD
Sbjct: 184 MPHRDVVSWNAMIAGFARV-GLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDD 242

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI-- 112
           +      F  +  K+  SWN M++ +   +   KA +LF+ M EK+ V   ++    +  
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLM-EKDEVEPDSITLATVLP 301

Query: 113 ECGQLD------KAVELFKVAPV-KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            CG+L       +  E+ K   +  +++   A++  Y   G +  A ++FD M  +++++
Sbjct: 302 PCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS 361

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
           W ++I+ Y ++    + + L   M+G G+ P++ +  +VL  CSH   L  GK 
Sbjct: 362 WTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKH 415



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 18/253 (7%)

Query: 138 MISGYMKFGKVDLAEKLF-----DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-- 190
           +I  Y     + LA  +      D       V +N +I     +S   D L L   M   
Sbjct: 56  LIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPR 115

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G    P+  +    L  CS    L LG Q+H  V K  L ++       ISMY +CG  E
Sbjct: 116 GPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPE 175

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLAC 309
           DA ++F  +  +DVV+WNAMI+G+A+ G  ++A+ +F + +  +G  PD+ T   +L A 
Sbjct: 176 DAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAM 235

Query: 310 NHAGLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD---LIKKMPFK 364
            +A   D+    + FD+M     I+     +  M+ +       V+AV+   L++K   +
Sbjct: 236 GNAKPDDIRFVRRVFDNMQFKELIS-----WNAMLAVYANNEFHVKAVELFMLMEKDEVE 290

Query: 365 PQPAIFGTLLSAC 377
           P      T+L  C
Sbjct: 291 PDSITLATVLPPC 303



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 67/282 (23%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           ++V    + IS Y + G+ + A ++FD MP +++V+WNAMIAG+      +  +++ +  
Sbjct: 156 RNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQF 215

Query: 190 IGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           + L G  P+A +++ +L    +                                  K  D
Sbjct: 216 VVLQGSMPDAGTMAGILPAMGN---------------------------------AKPDD 242

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +    ++F  +Q K++++WNAM++ YA +    KA+ LF  M+ + ++PDSIT   +L  
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPP 302

Query: 309 CNHAGLVDLGIQYFDSM------------------------------VNDYGIAAKPDHY 338
           C       +G +  + +                              + D   A     +
Sbjct: 303 CGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISW 362

Query: 339 TCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
           T ++   G+ G   EAVDL +KM     +P    F  +L+AC
Sbjct: 363 TSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAAC 404



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 118/269 (43%), Gaps = 25/269 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  ++WN++LA +A     +K A ELF  + + +V   +I L+ +L    ++ +AF 
Sbjct: 253 MQFKELISWNAMLAVYANNEFHVK-AVELFMLMEKDEVEPDSITLATVLPPCGEL-SAFS 310

Query: 61  FFQRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +R+           +    N ++  +     +  AR++F  M  ++ +SW+++IS Y 
Sbjct: 311 VGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYG 370

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT--- 165
           + G   +AV+LF+    + +    +A+ A+++     G +   +  FD M ++  +    
Sbjct: 371 KHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKA 430

Query: 166 --WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
             +  M+          +    +  M+   I PN     ++L  C   S++ +G      
Sbjct: 431 EHYTCMVDLLGRAGCINEAYDFITTML---IEPNERVWGALLQACRIHSNMDIGLVAADN 487

Query: 224 VFKSPLCKDTTALTPLIS-MYCKCGDLED 251
           +F   L  + T    L+S MY + G   D
Sbjct: 488 LFS--LVPEQTGYYVLLSNMYARAGRWAD 514


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/519 (42%), Positives = 316/519 (60%), Gaps = 12/519 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN---------SVSWSAMISGYI 112
           F+    K + +W+++IS F Q +    A   F  M  +N         S + +  I G  
Sbjct: 112 FEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRC 171

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           + G+    + + K      V   ++++  Y K G +  A  +FDEMP +N+V+W+ MI G
Sbjct: 172 DVGKSVHCL-VIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYG 230

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +    E+ ++L +  +  G+  N  +LSSV+  C   + L+LGKQ+H L FK+     
Sbjct: 231 YTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLS 290

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               + LIS+Y KCG +E A ++F E+  K++  WNAM+   AQH   ++A  LF KM++
Sbjct: 291 GFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMEN 350

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            GM+P+ ITF+ +L AC+HAGLV+ G +YF +++  Y I     HY  MVDLLGRAGKL 
Sbjct: 351 AGMRPNFITFLCVLYACSHAGLVEEGKKYF-ALMKKYEIEPGTQHYASMVDLLGRAGKLQ 409

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA+ +IK MP +P  +++G  ++ CR+H   DLA FAA  +F L  A ++G +V L+N Y
Sbjct: 410 EALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELG-AVSSGLHVMLSNAY 468

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           AA  +++D A+ R  +++  V K  G SWIE G  VH+F +GDR H  +  I++KL++L 
Sbjct: 469 AAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLG 528

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           + M+ AGYV D  F L  VG E K Q + +HSE+LAIAFGLI +PLG PIR+ KNLRVCG
Sbjct: 529 EEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCG 588

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K+IS +  R IIVRD  RFH F+DG CSC DYW
Sbjct: 589 DCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y K     L+ ++F+E   K+  TW+++I+ + +N      ++    MIG  + P+
Sbjct: 95  LINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPD 154

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
                S    C+ L    +GK VH LV K+    D    + L+ MY KCGD+++A  +F 
Sbjct: 155 DHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFD 214

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E+  ++VV+W+ MI GY Q G+ E+A+RLF +   EG+  +  T  +++  C  A L++L
Sbjct: 215 EMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLEL 274

Query: 318 GIQY----FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           G Q     F +  +  G        + ++ L  + G +  A  +  ++P K    ++  +
Sbjct: 275 GKQIHGLCFKTSYDLSGFVG-----SSLISLYSKCGLIEGAYRVFDEVPIK-NLGMWNAM 328

Query: 374 LSAC--RVHKRLDLAEFAAMNLFNLNP-----------ANAAGCYVQLANIYAAMKKWD 419
           L AC    H +     F  M    + P            + AG   +    +A MKK++
Sbjct: 329 LIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYE 387



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 152/340 (44%), Gaps = 52/340 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAF 59
           K++  W+SV++ FA+    +   Q     I +     D +  +   +C +L   DV  + 
Sbjct: 118 KSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS- 176

Query: 60  DFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
                L IK     D    ++++  + +  ++ +AR++F  MP +N VSWS MI GY + 
Sbjct: 177 --VHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQL 234

Query: 115 GQLDKAVELFKVA----------PVKSVV-----------------------------AW 135
           G+ ++A+ LFK A           + SV+                               
Sbjct: 235 GEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVG 294

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +++IS Y K G ++ A ++FDE+P KNL  WNAM+    +++  ++   L   M   G+R
Sbjct: 295 SSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMR 354

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  +   VL  CSH   ++ GK+   L+ K  +   T     ++ +  + G L++A  +
Sbjct: 355 PNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSV 414

Query: 256 FLEIQRKDVVT-WNAMISGYAQHGKGEKALRLFDKMKDEG 294
              +  +   + W A I+G   HG  + A    DK+ + G
Sbjct: 415 IKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELG 454


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/552 (39%), Positives = 324/552 (58%), Gaps = 14/552 (2%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87
            L+ K+P P   S  +  S ++L S   V     F  +P KD  SWNT++ G  +     
Sbjct: 101 NLYCKLPAPPSHSPEMDGSAVVLESVRKV-----FDEMPEKDVVSWNTLVLGCAESGRHG 155

Query: 88  KA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMI 139
           +A    R+++    + +S + S+++  + E   + + +EL   A        V   +++I
Sbjct: 156 EALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLI 215

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y    + D + K+FD +P ++ + WN+M+AG  +N   ++ L L R M+  GI+P   
Sbjct: 216 DMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPV 275

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           + SS++  C +L+SL LGKQ+H  V +     +    + LI MYCKCG++  A ++F  I
Sbjct: 276 TFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRI 335

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           Q  D+V+W AMI G+A HG   +AL LFD+M+   +KP+ ITF+A+L AC+HAGLVD G 
Sbjct: 336 QSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGW 395

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           +YF+SM + YGI    +H+  + D LGR GKL EA + I  M  KP  +++ TLL AC+V
Sbjct: 396 KYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKV 455

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           HK   LAE  A  +F+L P  + G ++ L+N Y++  +W++ A +R SM++  + K P  
Sbjct: 456 HKNTVLAEEVAKKIFDLEP-RSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPAC 514

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SWIEV    H F + D+ HP    I + L    ++M   GYVP+ +     + EE K  +
Sbjct: 515 SWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSV 574

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L  HSEKLAI FG+I  P GT IRV KNLRVC DCH  TK+IS I  REI++RD  RFHH
Sbjct: 575 LCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHH 634

Query: 560 FKDGTCSCGDYW 571
           FKDG CSCGD+W
Sbjct: 635 FKDGICSCGDFW 646



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 47/226 (20%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD---------- 248
           +SL   L  C+ L    LG  +H L  +S    D  A   L+++YCK             
Sbjct: 59  TSLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDG 118

Query: 249 ----LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
               LE   K+F E+  KDVV+WN ++ G A+ G+  +AL L  +M  +G KPDS T  +
Sbjct: 119 SAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSS 178

Query: 305 LLLACNHAGLVDLGIQYF---------------DSMVNDYGIAAKPDHYTCMVDLL---- 345
           +L        V  G++                  S+++ Y    + D+   + D L    
Sbjct: 179 VLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 238

Query: 346 -----------GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
                       + G + EA+ L ++M     KP P  F +L+ AC
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPAC 284



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 14/238 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF- 59
           + V+  + WNS+LAG A Q G + +A  LF ++    +    +  S ++    ++ +   
Sbjct: 234 LPVRDAILWNSMLAGCA-QNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLL 292

Query: 60  -DFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                   I+     N  IS      + +  N++ AR +F  +   + VSW+AMI G+  
Sbjct: 293 GKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHAL 352

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G   +A+ LF    + ++    + + A+++     G VD   K F+ M     +  +  
Sbjct: 353 HGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLE 412

Query: 170 IAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
               + ++    G   +    + G+ I+P AS  S++L  C    +  L ++V + +F
Sbjct: 413 HHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIF 470


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/568 (41%), Positives = 337/568 (59%), Gaps = 15/568 (2%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQR----LPIKD 69
           A   G L  A +LFD+IP+PDV  YN M+   + I  +S + +  F    R    LP + 
Sbjct: 59  ASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRY 118

Query: 70  TASWNTMISG---FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           T  +     G    V +    +   + + + E N    +AMI  Y   G +D+A  +F  
Sbjct: 119 TFVFVFKACGNGLGVLEGEQIRVHAIKIGL-ESNLFVTNAMIRMYANWGLVDEARRVFDW 177

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
           +  + + +W  MI GY+  G++  A+++FDEM  +++V+W  +IAGYV+    ++ L L 
Sbjct: 178 SLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLF 237

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M+  G  PN  +L+S L  C++L +L  G+ +H  + KS +  +   L  L+ MY KC
Sbjct: 238 HEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKC 297

Query: 247 GDLEDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           G+++ A K+F +    +  V  WNAMI GYA HGK ++A+ LF++MK E + P+ +TFVA
Sbjct: 298 GEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVA 357

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           LL AC+H  LV+ G  YF SM + YGI  + +HY CMVDLLGR+G L EA + +  MP  
Sbjct: 358 LLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMA 417

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P   I+G LL ACR+HK ++  +     +  L+ ++  GC+V LAN+Y+A  +WD+   +
Sbjct: 418 PDATIWGALLGACRIHKDIERGQRIGKIIKELD-SDHIGCHVLLANLYSASGQWDEAKAV 476

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R  ++ +   K PG S IE+  V H+F  GDR HP+   ++  L E+  ++K AGYVP+ 
Sbjct: 477 RQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEF 536

Query: 485 -EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
            E  L    EE KE  L  HSEKLAIAFGLI  P GT IR+ KNLRVC DCH ATK+IS 
Sbjct: 537 GEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISK 596

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KREIIVRD  R+HHFKDG CSC DYW
Sbjct: 597 VYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 123/303 (40%), Gaps = 57/303 (18%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           +WN ++ G+    G++  A+E+FD++ + DVV                            
Sbjct: 185 SWNIMIGGYVGS-GEIGRAKEMFDEMSERDVV---------------------------- 215

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA--- 120
               SW T+I+G+VQ     +A DLF  M    P  N  + ++ ++       LD+    
Sbjct: 216 ----SWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWI 271

Query: 121 -VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF-DEMPTKNLV-TWNAMIAGYVENS 177
            V + K     +     +++  Y K G++D A K+F DE   K  V  WNAMI GY  + 
Sbjct: 272 HVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHG 331

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
            +++ + L   M    + PN  +  ++L  CSH   ++ G+      FKS     +  + 
Sbjct: 332 KSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRG----YFKS--MASSYGIE 385

Query: 238 PLISMYCKCGDLEDACKLFLEIQRK--------DVVTWNAMISGYAQHGKGEKALRLFDK 289
           P I  Y    DL     L  E +          D   W A++     H   E+  R+   
Sbjct: 386 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 445

Query: 290 MKD 292
           +K+
Sbjct: 446 IKE 448


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 335/575 (58%), Gaps = 15/575 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L   +     +  A  +FD  PQPD+  YN ++  +  ++     +F  F+ L  ++
Sbjct: 37  NKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREE 96

Query: 70  TASWNTMISGF----------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
               N     F          V +    +   + L + E N    +A+I  Y+    +  
Sbjct: 97  RLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGL-ENNLFVTNALIGMYVNLDFVVD 155

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A ++F  +P + + +W  M+SGY + GK+D A +LFDEMP K++V+W  MI+G ++  + 
Sbjct: 156 ARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYF 215

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + L +   M+  G+ PN  +L+S L  C++L +L  G+ +H  + K+ +  +   L  L
Sbjct: 216 MEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGL 275

Query: 240 ISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           I MY KCG+LE A KLF    R  + V  WNAMI G+A HGK ++A+ +F++MK E + P
Sbjct: 276 IDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSP 335

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           + +TFVALL AC+H   V+ G  YF+SM + Y +  + +HY C+VDLLGRAG+L EA ++
Sbjct: 336 NKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEI 395

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I  M   P  AI+G LLSAC++HK  ++ E     +  L+P N  GC+V LANIY+    
Sbjct: 396 ISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDP-NHLGCHVLLANIYSLTGN 454

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W++   +R  + E+   K PG S IE+  + H+F  GDR HP+   ++  L E+  ++K+
Sbjct: 455 WNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKI 514

Query: 478 AGYVPDL-EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
           AGY+P+  E  L     E +E  LL HSEKLAIAFGL+     TPIR+ KNLRVC DCH 
Sbjct: 515 AGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHL 574

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A K+IS +  REIIVRD  R+HHFKDGTCSC DYW
Sbjct: 575 AIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 324/521 (62%), Gaps = 11/521 (2%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQ 116
            F R+P++D  SWNT+I+G  Q     +A ++   M ++N    S + S+++  + E   
Sbjct: 155 LFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHAN 214

Query: 117 LDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           + K  E+   A      K V   +++I  Y K  +V+L+   F  +  ++ ++WN++IAG
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAG 274

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+N   + GL   R M+   ++P   S SSV+  C+HL++L LGKQ+H  + +     +
Sbjct: 275 CVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDN 334

Query: 233 TTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
               + L+ MY KCG+++ A  +F  +E+  +D+V+W A+I G A HG    A+ LF++M
Sbjct: 335 KFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM 394

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             +G+KP  + F+A+L AC+HAGLVD G +YF+SM  D+G+A   +HY  + DLLGRAG+
Sbjct: 395 LVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGR 454

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA D I  M  +P  +++ TLL+ACR HK ++LAE     +  ++P N  G +V ++N
Sbjct: 455 LEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNM-GAHVIMSN 513

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IY+A ++W D A++R+ M++  + K P  SWIEVG  VH F +GD+ HP    I+E L  
Sbjct: 514 IYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNI 573

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L ++M+  GYV D    LH V EE K  LL  HSE+LAIAFG+I    GT IRV KN+RV
Sbjct: 574 LLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRV 633

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           C DCH A K+++ I  REIIVRD +RFHHFK+G+CSCGDYW
Sbjct: 634 CVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 103/174 (59%)

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
           K+D   KLFD MP +++V+WN +IAG  +N   E+ L +++ M    +RP++ +LSS+L 
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILP 207

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
             +  +++  GK++H    +    KD    + LI MY KC  +E +   F  +  +D ++
Sbjct: 208 IFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAIS 267

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           WN++I+G  Q+G+ ++ L  F +M  E +KP  ++F +++ AC H   ++LG Q
Sbjct: 268 WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQ 321


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/539 (40%), Positives = 311/539 (57%), Gaps = 40/539 (7%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------- 124
           SWN +I G+V+  ++  AR LF  MP +N  +W+AM++G    G  ++++  F       
Sbjct: 2   SWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREG 61

Query: 125 -------------------KVAPVKSVVAW-------------TAMISGYMKFGKVDLAE 152
                               V   + V A+             +++   YM+ G +   E
Sbjct: 62  MQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGE 121

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
                +P+ N+V+ N  I+G  +N  AE  L+   +M G G+  NA +  S +  CS L+
Sbjct: 122 AALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLA 181

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L  G+Q+H L  K+ + K    +T L+ MY +CG L D+ ++ LE    D+V  +AMIS
Sbjct: 182 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 241

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
            Y  HG G+KA+ LF +M   G +P+ +TF+ LL AC+H+GL D G+  F+ M   YG+ 
Sbjct: 242 AYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 301

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HYTC+VDLLGR+G L EA DLI  MP +P   I+ TLLSAC+  K+ D+AE  A  
Sbjct: 302 PSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAER 361

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           +  L+P ++A  YV L+NI A   +W+DV+++R +M+E NV K PG SW+E+   +H+F 
Sbjct: 362 VIELDPHDSAS-YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFC 420

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           +GD  H     I E L+E+  R++  GY PD+    H + +E KE  L  HSEKLAIAF 
Sbjct: 421 TGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFA 480

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            + +P G PIRV KNLRVC DCH A K +S +  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 481 FLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 312/515 (60%), Gaps = 10/515 (1%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           AA D F R           ++  + +      AR  F   P ++    + M++ Y+  G+
Sbjct: 71  AAADLFVR---------TALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGE 121

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           + +A  +F     + +V+W  MI GY   G+VDLA ++F+ M  ++  +W++M++ Y + 
Sbjct: 122 VAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKG 181

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
             ++D L+L R M    + P+ +++ SVL  CS + +L +G +VHQ V  + +  D    
Sbjct: 182 RRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLG 241

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           T LI MY KCGD+E++ ++F  +  KDV+TW++MI G A HG G  AL LF +M  EG++
Sbjct: 242 TALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQ 301

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           P+ +TF+ +L++C H GLV  G +YF SM   +G+  K  HY CMVDLLGR+G + EA  
Sbjct: 302 PNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQ 361

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
           LI+ MPF+P   I+  LL ACR++K +++AE A   L  L+P +A G YV L+NIYA   
Sbjct: 362 LIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDP-HADGHYVLLSNIYAQAN 420

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
            W+ VA +R +++   + ++PG S IE    +HEF SGDR HP    I++ L E+  R++
Sbjct: 421 SWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLR 480

Query: 477 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
            AGY P     L  + E+ KE+ L  HSEKLA+AFGL+  P G+ +R+ KNLR C DCH 
Sbjct: 481 QAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHS 540

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A K I+ + +R++I+RD  RFHHF +G CSC DYW
Sbjct: 541 AIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 145/309 (46%), Gaps = 55/309 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            +++  +AK  G+   A+  FD+ P+ DV   N+ML+  +   + V  A   F  +  +D
Sbjct: 79  TALVEAYAKA-GRADLARAAFDEAPRRDVFLCNVMLAAYVTRGE-VAEARRVFDGMRERD 136

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---- 125
             SWNTMI G+     +  AR++F  M ++++ SWS+M+S Y +  +   A+EL++    
Sbjct: 137 MVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRA 196

Query: 126 --VAP---------------------------VKS------VVAWTAMISGYMKFGKVDL 150
             V P                           V+S      V   TA+I  Y K G ++ 
Sbjct: 197 ACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIEN 256

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           + ++F  MP K+++TW++MI G   + +  D L L   M+  G++PN  +   VL+ C+H
Sbjct: 257 SVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTH 316

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLFLEIQ-RK 262
           L  +  GK+     F S        +TP +  Y C      + G +E+A +L  ++    
Sbjct: 317 LGLVSDGKK----YFSS--MSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEP 370

Query: 263 DVVTWNAMI 271
           D V W A++
Sbjct: 371 DAVIWRALL 379


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 343/579 (59%), Gaps = 10/579 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           ++VK  V W  +++G AK  G L D Q L  + P  DV+S+  +++       + + V  
Sbjct: 168 IHVKDAVAWTMLISGLAKM-GMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGC 226

Query: 59  FDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGYIE 113
           F       I  D  +   ++S   + K++   R L L + EK   +      A+I  Y +
Sbjct: 227 FKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAK 286

Query: 114 CGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           CG    A ++F  +       +W A+I GY K G VD+A  LFDEM  ++++T+N+M+ G
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y+ +    + L L   M    +R +  ++ ++L  C+ L +LQ G+ +H  + +  +  D
Sbjct: 347 YIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEAD 406

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T L+ MY KCG +++A  +F  + ++DV TW AMI+G A +G G+ AL  F +M+ 
Sbjct: 407 IYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRC 466

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G +P+S++++A+L AC+H+ L++ G  YFD M   Y I  + +HY CM+DLLGR+G L 
Sbjct: 467 DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA+DL+K MP +P   I+ ++LSACRVHK +DLA+ AA +L  L P +  G YVQL NIY
Sbjct: 527 EAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEP-DEDGVYVQLYNIY 585

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
              ++W++ ++IR+ M+E  V K  GYS I V   VH+F   D+ HP ++ I   L+E+ 
Sbjct: 586 IDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEIS 645

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            R+K  GY P        V EE KEQ LL HSEKLAIAFGLI +    P+ + KNLRVC 
Sbjct: 646 HRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCE 705

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K IS +  REIIVRD +RFHHF++GTCSC D+W
Sbjct: 706 DCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 172/396 (43%), Gaps = 46/396 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-- 67
           NS++         L+ A  LFD++P P    ++  L        D    F  F+R+    
Sbjct: 40  NSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAG 98

Query: 68  --KDTASWNTMISGFVQKK--------NMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
              D  +++ +                 M  A  L   +P       +++I  YI  G  
Sbjct: 99  VRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLA 158

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
             A   F    VK  VAWT +ISG  K G +   + L  + P +++++W ++IA Y   +
Sbjct: 159 ADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRAN 218

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
            A + +   + M+  GI P+  ++ +VL  C+ L  L+LG+ +H LV +  +      + 
Sbjct: 219 RAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVV 278

Query: 238 PLISMYCKCGDLEDA-----------------------CK---------LFLEIQRKDVV 265
            LI MY KCGD   A                       CK         LF E++ +D++
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDII 338

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           T+N+M++GY   G+  +AL LF  M+   ++ D+ T V LL AC   G +  G +   + 
Sbjct: 339 TFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG-RALHAC 397

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +    + A     T ++D+  + G++ EA  + ++M
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRM 433


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 320/557 (57%), Gaps = 40/557 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ AA + F+R+P ++  SWN +  G+++  ++  AR LF  MPE+N  +W+AM++G   
Sbjct: 153 DLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTN 212

Query: 114 CGQLDKAVELF--------------------------KVAPVKSVVAW------------ 135
            G  ++++  F                           V   + V A+            
Sbjct: 213 LGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCV 272

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ G +   E +   +P+ ++V+ N +IAG  +N  +E  L+   MM  +G+
Sbjct: 273 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 332

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             +  +  S +  CS L++L  G+Q+H  V K+ + K    +T L+ MY +CG L D+ +
Sbjct: 333 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 392

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F      D    +AMIS Y  HG G+KA+ LF +M + G +P  +TF+ALL AC+H+GL
Sbjct: 393 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGL 452

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            + G+  F+ M   YG+     HYTC+VDLLGR+G L EA  LI  MP  P   I+ TLL
Sbjct: 453 KEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLL 512

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SAC+  K  D+AE  A  +  L+P ++A  YV L+NI A  ++W DV+ +R +M++NNV 
Sbjct: 513 SACKTQKNFDMAERIAKRVIELDPHDSAS-YVLLSNIRATSRRWGDVSEVRKAMRDNNVR 571

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SW+E+   +H+F +GD  HP    I E L+E+  +++  GY PD+   LH + +E
Sbjct: 572 KEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE 631

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  REI+VRD 
Sbjct: 632 EKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDV 691

Query: 555 TRFHHFKDGTCSCGDYW 571
           +RFHHFKDG CSC DYW
Sbjct: 692 SRFHHFKDGRCSCRDYW 708



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 1/241 (0%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G L  A ELF+  P ++V++W  +  GY+K G +  A KLFDEMP +N+ TWNAM+
Sbjct: 148 YADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMV 207

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           AG     + E+ L     M   G+ P+   L SV   C+ L  +  G+QVH  V +S L 
Sbjct: 208 AGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLD 267

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    + L  MY +CG L++   +   +    +V+ N +I+G  Q+G  E AL  F  M
Sbjct: 268 RDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMM 327

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           +  G+  D +TFV+ + +C+    +  G Q     V   G+       TC+V +  R G 
Sbjct: 328 RSVGVAADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 386

Query: 351 L 351
           L
Sbjct: 387 L 387



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 43/197 (21%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            S +   C  L  L   +Q+H     S    D      L+  Y   GDL  A +LF  I 
Sbjct: 109 FSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 165

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDK------------------------------- 289
           R++V++WN +  GY ++G    A +LFD+                               
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 225

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG--- 346
           M+ EGM PD     ++   C  AGL D+        V+ Y + +  D   C+   L    
Sbjct: 226 MRREGMHPDEFGLGSVFRCC--AGLRDV---VTGRQVHAYVVRSGLDRDMCVGSSLAHMY 280

Query: 347 -RAGKLVEAVDLIKKMP 362
            R G L E   +++ +P
Sbjct: 281 MRCGCLQEGEAVLRMLP 297



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 124/302 (41%), Gaps = 35/302 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S LA    + G L++ + +   +P   +VS N +++    N D   A   F     +  
Sbjct: 273 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 332

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            A   T +S      ++A                  A+  G    GQ+ KA  + KV PV
Sbjct: 333 AADVVTFVSAISSCSDLA------------------ALAQGQQIHGQVMKA-GVDKVVPV 373

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
                 T ++  Y + G +  +E++F      +    +AMI+ Y  +   +  ++L + M
Sbjct: 374 -----MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 428

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCK 245
           +  G  P+  +  ++L  CSH    + G    +L+ K+    P  K  T +  L+    +
Sbjct: 429 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLG---R 485

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFV 303
            G L++A  L L +    D V W  ++S        + A R+  ++ +  + P DS ++V
Sbjct: 486 SGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE--LDPHDSASYV 543

Query: 304 AL 305
            L
Sbjct: 544 LL 545


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/529 (41%), Positives = 319/529 (60%), Gaps = 10/529 (1%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSA 106
           S ++  A  FF+ +P  D   W+ MIS + Q     +A +LF  M +      N+ ++++
Sbjct: 253 SGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFAS 312

Query: 107 MISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           ++        L+   ++     KV    +V    A++  Y K G+++ + KLF     KN
Sbjct: 313 VLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKN 372

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            V WN +I GYV+    E  L L   M+GL I+P   + SSVL   + L +L+ G+Q+H 
Sbjct: 373 EVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHS 432

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L  K+   KD+     LI MY KCG ++DA   F ++ ++D V+WNA+I GY+ HG G +
Sbjct: 433 LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGME 492

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL LFD M+    KP+ +TFV +L AC++AGL+D G  +F SM+ DYGI    +HYTCMV
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            LLGR+G+  EAV LI ++PF+P   ++  LL AC +HK LDL +  A  +  + P + A
Sbjct: 553 WLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDA 612

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
             +V L+N+YA  K+WD+VA +R +MK+  V K PG SW+E   VVH F  GD  HP + 
Sbjct: 613 T-HVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIK 671

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I   L+ L K+ + AGYVPD    L  V ++ KE+LL  HSE+LA+AFGLI++P G  I
Sbjct: 672 LIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSI 731

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+ KNLR+C DCH   K +S I +REI++RD  RFHHF+ G CSCGDYW
Sbjct: 732 RIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 10/320 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A   F  +P+ +T S+ T+  GF +     +AR L L +     E N   ++ ++   + 
Sbjct: 57  ASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVS 116

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               D  + +    +K+         TA+I  Y   G VD A ++FD +  K++V+W  M
Sbjct: 117 MDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGM 176

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           +A Y EN   ED L L   M  +G RPN  ++S+ L  C+ L + ++GK VH    K   
Sbjct: 177 VACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCY 236

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            +D      L+ +Y K G++ +A + F E+ + D++ W+ MIS YAQ  K ++AL LF +
Sbjct: 237 DRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCR 296

Query: 290 MKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           M+    + P++ TF ++L AC    L++LG Q   S V   G+ +       ++D+  + 
Sbjct: 297 MRQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKC 355

Query: 349 GKLVEAVDLIKKMPFKPQPA 368
           G++  +V L      K + A
Sbjct: 356 GEIENSVKLFTGSTEKNEVA 375



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 66/328 (20%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN------IMLSC---ILLNSDDVVA 57
           + W+ +++ +A Q  K K+A ELF ++ Q  VV  N      ++ +C   +LLN  + + 
Sbjct: 272 IPWSLMISRYA-QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIH 330

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           +      L      S N ++  + +   +  +  LF    EKN V+W+ +I GY++ G  
Sbjct: 331 SCVLKVGLDSNVFVS-NALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDG 389

Query: 118 DKAVELFK------VAPVK----------------------------------SVVAWTA 137
           +KA+ LF       + P +                                  SVVA  +
Sbjct: 390 EKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVA-NS 448

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G++D A   FD+M  ++ V+WNA+I GY  +    + L L  MM     +PN
Sbjct: 449 LIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPN 508

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLE 250
             +   VL  CS+   L  G+  H   FKS L      + P I  Y        + G  +
Sbjct: 509 KLTFVGVLSACSNAGLLDKGR-AH---FKSML--QDYGIEPCIEHYTCMVWLLGRSGQFD 562

Query: 251 DACKLFLEIQ-RKDVVTWNAMISGYAQH 277
           +A KL  EI  +  V+ W A++     H
Sbjct: 563 EAVKLIGEIPFQPSVMVWRALLGACVIH 590



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK +H  + K     D  A   L++ Y   G LEDA KLF E+   + V++  +  G+++
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
             + ++A RL  ++  EG + +   F  LL       L D  +     +   Y +  + D
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYV---YKLGHQAD 138

Query: 337 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD-LAEFAAMNL 393
            +  T ++D     G +  A  +   + FK   +  G +      +   D L  F  M +
Sbjct: 139 AFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRI 198

Query: 394 FNLNPAN 400
               P N
Sbjct: 199 MGYRPNN 205


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 341/617 (55%), Gaps = 53/617 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
           K +V +N+++ G+ K  G   ++  LF K+ Q      +   S +L     VV   DF  
Sbjct: 213 KDSVTFNTLITGYEKD-GLYTESIHLFLKMRQSGHQPSDFTFSGVL---KAVVGLHDFAL 268

Query: 62  ---FQRLPI-----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 L +     +D +  N ++  + +   + + R LF  MPE + VS++ +IS Y +
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 114 CGQLDKAVELFKVA----------PVKSVVAWTAMISG---------------------- 141
             Q + ++  F+            P  ++++  A +S                       
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHV 388

Query: 142 -------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
                  Y K    + AE +F  +P +  V+W A+I+GYV+      GLKL   M G  +
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNL 448

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           R + S+ ++VL   +  +SL LGKQ+H  + +S   ++  + + L+ MY KCG ++DA +
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQ 508

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E+  ++ V+WNA+IS +A +G GE A+  F KM + G++PDS++ + +L AC+H G 
Sbjct: 509 VFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G +YF +M   YGI  K  HY CM+DLLGR G+  EA  L+ +MPF+P   ++ ++L
Sbjct: 569 VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           +ACR+HK   LAE AA  LF++     A  YV ++NIYAA  +W+ V  ++ +M+E  + 
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K+P YSW+EV   +H F S D+ HP    I  K+ EL   ++  GY PD    +  V E+
Sbjct: 689 KVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQ 748

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           +K + L +HSE+LA+AF LI  P G PI V KNLR C DCH A K IS I KREI VRDT
Sbjct: 749 MKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDT 808

Query: 555 TRFHHFKDGTCSCGDYW 571
           +RFHHF +G CSCGDYW
Sbjct: 809 SRFHHFSEGVCSCGDYW 825



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 142/315 (45%), Gaps = 43/315 (13%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           LL    V AA   +  +P K+T S NTMISG V+  +++ ARDLF AMP++  V+W+ ++
Sbjct: 58  LLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILM 117

Query: 109 SGYIECGQLDKAVELFKVAPVKSV------VAWTAMISG--------------------- 141
             Y      D+A +LF+     S       V +T ++ G                     
Sbjct: 118 GWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLG 177

Query: 142 ----------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                           Y +  ++DLA  LF+E+P K+ VT+N +I GY ++    + + L
Sbjct: 178 FDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHL 237

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M   G +P+  + S VL     L    LG+Q+H L   +   +D +    ++  Y K
Sbjct: 238 FLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSK 297

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
              + +   LF E+   D V++N +IS Y+Q  + E +L  F +M+  G    +  F  +
Sbjct: 298 HDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATM 357

Query: 306 LLACNHAGLVDLGIQ 320
           L    +   + +G Q
Sbjct: 358 LSIAANLSSLQMGRQ 372



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 38/299 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT   N ++   +++  ++ AR ++  MP KN+VS + MISG+++ G +  A +LF   P
Sbjct: 47  DTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMP 106

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            ++VV WT ++  Y +    D A KLF +M   +  T                       
Sbjct: 107 DRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL---------------------- 144

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT----TALTPLISMYC 244
                  P+  + +++L GC+         QVH    K  L  DT    T    L+  YC
Sbjct: 145 -------PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVK--LGFDTNPFLTVSNVLLKSYC 195

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           +   L+ AC LF EI  KD VT+N +I+GY + G   +++ LF KM+  G +P   TF  
Sbjct: 196 EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255

Query: 305 LLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +L A    GL D  + Q   ++    G +        ++D   +  +++E   L  +MP
Sbjct: 256 VLKAV--VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 134/347 (38%), Gaps = 51/347 (14%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           ++V   + K+    DT     ++    + G +  A K++ E+  K+ V+ N MISG+ + 
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G    A  LFD M D  +    +T+  L+         D   + F  M         PDH
Sbjct: 93  GDVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL-PDH 147

Query: 338 YTCMVDLLGRAGKLVE-AVDLIK----KMPFKPQP--AIFGTLL-SACRVHKRLDLAEFA 389
            T    L G    + + AV  +     K+ F   P   +   LL S C V +RLDL    
Sbjct: 148 VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV-RRLDL---- 202

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG---YSWIEVGT 446
           A  LF   P   +  +  L   Y     + +   + L M+++     P    +S +    
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG--HQPSDFTFSGVLKAV 260

Query: 447 V-VHEFRSGDRVHP------------------ELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           V +H+F  G ++H                   +  S H+++  LE RM L   +P+L+F 
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV--LETRM-LFDEMPELDFV 317

Query: 488 LHAV------GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            + V        +  E  L F  E   + F     P  T + +  NL
Sbjct: 318 SYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/518 (41%), Positives = 314/518 (60%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLF------LAMPEKNSVSWSAMISGYIECG 115
           F+ +P  D   W+ MIS + Q     +A +LF        +P + + +        IE  
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 116 QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           QL K V   + KV    +V    A++  Y K G++D + KLF E+P +N VTWN MI GY
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V++   +  L L + M+   ++ +  + SSVL  C+ L++++LG Q+H L  K+   KD 
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI MY KCG +++A  +F  +  +D ++WNAMISGY+ HG   +AL+ F  M++ 
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
              P+ +TFV++L AC++AGL+D+G  YF SMV DYGI    +HYTCMV LLGR+G L +
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           AV LI+++P +P   ++  LL AC +H  +DL   +A  +  ++P + A  +V L+NIYA
Sbjct: 500 AVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEA-THVLLSNIYA 558

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
             ++W+ VA +R  MK   V K PG SWIE   +VH F  GD  HP++  I   L+ L  
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNM 618

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           + + AGYVPDL   L  V ++ K++ L  HSE+LA+AFGLI+ P    IR+ KNLR+C D
Sbjct: 619 KTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTD 678

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A K IS I +R+II+RD  RFHHF+DG CSCGDYW
Sbjct: 679 CHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 175/374 (46%), Gaps = 41/374 (10%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           V +A   F  +  KD  SW  M++ + +      +  LF  M       N  +++ ++  
Sbjct: 92  VNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKA 151

Query: 111 YI--ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
            I  E   + K+V   + K      +     ++  Y KFG  +   ++F+EMP  +++ W
Sbjct: 152 CIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPW 211

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           + MI+ Y +++ + + ++L   M    + PN  + +SVL  C+ + +LQLGKQVH  V K
Sbjct: 212 SFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLK 271

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L  +      L+ +Y KCG L+++ KLF+E+  ++ VTWN MI GY Q G G+KAL L
Sbjct: 272 VGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSL 331

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF---------------DSMVNDYGI 331
           +  M +  ++   +T+ ++L AC     ++LG Q                 +++++ Y  
Sbjct: 332 YKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAK 391

Query: 332 AAKPDHYTCMVDLL------------------GRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
                +   + D+L                  G  G+ ++A  ++++    P    F ++
Sbjct: 392 CGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSI 451

Query: 374 LSACRVHKRLDLAE 387
           LSAC     LD+ +
Sbjct: 452 LSACSNAGLLDIGQ 465



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 156/310 (50%), Gaps = 9/310 (2%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS--GYIECGQLD 118
           +P ++T S+ T+I G+VQ   + +  DLF  +     E N   ++ ++     +EC +L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 119 KAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
            ++   ++K+    +    TA+I  Y   G V+ A + FD +  K++V+W  M+A Y EN
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              +D L+L   M  +G  PN  + + VL  C  L +  +GK VH  V K+    D    
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+ +Y K GD  D  ++F E+ + DV+ W+ MIS YAQ  +  +A+ LF +M+   + 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           P+  TF ++L +C     + LG Q     V   G+         ++D+  + G+L  ++ 
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQ-VHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 357 LIKKMPFKPQ 366
           L  ++P + +
Sbjct: 300 LFMELPNRNE 309



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 10/157 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDF 61
           K  V  N+++  +AK  G +K+A+ +FD + + D +S+N M+S   ++    + + AF  
Sbjct: 377 KDVVVGNALIDMYAKC-GSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQM 435

Query: 62  FQRLP-IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECG 115
            Q    + +  ++ +++S       +   ++ F +M +   +      ++ M+      G
Sbjct: 436 MQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSG 495

Query: 116 QLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLA 151
            LDKAV+L +  P++ +V  W A++   +    VDL 
Sbjct: 496 HLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLG 532


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/555 (40%), Positives = 328/555 (59%), Gaps = 42/555 (7%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A+  F R   +D  S+  +I+G+  + ++  A+ LF  +P K+ VSW+AMISGY E G  
Sbjct: 118 AYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCY 177

Query: 118 DKAVELFK------VAPVKS--------------------VVAW-------------TAM 138
            +A+ELF+      V P +S                    V +W              A+
Sbjct: 178 KEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNAL 237

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I  Y K G+V+ A  LF  +  K++++WN +I GY   +  ++ L L + M+  G  PN 
Sbjct: 238 IDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 297

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            ++ SVL  C+HL ++ +G+ +H  + K    +   ++  T LI MY KCGD+E A ++F
Sbjct: 298 VTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVF 357

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  K + +WNAMI G+A HG+ + +  LF +M+  G++PD ITFV LL AC+H+G++D
Sbjct: 358 NSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLD 417

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           LG   F SM  DY +  K +HY CM+DLLG +G   EA ++I  M  +P   I+ +LL A
Sbjct: 418 LGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKA 477

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           C++H  ++LAE  A NL  + P N +  Y+ L+NIYA+  +W+DVARIR  +    + K+
Sbjct: 478 CKMHGNVELAESFAQNLIKIEPENPSS-YILLSNIYASAGRWEDVARIRALLNGKCMKKV 536

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S IEV +VV EF  GD+ HP+   I+  L+E+E  ++ AG+VPD    L  + EE K
Sbjct: 537 PGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWK 596

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK +S I KREI+ RD TR
Sbjct: 597 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTR 656

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF+DG CSC DYW
Sbjct: 657 FHHFRDGVCSCNDYW 671



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 201/401 (50%), Gaps = 41/401 (10%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-----------------AFDFFQRL 65
           L  A  +F+ I +P+ + +N M+    L+SD V +                  F F  + 
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 66  PIKD-TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
             K  T +    I G V K  +    DL++          +++IS Y++  +L+ A ++F
Sbjct: 74  CAKSKTFTEGQQIHGQVLK--LGFDLDLYVH---------TSLISMYVQNWRLEDAYKVF 122

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
             +  + VV++TA+I+GY   G +  A+KLFDE+P K++V+WNAMI+GY E    ++ L+
Sbjct: 123 DRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALE 182

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L   M+ + +RP+ S+  +VL  C+H  S++LG+QVH  V       +   +  LI +Y 
Sbjct: 183 LFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYS 242

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG++E AC LF  +  KDV++WN +I GY      ++AL LF +M   G  P+ +T ++
Sbjct: 243 KCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 302

Query: 305 LLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +L AC H G +D+G     Y D  +   G+       T ++D+  + G +  A  +   M
Sbjct: 303 VLPACAHLGAIDIGRWIHVYIDKRLK--GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360

Query: 362 PFKPQPA----IFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
             K   +    IFG  +   R     DL  F+ M    + P
Sbjct: 361 LHKSLSSWNAMIFGFAMHG-RADASFDL--FSRMRKIGIEP 398



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +   N + WN MI G+  +S     L L   M+ LG+ PN+ +   +
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70

Query: 205 LLGCSHLSSLQLGKQVHQL-------------------------------VFKSPLCKDT 233
           L  C+   +   G+Q+H                                 VF     +D 
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            + T LI+ Y   GD+  A KLF EI  KDVV+WNAMISGYA+ G  ++AL LF++M   
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++PD  T+V +L AC H+G ++LG Q   S V+D+G  +       ++DL  + G++  
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 354 AVDLIKKMPFK 364
           A  L + + +K
Sbjct: 250 ACGLFQGLSYK 260



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 168/396 (42%), Gaps = 84/396 (21%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCI---------- 48
           VK  V+WN++++G+A + G  K+A ELF+++     +PD  +Y  +LS            
Sbjct: 158 VKDVVSWNAMISGYA-ETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGR 216

Query: 49  ----------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                           ++N+         +V  A   FQ L  KD  SWNT+I G+    
Sbjct: 217 QVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMN 276

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
              +A  LF  M       N V+  +++      G +D  + + ++    +K V      
Sbjct: 277 LYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 336

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A ++F+ M  K+L +WNAMI G+  +  A+    L   M  +GI
Sbjct: 337 RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 396

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH   L LG+     +F+S + +D   +TP +  Y           
Sbjct: 397 EPDDITFVGLLSACSHSGMLDLGRH----IFRS-MTQD-YKMTPKLEHY----------- 439

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                          MI      G  ++A  + + M+   M+PD + + +LL AC   G 
Sbjct: 440 -------------GCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMHGN 483

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           V+L   +  +++        P  Y  + ++   AG+
Sbjct: 484 VELAESFAQNLIKIE--PENPSSYILLSNIYASAGR 517


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/520 (42%), Positives = 307/520 (59%), Gaps = 9/520 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--ECG 115
           A   F R+P ++  +W T+++         +    FL    ++ V+ +A     +   CG
Sbjct: 134 ALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACG 193

Query: 116 QLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
                  L     KV     V   +++I  YMK G +D   ++FDEM T++LV WN++IA
Sbjct: 194 TPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIA 253

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           G+ ++      ++L   M   G   N  +L+SVL  C+ +  L+ G+QVH  V K    +
Sbjct: 254 GFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE--R 311

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+ MYCKCG LEDA  LF  + ++DV++W+ MISG AQ+GK  +ALR+FD MK
Sbjct: 312 DLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMK 371

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG+ P+ IT V +L AC+HAGLV+ G  YF SM   +GI  + +H+ CMVDLLGRAGKL
Sbjct: 372 SEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKL 431

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EAV+ I+ M  +P   I+ TLL ACR+HK  +LA +AA  +  L P +  G  V L+N 
Sbjct: 432 DEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEP-DDQGARVLLSNT 490

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA +++W D  +   +M++  + K PG SWIE+   VH F +GD  HP   +I ++L  L
Sbjct: 491 YADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRL 550

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R+   GYVP  EF L  +  E KE LL +HSEK+AIAFG +    G PIR+ KNLR+C
Sbjct: 551 IGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRIC 610

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K +S  E R II+RD  RFHHF+DG CSCGDYW
Sbjct: 611 GDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE-NSWAEDGLKLLRMMIGLGI 194
            +++S Y KFG +D A +LFD MP +N+VTW  ++A     +   E+ L+ L  M   G+
Sbjct: 119 NSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGV 178

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PNA + SSVL  C     L     +H    K  L  D    + LI  Y K GDL+   +
Sbjct: 179 APNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRR 235

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E+  +D+V WN++I+G+AQ G G  A+ LF +MKD G   +  T  ++L AC    +
Sbjct: 236 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVM 295

Query: 315 VDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++ G Q     V+ + +  + D   +  ++D+  + G L +A  L  +MP
Sbjct: 296 LEAGRQ-----VHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFHRMP 340



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 52/277 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD---TASWNTMI 77
           G L   + +FD++   D+V +N +++     S D V A + F R+  KD   +A+  T+ 
Sbjct: 228 GDLDGGRRVFDEMVTRDLVVWNSIIAG-FAQSGDGVGAIELFMRM--KDAGFSANQGTLT 284

Query: 78  S------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           S      G V  +   +     L   E++ +  +A++  Y +CG L+ A  LF   P + 
Sbjct: 285 SVLRACTGMVMLEAGRQVHAHVLKY-ERDLILHNALLDMYCKCGSLEDAEALFHRMPQRD 343

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V++W+ MISG  + GK   A ++FD M ++                              
Sbjct: 344 VISWSTMISGLAQNGKSAEALRVFDLMKSE------------------------------ 373

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            G+ PN  ++  VL  CSH   ++ G    + + +L    P  +    +  L+    + G
Sbjct: 374 -GVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLG---RAG 429

Query: 248 DLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 283
            L++A +   ++    D V W  ++     H  G  A
Sbjct: 430 KLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV---- 56
           M  +  V WNS++AGFA Q G    A ELF ++      +    L+ +L     +V    
Sbjct: 240 MVTRDLVVWNSIIAGFA-QSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEA 298

Query: 57  -----AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                A    ++R    D    N ++  + +  ++  A  LF  MP+++ +SWS MISG 
Sbjct: 299 GRQVHAHVLKYER----DLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGL 354

Query: 112 IECGQLDKAVELFKVAPVKSV 132
            + G+  +A+ +F +   + V
Sbjct: 355 AQNGKSAEALRVFDLMKSEGV 375


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/524 (41%), Positives = 317/524 (60%), Gaps = 12/524 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYI 112
           A + F  LP KD  SWN++ISGF ++ ++     L   M      + N V+   ++S   
Sbjct: 92  ALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACA 151

Query: 113 ECGQLDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
             G+LD    +  +A VKS     V    ++I+ Y K G ++ A  LF+ M  ++LV+WN
Sbjct: 152 GVGELDVGKCIHGIA-VKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWN 210

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +M+A +V    AE G+    MM   GI  + +++ S+LL C +L   +L + VH  +   
Sbjct: 211 SMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNG 270

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  +    T L+ +Y K G L D+CK+F  +   D V W AM+S YA HG+G +A+  F
Sbjct: 271 GLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHF 330

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           + M  EG+ PD +TF  LL AC+H+GLV+ G  YF  M   YG+  + +HY+CMVDLLGR
Sbjct: 331 ELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGR 390

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           +G L +A  LIK MP +P   ++G L+ ACRV   ++L +  A  LF+L+P+++   Y+ 
Sbjct: 391 SGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRN-YIT 449

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+N+Y+A  +W D +++R  MKE  +++ PG S+IE G  +H F  GD+ HP+   I+ K
Sbjct: 450 LSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNK 509

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           L+EL ++ +  G+    E+ LH V EEVKE L+  HSEKLAIAFGL+    G P+ + KN
Sbjct: 510 LEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKN 569

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +R+CGDCH   K IS IEKR II+RDT RFHHF +G CSCGDYW
Sbjct: 570 IRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRP 196
           ++S Y++ G    A +LFDE+P K+LV+WN++I+G+   +     L LL RM   +G++P
Sbjct: 79  LVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKP 138

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  ++  V+  C+ +  L +GK +H +  KS +  +   +  LI++Y KCG LE AC LF
Sbjct: 139 NEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLF 198

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  + +V+WN+M++ +   G  EK +  F  M+  G+  D  T V+LLLAC + G+  
Sbjct: 199 EGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRK 258

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           L       ++N  G+       T ++DL  + G L ++  +   M   P    +  +LS+
Sbjct: 259 LAEAVHGYILNG-GLDGNLAIATALLDLYAKLGTLSDSCKVFGGM-INPDAVAWTAMLSS 316

Query: 377 CRVHKR 382
             +H R
Sbjct: 317 YAMHGR 322



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 196 PNASSLSSVLL-GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            N  SL S L+   S  SS+   + +H  V KS           L+S Y + G  +DA +
Sbjct: 35  SNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALE 94

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAG 313
           LF E+  KD+V+WN++ISG+++       L L  +M+ E G+KP+ +T + ++ AC   G
Sbjct: 95  LFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVG 154

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            +D+G +    +    G+  +      +++L G+ G L  A  L + M  +       + 
Sbjct: 155 ELDVG-KCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQS----LVSW 209

Query: 374 LSACRVHKRLDLAE 387
            S   VH  + LAE
Sbjct: 210 NSMVAVHVHMGLAE 223



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 38/257 (14%)

Query: 57  AAFDFFQRLPIKDTASWNTMIS-----GFVQK--------------KNMAKARDLFLAMP 97
           AA   F+ + ++   SWN+M++     G  +K               + A    L LA  
Sbjct: 193 AACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACE 252

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
                  +  + GYI  G LD  + +            TA++  Y K G +  + K+F  
Sbjct: 253 NLGVRKLAEAVHGYILNGGLDGNLAI-----------ATALLDLYAKLGTLSDSCKVFGG 301

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M   + V W AM++ Y  +    + ++   +M+  G+ P+  + + +L  CSH   ++ G
Sbjct: 302 MINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEG 361

Query: 218 KQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMIS--- 272
           K   +++++    +      + ++ +  + G L DA KL   +    +   W A+I    
Sbjct: 362 KNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACR 421

Query: 273 --GYAQHGKGEKALRLF 287
             G  + GK E A RLF
Sbjct: 422 VRGNIELGK-EVAERLF 437



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 131/297 (44%), Gaps = 27/297 (9%)

Query: 1   MNVKTTVNWNSVLA-----GFA-KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD 54
           M+V++ V+WNS++A     G A K  G     +       Q  VVS  ++L+C  L    
Sbjct: 201 MSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVS--LLLACENLGVRK 258

Query: 55  VVAAFDFFQRLPIKDT--ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           +  A   +      D   A    ++  + +   ++ +  +F  M   ++V+W+AM+S Y 
Sbjct: 259 LAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYA 318

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT--- 165
             G+  +A+E F++   + V    V +T ++S     G V+  +  F  M     V    
Sbjct: 319 MHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRV 378

Query: 166 --WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
             ++ M+     +    D  KL++ M    + PN+    +++  C    +++LGK+V + 
Sbjct: 379 EHYSCMVDLLGRSGHLNDAYKLIKSM---PMEPNSGVWGALIGACRVRGNIELGKEVAER 435

Query: 224 VFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +F   P   D+     L +MY   G   DA K+   + ++ V+  N   S Y +HG 
Sbjct: 436 LFSLDP--SDSRNYITLSNMYSAAGQWRDASKV-RALMKERVLIRNPGCS-YIEHGN 488


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 342/609 (56%), Gaps = 43/609 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+WNS++ G     G +  A++LFD++P+  VVS+  ++  +L       A   F+ 
Sbjct: 115 KDVVSWNSIIKG-CLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWA 173

Query: 64  RLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             P+ +D A+WN MI G+     +  A  LF  MP ++ +SWS+MI+G    G+ ++A+ 
Sbjct: 174 MEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALV 233

Query: 123 LFK-----------------VAPVKSVVAW-----------------------TAMISGY 142
           LF+                 ++    + AW                        ++++ Y
Sbjct: 234 LFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFY 293

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
               +++ A ++F E+  K++V W A++ GY  N    + L++   M+ + + PN SS +
Sbjct: 294 AGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFT 353

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S L  C  L  ++ GK +H    K  L         L+ MY KCG + DA  +F  I  K
Sbjct: 354 SALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEK 413

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +VV+WN++I G AQHG G  AL LF++M  EG+ PD IT   LL AC+H+G++     +F
Sbjct: 414 NVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFF 473

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
                   +    +HYT MVD+LGR G+L EA  ++  MP K    ++  LLSACR H  
Sbjct: 474 RYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSN 533

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           LDLA+ AA  +F + P + +  YV L+N+YA+  +W +VA IR  MK N VVK PG SW+
Sbjct: 534 LDLAKRAANQIFEIEP-DCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWL 592

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
            +    H+F S DR HP    I++KL+ L  ++K  GYVPD +FALH V  E KE++L +
Sbjct: 593 TLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSY 652

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSE+LAIAFGL+    G+ I V KNLRVCGDCH A K ++ I  REI+VRD++RFH FK+
Sbjct: 653 HSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKN 712

Query: 563 GTCSCGDYW 571
           G CSCGDYW
Sbjct: 713 GICSCGDYW 721



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 167/298 (56%), Gaps = 6/298 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L +A+ +FD+IP P V  Y IML     N   +  A D F+R+P KD  SWN++I G + 
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQN-HRLREAIDLFRRIPFKDVVSWNSIIKGCLH 129

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPV-KSVVAWTAMIS 140
             ++  AR LF  MP +  VSW+ ++ G +  G + +A  LF  + P+ + V AW AMI 
Sbjct: 130 CGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIH 189

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           GY   G+VD A +LF +MP++++++W++MIAG   N  +E  L L R M+  G+  ++  
Sbjct: 190 GYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGV 249

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           L   L   + + + ++G Q+H  VFK      D      L++ Y  C  +E AC++F E+
Sbjct: 250 LVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEV 309

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
             K VV W A+++GY  + K  +AL +F +M    + P+  +F + L +C   GL D+
Sbjct: 310 VYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSC--CGLEDI 365


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 320/557 (57%), Gaps = 40/557 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ AA + F+R+P ++  SWN +  G+++  ++  AR LF  MPE+N  +W+AM++G   
Sbjct: 91  DLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTN 150

Query: 114 CGQLDKAVELF--------------------------KVAPVKSVVAW------------ 135
            G  ++++  F                           V   + V A+            
Sbjct: 151 LGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCV 210

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ G +   E +   +P+ ++V+ N +IAG  +N  +E  L+   MM  +G+
Sbjct: 211 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 270

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             +  +  S +  CS L++L  G+Q+H  V K+ + K    +T L+ MY +CG L D+ +
Sbjct: 271 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F      D    +AMIS Y  HG G+KA+ LF +M + G +P  +TF+ALL AC+H+GL
Sbjct: 331 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGL 390

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            + G+  F+ M   YG+     HYTC+VDLLGR+G L EA  LI  MP  P   I+ TLL
Sbjct: 391 KEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLL 450

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SAC+  K  D+AE  A  +  L+P ++A  YV L+NI A  ++W DV+ +R +M++NNV 
Sbjct: 451 SACKTQKNFDMAERIAKRVIELDPHDSAS-YVLLSNIRATSRRWGDVSEVRKAMRDNNVR 509

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SW+E+   +H+F +GD  HP    I E L+E+  +++  GY PD+   LH + +E
Sbjct: 510 KEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE 569

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  REI+VRD 
Sbjct: 570 EKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDV 629

Query: 555 TRFHHFKDGTCSCGDYW 571
           +RFHHFKDG CSC DYW
Sbjct: 630 SRFHHFKDGRCSCRDYW 646



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 1/241 (0%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G L  A ELF+  P ++V++W  +  GY+K G +  A KLFDEMP +N+ TWNAM+
Sbjct: 86  YADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMV 145

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           AG     + E+ L     M   G+ P+   L SV   C+ L  +  G+QVH  V +S L 
Sbjct: 146 AGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLD 205

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    + L  MY +CG L++   +   +    +V+ N +I+G  Q+G  E AL  F  M
Sbjct: 206 RDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMM 265

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           +  G+  D +TFV+ + +C+    +  G Q     V   G+       TC+V +  R G 
Sbjct: 266 RSVGVAADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 324

Query: 351 L 351
           L
Sbjct: 325 L 325



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 43/200 (21%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A   S +   C  L  L   +Q+H     S    D      L+  Y   GDL  A +LF 
Sbjct: 44  ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 100

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDK---------------------------- 289
            I R++V++WN +  GY ++G    A +LFD+                            
Sbjct: 101 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 160

Query: 290 ---MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
              M+ EGM PD     ++   C  AGL D+        V+ Y + +  D   C+   L 
Sbjct: 161 FLDMRREGMHPDEFGLGSVFRCC--AGLRDV---VTGRQVHAYVVRSGLDRDMCVGSSLA 215

Query: 347 ----RAGKLVEAVDLIKKMP 362
               R G L E   +++ +P
Sbjct: 216 HMYMRCGCLQEGEAVLRMLP 235



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 123/302 (40%), Gaps = 35/302 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S LA    + G L++ + +   +P   +VS N +++    N D   A   F     +  
Sbjct: 211 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 270

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            A   T +S      ++A       A+ +   +    M +G            + KV PV
Sbjct: 271 AADVVTFVSAISSCSDLA-------ALAQGQQIHGQVMKAG------------VDKVVPV 311

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
                 T ++  Y + G +  +E++F      +    +AMI+ Y  +   +  ++L + M
Sbjct: 312 -----MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 366

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCK 245
           +  G  P+  +  ++L  CSH    + G    +L+ K+    P  K  T +  L+    +
Sbjct: 367 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLG---R 423

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFV 303
            G L++A  L L +    D V W  ++S        + A R+  ++ +  + P DS ++V
Sbjct: 424 SGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE--LDPHDSASYV 481

Query: 304 AL 305
            L
Sbjct: 482 LL 483


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 321/558 (57%), Gaps = 41/558 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D  +A   + R+  K+  S N +I+G+V+  ++  AR +F  MP++   +W+AMI+G I+
Sbjct: 94  DFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ 153

Query: 114 CGQLDKAVELFK--------------------VAPVKSV-------------------VA 134
               ++ + LF+                     A ++SV                   V 
Sbjct: 154 FEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVV 213

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ GK+   E +   MP +NLV WN +I G  +N   E  L L +MM   G 
Sbjct: 214 NSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGC 273

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG L DA K
Sbjct: 274 RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK 333

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAG 313
            F E + +D V W++MIS Y  HG+G++A+ LF+ M ++  M+ + + F+ LL AC+H+G
Sbjct: 334 AFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSG 393

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +I+ MP K    I+ TL
Sbjct: 394 LKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTL 453

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R SM++ NV
Sbjct: 454 LSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASAKRWRDVSEVRKSMRDKNV 512

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD    LH + E
Sbjct: 513 KKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDE 572

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I+ REI +RD
Sbjct: 573 EEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRD 632

Query: 554 TTRFHHFKDGTCSCGDYW 571
            +RFHHF +G CSCGDYW
Sbjct: 633 GSRFHHFINGKCSCGDYW 650



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           L I  N S  +  +  C+   SL  GKQ+H L+  S    D      L+SMY K GD   
Sbjct: 38  LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  ++  +++K+ ++ N +I+GY + G    A ++FD+M D  +     T+ A++     
Sbjct: 98  AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL----TTWNAMIAGLIQ 153

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
               + G+  F  M   +G+   PD YT      G AG
Sbjct: 154 FEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 188



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 52/317 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS LA    + GKL+D +                    I++ S            +P+++
Sbjct: 214 NSSLAHMYMRNGKLQDGE--------------------IVIRS------------MPVRN 241

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC---GQLDKA-V 121
             +WNT+I G  Q         L+  M       N +++  ++S   +    GQ  +   
Sbjct: 242 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 301

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E  K+     V   +++IS Y K G +  A K F E   ++ V W++MI+ Y  +   ++
Sbjct: 302 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 361

Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTAL 236
            ++L   M     +  N  +  ++L  CSH      G ++  ++ +     P  K  T +
Sbjct: 362 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 421

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+     C D  +A    + I + D+V W  ++S    H   E A R+F ++    + 
Sbjct: 422 VDLLGR-AGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--ID 477

Query: 297 P-DSITFVALLLACNHA 312
           P DS  +V  LLA  HA
Sbjct: 478 PNDSACYV--LLANVHA 492


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 321/558 (57%), Gaps = 41/558 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D  +A   + R+  K+  S N +I+G+V+  ++  AR +F  MP++   +W+AMI+G I+
Sbjct: 7   DFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ 66

Query: 114 CGQLDKAVELFK--------------------VAPVKSV-------------------VA 134
               ++ + LF+                     A ++SV                   V 
Sbjct: 67  FEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVV 126

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ GK+   E +   MP +NLV WN +I G  +N   E  L L +MM   G 
Sbjct: 127 NSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGC 186

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG L DA K
Sbjct: 187 RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK 246

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAG 313
            F E + +D V W++MIS Y  HG+G++A+ LF+ M ++  M+ + + F+ LL AC+H+G
Sbjct: 247 AFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSG 306

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +I+ MP K    I+ TL
Sbjct: 307 LKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTL 366

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R SM++ NV
Sbjct: 367 LSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASAKRWRDVSEVRKSMRDKNV 425

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD    LH + E
Sbjct: 426 KKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDE 485

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I+ REI +RD
Sbjct: 486 EEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRD 545

Query: 554 TTRFHHFKDGTCSCGDYW 571
            +RFHHF +G CSCGDYW
Sbjct: 546 GSRFHHFINGKCSCGDYW 563



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 148/285 (51%), Gaps = 6/285 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G    AV ++     K+ ++   +I+GY++ G +  A K+FDEMP + L TWNAMI
Sbjct: 2   YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 61

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           AG ++  + E+GL L R M GLG  P+  +L SV  G + L S+ +G+Q+H    K  L 
Sbjct: 62  AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 121

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            D    + L  MY + G L+D   +   +  +++V WN +I G AQ+G  E  L L+  M
Sbjct: 122 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMM 181

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           K  G +P+ ITFV +L +C+   +   G Q     +   G ++     + ++ +  + G 
Sbjct: 182 KISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYSKCGC 240

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           L +A     +   + +  ++ +++SA   H + D     A+ LFN
Sbjct: 241 LGDAAKAFSEREDEDE-VMWSSMISAYGFHGQGD----EAIELFN 280



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 52/317 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS LA    + GKL+D +                    I++ S            +P+++
Sbjct: 127 NSSLAHMYMRNGKLQDGE--------------------IVIRS------------MPVRN 154

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC---GQLDKA-V 121
             +WNT+I G  Q         L+  M       N +++  ++S   +    GQ  +   
Sbjct: 155 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 214

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E  K+     V   +++IS Y K G +  A K F E   ++ V W++MI+ Y  +   ++
Sbjct: 215 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 274

Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTAL 236
            ++L   M     +  N  +  ++L  CSH      G ++  ++ +     P  K  T +
Sbjct: 275 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 334

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+     C D  +A    + I + D+V W  ++S    H   E A R+F ++    + 
Sbjct: 335 VDLLGR-AGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--ID 390

Query: 297 P-DSITFVALLLACNHA 312
           P DS  +V  LLA  HA
Sbjct: 391 PNDSACYV--LLANVHA 405



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K GD   A  ++  +++K+ ++ N +I+GY + G    A ++FD+M D  +     T
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL----TT 56

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           + A++         + G+  F  M   +G+   PD YT      G AG
Sbjct: 57  WNAMIAGLIQFEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 101


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/483 (43%), Positives = 300/483 (62%), Gaps = 1/483 (0%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
           ARD F   P ++    + M++ Y+   ++ +A ++F   P++ +V+W  MI GY   G+V
Sbjct: 11  ARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEV 70

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            LA ++FD    ++  +W++MI+ Y ++  +++ L+L R M    I P+  +L SV+  C
Sbjct: 71  GLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSAC 130

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           S L +L +G +VH+ V  + +  D    T LI MY KCGD+E A ++F  +  KDV TW+
Sbjct: 131 SDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWS 190

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           +MI G A HG G ++L LF KM  EGMKP+ +TFV +L+AC H GLV  G +YF SM   
Sbjct: 191 SMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEV 250

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           +GI    +HY CMVDLLGR+G + EA  LI+ M F+P   I+  LL ACR+HK +++AE 
Sbjct: 251 HGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEE 310

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           A   L  L+P    G YV L+NIYA    W+ VA +R +++ +N+ ++PG S IE    +
Sbjct: 311 AMAKLRVLDPL-GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKI 369

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEF SGDR+HP    I+  L+E+  R+K AGY P     L  + E+ KE+ L  HSEKLA
Sbjct: 370 HEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLA 429

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           IAF L+  P  + IR+ KNLR C DCH A K IS +  R++IVRD  RFHHF +G CSC 
Sbjct: 430 IAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCK 489

Query: 569 DYW 571
           DYW
Sbjct: 490 DYW 492



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 60/325 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A++ FD+ P  DV   N+ML+  +  S+ V  A   F  +P++D  SWNTMI G+
Sbjct: 6   GRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSE-VAEARKVFDGMPMRDLVSWNTMIHGY 64

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA------ 134
             +  +  AR++F    ++++ SWS+MIS Y +  +  +A+EL++     S++       
Sbjct: 65  AMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLV 124

Query: 135 ---------------------------------WTAMISGYMKFGKVDLAEKLFDEMPTK 161
                                             TA+I  Y K G ++ A+++FD MP K
Sbjct: 125 SVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEK 184

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++ TW++MI G   +    + L L   MI  G++PN  +   VL+ C+H+  +  GK+  
Sbjct: 185 DVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKK-- 242

Query: 222 QLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLFLEIQ-RKDVVTWNAMISG 273
              F+S    +   + P +  Y C      + G +E+A +L   +    D + W A++  
Sbjct: 243 --YFRS--MNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGA 298

Query: 274 YAQHGKGEKA------LRLFDKMKD 292
              H   E A      LR+ D + D
Sbjct: 299 CRIHKNVEIAEEAMAKLRVLDPLGD 323



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 145/365 (39%), Gaps = 78/365 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-------------- 46
           M ++  V+WN+++ G+A  RG++  A+E+FD     D  S++ M+S              
Sbjct: 49  MPMRDLVSWNTMIHGYA-MRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALEL 107

Query: 47  ------------CILLNSDDVVAAFDFFQRLPIK--------------DTASWNTMISGF 80
                       CI L S  VV+A      L +               D      +I  +
Sbjct: 108 WREMHAASIIPDCITLVS--VVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMY 165

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWT 136
            +  ++  A+ +F  MPEK+  +WS+MI G    G   +++ LF     + +    V + 
Sbjct: 166 AKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFV 225

Query: 137 AMISGYMKFGKVDLAEKLFDEM-------PTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            ++      G V   +K F  M       PT  +  +  M+     +   E+  +L+R M
Sbjct: 226 GVLIACTHVGLVSEGKKYFRSMNEVHGIEPT--VEHYGCMVDLLGRSGHVEEARQLIRSM 283

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGD 248
                 P+     ++L  C    ++++ ++ + +L    PL      L  L ++Y +   
Sbjct: 284 T---FEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVL--LSNIYAQANS 338

Query: 249 LEDACKLFLEIQRKDV--------VTWNAMI----SGYAQHGKGEKALR----LFDKMKD 292
            E   ++   I+R ++        + W+  I    SG   H + ++  R    + D++K 
Sbjct: 339 WEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQ 398

Query: 293 EGMKP 297
            G KP
Sbjct: 399 AGYKP 403


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 321/558 (57%), Gaps = 41/558 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D  +A   + R+  K+  S N +I+G+V+  ++  AR +F  MP++   +W+AMI+G I+
Sbjct: 9   DFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ 68

Query: 114 CGQLDKAVELFK--------------------VAPVKSV-------------------VA 134
               ++ + LF+                     A ++SV                   V 
Sbjct: 69  FEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVV 128

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ GK+   E +   MP +NLV WN +I G  +N   E  L L +MM   G 
Sbjct: 129 NSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGC 188

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG L DA K
Sbjct: 189 RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK 248

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAG 313
            F E + +D V W++MIS Y  HG+G++A+ LF+ M ++  M+ + + F+ LL AC+H+G
Sbjct: 249 AFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSG 308

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +I+ MP K    I+ TL
Sbjct: 309 LKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTL 368

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R SM++ NV
Sbjct: 369 LSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASAKRWRDVSEVRKSMRDKNV 427

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD    LH + E
Sbjct: 428 KKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDE 487

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I+ REI +RD
Sbjct: 488 EEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRD 547

Query: 554 TTRFHHFKDGTCSCGDYW 571
            +RFHHF +G CSCGDYW
Sbjct: 548 GSRFHHFINGKCSCGDYW 565



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 150/288 (52%), Gaps = 6/288 (2%)

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           +S Y + G    AV ++     K+ ++   +I+GY++ G +  A K+FDEMP + L TWN
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AMIAG ++  + E+GL L R M GLG  P+  +L SV  G + L S+ +G+Q+H    K 
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKY 120

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  D    + L  MY + G L+D   +   +  +++V WN +I G AQ+G  E  L L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
             MK  G +P+ ITFV +L +C+   +   G Q     +   G ++     + ++ +  +
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYSK 239

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            G L +A     +   + +  ++ +++SA   H + D     A+ LFN
Sbjct: 240 CGCLGDAAKAFSEREDEDE-VMWSSMISAYGFHGQGD----EAIELFN 282



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 52/317 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS LA    + GKL+D +                    I++ S            +P+++
Sbjct: 129 NSSLAHMYMRNGKLQDGE--------------------IVIRS------------MPVRN 156

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC---GQLDKA-V 121
             +WNT+I G  Q         L+  M       N +++  ++S   +    GQ  +   
Sbjct: 157 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 216

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E  K+     V   +++IS Y K G +  A K F E   ++ V W++MI+ Y  +   ++
Sbjct: 217 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 276

Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTAL 236
            ++L   M     +  N  +  ++L  CSH      G ++  ++ +     P  K  T +
Sbjct: 277 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 336

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+     C D  +A    + I + D+V W  ++S    H   E A R+F ++    + 
Sbjct: 337 VDLLGR-AGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--ID 392

Query: 297 P-DSITFVALLLACNHA 312
           P DS  +V  LLA  HA
Sbjct: 393 PNDSACYV--LLANVHA 407


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/504 (43%), Positives = 310/504 (61%), Gaps = 7/504 (1%)

Query: 74   NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VA 127
            N +IS + +   + +A  +   MP ++ VSW+++++G    GQ D A+E+ K      + 
Sbjct: 1165 NGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLK 1224

Query: 128  PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            P    +A             V   +++F ++  K+LV+WN MIA Y+ NS   + + +  
Sbjct: 1225 PDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFL 1284

Query: 188  MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
             M    + P+A S++SVL  C  LS+L LG+++H+ V +  L  +      LI MY KCG
Sbjct: 1285 QMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCG 1344

Query: 248  DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
             LE A ++F +++ +DVV+W +MIS Y  +GKG  A+ LF +M+D G+ PDSI FV++L 
Sbjct: 1345 CLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLS 1404

Query: 308  ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
            AC+HAGL+D G  YF  M  +  I  + +H+ CMVDLLGRAG++ EA   IK+MP +P  
Sbjct: 1405 ACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNE 1464

Query: 368  AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
             ++G LLSACRV+  + +   AA  LF L P   +G YV L+NIYA   +W+DV  +R  
Sbjct: 1465 RVWGALLSACRVYSNMIIGLLAADQLFQLCPEQ-SGYYVLLSNIYAKAGRWEDVTTVRSI 1523

Query: 428  MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
            MK   + KMPG S  E+   VH F +GD+ HP+   I+E+L  L  +MK AGYVP+ + A
Sbjct: 1524 MKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSA 1583

Query: 488  LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
            LH V EE KE  L  HSEKLAIAF ++    G+PIR+ KNLRVCGDCH A K IS I  R
Sbjct: 1584 LHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGR 1643

Query: 548  EIIVRDTTRFHHFKDGTCSCGDYW 571
            EI +RDT RFHHF +G CSCGDYW
Sbjct: 1644 EITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 138  MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            ++  Y   G+      +FDE+P KN+V +N MI  YV N    D L + + M G GI P+
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 198  ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              +   VL   S    L +G Q+H  V +  L  +      LISMY KCG L +AC++  
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 258  EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            Z+  +DVV+WN++++G A++G+ + AL +  +M+  G+KPD+ T  +LL A  +  L ++
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 318  GI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGT 372
                + F  + N   ++     +  M+ +        EAVD+  +M      P      +
Sbjct: 1246 SFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300

Query: 373  LLSAC 377
            +L AC
Sbjct: 1301 VLPAC 1305



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 63/386 (16%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS-DDV 55
            M  +  V+WNS++AG A+  G+  DA E+  ++     +PD  +   +L  +     D+V
Sbjct: 1187 MPCRDVVSWNSLVAGCARN-GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--E 113
                + F +L  K   SWN MI+ ++     A+A D+FL M E ++V   A+    +   
Sbjct: 1246 SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQM-EDHAVDPDAISIASVLPA 1304

Query: 114  CGQLD---------KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
            CG L          + V   ++ P  +++   A+I  Y K G ++ A ++FD+M  +++V
Sbjct: 1305 CGDLSALLLGRRIHEYVVRKRLQP--NLLLENALIDMYAKCGCLEYAREVFDQMKFRDVV 1362

Query: 165  TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            +W +MI+ Y  N    D + L   M  LG+ P++ +  SVL  CSH   L  G+   +L 
Sbjct: 1363 SWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKL- 1421

Query: 225  FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                                    + + CK+   I+      +  M+    + G+ ++A 
Sbjct: 1422 ------------------------MTEECKIVPRIEH-----FVCMVDLLGRAGQVDEAY 1452

Query: 285  RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
                +M    M+P+   + ALL AC     + +G+   D +        +  +Y  + ++
Sbjct: 1453 GFIKQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLSNI 1507

Query: 345  LGRAGKLVEAVDL--------IKKMP 362
              +AG+  +   +        IKKMP
Sbjct: 1508 YAKAGRWEDVTTVRSIMKTKGIKKMP 1533


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/444 (47%), Positives = 281/444 (63%), Gaps = 1/444 (0%)

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P KS+V+ TAMI+ Y K+G +D A  LFD +  ++ + WN MI GY ++    +GL L R
Sbjct: 2   PEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFR 61

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+   +RPN  ++ +VL  C    +L+ G+ VH  +  + +  +    T LI MY KCG
Sbjct: 62  QMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCG 121

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            LEDA  +F  I  KDVV WN+M+ GYA HG  + ALRLF +M   G +P  ITF+ +L 
Sbjct: 122 SLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLN 181

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGLV  G ++F SM ++YGI  K +HY CMV+LLGRAG L EA +L+K M     P
Sbjct: 182 ACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDP 241

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++GTLL ACR+H  + L E  A  L + N AN +G YV L+NIYAA   W+ VAR+R  
Sbjct: 242 VLWGTLLGACRLHGNIALGEQIAEYLVSQNLAN-SGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MKE+   K PG S IEV   VHEF +GD  HP+   I+E L+E+   +K  GY P  +  
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH + +  KE+ L  HSEKLA+AFGLI    GT I++ KNLRVC DCH  TK IS I  R
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           ++++RD  RFHHF +G CSCGDYW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/371 (54%), Positives = 259/371 (69%), Gaps = 1/371 (0%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           ++ +L  C+ +++L+ GKQVH  + K     D +    L+ MY KCG +EDA ++F ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             DV +WNAMISG AQHG G++A+ LF++M   G+KP+ ITFV +L  C+HAGLVD G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           YFDSM  D+GI+ K +HY+CMVDL GRAG L EA++ I +MP +P  +++G+LL ACRVH
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
             ++LAE A   L  L P N  G YV L+NIYAA  +WDD  ++R  MK+ +V K PG S
Sbjct: 181 GNIELAERAVEQLIELTPENP-GTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCS 239

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           WIEV   VH F  GD  HP++  I+E L+ L  +MK AGY+P+  F LH V EE KE +L
Sbjct: 240 WIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWIL 299

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLAIAFG+I  P GT IRV KNLRVCGDCH ATK+IS I  REI++RDT RFHHF
Sbjct: 300 GHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHF 359

Query: 561 KDGTCSCGDYW 571
           KDG CSCGDYW
Sbjct: 360 KDGQCSCGDYW 370



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ K+     V     ++  Y K G+++ A+++F ++   ++ +WNAMI+G  ++   ++
Sbjct: 23  DIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKE 82

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLI 240
            + L   M+  G++PN  +   VL GCSH   +  G+     +     +       + ++
Sbjct: 83  AVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMV 142

Query: 241 SMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++ + G L++A     ++    +   W +++     HG  E A R  +++
Sbjct: 143 DLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQL 193



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTMI 77
           G+++DAQE+F K+ +PDV S+N M+S +  +     A   F Q L      +  ++  ++
Sbjct: 47  GRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVL 106

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVK-S 131
           SG      + + R+ F +M   + +S     +S M+  +   G LD+A+      PV+ +
Sbjct: 107 SGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPN 166

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
              W +++      G ++LAE+  +   E+  +N  T+  +   Y      +D  K+ +M
Sbjct: 167 ASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKM 226

Query: 189 M 189
           M
Sbjct: 227 M 227



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 19/199 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D +  N ++  + +   +  A+++F  + E +  SW+AMISG  + G   +AV LF+   
Sbjct: 32  DVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQML 91

Query: 126 ---VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT-----WNAMIAGYVENS 177
              V P +  + +  ++SG    G VD     FD M   + ++     ++ M+  +    
Sbjct: 92  QTGVKPNQ--ITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAG 149

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTAL 236
             ++ L  +  M    + PNAS   S+L  C    +++L ++ V QL+  +P    T  L
Sbjct: 150 CLDEALNFINQM---PVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVL 206

Query: 237 TPLISMYCKCGDLEDACKL 255
             L ++Y   G  +DA K+
Sbjct: 207 --LSNIYAAAGRWDDAGKV 223


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 315/520 (60%), Gaps = 10/520 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECG 115
            F  +P KD  SWN+++SG   +  +    + F  M      + N V+  +++S   + G
Sbjct: 119 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMG 178

Query: 116 QLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            LD+   L     K+          ++I+ Y K G +D A +LF+EMP ++LV+WN+M+ 
Sbjct: 179 ALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVV 238

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            +  N +AE G+ L  +M   GI P+ +++ ++L  C+     +  + +H  + +     
Sbjct: 239 IHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNA 298

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D    T L+++Y K G L  +  +F EI+ +D + W AM++GYA H  G +A++LFD M 
Sbjct: 299 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 358

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG++ D +TF  LL AC+H+GLV+ G +YF+ M   Y +  + DHY+CMVDLLGR+G+L
Sbjct: 359 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 418

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            +A +LIK MP +P   ++G LL ACRV+  ++L +  A  L +L+P++    Y+ L+NI
Sbjct: 419 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN-YIMLSNI 477

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           Y+A   W D +++R  MKE  + + PG S+IE G  +H F  GD++HP    IH KL+EL
Sbjct: 478 YSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 537

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            ++++ AG  P  EF LH + EEVK  ++  HSEKLAIAFGL+    G P+ + KNLR+C
Sbjct: 538 IRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRIC 597

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K+ S +EKR II+RD+ RFHHF DG CSC DYW
Sbjct: 598 GDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 3/244 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLRMMIGLGIRP 196
           ++S Y K G  + A++LFDEMP K+LV+WN++++G     +    L    RM    G +P
Sbjct: 103 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 162

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  +L SV+  C+ + +L  GK +H +V K  +      +  LI+MY K G L+ A +LF
Sbjct: 163 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 222

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E+  + +V+WN+M+  +  +G  EK + LF+ MK  G+ PD  T VALL AC   GL  
Sbjct: 223 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-G 281

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
              +   + ++  G  A     T +++L  + G+L  + D+ +++  + + A +  +L+ 
Sbjct: 282 RQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTAMLAG 340

Query: 377 CRVH 380
             VH
Sbjct: 341 YAVH 344



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 15/299 (5%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S + S++   S  +S+     +H  V KS    D      L+SMY K G  EDA +LF E
Sbjct: 63  SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 317
           +  KD+V+WN+++SG +  G     L  F +M+ E G +P+ +T ++++ AC   G +D 
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +    +V   G++ K      ++++ G+ G L  A  L ++MP +       +  S  
Sbjct: 183 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS----LVSWNSMV 237

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
            +H     AE   M+LFNL     AG     A + A ++   D    R +   +  +   
Sbjct: 238 VIHNHNGYAE-KGMDLFNL--MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 294

Query: 438 GYS--WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           G++   I    +++ +    R++       +  +E++ R ++A       +A+HA G E
Sbjct: 295 GFNADIIIATALLNLYAKLGRLNAS----EDIFEEIKDRDRIAWTAMLAGYAVHACGRE 349


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/628 (37%), Positives = 341/628 (54%), Gaps = 78/628 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA----------------------- 57
           G++  A  +F+K+P  DVVS+N ++S  +LN  D  A                       
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSIL 310

Query: 58  -------AFDFFQRLP---IKDTASWNT-----MISGFVQKKNMAKARDLFLAMPEKNSV 102
                  AFD  +++    IK  A  +      ++  + +   +  A  +F  M  ++ +
Sbjct: 311 KACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLI 370

Query: 103 SWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA----------- 137
            W+A+ISG    G+ D+A  +F                A +KS  +  A           
Sbjct: 371 LWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALA 430

Query: 138 --------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                         +I  Y K   +  A ++F+E  + +++   +MI    +    E  +
Sbjct: 431 EKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 490

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           KL   M+  G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D  A   L+  Y
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 550

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +EDA   F  +  + VV+W+AMI G AQHG G++AL LF +M DEG+ P+ IT  
Sbjct: 551 AKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMT 610

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           ++L ACNHAGLVD   +YF+SM   +GI    +HY+CM+DLLGRAGKL +A++L+  MPF
Sbjct: 611 SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +   +++G LL A RVHK  +L + AA  LF L P   +G +V LAN YA+   W++VA+
Sbjct: 671 QANASVWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASSGMWNEVAK 729

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  MK++N+ K P  SW+EV   VH F  GD+ HP    I+ KL EL   M  AGY+P+
Sbjct: 730 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 789

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
           ++  LH +    KE LL  HSE+LA+AF L+  P G PIRV KNLR+C DCH A K+IS 
Sbjct: 790 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 849

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  REII+RD  RFHHF+DGTCSCGDYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 43/352 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N +IS + + +    AR +F  +P+   VSWS++++ Y   G    A++ F         
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 126 ----VAPV------------------------KSVVAWTAMISGYMKFGKVDLAEKLFDE 157
                 PV                          V    A+++ Y  FG +D A ++FDE
Sbjct: 101 CNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDE 160

Query: 158 MPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
             + +N V+WN +++ YV+N    D +++   M+  GI+P     S V+  C+   ++  
Sbjct: 161 AGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDA 220

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+QVH +V +    KD      L+ MY K G ++ A  +F ++   DVV+WNA+ISG   
Sbjct: 221 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           +G   +A+ L  +MK  G+ P+     ++L AC  AG  DLG Q    M+      A  D
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK---ANADSD 337

Query: 337 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
            Y    +VD+  +   L +A+ +   M  +    ++  L+S C    R D A
Sbjct: 338 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHDEA 388



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           DD    FD  +    ++  SWN ++S +V+      A  +F  M     +     +S ++
Sbjct: 152 DDARRVFD--EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 109 SGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +       +D   ++     ++   K V    A++  Y+K G+VD+A  +F++MP  ++V
Sbjct: 210 NACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 269

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNA+I+G V N      ++LL  M   G+ PN   LSS+L  C+   +  LG+Q+H  +
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 329

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K+    D      L+ MY K   L+DA K+F  +  +D++ WNA+ISG +  G+ ++A 
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAF 389

Query: 285 RLFDKMKDEGMKPDSITFVALL 306
            +F  ++ EG+  +  T  A+L
Sbjct: 390 SIFYGLRKEGLGVNRTTLAAVL 411



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 47/363 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------LNSDDVVA 57
           +  V+WN +++ + K   +  DA ++F ++    +       SC++       N D    
Sbjct: 165 RNAVSWNGLMSAYVKND-QCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 223

Query: 58  AFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 R+   KD  + N ++  +V+   +  A  +F  MP+ + VSW+A+ISG +  G 
Sbjct: 224 VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 117 LDKAVELFKVAPVKSVVAWTAMISG------------------------------YMKFG 146
             +A+EL        +V    M+S                               Y+  G
Sbjct: 284 DHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 147 KVDL---------AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            VD+         A K+FD M  ++L+ WNA+I+G       ++   +   +   G+  N
Sbjct: 344 LVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVN 403

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++L++VL   + L +    +QVH L  K     D   +  LI  Y KC  L DA ++F 
Sbjct: 404 RTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFE 463

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E    D++   +MI+  +Q   GE A++LF +M  +G++PD     +LL AC      + 
Sbjct: 464 ECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 523

Query: 318 GIQ 320
           G Q
Sbjct: 524 GKQ 526



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +A ++S  L   +   +L  G  +H  + KS      +    LIS Y KC     A ++F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVF 60

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            EI     V+W+++++ Y+ +G    A++ F  M+ EG+
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/522 (44%), Positives = 305/522 (58%), Gaps = 9/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIE 113
           AF  F  +P K+ ASW   ISG+V      +A D+F  + E     +S S   ++S    
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKR 221

Query: 114 CGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G L         + +   V++V   TA++  Y K G ++ A  +FD M  KN+V+W++M
Sbjct: 222 TGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSM 281

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY  N   ++ L L   M+  G++P+  ++  VL  C+ L +L+LG     L+  +  
Sbjct: 282 IQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEF 341

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             ++   T LI MY KCG ++ A ++F  +++KD V WNA ISG A  G  + AL LF +
Sbjct: 342 LDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQ 401

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+  G+KPD  TFV LL AC HAGLV+ G +YF+SM   + +  + +HY CMVDLLGRAG
Sbjct: 402 MEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAG 461

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA  LIK MP +    ++G LL  CR+H+   L E     L  L P + +G YV L+
Sbjct: 462 CLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWH-SGNYVLLS 520

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYAA  KW++ A+IR  M E  V K+PGYSWIEV  VVH+F  GD  HP    I+ KL 
Sbjct: 521 NIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLG 580

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           EL K +K AGYVP  +  L  + EE KE  +  HSEKLA+AFGLI       I V KNLR
Sbjct: 581 ELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLR 640

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A K+IS I  REIIVRD  RFH F DG CSC DYW
Sbjct: 641 VCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 195/394 (49%), Gaps = 35/394 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N VL  F+   G    +  + D+  +P++  +N M+  ++LN D    + + +  +  K+
Sbjct: 46  NKVLR-FSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN-DCFQESIEIYHSMR-KE 102

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG-QLDKAVELFKVAP 128
             S ++    FV K   A AR L   +  K       M S  ++ G + D  V++     
Sbjct: 103 GLSPDSFTFPFVLK---ACARVLDSELGVK-------MHSLVVKAGCEADAFVKI----- 147

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                   ++I+ Y K G +D A K+FD++P KN  +W A I+GYV      + + + R 
Sbjct: 148 --------SLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRR 199

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           ++ +G+RP++ SL  VL  C     L+ G+ + + + ++ + ++    T L+  Y KCG+
Sbjct: 200 LLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGN 259

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +E A  +F  +  K++V+W++MI GYA +G  ++AL LF KM +EG+KPD    V +L +
Sbjct: 260 MERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCS 319

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ-- 366
           C   G ++LG  +  +++N           T ++D+  + G++  A ++ + M  K +  
Sbjct: 320 CARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVV 378

Query: 367 --PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
              AI G  +S    H +  L  F  M    + P
Sbjct: 379 WNAAISGLAMSG---HVKDALGLFGQMEKSGIKP 409



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 1/154 (0%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            S L+  K +H  + +  L +DT  L  ++      G+   + ++  + +  ++  +N M
Sbjct: 20  FSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTM 79

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I G   +   ++++ ++  M+ EG+ PDS TF  +L AC      +LG++   S+V   G
Sbjct: 80  IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK-MHSLVVKAG 138

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             A       +++L  + G +  A  +   +P K
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK 172


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 306/523 (58%), Gaps = 9/523 (1%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CG 115
             A+D   R   KD  SW TMI+G+ Q     KA   F  M ++   S    ++  +  C 
Sbjct: 526  TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 585

Query: 116  QLDKAVELFKVAPVKSVVAWT-------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             L    E  ++     V  ++       A+++ Y K G ++ A   F++    + + WNA
Sbjct: 586  GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNA 645

Query: 169  MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
            +++G+ ++   E+ L++   M   GI  N  +  S +   S  ++++ GKQVH ++ K+ 
Sbjct: 646  LVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTG 705

Query: 229  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               +T     +ISMY KCG + DA K FLE+  K+ V+WNAMI+ Y++HG G +AL  FD
Sbjct: 706  YDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFD 765

Query: 289  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            +M    ++P+ +T V +L AC+H GLVD GI+YF+SM  +YG+A KP+HY C+VD+L RA
Sbjct: 766  QMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRA 825

Query: 349  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            G L  A D I +MP +P   ++ TLLSAC VHK +++ EFAA +L  L P ++A  YV L
Sbjct: 826  GLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA-TYVLL 884

Query: 409  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
            +N+YA  +KWD     R  MKE  V K PG SWIEV   +H F  GD+ HP    IHE  
Sbjct: 885  SNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYF 944

Query: 469  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            K+L KR    GYV D    L  + +E K+  +  HSEKLAI+FGL+ +P   PI V KNL
Sbjct: 945  KDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNL 1004

Query: 529  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            RVC DCH   K++S +  REIIVRD  RFHHF+ G CSC DYW
Sbjct: 1005 RVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 174/364 (47%), Gaps = 17/364 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFDF 61
           T+ W  +L G  K  G L + ++L  +I +      N  LS  LL+      D+  A   
Sbjct: 69  TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGF-DNNACLSEKLLDFYLFKGDLDGALKV 125

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKA 120
           F  +P +   +WN MI     +    K   LF  M  +N        SG +E C     A
Sbjct: 126 FDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVA 185

Query: 121 VELFKVAPV--------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            ++ +            KS +    +I  Y + G VD A ++FD +  K+  +W AMI+G
Sbjct: 186 FDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISG 245

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
             +N    + ++L   M  LGI P   + SSVL  C  + SL++G+Q+H LV K     D
Sbjct: 246 LSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 305

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
           T     L+S+Y   G L  A  +F  + ++D VT+N +I+G +Q G GEKA+ LF +M+ 
Sbjct: 306 TYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQL 365

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G++PDS T  +L++AC+  G +  G Q   +     G A+       +++L  +   + 
Sbjct: 366 DGLEPDSNTLASLVVACSSDGTLFSG-QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 353 EAVD 356
            A++
Sbjct: 425 TALN 428



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 153/309 (49%), Gaps = 9/309 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A ++F    +++   WN M+  +    ++  +  +F  M  +    N  ++ +++ 
Sbjct: 422 DIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 481

Query: 110 GYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
             I  G L+       ++ K +   +    + +I  Y K GK+D A  +      K++V+
Sbjct: 482 TCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 541

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W  MIAGY + ++ +  L   R M+  GIR +   L++ +  C+ L +L+ G+Q+H    
Sbjct: 542 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 601

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
            S    D      L+++Y KCG++E+A   F + +  D + WNA++SG+ Q G  E+ALR
Sbjct: 602 VSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 661

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F +M  EG+  ++ TF + + A +    +  G Q   +++   G  ++ +    ++ + 
Sbjct: 662 VFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNAIISMY 720

Query: 346 GRAGKLVEA 354
            + G + +A
Sbjct: 721 AKCGSISDA 729



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 154/313 (49%), Gaps = 13/313 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  L +KD +SW  MISG  + +   +A  LF  M          ++S+++S   +   L
Sbjct: 228 FDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 287

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +   +L     K+          A++S Y   G +  AE +F  M  ++ VT+N +I G 
Sbjct: 288 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGL 347

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +  + E  ++L + M   G+ P++++L+S+++ CS   +L  G+Q+H    K     + 
Sbjct: 348 SQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASND 407

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+++Y KC D+E A   FLE + ++VV WN M+  Y        + R+F +M+ E
Sbjct: 408 KIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE 467

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKL 351
            + P+  T+ ++L  C   G ++LG Q    ++     + + + Y C  ++D+  + GKL
Sbjct: 468 EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK---TSFQLNAYVCSVLIDMYAKLGKL 524

Query: 352 VEAVDLIKKMPFK 364
             A D++ +   K
Sbjct: 525 DTAWDILIRFAGK 537



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 147/326 (45%), Gaps = 42/326 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           DT   N ++S +    ++  A  +F  M ++++V+++ +I+G  +CG  +KA+ELFK   
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 126 ---VAPVKSVVA--------------------WT-------------AMISGYMKFGKVD 149
              + P  + +A                    +T             A+++ Y K   ++
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A   F E   +N+V WN M+  Y       +  ++ R M    I PN  +  S+L  C 
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L  L+LG+Q+H  + K+    +    + LI MY K G L+ A  + +    KDVV+W  
Sbjct: 485 RLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 544

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVND 328
           MI+GY Q+   +KAL  F +M D G++ D +     + AC  AGL  L   Q   +    
Sbjct: 545 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACV 602

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEA 354
            G ++       +V L  + G + EA
Sbjct: 603 SGFSSDLPFQNALVTLYSKCGNIEEA 628



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 140/353 (39%), Gaps = 72/353 (20%)

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDT 233
           + S+ E+G+  +      GIRPN  +L  +L GC   + SL  G+++H  + K     + 
Sbjct: 47  DESFQENGIDSVE---NCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNA 103

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+  Y   GDL+ A K+F E+  + + TWN MI   A      K   LF +M +E
Sbjct: 104 CLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNE 163

Query: 294 GMKPDSITFVALLLACN------------HA------------------------GLVDL 317
            + P+  TF  +L AC             HA                        G VD 
Sbjct: 164 NVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDR 223

Query: 318 GIQYFDSMVNDYGIAAKPDH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT 372
             + FD      G+  K DH  +  M+  L +    VEA+ L   M      P P  F +
Sbjct: 224 ARRVFD------GLYLK-DHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSS 276

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKE 430
           +LSAC+  + L++ E   ++   L    ++  YV   L ++Y  +        I  +M +
Sbjct: 277 VLSACKKIESLEIGE--QLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ 334

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
            + V           T+++                EK  EL KRM+L G  PD
Sbjct: 335 RDAVTY--------NTLINGLSQ--------CGYGEKAMELFKRMQLDGLEPD 371


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 329/550 (59%), Gaps = 23/550 (4%)

Query: 37  DVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           D+++ N++++    C L++S     A   F  +P+K   SWNT+I    Q     +A  L
Sbjct: 77  DILTSNMLINMYSKCSLVDS-----ARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKL 131

Query: 93  FLAMPEK----NSVSWSAMIS------GYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
            + M  +    N  + S+++         +EC QL       K A   +    TA++  Y
Sbjct: 132 LIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFS--IKAAIDSNCFVGTALLHVY 189

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K   +  A ++F+ MP KN VTW++M+AGYV+N + E+ L + R    +G   +   +S
Sbjct: 190 AKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMIS 249

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QR 261
           S +  C+ L++L  GKQVH +  KS    +    + LI MY KCG + +A  +F  + + 
Sbjct: 250 SAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEV 309

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           + +V WNAMISG+A+H +  +A+ LF+KM+  G  PD +T+V +L AC+H GL + G +Y
Sbjct: 310 RSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKY 369

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           FD MV  + ++    HY+CM+D+LGRAG + +A DLI++MPF    +++G+LL++C+++ 
Sbjct: 370 FDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYG 429

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            ++ AE AA  LF + P NA G ++ LANIYAA KKWD+VAR R  ++E +V K  G SW
Sbjct: 430 NIEFAEIAAKYLFEMEPNNA-GNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSW 488

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 501
           IE+   +H F  G+R HP++  I+ KL  L   +K   Y  D    LH V E  K+ LL 
Sbjct: 489 IEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLR 548

Query: 502 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
            HSEKLAI FGL+ +P   PIR+ KNLR+CGDCH   K +S    REIIVRDT RFHHFK
Sbjct: 549 HHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFK 608

Query: 562 DGTCSCGDYW 571
           DG CSCG++W
Sbjct: 609 DGFCSCGEFW 618



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 5/235 (2%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ ++     ++    +I+ Y K   VD A K F+EMP K+LV+WN +I    +N+   +
Sbjct: 68  QIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDRE 127

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            LKLL  M   G   N  ++SSVL  C+   ++    Q+H    K+ +  +    T L+ 
Sbjct: 128 ALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLH 187

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y KC  ++DA ++F  +  K+ VTW++M++GY Q+G  E+AL +F   +  G   D   
Sbjct: 188 VYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFM 247

Query: 302 FVALLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             + + AC  AGL  L  G Q   ++ +  G  +     + ++D+  + G + EA
Sbjct: 248 ISSAVSAC--AGLATLIEGKQ-VHAISHKSGFGSNIYVSSSLIDMYAKCGCIREA 299



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 120/273 (43%), Gaps = 48/273 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK+ V+WN+V+ G   Q  + ++A +L  ++ +         +S +L N     A  +
Sbjct: 104 MPVKSLVSWNTVI-GALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILE 162

Query: 61  FFQ--RLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             Q     IK     N  +       + +  ++  A  +F +MPEKN+V+WS+M++GY++
Sbjct: 163 CMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQ 222

Query: 114 CGQLDKAVELFKVAPV---------------------------------------KSVVA 134
            G  ++A+ +F+ A +                                        ++  
Sbjct: 223 NGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYV 282

Query: 135 WTAMISGYMKFGKVDLAEKLFDE-MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            +++I  Y K G +  A  +F   +  +++V WNAMI+G+  ++ A + + L   M   G
Sbjct: 283 SSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRG 342

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
             P+  +   VL  CSH+   + G++   L+ +
Sbjct: 343 FFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVR 375



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S+L  +L  C+   S   G+  H  + +  L  D      LI+MY KC  ++ A K F E
Sbjct: 44  SNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNE 103

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  K +V+WN +I    Q+ +  +AL+L  +M+ EG   +  T  ++L  C     +   
Sbjct: 104 MPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILEC 163

Query: 319 IQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +Q     ++ + I A  D      T ++ +  +   + +A  + + MP K
Sbjct: 164 MQ-----LHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEK 208


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 337/587 (57%), Gaps = 39/587 (6%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-----PIKDT------- 70
           L  A ++F+ +P P+V  +NI++   L N++   A   +++ +     P K T       
Sbjct: 80  LNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKA 139

Query: 71  ------ASWNTMISGFVQKKNMAK--------------------ARDLFLAMPEKNSVSW 104
                 A     +   V K+ ++                     AR +       + + +
Sbjct: 140 CTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICF 199

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +AMI GY++CG+++ A ELF     K+V +W  M+SG  K G ++ A +LF+EM  KN +
Sbjct: 200 NAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEI 259

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W+AMI GY++  + ++ L++  +M    IRP    LSSVL  C++L +L  G+ +H  V
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV 319

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             +    D    T L+ MY KCG L+ A  +F ++++K+V TWNAMI G   HG+ E A+
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAI 379

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF KM+ +  +P+ IT + +L AC H+G+VD G++ F+SM   YGI    +HY C+VDL
Sbjct: 380 ELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDL 439

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG L EA +++  MP +P  A++G LL ACR H  ++L E     L  L P N +G 
Sbjct: 440 LGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQN-SGR 498

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           Y  L+NIYA   +WDDVA +R  MKE  V    G S I+   VVHEF+ GD  HP++ +I
Sbjct: 499 YALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNI 558

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +  LK + KR+K+ G+ P+    L  + EE KE  L +HSEKLAIAFGLI    GT I V
Sbjct: 559 YLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHV 618

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K IS +  REIIVRD  R+HHFK GTCSC D+W
Sbjct: 619 VKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 130/278 (46%), Gaps = 12/278 (4%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  ++ A K+F+ +P  N+  +N +I G ++N+     +     M+    RPN  +  ++
Sbjct: 77  FSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTL 136

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
              C+   + + G QVH  V K  L  D    +  I MY   G++E A ++  E    DV
Sbjct: 137 FKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDV 196

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           + +NAMI GY + G+ E A  LF  M+D+ +   ++  V+ +  C   G+++   + F+ 
Sbjct: 197 ICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNV-MVSGMAKC---GMIEEARELFNE 252

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHK 381
           M     I+     ++ M+D   + G   EA+++   M     +P+  +  ++L+AC    
Sbjct: 253 MKEKNEIS-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLG 307

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            LD   +    + N + +  A     L ++YA   + D
Sbjct: 308 ALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLD 345


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/628 (37%), Positives = 341/628 (54%), Gaps = 78/628 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA----------------------- 57
           G++  A  +F+K+P  DVVS+N ++S  +LN  D  A                       
Sbjct: 158 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSIL 217

Query: 58  -------AFDFFQRLP---IKDTASWNT-----MISGFVQKKNMAKARDLFLAMPEKNSV 102
                  AFD  +++    IK  A  +      ++  + +   +  A  +F  M  ++ +
Sbjct: 218 KACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLI 277

Query: 103 SWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA----------- 137
            W+A+ISG    G+ D+A  +F                A +KS  +  A           
Sbjct: 278 LWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALA 337

Query: 138 --------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                         +I  Y K   +  A ++F+E  + +++   +MI    +    E  +
Sbjct: 338 EKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 397

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           KL   M+  G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D  A   L+  Y
Sbjct: 398 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 457

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +EDA   F  +  + VV+W+AMI G AQHG G++AL LF +M DEG+ P+ IT  
Sbjct: 458 AKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMT 517

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           ++L ACNHAGLVD   +YF+SM   +GI    +HY+CM+DLLGRAGKL +A++L+  MPF
Sbjct: 518 SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 577

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +   +++G LL A RVHK  +L + AA  LF L P   +G +V LAN YA+   W++VA+
Sbjct: 578 QANASVWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASSGMWNEVAK 636

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  MK++N+ K P  SW+EV   VH F  GD+ HP    I+ KL EL   M  AGY+P+
Sbjct: 637 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 696

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
           ++  LH +    KE LL  HSE+LA+AF L+  P G PIRV KNLR+C DCH A K+IS 
Sbjct: 697 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 756

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  REII+RD  RFHHF+DGTCSCGDYW
Sbjct: 757 IVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           DD    FD  +    ++  SWN ++S +V+      A  +F  M     +     +S ++
Sbjct: 59  DDARRVFD--EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 116

Query: 109 SGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +       +D   ++     ++   K V    A++  Y+K G+VD+A  +F++MP  ++V
Sbjct: 117 NACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 176

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WNA+I+G V N      ++LL  M   G+ PN   LSS+L  C+   +  LG+Q+H  +
Sbjct: 177 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 236

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K+    D      L+ MY K   L+DA K+F  +  +D++ WNA+ISG +  G+ ++A 
Sbjct: 237 IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAF 296

Query: 285 RLFDKMKDEGMKPDSITFVALL 306
            +F  ++ EG+  +  T  A+L
Sbjct: 297 SIFYGLRKEGLGVNRTTLAAVL 318



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 7/258 (2%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           V    A+++ Y  FG +D A ++FDE  + +N V+WN +++ YV+N    D +++   M+
Sbjct: 42  VFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 101

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             GI+P     S V+  C+   ++  G+QVH +V +    KD      L+ MY K G ++
Sbjct: 102 WSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD 161

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A  +F ++   DVV+WNA+ISG   +G   +A+ L  +MK  G+ P+     ++L AC 
Sbjct: 162 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 221

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
            AG  DLG Q    M+      A  D Y    +VD+  +   L +A+ +   M  +    
Sbjct: 222 GAGAFDLGRQIHGFMIK---ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLI 277

Query: 369 IFGTLLSACRVHKRLDLA 386
           ++  L+S C    R D A
Sbjct: 278 LWNALISGCSHGGRHDEA 295



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 47/363 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------LNSDDVVA 57
           +  V+WN +++ + K   +  DA ++F ++    +       SC++       N D    
Sbjct: 72  RNAVSWNGLMSAYVKND-QCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ 130

Query: 58  AFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 R+   KD  + N ++  +V+   +  A  +F  MP+ + VSW+A+ISG +  G 
Sbjct: 131 VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 190

Query: 117 LDKAVELFKVAPVKSVVAWTAMISG------------------------------YMKFG 146
             +A+EL        +V    M+S                               Y+  G
Sbjct: 191 DHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG 250

Query: 147 KVDL---------AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            VD+         A K+FD M  ++L+ WNA+I+G       ++   +   +   G+  N
Sbjct: 251 LVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVN 310

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++L++VL   + L +    +QVH L  K     D   +  LI  Y KC  L DA ++F 
Sbjct: 311 RTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFE 370

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E    D++   +MI+  +Q   GE A++LF +M  +G++PD     +LL AC      + 
Sbjct: 371 ECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 430

Query: 318 GIQ 320
           G Q
Sbjct: 431 GKQ 433



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 5/175 (2%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRK 262
           V+L C  +   QLG QVH +   +    D      L++MY   G ++DA ++F E    +
Sbjct: 15  VVLKC--VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSER 72

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           + V+WN ++S Y ++ +   A+++F +M   G++P    F  ++ AC  +  +D G Q  
Sbjct: 73  NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVH 132

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
            +MV   G          +VD+  + G++  A  + +KMP       +  L+S C
Sbjct: 133 -AMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGC 185


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/625 (37%), Positives = 361/625 (57%), Gaps = 67/625 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML----------SCILL--- 50
           K +V+WNS++ G   Q    +DA + ++ + +  ++  N  L           CILL   
Sbjct: 167 KDSVSWNSMITGL-DQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQ 225

Query: 51  -NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            + + +    D        D +  NT+++ + +   +A+ + +F  M E++ VSW+ +I 
Sbjct: 226 THGEGIKLGLDM-------DVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIG 278

Query: 110 GYIECG-QLDKAVELFK-----------------VAPVKSVVAW---------------- 135
              + G  + +A+E+F                  +A V S+                   
Sbjct: 279 ALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVK 338

Query: 136 ------TAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRM 188
                  A+++ Y K G+++  E++F  M  + + V+WN+MI+GY+ N      + L+ +
Sbjct: 339 DDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWL 398

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G R +  + ++VL  C+ +++L+ G +VH    ++ L  D    + L+ MY KCG 
Sbjct: 399 MMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGR 458

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ A + F  +  +++ +WN+MISGYA+HG G+ ALRLF +MK  G  PD ITFV +L A
Sbjct: 459 IDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSA 518

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H GLVD G +YF SM   YG+  + +HY+CMVDLLGRAG+L +  + I KMP KP   
Sbjct: 519 CSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNIL 578

Query: 369 IFGTLLSAC--RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
           I+ T+L AC     ++ +L   AA  LFN++P NA   YV L+N+YA+  KW+D+AR R 
Sbjct: 579 IWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVN-YVLLSNMYASGGKWEDMARTRR 637

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           +M+E  V K  G SW+ +   VH F +GD  HPE   I+ KLKEL+K+++ AGYVP ++F
Sbjct: 638 AMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKF 697

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
           AL+ +  E KE+LL +HSEKLA+AF L +   G PIR+ KNLRVCGDCH A KYIS +  
Sbjct: 698 ALYDLEPENKEELLSYHSEKLAVAFVLTRNS-GLPIRIMKNLRVCGDCHSAFKYISKVVD 756

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R I++RD+ RFHHF+DG CSC DYW
Sbjct: 757 RSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 2/187 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +I+ Y++ G    A KLFDEMP +N VTW  +I+GY +N   ED   +L+ MI  G  
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL 98

Query: 196 PNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDAC 253
           PN  +  S +  C   +   + G+QVH    ++ L     A+   LI+MY KCGD++ A 
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  +  KD V+WN+MI+G  Q+   E A++ ++ M+  G+ P +   ++ L +C   G
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 314 LVDLGIQ 320
            + LG Q
Sbjct: 219 CILLGQQ 225



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 44/352 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           NT+I+ +V+  +   AR LF  MP++N V+W+ +ISGY + G  + A  + K        
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL 98

Query: 126 ---------VAPVKSVVAW------------------------TAMISGYMKFGKVDLAE 152
                    +   +  + W                          +I+ Y K G +D A 
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
            +F  M  K+ V+WN+MI G  +N   ED +K    M   G+ P+  +L S L  C+ L 
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
            + LG+Q H    K  L  D +    L+++Y +   L +  K+F  +  +D V+WN +I 
Sbjct: 219 CILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIG 278

Query: 273 GYAQHGKG-EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
             A  G    +A+ +F +M   G  P+ +TF+ LL   +      L  Q   +++  Y +
Sbjct: 279 ALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQ-IHALILKYNV 337

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
                    ++   G++G++    ++  +M  +     + +++S   +H  L
Sbjct: 338 KDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG-YIHNEL 388



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 151/326 (46%), Gaps = 21/326 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYI 112
           D+  A   F  +  KD+ SWN+MI+G  Q K    A   + +M +   + S  A+IS   
Sbjct: 153 DIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALS 212

Query: 113 ECGQLDKAV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            C  L   +       E  K+     V     +++ Y +  ++   +K+F  M  ++ V+
Sbjct: 213 SCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVS 272

Query: 166 WNAMIAGYVENSWA-EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           WN +I    ++  +  + +++   M+  G  PN  +  ++L   S LS+ +L  Q+H L+
Sbjct: 273 WNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALI 332

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA 283
            K  +  D      L++ Y K G++E+  ++F  + +R+D V+WN+MISGY  +    KA
Sbjct: 333 LKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKA 392

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-----NDYGIAAKPDHY 338
           + L   M   G + D  TF  +L AC     ++ G++     +     +D  I       
Sbjct: 393 MDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIG------ 446

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFK 364
           + +VD+  + G++  A      MP +
Sbjct: 447 SALVDMYSKCGRIDYASRFFNLMPVR 472



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  V K     D      LI++Y + GD   A KLF E+  ++ VTW  +ISGY Q+G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHA-----------------GLVDLGIQYFD 323
           E A  +  +M  EG  P+   F + + AC  +                 GL D  +   +
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 324 SMVNDYGIAAKPDHYTCMVDLL 345
            ++N Y      DH   +  L+
Sbjct: 143 GLINMYAKCGDIDHARSVFGLM 164


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/551 (42%), Positives = 327/551 (59%), Gaps = 28/551 (5%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA++ FD+IP P+ V    M S  + N + V  +   F++L          + SG     
Sbjct: 143 DARKAFDEIPSPNPVIITAMASGYVRN-NLVYPSLALFRKL----------IASGSATAV 191

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           + A A   F A         ++ +   +    LD    +              M+  Y K
Sbjct: 192 DEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNT-----------MLDAYAK 240

Query: 145 FGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNASS 200
            G+ DL  A K+FD M  K++V+WN+MIA Y +N  + D L L R M+ +   I+ NA +
Sbjct: 241 GGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVT 299

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           LS++LL C+H  ++Q GK +H  V +  L ++    T ++ MY KCG +E A K F +I+
Sbjct: 300 LSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIK 359

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K++++W+AMI+GY  HG G++AL +F++M   G  P+ ITF+++L AC+HAGL+D G  
Sbjct: 360 EKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRY 419

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           ++++M   +GI    +HY CMVDLLGRAG L EA  LIK+M  KP  AI+G LLSACR+H
Sbjct: 420 WYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIH 479

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           K ++LAE +A  LF L+  N  G YV L+NIYA    W DV R+R+ +K   + K PGYS
Sbjct: 480 KNVELAEISAKRLFELDATN-CGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYS 538

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
            +E+    H F  GD+ HP+   I+  L +L ++M+ AGYVP+    LH + EE K   L
Sbjct: 539 SVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASAL 598

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLAIAF L+    G+ I V KNLRVC DCH A K I+ I +REIIVRD  RFHHF
Sbjct: 599 HIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHF 658

Query: 561 KDGTCSCGDYW 571
           KDG+CSCGDYW
Sbjct: 659 KDGSCSCGDYW 669



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 217 GKQVHQLVFKSPLC-KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           G+Q+H L  +S L   D  + + L+ MY  C    DA K F EI   + V   AM SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAK 334
           ++     +L LF K+   G         AL+     A + D GI     ++V   G+   
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 335 PDHYTCMVDLLGRAGK 350
                 M+D   + G+
Sbjct: 228 AGVVNTMLDAYAKGGR 243



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI--PQPDVVSYNIMLSCILL---NSDDVVAA 58
           K  V+WNS++A +A Q G   DA  L+ K+      +    + LS ILL   ++  +   
Sbjct: 258 KDVVSWNSMIALYA-QNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTG 316

Query: 59  ---FDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
               +   R+ +++     T +     K   +  AR  F  + EKN +SWSAMI+GY   
Sbjct: 317 KCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMH 376

Query: 115 GQLDKAVELF 124
           G   +A+++F
Sbjct: 377 GHGQEALDIF 386


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/527 (42%), Positives = 313/527 (59%), Gaps = 12/527 (2%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
           DD    FD+   +P +D   WN +ISG       A+A  LF  M ++    N  + +A++
Sbjct: 355 DDAKKVFDW---IPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISG----YMKFGKVDLAEKLFDEMPTKNLV 164
                   +    ++  +A     ++ + +++G    Y K   ++ A ++F++  + +++
Sbjct: 412 KSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDII 471

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            + +MI    +    ED +KL   M+  G+ P+   LSS+L  C+ LS+ + GKQVH  +
Sbjct: 472 AFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K     D  A   L+  Y KCG +EDA   F  +  K VV+W+AMI G AQHG G++AL
Sbjct: 532 IKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRAL 591

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F +M DE + P+ IT  ++L ACNHAGLVD   +YF+SM   +GI    +HY CM+DL
Sbjct: 592 DVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDL 651

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAGKL +A++L+  MPF+   A++G LL+A RVH+  +L   AA  LF L P   +G 
Sbjct: 652 LGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEP-EKSGT 710

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           +V LAN YA+   WDDVA++R  MK++ V K P  SW+E+   VH F  GD+ HP    I
Sbjct: 711 HVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDI 770

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           + KL EL   M  AGYVP++E  LH V +  KE LL  HSE+LA+AF LI  P G PIRV
Sbjct: 771 YAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRV 830

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K+IS I  REII+RD  RFHHF+DG CSC DYW
Sbjct: 831 KKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 165/352 (46%), Gaps = 43/352 (12%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI-----SGYIECGQLD 118
           ++T SWN ++S +V+    + A  +F  M     + N   +S ++     S  +E G+  
Sbjct: 165 RNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKV 224

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
            A+ + +    K V    A++  Y K G + +A  +F ++P  ++V+WNA I+G V +  
Sbjct: 225 HAM-VIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGH 283

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            +  L+LL  M   G+ PN  +LSS+L  C+   +  LG+Q+H  + K+    D      
Sbjct: 284 DQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG 343

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY K G L+DA K+F  I ++D+V WNA+ISG +   +  +AL LF +M+ EG   +
Sbjct: 344 LVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVN 403

Query: 299 SITFVALLLACN-----------HAGLVDLGIQYFDSMVN------------DYGIAAKP 335
             T  A+L +             HA    LG      +VN            +Y      
Sbjct: 404 RTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFE 463

Query: 336 DH-------YTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 377
            H       +T M+  L +     +A+ L  +M  K   P P +  +LL+AC
Sbjct: 464 KHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 10/276 (3%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A   F ++P  D  SWN  ISG V   +   A +L L M       N  + S+++ 
Sbjct: 252 DIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311

Query: 110 GYIECG--QLDKAVELFKV---APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                G   L + +  F V   A   + +A+  ++  Y K G +D A+K+FD +P ++LV
Sbjct: 312 ACAGSGAFNLGRQIHGFMVKANADSDNYIAF-GLVDMYAKHGLLDDAKKVFDWIPQRDLV 370

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WNA+I+G    +   + L L   M   G   N ++L++VL   + L ++   +QVH L 
Sbjct: 371 LWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALA 430

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K     D+  +  LI  Y KC  L  A ++F +    D++ + +MI+  +Q   GE A+
Sbjct: 431 EKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAI 490

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +LF +M  +G+ PD     +LL AC      + G Q
Sbjct: 491 KLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ 526



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S Y K      A ++FDE+P    V+W++++  Y  N+   D L   R M    +R N
Sbjct: 43  LLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCN 102

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              L  V+L C+       G Q+H L   + L  D      L++MY   G +++A  +F 
Sbjct: 103 EFVL-PVVLKCA--PDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 258 EIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           E    ++ V+WN ++S Y ++ +   A+++F +M   G++P+   F  ++ AC  +  ++
Sbjct: 160 EAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLE 219

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G +   +MV   G          +VD+  + G +  A  +  K+P +     +   +S 
Sbjct: 220 AG-RKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISG 277

Query: 377 CRVH 380
           C +H
Sbjct: 278 CVLH 281


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/539 (41%), Positives = 316/539 (58%), Gaps = 13/539 (2%)

Query: 44  MLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------ 97
           ++ C L    DV A    F  +P +D  SWN++ISG+  +  + K  ++   M       
Sbjct: 72  LVGCYLRLGHDVCAE-KLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGF 130

Query: 98  EKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             N V++ +MIS  +  G  ++   +     K   ++ V    A I+ Y K G +  + K
Sbjct: 131 RPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCK 190

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LF+++  KNLV+WN MI  +++N  AE GL    M   +G  P+ ++  +VL  C  +  
Sbjct: 191 LFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGV 250

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           ++L + +H L+       +    T L+ +Y K G LED+  +F EI   D + W AM++ 
Sbjct: 251 VRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAA 310

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           YA HG G  A++ F+ M   G+ PD +TF  LL AC+H+GLV+ G  YF++M   Y I  
Sbjct: 311 YATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDP 370

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
           + DHY+CMVDLLGR+G L +A  LIK+MP +P   ++G LL ACRV+K   L   AA  L
Sbjct: 371 RLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERL 430

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
           F L P +    YV L+NIY+A   W D +RIR  MK+  +V+  G S+IE G  +H+F  
Sbjct: 431 FELEPRDGRN-YVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVV 489

Query: 454 GDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           GD  HPE   I +KLKE+ K+MK   GY    EF LH VGE+VKE+++  HSEK+A+AFG
Sbjct: 490 GDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFG 549

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           L+ V    PI + KNLR+CGDCH   K IS IEKR II+RD+ RFHHF DG+CSC DYW
Sbjct: 550 LLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 148/350 (42%), Gaps = 71/350 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP------QPDVVSYNIMLS-CILLNSD 53
           M  +  V+WNS+++G++  RG L    E+  ++       +P+ V++  M+S C+   S 
Sbjct: 92  MPERDLVSWNSLISGYS-GRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSK 150

Query: 54  D-------VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
           +       +V  F   + + +      N  I+ + +  ++  +  LF  +  KN VSW+ 
Sbjct: 151 EEGRCIHGLVMKFGVLEEVKVV-----NAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNT 205

Query: 107 MISGYIECGQLDKAVELFKVA-----------------------------PVKSVVAW-- 135
           MI  +++ G  +K +  F ++                              +  ++ +  
Sbjct: 206 MIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGG 265

Query: 136 --------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                   TA++  Y K G+++ +  +F E+ + + + W AM+A Y  + +  D +K   
Sbjct: 266 FSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFE 325

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMY 243
           +M+  GI P+  + + +L  CSH   ++ GK   + + K     P     + +  L+   
Sbjct: 326 LMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLG-- 383

Query: 244 CKCGDLEDACKLFLEI-QRKDVVTWNAMISG---YAQHGKGEKAL-RLFD 288
            + G L+DA  L  E+        W A++     Y     G KA  RLF+
Sbjct: 384 -RSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFE 432


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/645 (36%), Positives = 346/645 (53%), Gaps = 76/645 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF- 59
           M  +  V W  ++ G+A + GK  ++  LF+K+ +  VV   + +  ++     + A   
Sbjct: 219 MQERDLVTWTVMIGGYA-ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 277

Query: 60  -----DFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                D+ QR   + D      MI  + +   +  AR++F  M EKN +SWSAMI+ Y  
Sbjct: 278 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 337

Query: 114 CGQLDKAVELFKV---------------------------------------APVKSVVA 134
            GQ  KA++LF++                                         +++++ 
Sbjct: 338 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIV 397

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE-----NSW----------- 178
              ++  Y  +  +D A  LFD M  ++ V+W+ M+ G+ +     N +           
Sbjct: 398 ANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGA 457

Query: 179 ------------AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
                       A + L L   M   G+ P+  ++ +V+  C+ L ++   + +   + +
Sbjct: 458 RPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 517

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T +I M+ KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL L
Sbjct: 518 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 577

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M   G+ P+ IT V+LL AC+HAGLV+ G+++F  M  DY + A   HYTC+VDLLG
Sbjct: 578 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 637

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG+L EA+ LI+ M  +    ++G  L ACR HK + LAE AA +L  L P N  G Y+
Sbjct: 638 RAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNP-GHYI 696

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+NIYA   +W+DVA+ R  M +  + K+PG++WIEV    H+F  GD  HP    I+E
Sbjct: 697 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYE 756

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            LK L  +++L GYVPD  F LH V EE+K  +L  HSEKLAIAFGLI  P  TPIR+ K
Sbjct: 757 MLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIK 816

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLRVCGDCH   K +SAI  R IIVRD  RFHHFK+G CSCGDYW
Sbjct: 817 NLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 18/254 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VA 127
           N +I  +   + +  A  LF  M  ++SVSWS M+ G+ + G        F+        
Sbjct: 117 NKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGAR 176

Query: 128 PVKSVVAWT------------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           P    + +             A++  Y+K  +++ A  LFD+M  ++LVTW  MI GY E
Sbjct: 177 PDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 236

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
              A + L L   M   G+ P+  ++ +V+  C+ L ++   + +   + +     D   
Sbjct: 237 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 296

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            T +I MY KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL LF  M   GM
Sbjct: 297 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGM 356

Query: 296 KPDSITFVALLLAC 309
            PD IT  +LL AC
Sbjct: 357 LPDKITLASLLYAC 370



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 185/432 (42%), Gaps = 97/432 (22%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----------------- 65
           L DA  LFD +   D VS+++M+        D +  F  F+ L                 
Sbjct: 129 LDDAYGLFDGMCVRDSVSWSVMVGG-FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIR 187

Query: 66  PIKDTASWN-TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
             +D  +    ++  +V+ + +  AR LF  M E++ V+W+ MI GY ECG+ ++++ LF
Sbjct: 188 ACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 247

Query: 125 -----------KVAPVKSVVAW----------------------------TAMISGYMKF 145
                      KVA V  V A                             TAMI  Y K 
Sbjct: 248 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 307

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G V+ A ++FD M  KN+++W+AMIA Y  +      L L RMM+  G+ P+  +L+S+L
Sbjct: 308 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 367

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C +  +L   +QVH       + ++      L+  Y     L+DA  LF  +  +D V
Sbjct: 368 YACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSV 427

Query: 266 TWNAMISGYAQ----------------------------HGKGEKALRLFDKMKDEGMKP 297
           +W+ M+ G+A+                             G   ++L LFDKM++EG+ P
Sbjct: 428 SWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVP 487

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLGRAGKLV 352
           D +  V ++ AC       LG  +    ++DY I  K         T M+D+  + G + 
Sbjct: 488 DKVAMVTVVFAC-----AKLGAMHKARTIDDY-IQRKKFQLDVILGTAMIDMHAKCGCVE 541

Query: 353 EAVDLIKKMPFK 364
            A ++  +M  K
Sbjct: 542 SAREIFDRMEEK 553



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 36/266 (13%)

Query: 108 ISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           IS  + C  L +  ++   A V    +++V    +I  Y  +  +D A  LFD M  ++ 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W+ M+ G+ +     +     R +I  G RP+  +L  V+  C  L +LQ+       
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMA------ 198

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
                          L+ MY KC ++EDA  LF ++Q +D+VTW  MI GYA+ GK  ++
Sbjct: 199 ---------------LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 243

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY----- 338
           L LF+KM++EG+ PD +  V ++ AC       LG  +   +++DY I  K         
Sbjct: 244 LVLFEKMREEGVVPDKVAMVTVVFAC-----AKLGAMHKARIIDDY-IQRKKFQLDVILG 297

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFK 364
           T M+D+  + G +  A ++  +M  K
Sbjct: 298 TAMIDMYAKCGCVESAREIFDRMEEK 323


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 315/520 (60%), Gaps = 10/520 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECG 115
            F  +P KD  SWN+++SG   +  +    + F  M      + N V+  +++S   + G
Sbjct: 176 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMG 235

Query: 116 QLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            LD+   L     K+          ++I+ Y K G +D A +LF+EMP ++LV+WN+M+ 
Sbjct: 236 ALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVV 295

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            +  N +AE G+ L  +M   GI P+ +++ ++L  C+     +  + +H  + +     
Sbjct: 296 IHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNA 355

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D    T L+++Y K G L  +  +F EI+ +D + W AM++GYA H  G +A++LFD M 
Sbjct: 356 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 415

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG++ D +TF  LL AC+H+GLV+ G +YF+ M   Y +  + DHY+CMVDLLGR+G+L
Sbjct: 416 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 475

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            +A +LIK MP +P   ++G LL ACRV+  ++L +  A  L +L+P++    Y+ L+NI
Sbjct: 476 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN-YIMLSNI 534

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           Y+A   W D +++R  MKE  + + PG S+IE G  +H F  GD++HP    IH KL+EL
Sbjct: 535 YSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 594

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            ++++ AG  P  EF LH + EEVK  ++  HSEKLAIAFGL+    G P+ + KNLR+C
Sbjct: 595 IRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRIC 654

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K+ S +EKR II+RD+ RFHHF DG CSC DYW
Sbjct: 655 GDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 3/244 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLRMMIGLGIRP 196
           ++S Y K G  + A++LFDEMP K+LV+WN++++G     +    L    RM    G +P
Sbjct: 160 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 219

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  +L SV+  C+ + +L  GK +H +V K  +      +  LI+MY K G L+ A +LF
Sbjct: 220 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 279

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E+  + +V+WN+M+  +  +G  EK + LF+ MK  G+ PD  T VALL AC   GL  
Sbjct: 280 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-G 338

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
              +   + ++  G  A     T +++L  + G+L  + D+ +++  + + A +  +L+ 
Sbjct: 339 RQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTAMLAG 397

Query: 377 CRVH 380
             VH
Sbjct: 398 YAVH 401



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 13/298 (4%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S + S++   S  +S+     +H  V KS    D      L+SMY K G  EDA +LF E
Sbjct: 120 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 179

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 317
           +  KD+V+WN+++SG +  G     L  F +M+ E G +P+ +T ++++ AC   G +D 
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +    +V   G++ K      ++++ G+ G L  A  L ++MP +       +  S  
Sbjct: 240 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS----LVSWNSMV 294

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
            +H     AE   M+LFNL     AG     A + A ++   D    R +   +  +   
Sbjct: 295 VIHNHNGYAE-KGMDLFNL--MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 351

Query: 438 GYSW-IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           G++  I + T +    +       L +  +  +E++ R ++A       +A+HA G E
Sbjct: 352 GFNADIIIATALLNLYAK---LGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGRE 406


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/513 (40%), Positives = 313/513 (61%), Gaps = 13/513 (2%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEK----------NSVSWSAMISGYIECGQLD 118
            D ASWN ++ G++   +  KA  L++ M E           N+   +  + G  +  Q+ 
Sbjct: 1102 DLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIH 1161

Query: 119  KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
              V   K      +   + ++  Y+K G+++ A ++F E+P+ + V W  MI+G VEN  
Sbjct: 1162 AVV--VKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQ 1219

Query: 179  AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             E  L     M    ++P+  + ++++  CS L++L+ G+Q+H  + K     D   +T 
Sbjct: 1220 EEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTS 1279

Query: 239  LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            L+ MY KCG++EDA  LF     + + +WNAMI G AQHG  ++AL+ F  MK  G+ PD
Sbjct: 1280 LVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPD 1339

Query: 299  SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
             +TF+ +L AC+H+GLV    + F SM  +YGI  + +HY+C+VD L RAG++ EA  +I
Sbjct: 1340 RVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVI 1399

Query: 359  KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
              MPF+   +++ TLL+ACRV    +  +  A  L  L P+++A  YV L+N+YAA  +W
Sbjct: 1400 SSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAA-YVLLSNVYAAANQW 1458

Query: 419  DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            ++VA  R  M++ NV K PG+SW+++   VH F +GDR H E   I+ K++ + KR++  
Sbjct: 1459 ENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREE 1518

Query: 479  GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
            GYVPD +FAL  V EE KE  L +HSEKLAIA+GL+K P  T +RV KNLRVCGDCH A 
Sbjct: 1519 GYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAI 1578

Query: 539  KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KYIS + KREI++RD  RFHHF++G CSCGDYW
Sbjct: 1579 KYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 182/399 (45%), Gaps = 49/399 (12%)

Query: 9    WNSVLAGFAKQRGKLKDAQELF-DKIPQP---DVVSYNIMLSCIL-LNSDDVVAAFD-FF 62
            WN  L+ F  QRG+  +A + F D I      D +++ +ML+ +  LN  ++        
Sbjct: 903  WNKALSRFL-QRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIV 961

Query: 63   QRLPIKDTAS-WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             R  +    S  N +I+ +V+  ++++AR +F  M E + +SW+ MISG    G  + +V
Sbjct: 962  MRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSV 1021

Query: 122  ELF----------------------------------------KVAPVKSVVAWTAMISG 141
             +F                                        K   V      TA+I  
Sbjct: 1022 GMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDV 1081

Query: 142  YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
            Y K GK++ AE LF      +L +WNA++ GY+ +      L+L  +M   G R +  +L
Sbjct: 1082 YSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITL 1141

Query: 202  SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             +       L  L+ GKQ+H +V K     D    + ++ MY KCG++E A ++F EI  
Sbjct: 1142 VNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPS 1201

Query: 262  KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
             D V W  MISG  ++G+ E AL  + +M+   ++PD  TF  L+ AC+    ++ G Q 
Sbjct: 1202 PDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1261

Query: 322  FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
              ++V     A  P   T +VD+  + G + +A  L K+
Sbjct: 1262 HANIVK-LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR 1299



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 166/382 (43%), Gaps = 49/382 (12%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDF 61
            V WN++L+  A    K  D   LF  + +  V +    L+     C+L  S    +A + 
Sbjct: 725  VTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASP---SASES 781

Query: 62   FQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 +K    W+  ++G     + +   + +AR LF  M  ++ V W+ M+  Y++   
Sbjct: 782  LHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCL 841

Query: 117  LDKAVELFK---VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---------NLV 164
              +A+ LF        +        +S  +K  K  L  K F    TK         +++
Sbjct: 842  EYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVI 901

Query: 165  TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
             WN  ++ +++   A + +     MI   +  +  +   +L   + L+ L+LGKQ+H +V
Sbjct: 902  VWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIV 961

Query: 225  FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             +S L +  +    LI+MY K G +  A  +F ++   D+++WN MISG    G  E ++
Sbjct: 962  MRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSV 1021

Query: 285  RLFDKMKDEGMKPDSITFVALLLACN------------HAGLVDLGIQYFDSMVNDYGIA 332
             +F  +  + + PD  T  ++L AC+            HA  +  G+   DS V+     
Sbjct: 1022 GMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGV-VLDSFVS----- 1075

Query: 333  AKPDHYTCMVDLLGRAGKLVEA 354
                  T ++D+  + GK+ EA
Sbjct: 1076 ------TALIDVYSKRGKMEEA 1091



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAMIAGYVENS-WAEDGLKLLRMMIGLGI 194
           +I+ Y K G +  A KLFD  P  N  LVTWNA+++    ++  + DG  L R++    +
Sbjct: 697 LITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVV 756

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
                +L+ V   C   +S    + +H    K  L  D      L+++Y K G + +A  
Sbjct: 757 STTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARV 816

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           LF  +  +DVV WN M+  Y       +A+ LF +    G +PD +T   L
Sbjct: 817 LFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 14/213 (6%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTMI 77
            G+++ A+ +F +IP PD V++  M+S  + N  +  A F + Q    K   D  ++ T++
Sbjct: 1187 GEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV 1246

Query: 78   SGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                    + + R +   + + N        ++++  Y +CG ++ A  LFK    + + 
Sbjct: 1247 KACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIA 1306

Query: 134  AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL------KLLR 187
            +W AMI G  + G    A + F  M ++ ++       G V ++ +  GL          
Sbjct: 1307 SWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIG-VLSACSHSGLVSEAYENFYS 1365

Query: 188  MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
            M    GI P     S ++   S    ++  ++V
Sbjct: 1366 MQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKV 1398



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--Q 260
           S+L      S L LGK+ H  +  S    D      LI+MY KCG L  A KLF      
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 261 RKDVVTWNAMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            +D+VTWNA++S  A H  K      LF  ++   +     T   +   C
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMC 770


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/536 (41%), Positives = 319/536 (59%), Gaps = 21/536 (3%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           DD  A F+ F     +D  SWNTMIS F Q    ++A   F  M     E + V+ ++++
Sbjct: 165 DDSKALFESFVD---RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL 221

Query: 109 SGYIECGQLDKAVELFKVAP-----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
                  +LD   E+          +++    +A++  Y    +V+   ++FD +  + +
Sbjct: 222 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI 281

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSH-LSSLQLGKQVH 221
             WNAMI+GY  N   E  L L   MI + G+ PN ++++SV+  C H L+++  GK++H
Sbjct: 282 ELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIH 341

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
               ++ L  D T  + L+ MY KCG L  + ++F E+  K+V+TWN +I     HGKGE
Sbjct: 342 AYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGE 401

Query: 282 KALRLFDKMKDEG-----MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           +AL LF  M  E       KP+ +TF+ +  AC+H+GL+  G+  F  M +D+G+    D
Sbjct: 402 EALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSD 461

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           HY C+VDLLGRAG+L EA +L+  MP +  +   + +LL ACR+H+ ++L E AA NL +
Sbjct: 462 HYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLH 521

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L P N A  YV L+NIY++   W+    +R +M++  V K PG SWIE    VH+F +GD
Sbjct: 522 LEP-NVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGD 580

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
             HP+   +H  L+ L ++M+  GYVPD    LH V E+ KE LL  HSEKLAIAFG++ 
Sbjct: 581 VSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILN 640

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            P GT IRV KNLRVC DCH ATK+IS I +REIIVRD  RFHHFK+GTCSCGDYW
Sbjct: 641 TPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 140/250 (56%), Gaps = 5/250 (2%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A+++ Y K G+VD ++ LF+    +++V+WN MI+ + ++    + L   R+M+  G+ 
Sbjct: 152 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 211

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACK 254
            +  +++SVL  CSHL  L +GK++H  V + + L +++   + L+ MYC C  +E   +
Sbjct: 212 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR 271

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHA- 312
           +F  I  + +  WNAMISGYA++G  EKAL LF +M K  G+ P++ T  +++ AC H+ 
Sbjct: 272 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSL 331

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
             +  G +     + +  +A+     + +VD+  + G L  +  +  +MP K     +  
Sbjct: 332 AAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNV 389

Query: 373 LLSACRVHKR 382
           L+ AC +H +
Sbjct: 390 LIMACGMHGK 399



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 23/182 (12%)

Query: 159 PTKNLVTW-NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           P+++  +W +A+ +    N + E     + M +  G RP+  +  +VL   S L  L+ G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVS-GARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 218 KQVHQLVFKSPLCKDT-TALTPLISMYCKCGDL--------------------EDACKLF 256
           +Q+H    K      + T    L++MY KCG +                    +D+  LF
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
                +D+V+WN MIS ++Q  +  +AL  F  M  EG++ D +T  ++L AC+H   +D
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 317 LG 318
           +G
Sbjct: 232 VG 233


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/614 (38%), Positives = 345/614 (56%), Gaps = 48/614 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSC----ILLNSDD 54
           K  V WNS+L GF  Q G   +A E F  +     +PD VS  +I+++      LLN  +
Sbjct: 224 KDIVTWNSMLTGFI-QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 55  VVA-----AFD------------------------FFQRLPIKDTASWNTMISGFVQKKN 85
           + A      FD                         F  +  KD  SW T  +G+ Q K 
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 86  MAKARDLFLAMP-EKNSVSWSAMISGYIECGQLD-----KAVELFKV-APVKSVVAWTAM 138
             +A +L   +  E   V  + + S  + C  L+     K +  + +   +   V    +
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTI 402

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I  Y + G +D A ++F+ +  K++V+W +MI+ YV N  A   L++   M   G+ P+ 
Sbjct: 403 IDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDY 462

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +L S+L     LS+L+ GK++H  + +     + +    L+ MY +CG +EDA K+F  
Sbjct: 463 VTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTC 522

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            + ++++ W AMIS Y  HG GE A+ LF +MKDE + PD ITF+ALL AC+H+GLV+ G
Sbjct: 523 TKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEG 582

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
             + + M  +Y +   P+HYTC+VDLLGR   L EA  ++K M  +P P ++  LL ACR
Sbjct: 583 KSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACR 642

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +H   ++ E AA  L  L+  N  G YV ++N++AA  +W DV  +R+ MK + + K PG
Sbjct: 643 IHSNKEIGEVAAEKLLELDLDN-PGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPG 701

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKE 497
            SWIEVG  +H F S D++HPE   I++KL ++ +++K   GYV   +F LH VGEE K 
Sbjct: 702 CSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKV 761

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           Q+L  HSE+LAIA+GL+    GTPIRV KNLRVCGDCH     +S   +RE+IVRD +RF
Sbjct: 762 QMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRF 821

Query: 558 HHFKDGTCSCGDYW 571
           HHFKDG CSCGD+W
Sbjct: 822 HHFKDGMCSCGDFW 835



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 183/378 (48%), Gaps = 27/378 (7%)

Query: 53  DDVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAM 107
           +D+  A   F R+ ++ D  SWN++IS +       +A  LF  M +     N+ +++A 
Sbjct: 107 NDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAA 166

Query: 108 I-----SGYIECG-QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +     S +I+ G Q+  A+   K   V  V    A+++ Y++FGK+  A  +F  +  K
Sbjct: 167 LQACEDSSFIKLGMQIHAAI--LKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK 224

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++VTWN+M+ G+++N    + L+    +    ++P+  S+ S+++    L  L  GK++H
Sbjct: 225 DIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIH 284

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
               K+    +      LI MY KC  +    + F  +  KD+++W    +GYAQ+    
Sbjct: 285 AYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYL 344

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-IQYFDSMVNDYGIAAKPDHYTC 340
           +AL L  +++ EGM  D+    ++LLAC   GL  LG I+         G+ + P     
Sbjct: 345 QALELLRQLQMEGMDVDATMIGSILLACR--GLNCLGKIKEIHGYTIRGGL-SDPVLQNT 401

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL---DLAEFAAMNLFNLN 397
           ++D+ G  G +  AV + + +  K    +  T + +C VH  L    L  F++M    L 
Sbjct: 402 IIDVYGECGIIDYAVRIFESIECK--DVVSWTSMISCYVHNGLANKALEVFSSMKETGLE 459

Query: 398 PANAAGCYVQLANIYAAM 415
           P      YV L +I +A+
Sbjct: 460 PD-----YVTLVSILSAV 472



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 134/262 (51%), Gaps = 11/262 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS--GYIE-- 113
           F ++  +   +WN M+ G+V       A +++  M       +S ++  ++   G +E  
Sbjct: 15  FDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDL 74

Query: 114 -CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-LVTWNAMIA 171
            CG     + + K      V    ++++ Y K   ++ A KLFD M  +N +V+WN++I+
Sbjct: 75  FCGAEIHGLAI-KYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIIS 133

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            Y  N    + L L   M+  G+  N  + ++ L  C   S ++LG Q+H  + KS    
Sbjct: 134 AYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL 193

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L++MY + G + +A  +F  ++ KD+VTWN+M++G+ Q+G   +AL  F  ++
Sbjct: 194 DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQ 253

Query: 292 DEGMKPDSITFVALLLACNHAG 313
           +  +KPD ++ +++++A    G
Sbjct: 254 NADLKPDQVSIISIIVASGRLG 275



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 1/180 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G V  AE +FD+M  +++ TWNAM+ GYV N  A   L++ R M  LG+  ++ + 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ- 260
             +L  C  +  L  G ++H L  K         +  L+++Y KC D+  A KLF  +  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           R DVV+WN++IS Y+ +G   +AL LF +M   G+  ++ TF A L AC  +  + LG+Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY KCG + DA  +F ++  + + TWNAM+ GY  +G+   AL ++ +M+  G+  DS T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 302 FVALLLAC 309
           F  LL AC
Sbjct: 61  FPVLLKAC 68


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 309/523 (59%), Gaps = 9/523 (1%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CG 115
             A+D   R   KD  SW TMI+G+ Q     KA   F  M ++   S    ++  +  C 
Sbjct: 503  TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 562

Query: 116  QLDKAVELFKVAPVKSVVAWT-------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             L    E  ++     V  ++       A+++ Y + GK++ +   F++    + + WNA
Sbjct: 563  GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 622

Query: 169  MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
            +++G+ ++   E+ L++   M   GI  N  +  S +   S  ++++ GKQVH ++ K+ 
Sbjct: 623  LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 682

Query: 229  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               +T     LISMY KCG + DA K FLE+  K+ V+WNA+I+ Y++HG G +AL  FD
Sbjct: 683  YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFD 742

Query: 289  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            +M    ++P+ +T V +L AC+H GLVD GI YF+SM ++YG++ KP+HY C+VD+L RA
Sbjct: 743  QMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRA 802

Query: 349  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            G L  A + I++MP KP   ++ TLLSAC VHK +++ EFAA +L  L P ++A  YV L
Sbjct: 803  GLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA-TYVLL 861

Query: 409  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
            +N+YA  KKWD     R  MKE  V K PG SWIEV   +H F  GD+ HP    IHE  
Sbjct: 862  SNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYF 921

Query: 469  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            ++L KR    GYV D    L+ +  E K+ ++  HSEKLAI+FGL+ +P   PI V KNL
Sbjct: 922  QDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNL 981

Query: 529  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            RVC DCH   K++S +  REIIVRD  RFHHF+ G CSC DYW
Sbjct: 982  RVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 177/363 (48%), Gaps = 15/363 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFF 62
           T+ W  +L G  K  G L + ++L  +I +  + S   +   L    L   D+  AF  F
Sbjct: 46  TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVF 103

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAV 121
             +P +   +WN MI     +  + +   LF+ M  +N        SG +E C     A 
Sbjct: 104 DEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAF 163

Query: 122 ELFKVAPVK--------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           ++ +    +        S V    +I  Y + G VDLA ++FD +  K+  +W AMI+G 
Sbjct: 164 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 223

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N    + ++L   M  LGI P   + SSVL  C  + SL++G+Q+H LV K     DT
Sbjct: 224 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 283

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+S+Y   G+L  A  +F  + ++D VT+N +I+G +Q G GEKA+ LF +M  +
Sbjct: 284 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 343

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++PDS T  +L++AC+  G +  G Q   +     G A+       +++L  +   +  
Sbjct: 344 GLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 402

Query: 354 AVD 356
           A+D
Sbjct: 403 ALD 405



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 151/309 (48%), Gaps = 9/309 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A D+F    +++   WN M+  +    ++  +  +F  M  +    N  ++ +++ 
Sbjct: 399 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 458

Query: 110 GYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
             I  G L+       ++ K     +    + +I  Y K GK+D A  +      K++V+
Sbjct: 459 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 518

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W  MIAGY + ++ +  L   R M+  GIR +   L++ +  C+ L +L+ G+Q+H    
Sbjct: 519 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 578

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
            S    D      L+++Y +CG +E++   F + +  D + WNA++SG+ Q G  E+ALR
Sbjct: 579 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 638

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F +M  EG+  ++ TF + + A +    +  G Q   +++   G  ++ +    ++ + 
Sbjct: 639 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMY 697

Query: 346 GRAGKLVEA 354
            + G + +A
Sbjct: 698 AKCGSISDA 706



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  L +KD +SW  MISG  + +  A+A  LF  M          ++S+++S   +   L
Sbjct: 205 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 264

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +   +L     K+          A++S Y   G +  AE +F  M  ++ VT+N +I G 
Sbjct: 265 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 324

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +  + E  ++L + M   G+ P++++L+S+++ CS   +L  G+Q+H    K     + 
Sbjct: 325 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN 384

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+++Y KC D+E A   FLE + ++VV WN M+  Y        + R+F +M+ E
Sbjct: 385 KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE 444

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTC--MVDLLGRAGK 350
            + P+  T+ ++L  C   G ++LG Q    ++  ++ + A    Y C  ++D+  + GK
Sbjct: 445 EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGK 500

Query: 351 LVEAVDLIKKMPFK 364
           L  A D++ +   K
Sbjct: 501 LDTAWDILIRFAGK 514



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 42/326 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           DT   N ++S +    N+  A  +F  M ++++V+++ +I+G  +CG  +KA+ELFK   
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 126 ---VAPVKSVVA--------------------WT-------------AMISGYMKFGKVD 149
              + P  + +A                    +T             A+++ Y K   ++
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A   F E   +N+V WN M+  Y       +  ++ R M    I PN  +  S+L  C 
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L  L+LG+Q+H  + K+    +    + LI MY K G L+ A  + +    KDVV+W  
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 521

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVND 328
           MI+GY Q+   +KAL  F +M D G++ D +     + AC  AGL  L   Q   +    
Sbjct: 522 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACV 579

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEA 354
            G ++       +V L  R GK+ E+
Sbjct: 580 SGFSSDLPFQNALVTLYSRCGKIEES 605



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 141/368 (38%), Gaps = 75/368 (20%)

Query: 193 GIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           GIRPN  +L  +L GC   + SL  G+++H  + K  L  +      L   Y   GDL  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 310
           A K+F E+  + + TWN MI   A      +   LF +M  E + P+  TF  +L AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 311 -----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKP 335
                      HA                        G VDL  + FD      G+  K 
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD------GLRLK- 211

Query: 336 DH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           DH  +  M+  L +     EA+ L   M      P P  F ++LSAC+  + L++ E   
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE--Q 269

Query: 391 MNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           ++   L    ++  YV   L ++Y  +        I  +M + + V           T++
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY--------NTLI 321

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD------LEFALHAVGEEVKEQLLLF 502
           +                EK  EL KRM L G  PD      L  A  A G   + Q L  
Sbjct: 322 NGLSQ--------CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 373

Query: 503 HSEKLAIA 510
           ++ KL  A
Sbjct: 374 YTTKLGFA 381



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 150/389 (38%), Gaps = 90/389 (23%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------- 49
           +KT    N    SVL     + GKL  A ++  +    DVVS+  M++            
Sbjct: 477 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 536

Query: 50  ----------LNSDDV-----VAAFDFFQRLPIKDTASWNTMISGFVQK----------- 83
                     + SD+V     V+A    Q L           +SGF              
Sbjct: 537 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 596

Query: 84  KNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELF---------------- 124
               K  + +LA  +    ++++W+A++SG+ + G  ++A+ +F                
Sbjct: 597 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 656

Query: 125 ---KVAP----------VKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTK 161
              K A           V +V+  T          A+IS Y K G +  AEK F E+ TK
Sbjct: 657 SAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 716

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQV 220
           N V+WNA+I  Y ++ +  + L     MI   +RPN  +L  VL  CSH+  +  G    
Sbjct: 717 NEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 776

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGK 279
             +  +  L         ++ M  + G L  A +   E+  K D + W  ++S    H  
Sbjct: 777 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKN 836

Query: 280 ---GEKALRLFDKMKDEGMKPDSITFVAL 305
              GE A     +++ E    DS T+V L
Sbjct: 837 MEIGEFAAHHLLELEPE----DSATYVLL 861


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 342/628 (54%), Gaps = 78/628 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA----------------------- 57
           G++  A  +F+K+P  DVVS+N ++S  +LN  D  A                       
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSIL 310

Query: 58  -------AFDFFQRLP---IKDTASWNT-----MISGFVQKKNMAKARDLFLAMPEKNSV 102
                  AFD  +++    IK  A  +      ++  + +   +  AR +F  M  ++ +
Sbjct: 311 KACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLI 370

Query: 103 SWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA----------- 137
             +A+ISG    G+ D+A+ LF                A +KS  +  A           
Sbjct: 371 LCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALA 430

Query: 138 --------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                         +I  Y K   +  A ++F+E  + +++   +MI    +    E  +
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           KL   M+  G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D  A   L+  Y
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 550

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +EDA   F  +  + VV+W+AMI G AQHG G++AL LF +M DEG+ P+ IT  
Sbjct: 551 AKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMT 610

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           ++L ACNHAGLVD   +YF+SM   +GI    +HY+CM+DLLGRAGKL +A++L+  MPF
Sbjct: 611 SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +   +I+G LL A RVHK  +L + AA  LF L P   +G +V LAN YA+   W++VA+
Sbjct: 671 QANASIWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASAGMWNEVAK 729

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  MK++N+ K P  SWIEV   VH F  GD+ HP    I+ KL EL   M  AG+VP+
Sbjct: 730 VRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPN 789

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
           ++  LH +    KE LL  HSE+LA+AF L+  P G PIRV KNLR+C DCH A K+IS 
Sbjct: 790 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISK 849

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  REII+RD  RFHHF+DGTCSCGDYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 167/352 (47%), Gaps = 43/352 (12%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI-----SGYIECGQLD 118
           ++  SWN ++S +V+      A  +F  M     +     +S ++     S  IE G+  
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
            A+ + ++   K V    A++  YMK G+VD+A  +F++MP  ++V+WNA+I+G V N  
Sbjct: 225 HAM-VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
               ++LL  M   G+ PN  +LSS+L  CS   +  LG+Q+H  + K+    D      
Sbjct: 284 DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY K   L+DA K+F  +  +D++  NA+ISG +  G+ ++AL LF +++ EG+  +
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403

Query: 299 SITFVALLLACN-----------HAGLVDLGIQYFDSMVND-----------------YG 330
             T  A+L +             HA  V +G  +   +VN                  + 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463

Query: 331 IAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
             +  D   C  M+  L +      A+ L  +M     +P P +  +LL+AC
Sbjct: 464 ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 158/363 (43%), Gaps = 47/363 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           +  V+WN +++ + K   +  DA ++F ++    +       SC++     S ++ A   
Sbjct: 165 RNAVSWNGLMSAYVKN-DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 61  FFQ---RLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 R+   KD  + N ++  +++   +  A  +F  MP+ + VSW+A+ISG +  G 
Sbjct: 224 VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 117 LDKAVELFKVAPVKSVVAWTAMISG------------------------------YMKFG 146
             +A+EL        +V     +S                               Y+  G
Sbjct: 284 DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 147 KVDL---------AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            VD+         A K+FD M  ++L+  NA+I+G       ++ L L   +   G+  N
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++L++VL   + L +    +QVH L  K     D   +  LI  Y KC  L DA ++F 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E    D++   +MI+  +Q   GE A++LF +M  +G++PD     +LL AC      + 
Sbjct: 464 ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 523

Query: 318 GIQ 320
           G Q
Sbjct: 524 GKQ 526



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 6/241 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +IS Y K  +   A + FDE+P    V+W++++  Y  N      ++    M   G+  N
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +L  V+L C  +   +LG QVH +   +    D      L++MY   G ++DA ++F 
Sbjct: 103 EFAL-PVVLKC--VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 258 EI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           E    ++ V+WN ++S Y ++ +   A+++F +M   G++P    F  ++ AC  +  ++
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G Q   +MV   G          +VD+  + G++  A  + +KMP       +  L+S 
Sbjct: 220 AGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 377 C 377
           C
Sbjct: 278 C 278



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +A ++S  L   +   +L  G  +H  + KS      +    LIS Y KC     A + F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFF 60

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            EI     V+W+++++ Y+ +G    A++ F  M+ EG+
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 342/628 (54%), Gaps = 78/628 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA----------------------- 57
           G++  A  +F+K+P  DVVS+N ++S  +LN  D  A                       
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSIL 310

Query: 58  -------AFDFFQRLP---IKDTASWNT-----MISGFVQKKNMAKARDLFLAMPEKNSV 102
                  AFD  +++    IK  A  +      ++  + +   +  AR +F  M  ++ +
Sbjct: 311 KACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLI 370

Query: 103 SWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA----------- 137
             +A+ISG    G+ D+A+ LF                A +KS  +  A           
Sbjct: 371 LCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALA 430

Query: 138 --------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                         +I  Y K   +  A ++F+E  + +++   +MI    +    E  +
Sbjct: 431 VKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAI 490

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           KL   M+  G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D  A   L+  Y
Sbjct: 491 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTY 550

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +EDA   F  +  + VV+W+AMI G AQHG G++AL LF +M DEG+ P+ IT  
Sbjct: 551 AKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMT 610

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           ++L ACNHAGLVD   +YF+SM   +GI    +HY+CM+DLLGRAGKL +A++L+  MPF
Sbjct: 611 SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +   +I+G LL A RVHK  +L + AA  LF L P   +G +V LAN YA+   W++VA+
Sbjct: 671 QANASIWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASAGMWNEVAK 729

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  MK++N+ K P  SWIEV   VH F  GD+ HP    I+ KL EL   M  AG+VP+
Sbjct: 730 VRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPN 789

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
           ++  LH +    KE LL  HSE+LA+AF L+  P G PIRV KNLR+C DCH A K+IS 
Sbjct: 790 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISK 849

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  REII+RD  RFHHF+DGTCSCGDYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 167/352 (47%), Gaps = 43/352 (12%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI-----SGYIECGQLD 118
           ++  SWN ++S +V+      A  +F  M     +     +S ++     S  IE G+  
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
            A+ + ++   K V    A++  YMK G+VD+A  +F++MP  ++V+WNA+I+G V N  
Sbjct: 225 HAM-VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
               ++LL  M   G+ PN  +LSS+L  CS   +  LG+Q+H  + K+    D      
Sbjct: 284 DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY K   L+DA K+F  +  +D++  NA+ISG +  G+ ++AL LF +++ EG+  +
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403

Query: 299 SITFVALLLACN-----------HAGLVDLGIQYFDSMVND-----------------YG 330
             T  A+L +             HA  V +G  +   +VN                  + 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463

Query: 331 IAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
             +  D   C  M+  L +      A+ L  +M     +P P +  +LL+AC
Sbjct: 464 ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 158/363 (43%), Gaps = 47/363 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           +  V+WN +++ + K   +  DA ++F ++    +       SC++     S ++ A   
Sbjct: 165 RNAVSWNGLMSAYVKN-DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 61  FFQ---RLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 R+   KD  + N ++  +++   +  A  +F  MP+ + VSW+A+ISG +  G 
Sbjct: 224 VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 117 LDKAVELFKVAPVKSVVAWTAMISG------------------------------YMKFG 146
             +A+EL        +V     +S                               Y+  G
Sbjct: 284 DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 147 KVDL---------AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            VD+         A K+FD M  ++L+  NA+I+G       ++ L L   +   G+  N
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++L++VL   + L +    +QVH L  K     D   +  LI  Y KC  L DA ++F 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E    D++   +MI+  +Q   GE A++LF +M  +G++PD     +LL AC      + 
Sbjct: 464 ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 523

Query: 318 GIQ 320
           G Q
Sbjct: 524 GKQ 526



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +IS Y K  +   A ++FDE+P    V+W++++  Y  N      ++    M   G+  N
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +L  V+L C  +   +LG QVH +   +    D      L++MY   G ++DA ++F 
Sbjct: 103 EFAL-PVVLKC--VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 258 EI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           E    ++ V+WN ++S Y ++ +   A+++F +M   G++P    F  ++ AC  +  ++
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G Q   +MV   G          +VD+  + G++  A  + +KMP       +  L+S 
Sbjct: 220 AGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 377 C 377
           C
Sbjct: 278 C 278



 Score = 38.5 bits (88), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +A ++S  L   +   +L  G  +H  + KS      +    LIS Y KC     A ++F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVF 60

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            EI     V+W+++++ Y+ +G    A++ F  M+ EG+
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 343/577 (59%), Gaps = 12/577 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFF 62
           K   +W +++ G+ K  G     +EL + +     +V+YN M+S   +N      A +  
Sbjct: 217 KDERSWTTMMTGYVKN-GYFDLGEELLEGMDDNMKLVAYNAMISG-YVNRGFYQEALEMV 274

Query: 63  QRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW---SAMISGYIECG 115
           +R+       D  ++ ++I        +   + +   +  +   S+   ++++S Y +CG
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCG 334

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           + D+A  +F+  P K +V+W A++SGY+  G +  A+ +F EM  KN+++W  MI+G  E
Sbjct: 335 KFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE 394

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           N + E+GLKL   M   G  P   + S  +  C+ L +   G+Q H  + K       +A
Sbjct: 395 NGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSA 454

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              LI+MY KCG +E+A ++F  +   D V+WNA+I+   QHG G +A+ ++++M  +G+
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           +PD IT + +L AC+HAGLVD G +YFDSM   Y I    DHY  ++DLL R+GK  +A 
Sbjct: 515 RPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAE 574

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
            +I+ +PFKP   I+  LLS CRVH  ++L   AA  LF L P +  G Y+ L+N++AA 
Sbjct: 575 SVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEH-DGTYMLLSNMHAAT 633

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            +W++VAR+R  M++  V K    SWIE+ T VH F   D  HPE  +++  L++L K M
Sbjct: 634 GQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693

Query: 476 KLAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           +  GYVPD  F LH V  +  KE +L  HSEK+A+AFGL+K+P GT IR+FKNLR CGDC
Sbjct: 694 RRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDC 753

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H   +++S + +R+II+RD  RFHHF++G CSCG++W
Sbjct: 754 HNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 188/421 (44%), Gaps = 85/421 (20%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISG 79
           +L  A++LFD+I +PD ++   M+S     S D+  A   F++ P+  +DT  +N MI+G
Sbjct: 64  ELNYARQLFDEISEPDKIARTTMVSG-YCASGDITLARGVFEKAPVCMRDTVMYNAMITG 122

Query: 80  FVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           F    +   A +LF  M  +    ++ +++++++G       +K    F  A +KS   +
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY 182

Query: 136 -----TAMISGYMKFGK----VDLAEKLFDEMPTKNLVTWNAMIAGYVENSW-------- 178
                 A++S Y K       +  A K+FDE+  K+  +W  M+ GYV+N +        
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 242

Query: 179 ------------------------AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
                                    ++ L+++R M+  GI  +  +  SV+  C+    L
Sbjct: 243 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 302

Query: 215 QLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           QLGKQVH  V +    +D +      L+S+Y KCG  ++A  +F ++  KD+V+WNA++S
Sbjct: 303 QLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359

Query: 273 GY-------------------------------AQHGKGEKALRLFDKMKDEGMKPDSIT 301
           GY                               A++G GE+ L+LF  MK EG +P    
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F   + +C   G    G QY   ++   G  +       ++ +  + G + EA  + + M
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478

Query: 362 P 362
           P
Sbjct: 479 P 479



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 135/328 (41%), Gaps = 68/328 (20%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  + +   +  AR LF  + E + ++ + M+SGY   G +  A  +F+ APV    
Sbjct: 53  NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPV---- 108

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
                                      ++ V +NAMI G+  N+     + L   M   G
Sbjct: 109 -------------------------CMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 194 IRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGD---- 248
            +P+  + +SVL G + ++  +    Q H    KS     T+    L+S+Y KC      
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSL 203

Query: 249 LEDACKLFLEIQRKDVVTW--------------------------------NAMISGYAQ 276
           L  A K+F EI  KD  +W                                NAMISGY  
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
            G  ++AL +  +M   G++ D  T+ +++ AC  AGL+ LG Q    ++     +   D
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +   +V L  + GK  EA  + +KMP K
Sbjct: 324 N--SLVSLYYKCGKFDEARAIFEKMPAK 349



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           +I  G +P A  L+ ++      S L   +Q+   + +     D  A T ++S YC  GD
Sbjct: 40  IITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP----DKIARTTMVSGYCASGD 95

Query: 249 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           +  A  +F +  +  +D V +NAMI+G++ +  G  A+ LF KMK EG KPD+ TF ++L
Sbjct: 96  ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/476 (43%), Positives = 299/476 (62%), Gaps = 4/476 (0%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           E++    ++++  Y   G ++ A  +F+      VV+WT MI+GY + G    A +LFD 
Sbjct: 149 EQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDR 208

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           MP +NLVTW+ MI+GY  N+  E  ++    +   G+  N + +  V+  C+HL +L +G
Sbjct: 209 MPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMG 268

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           ++ H+ V ++ L  +    T ++ MY +CG++E A  +F ++  KDV+ W A+I+G A H
Sbjct: 269 EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMH 328

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  EKAL  F +M  +G  P  ITF A+L AC+HAG+V+ G++ F+SM  D+G+  + +H
Sbjct: 329 GYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEH 388

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CMVDLLGRAGKL +A   + KMP KP   I+  LL ACR+HK +++ E     L  + 
Sbjct: 389 YGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQ 448

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P   +G YV L+NIYA   KW DV  +R  MK+  V K PGYS IE+   VHEF  GD+ 
Sbjct: 449 P-EYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKT 507

Query: 458 HPELVSIHEKLKE--LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
           HPE+  I E++ E  +  ++KLAGYV +    +  + EE KE  L  HSEKLAIA+G++K
Sbjct: 508 HPEIEKI-ERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMK 566

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +   TPIR+ KNLRVC DCH ATK IS + + E+IVRD  RFHHFK+GTCSC DYW
Sbjct: 567 IRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 141/339 (41%), Gaps = 80/339 (23%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ AA   FQR+   D  SW  MI+G+ +  +   AR+LF  MPE+N V+WS MISGY  
Sbjct: 167 DINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYAR 226

Query: 114 CGQLDKAVELFKVAPVKSVVA--------------------------------------- 134
               +KAVE F+    + VVA                                       
Sbjct: 227 NNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLIL 286

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA++  Y + G V+ A  +F+++P K+++ W A+IAG   + +AE  L     M   G 
Sbjct: 287 GTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGF 346

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P   + ++VL  CSH   ++ G +    +F+S   K    + P +  Y           
Sbjct: 347 VPRDITFTAVLTACSHAGMVERGLE----IFES--MKRDHGVEPRLEHY----------- 389

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                          M+    + GK  KA +   KM    +KP++  + ALL AC     
Sbjct: 390 -------------GCMVDLLGRAGKLRKAEKFVLKMP---VKPNAPIWRALLGACRIHKN 433

Query: 315 VDLGIQYFDSMVNDYGIAAKPD---HYTCMVDLLGRAGK 350
           V++G       V    +  +P+   HY  + ++  RA K
Sbjct: 434 VEVG-----ERVGKILLEMQPEYSGHYVLLSNIYARANK 467



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 143/320 (44%), Gaps = 30/320 (9%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+W  ++AG+ +  G  K A+ELFD++P+ ++V+++ M+S    N +    A + F+ L 
Sbjct: 184 VSWTCMIAGYHRC-GDAKSARELFDRMPERNLVTWSTMISGYARN-NCFEKAVETFEALQ 241

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------NSVSWSAMISGYIEC 114
            +   +  T++ G +       A    LAM EK            N +  +A++  Y  C
Sbjct: 242 AEGVVANETVMVGVISSCAHLGA----LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARC 297

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV----TWNAMI 170
           G ++KAV +F+  P K V+ WTA+I+G    G  + A   F EM  K  V    T+ A++
Sbjct: 298 GNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVL 357

Query: 171 AGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
                    E GL++   M    G+ P       ++        L   ++  + V K P+
Sbjct: 358 TACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKL---RKAEKFVLKMPV 414

Query: 230 CKDT---TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             +     AL     ++      E   K+ LE+Q +    +  + + YA+  K +    +
Sbjct: 415 KPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVM 474

Query: 287 FDKMKDEGM-KPDSITFVAL 305
              MKD+G+ KP   + + +
Sbjct: 475 RQMMKDKGVRKPPGYSLIEI 494



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 32/245 (13%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A ++  ++   NL  +NA+I G   +   E+        +  G+ P+  +   ++  C+ 
Sbjct: 70  AIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQ 129

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L +  +G Q H    K    +D      L+ MY   GD+  A  +F  + R DVV+W  M
Sbjct: 130 LENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCM 189

Query: 271 ISGYAQHGKGEKALRLFDKMKD-------------------------------EGMKPDS 299
           I+GY + G  + A  LFD+M +                               EG+  + 
Sbjct: 190 IAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANE 249

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
              V ++ +C H G + +G +  + ++ +  ++      T +VD+  R G + +AV + +
Sbjct: 250 TVMVGVISSCAHLGALAMGEKAHEYVMRN-KLSLNLILGTAVVDMYARCGNVEKAVMVFE 308

Query: 360 KMPFK 364
           ++P K
Sbjct: 309 QLPEK 313


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/522 (41%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------AMPEKNSVSWSAMISGY 111
            A+  F  + ++D+ SW+ M+ GF +  +       F       A P+  ++ +       
Sbjct: 789  AYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRD 848

Query: 112  IECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            ++  Q+ + +   ++K           A++  Y K  +++ A  LFD+M  ++LVTW  M
Sbjct: 849  LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVM 908

Query: 170  IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
            I GY E   A + L L   M   G+ P+  ++ +V+  C+ L ++   + +   + +   
Sbjct: 909  IGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKF 968

Query: 230  CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              D    T +I M+ KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL LF  
Sbjct: 969  QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 1028

Query: 290  MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
            M   G+ P+ IT V+LL AC+HAGLV+ G+++F  M  DY +     HYTC+VDLLGRAG
Sbjct: 1029 MLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAG 1088

Query: 350  KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            +L EA+ LI  M  +    ++G  L ACR HK + LAE AA +L  L P N  G Y+ L+
Sbjct: 1089 RLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQN-PGHYILLS 1147

Query: 410  NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
            NIYA   +W+DVA+IR  M +  + K+PG++WIEV    H+F  GD  HP    I+E LK
Sbjct: 1148 NIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLK 1207

Query: 470  ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
             L  +++L GYVPD  F LH V EE+K  +L  HSEKLAIAFGLI  P  TPIR+ KNLR
Sbjct: 1208 SLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 1267

Query: 530  VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            VCGDCH   K +SAI  R IIVRD  RFHHFK+G CSCGDYW
Sbjct: 1268 VCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/480 (39%), Positives = 275/480 (57%), Gaps = 9/480 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------AMPEKNSVSWSAMISGY 111
           A+  F  + ++D+ SW+ M+ GF +  +       F       A P+  ++ +       
Sbjct: 113 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 172

Query: 112 IECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           ++  Q+ + +   ++K           A++  Y+K  +++ A  LFD+M  ++LVTW  M
Sbjct: 173 LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVM 232

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY E   A + L L   M   G+ P+  ++ +V+  C+ L ++   + +   + +   
Sbjct: 233 IGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF 292

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D    T +I MY KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL LF  
Sbjct: 293 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 352

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   GM PD IT  +LL AC+HAGLV+ G+++F SM  DY +     HYTC+VDLLGRAG
Sbjct: 353 MLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAG 412

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           +L EA+ LIK M  +    ++G  L ACR HK + LAE AA +L  L   N  G YV L+
Sbjct: 413 RLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQN-PGHYVLLS 471

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYA   +W+DVA+IR  M +  + K PG++WIEV    H+F  GD  HP    I+E LK
Sbjct: 472 NIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLK 531

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
            L  +++L GYVPD  F LH V EE+K  +L  HSEKLAIAFGLI  P  TPIR+ KNLR
Sbjct: 532 SLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 15/266 (5%)

Query: 108 ISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           IS  + C  L +  ++   A V    +++V    +I  Y  +  +D A  LFD M  ++ 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W+ M+ G+ +     +     R +I  G RP+  +L  V+  C  L +LQ+G+ +H +
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V+K  L  D      L+ MY KC ++EDA  LF ++Q +D+VTW  MI GYA+ GK  ++
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 245

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY----- 338
           L LF+KM++EG+ PD +  V ++ AC       LG  +   +++DY I  K         
Sbjct: 246 LVLFEKMREEGVVPDKVAMVTVVFAC-----AKLGAMHKARIIDDY-IQRKKFQLDVILG 299

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFK 364
           T M+D+  + G +  A ++  +M  K
Sbjct: 300 TAMIDMYAKCGCVESAREIFDRMEEK 325



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 11/241 (4%)

Query: 129  VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            +++++    ++  Y  +  +D A  LFD M  ++ V+W+ M+ G+ +     +     R 
Sbjct: 767  LQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 826

Query: 189  MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
            +I  G RP+  +L  V+  C  L +LQ+G+ +H +V+K  L  D      L+ MY KC +
Sbjct: 827  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 249  LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
            +EDA  LF ++  +D+VTW  MI GYA+ G   ++L LFDKM++EG+ PD +  V ++ A
Sbjct: 887  IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946

Query: 309  CNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLGRAGKLVEAVDLIKKMPF 363
            C       LG  +    ++DY I  K         T M+D+  + G +  A ++  +M  
Sbjct: 947  C-----AKLGAMHKARTIDDY-IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 1000

Query: 364  K 364
            K
Sbjct: 1001 K 1001



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 43/278 (15%)

Query: 12   VLAGFAKQRGK---LKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFD-FFQRL 65
            V A      GK   ++DA+ LFDK+ + D+V++ +M+       N+++ +  FD   +  
Sbjct: 873  VCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 932

Query: 66   PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV 121
             + D  +  T++    +   M KAR +   +  K    + +  +AMI  + +CG ++ A 
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 992

Query: 122  ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            E+F     K+V++W+AMI+ Y   G+                                  
Sbjct: 993  EIFDRMEEKNVISWSAMIAAYGYHGQ-------------------------------GRK 1021

Query: 182  GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLI 240
             L L  MM+  GI PN  +L S+L  CSH   ++ G +    +++    + D    T ++
Sbjct: 1022 ALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVV 1081

Query: 241  SMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQH 277
             +  + G L++A KL   +   KD   W A +     H
Sbjct: 1082 DLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 150/365 (41%), Gaps = 92/365 (25%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLP----IKDTASW 73
           +++DA+ LFDK+ + D+V++ +M+     C   N   V+     F+++     + D  + 
Sbjct: 210 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL-----FEKMREEGVVPDKVAM 264

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            T++    +   M KAR +   +  K    + +  +AMI  Y +CG ++ A E+F     
Sbjct: 265 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 324

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           K+V++W+AMI+ Y   G+                                   L L  MM
Sbjct: 325 KNVISWSAMIAAYGYHGQ-------------------------------GRKALDLFPMM 353

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  G+ P+  +L+S+L  CSH   ++ G     L F S + +D +               
Sbjct: 354 LSSGMLPDKITLASLLYACSHAGLVEEG-----LRFFSSMWEDYSV-------------- 394

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALL 306
                      R DV  +  ++    + G+ ++AL+L   M   KDEG+      + A L
Sbjct: 395 -----------RTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGL------WGAFL 437

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK---LVEAVDLIKKMPF 363
            AC     V L  +   S++     +  P HY  + ++   AG+   + +  DL+ +   
Sbjct: 438 GACRTHKDVVLAEKAATSLLELQ--SQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL 495

Query: 364 KPQPA 368
           K  P 
Sbjct: 496 KKTPG 500



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           R N     S L+ C +L+ +   +QVH       + ++      LI  Y     L+DA  
Sbjct: 59  RLNPKFYISALVNCRNLTQV---RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYG 115

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF  +  +D V+W+ M+ G+A+ G        F ++   G +PD+ T   ++ AC     
Sbjct: 116 LFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN 175

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           + +G +    +V  +G+    DH+ C  +VD+  +  ++ +A  L  KM
Sbjct: 176 LQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYVKCREIEDARFLFDKM 221



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           ++L   +QVH       + ++      L+  Y     L+DA  LF  +  +D V+W+ M+
Sbjct: 749 TNLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            G+A+ G        F ++   G +PD+ T   ++ AC     + +G +    +V  +G+
Sbjct: 809 GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGL 867

Query: 332 AAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
               DH+ C  +VD+ G+  ++ +A  L  KM
Sbjct: 868 --DLDHFVCAALVDMYGKCREIEDARFLFDKM 897


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 309/523 (59%), Gaps = 9/523 (1%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CG 115
             A+D   R   KD  SW TMI+G+ Q     KA   F  M ++   S    ++  +  C 
Sbjct: 543  TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602

Query: 116  QLDKAVELFKVAPVKSVVAWT-------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             L    E  ++     V  ++       A+++ Y + GK++ +   F++    + + WNA
Sbjct: 603  GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662

Query: 169  MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
            +++G+ ++   E+ L++   M   GI  N  +  S +   S  ++++ GKQVH ++ K+ 
Sbjct: 663  LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 722

Query: 229  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               +T     LISMY KCG + DA K FLE+  K+ V+WNA+I+ Y++HG G +AL  FD
Sbjct: 723  YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFD 782

Query: 289  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            +M    ++P+ +T V +L AC+H GLVD GI YF+SM ++YG++ KP+HY C+VD+L RA
Sbjct: 783  QMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRA 842

Query: 349  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            G L  A + I++MP KP   ++ TLLSAC VHK +++ EFAA +L  L P ++A  YV L
Sbjct: 843  GLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA-TYVLL 901

Query: 409  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
            +N+YA  KKWD     R  MKE  V K PG SWIEV   +H F  GD+ HP    IHE  
Sbjct: 902  SNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYF 961

Query: 469  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
            ++L KR    GYV D    L+ +  E K+ ++  HSEKLAI+FGL+ +P   PI V KNL
Sbjct: 962  QDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNL 1021

Query: 529  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            RVC DCH   K++S +  REIIVRD  RFHHF+ G CSC DYW
Sbjct: 1022 RVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 177/363 (48%), Gaps = 15/363 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFF 62
           T+ W  +L G  K  G L + ++L  +I +  + S   +   L    L   D+  AF  F
Sbjct: 86  TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVF 143

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAV 121
             +P +   +WN MI     +  + +   LF+ M  +N        SG +E C     A 
Sbjct: 144 DEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAF 203

Query: 122 ELFKVAPVK--------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           ++ +    +        S V    +I  Y + G VDLA ++FD +  K+  +W AMI+G 
Sbjct: 204 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 263

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N    + ++L   M  LGI P   + SSVL  C  + SL++G+Q+H LV K     DT
Sbjct: 264 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 323

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+S+Y   G+L  A  +F  + ++D VT+N +I+G +Q G GEKA+ LF +M  +
Sbjct: 324 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 383

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++PDS T  +L++AC+  G +  G Q   +     G A+       +++L  +   +  
Sbjct: 384 GLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query: 354 AVD 356
           A+D
Sbjct: 443 ALD 445



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 151/309 (48%), Gaps = 9/309 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A D+F    +++   WN M+  +    ++  +  +F  M  +    N  ++ +++ 
Sbjct: 439 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498

Query: 110 GYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
             I  G L+       ++ K     +    + +I  Y K GK+D A  +      K++V+
Sbjct: 499 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 558

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W  MIAGY + ++ +  L   R M+  GIR +   L++ +  C+ L +L+ G+Q+H    
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 618

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
            S    D      L+++Y +CG +E++   F + +  D + WNA++SG+ Q G  E+ALR
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F +M  EG+  ++ TF + + A +    +  G Q   +++   G  ++ +    ++ + 
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMY 737

Query: 346 GRAGKLVEA 354
            + G + +A
Sbjct: 738 AKCGSISDA 746



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  L +KD +SW  MISG  + +  A+A  LF  M          ++S+++S   +   L
Sbjct: 245 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 304

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +   +L     K+          A++S Y   G +  AE +F  M  ++ VT+N +I G 
Sbjct: 305 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 364

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +  + E  ++L + M   G+ P++++L+S+++ CS   +L  G+Q+H    K     + 
Sbjct: 365 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN 424

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+++Y KC D+E A   FLE + ++VV WN M+  Y        + R+F +M+ E
Sbjct: 425 KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE 484

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTC--MVDLLGRAGK 350
            + P+  T+ ++L  C   G ++LG Q    ++  ++ + A    Y C  ++D+  + GK
Sbjct: 485 EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGK 540

Query: 351 LVEAVDLIKKMPFK 364
           L  A D++ +   K
Sbjct: 541 LDTAWDILIRFAGK 554



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 42/326 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           DT   N ++S +    N+  A  +F  M ++++V+++ +I+G  +CG  +KA+ELFK   
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 126 ---VAPVKSVVA--------------------WT-------------AMISGYMKFGKVD 149
              + P  + +A                    +T             A+++ Y K   ++
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A   F E   +N+V WN M+  Y       +  ++ R M    I PN  +  S+L  C 
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L  L+LG+Q+H  + K+    +    + LI MY K G L+ A  + +    KDVV+W  
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVND 328
           MI+GY Q+   +KAL  F +M D G++ D +     + AC  AGL  L   Q   +    
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACV 619

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEA 354
            G ++       +V L  R GK+ E+
Sbjct: 620 SGFSSDLPFQNALVTLYSRCGKIEES 645



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 141/368 (38%), Gaps = 75/368 (20%)

Query: 193 GIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           GIRPN  +L  +L GC   + SL  G+++H  + K  L  +      L   Y   GDL  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 310
           A K+F E+  + + TWN MI   A      +   LF +M  E + P+  TF  +L AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 311 -----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKP 335
                      HA                        G VDL  + FD      G+  K 
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD------GLRLK- 251

Query: 336 DH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           DH  +  M+  L +     EA+ L   M      P P  F ++LSAC+  + L++ E   
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE--Q 309

Query: 391 MNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           ++   L    ++  YV   L ++Y  +        I  +M + + V           T++
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY--------NTLI 361

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD------LEFALHAVGEEVKEQLLLF 502
           +                EK  EL KRM L G  PD      L  A  A G   + Q L  
Sbjct: 362 NGLSQ--------CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413

Query: 503 HSEKLAIA 510
           ++ KL  A
Sbjct: 414 YTTKLGFA 421



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 150/389 (38%), Gaps = 90/389 (23%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------- 49
           +KT    N    SVL     + GKL  A ++  +    DVVS+  M++            
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576

Query: 50  ----------LNSDDV-----VAAFDFFQRLPIKDTASWNTMISGFVQK----------- 83
                     + SD+V     V+A    Q L           +SGF              
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 636

Query: 84  KNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELF---------------- 124
               K  + +LA  +    ++++W+A++SG+ + G  ++A+ +F                
Sbjct: 637 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 696

Query: 125 ---KVAP----------VKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTK 161
              K A           V +V+  T          A+IS Y K G +  AEK F E+ TK
Sbjct: 697 SAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 756

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQV 220
           N V+WNA+I  Y ++ +  + L     MI   +RPN  +L  VL  CSH+  +  G    
Sbjct: 757 NEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGK 279
             +  +  L         ++ M  + G L  A +   E+  K D + W  ++S    H  
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKN 876

Query: 280 ---GEKALRLFDKMKDEGMKPDSITFVAL 305
              GE A     +++ E    DS T+V L
Sbjct: 877 MEIGEFAAHHLLELEPE----DSATYVLL 901


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/639 (37%), Positives = 351/639 (54%), Gaps = 73/639 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDV--- 55
           +  V+WN++++ F+ Q  +  +A   F     + +    V   +++ +C  L   DV   
Sbjct: 260 RDMVSWNTMISSFS-QSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           + A+       I+++   + ++  +   + +   R +F  +  +    W+AMISGY   G
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378

Query: 116 QLDKA----VELFKVA---PVKSVVA---------------------------------W 135
             +KA    +E+ KVA   P  + +A                                  
Sbjct: 379 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQ 438

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM------ 189
            A++  Y + GK+D++E +FD M  ++ V+WN MI GYV +    + L LL  M      
Sbjct: 439 NALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENT 498

Query: 190 -----------IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
                       G   +PNA +L +VL GC+ L+++  GK++H    ++ L  D T  + 
Sbjct: 499 KDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSA 558

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---- 294
           L+ MY KCG L  + ++F E+  K+V+TWN +I     HGKGE+AL LF  M  E     
Sbjct: 559 LVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGG 618

Query: 295 -MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
             KP+ +TF+ +  AC+H+GL+  G+  F  M +D+G+    DHY C+VDLLGRAG+L E
Sbjct: 619 EAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEE 678

Query: 354 AVDLIKKMPFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           A +L+  MP +  +   + +LL ACR+H+ ++L E AA NL +L P N A  YV L+NIY
Sbjct: 679 AYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEP-NVASHYVLLSNIY 737

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           ++   W+    +R +M++  V K PG SWIE    VH+F +GD  HP+   +H  L+ L 
Sbjct: 738 SSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLS 797

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           ++M+  GYVPD    LH V E+ KE LL  HSEKLAIAFG++  P GT IRV KNLRVC 
Sbjct: 798 EKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCN 857

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH ATK+IS I +REIIVRD  RFHHFK+GTCSCGDYW
Sbjct: 858 DCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 164/317 (51%), Gaps = 30/317 (9%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYI 112
           DV   FD   R+  +D  SWN+ I+   + +   +A + F AM  +N  +S   ++S  +
Sbjct: 146 DVCKVFD---RITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVAL 202

Query: 113 ECGQLDKAVEL----------FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            C  L     L           +V   K+     A+++ Y K G+VD ++ LF+    ++
Sbjct: 203 ACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN-NALMAMYAKLGRVDDSKALFESFVDRD 261

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+WN MI+ + ++    + L   R+M+  G+  +  +++SVL  CSHL  L +GK++H 
Sbjct: 262 MVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHA 321

Query: 223 LVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            V + + L +++   + L+ MYC C  +E   ++F  I  + +  WNAMISGYA++G  E
Sbjct: 322 YVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDE 381

Query: 282 KALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA----KPD 336
           KAL LF +M K  G+ P++ T  +++ AC H        + F +  + +G A     K D
Sbjct: 382 KALILFIEMIKVAGLLPNTTTMASVMPACVHC-------EAFSNKESIHGYAVKLGFKED 434

Query: 337 HY--TCMVDLLGRAGKL 351
            Y    ++D+  R GK+
Sbjct: 435 RYVQNALMDMYSRMGKM 451



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 15/266 (5%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAV 121
           P + TASW   +    +  +  +A   ++ M       ++ ++ A++        L K  
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDL-KTG 111

Query: 122 ELFKVAPVK------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           E    A VK      SV     +++ Y K G +    K+FD +  ++ V+WN+ IA    
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS---SLQLGKQVHQLVFKSPLCKD 232
               E  L+  R M    +  ++ +L SV L CS+L     L+LGKQ+H    +    K 
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT 231

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
            T    L++MY K G ++D+  LF     +D+V+WN MIS ++Q  +  +AL  F  M  
Sbjct: 232 FTN-NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 293 EGMKPDSITFVALLLACNHAGLVDLG 318
           EG++ D +T  ++L AC+H   +D+G
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVG 316



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 174/405 (42%), Gaps = 61/405 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KT  N N+++A +AK  G++ D++ LF+     D+VS+N M+S     SD    A  FF+
Sbjct: 230 KTFTN-NALMAMYAKL-GRVDDSKALFESFVDRDMVSWNTMISS-FSQSDRFSEALAFFR 286

Query: 64  RLPIKDTASWNTMISGF------VQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIEC 114
            + ++        I+        +++ ++ K    ++       +NS   SA++  Y  C
Sbjct: 287 LMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNC 346

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
            Q++    +F     + +  W AMISGY + G  + A  LF EM                
Sbjct: 347 RQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEM---------------- 390

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
                   +K+       G+ PN ++++SV+  C H  +    + +H    K    +D  
Sbjct: 391 --------IKV------AGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRY 436

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK--- 291
               L+ MY + G ++ +  +F  ++ +D V+WN MI+GY   G+   AL L  +M+   
Sbjct: 437 VQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRME 496

Query: 292 --------------DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
                             KP++IT + +L  C     +  G +     + +  +A+    
Sbjct: 497 NTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNM-LASDITV 555

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            + +VD+  + G L  +  +  +MP K     +  L+ AC +H +
Sbjct: 556 GSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGK 599


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/504 (43%), Positives = 309/504 (61%), Gaps = 7/504 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VA 127
           N +IS + +   + +A  +   MP ++ VSW+++++G    GQ D A+E+ K      + 
Sbjct: 176 NGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLK 235

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P    +A             V   +++F ++  K+LV+WN MIA Y+ NS   + + +  
Sbjct: 236 PDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFL 295

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    + P+A S++SVL  C  LS+L LG+++H+ V +  L  +      LI MY KCG
Sbjct: 296 QMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCG 355

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            LE A ++F +++ +DVV+W +MIS Y  +GKG  A+ LF +M+D G+ PDSI FV++L 
Sbjct: 356 CLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLS 415

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL+D G  YF  M  +  I  + +H+ CMVDLLGRAG++ EA   IK+MP +P  
Sbjct: 416 ACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNE 475

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LLSACRV+  + +   AA  LF L P   +G YV L+NIYA   +W+DV  +R  
Sbjct: 476 RVWGALLSACRVYSNMIIGLLAADQLFQLCPEQ-SGYYVLLSNIYAKAGRWEDVTTVRSI 534

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MK   + KMPG S  E+   VH F +GD+ HP+   I+E+L     +MK AGYVP+ + A
Sbjct: 535 MKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSA 594

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH V EE KE  L  HSEKLAIAF ++    G+PIR+ KNLRVCGDCH A K IS I  R
Sbjct: 595 LHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGR 654

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EI +RDT RFHHF +G CSCGDYW
Sbjct: 655 EITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y   G+      +FDE+P KN+V +N MI  YV N    D L + + M G GI P+
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL   S    L +G Q+H  V +  L  +      LISMY KCG L +AC++  
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++  +DVV+WN++++G A++G+ + AL +  +M+  G+KPD+ T  +LL A  +  L ++
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 318 GI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT 372
               + F  + N   ++     +  M+ +        EAVD+  +M      P      +
Sbjct: 257 SFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311

Query: 373 LLSAC 377
           +L AC
Sbjct: 312 VLPAC 316



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 167/383 (43%), Gaps = 57/383 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS-DDV 55
           M  +  V+WNS++AG A+  G+  DA E+  ++     +PD  +   +L  +     D+V
Sbjct: 198 MPCRDVVSWNSLVAGCARN-GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMIS 109
               + F +L  K   SWN MI+ ++     A+A D+FL M      P+  S++      
Sbjct: 257 SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316

Query: 110 GYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           G +    L + +  + V      +++   A+I  Y K G ++ A ++FD+M  +++V+W 
Sbjct: 317 GDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWT 376

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +MI+ Y  N    D + L   M  LG+ P++ +  SVL  CSH   L  G+   +L    
Sbjct: 377 SMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKL---- 432

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
                                + + CK+   I+      +  M+    + G+ ++A    
Sbjct: 433 ---------------------MTEECKIVPRIEH-----FVCMVDLLGRAGQVDEAYGFI 466

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M    M+P+   + ALL AC     + +G+   D +        +  +Y  + ++  +
Sbjct: 467 KQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLSNIYAK 521

Query: 348 AGKLVEAVDL--------IKKMP 362
           AG+  +   +        IKKMP
Sbjct: 522 AGRWEDVTTVRSIMKTKGIKKMP 544


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 314/537 (58%), Gaps = 15/537 (2%)

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------ 100
           C + +  D+  A   F+ +P   T  WN +I G     + A A   + AM   N      
Sbjct: 43  CAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRID 102

Query: 101 ----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
               S +  A          +    +L +      V+  T ++  Y K G +DLA+KLFD
Sbjct: 103 ALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFD 162

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           EMP  ++ +WNA+IAG+ + S   D +    RM +   +RPNA ++   LL CS L +L+
Sbjct: 163 EMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALK 222

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGY 274
            G+ VH+ + +  L  +      +I MY KCG ++ A  +F  ++  K ++TWN MI  +
Sbjct: 223 EGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAF 282

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A HG G KAL LF+K+   GM PD+++++A+L ACNHAGLV+ G++ F+SM    G+   
Sbjct: 283 AMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPN 341

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
             HY  MVDLLGRAG+L EA D++  +PF P   ++ TLL ACR +  +++AE A+  L 
Sbjct: 342 IKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLV 400

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            +    + G +V L+N+YAA ++WDDV R+R +M+  +V K PG+S+IE+   +++F +G
Sbjct: 401 EMGFI-SCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNG 459

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D+ H     I+ KL E+  R+K  GY  D    LH +G+E KE  L +HSEKLA+AFGL 
Sbjct: 460 DQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLT 519

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               GTPI+V KNLR+CGDCH   K IS I  REIIVRD TRFH FK+G CSC DYW
Sbjct: 520 CTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 25/275 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++L  +AK  G L  AQ+LFD++PQPD+ S+N +++     S    A    F+R+ +  
Sbjct: 142 TTLLDAYAKI-GDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMT-FKRMKVDG 199

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
                        + N    +   LA  +  ++     +  YI   +LD  V++  V   
Sbjct: 200 NL-----------RPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNV--- 245

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                   +I  Y K G +D A  +F+ M   K+L+TWN MI  +  +      L L   
Sbjct: 246 --------VIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEK 297

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           +   G+ P+A S  +VL  C+H   ++ G ++   + +  L  +      ++ +  + G 
Sbjct: 298 LGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGR 357

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           L++A  +   +   ++V W  ++     +G  E A
Sbjct: 358 LKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMA 392


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/513 (40%), Positives = 312/513 (60%), Gaps = 13/513 (2%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEK----------NSVSWSAMISGYIECGQLD 118
            D ASWN M+ G++   +  KA  L++ M E           N+   +  + G  +  Q+ 
Sbjct: 1073 DLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQ 1132

Query: 119  KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
              V   K      +   + ++  Y+K G+++ A ++F+E+P+ + V W  MI+G VEN  
Sbjct: 1133 AVV--VKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQ 1190

Query: 179  AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             E  L     M    ++P+  + ++++  CS L++L+ G+Q+H    K     D   +T 
Sbjct: 1191 EEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTS 1250

Query: 239  LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            L+ MY KCG++EDA  LF       + +WNAMI G AQHG  E+AL+ F++MK  G+ PD
Sbjct: 1251 LVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPD 1310

Query: 299  SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
             +TF+ +L AC+H+GLV    + F SM   YGI  + +HY+C+VD L RAG++ EA  +I
Sbjct: 1311 RVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVI 1370

Query: 359  KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
              MPF+   +++ TLL+ACRV    +  +  A  L  L P+++A  YV L+N+YAA  +W
Sbjct: 1371 SSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSA-AYVLLSNVYAAANQW 1429

Query: 419  DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            ++VA  R  M++ NV K PG+SW+++   VH F +GDR H E   I+ K++ + KR++  
Sbjct: 1430 ENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREE 1489

Query: 479  GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
            GY+PD +FAL  V EE KE  L +HSEKLAIA+GL+K P  T +RV KNLRVCGDCH A 
Sbjct: 1490 GYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAI 1549

Query: 539  KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KYIS + +RE+++RD  RFHHF+ G CSCGDYW
Sbjct: 1550 KYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 181/406 (44%), Gaps = 59/406 (14%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELF-DKIPQP---DVVSYNIMLS------CILLNSD--D 54
            + WN  L+ F  QRG+  +A + F D I      D +++ +MLS      C+ L      
Sbjct: 872  IAWNKTLSWFL-QRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG 930

Query: 55   VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +V      Q + +      N +I+ +V+  ++++AR +F  M E + VSW+ MISG    
Sbjct: 931  IVVRSGLDQVVSVG-----NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 115  GQLDKAVELF----------------------------------------KVAPVKSVVA 134
            G  + +V +F                                        K   V     
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 135  WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             T +I  Y K GK++ AE LF      +L +WNAM+ GY+ +      L+L  +M   G 
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE 1105

Query: 195  RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            R N  +L++       L  L+ GKQ+  +V K     D   ++ ++ MY KCG++E A +
Sbjct: 1106 RANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARR 1165

Query: 255  LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            +F EI   D V W  MISG  ++G+ E AL  +  M+   ++PD  TF  L+ AC+    
Sbjct: 1166 IFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTA 1225

Query: 315  VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
            ++ G Q   + V     A  P   T +VD+  + G + +A  L K+
Sbjct: 1226 LEQGRQIHANTVK-LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR 1270



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 169/382 (44%), Gaps = 48/382 (12%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDF 61
            V WN++L+  A    K +D   LF  + +  V +    L+     C+L  S    +A + 
Sbjct: 695  VTWNAILSAHAD---KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASP---SAAES 748

Query: 62   FQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 +K    W+  ++G     + +   + +AR LF  M  ++ V W+ M+  Y++ G 
Sbjct: 749  LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 117  LDKAVELFK--------------------VAPVKSVVAWTAMISGYMKFGKVDLAEKLF- 155
              +A+ LF                     V   ++V+ W   +     +G      KLF 
Sbjct: 809  EYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEW--QLKQLKAYGT-----KLFM 861

Query: 156  --DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
              D+    +++ WN  ++ +++     + +     MI   +  +  +   +L   + L+ 
Sbjct: 862  YDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNC 921

Query: 214  LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
            L+LGKQ+H +V +S L +  +    LI+MY K G +  A  +F ++   D+V+WN MISG
Sbjct: 922  LELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISG 981

Query: 274  YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-AGLVDLGIQYFDSMVNDYGIA 332
             A  G  E ++ +F  +   G+ PD  T  ++L AC+   G   L  Q   +     G+ 
Sbjct: 982  CALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQ-IHACAMKAGVV 1040

Query: 333  AKPDHYTCMVDLLGRAGKLVEA 354
                  T ++D+  ++GK+ EA
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEA 1062



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +I+ Y K G +  A KLFD  P  +++LVTWNA+++ + +   A DG  L R++    + 
Sbjct: 667 LITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADK--ARDGFHLFRLLRRSFVS 724

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
               +L+ V   C   +S    + +H    K  L  D      L+++Y K G + +A  L
Sbjct: 725 ATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVL 784

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           F  +  +DVV WN M+  Y   G   +AL LF +    G++PD +T   L
Sbjct: 785 FDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 104/279 (37%), Gaps = 79/279 (28%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF------- 62
            ++ L     + GK+++A+ LF      D+ S+N M+   ++ S D   A   +       
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIV-SGDFPKALRLYILMQESG 1104

Query: 63   ---QRLPIKDTASWNTMISGFVQKKN-----------------------------MAKAR 90
                ++ + + A     + G  Q K                              M  AR
Sbjct: 1105 ERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESAR 1164

Query: 91   DLFLAMPEKNSVSWSAMISGYIECGQLDKAV------ELFKVAP--------VKSVVAWT 136
             +F  +P  + V+W+ MISG +E GQ + A+       L KV P        VK+    T
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLT 1224

Query: 137  AMISG-------------------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            A+  G                         Y K G ++ A  LF    T  + +WNAMI 
Sbjct: 1225 ALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIV 1284

Query: 172  GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
            G  ++  AE+ L+    M   G+ P+  +   VL  CSH
Sbjct: 1285 GLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSH 1323



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 27/175 (15%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--Q 260
           S+L      S L LGK+ H  +  S    D      LI+MY KCG L  A KLF      
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC----------- 309
            +D+VTWNA++S +A   K      LF  ++   +     T   +   C           
Sbjct: 691 SRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            H   V +G+Q+      D  +A        +V++  + G++ EA  L   M  +
Sbjct: 749 LHGYAVKIGLQW------DVFVAG------ALVNIYAKFGRIREARVLFDGMGLR 791


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/500 (41%), Positives = 312/500 (62%), Gaps = 3/500 (0%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            T+IS + +   +  AR +F  MPE N+++W+AM++     G +    ELF + PV++++
Sbjct: 145 TTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLM 204

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W  M++GY K G+++LA ++F EMP K+ V+W+ MI G+  N + E+     R +   G
Sbjct: 205 SWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKG 264

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +RPN +SL+ VL  C+   +L+ GK +H  + KS L    +    L+  Y KCG++  A 
Sbjct: 265 MRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQ 324

Query: 254 KLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +F  I   +++V+W +M++  A HG GE+A+ +F KM++ G++PD I F++LL AC+HA
Sbjct: 325 LVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHA 384

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G +YFD M   Y I    +HY CMVDL GRAG+L +A + + +MP      I+ T
Sbjct: 385 GLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRT 444

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL AC +H  + LAE     L  L+P N++  +V L+N YA   KW D A +R SM E  
Sbjct: 445 LLGACSMHGDVKLAEQVKERLSELDPNNSSD-HVLLSNAYAVAGKWKDAASVRRSMTEQR 503

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAV 491
           + K PG+S IEV  +++ F +G + +      ++KLKE+ +R+++  GYVP++   LH +
Sbjct: 504 ITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDI 563

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE  +  HSEKLA+AFG+ ++  G  IR+ KNLR+C DCH   K IS I K EI+V
Sbjct: 564 EEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVV 623

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD +RFH FKDG CSC DYW
Sbjct: 624 RDRSRFHSFKDGYCSCRDYW 643



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 146/315 (46%), Gaps = 55/315 (17%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A+++FD++P+P+ +++N M++       D+    + F  +P+++  SWN M++G+ +   
Sbjct: 160 ARKVFDEMPEPNAIAWNAMVTACC-RGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGE 218

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----------- 128
           +  AR++FL MP K+ VSWS MI G+   G  ++A   F+      + P           
Sbjct: 219 LELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSA 278

Query: 129 -----------------VKSVVAW-----TAMISGYMKFGKVDLAEKLFDE-MPTKNLVT 165
                             KS +AW      A++  Y K G V +A+ +F+  M  +N+V+
Sbjct: 279 CAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVS 338

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W +M+A    +   E+ + +   M   GIRP+  +  S+L  CSH   ++ G +    + 
Sbjct: 339 WTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKM- 397

Query: 226 KSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
                K    + P       ++ +Y + G L+ A +   ++      + W  ++   + H
Sbjct: 398 -----KGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMH 452

Query: 278 GKGEKALRLFDKMKD 292
           G  + A ++ +++ +
Sbjct: 453 GDVKLAEQVKERLSE 467



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRKDVVTWNA 269
           SL   KQ+H  V K  L  D      L+  +C       L+ AC+LF      DV   N 
Sbjct: 17  SLTTFKQIHANVLKLGLESDPFIAGKLLH-HCAISLSDSLDYACRLFRYTPNPDVFMHNT 75

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQ-YFDSMVN 327
           +I G  +  + + +L  F +M+     P DS +F  ++ A  +   V +GIQ +  ++V 
Sbjct: 76  LIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALV- 134

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
            +G+       T ++ + G  G +  A  +  +MP +P    +  +++AC
Sbjct: 135 -HGLDTHLFVGTTLISMYGECGFVGFARKVFDEMP-EPNAIAWNAMVTAC 182


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 343/611 (56%), Gaps = 50/611 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M VK   +WN++++GF  Q G    A  + +++    V    I ++ IL     SDDV+ 
Sbjct: 182 MPVKDVGSWNAMISGFC-QNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVIN 240

Query: 58  -----------------------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                                              A   F ++ ++D  SWN++I+ + Q
Sbjct: 241 GVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQ 300

Query: 83  KKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVV 133
             + + A   F  M      P+  +V     I   +   ++ +++  F +      K VV
Sbjct: 301 NNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVV 360

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL- 192
              A+++ Y K G ++ A  +FD++P K+ ++WN ++ GY +N  A + +    MM    
Sbjct: 361 IGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECR 420

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              PN  +  S++   SH+ +LQ G ++H  + K+ L  D    T LI +Y KCG LEDA
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF EI R   V WNA+I+    HG+GE+AL+LF  M  E +K D ITFV+LL AC+H+
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD G + FD M  +YGI     HY CMVDLLGRAG L +A +L++ MP +P  +I+G 
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSAC+++   +L   A+  L  ++  N  G YV L+NIYA  +KW+ V ++R   ++  
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSEN-VGYYVLLSNIYANTEKWEGVIKVRSLARDRG 659

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PG+S + VG+    F +G++ HP+   I+++LK L  +MK  GYVPD  F    + 
Sbjct: 660 LRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIE 719

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           E+ KEQ+L  HSE+LAIAFG+I  P  +PIR+FKNLRVCGDCH ATKYIS I +REI+VR
Sbjct: 720 EDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVR 779

Query: 553 DTTRFHHFKDG 563
           D+ RFHHFKDG
Sbjct: 780 DSNRFHHFKDG 790



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 175/340 (51%), Gaps = 22/340 (6%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ 116
           A   F  +P+KD  SWN MISGF Q  N A A  +   M  +     +  ++  +  C Q
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 117 LDKAV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            D  +        + K      V    A+I+ Y KFG++  A+ +FD+M  ++LV+WN++
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP- 228
           IA Y +N+     L+  + M   GIRP+  ++ S+    S LS  ++ + +   V +   
Sbjct: 295 IAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW 354

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L KD      L++MY K G +  A  +F ++ RKD ++WN +++GY Q+G   +A+  ++
Sbjct: 355 LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYN 414

Query: 289 KMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYF-----DSMVNDYGIAAKPDHYTCMV 342
            M++     P+  T+V+++ A +H G +  G++       +S+  D  +A      TC++
Sbjct: 415 MMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA------TCLI 468

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           DL G+ G+L +A+ L  ++P +     +  ++++  +H R
Sbjct: 469 DLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGR 507



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 27/286 (9%)

Query: 40  SYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA------ 89
           S NI+LS  L+N      D+  +   F  +  K+  SWN++IS +V+     +A      
Sbjct: 51  SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 90  ----------RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                     R  F   P       S +    + C        +FK+     V    +++
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCC-------VFKMGFEDDVFVAASLV 163

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y ++G +D+A K+F +MP K++ +WNAMI+G+ +N  A   L +L  M G G++ +  
Sbjct: 164 HLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +++S+L  C+    +  G  +H  V K  L  D      LI+MY K G L+DA  +F ++
Sbjct: 224 TVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQM 283

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           + +D+V+WN++I+ Y Q+     ALR F  M+  G++PD +T V+L
Sbjct: 284 EVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 8/239 (3%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL----KL 185
           +++V  T +I+ Y+  G + L+   FD +  KN+ +WN++I+ YV      + +    +L
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
             M  G  +RP+  +   +L  C    SL  GK+VH  VFK     D      L+ +Y +
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSR 168

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L+ A K+F+++  KDV +WNAMISG+ Q+G    AL + ++MK EG+K D+IT  ++
Sbjct: 169 YGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASI 228

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           L  C  +  V  G+      V  +G+ +       ++++  + G+L +A  +  +M  +
Sbjct: 229 LPVCAQSDDVINGV-LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR 286



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K++H L+      ++    T LI++Y   GD+  +   F  I +K++ +WN++IS Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 278 GKGEKAL----RLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           GK  +A+    +LF       ++PD  TF  +L AC    LVD
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLVD 139


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/542 (40%), Positives = 318/542 (58%), Gaps = 22/542 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q +   +A  LF+ M E      NS + +
Sbjct: 346 NCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMA 405

Query: 106 AMISGYIECGQLDK--AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
            ++   +  G   K  A+  F  K    +      A++  Y + GK+D+A+++F +M  +
Sbjct: 406 GVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR 465

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVLLGCSH 210
           +LVTWN +I GYV +   ED L +L  M  L            ++PN+ +L ++L  C+ 
Sbjct: 466 DLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAA 525

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I  ++V+TWN +
Sbjct: 526 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVI 585

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           +  Y  HG  + A+ +   M  +G+KP+ +TF+++  AC+H+G+V+ G++ F +M  DYG
Sbjct: 586 VMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYG 645

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHKRLDLAEFA 389
           +    DHY C+VDLLGRAG++ EA  LI  +P    +   + +LL ACR+H  L++ E A
Sbjct: 646 VEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIA 705

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A NL  L P N A  YV LANIY++   W     +R +MK   V K PG SWIE G  VH
Sbjct: 706 AQNLIQLEP-NVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVH 764

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           +F +GD  HP+   +   L+ L +RM+  GY+PD    LH V E+ KE LL  HSEKLAI
Sbjct: 765 KFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAI 824

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFG++    GT IRV KNLRVC DCH ATK+IS +  REII+RD  RFHHFK+GTCSCGD
Sbjct: 825 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGD 884

Query: 570 YW 571
           YW
Sbjct: 885 YW 886



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 158/321 (49%), Gaps = 15/321 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYI 112
           D  A +  F R+  ++  SWN++IS     +    A + F  M +++   S   ++S  +
Sbjct: 144 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVAL 203

Query: 113 ECGQ--------LDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            C          + K V  +  +   + S +  T +++ Y K GK+  ++ L      ++
Sbjct: 204 ACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINT-LVAMYGKMGKLASSKVLLGSFEGRD 262

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           LVTWN +++   +N    + L+ LR M+  G+ P+  ++SSVL  CSHL  L+ GK++H 
Sbjct: 263 LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHA 322

Query: 223 LVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
              K+  L +++   + L+ MYC C  +   C++F  +  + +  WNAMI+GYAQ+   E
Sbjct: 323 YALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDE 382

Query: 282 KALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +AL LF +M++  G+  +S T   ++ AC  +G      +     V   G+         
Sbjct: 383 EALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK-EAIHGFVVKRGLDRDRFVQNA 441

Query: 341 MVDLLGRAGKLVEAVDLIKKM 361
           ++D+  R GK+  A  +  KM
Sbjct: 442 LMDMYSRLGKIDIAKRIFGKM 462



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V SV     +++ Y K G      K+FD +  +N V+WN++I+        E  L+  R 
Sbjct: 126 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 185

Query: 189 MIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           M+   + P++ +L SV L CS+      L +GKQVH    +     ++  +  L++MY K
Sbjct: 186 MLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGEL-NSFIINTLVAMYGK 244

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L  +  L    + +D+VTWN ++S   Q+ +  +AL    +M  EG++PD  T  ++
Sbjct: 245 MGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSV 304

Query: 306 LLACNHAGLVDLG 318
           L AC+H  ++  G
Sbjct: 305 LPACSHLEMLRTG 317



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 164/375 (43%), Gaps = 53/375 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++A + K  GKL  ++ L       D+V++N +LS +  N +  + A ++ + + ++ 
Sbjct: 236 NTLVAMYGKM-GKLASSKVLLGSFEGRDLVTWNTVLSSLCQN-EQFLEALEYLREMVLEG 293

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLDKA 120
              D  + ++++      + +   ++L          ++NS   SA++  Y  C Q+   
Sbjct: 294 VEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 353

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     + +  W AMI+GY        A+  +DE                      E
Sbjct: 354 CRVFDGMFDRKIGLWNAMITGY--------AQNEYDE----------------------E 383

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L  + M    G+  N+++++ V+  C    +    + +H  V K  L +D      L+
Sbjct: 384 ALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALM 443

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK--------- 291
            MY + G ++ A ++F +++ +D+VTWN +I+GY    + E AL +  KM+         
Sbjct: 444 DMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASER 503

Query: 292 --DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
                +KP+SIT + +L +C     +  G +     + +  +A      + +VD+  + G
Sbjct: 504 ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCG 562

Query: 350 KLVEAVDLIKKMPFK 364
            L  +  +  ++P +
Sbjct: 563 CLQMSRKVFDQIPIR 577



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 247
           MI LGI+P+  +  ++L   + L  + LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 84  MIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 143

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V++ L
Sbjct: 144 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVAL 203

Query: 308 ACNH----AGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKK 360
           AC++     GL+ +G Q     V+ YG+     +      +V + G+ GKL  +  L+  
Sbjct: 204 ACSNFPMPEGLL-MGKQ-----VHAYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGS 257

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEF 388
              +        L S C+  + L+  E+
Sbjct: 258 FEGRDLVTWNTVLSSLCQNEQFLEALEY 285



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 21/204 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK+  A+ +F K+   D+V++N +++  +  S+    A     ++ I             
Sbjct: 450 GKIDIAKRIFGKMEDRDLVTWNTIITGYVF-SERHEDALLMLHKMQI------------- 495

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWT 136
           +++K   +A  + L   + NS++   ++        L K  E+   A        V   +
Sbjct: 496 LERKASERASRVSL---KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 552

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A++  Y K G + ++ K+FD++P +N++TWN ++  Y  +  ++D + +LRMM+  G++P
Sbjct: 553 ALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKP 612

Query: 197 NASSLSSVLLGCSHLSSLQLGKQV 220
           N  +  SV   CSH   +  G ++
Sbjct: 613 NEVTFISVFAACSHSGMVNEGLKI 636


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 332/590 (56%), Gaps = 42/590 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ--RLPIKDTASWN------ 74
           L  A  LF   P PD   +N ++  + L+   + +   F Q  R P     S+       
Sbjct: 52  LHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALK 111

Query: 75  -------------------------------TMISGFVQKKNMAKARDLFLAMPEKNSVS 103
                                          T+IS + +  +   AR +F  M E N V+
Sbjct: 112 AVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVT 171

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           W+A+++    CG ++ A ++F   PV+++ +W  M++GY K G++ LA ++F EMP ++ 
Sbjct: 172 WNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDE 231

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W+ MI G+  N   ++     R ++   IR N  SL+ VL  C+   + + GK +H  
Sbjct: 232 VSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGF 291

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEK 282
           V K+      +    LI  Y KCG++  A  +F  +   + +V+W ++I+G A HG GE+
Sbjct: 292 VEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEE 351

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A++LF +M++ G++PD ITF++LL AC+H+GLV+ G   F  M N YGI    +HY CMV
Sbjct: 352 AIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMV 411

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DL GRA +L +A + I +MP  P   I+ TLL AC +H  +++AE     L  ++P N +
Sbjct: 412 DLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDN-S 470

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G +V L+N+YA   KW DV+ IR +M E+++ K PG+S IE+  V++ F +G++ +    
Sbjct: 471 GDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTE 530

Query: 463 SIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             HEKL+E+  R++  AGY P L   LH + EE KE  +  HSEKLA AFG+ K+P G  
Sbjct: 531 EAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRI 590

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +R+ KNLRVCGDCH   K IS + + EIIVRD +RFH FKDG CSC DYW
Sbjct: 591 LRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 145/324 (44%), Gaps = 51/324 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G    A+ +FD++ +P+VV++N +L+       DV  A D F  +P+++  SWN M++G+
Sbjct: 152 GDSGSARRVFDEMSEPNVVTWNAVLTAAF-RCGDVEGAQDVFGCMPVRNLTSWNGMLAGY 210

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------------VA 127
            +   +  AR +F  MP ++ VSWS MI G+   G  D+A   F+             + 
Sbjct: 211 AKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLT 270

Query: 128 PVKSVVAW--------------------------TAMISGYMKFGKVDLAEKLFDEMP-T 160
            V S  A                            A+I  Y K G V +A  +F  MP  
Sbjct: 271 GVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVA 330

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG--- 217
           +++V+W ++IAG   +   E+ ++L   M   G+RP+  +  S+L  CSH   ++ G   
Sbjct: 331 RSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGL 390

Query: 218 -KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 275
             ++  L    P  +       ++ +Y +   L+ A +   E+    + + W  ++   +
Sbjct: 391 FSKMKNLYGIEPAIEHYGC---MVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACS 447

Query: 276 QHGKGEKALRLFDKMKDEGMKPDS 299
            HG  E A  +  ++ +  M PD+
Sbjct: 448 IHGNIEMAELVKARLAE--MDPDN 469


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 314/537 (58%), Gaps = 15/537 (2%)

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------ 100
           C + +  D+  A   F+ +P   T  WN +I G     + A A   + AM   N      
Sbjct: 43  CAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRID 102

Query: 101 ----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
               S +  A          +    +L +      V+  T ++  Y K G +DLA+KLFD
Sbjct: 103 ALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFD 162

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           EMP  ++ +WNA+IAG+ + S   D +    RM +   +RPNA ++   LL CS L +L+
Sbjct: 163 EMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALK 222

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGY 274
            G+ VH+ + +  L  +      +I MY KCG ++ A  +F  ++  K ++TWN MI  +
Sbjct: 223 EGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAF 282

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A HG G KAL LF+K+   GM PD+++++A+L ACNHAGLV+ G++ F+SM    G+   
Sbjct: 283 AMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPN 341

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
             HY  MVDLLGRAG+L EA D++  +PF P   ++ TLL ACR +  +++AE A+  L 
Sbjct: 342 IKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLV 400

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            +    + G +V L+N+YAA ++WDDV R+R +M+  +V K PG+S+IE+   +++F +G
Sbjct: 401 EMGFI-SCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNG 459

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D+ H     I+ KL E+  R+K  GY  D    LH +G+E KE  L +HSEKLA+AFGL 
Sbjct: 460 DQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLT 519

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               GTPI+V KNLR+CGDCH   K IS I  REIIVRD TRFH FK+G CSC DYW
Sbjct: 520 CTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 116/284 (40%), Gaps = 43/284 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++L  +AK  G L  AQ+LFD++PQPD+                               
Sbjct: 142 TTLLDAYAKI-GDLDLAQKLFDEMPQPDI------------------------------- 169

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI--SGYIECGQLDKAVELFKVA 127
            ASWN +I+GF Q    A A   F  M    ++  +A+      + C QL    E   V 
Sbjct: 170 -ASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVH 228

Query: 128 PV-------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWA 179
                     +V     +I  Y K G +D A  +F+ M   K+L+TWN MI  +  +   
Sbjct: 229 KYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDG 288

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
              L L   +   G+ P+A S  +VL  C+H   ++ G ++   + +  L  +      +
Sbjct: 289 HKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSM 348

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           + +  + G L++A  +   +   ++V W  ++     +G  E A
Sbjct: 349 VDLLGRAGRLKEAYDIVSSLPFPNMVLWQTLLGACRTYGDVEMA 392


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/624 (37%), Positives = 349/624 (55%), Gaps = 55/624 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL------- 49
           M  +  V WN +L G+  Q G  K+A +LF +  +    PD  S  ++L+  L       
Sbjct: 244 MRERDVVLWNMMLKGYV-QLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDL 302

Query: 50  --------------LNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGF 80
                         L+SD  VA               A + F  +   D  SWN+MIS  
Sbjct: 303 ELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSC 362

Query: 81  VQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG---QLDKAVEL----FKVA 127
            Q     ++ +LF+ +      P+  +++   + +    CG    LD+  ++     K  
Sbjct: 363 AQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAG 422

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
               +   + ++  Y+K G +  A  +F+ +   + V W +MI+G V+N   +  L++  
Sbjct: 423 FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 482

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    + P+  + ++++   S +++L+ G+Q+H  V K     D    T L+ MY KCG
Sbjct: 483 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 542

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++EDA +LF ++  +++  WNAM+ G AQHG  E+A+ LF  MK  G++PD ++F+ +L 
Sbjct: 543 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 602

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL     +Y  SM NDYGI  + +HY+C+VD LGRAG + EA  +I+ MPFK   
Sbjct: 603 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 662

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
           +I   LL ACR+   ++  +  A  LF L P ++A  YV L+NIYAA  +WDDV   R  
Sbjct: 663 SINRALLGACRIQGDVETGKRVAARLFALEPFDSAA-YVLLSNIYAAANRWDDVTDARKM 721

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MK  NV K PG+SWI+V  ++H F   DR HP+   I++K++E+ K ++  GYVPD EF 
Sbjct: 722 MKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFV 781

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           L  V +E KE+ L +HSEKLAIA+GLI  P  T IRV KNLRVCGDCH A KYIS + +R
Sbjct: 782 LLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFER 841

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EI++RD  RFHHF+DG CSCGDYW
Sbjct: 842 EIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 208/494 (42%), Gaps = 100/494 (20%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC-----GQLDKAVELFKV-- 126
           N +++ + +  +++ AR +F   PE++ V+W+A++  Y        G   + + LF++  
Sbjct: 116 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLR 175

Query: 127 -----------APV---------------------KSVVAWTAMISG-----YMKFGKVD 149
                      APV                     K  + W   +SG     Y K G++ 
Sbjct: 176 ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMR 235

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC- 208
            A  LFD M  +++V WN M+ GYV+    ++  +L       G+RP+  S+  +L GC 
Sbjct: 236 DARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCL 295

Query: 209 -SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
            +    L+LGKQVH +  KS L  D +    L++MY K G    A ++F +++  D+++W
Sbjct: 296 WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISW 355

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL-----ACNHAGLVDLGIQY- 321
           N+MIS  AQ    E+++ LF  +  EG+KPD  T  ++ L     AC    L+D G Q  
Sbjct: 356 NSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIH 415

Query: 322 -------FDS-----------------MVND---YGIAAKPDH--YTCMVDLLGRAGKLV 352
                  FDS                 MVN    +   + PD   +T M+      G   
Sbjct: 416 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 475

Query: 353 EAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           +A+ +  +M      P    F TL+ A      L+       N+  L+  +       L 
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 535

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           ++YA     +D  R+    K+ NV  +  ++ + VG   H    G+          E+  
Sbjct: 536 DMYAKCGNIEDAYRL---FKKMNVRNIALWNAMLVGLAQH----GNA---------EEAV 579

Query: 470 ELEKRMKLAGYVPD 483
            L K MK  G  PD
Sbjct: 580 NLFKSMKSHGIEPD 593



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L LGK  H  +  S    D      L++MY KCG L  A ++F     +D+VTWNA++ 
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 273 GYA-----QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            YA       G  ++ L LF  ++        +T   +L  C ++G
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 197


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/615 (37%), Positives = 344/615 (55%), Gaps = 46/615 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           M  +  V+WN+++AG       L+  Q   D      +++ +   + I L  N   +  A
Sbjct: 266 METRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLA 325

Query: 59  FDFFQRLPIKDTASWNTMISG----FVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIE 113
                 +  +   S+  +++     + +   +  A D+FL M   +N VSW+AMI+G I+
Sbjct: 326 RQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQ 385

Query: 114 CGQLDKAVELFK------VAP------------VKSV-----------------VAWTAM 138
            G +  A  LF       VAP            V S+                 +  TA+
Sbjct: 386 NGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTAL 445

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++ Y K    + A  +F  +  K++V+W+AM+  Y +   ++    +   M   G++PN 
Sbjct: 446 LASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNE 505

Query: 199 SSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLF 256
            ++SSV+  C S  + + LG+Q H +  K   C D   ++  L+SMY + G +E A  +F
Sbjct: 506 FTISSVIDACASPTAGVDLGRQFHAISIKHR-CHDALCVSSALVSMYARKGSIESAQCIF 564

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
                +D+V+WN+M+SGYAQHG  +KAL +F +M+ EG++ D +TF+++++ C HAGLV+
Sbjct: 565 ERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVE 624

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G +YFDSM  DYGI    +HY CMVDL  RAGKL EA+ LI+ M F   P ++ TLL A
Sbjct: 625 EGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGA 684

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           C+VHK ++L + AA  L +L P ++A  YV L+NIY+A  KW +   +R  M    V K 
Sbjct: 685 CKVHKNVELGKLAAEKLLSLEPFDSA-TYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKE 743

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
            G SWI++   VH F + D+ HP    I+ KL+ +  ++K  GY PD  FALH V EE K
Sbjct: 744 AGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQK 803

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E +L  HSE+LA+AFGLI  P G P+ +FKNLRVCGDCH   K +S IE REI++RD +R
Sbjct: 804 EAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSR 863

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF  G CSCGD+W
Sbjct: 864 FHHFNSGVCSCGDFW 878



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 136/263 (51%), Gaps = 9/263 (3%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           VV     F+ +P ++  +W ++++G++Q   ++   +LF  M  +    NSV++++++S 
Sbjct: 155 VVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSV 214

Query: 111 YIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
               G +D       +  K     +V    ++++ Y K G V+ A  +F  M T+++V+W
Sbjct: 215 VASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSW 274

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N ++AG V N    + L+L             S+ ++V+  C+++  L L +Q+H  V K
Sbjct: 275 NTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLK 334

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALR 285
                    +T L+  Y K G L +A  +FL +   ++VV+W AMI+G  Q+G    A  
Sbjct: 335 RGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAA 394

Query: 286 LFDKMKDEGMKPDSITFVALLLA 308
           LF +M+++G+ P+  T+  +L A
Sbjct: 395 LFSRMREDGVAPNDFTYSTILTA 417



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 3/243 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T+++  YMK+  V    K+F+ MP +N+VTW +++ GY+++    D ++L   M   G+ 
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN+ + +SVL   +    + LG++VH    K   C        L++MY KCG +E+A  +
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  ++ +D+V+WN +++G   +G   +AL+LF   +         T+  ++  C  A + 
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC--ANIK 320

Query: 316 DLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            LG+ +   S V   G  +  +  T ++D   +AG+L  A+D+   M        +  ++
Sbjct: 321 QLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMI 380

Query: 375 SAC 377
           + C
Sbjct: 381 NGC 383



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 5/197 (2%)

Query: 125 KVAP-VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           ++AP  +S +A +  +           A + FDE+P +N  T +  +  +         L
Sbjct: 30  ELAPKSQSTLACSVPLENQTNLNDATGARQAFDEIPHRN--TLDHALFDHARRGSVHQAL 87

Query: 184 -KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLIS 241
              L +    G R    +L  VL  C  +    LGKQ+H L  +    + D    T L+ 
Sbjct: 88  DHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVD 147

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K   + D  K+F  + +++VVTW ++++GY Q G     + LF +M+ EG+ P+S+T
Sbjct: 148 MYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVT 207

Query: 302 FVALLLACNHAGLVDLG 318
           F ++L      G+VDLG
Sbjct: 208 FASVLSVVASQGMVDLG 224


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/565 (41%), Positives = 325/565 (57%), Gaps = 21/565 (3%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMISG---- 79
           A+ +FD+I +  ++ +N ++ C + N  S D +  F       + D  +   +I G    
Sbjct: 69  ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARL 128

Query: 80  -FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV----- 133
             VQ+        L +       V  S +++ Y +CG++D A ++F     K VV     
Sbjct: 129 GVVQEGKQIHGLALKIGFGSDVFVQGS-LVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 187

Query: 134 ------AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                 +W AMI+GYMK G  D A +LF +MP  +LVTWN MIAGY  N    D +K+  
Sbjct: 188 IDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFF 247

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           MM+ LG RP+ ++L SVL   S L+ L  G+ +H  + K+    D    T LI MY KCG
Sbjct: 248 MMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCG 307

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +E A  +F  IQ+K V  W A+I G   HG    AL LF +M   G+KP++I F+ +L 
Sbjct: 308 CIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLN 367

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           ACNHAGLVD G QYFD M+N+Y I    +HY C+VD+L RAG L EA + I+ MP  P  
Sbjct: 368 ACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 427

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            I+ +LL   R H ++D+ E+AA  +  + P    GCY+ L+N+YAA   W+ V+ +R  
Sbjct: 428 VIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP-ETIGCYILLSNMYAASGMWEKVSHVREM 486

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M +    K PG S +E    +HEF  GD  HP+   I+ K+ E+++++K  G+VPD    
Sbjct: 487 MYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQV 546

Query: 488 LHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
           L  + GE+ KE  L  HSE+LAIAFGLI V  G PIR+ KNLRVC DCH  TK +S I  
Sbjct: 547 LLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYS 606

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REIIVRD  RFHHFK+G+CSC DYW
Sbjct: 607 REIIVRDNCRFHHFKNGSCSCMDYW 631



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 12/158 (7%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           K   +  A  +FD +  ++L+ WN +I  YVEN ++ DG+ L   ++   + P+  +L  
Sbjct: 62  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPC 120

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           V+ GC+ L  +Q GKQ+H L  K     D      L++MY KCG+++ A K+F  +  KD
Sbjct: 121 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 180

Query: 264 V-----------VTWNAMISGYAQHGKGEKALRLFDKM 290
           V           V+WNAMI+GY + G  + AL LF +M
Sbjct: 181 VVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQM 218



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 123/300 (41%), Gaps = 62/300 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A+++FD +   DVV +N ++                       +  SWN MI+G+
Sbjct: 164 GEIDCARKVFDGMIDKDVVLWNSLID---------------------GNLVSWNAMINGY 202

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-------------KVA 127
           ++  +   A +LF  MP  + V+W+ MI+GY   GQ   AV++F              + 
Sbjct: 203 MKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLV 262

Query: 128 PVKSVVA---------W-----------------TAMISGYMKFGKVDLAEKLFDEMPTK 161
            V S V+         W                 T++I  Y K G ++ A  +F  +  K
Sbjct: 263 SVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKK 322

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            +  W A+I G   +  A   L L   M   G++PNA     VL  C+H   +  G+Q  
Sbjct: 323 KVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYF 382

Query: 222 QLVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 279
            ++      + T      L+ + C+ G LE+A      +    + V W +++ G   HGK
Sbjct: 383 DMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 442


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/473 (44%), Positives = 290/473 (61%), Gaps = 2/473 (0%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +S   +A++  Y   G  D A  LF   P   VV  TAM++ Y K G +D A +LFD MP
Sbjct: 164 DSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMP 223

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
           +K+ + WNAMI GY ++    + L+L R M+  G+ P+  ++   L   + L + + G+ 
Sbjct: 224 SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRW 283

Query: 220 VHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           +H  V  S   + +    T LI MYCKCG LEDA  +F  I  KD+V WNAMI+GYA HG
Sbjct: 284 LHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG 343

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
              KAL +F +++ +G+ P  ITF+ LL AC+H+GLVD G Q+F SM  +Y I  K +HY
Sbjct: 344 DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHY 403

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            CMVDLLGRAG + EA  L++ M   P   ++ +LL+ACR+HK + L +  A  L     
Sbjct: 404 GCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGL 463

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
           AN+ G Y+ L+NIYAA+  W++VAR+R  MK + + K PG S IEVG  V+EF +GD  H
Sbjct: 464 ANS-GMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSH 522

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           P    I+  L+++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGLI    
Sbjct: 523 PRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAP 582

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           G  I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 583 GETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 34/251 (13%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y    ++DL   L    P    V + + I  +         L LL  M+G G+ P + +L
Sbjct: 77  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTL 136

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD------------- 248
           SS L  C     L LG+ +H   FK  L  D+   T L+ MY + GD             
Sbjct: 137 SSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPD 193

Query: 249 ------------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                             L+DA +LF  +  KD + WNAMI GY QHG+  +ALRLF  M
Sbjct: 194 PHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWM 253

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
              G+ PD +  +  L A    G  + G      + N   +       T ++D+  + G 
Sbjct: 254 LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGS 313

Query: 351 LVEAVDLIKKM 361
           L +AV +   +
Sbjct: 314 LEDAVSVFNSI 324


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/473 (44%), Positives = 290/473 (61%), Gaps = 2/473 (0%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +S   +A++  Y   G  D A  LF   P   VV  TAM++ Y K G +D A +LFD MP
Sbjct: 163 DSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMP 222

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
           +K+ + WNAMI GY ++    + L+L R M+  G+ P+  ++   L   + L + + G+ 
Sbjct: 223 SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRW 282

Query: 220 VHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           +H  V  S   + +    T LI MYCKCG LEDA  +F  I  KD+V WNAMI+GYA HG
Sbjct: 283 LHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG 342

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
              KAL +F +++ +G+ P  ITF+ LL AC+H+GLVD G Q+F SM  +Y I  K +HY
Sbjct: 343 DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHY 402

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            CMVDLLGRAG + EA  L++ M   P   ++ +LL+ACR+HK + L +  A  L     
Sbjct: 403 GCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGL 462

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
           AN+ G Y+ L+NIYAA+  W++VAR+R  MK + + K PG S IEVG  V+EF +GD  H
Sbjct: 463 ANS-GMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSH 521

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           P    I+  L+++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGLI    
Sbjct: 522 PRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAP 581

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           G  I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 582 GETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 34/251 (13%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y    ++DL   L    P    V + + I  +         L LL  M+G G+ P + +L
Sbjct: 76  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTL 135

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD------------- 248
           SS L  C     L LG+ +H   FK  L  D+   T L+ MY + GD             
Sbjct: 136 SSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPD 192

Query: 249 ------------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                             L+DA +LF  +  KD + WNAMI GY QHG+  +ALRLF  M
Sbjct: 193 PHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWM 252

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
              G+ PD +  +  L A    G  + G      + N   +       T ++D+  + G 
Sbjct: 253 LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGS 312

Query: 351 LVEAVDLIKKM 361
           L +AV +   +
Sbjct: 313 LEDAVSVFNSI 323


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/576 (38%), Positives = 322/576 (55%), Gaps = 43/576 (7%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DV   N ++ C   +  D+ +A   F  +  KD  SWN+MI+GFVQK +  KA +LF  M
Sbjct: 167 DVFVANSLIHC-YFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 225

Query: 97  P----------------------------------EKNSVS-----WSAMISGYIECGQL 117
                                              E+N V+      +AM+  Y +CG +
Sbjct: 226 ESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSI 285

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           + A  LF     K  V WT M+ GY      + A ++ + MP K++V WNA+I+ Y +N 
Sbjct: 286 EDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNG 345

Query: 178 WAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              + L +   + +   I+ N  +L S L  C+ + +L+LG+ +H  + K+ +  +    
Sbjct: 346 KPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVT 405

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           + LI MY KCGDLE A ++F  ++++DV  W+AMI G A HG G +A+ +F KM++  +K
Sbjct: 406 SALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVK 465

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           P+ +TF  +  AC+H GLVD     F  M + YGI  +  HY C+VD+LGR+G L +AV 
Sbjct: 466 PNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVK 525

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            I+ MP  P  +++G LL AC++H  L LAE A   L  L P N  G +V L+NIYA   
Sbjct: 526 FIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRN-DGAHVLLSNIYAKSG 584

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
           KWD+V+ +R  M+   + K PG S IE+  ++HEF SGD  HP    ++ KL E+ +++K
Sbjct: 585 KWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 644

Query: 477 LAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
             GY P++   L  +  EE+KEQ L  HSEKLAI +GLI       IRV KNLR+CGDCH
Sbjct: 645 SNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCH 704

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
              K IS +  REIIVRD  RFHHF++G CSC D+W
Sbjct: 705 AVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 13/233 (5%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS------WAEDGLKLLRMMIGL 192
           I+    F  ++ A K+FDE+P  N  TWN +I  Y          WA      L M+   
Sbjct: 72  IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWA-----FLDMVSSE 126

Query: 193 G-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
               PN  +   ++   + +SSL LG+ +H +  KS +  D      LI  Y  CGDL+ 
Sbjct: 127 SQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDS 186

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           ACK+F  I+ KDVV+WN+MI+G+ Q G  +KAL LF KM+ E +K   +T V +L AC  
Sbjct: 187 ACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAK 246

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              ++ G +   S + +  +         M+D+  + G + +A  L   M  K
Sbjct: 247 IRDLEFG-RRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 298



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 186/443 (41%), Gaps = 93/443 (20%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L+ FA     L+ A+++FD+IPQP+  ++N ++       D V + + F   +  +  
Sbjct: 73  AALSSFAS----LEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQ 128

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
              N     F+ K           A  E +S+S    + G              K A   
Sbjct: 129 CYPNKYTFPFLIK-----------AAAEVSSLSLGQSLHGMA-----------IKSAVGS 166

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V    ++I  Y   G +D A K+F  +  K++V+WN+MI G+V+    +  L+L + M 
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              ++ +  ++  VL  C+ +  L+ G++V   + ++ +  + T    ++ MY KCG +E
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286

Query: 251 DACKLFLEIQ-------------------------------RKDVVTWNAMISGYAQHGK 279
           DA +LF  ++                               +KD+V WNA+IS Y Q+GK
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGK 346

Query: 280 GEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             +AL +F +++  + +K + IT V+ L AC   G ++LG ++  S +   GI       
Sbjct: 347 PNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVT 405

Query: 339 TCMVDLLGRAGKL-------------------------------VEAVDLIKKMP---FK 364
           + ++ +  + G L                                EAVD+  KM     K
Sbjct: 406 SALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVK 465

Query: 365 PQPAIFGTLLSACRVHKRLDLAE 387
           P    F  +  AC     +D AE
Sbjct: 466 PNGVTFTNVFCACSHTGLVDEAE 488


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/648 (37%), Positives = 363/648 (56%), Gaps = 87/648 (13%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP- 66
           ++N+++A +AK+   +  A  LFD+IPQPD+VS+N +++    +  D ++A   F  +  
Sbjct: 76  SFNALIAAYAKE-SLIHVAHHLFDQIPQPDLVSFNTLINA-YADRGDTLSALSLFGEMRE 133

Query: 67  ---IKDTASWNTMI-------------------SGF---VQKKN-----------MAKAR 90
              + D  +++ +I                   SGF   V  KN           + +A 
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAE 193

Query: 91  DLFLAMPE--KNSVSWSAMISGYIECGQLDKA-------------VELFKVAPVKSVVAW 135
            +F  M E  ++ VSW++MI  Y +  +  KA             +++F +A V +  + 
Sbjct: 194 MVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSC 253

Query: 136 TAMISGYMKF-----------------GKVDL----------AEKLFDEMPTKNLVTWNA 168
              +SG ++F                 G +D+          + K+F+E+   +LV WN 
Sbjct: 254 VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNT 313

Query: 169 MIAGYVEN-SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           MI+GY +N   + + L+  R M   G  P+  S    +  CS+LSS   GKQ H L  KS
Sbjct: 314 MISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKS 373

Query: 228 PLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
            +  +  ++   L++MY KCG+L+DA KLF  + + + VT N++I+GYAQHG G ++L L
Sbjct: 374 EIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNL 433

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F++M    + P SIT V++L AC H G V+ G +YF+ M + +GI  + +HY+CM+DLLG
Sbjct: 434 FEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLG 493

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAGKL EA  LI  MPF P  A +  LL ACR +  ++LAE AA     L P NA   Y+
Sbjct: 494 RAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVP-YI 552

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            LA++Y+A +KW++ ARIR  M++  + K PG SWIE+   VH F + D  HP +  IH 
Sbjct: 553 MLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHM 612

Query: 467 KLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
            L E+  +MK AGYVPD+ +A       GE+ KE +L  HSEKLA+AFGL+    G P+ 
Sbjct: 613 YLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLL 672

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           V KNLR+CGDCH A K++SAI +R+I VRD  RFH F+DG CSCGDYW
Sbjct: 673 VVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 46/379 (12%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +C  L  A   F      +V ++ A+I+ Y K   + +A  LFD++P  +LV++N +I
Sbjct: 53  YSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLI 112

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
             Y +       L L   M  +G+  +  + S V+  C   + + L +Q+H L F S   
Sbjct: 113 NAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSSGFD 170

Query: 231 KDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              +    L++ Y K G LE+A  +F  +  + +D V+WN+MI  Y QH +G KAL L+ 
Sbjct: 171 SYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYR 230

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            M   G + D  T  ++L   +    +  G+Q+    +   G        + ++D+  + 
Sbjct: 231 DMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKT-GFNKNRHVGSGLIDMYAKC 289

Query: 349 GK---------------------------------LVEAVDLIKKMP---FKPQPAIFGT 372
           G                                   VEA++  ++M    + P    F  
Sbjct: 290 GAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVC 349

Query: 373 LLSAC-RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            +SAC  +       +F A+ + +  P+N       L  +Y+      D  ++   M ++
Sbjct: 350 AISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQH 409

Query: 432 NVVKM----PGYSWIEVGT 446
           N V +     GY+   +GT
Sbjct: 410 NTVTLNSIIAGYAQHGIGT 428



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 135/306 (44%), Gaps = 50/306 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDVVAAFDF 61
           V WN++++G+++ +    +A E F ++ +    PD  S+   +S C  L+S      F  
Sbjct: 309 VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHA 368

Query: 62  F---QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                 +P    +  N +++ + +  N+  AR LF  MP+ N+V+ +++I+GY + G   
Sbjct: 369 LAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGT 428

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +++ LF+     S+                          PT   +T  ++++       
Sbjct: 429 ESLNLFEQMLAASIA-------------------------PTS--ITLVSILSACAHTGR 461

Query: 179 AEDGLKLLRMMIGL-GIRPNASSLSSV--LLGCSHLSSLQLGK--QVHQLVFKSPLCKDT 233
            E+G K   MM  + GI P A   S +  LLG       + GK  +  +L+   P    +
Sbjct: 462 VEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLG-------RAGKLSEAERLIDTMPFSPGS 514

Query: 234 TALTPLISMYCKCGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            A   L+    K G++   E A   FL+++  + V +  + S Y+   K E+A R+   M
Sbjct: 515 AAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLM 574

Query: 291 KDEGMK 296
           +D G++
Sbjct: 575 RDRGIR 580



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 32/148 (21%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           S   +L  C     L  GK +H +  KS +   T      I +Y KC  L  A   F + 
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 260 QRKDVVTWNAMISGYAQH-------------------------------GKGEKALRLFD 288
              +V ++NA+I+ YA+                                G    AL LF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 289 KMKDEGMKPDSITFVALLLA-CNHAGLV 315
           +M++ G+  D  TF  ++ A CNH GL+
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLI 157


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/565 (40%), Positives = 330/565 (58%), Gaps = 16/565 (2%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G+ KDA ++FD     DVVSY  +++    +   + +A   F  +P+KD  SWN +IS
Sbjct: 150 KNGRWKDAHKVFDGSSHRDVVSYTALITG-YASRGYIESAQKMFDEIPVKDVVSWNAIIS 208

Query: 79  GFVQKKNMAKARDLFLAMPEKN---------SVSWSAMISGYIECG-QLDKAVELFKVAP 128
           G+    N  +A DLF  M + N         +V  +   SG I+ G Q+   ++   +  
Sbjct: 209 GYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGS 268

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
              +V   A+I  Y K G+V+ A  LF  +  K++++WN MI GY   +  ++ L L + 
Sbjct: 269 NLKIV--NALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQE 326

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKC 246
           M+  G  PN  ++ S+L  C+ L ++  G+ +H  + K    +   ++  T LI MY KC
Sbjct: 327 MLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKC 386

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           GD+E A ++F  +  + +   NAMI G+A HG+   A  +F +M+  G++PD ITFV LL
Sbjct: 387 GDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLL 446

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H+G++DLG + F SM  +Y I  K +HY CM+DLLG  G   EA ++I  M  +P 
Sbjct: 447 SACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPD 506

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             I+ +LL AC++H  ++L E  A  L  + P N  G YV L+NIYA   +W++VA IR 
Sbjct: 507 GVIWCSLLKACKMHGNVELGESFAQKLIKIEPENP-GSYVLLSNIYATAGRWNEVANIRA 565

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD   
Sbjct: 566 LLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSE 625

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            L  + EE K+  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS I K
Sbjct: 626 VLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK 685

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REII RD TRFHHF+DG CSC DYW
Sbjct: 686 REIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 211/431 (48%), Gaps = 43/431 (9%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-----------------AFDFFQRLPIK 68
           A  +F+ I +P+++ +N M     L+SD V A                  F F  +   K
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115

Query: 69  -DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
              +     I G V K  +    DL++          +++IS Y++ G+   A ++F  +
Sbjct: 116 LKVSKEGQQIHGHVLK--LGYELDLYVH---------TSLISMYVKNGRWKDAHKVFDGS 164

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             + VV++TA+I+GY   G ++ A+K+FDE+P K++V+WNA+I+GY +    ++ L L +
Sbjct: 165 SHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFK 224

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+   ++P+ S++ +V+  C+   S+QLG+QVH  +    L  +   +  LI +Y KCG
Sbjct: 225 EMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCG 284

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++E AC LF  +  KDV++WN MI GY      ++AL LF +M   G  P+ +T +++L 
Sbjct: 285 EVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILP 344

Query: 308 ACNHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           AC   G +D G     Y D  +   G+       T ++D+  + G +  A  +   M  +
Sbjct: 345 ACAQLGAIDFGRWIHVYIDKRIK--GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHR 402

Query: 365 PQPA----IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
              A    IFG  +   R +   D+  F+ M    + P +    +V L +  +     D 
Sbjct: 403 TLSACNAMIFGFAMHG-RANAAFDI--FSRMRKNGIEPDDIT--FVGLLSACSHSGMLDL 457

Query: 421 VARIRLSMKEN 431
             RI  SM +N
Sbjct: 458 GRRIFRSMTQN 468



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
            F  +  A  +F+ +   NL+ WN M  G+  +S     +KL   MI LG+ PN+ +   
Sbjct: 49  NFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPF 108

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD--------------- 248
           +L  C+ L   + G+Q+H  V K     D    T LISMY K G                
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168

Query: 249 ----------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                           +E A K+F EI  KDVV+WNA+ISGYA  G  ++AL LF +M  
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK 228

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             +KPD  T V ++ AC  +G + LG Q   S ++D+G+ +       ++DL  + G++ 
Sbjct: 229 TNVKPDESTMVTVVSACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEVE 287

Query: 353 EAVDLIKKMPFK 364
            A  L + +  K
Sbjct: 288 TACGLFQGLSNK 299


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/611 (36%), Positives = 344/611 (56%), Gaps = 49/611 (8%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +WN++LA  +K +    D  +LF ++ +    V S+N++ +        +      F  L
Sbjct: 80  SWNTILASHSKNKC-FYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSL 138

Query: 66  PIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            IK     D      +++ + +  ++ +A  +F  +P KNSV W  MI G++   +    
Sbjct: 139 AIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGV 198

Query: 121 VELFK-----------------VAPVKSVVA-----------------------WTAMIS 140
            ELF                  +    +V A                        T+++ 
Sbjct: 199 FELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVD 258

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            YMK G +D A KLF+E+  +++V W+A+IAG+  N  A + + + R M+   + PN+ +
Sbjct: 259 MYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVT 318

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            +S++L CS L SL+ G+ VH  + ++ +  D    T  I MY KCG +  A ++F +I 
Sbjct: 319 FASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP 378

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K+V +W+ MI+G+  HG   +AL LF +M+     P+S+TFV++L AC+H+G ++ G  
Sbjct: 379 EKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWS 438

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +F SM  DYGI    +HY CMVDLLGRAGK+ EA+  I  MP +P  + +G LL ACR+H
Sbjct: 439 HFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIH 498

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           +R +LAE  A  L  L  ++ +G YV L+NIYA +  W+ V + RL M E  + K+ G++
Sbjct: 499 RRAELAEEVAKKLLPLE-SDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFT 557

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
            IE+   ++ F S DR   +   I      L++RM+  GYVPDL F LH V +EVK+++L
Sbjct: 558 SIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVL 617

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLAI FGL+    G PIR+ KN+RVCGDCH A+K+IS I +R+II+RD  RFHH 
Sbjct: 618 CGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHV 677

Query: 561 KDGTCSCGDYW 571
           +DG CSCGDYW
Sbjct: 678 QDGVCSCGDYW 688



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 153/312 (49%), Gaps = 10/312 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLD-- 118
           F  +  ++  SWNT+++   + K       LF  M  E   V    ++     C  L   
Sbjct: 70  FNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF 129

Query: 119 KAVELFKVAPVK-----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +  +LF    +K           A+++ Y + G ++ A K+F+E+P KN V W  MI G+
Sbjct: 130 QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGH 189

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           +  S      +L   M   G   +   +  ++  C ++ + + GK  H L  K       
Sbjct: 190 LNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSN 249

Query: 234 TAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             L T L+ MY KCG L+ A KLF EI  +DVV W+A+I+G+A++G+  +++ +F +M  
Sbjct: 250 FFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLA 309

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           + + P+S+TF +++LAC+  G +  G      M+ + G+     +YT  +D+  + G +V
Sbjct: 310 DSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIV 368

Query: 353 EAVDLIKKMPFK 364
            A  +  ++P K
Sbjct: 369 TAYRVFCQIPEK 380



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 110/235 (46%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           +S++    +   Y++ G + +A K F+ +  +NL +WN ++A + +N    D L+L + M
Sbjct: 45  RSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRM 104

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  G   ++ +L   +  C  LS  Q  K  H L  K  L  D      L+++Y + G L
Sbjct: 105 LKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSL 164

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E+A K+F E+  K+ V W  MI G+    +      LF +M+  G + D      L+ AC
Sbjct: 165 EEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQAC 224

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            +      G  +    +    I +     T +VD+  + G L  A+ L +++ ++
Sbjct: 225 GNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYR 279



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 51/221 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCILLNS---- 52
           ++ +  V W++++AGFA+    L+      Q L D +    V   +I+L+C  L S    
Sbjct: 276 ISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQG 335

Query: 53  -----------------------------DDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                                          +V A+  F ++P K+  SW+TMI+GF   
Sbjct: 336 RSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMH 395

Query: 84  KNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFK-------VAPVKSV 132
              A+A +LF  M       NSV++ +++S     G++++    FK       + PV+  
Sbjct: 396 GLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEE- 454

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
             +  M+    + GK+D A    + MPT+     W A++  
Sbjct: 455 -HYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGA 494


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 333/597 (55%), Gaps = 45/597 (7%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNT 75
           Q   LKDA+ +FDK+PQP VV+ + ++S              F+Q   +    +  SWN 
Sbjct: 121 QFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNG 180

Query: 76  MISGFVQKKNMAKARDLFLAM------PEKNSVSW------------------------- 104
           MISGF +  +   A  +F  M      P+  SVS                          
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQG 240

Query: 105 --------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
                   SA+I  Y +C    +   +F       V A  A+++G  + G VD A ++F 
Sbjct: 241 LGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFK 300

Query: 157 EMPTK--NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           +      N+V+W +MIA   +N    + L+L R M   G++PN+ ++  +L  C ++++L
Sbjct: 301 QFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAAL 360

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             GK  H    ++ +  D    + LI MY KCG +  +   F  +  +++V+WN++++GY
Sbjct: 361 LHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGY 420

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A HGK  +A+ +F+ M+  G KPD ++F  +L AC   GL + G  YFDSM  ++G+ A+
Sbjct: 421 AMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEAR 480

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY+CMV LLGR+G+L EA  +IK+MPF+P   ++G LLS+CRVH R+DL E AA  +F
Sbjct: 481 MEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVF 540

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L P N  G Y+ L+NIYA+   W +V  +R  M+   + K PGYSWIE+   VH   +G
Sbjct: 541 ELEPRN-PGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAG 599

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  HP++  I EKL +L   MK +GYVP  +F L  V E+ KEQ+L  HSEKLA+  GL+
Sbjct: 600 DSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLL 659

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               G P++V KNLR+C DCH   K+IS  EKREI VRDT RFH FK G CSCGDYW
Sbjct: 660 NTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 171/362 (47%), Gaps = 68/362 (18%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D+   ++++  +VQ  ++  AR++F  +P+   V+ SA+IS +   G++ +  ELF    
Sbjct: 108 DSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELF---- 163

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                           +   DL  +L       NLV+WN MI+G+  +    D + + + 
Sbjct: 164 ----------------YQTRDLGVEL-------NLVSWNGMISGFNRSGSYLDAVLMFQN 200

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-- 246
           M   G++P+ +S+SSVL     L    +G Q+H  V K  L  D   ++ LI MY KC  
Sbjct: 201 MHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCAC 260

Query: 247 -----------------------------GDLEDACKLFLEIQRKD--VVTWNAMISGYA 275
                                        G +++A ++F + +  D  VV+W +MI+  +
Sbjct: 261 ASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCS 320

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQYFDSMVNDYGIAAK 334
           Q+GK  +AL LF +M+ EG+KP+S+T   LL AC N A L+     +  S+ N  GI   
Sbjct: 321 QNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN--GIFND 378

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
               + ++D+  + G+++ +      MP +   + + +L++   +H +     F A+N+F
Sbjct: 379 VYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVS-WNSLMAGYAMHGK----TFEAINIF 433

Query: 395 NL 396
            L
Sbjct: 434 EL 435



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 40/216 (18%)

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           +++   M+  GI P++  L +V+  C+ LS+LQ GKQ+H     S L  D+  L+ L+ M
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 243 YCKCGDLEDACKLFLEIQRKDVVT-----------------------------------W 267
           Y +   L+DA  +F ++ +  VVT                                   W
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           N MISG+ + G    A+ +F  M  EG+KPD  +  ++L A     +  +GIQ    ++ 
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 328 DYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 361
                  PD +  + ++D+ G+     E   +  +M
Sbjct: 239 Q---GLGPDKFVVSALIDMYGKCACASEMSGVFNEM 271


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 324/576 (56%), Gaps = 43/576 (7%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DV   N ++ C   +  D+ +A   F  +  KD  SWN+MI+GFVQK +  KA +LF  M
Sbjct: 165 DVFVANSLIHC-YFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223

Query: 97  P----------------------------------EKNSVS-----WSAMISGYIECGQL 117
                                              E+N V+      +AM+  Y +CG +
Sbjct: 224 ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSI 283

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           + A  LF     K  V WT M+ GY      + A ++ + MP K++V WNA+I+ Y +N 
Sbjct: 284 EDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNG 343

Query: 178 WAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              + L +   + +   ++ N  +L S L  C+ + +L+LG+ +H  + K  +  +    
Sbjct: 344 KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVT 403

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           + LI MY KCGDLE + ++F  ++++DV  W+AMI G A HG G +A+ +F KM++  +K
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           P+ +TF  +  AC+H GLVD     F  M ++YGI  +  HY C+VD+LGR+G L +AV 
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVK 523

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            I+ MP  P  +++G LL AC++H  L+LAE A   L  L P N  G +V L+NIYA + 
Sbjct: 524 FIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN-DGAHVLLSNIYAKLG 582

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
           KW++V+ +R  M+   + K PG S IE+  ++HEF SGD  HP    ++ KL E+ +++K
Sbjct: 583 KWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 642

Query: 477 LAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
             GY P++   L  +  EE+KEQ L  HSEKLAI +GLI       IRV KNLRVCGDCH
Sbjct: 643 SNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCH 702

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
              K IS +  REIIVRD  RFHHF++G CSC D+W
Sbjct: 703 SVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 45/384 (11%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGY------VENSWAEDGLKLLRMMIGLGIRPNA 198
           F  ++ A K+FDE+P  N   WN +I  Y      V + WA      L M+      PN 
Sbjct: 77  FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWA-----FLDMVSESQCYPNK 131

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +   ++   + +SSL LG+ +H +  KS +  D      LI  Y  CGDL+ ACK+F  
Sbjct: 132 YTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 191

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           I+ KDVV+WN+MI+G+ Q G  +KAL LF KM+ E +K   +T V +L AC     ++ G
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            Q   S + +  +         M+D+  + G + +A  L   M  K     + T+L    
Sbjct: 252 RQVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYA 309

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV------ARIRLSMKENN 432
           + +  +    AA  + N  P      +  L + Y    K ++        +++ +MK N 
Sbjct: 310 ISEDYE----AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 365

Query: 433 VVKMPGYS------------WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           +  +   S            WI      H  R    V   L+ ++ K  +LEK  ++   
Sbjct: 366 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 425

Query: 481 VPDLE----------FALHAVGEE 494
           V   +           A+H  G E
Sbjct: 426 VEKRDVFVWSAMIGGLAMHGCGNE 449



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 188/443 (42%), Gaps = 94/443 (21%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L+ FA     L+ A+++FD+IP+P+  ++N ++       D V++ + F         
Sbjct: 72  AALSSFAS----LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLD------- 120

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                M+S      N      L  A  E +S+S    + G              K A   
Sbjct: 121 -----MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA-----------VKSAVGS 164

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V    ++I  Y   G +D A K+F  +  K++V+WN+MI G+V+    +  L+L + M 
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              ++ +  ++  VL  C+ + +L+ G+QV   + ++ +  + T    ++ MY KCG +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284

Query: 251 DACKLFLEIQ-------------------------------RKDVVTWNAMISGYAQHGK 279
           DA +LF  ++                               +KD+V WNA+IS Y Q+GK
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344

Query: 280 GEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             +AL +F +++  + MK + IT V+ L AC   G ++LG ++  S +  +GI       
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVT 403

Query: 339 TCMVDLLGRAGKLV-------------------------------EAVDLIKKMP---FK 364
           + ++ +  + G L                                EAVD+  KM     K
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463

Query: 365 PQPAIFGTLLSACRVHKRLDLAE 387
           P    F  +  AC     +D AE
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAE 486


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 332/565 (58%), Gaps = 11/565 (1%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTA 71
           F K    L  A  +F +I  P++  +N+++ C    ++    AF F+ ++       D  
Sbjct: 62  FHKPTNLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPS-KAFGFYTQMLKSRIWPDNI 120

Query: 72  SWNTMISGFVQKKNMA---KARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVELFKVA 127
           ++  +I    + + +    +     +    +N V   ++++  Y  CG +  A  +F   
Sbjct: 121 TFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQM 180

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P + VV+WT+M++GY K G V+ A ++FDEMP +NL TW+ MI GY +N+  E  + L  
Sbjct: 181 PFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 240

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           +M   G+  N + + SV+  C+HL +L+ G++ H+ V KS +  +    T L+ MY +CG
Sbjct: 241 LMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCG 300

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++E A ++F E+  KD ++W+++I G A HG   KA+  F +M   G  P  IT  A+L 
Sbjct: 301 EIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLS 360

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+H GLVD G++ +++M  DYGI  + +HY C+VD+LGRAGKL EA + I KMP KP  
Sbjct: 361 ACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNA 420

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            I G LL AC+++K  ++AE     L  + P + +G YV L+NIYA   +W+ +  +R  
Sbjct: 421 PILGALLGACKIYKNTEVAERVGNMLIEVKPEH-SGYYVLLSNIYACAGQWEKLESLRDI 479

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           MKE  V K PG+S IE+   +++F  G D+ HPE+  I    +E+  +++L GY  +   
Sbjct: 480 MKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGD 539

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
           A   V EE KE  +  HSEKLAIA+G++K   GT IR+ KNLRVC DCH ATK IS +  
Sbjct: 540 AFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYG 599

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           RE IVRD  RFHHF++G CSC DYW
Sbjct: 600 REFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 41/230 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W S++AG+ K  G ++DA+E+FD++P                          
Sbjct: 180 MPFRDVVSWTSMVAGYCKC-GMVEDAREMFDEMPH------------------------- 213

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQL-- 117
                  ++  +W+ MI+G+ +     KA DLF  M  +  V+  + M+S    C  L  
Sbjct: 214 -------RNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGA 266

Query: 118 ----DKAVE-LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
               ++A E + K     +++  TA++  Y + G+++ A ++F+E+P K+ ++W+++I G
Sbjct: 267 LEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKG 326

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
              +  A   +     M+ LG  P   +L++VL  CSH   +  G ++++
Sbjct: 327 LAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYE 376


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 328/605 (54%), Gaps = 79/605 (13%)

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKN 100
           L+ + L  D ++ A   F R+P +D   W+ MI+G+ +   + +A++LF  M     E N
Sbjct: 145 LTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPN 204

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVA------PVKSVVAW------------------- 135
            VSW+ M++G+   G  D+AV +F++       P  S V+                    
Sbjct: 205 LVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHG 264

Query: 136 --------------TAMISGYMKFGKVDLAEKLFDEMPTK-------------------- 161
                         +AM+  Y K G V    ++FDE+                       
Sbjct: 265 YVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDT 324

Query: 162 ---------------NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
                          N+VTW ++IA   +N    + L+L R M   G+ PNA ++ S++ 
Sbjct: 325 ALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIP 384

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C ++S+L  GK++H    +  +  D    + LI MY KCG ++ A + F ++   ++V+
Sbjct: 385 ACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVS 444

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WNA++ GYA HGK ++ + +F  M   G KPD +TF  +L AC   GL + G + ++SM 
Sbjct: 445 WNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMS 504

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
            ++GI  K +HY C+V LL R GKL EA  +IK+MPF+P   ++G LLS+CRVH  L L 
Sbjct: 505 EEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLG 564

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           E AA  LF L P N  G Y+ L+NIYA+   WD+  RIR  MK   + K PGYSWIEVG 
Sbjct: 565 EIAAEKLFFLEPTN-PGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGH 623

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            VH   +GD+ HP++  I EKL +L  +MK +GY+P   F L  V E+ KEQ+L  HSEK
Sbjct: 624 KVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEK 683

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LA+  GL+    G P++V KNLR+C DCH   K IS +E REI VRDT RFHHFKDG CS
Sbjct: 684 LAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCS 743

Query: 567 CGDYW 571
           CGD+W
Sbjct: 744 CGDFW 748



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 153/269 (56%), Gaps = 11/269 (4%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           IK  AS   +  G  Q+ +   A   FL     +S+  S++   Y++C ++  A +LF  
Sbjct: 111 IKSCASLRALDPG--QQLHAFAAASGFLT----DSIVASSLTHMYLKCDRILDARKLFDR 164

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT----KNLVTWNAMIAGYVENSWAEDG 182
            P + VV W+AMI+GY + G V+ A++LF EM +     NLV+WN M+AG+  N + ++ 
Sbjct: 165 MPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEA 224

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           + + RMM+  G  P+ S++S VL     L  + +G QVH  V K  L  D   ++ ++ M
Sbjct: 225 VGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDM 284

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG +++  ++F E++  ++ + NA ++G +++G  + AL +F+K KD+ M+ + +T+
Sbjct: 285 YGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTW 344

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            +++ +C+  G     ++ F  M   YG+
Sbjct: 345 TSIIASCSQNGKDLEALELFRDM-QAYGV 372



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 3/194 (1%)

Query: 136 TAMISGY---MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           T+++S Y   +      L+  L   +P   L +++++I  +  +      L     +  L
Sbjct: 39  TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPL 98

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            + P+A  L S +  C+ L +L  G+Q+H     S    D+   + L  MY KC  + DA
Sbjct: 99  RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDA 158

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            KLF  +  +DVV W+AMI+GY++ G  E+A  LF +M+  G++P+ +++  +L    + 
Sbjct: 159 RKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNN 218

Query: 313 GLVDLGIQYFDSMV 326
           G  D  +  F  M+
Sbjct: 219 GFYDEAVGMFRMML 232


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 340/571 (59%), Gaps = 36/571 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+V+  + +  G +++A+++FD + +   DVVS+NIMLS  + N D    A   +QR+ +
Sbjct: 199 NAVMTMYGRC-GAVEEARKVFDAMDEALRDVVSWNIMLSTYVHN-DRGKDAIQLYQRMQL 256

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
           + D  ++ +++S     +++   R L   +     EKN +  +A++S Y +CG   +A  
Sbjct: 257 RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 316

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F     +S+++WT +IS Y++   V  A  LF +M                        
Sbjct: 317 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQM------------------------ 352

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L+L +      ++P+A +  ++L  C+ +S+L+ GK V +      L  D    T ++++
Sbjct: 353 LELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNL 412

Query: 243 YCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           Y KCG++E+A ++F  +  R DV  WNAMI+ YAQ G+  +AL+LF +M+ EG++PDS +
Sbjct: 413 YGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFS 472

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           FV++LLAC+H GL D G  YF SM  +Y  +     H+ C+ DLLGR G+L EA + ++K
Sbjct: 473 FVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEK 532

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           +P KP    + +LL+ACR H+ L  A+  A  L  L P  A G YV L+NIYA ++KW  
Sbjct: 533 LPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATG-YVALSNIYAELQKWHA 591

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA++R  M E  V K  G S IE+G  +H+F +GD  HP    I E+L +L  +MK  GY
Sbjct: 592 VAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGY 651

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPD +  LH V E+ KE+LL  HSE+LAIA GLI  PLGTP+RV KNLRVC DCH ATK 
Sbjct: 652 VPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKL 711

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I  R+I+VRD TRFH FKDG CSC DYW
Sbjct: 712 ISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 158/367 (43%), Gaps = 44/367 (11%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+  FD +  +NL +W  ++A +  +  +++ L+ L  M   G+RP+A +  + L  C  
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNA 269
             SL+ G ++HQ+V  S L  D      L++MY KCG L  A ++F +++R ++V++W+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           M   +A HG   +ALR F  M   G+K      V +L AC+   LV  G +   S +   
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RMIHSCIALS 189

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVE---------------------------------AVD 356
           G  ++      ++ + GR G + E                                 A+ 
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
           L ++M  +P    + +LLSAC   + + L       + N            L ++YA   
Sbjct: 250 LYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCG 309

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
              +   +   M++ +++     SW    T++  +    R+  E   + +++ ELEK   
Sbjct: 310 SHTEARAVFDKMEQRSII-----SWT---TIISAYVR-RRLVAEACHLFQQMLELEKNGS 360

Query: 477 LAGYVPD 483
                PD
Sbjct: 361 SQRVKPD 367



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY  C    DA   F  ++++++ +W  +++ +A  G+ ++ LR  ++M+ +G++PD++T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+  L +C     +  GI+    MV D  +   P     ++++  + G L  A  +  KM
Sbjct: 61  FITALGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/509 (43%), Positives = 308/509 (60%), Gaps = 9/509 (1%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D    N +I  + +  +M     +F  M E+N VSW+++I GY    +  +AV LF   
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM 223

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             K +V   A++  YMK G +D A++LFDE   +NLV +N +++ Y     A + L +L 
Sbjct: 224 LNKVMV--NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILD 281

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-----VHQLVFKSPLCKDTTALTPLISM 242
            M+  G RP+  ++ S +   + L  L  GK      VH  + K+ +  D    T L+ M
Sbjct: 282 EMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDM 341

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           + +CGD + A ++F ++  +DV  W A I   A  G GE A  LF++M  +G+KPD + F
Sbjct: 342 FARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLF 401

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V +L AC+H G V+ G+  F S++ D+GI+ + +HY CMVDLLGRAG L EA DLIK MP
Sbjct: 402 VQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMP 460

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +P   ++G+LL+ACRVHK +++A +AA  +  L P  A G +V L+NIYA+  KW DVA
Sbjct: 461 MEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRA-GVHVLLSNIYASAGKWTDVA 519

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           R+RL+++E  V K+PG S ++V  V+HEF SGD  HPE+  I   L+E+  R   AG++P
Sbjct: 520 RVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIP 579

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           DL   L  V E+ KE LL  HSEKLAIAFGLI      PIRV KNLR+C DCH   K  S
Sbjct: 580 DLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMAS 639

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I  REIIVRD  RFH F+ G CSC DYW
Sbjct: 640 IIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 18/242 (7%)

Query: 148 VDLAEKLF-----DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           +D A K F     D      L   N++I GY       + + L   M+ LG+ PN  +  
Sbjct: 76  LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL GC+ +++   G QVH  V K  L +D      LI  Y +CG ++   K+F  +  +
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +VV+W ++I GYA+  + ++A+ LF +M ++ M       V + + C   G +D   + F
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVN---ALVDMYMKC---GAIDAAKRLF 249

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHK 381
           D  V+   +      Y  ++    R G   EA+ ++ +M  + P+P    T+LSA     
Sbjct: 250 DECVDRNLVL-----YNTILSNYARQGLAREALAILDEMLQQGPRPDRV-TMLSAISASA 303

Query: 382 RL 383
           +L
Sbjct: 304 QL 305



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 132/313 (42%), Gaps = 32/313 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +  V+W S++ G+A+   + K+A  LF ++    +V+    L  + +    + AA  
Sbjct: 192 MSERNVVSWTSLICGYARG-DRPKEAVSLFFEMLNKVMVN---ALVDMYMKCGAIDAAKR 247

Query: 61  FFQRLPIKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            F     ++   +NT++S + +    ++ +A   ++    P  + V+   M+S      Q
Sbjct: 248 LFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVT---MLSAISASAQ 304

Query: 117 LDKAVELF--KVAPVKSVVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTK 161
           L   V+LF  KV     V  +             TA++  + + G    A ++F++M  +
Sbjct: 305 L---VDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTER 361

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++  W A I         E    L   M+  G++P+      VL  CSH   ++ G  + 
Sbjct: 362 DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF 421

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGK 279
            L+    +         ++ +  + G L +A  L   + ++  DVV W ++++    H  
Sbjct: 422 SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV-WGSLLAACRVHKN 480

Query: 280 GEKALRLFDKMKD 292
            E A    +++ +
Sbjct: 481 VEMATYAAERINE 493


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/476 (43%), Positives = 300/476 (63%), Gaps = 6/476 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKLFD 156
           E ++V W+AMI GY+  G+++ A ELF+  P +S+++ W AMISG+ + G V++A + FD
Sbjct: 201 EVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFD 260

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
           EM  ++ ++W+AMI GY++     + L++   M    IRP    L SVL  C++L +L  
Sbjct: 261 EMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQ 320

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+ +H    ++ +  D    T L+ MY KCG ++ A ++F ++  K+V +WNAMI G A 
Sbjct: 321 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 380

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG+ E A+ LF KM    + P+ ITFV +L AC H GLV  G+  F+SM  +YG+  + +
Sbjct: 381 HGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIE 437

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY C+VDLLGRAG L EA  ++  +P +P PA++G LL ACR H  ++L E     L  L
Sbjct: 438 HYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL 497

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT-VVHEFRSGD 455
            P N+ G Y  L+NIYA   +W++V  +R  MKE  +   PG S I++G   VH+F  GD
Sbjct: 498 EPQNS-GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGD 556

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
             HP++  I++ L ++++R+++ GY PD    L  + EE KE  +  HSEKLAI FGLI 
Sbjct: 557 GSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLIN 616

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
              GT IR+ KNLRVC DCH ATK IS +  REIIVRD  R+HHF++G CSC D+W
Sbjct: 617 TSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 12/229 (5%)

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           ++FD +   N+  WN MI   +EN+     + L   M+    RPN  +  +VL  CS   
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 151

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMI 271
            +  G QVH  + K  L  D   L+  I MY   G L +A ++  +   + D V WNAMI
Sbjct: 152 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 211

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            GY + G+ E A  LF+ M D  M     T+ A++   +  G+V++  ++FD M     I
Sbjct: 212 DGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKERDEI 268

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
           +     ++ M+D   + G  +EA+++  +M     +P+  +  ++LSAC
Sbjct: 269 S-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 312



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-----DLEDACKLFLEI 259
           LL     +SL   KQ H L+ ++   +D+     L+  Y           E + ++F  +
Sbjct: 38  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 97

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           ++ +V  WN MI    ++ +  KA+ L+ +M     +P+  T+ A+L AC+ AG+V  G+
Sbjct: 98  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGV 157

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           Q    +V  +G+       +  + +    G+LVEA
Sbjct: 158 QVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEA 191



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 50/267 (18%), Positives = 107/267 (40%), Gaps = 64/267 (23%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQ 116
           A++ F+++  K+ +SWN MI G         A DLF  M    N +++  +++     G 
Sbjct: 356 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGL 415

Query: 117 LDKAVELFK-------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           + K + +F        V P   +  +  ++    + G +  AEK+   +PT+        
Sbjct: 416 VQKGLTIFNSMRKEYGVEP--QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE-------- 465

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SP 228
                                     P  +   ++L  C    +++LG++V +++ +  P
Sbjct: 466 --------------------------PTPAVWGALLGACRKHGNVELGERVGKILLELEP 499

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW-------------NAMISGYA 275
             +++   T L ++Y K G  E+  ++   ++ + + T              +  I G  
Sbjct: 500 --QNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDG 557

Query: 276 QHGKGEKALRLFDKMKD----EGMKPD 298
            H + +   ++ DK+K+    EG +PD
Sbjct: 558 SHPQVKDIYQMLDKVKERLQMEGYEPD 584


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/565 (39%), Positives = 344/565 (60%), Gaps = 24/565 (4%)

Query: 16  FAKQRGKLK-DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN 74
           F ++ G+ +  A E+FD++ +    + ++    +L  S+D V     F+ +P KD  SWN
Sbjct: 156 FLEESGRQRLGAGEVFDEMTER---TRSVRTVSVL--SEDSVR--KIFEMMPEKDLVSWN 208

Query: 75  TMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           T+I+G  +    ++ +   R++  A  + +S + S+++    E   + +  E+   +  +
Sbjct: 209 TIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ 268

Query: 131 SVVA----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            + A     +++I  Y K  +V  + ++F  +  ++ ++WN++IAG V+N   ++GL+  
Sbjct: 269 GLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFF 328

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R M+   I+P + S SS++  C+HL++L LGKQ+H  + ++   ++    + L+ MY KC
Sbjct: 329 RQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKC 388

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++  A ++F  ++ +D+V+W AMI G A HG+   A+ LF++M+ EG+K       A+L
Sbjct: 389 GNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVL 441

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLVD   +YF+SM  D+GIA   +HY  + DLLGRAG+L EA D I  M   P 
Sbjct: 442 TACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPT 501

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            +I+ TLLSACRVHK +D+AE  A  +  ++P N  G Y+ LANIY+A ++W + A+ R 
Sbjct: 502 GSIWATLLSACRVHKNIDMAEKVANRILEVDPNNT-GAYILLANIYSAARRWKEAAKWRA 560

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           SM+   + K P  SWIEV   V+ F +GD  HP    I E ++ L + M+  GYVPD   
Sbjct: 561 SMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSE 620

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
             H V EE K+ L+  HSE+LAI FG+I  P G  IRV KNLRVC DCH ATK+IS I  
Sbjct: 621 VHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVG 680

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI+VRD +RFHHFK+GTCSCGDYW
Sbjct: 681 REIVVRDNSRFHHFKNGTCSCGDYW 705



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 136/346 (39%), Gaps = 75/346 (21%)

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           +LF+ +     + W ++I  Y  +      L     M+  G+ P+ +   SVL  C+ L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC------------------- 253
            L LG+ +H  + +  L  D      L++MY K   LE++                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 254 -------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
                        K+F  +  KD+V+WN +I+G A++G  E+ LR+  +M    +KPDS 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 301 TFVALL---------------LACNHAGLVDLGIQYFDSMVNDYG----IAAKPDHYTCM 341
           T  ++L                 C+    +D  I    S+++ Y     +A     +T +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 342 VDLLG-----------RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC----RVHKRL 383
            +  G           + G   E +   ++M     KP+   F +++ AC     +H   
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 384 DLAEFAAMNLFNLN---PANAAGCYVQLANIYAAMKKWDDVARIRL 426
            L  +   N F+ N    ++    Y +  NI  A + +D   R+RL
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD---RMRL 403



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 54/256 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---- 53
           M  K  V+WN+++AG A+       L+  +E+     +PD  + + +L  I  N D    
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRG 258

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +      Q L   D    +++I  + +   +A +  +F  + E++ +SW+++I+G ++
Sbjct: 259 KEIHGCSIRQGLD-ADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQ 317

Query: 114 CGQLDKAVELFK---VAPVK------------------------------------SVVA 134
            G  D+ +  F+   +A +K                                    ++  
Sbjct: 318 NGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 377

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            ++++  Y K G +  A+++FD M  +++V+W AMI G   +  A D ++L   M   GI
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI 437

Query: 195 RPNASSLSSVLLGCSH 210
           +       +VL  CSH
Sbjct: 438 K-------AVLTACSH 446



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y     L D+ +LF  I     + W ++I  Y  HG   ++L  F  M   G+ PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 302 FVALLLACNHAGLVDLGI 319
           F ++L +C  A L+DL +
Sbjct: 109 FPSVLKSC--ALLMDLNL 124


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/596 (38%), Positives = 336/596 (56%), Gaps = 46/596 (7%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF----------DFFQRLPI 67
           RG+   A+ +FD IP+ +V+ YN+M+   + N   DD +  F          D +    +
Sbjct: 80  RGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCV 139

Query: 68  KDTASW--------------------------NTMISGFVQKKNMAKARDLFLAMPEKNS 101
               S                           N +I+ + +   + +AR +   M  K+ 
Sbjct: 140 LKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDV 199

Query: 102 VSWSAMISGYIECGQLDKAVEL------FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
           VSW++M++GY +  Q D A+++       +  P    +A             V   E++F
Sbjct: 200 VSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMF 259

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
             +  K+LV+WN MI+ Y++NS     + L   M    + P+A + +SVL  C  LS+L 
Sbjct: 260 MNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALL 319

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           LG+++H+ V +  LC +      LI MY +CG LEDA ++F  ++ +DV +W ++IS Y 
Sbjct: 320 LGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYG 379

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
             G+G  A+ LF +M++ G  PDSI FVA+L AC+H+GL++ G  YF  M +DY I    
Sbjct: 380 MTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPII 439

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           +H+ C+VDLLGR+G++ EA ++IK+MP KP   ++G LLS+CRV+  +D+   AA  L  
Sbjct: 440 EHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQ 499

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L P   +G YV L+NIYA   +W +V  IR  MK   + KMPG S +E+   VH F +GD
Sbjct: 500 LAP-EESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGD 558

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
             HP+   I+E+L  L  +MK  GYVP  + ALH V EE KE  L  HSEKLAI F ++ 
Sbjct: 559 TYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILN 618

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               +PIR+ KNLRVCGDCH A K IS I +REI++RDT RFHHFKDG CSCGDYW
Sbjct: 619 TQ-ESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 98/171 (57%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y   G+  LA  +FD +P +N++ +N MI  Y+ N   +D L + R M+  G  P+
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS   +L++G Q+H  VFK  L  +      LI++Y KCG L +A  +  
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           E+Q KDVV+WN+M++GYAQ+ + + AL +  +M     KPD+ T  +LL A
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPA 243



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 176/390 (45%), Gaps = 62/390 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQEL---FDKIPQ-PDVVSYNIMLSCIL-LNSDDV 55
           M  K  V+WNS++AG+A Q  +  DA ++    D + Q PD  +   +L  +   +S++V
Sbjct: 194 MQSKDVVSWNSMVAGYA-QNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           +   + F  L  K   SWN MIS +++     K+ DL+L M     E ++++ ++++   
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRA- 311

Query: 112 IECGQLD---------KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             CG L          + VE  K+ P  +++   ++I  Y + G ++ A+++FD M  ++
Sbjct: 312 --CGDLSALLLGRRIHEYVERKKLCP--NMLLENSLIDMYARCGCLEDAKRVFDRMKFRD 367

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           + +W ++I+ Y       + + L   M   G  P++ +  ++L  CSH   L  GK    
Sbjct: 368 VASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGK---- 423

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
             FK     D   +TP+I  +        AC                ++    + G+ ++
Sbjct: 424 FYFKQ--MTDDYKITPIIEHF--------AC----------------LVDLLGRSGRVDE 457

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A  +  +M    MKP+   + ALL +C     +D+GI   D ++       +  +Y  + 
Sbjct: 458 AYNIIKQMP---MKPNERVWGALLSSCRVYSNMDIGILAADKLLQ--LAPEESGYYVLLS 512

Query: 343 DLLGRAGKLVEAV---DLIKKMPFKPQPAI 369
           ++  +AG+  E      L+K+   +  P I
Sbjct: 513 NIYAKAGRWTEVTAIRSLMKRRRIRKMPGI 542



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K VH  VF     ++ +    L+  Y   G+   A  +F  I  ++V+ +N MI  Y  +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
              + AL +F  M   G  PD  T+  +L AC+ +  + +G+Q     V   G+      
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQ-LHGAVFKVGLDLNLFV 170

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              ++ L G+ G L EA  ++ +M  K
Sbjct: 171 GNGLIALYGKCGCLPEARCVLDEMQSK 197


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/472 (44%), Positives = 291/472 (61%), Gaps = 4/472 (0%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           S++A+++ Y+  G+ D A  LF          VV+WT M+ G  + G VD A KLFD MP
Sbjct: 129 SFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMP 188

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +NL++WNAMI+GYV+     D L++   M  LGI  N    +S ++ C+    L  G++
Sbjct: 189 ERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGRE 248

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           VH+ V +S +  D    T ++ MYCKCG +E+A  +F  +  K + +WN MI G A HG+
Sbjct: 249 VHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGR 308

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
            + A+ LF +M+ E + PD +T V +L AC H G+V  G  YF+ +V  YGI  K +HY 
Sbjct: 309 CKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYG 368

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
           CMVDL GRAG L EA  +I  MP +P   + G L  AC++H+ LDL E     +  L+P 
Sbjct: 369 CMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQ 428

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
           N +G YV LAN+ A+  +W DVA++R  M E NV K  G S IE+   V EF+ G   H 
Sbjct: 429 N-SGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHA 487

Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 519
           +   I   +K++ ++++L GY+PD    LH + EE KE  L +HSEKLAIAFGL++   G
Sbjct: 488 QEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPG 547

Query: 520 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             +R+ KNLRVC DCH ATK+IS + +REI+VRD  RFHHFKDGTCSC DYW
Sbjct: 548 DTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 47/253 (18%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN---------- 197
           V  A +L    P  +   +N + A    +  A      L +M+ L + P+          
Sbjct: 50  VPYAARLLAHHPDPHPALFNPLFASLPPHHAA----AFLALMLSLPLHPDHFTLPRLLPA 105

Query: 198 ---------------------ASSLSSVLL-----GCSHLSSLQLGKQVHQLVFKSPLCK 231
                                A S +++L      G + L+S   G         SP   
Sbjct: 106 APLPLAAQLHALLLKLNFHSHAHSFNALLAAYLANGRADLASRLFGS------CSSPGDL 159

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D  + T ++   C+ G ++DA KLF  +  +++++WNAMISGY + G+   AL +FD+M+
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++ +     + ++AC  AG++  G +     V   GI       T +VD+  + G +
Sbjct: 220 ALGIEGNGFVAASAVVACTGAGVLARG-REVHRWVEQSGITMDEKLATAVVDMYCKCGSV 278

Query: 352 VEAVDLIKKMPFK 364
            EA  + K +P K
Sbjct: 279 EEAWHVFKVLPTK 291


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/504 (43%), Positives = 316/504 (62%), Gaps = 8/504 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVA 127
           N +I+ + + K++ +A+ +   +P ++ VSW++M+S Y + G+ + A+EL        + 
Sbjct: 159 NGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLK 218

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P    +A             V   +++F ++  K++++WN MIA YV NS  ++ + L  
Sbjct: 219 PNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYS 278

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G+ P+  S+ SVL     LS+L LG++VH+   +  L  +      LI MY KCG
Sbjct: 279 QMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCG 338

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L DA  +F ++Q +DVV+W ++IS Y + G+G  A+ +F +M++ G+ PDSI FV++L 
Sbjct: 339 CLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLA 398

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL+D G  YF+ M  + GI  K +H+ C+VDLLGRAGK+ EA   I++MP +P  
Sbjct: 399 ACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDE 457

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LLSACRV+  +++   AA  L  LNP ++ G YV L+NIYA   +W DVA IR  
Sbjct: 458 RVWGPLLSACRVYSNMNIGILAADKLLMLNPEHS-GYYVLLSNIYAKAGRWADVAAIRSI 516

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M+   + K+PG S +E+   VH F +GD  HP+   I+E+L  L  +MK  GY+P+ + A
Sbjct: 517 MERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSA 576

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH V EE KE  L  HSEKLA+AF +I    GTPIRV KNLRVCGDCH A K IS I +R
Sbjct: 577 LHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAER 636

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EII+RDT RFHHF++G CSCGDYW
Sbjct: 637 EIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 92/167 (55%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y   G+  LA  +FDE+  KN+V +N MI  YV N   +D L + + M   G  P+  + 
Sbjct: 64  YAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTY 123

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             VL   S   SL +G Q+H  V K  L  +      LI+MY KC  L++A ++  EI  
Sbjct: 124 PCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPC 183

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +DVV+WN+M+S YAQ+G+   AL L  +M+   +KP+  T  +LL A
Sbjct: 184 RDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 163/398 (40%), Gaps = 75/398 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN------------------ 51
           N ++A + K +  LK+AQ++ D+IP  DVVS+N M+S    N                  
Sbjct: 159 NGLIAMYGKCKS-LKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217

Query: 52  ------------------SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
                             SD+V+   + F +L  K   SWN MI+ +V      +A  L+
Sbjct: 218 KPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLY 277

Query: 94  LAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKF 145
             M     E + VS  +++  Y +   L     + K A  K    +++   A+I  Y K 
Sbjct: 278 SQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKC 337

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G +  A  +F++M  +++V+W ++I+ Y +     D + +   M   G+ P++ +  SVL
Sbjct: 338 GCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVL 397

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDV 264
             CSH   L  G+    L+ +  +         ++ +  + G +++A     ++    D 
Sbjct: 398 AACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDE 457

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
             W  ++S          A R++  M    +  D +    L+L   H+G       Y+  
Sbjct: 458 RVWGPLLS----------ACRVYSNMNIGILAADKL----LMLNPEHSG-------YYVL 496

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + N Y  A +      +  ++ R G        IKK+P
Sbjct: 497 LSNIYAKAGRWADVAAIRSIMERKG--------IKKLP 526



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ +Y  CG+   A  +F EI  K+VV +N MI  Y  +   + AL ++  M  +G  PD
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
             T+  +L A + +  + +G+Q   +++   G+         ++ + G+   L EA  ++
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLK-IGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 359 KKMPFK------------PQPAIFGTLLSACRVHKRLDL 385
            ++P +             Q   F   L  CR  + L+L
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/520 (41%), Positives = 308/520 (59%), Gaps = 9/520 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYI 112
           A + F  +P ++  SW T+++         K    FL    +     NS ++S+++    
Sbjct: 126 ALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACG 185

Query: 113 ECGQLDKA-VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
             G L     ++ KV     V   +++I  YMK G +D    +FDEM T +LV WN++IA
Sbjct: 186 TPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIA 245

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           G+ ++      ++L   M   G   N  +L+SVL  C+ +  L++G+QVH  V K    +
Sbjct: 246 GFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYD--R 303

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+ MYCKCG L DA  LF  +  +DV++W+ MISG AQ+G+  +AL++FD MK
Sbjct: 304 DLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMK 363

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG  P++IT V +L AC+HAGLV+ G  YF SM   +GI  + +H  CMVDLLGRAGKL
Sbjct: 364 AEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKL 423

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA+  I +M F+P   I+ TLL ACR+HK   LA +AA  +  L P +  G  + L+NI
Sbjct: 424 DEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQ-GARILLSNI 482

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA +++W +  +   +M++  V K PG SWIE+G +VH F +G+  HP    I ++L  L
Sbjct: 483 YADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRL 542

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            +R K  GYVP  EF L  +G E KE LL +HSEKLAIAFG +    G P+R+ KNLR+C
Sbjct: 543 IRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRIC 602

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K +S  E + II+RD  RFHHF+ G CSCGDYW
Sbjct: 603 GDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 11/234 (4%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMM 189
           S+    +++S Y KFG +D A +LF  MP +N+V+W  ++A         ++ L+ L  M
Sbjct: 106 SLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEM 165

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              G+  N+ + SSVL  C     L     +H  + K  L  D    + LI  Y K GDL
Sbjct: 166 RRDGVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDL 222

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +    +F E+   D+V WN++I+G+AQ G G  A+ LF +MK+ G   +  T  ++L AC
Sbjct: 223 DSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRAC 282

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKM 361
               ++++G Q     V+ + +    D   +  ++D+  + G L++A  L  +M
Sbjct: 283 TGMVMLEVGRQ-----VHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRM 331



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 134/323 (41%), Gaps = 49/323 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M  +  V+W +V+A  A   G+ K+A     ++ +  V + +   S +L           
Sbjct: 133 MPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVLAA 192

Query: 50  ---------LNSD---------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
                    L+SD               D+ +    F  +   D   WN++I+GF Q  +
Sbjct: 193 MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGD 252

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECG------QLDKAVELFKVAPVKSVVAWTAMI 139
              A +LF+ M E   ++    ++  +         ++ + V    +   + ++   A++
Sbjct: 253 GVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLILHNALL 312

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K G +  A+ LF  M  +++++W+ MI+G  +N  + + LK+  +M   G  PN  
Sbjct: 313 DMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNI 372

Query: 200 SLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           ++  VL  CSH   ++ G    + + +L    P  +    +  L+    + G L++A K 
Sbjct: 373 TMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLG---RAGKLDEAMKF 429

Query: 256 FLEIQ-RKDVVTWNAMISGYAQH 277
             E++   D V W  ++     H
Sbjct: 430 IGEMKFEPDSVIWRTLLGACRMH 452


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/612 (36%), Positives = 332/612 (54%), Gaps = 50/612 (8%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W++++     Q+G+ +++ +LF  +   D +  N    C LL++        + Q + 
Sbjct: 381 VVWSALITCL-DQQGQSEESIKLFHLMRLGDTLP-NQYTICSLLSAATNTGNLQYGQSIH 438

Query: 67  I--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                     D A  N +++ +++   +     L+ +M +++ +SW+A +SG  +CG  D
Sbjct: 439 ACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498

Query: 119 KAVE--------------------------LFKVAPVKSVVAW-------------TAMI 139
           + +                           LF V   + V A              TA+I
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALI 558

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K   ++ A+  F+ +  ++L TW  +I  Y + +  E  L   R M   G++PN  
Sbjct: 559 DMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEF 618

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +L+  L GCS L+SL+ G+Q+H +VFKS    D    + L+ MY KCG +E+A  LF  +
Sbjct: 619 TLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL 678

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            R+D + WN +I GYAQ+G+G KAL  F  M DEG+ PD +TF  +L AC+H GLV+ G 
Sbjct: 679 IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGK 738

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++F+SM  D+GI+   DH  CMVD+LGR GK  E  D I+KM       I+ T+L A ++
Sbjct: 739 EHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKM 798

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H  L L E AA  LF L P   +  Y+ L+NI+A   +WDDV R+R  M    V K PG 
Sbjct: 799 HNNLVLGEKAANKLFELQPEEESS-YILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGC 857

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SW+E    VH F S D  HP++  IH KL EL++ +    YVP  E+ LH VGE  K++ 
Sbjct: 858 SWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKEN 917

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L FHSE+LA+ F LI       IR+FKNLR+C DCH   K+IS+I  +EI+VRD  RFHH
Sbjct: 918 LRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHH 977

Query: 560 FKDGTCSCGDYW 571
           FK+G CSC D+W
Sbjct: 978 FKNGACSCNDFW 989



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 150/306 (49%), Gaps = 9/306 (2%)

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
           ++P +D  SW  +I G V +     +  LF  M  +    N  + +  +     C  LD 
Sbjct: 172 KMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDL 231

Query: 120 AVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
             ++    FK+  +  +   +A++  Y K G+++LA K+F  MP +N VTWN ++ GY +
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
                  LKL   M+ L ++ N  +L++VL GC++  +L+ G+ +H L+ K     +   
Sbjct: 292 RGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              L+ MY KCG   DA  +F  I++ D+V W+A+I+   Q G+ E++++LF  M+    
Sbjct: 352 GCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDT 411

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            P+  T  +LL A  + G +  G Q   + V  YG          +V +  + G + +  
Sbjct: 412 LPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT 470

Query: 356 DLIKKM 361
            L + M
Sbjct: 471 KLYESM 476



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W ++++ Y K      A  +  +MP +++V+W A+I G V   +A D + L + M   GI
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI 209

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +L++ L  CS   +L LGKQ+H   FK  L  D    + L+ +Y KCG++E A K
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F+ +  ++ VTWN +++GYAQ G     L+LF  M +  +K +  T   +L  C ++  
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           +  G Q   S++   G          +VD+  + G  ++A+ + K +  KP   ++  L+
Sbjct: 330 LKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387

Query: 375 S 375
           +
Sbjct: 388 T 388



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 158/354 (44%), Gaps = 49/354 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+W +++ G   + G   D+  LF ++    ++     L+   L +  +  A D  +
Sbjct: 176 RDVVSWTALIQGLVAE-GFANDSIYLFQEMQNEGIMPNEFTLA-TGLKACSLCMALDLGK 233

Query: 64  RLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           ++  +        D    + ++  + +   +  A  +F+ MPE+N V+W+ +++GY + G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 116 QLDKAVELF-------------------------KVAPVKSVVAWTAMISGY-----MKF 145
            +   ++LF                         K      V+    +  GY     +  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 146 GKVDLAEK---------LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           G VD+  K         +F  +   ++V W+A+I    +   +E+ +KL  +M      P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  ++ S+L   ++  +LQ G+ +H  V+K     D      L++MY K G + D  KL+
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
             +  +D+++WNA +SG    G  ++ L +F  M +EG  P+  TF+++L +C+
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SS+L  C+   SL + K +H L+ K  +  D+     L+++Y KC     A  +  ++  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+W A+I G    G    ++ LF +M++EG+ P+  T    L AC+    +DLG Q 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ- 234

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             +     G+       + +VDL  + G++  A  +   MP
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 348/618 (56%), Gaps = 55/618 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           K TV +NS++ G++ + G  ++A ELF ++    +   +   + +L   +  DD      
Sbjct: 204 KDTVTFNSLMTGYSNE-GLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT----K 258

Query: 61  FFQRLP---IKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           F Q++    +K    WN  +       + +   + +   LF  MPE + +S++ +I+ Y 
Sbjct: 259 FGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYA 318

Query: 113 ECGQLDKAVELFK-------------VAPVKSVVAWT----------------------- 136
             GQ  ++ +LF+              A + S+   +                       
Sbjct: 319 WNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR 378

Query: 137 ---AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              A++  Y K      A+K+FD +  K+ V W AMI+ YV+    E+G+ +   M   G
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTG 438

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  + ++ +S+L  C++L+S+ LG+Q+H L+ +S    +  + + L+  Y KCG + DA 
Sbjct: 439 VPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAI 498

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K F E+  ++ V+WNA+IS YAQ+G  +  L  F +M   G KPDS++F+++L AC+H G
Sbjct: 499 KSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCG 558

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            V+  + +F+SM   Y +  K +HYT MVD+L R G+  EA  L+ +MPF+P   ++ ++
Sbjct: 559 FVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSV 618

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L++CR+HK  +LA+ AA  LFN+     A  Y+ ++NIYA   +WD+VA+++ +M++  V
Sbjct: 619 LNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGV 678

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+P YSW+E+    H F + D+ HPE+  I  K+  L K M+  GY PD   ALH V E
Sbjct: 679 RKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDE 738

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
            +K + L +HSE+ AIAF L+  P G+PI V KNLR C DCH A K IS I +REIIVRD
Sbjct: 739 VIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRD 798

Query: 554 TTRFHHFKDGTCSCGDYW 571
           ++RFHHFKDG CSCGDYW
Sbjct: 799 SSRFHHFKDGVCSCGDYW 816



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 117/209 (55%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           N+   +  ++ ++E G L  A ++F   P K+ ++   MISG++KFGK+  A +LFD M 
Sbjct: 42  NTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +  V+W  +I GY++++ +++  +L   M   GI P+  +L ++L G   L +  +  Q
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V K     +      L+  YCK   L  A +LF  +  KD VT+N++++GY+  G 
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLA 308
            E+A+ LF ++ + G+KP   TF ALL A
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 171/401 (42%), Gaps = 72/401 (17%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            L   D+V A   F ++P K+T S N MISG ++   ++KAR+LF  M E+ +VSW+ +I
Sbjct: 53  FLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILI 112

Query: 109 SGYIECGQLDKAVELF---------------------------------------KVAPV 129
            GY++  Q  +A  L+                                       K+   
Sbjct: 113 GGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYE 172

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            +++   +++  Y K   + LA +LF  M  K+ VT+N+++ GY      E+ ++L   +
Sbjct: 173 YNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL 232

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              GI+P+  + +++L     L   + G+QVH  V K+    +      L+  Y K   +
Sbjct: 233 HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQV 292

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           ++  KLF E+   D +++N +I+ YA +G+ +++  LF K++          F  LL   
Sbjct: 293 DEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIA 352

Query: 310 NHAGLVDLGIQY----------FDSMVNDY-------------------GIAAKPD-HYT 339
             +  + +G Q           F+S V +                     IA K    +T
Sbjct: 353 TSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWT 412

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQP---AIFGTLLSAC 377
            M+    + GK  E +++   M     P   A F ++L AC
Sbjct: 413 AMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRAC 453


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/522 (40%), Positives = 319/522 (61%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGY 111
           A+  F  L ++D+ +W+ M+ GF +  + A     F  +      P+  ++ +       
Sbjct: 54  AYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRD 113

Query: 112 IECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               Q+ + +   + K   +       +++  Y K   V+ A++LF+ M +K+LVTW  M
Sbjct: 114 RTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVM 173

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I  Y + + A + L L   M   G+ P+  ++ +V+  C+ L ++   +  +  + ++  
Sbjct: 174 IGAYADCN-AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGF 232

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D    T +I MY KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G+ A+ LF  
Sbjct: 233 SLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHM 292

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M    + P+ +TFV+LL AC+HAGL++ G+++F+SM  ++ +     HYTCMVDLLGRAG
Sbjct: 293 MLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAG 352

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           +L EA+ LI+ M  +    ++  LL ACR+H +++LAE AA +L  L P N  G YV L+
Sbjct: 353 RLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNP-GHYVLLS 411

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYA   KW+ VA+ R  M +  + K+PG++WIEV    ++F  GDR HP+   I+E L 
Sbjct: 412 NIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLM 471

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
            L K++++AGYVPD +F L  V EEVK+++L  HSEKLAIAFGLI +P G PIR+ KNLR
Sbjct: 472 SLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLR 531

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH  +K +S+I +R IIVRD  RFHHF DGTCSCGDYW
Sbjct: 532 VCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
             ++ +V    ++  Y +   +D A  LFD +  ++  TW+ M+ G+ +           
Sbjct: 30  GTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATF 89

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R ++  G+ P+  +L  V+  C   + LQ+G+ +H +V K  L  D      L+ MY KC
Sbjct: 90  RELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKC 149

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
             +EDA +LF  +  KD+VTW  MI  YA     E +L LFD+M++EG+ PD +  V ++
Sbjct: 150 IVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVVPDKVAMVTVV 208

Query: 307 LACNHAGLVDLGIQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            AC       LG  +     NDY    G +      T M+D+  + G +  A ++  +M 
Sbjct: 209 NAC-----AKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMK 263

Query: 363 FK 364
            K
Sbjct: 264 EK 265



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 120/273 (43%), Gaps = 47/273 (17%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLP-IKDTASWNTMISGF 80
           ++DAQ LF+++   D+V++ +M+      N+ + +  FD  +    + D  +  T+++  
Sbjct: 152 VEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDRMREEGVVPDKVAMVTVVNAC 211

Query: 81  VQKKNMAKAR---DLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSV 132
            +   M +AR   D  +    +N  S      +AMI  Y +CG ++ A E+F     K+V
Sbjct: 212 AKLGAMHRARFANDYIV----RNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNV 267

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           ++W+AMI+ Y   G+                                +D + L  MM+  
Sbjct: 268 ISWSAMIAAYGYHGR-------------------------------GKDAIDLFHMMLSC 296

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLED 251
            I PN  +  S+L  CSH   ++ G +    +++    + D    T ++ +  + G L++
Sbjct: 297 AILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDE 356

Query: 252 ACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 283
           A +L   +   KD   W+A++     H K E A
Sbjct: 357 ALRLIEAMTVEKDERLWSALLGACRIHSKMELA 389



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A S   +LL C ++  +   +QVH  V  +   +D      L+  Y +   ++DA  LF 
Sbjct: 3   AESCIDLLLRCRNVFHI---RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFD 59

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +D  TW+ M+ G+A+ G        F ++   G+ PD+ T   ++  C     + +
Sbjct: 60  GLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQI 119

Query: 318 GIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           G +    +V  +G+ +  DH+ C  +VD+  +   + +A  L ++M
Sbjct: 120 G-RVIHDVVLKHGLLS--DHFVCASLVDMYAKCIVVEDAQRLFERM 162


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 348/618 (56%), Gaps = 55/618 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           K TV +NS++ G++ + G  ++A ELF ++    +   +   + +L   +  DD      
Sbjct: 204 KDTVTFNSLMTGYSNE-GLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT----K 258

Query: 61  FFQRLP---IKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           F Q++    +K    WN  +       + +   + +   LF  MPE + +S++ +I+ Y 
Sbjct: 259 FGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYA 318

Query: 113 ECGQLDKAVELFK-------------VAPVKSVVAWT----------------------- 136
             GQ  ++ +LF+              A + S+   +                       
Sbjct: 319 WNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR 378

Query: 137 ---AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              A++  Y K      A+K+FD +  K+ V W AMI+ YV+    E+G+ +   M   G
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTG 438

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  + ++ +S+L  C++L+S+ LG+Q+H L+ +S    +  + + L+  Y KCG + DA 
Sbjct: 439 VPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAI 498

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K F E+  ++ V+WNA+IS YAQ+G  +  L  F +M   G KPDS++F+++L AC+H G
Sbjct: 499 KSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCG 558

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            V+  + +F+SM   Y +  K +HYT MVD+L R G+  EA  L+ +MPF+P   ++ ++
Sbjct: 559 FVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSV 618

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L++CR+HK  +LA+ AA  LFN+     A  Y+ ++NIYA   +WD+VA+++ +M++  V
Sbjct: 619 LNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGV 678

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+P YSW+E+    H F + D+ HPE+  I  K+  L K M+  GY PD   ALH V E
Sbjct: 679 RKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDE 738

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
            +K + L +HSE+ AIAF L+  P G+PI V KNLR C DCH A K IS I +REIIVRD
Sbjct: 739 VIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRD 798

Query: 554 TTRFHHFKDGTCSCGDYW 571
           ++RFHHFKDG CSCGDYW
Sbjct: 799 SSRFHHFKDGVCSCGDYW 816



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 117/209 (55%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           N+   +  ++ ++E G L  A ++F   P K+ ++   MISG++KFGK+  A +LFD M 
Sbjct: 42  NTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +  V+W  +I GY++++ +++  +L   M   GI P+  +L ++L G   L +  +  Q
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V K     +      L+  YCK   L  A +LF  +  KD VT+N++++GY+  G 
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLA 308
            E+A+ LF ++ + G+KP   TF ALL A
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 171/401 (42%), Gaps = 72/401 (17%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            L   D+V A   F ++P K+T S N MISG ++   ++KAR+LF  M E+ +VSW+ +I
Sbjct: 53  FLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILI 112

Query: 109 SGYIECGQLDKAVELF---------------------------------------KVAPV 129
            GY++  Q  +A  L+                                       K+   
Sbjct: 113 GGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYE 172

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            +++   +++  Y K   + LA +LF  M  K+ VT+N+++ GY      E+ ++L   +
Sbjct: 173 YNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL 232

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              GI+P+  + +++L     L   + G+QVH  V K+    +      L+  Y K   +
Sbjct: 233 HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQV 292

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           ++  KLF E+   D +++N +I+ YA +G+ +++  LF K++          F  LL   
Sbjct: 293 DEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIA 352

Query: 310 NHAGLVDLGIQY----------FDSMVNDY-------------------GIAAKPD-HYT 339
             +  + +G Q           F+S V +                     IA K    +T
Sbjct: 353 TSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWT 412

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQP---AIFGTLLSAC 377
            M+    + GK  E +++   M     P   A F ++L AC
Sbjct: 413 AMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRAC 453


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 340/565 (60%), Gaps = 14/565 (2%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWN 74
           + G + +A+    KI + D+   ++ L  +L+N+      V  A   F  +  +   SWN
Sbjct: 73  RNGAVMEAKACHGKIIRIDLEG-DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 131

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVA--PVKS 131
           TMI  + + +  ++A D+FL M  +        IS  +  CG    A+E  K+    VK+
Sbjct: 132 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 191

Query: 132 VV-----AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            +       TA++  Y K G +  A ++F+ M  K+ VTW++M+AGYV+N   E+ L L 
Sbjct: 192 CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLY 251

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R    + +  N  +LSSV+  CS+L++L  GKQ+H ++ KS    +    +  + MY KC
Sbjct: 252 RRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKC 311

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L ++  +F E+Q K++  WN +ISG+A+H + ++ + LF+KM+ +GM P+ +TF +LL
Sbjct: 312 GSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLL 371

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             C H GLV+ G ++F  M   YG++    HY+CMVD+LGRAG L EA +LIK +PF P 
Sbjct: 372 SVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPT 431

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            +I+G+LL++CRV+K L+LAE AA  LF L P N AG +V L+NIYAA K+W+++A+ R 
Sbjct: 432 ASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN-AGNHVLLSNIYAANKQWEEIAKSRK 490

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            +++ +V K+ G SWI++   VH F  G+  HP +  I   L  L  + +  GY P +E 
Sbjct: 491 LLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEH 550

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V    KE+LL+ HSEKLA+ FGL+ +P  +P+R+ KNLR+C DCH   K  S   +
Sbjct: 551 ELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATR 610

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R IIVRD  RFHHF DG CSCGD+W
Sbjct: 611 RFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N + +  +L  C+   ++   K  H  + +  L  D T L  LI+ Y KCG +E A ++F
Sbjct: 60  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             +  + +V+WN MI  Y ++    +AL +F +M++EG K    T  ++L AC
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 117/271 (43%), Gaps = 47/271 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K++V W+S++AG+  Q    ++A  L+ +  +  +      LS ++    ++ A  +
Sbjct: 223 MQDKSSVTWSSMVAGYV-QNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 281

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q   +          SGF          ++F+A         S+ +  Y +CG L ++
Sbjct: 282 GKQMHAV-------ICKSGF--------GSNVFVA---------SSAVDMYAKCGSLRES 317

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVEN 176
             +F     K++  W  +ISG+ K  +      LF++M       N VT++++++     
Sbjct: 318 YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 377

Query: 177 SWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
              E+G +  ++M    G+ PN    S +  +LG + L S     + ++L+   P     
Sbjct: 378 GLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS-----EAYELIKSIP----- 427

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
               P  S++   G L  +C+++  ++  +V
Sbjct: 428 --FDPTASIW---GSLLASCRVYKNLELAEV 453


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/434 (47%), Positives = 278/434 (64%), Gaps = 1/434 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S + K G + LA ++F       +  WNAMIA YV++  +   ++L   ++   I PN
Sbjct: 6   VLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPN 65

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           + +L  VL  C+ L++L+ GK+VH +     +  +    T ++ MY KCG L++A + F 
Sbjct: 66  SVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFA 125

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I+R D V+W AM++ +AQHG  ++AL  F +M+++G KP+ +TFV LL AC+H GLV+ 
Sbjct: 126 RIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEE 185

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +YFD M   YGIA    HY CMVDLLGRAG L EA D + +MP  P  A+  +LLSAC
Sbjct: 186 GRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSLLSAC 245

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R +K +D  E  A  +   +  + +  YV LA+IY A  KW++ ARIR  M E  V K P
Sbjct: 246 RSYKDVDRGERIAKRMLE-SFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKDP 304

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S IEV   V EF +GD  H ++  I  KL+EL   MK AGYVPD    LH V EE KE
Sbjct: 305 GRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEEEKE 364

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           Q+LL+HSEKLA+AFGL+  P G+PIRV KNLRVC DCH A K ISAIE+R I+ RD +RF
Sbjct: 365 QVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRF 424

Query: 558 HHFKDGTCSCGDYW 571
           HHF++G CSCGDYW
Sbjct: 425 HHFENGVCSCGDYW 438



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 4/166 (2%)

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
           +L  ++S + K G+L  A ++F    R  +  WNAMI+ Y QHG   +A+RLFD++    
Sbjct: 2   SLVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARR 61

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           ++P+S+T + +L AC     +  G +   ++  D+G+ ++    T +VD+  + G L EA
Sbjct: 62  IEPNSVTLMEVLDACASLAALRDG-KRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEA 120

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
           V+   ++  +     +  +L+A   H  +D  LA F  M      P
Sbjct: 121 VEAFARIE-RHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKP 165



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 112/270 (41%), Gaps = 44/270 (16%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           WN MI+ +VQ  +  +A  LF  +     E NSV+   ++        L     +  +A 
Sbjct: 34  WNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTLMEVLDACASLAALRDGKRVHAIAR 93

Query: 129 ---VKSVVA-WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
              V S VA  TA++  Y K G +D A + F  +   + V+W AM+A + ++   +  L 
Sbjct: 94  DHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALA 153

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-KSPLCKDTTALTPLISMY 243
             + M   G +PN  +   +L  CSH   ++ G++   L+  +  +  D      ++ + 
Sbjct: 154 TFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLL 213

Query: 244 CKCGDLED----------------------ACKLFLEIQRKDVVT-------WN------ 268
            + G L++                      AC+ + ++ R + +        W+      
Sbjct: 214 GRAGYLDEAEDFLNRMPGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFWDESMPYV 273

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            + S Y   GK E+A R+   M + G++ D
Sbjct: 274 VLASIYRAAGKWEEAARIRSLMVERGVRKD 303


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/519 (42%), Positives = 308/519 (59%), Gaps = 13/519 (2%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           D    +F     L + D  +  T I G  QK  +    +LFL          + +++ Y 
Sbjct: 9   DTFTCSFVLKACLKLSDVVNGKT-IHGLFQK--LGFGSNLFLQ---------NMILNLYG 56

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            CG++  A+ LF+  P +  V W  +I+   K G +D A   F  MP KN+ +W +MI+G
Sbjct: 57  LCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISG 116

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           +V+     + + L   +    +RPN  ++ SVL  C+ L  L LG+ VH+   KS   ++
Sbjct: 117 FVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRN 176

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 LI MY KCG LE+A ++F E++ + VV+W+AMI+G A HG+ E+AL LF +M  
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+KP+ +TF+ LL AC+H GL+D G ++F SM  DYG+  + +HY C+VDL  RAG L 
Sbjct: 237 LGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLE 296

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA + I  MP KP   ++G LL  C+VHK +DLAE A  +L  L+P N  G YV ++NIY
Sbjct: 297 EAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLN-DGYYVVISNIY 355

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A  ++W+D AR+R  MK+  V K  G+S I V  VVHEF +GD+ HP+   I +   +L 
Sbjct: 356 AEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLL 415

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            +MK  GY P     L  + E+ KE+ L  HSEKLA+ FGL+  P GTPIR+ KNLRVC 
Sbjct: 416 VKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCE 475

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K IS I  REIIVRD  RFH F+DG CSC D+W
Sbjct: 476 DCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 147/272 (54%), Gaps = 21/272 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA  LF+K+PQ D V++NI+++  L    D+  A+ FF R+P K+  SW +MISGF
Sbjct: 59  GEMGDAMLLFEKMPQRDAVTWNIVIA-QLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGF 117

Query: 81  VQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLD--KAVELF--KVAPVKSV 132
           VQ     +A DLF+ + ++    N V+  ++++   + G LD  + V  +  K    ++V
Sbjct: 118 VQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNV 177

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
                +I  Y+K G ++ A ++F EM  + +V+W+AMIAG   +  AE+ L L   MI L
Sbjct: 178 HVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKL 237

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL------ISMYCKC 246
           G++PN  +   +L  CSH+  +  G++     F + +  D   +  +      + ++ + 
Sbjct: 238 GVKPNGVTFIGLLHACSHMGLIDEGRR-----FFASMTADYGVIPQIEHYGCVVDLFSRA 292

Query: 247 GDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
           G LE+A +  L +  K + V W A++ G   H
Sbjct: 293 GLLEEAHEFILSMPIKPNGVVWGALLGGCKVH 324



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 40/203 (19%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P+  + S VL  C  LS +  GK +H L  K     +      ++++Y  CG++ DA 
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 254 KLFLEIQRKDVVTWN-------------------------------AMISGYAQHGKGEK 282
            LF ++ ++D VTWN                               +MISG+ Q GK  +
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA--KPDHYTC 340
           A+ LF K++DE ++P+ +T V++L AC   G +DLG      +V++Y   +  K + + C
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-----RIVHEYSTKSGFKRNVHVC 180

Query: 341 --MVDLLGRAGKLVEAVDLIKKM 361
             ++D+  + G L  A  +  +M
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEM 203


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 316/559 (56%), Gaps = 42/559 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVS------ 103
           D+  A   F+ +  KD  SWN+MIS F Q      A +LFL M  +N    SV+      
Sbjct: 176 DLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLS 235

Query: 104 ------------W-----------------SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                       W                 +AM+  Y +CG +D A +LF   P + V +
Sbjct: 236 ACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFS 295

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLG 193
           WT M+ GY K G  D A  +F+ MP K +  WN +I+ Y +N   ++ L +   + +   
Sbjct: 296 WTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI 355

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            +P+  +L S L  C+ L ++ LG  +H  + +  +  +   ++ L+ MY KCG LE A 
Sbjct: 356 AKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKAL 415

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  ++ +DV  W+AMI+G   HG+G+ A+ LF +M++  +KP+S+TF  +L AC+HAG
Sbjct: 416 EVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAG 475

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G  +F  M   YG+  +  HY CMVD+LGRAG L EA++LI +M   P  +++G L
Sbjct: 476 LVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGAL 535

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L AC +H  ++L E A+  L  L P N  G  V L+NIYA   +W+ V+ +R  M++  +
Sbjct: 536 LGACSLHMNVELGELASDQLLKLEPRN-HGAIVLLSNIYAKTGRWEKVSELRKLMRDTEL 594

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG S IE    VHEF  GD  HP   +I+ KL+E+  ++K  GY P+    L  + E
Sbjct: 595 KKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEE 654

Query: 494 -EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            ++KEQ L  HSEKLAIAFGL+ +    PIRV KNLR+CGDCH   K +S +  R+I++R
Sbjct: 655 DDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLR 714

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF+DG CSC DYW
Sbjct: 715 DRYRFHHFRDGHCSCMDYW 733



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 42/342 (12%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAMISG 110
           A + F ++P  +  +WNT+I  +    +  ++  +FL +       P K +  +    + 
Sbjct: 78  ARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAAS 137

Query: 111 YIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            ++  ++  AV     K++    +    +++  Y   G + +AE+LF  +  K++V+WN+
Sbjct: 138 ELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNS 197

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI+ + + +  ED L+L   M    + PN+ ++  VL  C+    L+ G+ V   + +  
Sbjct: 198 MISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKG 257

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT---------------------- 266
           +  D T    ++ MY KCG ++DA KLF E+  +DV +                      
Sbjct: 258 IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFN 317

Query: 267 ---------WNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVD 316
                    WN +IS Y Q+GK ++AL +F++++  +  KPD +T V+ L AC   G +D
Sbjct: 318 AMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAID 377

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           LG  +    +   GI       + +VD+  + G L +A+++ 
Sbjct: 378 LG-GWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVF 418



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR---- 195
           S    F  +D A  LFD++P  NL TWN +I  Y  +S   D  +   + + L  +    
Sbjct: 67  SALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSS---DPFQSFVIFLDLLDKCEDL 123

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  +   V+   S L + ++G  VH +  K     D   L  L+  Y  CGDL  A +L
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERL 183

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  I  KDVV+WN+MIS +AQ    E AL LF KM+ E + P+S+T V +L AC     +
Sbjct: 184 FKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDL 243

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + G ++  S +   GI         M+D+  + G + +A  L  +MP
Sbjct: 244 EFG-RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP 289


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 309/522 (59%), Gaps = 12/522 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMIS--- 109
           A   F  +P KD  SWN++ISGF +  +M+     F  M      + N V+  +MIS   
Sbjct: 93  ALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTA--FYTMKFEMSVKPNEVTILSMISACN 150

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           G ++ G+      + KV     V    ++I+ Y K G +  A +LF+ +P  N V+WN++
Sbjct: 151 GALDAGKYIHGFGI-KVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSI 209

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           IA  V N  A +G+     M  LGI  +  ++ ++L  C HL   +L + +H L+F +  
Sbjct: 210 IAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
               T  T L+  Y K G L  +  +F E+   D V W AM++GYA HG G +A++LF+ 
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M ++G++PD +TF  LL AC+H+GLV+ G  YF+ M   YGI  + DHY+CMVDLLGR G
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L +A ++I+ MP +P   ++G LL ACRVH  ++L +  A +L N+ P +    Y+ L+
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRN-YIMLS 448

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+Y+A + W D A++R  +KE  + + PGYS IE G   H F  GDR HPE   I+ KL+
Sbjct: 449 NMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLE 508

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           EL  +++ AGY    E+ L  V EEVKE ++  HSEKLAIAFGL+    G  + + KNLR
Sbjct: 509 ELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLR 568

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +CGDCH   K IS IEKR II+RD  RFHHF DG CSC DYW
Sbjct: 569 ICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +++ Y K G  + A KLFD+MP K+LV+WN++I+G+              M   + ++PN
Sbjct: 80  LVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGF-SRCLHMSLTAFYTMKFEMSVKPN 138

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             ++ S++  C+   +L  GK +H    K     +      LI+MY K GDL  AC+LF 
Sbjct: 139 EVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFE 196

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I   + V+WN++I+    +G   + +  F+KM+  G++ D  T +ALL AC H G+  L
Sbjct: 197 AIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKL 256

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
             +    ++   G  AK    T ++D   + G+L  +  +  ++ F  + A
Sbjct: 257 A-ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA 306



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 122/284 (42%), Gaps = 41/284 (14%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAM 107
           S D+ +A   F+ +P  +T SWN++I+  V      +  D F  M     E++  +  A+
Sbjct: 185 SGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILAL 244

Query: 108 ISG--YIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +    ++  G+L +++   +F       +   TA++  Y K G++  +  +F E+   + 
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V W AM+AGY  +    + +KL   M   G+ P+  + + +L  CSH   +  GK    +
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNV 364

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           +       +   + P +  Y    DL   C L  +                         
Sbjct: 365 M------SEVYGIEPRVDHYSCMVDLLGRCGLLNDA------------------------ 394

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
              ++ +++  M+P++  + ALL AC   G ++LG +  + ++N
Sbjct: 395 ---YEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 97/177 (54%), Gaps = 7/177 (3%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S++L+  +   S+   +++H  VFKS L +D      L++ Y K G  EDA KLF ++ 
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMP 101

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGI 319
            KD+V+WN++ISG+++      +L  F  MK E  +KP+ +T ++++ ACN  G +D G 
Sbjct: 102 HKDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAG- 156

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           +Y        G   +      ++++ G++G L  A  L + +P  P    + ++++A
Sbjct: 157 KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 309/522 (59%), Gaps = 12/522 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMIS--- 109
           A   F  +P KD  SWN++ISGF +  +M+     F  M      + N V+  +MIS   
Sbjct: 93  ALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTA--FYTMKFEMSVKPNEVTILSMISACS 150

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           G ++ G+      + KV     V    ++I+ Y K G +  A +LF+ +P  N V+WN++
Sbjct: 151 GALDAGKYIHGFGI-KVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSI 209

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           IA  V N  A +G+     M  LGI  +  ++ ++L  C HL   +L + +H L+F +  
Sbjct: 210 IAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGF 269

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
               T  T L+  Y K G L  +  +F E+   D V W AM++GYA HG G +A++LF+ 
Sbjct: 270 GAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFES 329

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M ++G++PD +TF  LL AC+H+GLV+ G  YF+ M   YGI  + DHY+CMVDLLGR G
Sbjct: 330 MANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCG 389

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L +A ++I+ MP +P   ++G LL ACRVH  ++L +  A +L N+ P +    Y+ L+
Sbjct: 390 LLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRN-YIMLS 448

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+Y+A + W D A++R  +KE  + + PGYS IE G   H F  GDR HPE   I+ KL+
Sbjct: 449 NMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLE 508

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           EL  +++ AGY    E+ L  V EEVKE ++  HSEKLAIAFGL+    G  + + KNLR
Sbjct: 509 ELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLR 568

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +CGDCH   K IS IEKR II+RD  RFHHF DG CSC DYW
Sbjct: 569 ICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +++ Y K G  + A KLFD+MP K+LV+WN++I+G+              M   + ++PN
Sbjct: 80  LVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGF-SRCLHMSLTAFYTMKFEMSVKPN 138

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             ++ S++  CS   +L  GK +H    K     +      LI+MY K GDL  AC+LF 
Sbjct: 139 EVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFE 196

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I   + V+WN++I+    +G   + +  F+KM+  G++ D  T +ALL AC H G+  L
Sbjct: 197 AIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKL 256

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
             +    ++   G  AK    T ++D   + G+L  +  +  ++ F  + A
Sbjct: 257 A-ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA 306



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 122/284 (42%), Gaps = 41/284 (14%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAM 107
           S D+ +A   F+ +P  +T SWN++I+  V      +  D F  M     E++  +  A+
Sbjct: 185 SGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILAL 244

Query: 108 ISG--YIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +    ++  G+L +++   +F       +   TA++  Y K G++  +  +F E+   + 
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V W AM+AGY  +    + +KL   M   G+ P+  + + +L  CSH   +  GK    +
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNV 364

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           +       +   + P +  Y    DL   C L  +                         
Sbjct: 365 M------SEVYGIEPRVDHYSCMVDLLGRCGLLNDA------------------------ 394

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
              ++ +++  M+P++  + ALL AC   G ++LG +  + ++N
Sbjct: 395 ---YEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 97/177 (54%), Gaps = 7/177 (3%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S++L+  +   S+   +++H  VFKS L +D      L++ Y K G  EDA KLF ++ 
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMP 101

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGI 319
            KD+V+WN++ISG+++      +L  F  MK E  +KP+ +T ++++ AC  +G +D G 
Sbjct: 102 HKDLVSWNSLISGFSR--CLHMSLTAFYTMKFEMSVKPNEVTILSMISAC--SGALDAG- 156

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           +Y        G   +      ++++ G++G L  A  L + +P  P    + ++++A
Sbjct: 157 KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 330/573 (57%), Gaps = 14/573 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+VL  +AK  G    A+  F  + Q D  S+NI++   L + D +V A   F    ++D
Sbjct: 165 NAVLDMYAKC-GDHGRARRAFGAMAQKDATSWNIVIRACLQDGD-LVGATQLFDESSLRD 222

Query: 70  TASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAM--ISGYIECGQLDKAVEL 123
            +SWNT++SG ++  +  +A    + +  A    ++ ++S +  ++G +    L + +  
Sbjct: 223 VSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHG 282

Query: 124 FKVAPVKSVVAWT--AMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMIAGYVENSW 178
             V  V    A+   +++  Y K G+++ A  +FD   +        W+ M+AGYV+N  
Sbjct: 283 RVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGR 342

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ L+  R M+  G+      L+SV   C++   ++ G+QVH  V K     D    + 
Sbjct: 343 EEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASA 402

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           ++ MY K G LEDAC++F   Q K+V  W  M+  YA HG+G  AL +F +MK E + P+
Sbjct: 403 IVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPN 462

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            IT VA+L AC+H+GLV  G  YF+ M  +YGI    +HY CMVDL GRAG L +A + I
Sbjct: 463 EITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFI 522

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           ++     +  ++ TLLSACR+HK ++ A+ A+  L  L   + AG YV ++N+YA   KW
Sbjct: 523 EENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYD-AGSYVLMSNMYATNNKW 581

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            D  ++R SMKE  V K PG SWI +  VVH F + D  HP    I+  L++L +R+K  
Sbjct: 582 LDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEM 641

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GY    +  +H + EE +E  L FHSEKLAIAFG+I  P+GT +R+FKNLRVC DCH A 
Sbjct: 642 GYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAI 701

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K+I+    REI+VRD  RFHHFKDG CSC D+W
Sbjct: 702 KFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCI--LLNSDDVVAAFD 60
           W S+++G A++ G+  D    F ++        P+      +L C   L + +       
Sbjct: 92  WTSIISGCARE-GRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHG 150

Query: 61  FFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +  R  +  D    N ++  + +  +  +AR  F AM +K++ SW+ +I   ++ G L  
Sbjct: 151 WILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVG 210

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A +LF  + ++ V +W  ++SG M+ G                                 
Sbjct: 211 ATQLFDESSLRDVSSWNTIVSGLMRHGHTT------------------------------ 240

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + L  L+ M+  G+  +  + S V      LSS  LG+Q+H  V  + L +D      L
Sbjct: 241 -EALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSL 299

Query: 240 ISMYCKCGDLEDACKLF---LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           + MYCKCG++E A  +F    +        W+ M++GY Q+G+ E+AL  F +M  EG+ 
Sbjct: 300 MDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVP 359

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
                  ++  AC +AG+V+ G Q     V   G        + +VD+  ++G L +A  
Sbjct: 360 AGQFILTSVASACANAGMVEQGRQ-VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACR 418

Query: 357 LIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
           + +    K   A++ T+L +   H   R+ L  F+ M    + P
Sbjct: 419 IFRSAQTK-NVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMP 461



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGC 208
           A ++FD  PT++L  W ++I+G        DG++    M+       PNA  L+ VL  C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + L  ++ G+++H  + +S +C D      ++ MY KCGD   A + F  + +KD  +WN
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 269 AMISGYAQHGKGEKALRLFDK 289
            +I    Q G    A +LFD+
Sbjct: 197 IVIRACLQDGDLVGATQLFDE 217


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/476 (43%), Positives = 300/476 (63%), Gaps = 6/476 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKLFD 156
           E ++V W+AMI GY+  G+++ A ELF+  P +S+++ W AMISG+ + G V++A + FD
Sbjct: 202 EVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFD 261

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
           EM  ++ ++W+AMI GY++     + L++   M    IRP    L SVL  C++L +L  
Sbjct: 262 EMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQ 321

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+ +H    ++ +  D    T L+ MY KCG ++ A ++F ++  K+V +WNAMI G A 
Sbjct: 322 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 381

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG+ E A+ LF KM    + P+ ITFV +L AC H GLV  G+  F+SM  +YG+  + +
Sbjct: 382 HGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIE 438

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY C+VDLLGRAG L EA  ++  +P +P PA++G LL ACR H  ++L E     L  L
Sbjct: 439 HYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL 498

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT-VVHEFRSGD 455
            P N+ G Y  L+NIYA   +W++V  +R  MKE  +   PG S I++G   VH+F  GD
Sbjct: 499 EPQNS-GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGD 557

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
             HP++  I++ L ++++R+++ GY PD    L  + EE KE  +  HSEKLAI FGLI 
Sbjct: 558 GSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLIN 617

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
              GT IR+ KNLRVC DCH ATK IS +  REIIVRD  R+HHF++G CSC D+W
Sbjct: 618 TSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 12/229 (5%)

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           ++FD +   N+  WN MI   +EN+     + L   M+    RPN  +  +VL  CS   
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMI 271
            +  G QVH  + K  L  D   L+  I MY   G L +A ++  +   + D V WNAMI
Sbjct: 153 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            GY + G+ E A  LF+ M D  M     T+ A++   +  G+V++  ++FD M     I
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKERDEI 269

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
           +     ++ M+D   + G  +EA+++  +M     +P+  +  ++LSAC
Sbjct: 270 S-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 169/400 (42%), Gaps = 64/400 (16%)

Query: 38  VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLF 93
           V SY  + +   L+ +  +  FDF ++    +   WN MI   ++     KA     ++ 
Sbjct: 74  VKSYANVSTNRYLSFESSLRVFDFVRK---PNVFLWNCMIKVCIENNEPFKAILLYYEMV 130

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVD 149
           +A    N  ++ A++    + G + + V+    L K          ++ I  Y  FG++ 
Sbjct: 131 VAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLV 190

Query: 150 LAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            A ++ D+   + + V WNAMI GY+     E   +L   M      P+ S +S+     
Sbjct: 191 EARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMIST----- 239

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
                                         +IS + +CG +E A + F E++ +D ++W+
Sbjct: 240 ---------------------------WNAMISGFSRCGMVEVAREFFDEMKERDEISWS 272

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI GY Q G   +AL +F +M+ E ++P      ++L AC + G +D G ++  +    
Sbjct: 273 AMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKR 331

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP---AIFGTLLSACRVHKRLDL 385
             I       T +VD+  + G++  A ++ +KM  K      A+ G L    R    +DL
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391

Query: 386 AEFAAMNLFN--------LNPANAAGCYVQLANIYAAMKK 417
             F+ M+++         LN     G   +   I+ +M+K
Sbjct: 392 --FSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRK 429



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-----DLEDACKLFLEI 259
           LL     +SL   KQ H L+ ++   +D+     L+  Y           E + ++F  +
Sbjct: 39  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 98

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           ++ +V  WN MI    ++ +  KA+ L+ +M     +P+  T+ A+L AC+ +G+V  G+
Sbjct: 99  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGV 158

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           Q    +V  +G+       +  + +    G+LVEA
Sbjct: 159 QVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEA 192



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 50/267 (18%), Positives = 107/267 (40%), Gaps = 64/267 (23%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQ 116
           A++ F+++  K+ +SWN MI G         A DLF  M    N +++  +++     G 
Sbjct: 357 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGL 416

Query: 117 LDKAVELFK-------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           + K + +F        V P   +  +  ++    + G +  AEK+   +PT+        
Sbjct: 417 VQKGLTIFNSMRKEYGVEP--QIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE-------- 466

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SP 228
                                     P  +   ++L  C    +++LG++V +++ +  P
Sbjct: 467 --------------------------PTPAVWGALLGACRKHGNVELGERVGKILLELEP 500

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW-------------NAMISGYA 275
             +++   T L ++Y K G  E+  ++   ++ + + T              +  I G  
Sbjct: 501 --QNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDG 558

Query: 276 QHGKGEKALRLFDKMKD----EGMKPD 298
            H + +   ++ DK+K+    EG +PD
Sbjct: 559 SHPQVKDIYQMLDKVKERLQMEGYEPD 585


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/561 (41%), Positives = 326/561 (58%), Gaps = 25/561 (4%)

Query: 27  QELFDKIPQPDVVSYNIML---SC-------ILLNSDDVVAAFDFFQRLPIKDTASWNTM 76
           +E+ +   +PD  +Y  +L   SC       +L++ D +    DF       +    N +
Sbjct: 108 REMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDF-------NLFVGNGL 160

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVAPVK 130
           I+ + +   + +AR +F  M  K+ VSW++M++GY    + D A+E+      +   P  
Sbjct: 161 IAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDG 220

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
             +A             V   EK+F  +  KNL++WN MI  Y++NS     + L   M 
Sbjct: 221 CTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQME 280

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              + P+A + +SVL  C  LS+L LG+++H+ V K  LC +      LI MY +CG L+
Sbjct: 281 KCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLD 340

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           DA ++F  ++ +DV +W ++IS Y   G+G  A+ LF +M + G  PDSI FVA+L AC+
Sbjct: 341 DAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACS 400

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GL+D G  YF  M +DY I  + +HY C+VDLLGRAG++ EA ++IK+MP +P   ++
Sbjct: 401 HSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVW 460

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
            TLLS+CRV   +D+   AA NL  L P   +G YV L+NIYA   +W +V  IR  MK 
Sbjct: 461 ATLLSSCRVFTNMDIGILAADNLLQLAPEQ-SGYYVLLSNIYAKAGRWKEVTEIRSVMKR 519

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K PG S +E+   VH F +GD  HP+   I+E+L  L  +MK  GYVP+ + ALH 
Sbjct: 520 KKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHD 579

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V EE KE  L  HSEKLAI F L+       IR+ KNLRVCGDCH A K IS I +REII
Sbjct: 580 VEEEDKEGHLAVHSEKLAIVFALLNTQ-EYQIRITKNLRVCGDCHIAAKLISKIVEREII 638

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRDT RFHHFKDG CSCGDYW
Sbjct: 639 VRDTNRFHHFKDGVCSCGDYW 659



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 150/309 (48%), Gaps = 26/309 (8%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y   G+  L  K+FDEM  +N+V +N MI  YV N   +DGL + R M+  G RP+
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS   +L+ G  +H  V K  L  +      LI+MY KCG L +A ++F 
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E+  KDVV+WN+M++GYA + + + AL +  +M+D G KPD  T  +L+ A   A     
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAV--ANTSSE 236

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLL 374
            + Y + +  +         +  M+ +  +     +AVDL   ++K   +P    F ++L
Sbjct: 237 NVLYVEKIFVNLE-RKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVL 295

Query: 375 SAC----------RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
            AC          R+H+ ++  +       NL   N+      L ++YA     DD  R+
Sbjct: 296 PACGDLSALLLGRRIHEYVEKKKLCP----NLLLENS------LIDMYARCGCLDDAKRV 345

Query: 425 RLSMKENNV 433
              MK  +V
Sbjct: 346 FDRMKFRDV 354



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 176/386 (45%), Gaps = 60/386 (15%)

Query: 4   KTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNSDDVVAAF 59
           K  V+WNS++AG+A        L+  +E+ D   +PD  +  ++M +    +S++V+   
Sbjct: 183 KDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVE 242

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG 115
             F  L  K+  SWN MI  +++     +A DL+L M     E +++++++++     CG
Sbjct: 243 KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPA---CG 299

Query: 116 QLD---------KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
            L          + VE  K+ P  +++   ++I  Y + G +D A+++FD M  +++ +W
Sbjct: 300 DLSALLLGRRIHEYVEKKKLCP--NLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASW 357

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+ Y       + + L   M+  G  P++ +  ++L  CSH   L  G+    + FK
Sbjct: 358 TSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGR----IYFK 413

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D   +TP I  Y        AC                ++    + G+ ++A  +
Sbjct: 414 Q--MTDDYRITPRIEHY--------AC----------------LVDLLGRAGRVDEAYNI 447

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
             +M    ++P+   +  LL +C     +D+GI   D+++       +  +Y  + ++  
Sbjct: 448 IKQMP---IEPNERVWATLLSSCRVFTNMDIGILAADNLLQ--LAPEQSGYYVLLSNIYA 502

Query: 347 RAGKLVEAVDL---IKKMPFKPQPAI 369
           +AG+  E  ++   +K+   +  P I
Sbjct: 503 KAGRWKEVTEIRSVMKRKKIRKTPGI 528


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/492 (41%), Positives = 315/492 (64%), Gaps = 29/492 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL- 163
           +A++  Y +CG +D+A ++F     K VV+W AM++GY + G+ + A  LF++M  +N+ 
Sbjct: 52  NALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIE 111

Query: 164 ---VTWNAMIAGY---------------VENSWAEDGLKLLRMMI---GLGIRPNASSLS 202
              V+W+A+IA +               +++  A D L+L   M    GL ++PN  ++S
Sbjct: 112 LNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGL-VKPNCFTIS 170

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEI 259
             L+ C+ L++L+LG+Q+H  + ++    D+  L     LI MY K GD++ A  +F  +
Sbjct: 171 CALIACARLAALRLGRQIHAYILRNHF--DSAFLYVANCLIDMYAKSGDIDVARFVFDNL 228

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           ++K+ V+W ++++GY  HG+G++AL +FD+M+  G++PD +T + +L AC+H+G++D GI
Sbjct: 229 KQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGI 288

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++F+SM  ++G+    +HY CMVDLLGRAG+L EA++LI+ M  +P   ++  LLS CR+
Sbjct: 289 EFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRI 348

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H  ++L E AA  L  LN  N  G Y  L+NIYA  ++W DVAR+R  MK + + K PG 
Sbjct: 349 HANVELGEHAAKQLLELNSEND-GSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGC 407

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SW++       F   D+ HP+   I+E L+ L +R+K+ GYVP+  FALH V +E K  L
Sbjct: 408 SWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDL 467

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L  HSEKLA+A+G++    G PIR+ KNLRVCGDCH A  YIS I   EII+RD++RFHH
Sbjct: 468 LFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHH 527

Query: 560 FKDGTCSCGDYW 571
           FK G+CSC  YW
Sbjct: 528 FKKGSCSCSGYW 539



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 79/123 (64%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           + +RP+  SL +VL  C+ + +   GK VH +  +S   +D      L+ MY KCG +++
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F  I+ KDVV+WNAM++GY+Q G+ E AL LF+KM++E ++ + +++ A++ A   
Sbjct: 67  ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126

Query: 312 AGL 314
            GL
Sbjct: 127 RGL 129



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 94/318 (29%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGY------ 111
           F R+  KD  SWN M++G+ Q      A  LF  M E+    N VSWSA+I+ +      
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 112 ---------IECGQLDKAVELF-------------------------KVAPVK------- 130
                    ++ G+ + A+ELF                         ++A ++       
Sbjct: 131 CETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 131 --------SVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                   S   + A  +I  Y K G +D+A  +FD +  KN V+W +++ GY  +   +
Sbjct: 191 YILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L++   M  +G++P+  +L  VL  CSH   +  G +     F + + K+   +    
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIE-----FFNSMSKEFGVIP--- 302

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
                 G    AC                M+    + G+  +A+ L + M+   M+P SI
Sbjct: 303 ------GQEHYAC----------------MVDLLGRAGRLNEAMELIEGMQ---MEPSSI 337

Query: 301 TFVALLLACNHAGLVDLG 318
            +VALL  C     V+LG
Sbjct: 338 VWVALLSGCRIHANVELG 355


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 348/618 (56%), Gaps = 51/618 (8%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELF------DKIPQPDVVSYNIMLSCILLNS--- 52
           N K  V+WN+++ G    +G + +A  LF      + I   +V   NI+ +C+ ++    
Sbjct: 196 NRKNAVSWNTMIGGLC-TKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRS 254

Query: 53  ---------------DDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                          D++VA               A   F  +  K   SWN +I G  Q
Sbjct: 255 LKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQ 314

Query: 83  KKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKVA---PVKSVV 133
             +  KA +L++ M      P+  ++    + S +++  +  K V  F +     + S +
Sbjct: 315 NGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFI 374

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              +++S Y+  G+   A  LFD M  K+ V+WNAMI+GY +N   ED L L R ++  G
Sbjct: 375 G-ISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDG 433

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            +P+  ++ SVL  CS  S+L+LGK+ H    K+ L +D       I MY K G ++++ 
Sbjct: 434 FQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESR 493

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  ++ KD+ +WNA+I+ Y  HG GE+++ LF++M+  G  PD  TF+ +L  C+HAG
Sbjct: 494 SVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAG 553

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+ G++YF+ M N +GI  K +HY C++D+LGRAG+L +A+ L+ +MP +P   ++ +L
Sbjct: 554 LVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSL 613

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LS CR    L++ +  A  L  L P N    YV L+N+YA   +WDDV R+R  +K+  +
Sbjct: 614 LSFCRNFGELEIGQIVAEKLLELEPKNVEN-YVSLSNLYAGSGRWDDVRRVRQMIKDIGL 672

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K  G SWIE+G  VH F +GD + P+   +    ++LEK+M   GY P+    LH V E
Sbjct: 673 QKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDE 732

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E K + L  HSEKLAI FGL+    GT +R+FKNLR+C DCH A+K++S +  REII+RD
Sbjct: 733 EKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRD 792

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHFKDG CSCGDYW
Sbjct: 793 NKRFHHFKDGLCSCGDYW 810



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 54/369 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIMLSCILLNSDD 54
           M V+  V+WNS+++GF+ + G  KD  ++  ++        PD+ +   +L       D 
Sbjct: 92  MPVRNLVSWNSIISGFS-ENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD- 149

Query: 55  VVAAFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            V        L +K     D    N+++  + +   + +A+ LF     KN+VSW+ MI 
Sbjct: 150 -VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIG 208

Query: 110 GYIECGQLDKAVELFK------------------------VAPVKSV------------- 132
           G    G + +A  LF+                        ++ ++S+             
Sbjct: 209 GLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQ 268

Query: 133 ---VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
              +     ++ Y K G +  AE++F  M TK + +WNA+I G  +N      L L   M
Sbjct: 269 YDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQM 328

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              G+ P+  ++ S+LL  +HL SL+ GK+VH  V +  L  D+     L+S+Y  CG+ 
Sbjct: 329 TYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGES 388

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             A  LF  ++ K  V+WNAMISGY+Q+G  E AL LF K+  +G +P  I  V++L AC
Sbjct: 389 SSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGAC 448

Query: 310 NHAGLVDLG 318
           +    + LG
Sbjct: 449 SQQSALRLG 457



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 9/204 (4%)

Query: 115 GQLDKAVE------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           G LD+ +       + K+  +  V    A+I+ Y KFG VD A K+F  MP +NLV+WN+
Sbjct: 43  GSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNS 102

Query: 169 MIAGYVENSWAEDGLKLL-RMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           +I+G+ EN +++D   +L  MM G  G+ P+ ++L +VL  C+    +Q+G ++H L  K
Sbjct: 103 IISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK 162

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L +D      L+ MY KCG L +A  LF +  RK+ V+WN MI G    G   +A  L
Sbjct: 163 LGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNL 222

Query: 287 FDKMK-DEGMKPDSITFVALLLAC 309
           F +M+  E ++ + +T + +L AC
Sbjct: 223 FREMQMQEDIEVNEVTVLNILPAC 246



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 37/281 (13%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V AA   F  +P+++  SWN++ISGF +      ++D F  + E        M++G  E 
Sbjct: 82  VDAAVKVFHYMPVRNLVSWNSIISGFSEN---GFSKDCFDMLVE--------MMAG--EE 128

Query: 115 GQLDKAVELFKVAPV-----------------------KSVVAWTAMISGYMKFGKVDLA 151
           G L     L  V PV                       + V    +++  Y K G +  A
Sbjct: 129 GLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSH 210
           + LFD+   KN V+WN MI G     +  +   L R M +   I  N  ++ ++L  C  
Sbjct: 189 QMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLE 248

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           +S L+  K++H    +     D       ++ Y KCG L  A ++F  ++ K V +WNA+
Sbjct: 249 ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNAL 308

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           I G AQ+G   KAL L+ +M   G+ PD  T  +LLLA  H
Sbjct: 309 IGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           V+  C+      LG+ +H +V K  L  D      LI+MY K G ++ A K+F  +  ++
Sbjct: 37  VIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRN 96

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +V+WN++ISG++++G  +    +  +M   +EG+ PD  T V +L  C     V +GI+ 
Sbjct: 97  LVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR- 155

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
              +    G++        +VD+  + G L EA  L  K
Sbjct: 156 IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDK 194


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/518 (41%), Positives = 315/518 (60%), Gaps = 12/518 (2%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSAMISGYIECGQLD 118
           +P +D  +WN++ISG+  +  + K  ++   M         N V++ +MIS  +  G  +
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 119 KAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           + V +     K   ++ V    A+++ Y K G +  + KLF+++  KNLV+WN MI  ++
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +N  AE+GL    M   +G++P+ ++  +VL  C  +  ++L + +H L+       +T 
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTC 180

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
             T L+ +Y K G LED+  +FLEI   D + W AM++ YA HG G  A++ F+ M   G
Sbjct: 181 ITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYG 240

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           + PD +TF  LL AC+H+GLV+ G  YF++M   Y I  + DHY+CMVDL+GR+G L +A
Sbjct: 241 LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDA 300

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
             LIK+MP +P   ++G LL ACRV+K   L   AA  LF L P +    Y+ L+NIY+A
Sbjct: 301 YGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRN-YIMLSNIYSA 359

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
              W D +RIR  MK+  +V+  GYS+IE G  +H+F  GD  HPE   I +KLKE+ K+
Sbjct: 360 SGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKK 419

Query: 475 MKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           MK   G+    EF LH V E+VKE+++  HSEK+A+AFGL+ +    PI + KNLR+CGD
Sbjct: 420 MKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGD 479

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K IS IEKR II+RD+ RFHHF +G+CSC DYW
Sbjct: 480 CHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 318/547 (58%), Gaps = 11/547 (2%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           +  PD+  Y  ++  +L     +  A   F ++   +  +WNTMI G+ + +N   A +L
Sbjct: 70  LTNPDMGKY--LIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALEL 127

Query: 93  FLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMK 144
           +  M     E ++ ++  ++    +   + +  ++  +A        V     ++  Y  
Sbjct: 128 YRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAA 187

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G  + A KLF+ M  +NLVTWN++I GY  N    + L L R M   G+ P+  ++ S+
Sbjct: 188 CGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSL 247

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C+ L +L LG++ H  + K  L  +  A   L+ +Y KCG +  A K+F E++ K V
Sbjct: 248 LSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 307

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V+W ++I G A +G G++AL LF +++ +G+ P  ITFV +L AC+H G+VD G  YF  
Sbjct: 308 VSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKR 367

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M  +YGI  K +HY CMVDLLGRAG + +A + I+ MP +P   ++ TLL AC +H  L 
Sbjct: 368 MKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 427

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           L E A   L  L P + +G YV L+N+YA+ ++W DV ++R +M    V K PG+S +E+
Sbjct: 428 LGEVARAQLLQLEPKH-SGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVEL 486

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
              +HEF  GDR HP+   I+ KL E+ K +KL GYVP +   L  + EE KE  L +HS
Sbjct: 487 RNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHS 546

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EK+AIAF LI    G PIRV KNLRVC DCH A K IS +  REI+VRD +RFHHFKDG 
Sbjct: 547 EKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGH 606

Query: 565 CSCGDYW 571
           CSC DYW
Sbjct: 607 CSCKDYW 613



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 24/236 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +  V WNSV+ G+A   G+  +A  LF ++     +PD  +   M+S  LL++   +
Sbjct: 201 MAERNLVTWNSVINGYALN-GRPNEALTLFREMGLRGVEPDGFT---MVS--LLSACAEL 254

Query: 57  AAFDFFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            A    +R  +         +  + N ++  + +  ++ +A  +F  M EK+ VSW+++I
Sbjct: 255 GALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLI 314

Query: 109 SGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
            G    G   +A+ELFK    K    S + +  ++      G VD     F  M  +  +
Sbjct: 315 VGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGI 374

Query: 165 TWNAMIAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
                  G + +     GL  +    +  + ++PNA    ++L  C+    L LG+
Sbjct: 375 VPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGE 430


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 315/551 (57%), Gaps = 8/551 (1%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG-----F 80
           A+ +FD  P P  + +N M+      S     A + +  +  K     +  I       +
Sbjct: 102 ARSVFDSTPNPSRILWNSMIRA-YTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMY 160

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +  ++ +AR++F  MP+++ V+W+AMI+G  +      A  +F     +  V+W  M++
Sbjct: 161 SKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMA 220

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           GY   G      +LFD+M   N VTWN +IA Y++N  A++ +     M      PN+ +
Sbjct: 221 GYAHNGCFVEVLELFDKMKLGN-VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 279

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
             SVL   ++L++ + G   H  + +     +T     LI MY KCG L+ + KLF E+ 
Sbjct: 280 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD 339

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            KD V+WNAM+SGYA HG G++A+ LF  M++  ++ DS++FV++L AC HAGLV+ G +
Sbjct: 340 HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRK 399

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
            F SM + Y I    +HY CMVDLLGRAG   E +  IK MP +P   ++G LL +CR+H
Sbjct: 400 IFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMH 459

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
             + L E A  +L  L P N A  +V L++IYA   +W D  + R  M +  + K PG S
Sbjct: 460 SNVKLGEVALDHLVKLEPRNPAH-FVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCS 518

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           W+E+   VH FR GD+ HP+L S+H     L ++M+  GYVPD    L  V EE KE  L
Sbjct: 519 WVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFL 578

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSE+LAI F L+  P G+ I++ KNLRVC DCH  TK+IS I  R IIVRD TRFHHF
Sbjct: 579 YSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHF 638

Query: 561 KDGTCSCGDYW 571
           +DG CSC DYW
Sbjct: 639 EDGICSCNDYW 649



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 148/324 (45%), Gaps = 48/324 (14%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L     + G LK A+E+FDK+P+ DVV++N M++  L  S+D   A   F ++  +D  S
Sbjct: 156 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG-LSQSEDPYVARRVFDQMVDQDDVS 214

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-------- 124
           W TM++G+       +  +LF  M   N V+W+ +I+ Y++ G   +A+  F        
Sbjct: 215 WGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVIIAAYMQNGHAKEAISSFHQMRLENF 273

Query: 125 --------KVAPVKSVVA-----------------------WTAMISGYMKFGKVDLAEK 153
                    V P  + +A                         ++I  Y K G++D +EK
Sbjct: 274 HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 333

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LF+EM  K+ V+WNAM++GY  +   +  + L  +M    ++ ++ S  SVL  C H   
Sbjct: 334 LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGL 393

Query: 214 LQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--RKDVVTWNAM 270
           ++ G+++ H +  K  +  D      ++ +  + G L D    F+++     D   W A+
Sbjct: 394 VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG-LFDETLGFIKVMPVEPDAGVWGAL 452

Query: 271 ISGYAQHGK---GEKALRLFDKMK 291
           +     H     GE AL    K++
Sbjct: 453 LGSCRMHSNVKLGEVALDHLVKLE 476



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 38/190 (20%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I+ Y  F K DLA  +FD  P  + + WN+MI  Y  +    + L++   M+     
Sbjct: 87  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE---- 142

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
                                         K  L +D      L+ MY K GDL+ A ++
Sbjct: 143 ------------------------------KGGLERDVFIGAGLVDMYSKMGDLKRAREV 172

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++ ++DVV WNAMI+G +Q      A R+FD+M D+    D +++  ++    H G  
Sbjct: 173 FDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQ----DDVSWGTMMAGYAHNGCF 228

Query: 316 DLGIQYFDSM 325
              ++ FD M
Sbjct: 229 VEVLELFDKM 238



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 15/211 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFD 60
           +  T+  NS++  +AK  G+L  +++LF+++   D VS+N MLS   +  + D  +A F 
Sbjct: 309 LSNTLVGNSLIDMYAKC-GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 367

Query: 61  FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
             Q   ++ D+ S+ +++S       + + R +F +M +K  +      ++ M+      
Sbjct: 368 LMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRA 427

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMI 170
           G  D+ +   KV PV+     W A++        V L E   D   ++  +N   +  + 
Sbjct: 428 GLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 487

Query: 171 AGYVENS-WAEDGLKLLRMM-IGLGIRPNAS 199
           + Y ++  WA+ G    +M  +GL   P  S
Sbjct: 488 SIYAQSGRWADAGKARSKMNDLGLKKTPGCS 518


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 305/520 (58%), Gaps = 9/520 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYI 112
           A   F  +P+++  +W T+++         +    FL    +     N+ ++S+++    
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 113 ECGQLDKA-VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
             G L        K      V   +++I  Y+K G +D   ++FDEM T++LV WN++IA
Sbjct: 183 TPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIA 242

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           G+ ++      ++L   M   G   N  +L+SVL  C+ +  L+ G+QVH  V K    +
Sbjct: 243 GFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYD--R 300

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+ MYCKCG LEDA  LF  + ++DV++W+ M+SG AQ+GK  +ALR+FD MK
Sbjct: 301 DLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMK 360

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            +G+ P+ +T V +L AC+HAGLV+ G  YF SM   +GI  + +H+ CMVDLLGRAGKL
Sbjct: 361 SQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKL 420

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EAV+ I  M  +P   I+ TLL ACR+HK   LA +AA  +  L P +  G  V L+N 
Sbjct: 421 DEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEP-DDQGARVLLSNT 479

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA +++W D  +   +M++  + K PG SWIE+   VH F +GD  HP   +I ++L  L
Sbjct: 480 YADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRL 539

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R+K  GYVP  EF L  +  E KE LL +HSEK+AI FG +    G PIR+ KNLR+C
Sbjct: 540 IGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRIC 599

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K +S  E R I++RD  RFHHF+DG CSCGDYW
Sbjct: 600 GDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE-NSWAEDGLKLLRMMIGLGI 194
            ++ S Y KFG +D A ++FD MP +N+VTW  ++A     +   ++ L+ L  M   G+
Sbjct: 108 NSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGV 167

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PNA + SSVL  C+    L     VH    K+ L  D    + LI  Y K GDL+   +
Sbjct: 168 APNAYTFSSVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRR 224

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E+  +D+V WN++I+G+AQ G G  A+ LF +MKD G   +  T  ++L AC    +
Sbjct: 225 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVM 284

Query: 315 VDLGIQYFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++ G Q    ++  D  +      +  ++D+  + G L +A  L  +MP
Sbjct: 285 LEAGRQVHAHVLKYDRDLIL----HNALLDMYCKCGSLEDADALFHRMP 329



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 6/127 (4%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLV-FKSPLCKDTTA----LTPLISMYCKCGDL 249
           R +  SL+ ++  C    +   G+ +H+ V    PL  D          L SMY K G L
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQ-HGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +DA ++F  +  ++VVTW  +++  A   G+ ++ALR    M+ +G+ P++ TF ++L A
Sbjct: 121 DDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 309 CNHAGLV 315
           C   G++
Sbjct: 181 CTTPGML 187



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 18/191 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD---TASWNTMI 77
           G L   + +FD++   D+V +N +++     S D V A + F R+  KD   +++  T+ 
Sbjct: 217 GDLDGGRRVFDEMVTRDLVVWNSIIAG-FAQSGDGVGAIELFMRM--KDAGFSSNQGTLT 273

Query: 78  S------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           S      G V  +   +     L   +++ +  +A++  Y +CG L+ A  LF   P + 
Sbjct: 274 SVLRACTGMVMLEAGRQVHAHVLKY-DRDLILHNALLDMYCKCGSLEDADALFHRMPQRD 332

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLR 187
           V++W+ M+SG  + GK   A ++FD M ++    N VT   ++         EDG    R
Sbjct: 333 VISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFR 392

Query: 188 MMIGL-GIRPN 197
            M  L GI+P 
Sbjct: 393 SMKRLFGIQPE 403



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV---A 57
           M  +  V WNS++AGFA Q G    A ELF ++      S    L+ +L     +V   A
Sbjct: 229 MVTRDLVVWNSIIAGFA-QSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEA 287

Query: 58  AFDFFQRLPI--KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                  +    +D    N ++  + +  ++  A  LF  MP+++ +SWS M+SG  + G
Sbjct: 288 GRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNG 347

Query: 116 QLDKAVELFKVAPVKSV 132
           +  +A+ +F +   + V
Sbjct: 348 KSVEALRVFDLMKSQGV 364


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/667 (35%), Positives = 354/667 (53%), Gaps = 100/667 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSY-NIM---------- 44
           M+V   V+WNS++  +AK  GK K A E+F ++      +PD ++  N++          
Sbjct: 188 MSVWDVVSWNSIIESYAKL-GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHS 246

Query: 45  ----LSCILLNSDDVVAAF-------------------DFFQRLPIKDTASWNTMISGFV 81
               L C  + S+ +   F                     F  + +KD  SWN M++G+ 
Sbjct: 247 LGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGY-------------------------- 111
           Q      A  LF  M E+    + V+WSA ISGY                          
Sbjct: 307 QIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366

Query: 112 --------------------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
                               I C  +   ++L K       +    +I  Y K  KVD A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTA 426

Query: 152 EKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLG 207
             +FD +  K  ++VTW  MI GY ++  A   L+LL  M       RPNA ++S  L+ 
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVA 486

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDV 264
           C+ L++L++GKQ+H    ++   ++   L     LI MY KCG + DA  +F  +  K+ 
Sbjct: 487 CASLAALRIGKQIHAYALRNQ--QNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           VTW ++++GY  HG GE+AL +FD+M+  G K D +T + +L AC+H+G++D G++YF+ 
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M   +G++  P+HY C+VDLLGRAG+L  A+ LI++MP +P P ++   LS CR+H +++
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           L E+AA  +  L  +N  G Y  L+N+YA   +W DV RIR  M+   V K PG SW+E 
Sbjct: 665 LGEYAAEKITEL-ASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
                 F  GD+ HP    I++ L +  +R+K  GYVP+  FALH V +E K+ LL  HS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLA+A+G++  P G  IR+ KNLRVCGDCH A  Y+S I   +II+RD++RFHHFK+G+
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGS 843

Query: 565 CSCGDYW 571
           CSC  YW
Sbjct: 844 CSCKGYW 850



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 190/370 (51%), Gaps = 28/370 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIK 68
           N+++A +++ R  L DA+++FD++   DVVS+N I+ S   L    V  A + F R+  +
Sbjct: 166 NALVAMYSRCR-SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV--ALEMFSRMTNE 222

Query: 69  -----DTASWNTMI--SGFVQKKNMAKARDLFLAMPE--KNSVSWSAMISGYIECGQLDK 119
                D  +   ++     +   ++ K    F    E  +N    + ++  Y +CG +D+
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE 282

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVE 175
           A  +F    VK VV+W AM++GY + G+ + A +LF++M  +    ++VTW+A I+GY +
Sbjct: 283 ANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL------ 229
                + L + R M+  GI+PN  +L SVL GC+ + +L  GK++H    K P+      
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNG 402

Query: 230 -CKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
              +   +  LI MY KC  ++ A  +F  L  + +DVVTW  MI GY+QHG   KAL L
Sbjct: 403 HGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALEL 462

Query: 287 FDKMKDEG--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
             +M +E    +P++ T    L+AC     + +G Q     + +   A       C++D+
Sbjct: 463 LSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDM 522

Query: 345 LGRAGKLVEA 354
             + G + +A
Sbjct: 523 YAKCGSISDA 532



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 21/273 (7%)

Query: 58  AFDFFQRLPIKDTA--SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS---------- 105
           A    +R P  D     WN++I  +       K   LF  M   +S+SW+          
Sbjct: 78  AVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLM---HSLSWTPDNYTFPFVF 134

Query: 106 ---AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
                IS  + CG+   A+ L     + +V    A+++ Y +   +  A K+FDEM   +
Sbjct: 135 KACGEISS-VRCGESAHALSLV-TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWD 192

Query: 163 LVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           +V+WN++I  Y +    +  L++  RM    G RP+  +L +VL  C+ L +  LGKQ+H
Sbjct: 193 VVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLH 252

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
                S + ++      L+ MY KCG +++A  +F  +  KDVV+WNAM++GY+Q G+ E
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            A+RLF+KM++E +K D +T+ A +      GL
Sbjct: 313 DAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 14/235 (5%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +IS Y+  G +  A  L    P  +  +  WN++I  Y +N  A   L L  +M  L   
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   V   C  +SS++ G+  H L   +    +      L++MY +C  L DA K+
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 314
           F E+   DVV+WN++I  YA+ GK + AL +F +M +E G +PD+IT V +L  C   G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 315 VDLGIQYF-----DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             LG Q         M+ +  +        C+VD+  + G + EA  +   M  K
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVG------NCLVDMYAKCGMMDEANTVFSNMSVK 293


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/580 (38%), Positives = 333/580 (57%), Gaps = 21/580 (3%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPD---VVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++N+VL    ++R  +++ Q +   + +      V     L    +  D +  A   F  
Sbjct: 60  DYNTVLNECLRKRA-IREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDV 118

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMI------SGYIEC 114
           +P ++  SW  MIS + Q+   ++A  LF+ M     E N  +++ ++      SG++  
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLG 178

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
            Q+     + K+     V   ++++  Y K GK+  A  +F  +P +++V+  A+I+GY 
Sbjct: 179 RQIHS--HIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYA 236

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +    E+ L+L R +   G++ N  + +SVL   S L++L  GKQVH  + +S +     
Sbjct: 237 QLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVV 296

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               LI MY KCG+L  A ++F  +  + V++WNAM+ GY++HG+G + L LF+ M DE 
Sbjct: 297 LQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDEN 356

Query: 295 -MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKL 351
            +KPDS+T +A+L  C+H GL D G+  F  M +   I+ +PD  HY C+VD+LGRAG++
Sbjct: 357 KVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSG-KISVQPDSKHYGCVVDMLGRAGRV 415

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
             A + +KKMPF+P  AI+G LL AC VH  LD+ EF    L  + P NA G YV L+N+
Sbjct: 416 EAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENA-GNYVILSNL 474

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA+  +W+DV  +R  M +  V K PG SWIE+  V+H F + D  HP    +  K++EL
Sbjct: 475 YASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQEL 534

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R K AGYVPDL   LH V EE KE++LL HSEKLA+ FGLI  P   PIRV KNLR+C
Sbjct: 535 SARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRIC 594

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH   KY S I  RE+ +RD  RFH    G CSCGDYW
Sbjct: 595 VDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 1/170 (0%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+  N    ++VL  C    +++ G++VH  + K+         T LI  Y KC  L DA
Sbjct: 53  GLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDA 112

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             +F  +  ++VV+W AMIS Y+Q G   +AL LF +M   G +P+  TF  +L +C  +
Sbjct: 113 RHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGS 172

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               LG Q   S +      A     + ++D+  + GK+ EA  + + +P
Sbjct: 173 SGFVLGRQ-IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP 221


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/469 (43%), Positives = 300/469 (63%), Gaps = 3/469 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + ++  Y + G +  A ++F   P +S+V+ TAMI+ Y K G V+ A  LFD M  +++V
Sbjct: 163 TGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIV 222

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           +WN MI GY ++ +  D L L + ++  G  +P+  ++ + L  CS + +L+ G+ +H  
Sbjct: 223 SWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVF 282

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V  S +  +    T LI MY KCG LE+A  +F +  RKD+V WNAMI+GYA HG  + A
Sbjct: 283 VNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDA 342

Query: 284 LRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           LRLFD+M+   G++P  ITF+  L AC HAGLV+ GIQ F+SM  +YGI  K +HY C+V
Sbjct: 343 LRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLV 402

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            LLGRAG+L  A ++IK M  +    ++ ++L +C++H    L +  A  L   N +N+ 
Sbjct: 403 SLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNS- 461

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G YV L+NIYA +  ++ VA++R  MKE  +VK PG S IE+   VHEFR+GDR H +  
Sbjct: 462 GIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSK 521

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I+  L+++ +R+K  GYVP+    LH + E  KE+ L  HSE+LAIA+GLI    G+P+
Sbjct: 522 EIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPL 581

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++FKNLRVC DCH  TK IS I  R+I++RD  RFHHF DG+CSC D+W
Sbjct: 582 KIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 110/256 (42%), Gaps = 37/256 (14%)

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y   GK+  +  LF +    +L  + A I     N   +    L   ++   I PN  +
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF---- 256
            SS+L  CS  S    GK +H  V K  L  D    T L+ +Y K GD+  A K+F    
Sbjct: 131 FSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186

Query: 257 -------------------LEIQR--------KDVVTWNAMISGYAQHGKGEKALRLFDK 289
                              +E  R        +D+V+WN MI GY+QHG    AL LF K
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246

Query: 290 MKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +  +G  KPD IT VA L AC+  G ++ G ++    VN   I       T ++D+  + 
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKC 305

Query: 349 GKLVEAVDLIKKMPFK 364
           G L EAV +    P K
Sbjct: 306 GSLEEAVLVFNDTPRK 321


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/622 (35%), Positives = 351/622 (56%), Gaps = 57/622 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  K +V++N ++ G+ K  G  ++A +LF ++     QP   ++  ML  + + S+DV+
Sbjct: 204 MPTKDSVSFNVMITGYTKY-GFREEALKLFMQMRNMDFQPSGFTFAAMLG-MSVGSEDVI 261

Query: 57  AAFDFFQR---LPIKDTASW-----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
               F Q+   L IK +  W     N ++  + +   +  A++LF  MPE + VS++ +I
Sbjct: 262 ----FGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIII 317

Query: 109 SGYIECGQLDKAVELFK---------------------------------------VAPV 129
           +GY   GQ +K+ +LFK                                          V
Sbjct: 318 TGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAV 377

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
             V    A++  Y K  K + A ++F  +  +N V W A+I+ YV+  + E+ LK+ + M
Sbjct: 378 SEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEM 437

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
               +  + ++ +S L   ++L+S+ LGKQ+H  V +  L     + + L+ MY  CG +
Sbjct: 438 NRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSM 497

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +DA ++F E+  +++V WNA+IS Y+Q+G  E     F  M + G+ PDS++F+++L AC
Sbjct: 498 KDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTAC 557

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H GLV+  + YF+SM   Y +  +  HY  M+D+L R+G+  EA +LI +MPF+P   +
Sbjct: 558 SHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVM 617

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           + ++L++CR+HK  DLA+ AA  LF ++    A  YV ++NIYA   KW++ A+++ +M+
Sbjct: 618 WSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMR 677

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           E  V K+  YSW+E+   VH F + DR HP+   I  K+  L + M   GY PD    L 
Sbjct: 678 ERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQ 737

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            V EE+K + L +HSE+LAIAF LI  P G+PI + KNLR C DCH A K IS I  REI
Sbjct: 738 NVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREI 797

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
            VRD++RFHHF+DG+CSCGDYW
Sbjct: 798 TVRDSSRFHHFRDGSCSCGDYW 819



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 185/408 (45%), Gaps = 48/408 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W  ++ G++ Q  + K+A  L+ ++ +  V   +I  + +L   DD     +
Sbjct: 103 MFSRNEVSWTIMIGGYS-QNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKE 161

Query: 61  FFQR----LPIKDTAS---WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             Q     +    +AS   +N+++  + +   +  A  LF  MP K+SVS++ MI+GY +
Sbjct: 162 VLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTK 221

Query: 114 CGQLDKAVELF---------------------------------------KVAPVKSVVA 134
            G  ++A++LF                                       K + V  +  
Sbjct: 222 YGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFV 281

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A++  Y K   +DLA+ LFDEMP  + V++N +I GY  N   E    L + + G   
Sbjct: 282 ANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSF 341

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
                  +++L   +   +L +G+Q H     +    +      L+ MY KC   EDA +
Sbjct: 342 DRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANR 401

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  +  ++ V W A+IS Y Q G  E+AL++F +M  E +  D  TF + L A  +   
Sbjct: 402 IFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLAS 461

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V LG Q   S++   G+ +     + +VD+    G + +A+++ K+MP
Sbjct: 462 VSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP 508



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 151/310 (48%), Gaps = 40/310 (12%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           P++  +N  L   L+ ++ +  A   F  +P ++T+S N M+SG+V+ +N+ +AR+LF +
Sbjct: 44  PEISRFNFKLK-DLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFES 102

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP--------------------- 128
           M  +N VSW+ MI GY +  Q  +A  L+       V P                     
Sbjct: 103 MFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEV 162

Query: 129 ------------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
                         S++ + +++  Y K   +D+A +LF EMPTK+ V++N MI GY + 
Sbjct: 163 LQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKY 222

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
            + E+ LKL   M  +  +P+  + +++L        +  G+Q+H L  K+    D    
Sbjct: 223 GFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVA 282

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+  Y K   ++ A  LF E+   D V++N +I+GYA +G+ EK+  LF +++     
Sbjct: 283 NALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFD 342

Query: 297 PDSITFVALL 306
             +  F  +L
Sbjct: 343 RKNFPFATML 352



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 173/403 (42%), Gaps = 50/403 (12%)

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           +   Q+ KA +LF   P ++  +   M+SGY+K   +  A +LF+ M ++N V+W  MI 
Sbjct: 57  VRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIG 116

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +N+  ++   L   M   G++P+  + +++L G    ++L+   Q+H  + +     
Sbjct: 117 GYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSA 176

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                  L+  YCK   L+ A +LF E+  KD V++N MI+GY ++G  E+AL+LF +M+
Sbjct: 177 SLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMR 236

Query: 292 DEGMKPDSITFVALL-----------------LACNHA------------------GLVD 316
           +   +P   TF A+L                 LA   +                    +D
Sbjct: 237 NMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYID 296

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTL 373
           L    FD M    G++     Y  ++      G+  ++ DL K++    F  +   F T+
Sbjct: 297 LAKNLFDEMPELDGVS-----YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATM 351

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LS   +   L +              +       L ++YA  +K++D  RI  ++   N 
Sbjct: 352 LSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNS 411

Query: 434 VKMPGYSWIEVGTVVHE-----FRSGDR--VHPELVSIHEKLK 469
           V       I V    HE     F+  +R  VH +  +    LK
Sbjct: 412 VPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLK 454


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 340/567 (59%), Gaps = 9/567 (1%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK- 68
           ++A +A  R ++ DA+ LFDK+  PD V++N+++     N   DD +  F+  +   +K 
Sbjct: 162 LIAMYASCR-RIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKP 220

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF 124
           D+    T++S      N++  R +   + +     +S   +A+I+ Y  CG +D A +++
Sbjct: 221 DSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIY 280

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                K ++  TAM+SGY K G V  A  +FD+M  ++LV W+AMI+GY E+   ++ LK
Sbjct: 281 DGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALK 340

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L   M+     P+  ++ SV+  CSH+ +L     +H  V +S   +  +    LI MY 
Sbjct: 341 LFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYA 400

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG+L  A ++F  + RK+V++W++MI+ +A HG  + A++LF +MK+  ++P+ +TF+ 
Sbjct: 401 KCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIG 460

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC HAGLV+ G + F SM+N++GI+   +HY CMVDL  RA  L +A++LI+ MPF 
Sbjct: 461 VLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFA 520

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P   I+G+L+SAC+VH   +L EFAA  L  L P +  G  V L+NIYA  K+W+DV  I
Sbjct: 521 PNVIIWGSLMSACQVHGEAELGEFAAKRLLELEP-DHDGALVVLSNIYAKEKRWNDVGLI 579

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R SM    + K    S IE+   VH F   DR H +   I+EKL E+  ++KL GY P  
Sbjct: 580 RKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPST 639

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
              L  + EE K++L+L+HSEKLA+ +GLI     + IR+ KNLR+C DCH   K +S +
Sbjct: 640 SGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKV 699

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
            + EI+VRD TRFHH   G CSC DYW
Sbjct: 700 YQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 66/327 (20%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + +I+ Y  C ++  A  LF        VAW  +I GY + G  D A +LF++M + ++ 
Sbjct: 160 TGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDM- 218

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
                                         +P++  L +VL  C H  +L  G+ +H+ V
Sbjct: 219 ------------------------------KPDSVILCTVLSACGHAGNLSYGRTIHEFV 248

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLE-------------------------------DAC 253
             +    D+   T LI+MY  CG ++                               DA 
Sbjct: 249 KDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDAR 308

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F ++  +D+V W+AMISGYA+  + ++AL+LFD+M  +   PD IT ++++ AC+H G
Sbjct: 309 FIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVG 368

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            +     +  + V+  G          ++D+  + G LV+A ++ + MP K   + + ++
Sbjct: 369 ALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVIS-WSSM 426

Query: 374 LSACRVHKRLDLA--EFAAMNLFNLNP 398
           ++A  +H   D A   F  M   N+ P
Sbjct: 427 INAFAMHGNADSAIKLFRRMKEVNIEP 453



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 10/211 (4%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL---LRMMIGLGIRPNASSLSSVLLGCSH 210
           +F ++P  +    N ++     +S+ E  + L   LR +    +  +  S  S+L   S 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFAL--DRFSFPSLLKAVSK 133

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           +S+   G ++H L  K     D    T LI+MY  C  + DA  LF ++   D V WN +
Sbjct: 134 VSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMI 193

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I GY Q+G  + ALRLF+ M+   MKPDS+    +L AC HAG +  G +     V D G
Sbjct: 194 IDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG-RTIHEFVKDNG 252

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            A      T ++++    G    A+DL +K+
Sbjct: 253 YAIDSHLQTALINMYANCG----AMDLARKI 279



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 104/230 (45%), Gaps = 29/230 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPI 67
           N+ L     + G L  A+E+F+ +P+ +V+S++ M++   +  N+D  +  F   + + I
Sbjct: 392 NNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNI 451

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAV 121
           + +  ++  ++        + +   LF +M  ++ +S     +  M+  Y     L KA+
Sbjct: 452 EPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAI 511

Query: 122 ELFKVAP-VKSVVAWTAMISGYMKFGKVDLAE----KLFDEMPTKN--LVTWNAMIAGYV 174
           EL +  P   +V+ W +++S     G+ +L E    +L +  P  +  LV  + + A   
Sbjct: 512 ELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAK-- 569

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           E  W + GL + + M   GI    +S           S +++  QVH  +
Sbjct: 570 EKRWNDVGL-IRKSMSYKGISKEKAS-----------SRIEINNQVHMFM 607


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/561 (40%), Positives = 327/561 (58%), Gaps = 17/561 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRL----PIKDTASWNT 75
           L  AQ +FD   +PD   +N+M+   SC    SD+   +   +QR+       +  ++ +
Sbjct: 94  LPYAQIVFDGFDRPDTFLWNLMIRGFSC----SDEPERSLLLYQRMLCCSAPHNAYTFPS 149

Query: 76  MISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           ++        + +   +   +     E +  + +++I+ Y   G    A  LF   P   
Sbjct: 150 LLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPD 209

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            V+W ++I GY K GK+D+A  LF +M  KN ++W  MI+GYV+    ++ L+L   M  
Sbjct: 210 AVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQN 269

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             + P+  SL++ L  C+ L +L+ GK +H  + K+ +  D+     LI MY KCGD+ +
Sbjct: 270 SDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGE 329

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F  IQRK V  W A+ISGYA HG G +A+  F +M+  G+KP+ ITF  +L AC++
Sbjct: 330 ALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSY 389

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLV+ G   F +M  DY +    +HY C+VDLL RAG L EA   I++MP KP   I+G
Sbjct: 390 TGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWG 449

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL ACR+HK ++L E     L  ++P +  G YV  ANI+A  KKWD  A  R  MKE 
Sbjct: 450 ALLKACRIHKNIELGEEIGEILIAIDPYH-GGRYVHKANIHAMGKKWDKAAETRRLMKEQ 508

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHA 490
            V K+PG S I +    HEF +GDR HPE+  I  K K + ++++  GYVP+  +  L  
Sbjct: 509 GVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDL 568

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V ++ +E ++  HSEKLAI +GLIK   GT IR+ KNLRVC DCH+ TK IS I KR+I+
Sbjct: 569 VDDDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIV 628

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           +RD TRFHHF+DG CSCGDYW
Sbjct: 629 MRDRTRFHHFRDGKCSCGDYW 649



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 45/234 (19%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED----ACKLFLEIQRKDVVTWNAMISG 273
           KQ+H  + K+ L +D+ A+T  +S  C      D    A  +F    R D   WN MI G
Sbjct: 60  KQIHARMLKTGLIQDSYAITKFLSC-CISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 118

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG---- 318
           ++   + E++L L+ +M       ++ TF +LL AC+           HA +  LG    
Sbjct: 119 FSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYEND 178

Query: 319 IQYFDSMVNDYGIAA-------------KPD--HYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           +   +S++N Y                 KPD   +  ++    +AGK+  A+ L +KM  
Sbjct: 179 VYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVE 238

Query: 364 KPQPAIFGTLLSA---CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
           K     + T++S      +HK   L  F  M   ++ P N     V LAN  +A
Sbjct: 239 K-NAISWTTMISGYVQAGMHKEA-LQLFHEMQNSDVEPDN-----VSLANALSA 285


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/551 (39%), Positives = 320/551 (58%), Gaps = 9/551 (1%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           L+ K+P   + S  + +  +  +S    +    F  +  +D  SWNT++ G  ++    +
Sbjct: 94  LYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHE 153

Query: 89  ARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMIS 140
           A      M  +    +S + S ++  + EC  + + +E+    F+      V   +++I 
Sbjct: 154 ALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLID 213

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y    + D + K+FD +P ++ + WN+++AG  +N   E+ L + R M+  G+RP   +
Sbjct: 214 MYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVT 273

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            SS++  C +L+SL+ GKQ+H  V       +    + LI MYCKCG++  A  +F ++ 
Sbjct: 274 FSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS 333

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             DVV+W AMI GYA HG   +AL LF++M+    KP+ ITF+A+L AC+HAGLVD G +
Sbjct: 334 SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWK 393

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           YF SM N YGI    +H+  + D LGRAG+L EA + I KM  KP  +++ TLL ACRVH
Sbjct: 394 YFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVH 453

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           K   LAE  A  +  L P  + G +V L+N+Y+A  +W++ A +R SM++  + K P  S
Sbjct: 454 KNTMLAEEVAKKIMELEP-RSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACS 512

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
           WIEV + +H F + DR HP    I + L    ++M   G+VP+ E     + EE K  +L
Sbjct: 513 WIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVL 572

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLAI FG+I  P GT IRV KNLRVC DCH  TK+IS +  REI+VRD  RFHHF
Sbjct: 573 CGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHF 632

Query: 561 KDGTCSCGDYW 571
           KDG CSCGD+W
Sbjct: 633 KDGNCSCGDFW 643



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 53/246 (21%)

Query: 185 LLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            LRM      R +  +SL + L  C+ L    LG  +H L  +S    D      L+++Y
Sbjct: 36  FLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLY 95

Query: 244 CK--CGDL-----------------EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           CK  C  L                 E   K+F E+  +DVV+WN ++ G A+ G+  +AL
Sbjct: 96  CKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEAL 155

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY--------FD-------SMVNDY 329
               KM  EG +PDS T   +L        V  G++         FD       S+++ Y
Sbjct: 156 GFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMY 215

Query: 330 GIAAKPDHYTCMVDLL---------------GRAGKLVEAVDLIKKM---PFKPQPAIFG 371
               + D+   + D L                + G + EA+ + ++M     +P P  F 
Sbjct: 216 ANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFS 275

Query: 372 TLLSAC 377
           +L+  C
Sbjct: 276 SLIPVC 281



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 128/307 (41%), Gaps = 38/307 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + V+  + WNS+LAG A Q G +++A  +F ++ Q  V    +  S ++    + +A+  
Sbjct: 231 LPVRDHILWNSLLAGCA-QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGN-LASLR 288

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F ++L          +  GF                 E N    S++I  Y +CG++  A
Sbjct: 289 FGKQLHAY------VICGGF-----------------EDNVFISSSLIDMYCKCGEISIA 325

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM----PTKNLVTWNAMIAGYVEN 176
             +F       VV+WTAMI GY   G    A  LF+ M       N +T+ A++      
Sbjct: 326 HCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHA 385

Query: 177 SWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
              + G K  + M    GI P     +++         L    + +  + K  + K T +
Sbjct: 386 GLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELD---EAYNFISKMQI-KPTAS 441

Query: 236 LTPLISMYCKCGD----LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           +   +   C+        E+  K  +E++ + + +   + + Y+  G+  +A  L + M+
Sbjct: 442 VWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMR 501

Query: 292 DEGMKPD 298
            +GMK D
Sbjct: 502 KKGMKKD 508


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/571 (40%), Positives = 339/571 (59%), Gaps = 36/571 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+V+  + +  G +++A+++FD + +   DVVS+NIMLS  + N D    A   +QR+ +
Sbjct: 286 NAVMTMYGRC-GAVEEARKVFDAMDEALRDVVSWNIMLSAYVHN-DRGKDAIQLYQRMQL 343

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
           + D  ++ +++S     +++   R L   +     EKN +  +A++S Y +CG   +A  
Sbjct: 344 RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 403

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F     +S+++WT +IS Y++   V  A  LF +M                        
Sbjct: 404 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQM------------------------ 439

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L+L +      ++P+A +  ++L  C+ +S+L+ GK V +      L  D    T ++++
Sbjct: 440 LELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNL 499

Query: 243 YCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           Y KCG++E+  ++F  +  R DV  WNAMI+ YAQ G+  +AL+LF +M+ EG++PDS +
Sbjct: 500 YGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFS 559

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           FV++LLAC+H GL D G  YF SM  +Y  +     H+ C+ DLLGR G+L EA + ++K
Sbjct: 560 FVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEK 619

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           +P KP    + +LL+ACR H+ L  A+  A  L  L P  A G YV L+NIYA ++KW  
Sbjct: 620 LPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATG-YVALSNIYAELQKWHA 678

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA++R  M E  V K  G S IE+G  +H+F +GD  HP    I E+L +L  +MK  GY
Sbjct: 679 VAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGY 738

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPD +  LH V E+ KE+LL  HSE+LAIA GLI  PLGTP+RV KNLRVC DCH ATK 
Sbjct: 739 VPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKL 798

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I  R+I+VRD TRFH FKDG CSC DYW
Sbjct: 799 ISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 2/231 (0%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+  FD +  +NL +W  ++A +  +  +++ L+ L  M   G+RP+A +  + L  C  
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNA 269
             SL+ G ++HQ+V  S L  D      L++MY KCG L  A ++F +++R ++V++W+ 
Sbjct: 158 PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 217

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           M   +A HG   +ALR F  M   G+K      V +L AC+   LV  G +   S +   
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RLIHSCIALS 276

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           G  ++      ++ + GR G + EA  +   M    +  +   ++ +  VH
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVH 327



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLED 251
            +R   ++ + +L  C+   +L  G+++H L  K  L      L   ++SMY  C    D
Sbjct: 38  AVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGD 97

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A   F  ++++++ +W  +++ +A  G+ ++ LR  ++M+ +G++PD++TF+  L +C  
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              +  GI+    MV D  +   P     ++++  + G L  A  +  KM
Sbjct: 158 PESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 206


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 334/574 (58%), Gaps = 8/574 (1%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V+  V WN+++ G+A Q G L +A ELF  +PQ + V +N ++S +  N   +  A + F
Sbjct: 144 VRNVVTWNTMIGGYA-QAGHLDNATELFGLMPQWNEVCWNALISGMGRNRR-LPDALELF 201

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           Q LP +D  SW  MI G V   ++ +A DLF  MP  + V W+A+++ +   G L +A +
Sbjct: 202 QALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARD 261

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAED 181
           LF   P+K   A  AMI+ Y   G++  A+ LFD     +++++WNA++A + +N  A  
Sbjct: 262 LFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQ 321

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ---LVFKSPLCKDTTALTP 238
            L +   M   GI P+  S  S L  C+ L++L+ GK +H+   L  +  +  + +  T 
Sbjct: 322 ALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFVEASLATA 381

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L++ Y KCG L++A  LF  +   D +  N+M+  YAQ G+  +A  LF +    G+ PD
Sbjct: 382 LVNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQSGRAGEAADLFQRAILSGIHPD 441

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           ++TFV+++ AC+HAGL+DLG +YF S+V D+ +A    HYTCMVDLL R G L++  DL+
Sbjct: 442 AVTFVSMVSACSHAGLLDLGHRYFLSLVGDFALAPHAAHYTCMVDLLARTGHLMDGEDLL 501

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
             MPF+P+   + +LL+ CR H  +      A    N NP   +  YV L+ +Y A  K 
Sbjct: 502 DAMPFQPEYTAWKSLLAGCRTHGDVGRGARLARRATNANPV-CSSPYVLLSRLYDAAGKH 560

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            D   +R +M    + K  G S I +    HEF +G + HPE+ +I ++L  L  +M+ A
Sbjct: 561 GDGISVRKAMDARRLRKPAGLSSITIKGRAHEFVAGGKNHPEISAILDELHSLNAKMREA 620

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV-PLGTPIRVFKNLRVCGDCHRA 537
           GYVPD    LH   +E KEQ L FHSEKLA+ FG+I       P+ V KNLR+C DCH A
Sbjct: 621 GYVPDTSNVLHDFDDEEKEQSLSFHSEKLAVVFGMISTRGRSDPLFVVKNLRMCTDCHTA 680

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           TK++S I KR I VRD  RFHHF+DG C+C D+W
Sbjct: 681 TKFMSRIAKRAITVRDAHRFHHFQDGACACADFW 714



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 133/273 (48%), Gaps = 19/273 (6%)

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAE 152
           F ++    + S + M++ Y + G LD A   F   P K VV+W  M+SGY ++G    A+
Sbjct: 15  FDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGMLSGYARYGSFRDAK 74

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
             FDEMP KN V++N +I+ +       +   L   M    IR +A++ + ++ G +   
Sbjct: 75  LFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSM---KIR-DAATWNVLIAGYTQRC 130

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
              L     ++  ++P+ ++      +I  Y + G L++A +LF  + + + V WNA+IS
Sbjct: 131 ---LCTHAREIFDRAPV-RNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCWNALIS 186

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGI 331
           G  ++ +   AL LF  +       D ++++A++  C H+G +      F  M + D  I
Sbjct: 187 GMGRNRRLPDALELFQALPFR----DMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVVI 242

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                 +T +V     +G L EA DL   +P K
Sbjct: 243 ------WTAIVTAFAHSGFLQEARDLFDAIPIK 269



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY +CG + DA   F  I+     + N M++ YAQ+G  + A R FD+  ++    D ++
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNK----DVVS 56

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +  +L      G       +FD M     ++     Y  ++    R G L EA +L   M
Sbjct: 57  WNGMLSGYARYGSFRDAKLFFDEMPYKNTVS-----YNTLISAFARQGNLAEARNLFNSM 111

Query: 362 PFK 364
             +
Sbjct: 112 KIR 114


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 312/520 (60%), Gaps = 10/520 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECG 115
            F  +P +D  SWN+++SG   +  +    + F  M      + N V+  +++S     G
Sbjct: 196 LFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMG 255

Query: 116 QLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            LD+   L     K+          ++I+ Y K G +D A +LF+EMP ++LV+WN+M+ 
Sbjct: 256 ALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVV 315

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            +  N +AE G+ L  +M   GI P+ +++ ++L  C+     +  + +H  + +     
Sbjct: 316 IHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNA 375

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D    T L+++Y K G L  +  +F EI+ +D + W AM++GYA H  G +A++LFD M 
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMV 435

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG++ D +TF  LL AC+H+GLV+ G +YF+ M   Y +  + DHY+CMVDLLGR+G+L
Sbjct: 436 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 495

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            +A +LIK MP +P   ++G LL ACRV+  ++L +  A  L +L+P++    Y+ L+NI
Sbjct: 496 EDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN-YIMLSNI 554

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           Y+A   W   +++R  MKE  + + PG S+IE G  +H F  GD++HP    IH KL+EL
Sbjct: 555 YSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEEL 614

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            +++  AG  P  EF LH + EEVK  ++  HSEKLAIAFGL+    G P+ + KNLR+C
Sbjct: 615 IRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRIC 674

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K+ S +EKR II+RD+ RFHHF DG CSC DYW
Sbjct: 675 GDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLRMMIGLGIRP 196
           ++S Y K G  + A++LFDEMP ++LV+WN++++G     +    L    RM    G +P
Sbjct: 180 LVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 239

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  +L SV+  C+ + +L  GK +H +V K  +      +  LI+MY K G L+ A +LF
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 299

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E+  + +V+WN+M+  +  +G  EK + LF+ MK  G+ PD  T VALL AC   GL  
Sbjct: 300 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-G 358

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              +   + ++  G  A     T +++L  + G+L  + D+ +++
Sbjct: 359 RQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 403



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S + S++   S  +S+     +H  V KS    D      L+SMY K G  EDA +LF E
Sbjct: 140 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 199

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 317
           +  +D+V+WN+++SG +  G     L  F +M+ E G +P+ +T ++++ AC   G +D 
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +    +V   G++ K      ++++ G+ G L  A  L ++MP +       +  S  
Sbjct: 260 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS----LVSWNSMV 314

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +H     AE   M+LFNL     AG     A + A ++   D  
Sbjct: 315 VIHNHNGYAE-KGMDLFNL--MKRAGINPDQATMVALLRACTDTG 356


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/519 (42%), Positives = 314/519 (60%), Gaps = 12/519 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV--SWSAMIS---GYIECGQ 116
           F  L  +   SW ++ISG+ Q     +A  +F  M   N V   W A++S    Y +   
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM-RNNGVKPDWIALVSILRAYTDVDD 270

Query: 117 LDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           L++   +     K+          ++ + Y K G V +A+  FD+M T N++ WNAMI+G
Sbjct: 271 LEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISG 330

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N  AE+ + L   MI   I+P++ ++ S +L  + + SL+L + +   V KS    D
Sbjct: 331 YAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSD 390

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI MY KCG +E A ++F     KDVV W+AMI GY  HG+G +A+ L+  MK 
Sbjct: 391 IFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQ 450

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+ P+ +TF+ LL ACNH+GLV  G + F  M  D+ I  + +HY+C+VDLLGRAG L 
Sbjct: 451 AGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLG 509

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA   I K+P +P  +++G LLSAC++++ + L E+AA  LF+L+P N  G YVQL+N+Y
Sbjct: 510 EACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNT-GHYVQLSNLY 568

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A+   WD VA +R+ M+E  + K  GYS IE+   +  F  GD+ HP    I ++L+ LE
Sbjct: 569 ASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLE 628

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           +R+K  G+VP  E  LH +  E KE+ L FHSE++A+A+GLI    GT +R+ KNLR C 
Sbjct: 629 RRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACV 688

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +CH A K IS + +REIIVRD  RFHHFKDG CSCGDYW
Sbjct: 689 NCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 157/333 (47%), Gaps = 29/333 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTMIS 78
           G++  A++LFD+   PDV  +N ++     N+   D V  + + +   +           
Sbjct: 102 GQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHP--------D 153

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           GF     +    +L            S +I G           ++ K      V     +
Sbjct: 154 GFTFPYVLKACTELL-------DFGLSCIIHG-----------QIIKYGFGSDVFVQNGL 195

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++ Y K G + +A+ +FD +  + +V+W ++I+GY +N  A + L++   M   G++P+ 
Sbjct: 196 VALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDW 255

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +L S+L   + +  L+ G+ +H  V K  L  +   L  L + Y KCG +  A   F +
Sbjct: 256 IALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQ 315

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           ++  +V+ WNAMISGYA++G  E+A+ LF  M    +KPDS+T  + +LA    G ++L 
Sbjct: 316 MKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELA 375

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            Q+ D  V+     +     T ++D+  + G +
Sbjct: 376 -QWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSV 407



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 96/173 (55%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +++G    G++  A KLFDE    ++  WNA+I  Y  N+   D +++ R M   G+ 
Sbjct: 92  TKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVH 151

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   VL  C+ L    L   +H  + K     D      L+++Y KCG +  A  +
Sbjct: 152 PDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVV 211

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           F  +  + +V+W ++ISGYAQ+GK  +ALR+F +M++ G+KPD I  V++L A
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRA 264



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 48/317 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV-------- 55
           +T V+W S+++G+A Q GK  +A  +F ++    V    I L  IL    DV        
Sbjct: 218 RTIVSWTSIISGYA-QNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRS 276

Query: 56  -------------------VAAF-----------DFFQRLPIKDTASWNTMISGFVQKKN 85
                              + AF            FF ++   +   WN MISG+ +  +
Sbjct: 277 IHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGH 336

Query: 86  MAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAV----ELFKVAPVKSVVAWTA 137
             +A +LF  M  +N    SV+  + +    + G L+ A      + K      +   T+
Sbjct: 337 AEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTS 396

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G V+ A ++FD    K++V W+AMI GY  +    + + L  +M   G+ PN
Sbjct: 397 LIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPN 456

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   +L  C+H   ++ G ++   +    +       + ++ +  + G L +AC   +
Sbjct: 457 DVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIM 516

Query: 258 EIQ-RKDVVTWNAMISG 273
           +I     V  W A++S 
Sbjct: 517 KIPIEPGVSVWGALLSA 533



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  +  S L  +   +T L++     G +  A KLF E    DV  WNA+I  Y+++ 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPDH 337
                + ++  M+  G+ PD  TF  +L AC    L+D G+       +  YG  +    
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGLSCIIHGQIIKYGFGSDVFV 191

Query: 338 YTCMVDLLGRAGKL 351
              +V L  + G +
Sbjct: 192 QNGLVALYAKCGHI 205


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/469 (43%), Positives = 299/469 (63%), Gaps = 3/469 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + ++  Y + G +  A ++F   P +S+V+ TAMI+ Y K G V+ A  LFD M  +++V
Sbjct: 165 TGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIV 224

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           +WN MI GY ++ +  D L L + ++  G  +P+  ++ + L  CS + +L+ G+ +H  
Sbjct: 225 SWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVF 284

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V  S +  +    T LI MY KCG LE+A  +F +  RKD+V WNAMI+GYA HG  + A
Sbjct: 285 VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDA 344

Query: 284 LRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           LRLF++M+   G++P  ITF+  L AC HAGLV+ GI+ F+SM  +YGI  K +HY C+V
Sbjct: 345 LRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLV 404

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            LLGRAG+L  A + IK M       ++ ++L +C++H    L +  A  L  LN  N+ 
Sbjct: 405 SLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNS- 463

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G YV L+NIYA++  ++ VA++R  MKE  +VK PG S IE+   VHEFR+GDR H +  
Sbjct: 464 GIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSK 523

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I+  L+++ +R+K  GYVP+    L  + E  KEQ L  HSE+LAIA+GLI    G+P+
Sbjct: 524 EIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPL 583

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++FKNLRVC DCH  TK IS I  R+I++RD  RFHHF DG+CSCGD+W
Sbjct: 584 KIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  AQ++FD++P+  +VS   M++C      +V AA   F  +  +D  SWN MI G+
Sbjct: 175 GDVVSAQKVFDRMPERSLVSSTAMITC-YAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233

Query: 81  VQKKNMAKARDLFLAM-----PEKNSVSWSAMISGYIECGQLDKA--VELF-KVAPVK-S 131
            Q      A  LF  +     P+ + ++  A +S   + G L+    + +F K + ++ +
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   T +I  Y K G ++ A  +F++ P K++V WNAMIAGY  + +++D L+L   M G
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQG 353

Query: 192 L-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYCKCGDL 249
           + G++P   +    L  C+H   +  G ++ + + +    K        L+S+  + G L
Sbjct: 354 ITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQL 413

Query: 250 EDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
           + A +    +    D V W++++     HG
Sbjct: 414 KRAYETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 109/256 (42%), Gaps = 37/256 (14%)

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y   GK+  +  LF +    +L  + A I     N   +    L   ++   I PN  +
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF---- 256
            SS+L  CS  S    GK +H  V K  L  D    T L+ +Y K GD+  A K+F    
Sbjct: 133 FSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 257 -------------------LEIQR--------KDVVTWNAMISGYAQHGKGEKALRLFDK 289
                              +E  R        +D+V+WN MI GYAQHG    AL LF K
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 290 MKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +  EG  KPD IT VA L AC+  G ++ G ++    V    I       T ++D+  + 
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKC 307

Query: 349 GKLVEAVDLIKKMPFK 364
           G L EAV +    P K
Sbjct: 308 GSLEEAVLVFNDTPRK 323


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 327/557 (58%), Gaps = 23/557 (4%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN VL+G+ + + + ++++ LF ++ +           C+  NS  +V       +L 
Sbjct: 203 VTWNVVLSGYNRFK-RYEESKRLFIEMEKK--------CECVSPNSVTLVLMLSACSKL- 252

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            KD      + + ++++            + E N +  +A+I  +  CG++D A  +F  
Sbjct: 253 -KDLVGGKCIYNKYIKE-----------GIVEPNLILENALIDMFASCGEMDAARGVFDE 300

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
              + V++WT++++G+    ++DLA K FD+MP ++ V+W AMI GY+  +  ++ L L 
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R M    ++P+  ++ S+L  C+HL +L+LG+     + K+ +  DT     LI MY KC
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G++E A K+F E+Q+KD  TW AMI G A +G GE+AL +F  M +  + PD IT++ ++
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVM 480

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC H GLV  G  +F +M   +GI     HY CMVDLLGRAG L EA+++I  MP KP 
Sbjct: 481 CACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPN 540

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G+LL ACRVHK + LAE AA  +  L P N A  YV L NIYAA KKW ++  +R 
Sbjct: 541 SIVWGSLLGACRVHKNVQLAEMAANEILELEPENGA-VYVLLCNIYAACKKWKNLHNVRK 599

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M E  + K+PG S +E+  +V+EF +GD+ HP+   I+ KL+ +++ +  AGY PD   
Sbjct: 600 MMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSE 659

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
               VGEE KE  L  HSEKLAIA+ LI    G  IR+ KNLR+C DCH     +S +  
Sbjct: 660 VFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYN 719

Query: 547 REIIVRDTTRFHHFKDG 563
           RE+IVRD TRFHHF+ G
Sbjct: 720 RELIVRDKTRFHHFRHG 736



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 164/390 (42%), Gaps = 70/390 (17%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASW 73
            K+ G +  A+++FD+IPQP V  +N M+     +  S+  V+ +       IK D  ++
Sbjct: 79  TKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTF 138

Query: 74  NTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
             ++ GF +   +   + L          + N       I  +  CG ++ A ++F +  
Sbjct: 139 PFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGD 198

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
              VV W  ++SGY +F + + +++LF EM  K                           
Sbjct: 199 GWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCEC------------------------ 234

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCG 247
                + PN+ +L  +L  CS L  L  GK ++    K  + +    L   LI M+  CG
Sbjct: 235 -----VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCG 289

Query: 248 DLEDACKLFLEIQRKDV-------------------------------VTWNAMISGYAQ 276
           +++ A  +F E++ +DV                               V+W AMI GY +
Sbjct: 290 EMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLR 349

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
             + ++ L LF  M+   +KPD  T V++L AC H G ++LG ++  + ++   I     
Sbjct: 350 MNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG-EWAKTYIDKNKIKNDTF 408

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
               ++D+  + G + +A  +  +M  K +
Sbjct: 409 IGNALIDMYFKCGNVEKAKKIFNEMQKKDK 438



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G V  A K+FDE+P  ++  WN MI GY   + +E G+ L ++M+   I+P+  +   +L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 206 LGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
            G +   +L+ GK  ++  V    L  +       I ++  CG +  A K+F      +V
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           VTWN ++SGY +  + E++ RLF +M  K E + P+S+T V +L AC+    +  G   +
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRV 379
           +  + +  +         ++D+    G++  A  +  +M  +      +I     + CR+
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
               DLA       F+  P      +  + + Y  M ++ +V  +   M+ +NV
Sbjct: 323 ----DLAR----KYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV 368



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 131/321 (40%), Gaps = 49/321 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNS-DDVVAA 58
           M  +  ++W S++ GFA    ++  A++ FD++P+ D VS+  M+   L +N   +V+  
Sbjct: 301 MKTRDVISWTSIVTGFANT-CRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTL 359

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKAR--DLFLAMPEKNSVS-----WSAMISGY 111
           F   Q   +K      TM+S      ++      +      +KN +       +A+I  Y
Sbjct: 360 FRDMQMSNVKPDEF--TMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMY 417

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            +CG ++KA ++F     K    WTA                               MI 
Sbjct: 418 FKCGNVEKAKKIFNEMQKKDKFTWTA-------------------------------MIV 446

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLC 230
           G   N   E+ L +   M+   + P+  +   V+  C+H+  +  GK     +  +  + 
Sbjct: 447 GLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIK 506

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDK 289
            + T    ++ +  + G L++A ++ + +  K + + W +++     H    K ++L + 
Sbjct: 507 PNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH----KNVQLAEM 562

Query: 290 MKDEGMKPDSITFVALLLACN 310
             +E ++ +       +L CN
Sbjct: 563 AANEILELEPENGAVYVLLCN 583


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/504 (43%), Positives = 311/504 (61%), Gaps = 8/504 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVA 127
           N ++S + + K +  AR +   MP ++ VSW++M++GY + G+ + A++L       K+ 
Sbjct: 176 NGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLK 235

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P    +              V   + +F ++  K+L++WN MIA YV N+   + + L  
Sbjct: 236 PDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYL 295

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G+ P+A S+SSVL  C  LS+  LG+++H+ V +  L  +      LI MY KCG
Sbjct: 296 QMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCG 355

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L++A  +F ++  +DVV+W +MIS Y   G+G+ A+ LF KM+D G  PD I FV++L 
Sbjct: 356 CLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLA 415

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGLVD G   F+ M  +YGI    +HY CMVDLLGRAGK+ EA  L ++MP +P  
Sbjct: 416 ACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNE 474

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G+LLSACRV+  +++A  AA +LF L P  + G YV L+NIYA   +W DV  +R  
Sbjct: 475 RVWGSLLSACRVYSSMNIALLAADHLFQLAPEQS-GYYVLLSNIYAKAGRWQDVETVRSI 533

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M    + K+PG S +E+   V+ F +GD+ H +   I++ L  L  RMK  GY+P+ + A
Sbjct: 534 MNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSA 593

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH V EE KE  L  HSEKLAI F ++    G+ IR+ KN+RVCGDCH ATK IS I +R
Sbjct: 594 LHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAER 653

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EII+RDT RFHHF+DG CSCGDYW
Sbjct: 654 EIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 96/171 (56%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y   G+      +FDE+  KN+V +N MI  YV N   +D L + + M   G  P+
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS   +L +G Q+H  V K  L  +      L+SMY KC  L+ A ++  
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           E+  +D+V+WN+M++GYAQ+G+   AL+L  +M+D  +KPD+ T  +LL A
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPA 247



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 168/369 (45%), Gaps = 62/369 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCILLNS-DDV 55
           M  +  V+WNS++AG+A Q G+  DA    +E+ D   +PD  +   +L  +   S D+V
Sbjct: 198 MPGRDMVSWNSMVAGYA-QNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNV 256

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           +   D F +L  K   SWN MI+ +V      +A DL+L M     E ++VS S+++   
Sbjct: 257 LYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPA- 315

Query: 112 IECGQLDKA---------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             CG L  A         VE  K+ P  +++   A+I  Y K G +  A  +FD+M  ++
Sbjct: 316 --CGDLSAAVLGRRIHEYVERKKLRP--NLLLENALIDMYAKCGCLKEARAVFDQMMFRD 371

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+W +MI+ Y  +   +D + L + M   G  P+  +  SVL  CSH   +  G+    
Sbjct: 372 VVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFN 431

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+ +         +TP I  Y                        N M+    + GK ++
Sbjct: 432 LMAE-------YGITPGIEHY------------------------NCMVDLLGRAGKIDE 460

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCM 341
           A  L  +M    M+P+   + +LL AC     +++ +   D +   + +A  +  +Y  +
Sbjct: 461 AYHLTRQMP---MEPNERVWGSLLSACRVYSSMNIALLAADHL---FQLAPEQSGYYVLL 514

Query: 342 VDLLGRAGK 350
            ++  +AG+
Sbjct: 515 SNIYAKAGR 523


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/624 (38%), Positives = 341/624 (54%), Gaps = 63/624 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+++AG++ Q G  + A E+   + +      N+  S I + S  V+ A  
Sbjct: 196 MPERDLVSWNTIVAGYS-QNGMARMALEMVKSMCEE-----NLKPSFITIVS--VLPAVS 247

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKA--------------RDLFLAMPEKNSVSWSA 106
             + + +        M SGF    N++ A              R LF  M E+N VSW++
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 307

Query: 107 MISGYIECGQLDKAVELFK------VAPV------------------------------- 129
           MI  Y++     +A+ +F+      V P                                
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG 367

Query: 130 --KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             ++V    ++IS Y K  +VD A  +F ++ ++ LV+WNAMI G+ +N    D L    
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    ++P+  +  SV+   + LS     K +H +V +S L K+    T L+ MY KCG
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +  A  +F  +  + V TWNAMI GY  HG G+ AL LF++M+   +KP+ +TF++++ 
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+H+GLV+ G++ F  M  +Y I    DHY  MVDLLGRAG+L EA D I +MP KP  
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G +L AC++HK ++ AE AA  LF LNP +  G +V LANIY A   W+ V ++R+S
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNP-DDGGYHVLLANIYRAASMWEKVGQVRVS 666

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M    + K PG S +E+   VH F SG   HP+   I+  L++L   +K AGYVPD    
Sbjct: 667 MLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLV 726

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           L  V  +VKEQLL  HSEKLAI+FGL+    GT I V KNLRVC DCH ATKYIS +  R
Sbjct: 727 L-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGR 785

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EI+VRD  RFHHFK+G CSCGDYW
Sbjct: 786 EIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 178/363 (49%), Gaps = 53/363 (14%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F R+P +D  SWNT+++G+ Q      A ++  +M E+N      +   +I    +  AV
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN------LKPSFITIVSVLPAV 246

Query: 122 ELFKVAPVKSVVAWTAMISG--------------YMKFGKVDLAEKLFDEMPTKNLVTWN 167
              ++  V   +   AM SG              Y K G ++ A +LFD M  +N+V+WN
Sbjct: 247 SALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWN 306

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +MI  YV+N   ++ + + + M+  G++P   S+   L  C+ L  L+ G+ +H+L  + 
Sbjct: 307 SMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVEL 366

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L ++ + +  LISMYCKC +++ A  +F ++Q + +V+WNAMI G+AQ+G+   AL  F
Sbjct: 367 GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYF 426

Query: 288 DKMKDEGMKPDSITFVALLLA------CNHA--------------------GLVDL---- 317
            +M+   +KPD+ T+V+++ A       +HA                     LVD+    
Sbjct: 427 SQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKC 486

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLL 374
           G      ++ D         +  M+D  G  G    A++L ++M     KP    F +++
Sbjct: 487 GAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVI 546

Query: 375 SAC 377
           SAC
Sbjct: 547 SAC 549



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 141/265 (53%), Gaps = 8/265 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
           F+ +  K    ++TM+ GF +  ++ KA   F+ M      P   + ++   + G     
Sbjct: 92  FEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAEL 151

Query: 116 QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           ++ K +   L K      + A T + + Y K  +V+ A K+FD MP ++LV+WN ++AGY
Sbjct: 152 RVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGY 211

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +N  A   L++++ M    ++P+  ++ SVL   S L  + +GK++H    +S      
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T L+ MY KCG LE A +LF  +  ++VV+WN+MI  Y Q+   ++A+ +F KM DE
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331

Query: 294 GMKPDSITFVALLLACNHAGLVDLG 318
           G+KP  ++ +  L AC   G ++ G
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERG 356



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 17/234 (7%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++S + ++G VD A ++F+ + +K  V ++ M+ G+ + S  +  L+    M    + 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   + + +L  C   + L++GK++H L+ KS    D  A+T L +MY KC  + +A K+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +D+V+WN +++GY+Q+G    AL +   M +E +KP  IT V++L A +   L+
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 316 DLGIQY--------FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            +G +         FDS+VN           T +VD+  + G L  A  L   M
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNI---------STALVDMYAKCGSLETARQLFDGM 297



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           SSL+  +Q+  LVFK+ L ++    T L+S++C+ G +++A ++F  I  K  V ++ M+
Sbjct: 48  SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            G+A+    +KAL+ F +M+ + ++P    F  LL  C     + +G +    +V   G 
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GF 166

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +      T + ++  +  ++ EA  +  +MP
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/617 (36%), Positives = 350/617 (56%), Gaps = 50/617 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-DKIPQ--PDVVSYNIMLSCILLNSDDVVA 57
           M VK +V WN+++ G+A Q G+ + + +LF D I    PD++S    +     + D  V 
Sbjct: 283 MAVKDSVTWNTMICGYA-QLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVG 341

Query: 58  AFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            F    +  I      DT + N +I  + +  ++  A+++F     K+SV+W+++I+GY 
Sbjct: 342 KF--VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399

Query: 113 ECGQLDKAVELFKVAPVK--------------------------------------SVVA 134
           + G   + +E FK+  ++                                       ++ 
Sbjct: 400 QSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELII 459

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             +++  Y K G++D   K+F  M   ++++WN +IA  V       G +++  M   G+
Sbjct: 460 GNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGL 519

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+ +++  +L  CS L+  + GK++H  +FKS    +      LI MY KCG LE+  K
Sbjct: 520 MPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIK 579

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  ++ KDVVTW A+IS +  +G+G+KAL+ F  M+  G+ PDS+ F+A + AC+H+G+
Sbjct: 580 VFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGM 639

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V  G+++FD M  DY +  + +HY C+VDLL R+G L +A + I  MP KP  +++G LL
Sbjct: 640 VKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALL 699

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SACR     ++A+  +  +  LN ++  G YV ++NIYA + KWD V  +R SMK   + 
Sbjct: 700 SACRARGNTNIAQRVSKKILELN-SDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLK 758

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SWIE+   V+ FR+GD+   +   + + L+ L + M   GYV DL+FALH V E+
Sbjct: 759 KEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEED 818

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            K  +L  HSE+LAIAFGL+    G+P+ V KNLRVCGDCH  TKYI+ I +REI+VRD 
Sbjct: 819 DKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDA 878

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFH FKDG CSCGD+W
Sbjct: 879 NRFHRFKDGACSCGDHW 895



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECGQLDKA 120
           F+ +  +D+ SWN++ISG+        A D++        V     M S  + CG L   
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAV 238

Query: 121 VE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            E       + K+     V+    ++S Y KF ++  A ++F +M  K+ VTWN MI GY
Sbjct: 239 KEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGY 298

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    E  +KL   MI  G  P+  S++S +  C     LQ+GK VH+ +  S    DT
Sbjct: 299 AQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDT 357

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            A   LI MY KCGDL  A ++F   + KD VTWN++I+GY Q G  ++ L  F  MK E
Sbjct: 358 VACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME 417

Query: 294 GMKPDSITFVALL 306
             KPDS+TFV LL
Sbjct: 418 -RKPDSVTFVLLL 429



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 25/321 (7%)

Query: 54  DVVAAFDFFQRL-PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
           D +++   F+ + P  +   WN++I          +A   +  M EK    ++ ++ ++I
Sbjct: 69  DPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVI 128

Query: 109 SG-------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +         + C   + A+E+        +    A+I  Y +F  +D A  +F+EM  +
Sbjct: 129 NSCARILDLELGCIVHEHAMEM---GFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR 185

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           + V+WN++I+GY  N + ED L +       G+ P+  ++SSVLL C  L +++ G  VH
Sbjct: 186 DSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVH 245

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            ++ K  +  D      L+SMY K   L +A ++F ++  KD VTWN MI GYAQ G+ E
Sbjct: 246 GVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHE 305

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA--KPDHYT 339
            +++LF  M D G  PD ++  + + AC  +G + +G       V+ Y I +  + D   
Sbjct: 306 ASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG-----KFVHKYLIGSGFECDTVA 359

Query: 340 C--MVDLLGRAGKLVEAVDLI 358
           C  ++D+  + G L+ A ++ 
Sbjct: 360 CNILIDMYAKCGDLLAAQEVF 380



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 193/409 (47%), Gaps = 48/409 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSC-ILLNSDD 54
           M+ + +V+WNS+++G+    G  +DA +++ K       PD  +  +++L+C  L+   +
Sbjct: 182 MSNRDSVSWNSLISGYCSN-GFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKE 240

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            VA     +++ I  D    N ++S + + + + +AR +F  M  K+SV+W+ MI GY +
Sbjct: 241 GVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQ 300

Query: 114 CGQLDKAVELFK-------------VAPVKS-------------------------VVAW 135
            G+ + +V+LF               + +++                          VA 
Sbjct: 301 LGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC 360

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +I  Y K G +  A+++FD    K+ VTWN++I GY ++ + ++GL+  +MM  +  +
Sbjct: 361 NILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMM-KMERK 419

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ +   +L   S L+ +  G+ +H  V K     +      L+ +Y KCG+++D  K+
Sbjct: 420 PDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKV 479

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +   D+++WN +I+            ++ ++M+ EG+ PD  T + +L  C+   + 
Sbjct: 480 FSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVR 539

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             G +     +   G  +       ++++  + G L   + + K M  K
Sbjct: 540 RQGKE-IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK 587



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQ 276
           + VH L+  S L         LIS Y +  D   +  +F  I    +V  WN++I     
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +G   +AL  + +M+++ ++PD+ TF +++ +C     ++LG
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELG 140


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 333/561 (59%), Gaps = 9/561 (1%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF----QRLPIKDTASWN 74
           + G +  A +LF  +P PD   YN +       S     +  F+    Q     +  ++ 
Sbjct: 48  KHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFP 107

Query: 75  TMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           ++I     ++   +     L      ++ + + +I  Y   G LD A  +F      +VV
Sbjct: 108 SLIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVV 167

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMM-IG 191
           +WT+++SGY ++G VD A ++F+ MP K N V+WNAMIA +V+ +   +   L R M + 
Sbjct: 168 SWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVE 227

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +  +    +++L  C+ + +L+ G  +H+ V K+ +  D+   T +I MYCKCG L+ 
Sbjct: 228 KKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDK 287

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLACN 310
           A  +F  ++ K V +WN MI G+A HGKGE A+RLF +M++E M  PDSITFV +L AC 
Sbjct: 288 AFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACA 347

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GLV+ G  YF  MV+ +GI    +HY CMVDLL RAG+L EA  +I +MP  P  A+ 
Sbjct: 348 HSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVL 407

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G LL ACR+H  L+L E     +  L+P N+ G YV L N+YA+  KW+ VA +R  M +
Sbjct: 408 GALLGACRIHGNLELGEEVGNRVIELDPENS-GRYVILGNMYASCGKWEQVAGVRKLMDD 466

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             V K PG+S IE+  VV+EF +G R HP   +I+ K+ E+ + +++ G+VPD +  LH 
Sbjct: 467 RGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHD 526

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           + EE +E  L +HSEKLAIA+GL+K   G  +RV KNLRVC DCH+A+K IS +   +II
Sbjct: 527 LVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDII 586

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           +RD +RFHHF +G CSC DYW
Sbjct: 587 IRDRSRFHHFSNGECSCKDYW 607



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 130/304 (42%), Gaps = 36/304 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K +V+WN+++A F K   + ++A  LF ++     +  +  ++  +L++   V A     
Sbjct: 196 KNSVSWNAMIACFVKG-NRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGAL---- 250

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
                +   W   I  +V+K  +     L            + +I  Y +CG LDKA  +
Sbjct: 251 -----EQGMW---IHKYVEKTGIVLDSKLA-----------TTIIDMYCKCGCLDKAFHV 291

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-----TWNAMIAGYVENSW 178
           F    VK V +W  MI G+   GK + A +LF EM  + +V     T+  ++     +  
Sbjct: 292 FCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGL 351

Query: 179 AEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
            E+G    R M+ + GI P       ++   +    L+  K+V   + + P+  D   L 
Sbjct: 352 VEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKV---IDEMPMSPDAAVLG 408

Query: 238 PLISMYCKCGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
            L+      G+L   E+     +E+  ++   +  + + YA  GK E+   +   M D G
Sbjct: 409 ALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRG 468

Query: 295 MKPD 298
           +K +
Sbjct: 469 VKKE 472


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/615 (36%), Positives = 356/615 (57%), Gaps = 46/615 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP---QPDVVSYNIMLSCILLNSDDVVA 57
           M ++  V+WN+++ G++ Q G  +++ +LF ++    +PD+++   +L       D    
Sbjct: 277 MVLRDAVSWNTMICGYS-QVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFG 335

Query: 58  AF--DFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  D+      + DT + N +I+ + +  N+  ++++F  M  K+SVSW++MI+ YI+ 
Sbjct: 336 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 395

Query: 115 GQLDKAVELFKVAPV--------------------------------------KSVVAWT 136
           G  D+A++LFK+                                          ++V   
Sbjct: 396 GSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSN 455

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            ++  Y K G++  + K+F+ M  ++++TWN +IA  V +     GL+++  M   G+ P
Sbjct: 456 TLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP 515

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + +++ S+L  CS L++ + GK++H  +FK  L  D      LI MY KCG L ++ ++F
Sbjct: 516 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 575

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ KDVVTW A+IS    +G+G+KA+R F +M+  G+ PD + FVA++ AC+H+GLV+
Sbjct: 576 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVE 635

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G+ YF  M  DY I  + +HY C+VDLL R+  L +A D I  MP KP  +I+G LLSA
Sbjct: 636 EGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSA 695

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR+    ++AE  +  +  LNP +  G YV ++NIYAA+ KWD V  IR S+K   + K 
Sbjct: 696 CRMSGDTEIAERVSERIIELNP-DDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 754

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG SW+E+   V+ F +G +   +   +++ L  L   M   GY+ +L+F LH + E+ K
Sbjct: 755 PGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEK 814

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
             +L  HSE+LAIAFGL+    GTP++V KNLRVC DCH  TKYIS I +RE++VRD  R
Sbjct: 815 RDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANR 874

Query: 557 FHHFKDGTCSCGDYW 571
           FH FKDG CSCGDYW
Sbjct: 875 FHVFKDGACSCGDYW 889



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 178/336 (52%), Gaps = 13/336 (3%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           +D+  A   F+ +P++D  SWN++ISG+       +A +++        V  S  +S  +
Sbjct: 164 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVL 223

Query: 113 E-CGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
             CG L    E       + K+   K V+    ++S Y KF  +    ++FD+M  ++ V
Sbjct: 224 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 283

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WN MI GY +    E+ +KL   M+    +P+  +++S+L  C HL  L+ GK VH  +
Sbjct: 284 SWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYM 342

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             S    DTTA   LI+MY KCG+L  + ++F  ++ KD V+WN+MI+ Y Q+G  ++A+
Sbjct: 343 ITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAM 402

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           +LF  MK + +KPDS+T+V LL      G + LG +    +    G  +       +VD+
Sbjct: 403 KLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK-MGFNSNIVVSNTLVDM 460

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             + G++ +++ + + M  +     + T++++C VH
Sbjct: 461 YAKCGEMGDSLKVFENMKAR-DIITWNTIIASC-VH 494



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 2/229 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A+I  Y +F  +D A K+F+EMP +++V+WN++I+GY  N +  + L++      LG+ 
Sbjct: 154 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 213

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ ++SSVL  C  L S++ G  +H L+ K  + KD      L+SMYCK   L D  ++
Sbjct: 214 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 273

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++  +D V+WN MI GY+Q G  E++++LF +M ++  KPD +T  ++L AC H G +
Sbjct: 274 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDL 332

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           + G    D M+   G          ++++  + G L+ + ++   M  K
Sbjct: 333 EFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 380



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 198/427 (46%), Gaps = 53/427 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNS 52
           M ++  V+WNS+++G+    G   +A E++ +     VV  +  +S +L        +  
Sbjct: 176 MPLRDVVSWNSLISGY-NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEE 234

Query: 53  DDVVAAFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            D++      +++ I KD    N ++S + +   +   R +F  M  +++VSW+ MI GY
Sbjct: 235 GDIIHG--LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGY 292

Query: 112 IECGQLDKAVELF---------KVAPVKSVV----------------------------- 133
            + G  +++++LF          +  + S++                             
Sbjct: 293 SQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 352

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A   +I+ Y K G +  ++++F  M  K+ V+WN+MI  Y++N   ++ +KL +MM    
Sbjct: 353 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-KTD 411

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           ++P++ +   +L   + L  L LGK++H  + K     +      L+ MY KCG++ D+ 
Sbjct: 412 VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 471

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K+F  ++ +D++TWN +I+           LR+  +M+ EG+ PD  T +++L  C+   
Sbjct: 472 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 531

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
               G +     +   G+ +       ++++  + G L  +  + K M  K     +  L
Sbjct: 532 AKRQG-KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 589

Query: 374 LSACRVH 380
           +SAC ++
Sbjct: 590 ISACGMY 596



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           SV+    +I+ Y  F     +  +F    P+ N+  WN++I     N    + L L    
Sbjct: 47  SVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSET 106

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             + ++P+  +  SV+  C+ L   ++ K +H  V       D      LI MYC+  DL
Sbjct: 107 QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDL 166

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           + A K+F E+  +DVV+WN++ISGY  +G   +AL ++ + ++ G+ PDS T  ++L AC
Sbjct: 167 DKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRAC 226

Query: 310 NHAGLVDLG 318
              G V+ G
Sbjct: 227 GGLGSVEEG 235


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/585 (39%), Positives = 339/585 (57%), Gaps = 19/585 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLSCILLNS---DDV 55
           +T V W++++A  A  RG  + A  L +++      +P+V+++N ++S +  +    D V
Sbjct: 83  RTVVGWSALVAAHAA-RGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAV 141

Query: 56  VA-AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISG 110
           VA A    + L   D    +  +S       ++  + L      A    ++   +A+I  
Sbjct: 142 VALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDM 201

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTW 166
           Y +CGQ  + V +F  +    V +  A+I+G  +  +V  A +LF E   +    N+V+W
Sbjct: 202 YGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSW 261

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            +++A  V+N    + ++  R M   G  PN+ ++  VL   +++++L  G+  H    +
Sbjct: 262 TSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALR 321

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    + L+ MY KCG ++DA  +F  +  ++VV+WNAMI GYA +G+   A+ +
Sbjct: 322 KGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWM 381

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M     KPD +TF  LL AC  AGL + G  YF  M N+YG++ + +HY CMV LLG
Sbjct: 382 FHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLG 441

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAGKL EA DLI  MPF+P   I+G+LL +CRVH  +DLAE AA  LF+L P N AG YV
Sbjct: 442 RAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPEN-AGNYV 500

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+NIYA+ K WD V R+R  MK+  + K  G SWIE+   VH   +GD  HP + +I E
Sbjct: 501 LLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIE 560

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
           K+ +L  +M+  G+VP  +F LH V E+ K+ +L  HSEKLA+A GLI    GT +RV K
Sbjct: 561 KINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIK 620

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR+CGDCH A K+IS+ E REI VRDT RFHHF  G CSCGD+W
Sbjct: 621 NLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 126/245 (51%), Gaps = 17/245 (6%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--VAPVKSVVAWTAMISGYMKFG 146
           ARD F+A         S+++  Y+  G    A  LF     P ++VV W+A+++ +   G
Sbjct: 49  ARDPFVA---------SSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARG 99

Query: 147 KVDLAEKLFDEMP-----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASS 200
             + A +L +EM        N++TWN +++G   +  A D +  L  M G G+ RP+A+ 
Sbjct: 100 DAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATG 159

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S  L     +  + +G+Q+H    K+    D   +T LI MY KCG   +  ++F E  
Sbjct: 160 VSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESS 219

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             DV + NA+I+G +++ +  +ALRLF +  D G++ + +++ +++  C   G     ++
Sbjct: 220 HMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVE 279

Query: 321 YFDSM 325
           +F  M
Sbjct: 280 FFREM 284


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/480 (43%), Positives = 308/480 (64%), Gaps = 7/480 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELF-KVAPVK---SVVAWTAMISGYMKFGKVDLAEK 153
           E+N V++  ++SG+   G L++   +  +VA       V+  TA+++ Y K   V+ A  
Sbjct: 7   ERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARA 66

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHL 211
            F+++   N+V+W+AM+A Y +N  A   L+L R M     G+ PN  +  ++L  CS L
Sbjct: 67  AFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFL 126

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
            +L  G+++H  V +     D      L++ Y +CG L DA  +F  ++R+DV++W++MI
Sbjct: 127 GALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMI 186

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           S +AQ G+ ++A+ L+ +M  EG  PD I F+++L AC+++G+V+    +F S+V D  +
Sbjct: 187 SAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQV 246

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
               +HY CMVD+LGRAGKL +A DL++ MPF P P ++ T+LSAC+++  ++  E AA 
Sbjct: 247 EPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAE 306

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            +F L+P N++  Y+ LANIY+A K+  D ARIR  M+E  + K PG SWIEV   VHEF
Sbjct: 307 VVFELDPENSSP-YITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEF 365

Query: 452 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 511
            +GD++HP+   I+ +++ L ++MK AGY  D +  L  V E+ KE LL +HSEKLAIAF
Sbjct: 366 IAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAF 425

Query: 512 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GLI  P G P+R+ KNLRVC DCH ATK IS +  REI+VRDT RFHHF DG CSC DYW
Sbjct: 426 GLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 35/220 (15%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+  N  +  +VL G +   SL+ G++VH  V  + L  D    T L++MY KC  +E+A
Sbjct: 5   GVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEA 64

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVALLLACN 310
              F +I R +VV+W+AM++ YAQ+G    AL L+ +M    +GM P+ +TF+ LL AC+
Sbjct: 65  RAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124

Query: 311 -----------HAGLVDLGIQ----YFDSMVNDYGIAA-------------KPD--HYTC 340
                      HA + + G        +++VN YG                + D   ++ 
Sbjct: 125 FLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSS 184

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 377
           M+    + G++ EA++L  +M  +   P   IF ++L AC
Sbjct: 185 MISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFAC 224



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 77/146 (52%), Gaps = 11/146 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP------IKDTASWNTM 76
           +++A+  F+KI +P+VVS++ ML+    N    + A + ++ +         +  ++ T+
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARM-ALELYREMGSARKGMAPNRVTFITL 119

Query: 77  ISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +        +A+ R +  A+ E+    + V  +A+++ Y  CG L  A  +F     + V
Sbjct: 120 LDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDV 179

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEM 158
           ++W++MIS + + G+VD A +L+  M
Sbjct: 180 ISWSSMISAFAQRGRVDEAMELYHRM 205



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 147/332 (44%), Gaps = 45/332 (13%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIML-SCILLNS----D 53
             V+W+++LA +A Q G  + A EL+ ++        P+ V++  +L +C  L +     
Sbjct: 75  NVVSWSAMLAAYA-QNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGR 133

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            + AA    +R    D    N +++ + +  ++  A+ +F  M  ++ +SWS+MIS + +
Sbjct: 134 KIHAAVA--ERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQ 191

Query: 114 CGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLF-----DEMPTKNLV 164
            G++D+A+EL+        +   + + +++      G V+ +   F     D      L 
Sbjct: 192 RGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLE 251

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            +  M+          D   LLR+M      P      ++L  C   + ++ G+   ++V
Sbjct: 252 HYACMVDVLGRAGKLRDAEDLLRLM---PFHPGPLLYMTMLSACKLYTDVERGEAAAEVV 308

Query: 225 FK-SPLCKDTTALTPLISMYCKCGDLEDACKL--FLE---IQRKDVVTW-------NAMI 271
           F+  P  ++++    L ++Y      +DA ++   +E   I++K   +W       +  I
Sbjct: 309 FELDP--ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFI 366

Query: 272 SGYAQHGKGEKAL----RLFDKMKDEGMKPDS 299
           +G   H + ++      RL  +MK+ G   D+
Sbjct: 367 AGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDT 398


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/545 (40%), Positives = 310/545 (56%), Gaps = 48/545 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           A   F  +   D  S NT+IS   +  +++  AR+LF  MP+++  +WSA++SGY   GQ
Sbjct: 82  ALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYARHGQ 141

Query: 117 LDKAVELFKV---------------------------------------------APVKS 131
            + A+ L++                                              A    
Sbjct: 142 PEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGD 201

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMI 190
            V W+A+   Y K G+VD A ++FD MP ++ V+W AM+  Y +     +G +L L M+ 
Sbjct: 202 AVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLR 261

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G+RPN  + + VL  C+  +    G+QVH  + KS       A + L+ MY KCGD+ 
Sbjct: 262 TRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMG 321

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A ++F  + + D+V+W A+ISGYAQ+G+ E+ALR FD     G+KPD +TFV +L AC 
Sbjct: 322 SAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACA 381

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           HAGLVD G++ F S+   Y I    DHY C++DLL R+G+   A  +I  M  KP   ++
Sbjct: 382 HAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLW 441

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
            +LL  CR+HK + LA  AA  LF + P N A  YV LANIYA++  +D+V  +R  M+ 
Sbjct: 442 ASLLGGCRIHKNVGLARRAAEALFEIEPENPA-TYVTLANIYASVGLFDEVEDVRRIMES 500

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + KMP  SWIEVG  VH F  GD+ HP+   I+  LK+L  +M   GYV D+EF LH 
Sbjct: 501 KGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHD 560

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V +E KEQ + +HSE+LA+AFG+I  P G+PI+VFKNLR+CGDCH A K IS I +R+II
Sbjct: 561 VEDEQKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDII 620

Query: 551 VRDTT 555
           VRD+ 
Sbjct: 621 VRDSN 625



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 144/529 (27%), Positives = 230/529 (43%), Gaps = 69/529 (13%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F R+P++D  SW  M+  +       +   LFL M     V  +      +     + AV
Sbjct: 225 FDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAV 284

Query: 122 ELF---------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           E F         K     S  A +A++  Y K G +  A ++F+ M   +LV+W A+I+G
Sbjct: 285 ESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISG 344

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N   E+ L+   M +  GI+P+  +   VL  C+H   +  G ++   + K   C +
Sbjct: 345 YAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSI-KEQYCIE 403

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
            TA       Y        AC                +I   ++ G+ E+A ++   M  
Sbjct: 404 HTA-----DHY--------AC----------------VIDLLSRSGQFERAEKMIGNM-- 432

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             +KP+   + +LL  C     V L  +  +++         P  Y  + ++    G   
Sbjct: 433 -AVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIE--PENPATYVTLANIYASVGLFD 489

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           E  D+ + M  K    +  +  S   V +R+ +       + + +   A   Y  L  +Y
Sbjct: 490 EVEDVRRIMESKGITKMPAS--SWIEVGRRVHV-----FLVGDKSHPKADEIYALLKKLY 542

Query: 413 AAMKKWDDVARIRLSM-------KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV--- 462
             M +   VA I   +       KE ++        +  G +     S  +V   L    
Sbjct: 543 VKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLRICG 602

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
             H  +K + + ++    V D           +KEQ + +HSE+LA+AFG+I  P G+PI
Sbjct: 603 DCHAAIKLISQIVQRDIIVRD--------SNSLKEQDIGYHSERLAVAFGIIASPEGSPI 654

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +VFKNLR+CGDCH A K IS I +R+IIVRD+ RFHHFKDG CSC DYW
Sbjct: 655 KVFKNLRICGDCHTAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 703


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 315/527 (59%), Gaps = 13/527 (2%)

Query: 57  AAFD---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYI 112
           A FD    F+ +P KD  SW  MI G+ +     +A   F  M  E+ ++    + S   
Sbjct: 91  AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 150

Query: 113 ECGQLDKA-------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLV 164
            CG L            + K+     +    A+   Y K G ++ A  +F  +   +N+V
Sbjct: 151 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 210

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           ++  +I GYVE    E GL +   +   GI PN  + SS++  C++ ++L+ G Q+H  V
Sbjct: 211 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 270

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K    +D    + L+ MY KCG LE A + F EI     + WN+++S + QHG G+ A+
Sbjct: 271 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 330

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           ++F++M D G+KP++ITF++LL  C+HAGLV+ G+ YF SM   YG+    +HY+C++DL
Sbjct: 331 KIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 390

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG+L EA + I +MPF+P    + + L ACR+H   ++ + AA  L  L P N +G 
Sbjct: 391 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN-SGA 449

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
            V L+NIYA  ++W+DV  +R+ M++ NV K+PGYSW++VG   H F + D  HP   +I
Sbjct: 450 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAI 509

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +EKL  L  ++K AGYVP  +     + + +KE+LL  HSE++A+AF LI +P+G PI V
Sbjct: 510 YEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIV 569

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH A K+IS +  R+IIVRD +RFHHF DG+CSCGDYW
Sbjct: 570 KKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 152/325 (46%), Gaps = 11/325 (3%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIECGQLDKA 120
           +P ++  SW  MISG  Q    ++A   F  M     V    ++S+ I      G ++  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 121 VEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
            ++     K      +   + +   Y K G +  A K+F+EMP K+ V+W AMI GY + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              E+ L   + MI   +  +   L S L  C  L + + G+ VH  V K     D    
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 237 TPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
             L  MY K GD+E A  +F ++ + ++VV++  +I GY +  + EK L +F +++ +G+
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           +P+  TF +L+ AC +   ++ G Q   + V        P   + +VD+ G+ G L +A+
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVH 380
               ++   P    + +L+S    H
Sbjct: 300 QAFDEIG-DPTEIAWNSLVSVFGQH 323


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 326/573 (56%), Gaps = 35/573 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----------PIKDT 70
           G L  +  LF + P P     N+ L   ++N+    A FD F             PI+  
Sbjct: 69  GHLHHSVTLFHRTPNP-----NVFLWTHIINAH---AHFDLFHHALSYYSQMLTHPIQPN 120

Query: 71  ASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           A     +S  ++   +  AR +        +     VS + ++  Y   G +  A +LF 
Sbjct: 121 A---FTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVS-TGLVDAYARGGDVASAQKLFD 176

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
             P +S+V++TAM++ Y K G +  A  LF+ M  K++V WN MI GY ++    + L  
Sbjct: 177 AMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVF 236

Query: 186 LR-------MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            R             +RPN  ++ +VL  C  + +L+ GK VH  V  + +  +    T 
Sbjct: 237 FRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTA 296

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MYCKCG LEDA K+F  ++ KDVV WN+MI GY  HG  ++AL+LF +M   G+KP 
Sbjct: 297 LVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPS 356

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            ITFVA+L AC HAGLV  G + FDSM + YG+  K +HY CMV+LLGRAG++ EA DL+
Sbjct: 357 DITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLV 416

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           + M  +P P ++GTLL ACR+H  + L E  A  L + N   ++G YV L+N+YAA + W
Sbjct: 417 RSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVS-NGLASSGTYVLLSNMYAAARNW 475

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
             VA++R  MK + V K PG S IEV   VHEF +GDR HP    I+  L+++   +K  
Sbjct: 476 VGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKER 535

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
            Y P  +  LH +GE+ KEQ L  HSEKLA+AFGLI    G  I++ KNLRVC DCH   
Sbjct: 536 HYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVM 595

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K +S I  R+II+RD  RFHHF++G+CSC DYW
Sbjct: 596 KIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 129/320 (40%), Gaps = 48/320 (15%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y   G +  +  LF   P  N+  W  +I  +         L     M+   I+PNA +L
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SS+L  C+    L   + VH    K  L       T L+  Y + GD+  A KLF  +  
Sbjct: 125 SSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFD--KMKD--------------------------- 292
           + +V++ AM++ YA+HG   +A  LF+   MKD                           
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240

Query: 293 ---------EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
                      ++P+ IT VA+L +C   G ++ G ++  S V + GI       T +VD
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVD 299

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNPANA 401
           +  + G L +A  +   M  K   A + +++    +H   D  L  F  M    + P++ 
Sbjct: 300 MYCKCGSLEDARKVFDVMEGKDVVA-WNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDI 358

Query: 402 AGCYVQLANIYAAM--KKWD 419
               V  A  +A +  K W+
Sbjct: 359 TFVAVLTACAHAGLVSKGWE 378



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 83/333 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +K  V WN ++ G+A Q G   +A   F K+      + N     +  N   VVA   
Sbjct: 209 MGMKDVVCWNVMIDGYA-QHGCPNEALVFFRKMMMMMGGNGNGK---VRPNEITVVAVLS 264

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              ++   +   W   +  +V+   +           + N    +A++  Y +CG L+ A
Sbjct: 265 SCGQVGALECGKW---VHSYVENNGI-----------KVNVRVGTALVDMYCKCGSLEDA 310

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ++F V   K VVAW +MI GY   G  D A +LF EM                      
Sbjct: 311 RKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCC-------------------- 350

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
                      +G++P+  +  +VL  C+H   +  G +    VF S   KD   + P +
Sbjct: 351 -----------IGVKPSDITFVAVLTACAHAGLVSKGWE----VFDS--MKDGYGMEPKV 393

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
             Y                          M++   + G+ ++A  L   M+ E   PD +
Sbjct: 394 EHY------------------------GCMVNLLGRAGRMQEAYDLVRSMEVE---PDPV 426

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
            +  LL AC     V LG +  + +V++ G+A+
Sbjct: 427 LWGTLLWACRIHSNVSLGEEIAEILVSN-GLAS 458


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/546 (40%), Positives = 316/546 (57%), Gaps = 43/546 (7%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--- 124
           + T + N ++S + +   + +AR +F  + E+  VSWSAMI  Y   G+  +A+ LF   
Sbjct: 18  RATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRM 77

Query: 125 ----KVAP-----------------------------------VKSVVAWTAMISGYMKF 145
               +V P                                     + +   A+++ Y++ 
Sbjct: 78  RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRC 137

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A K+FD M   +  +W +MI    EN    + L+L   M   GI P + +L+SVL
Sbjct: 138 GSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVL 197

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+   +L++GKQ+H  +  S       A T L+ MY KCG LE + K+F  ++ ++ V
Sbjct: 198 NACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSV 257

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +W AMI+  AQHG+G++AL LF +M  EGM  D+ TF+ +L AC+HAGL+   +++F SM
Sbjct: 258 SWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSM 317

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
           V DY IA    HY   +D +GRAG+L +A +LI  MPF P+   + TLL+ACR+H + + 
Sbjct: 318 VEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAER 377

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
           A   A  L  L P ++   Y  L N+YAA  ++ D  R+R  M +  + K+PG S+IEV 
Sbjct: 378 ATKVAELLSKLAPEDSMA-YTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVK 436

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
             VHEF +GDR HP    I  +L++L  RM+ AGYVP+ +  LHAV EE KEQL+  HSE
Sbjct: 437 NKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSE 496

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           KLAIAFGLI  P GTP+ + KNLRVC DCH ATK I+ I +R I+VRDT RFHHF+DG C
Sbjct: 497 KLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQC 556

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 557 SCKDYW 562



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 155/359 (43%), Gaps = 97/359 (27%)

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           ++ G+++H  +      + T A   L+SMY KCG L++A  +F  I  + VV+W+AMI  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 274 YAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACN-----------HA--------- 312
           YA HG+G++AL LF +M+++G ++P+++TF  +  AC            HA         
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 313 -----------------GLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVE 353
                            G ++   + FD+M  D+     PD +  T M+       +L+E
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTM--DH-----PDAFSWTSMITACTENCELLE 173

Query: 354 AVDLIKKMPFK---PQPAIFGTLLSAC----------RVHKRLDLAEFAAMNLFNLNPAN 400
           A++L  +M  +   P      ++L+AC          ++H RLD + F +  L       
Sbjct: 174 ALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQ----- 228

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
                  L ++YA     +  +++  +M+  N V     SW  +   + +   GD     
Sbjct: 229 -----TALLDMYAKCGSLECSSKVFTAMETRNSV-----SWTAMIAALAQHGQGD----- 273

Query: 461 LVSIHEKLKELEKRMKLAGYVPD-------LEFALHAVGEEVKEQLLLFHS--EKLAIA 510
                E L EL K M L G V D       L    HA    +KE L  FHS  E  AIA
Sbjct: 274 -----EAL-ELFKEMNLEGMVADATTFICVLRACSHA--GLIKESLEFFHSMVEDYAIA 324



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 132/305 (43%), Gaps = 63/305 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI--- 77
           G L++A+++FD +  PD  S+  M++    N  +++ A + F R+ ++     +  +   
Sbjct: 138 GSLEEARKVFDTMDHPDAFSWTSMITACTENC-ELLEALELFHRMNLEGIPPTSVTLASV 196

Query: 78  ------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                 SG ++      +R L  +    + ++ +A++  Y +CG L+ + ++F     ++
Sbjct: 197 LNACACSGALKVGKQIHSR-LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRN 255

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            V+WTAMI+   + G+ D A +LF EM  + +V                           
Sbjct: 256 SVSWTAMIAALAQHGQGDEALELFKEMNLEGMVA-------------------------- 289

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC------- 244
                +A++   VL  CSH   ++       L F   + +D  A+ P  + YC       
Sbjct: 290 -----DATTFICVLRACSHAGLIK-----ESLEFFHSMVED-YAIAPTETHYCRALDTIG 338

Query: 245 KCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALR---LFDKMKDEGMKPDSI 300
           + G L+DA +L   +    + +TW  +++    H + E+A +   L  K+  E    DS+
Sbjct: 339 RAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPE----DSM 394

Query: 301 TFVAL 305
            +  L
Sbjct: 395 AYTLL 399


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 336/578 (58%), Gaps = 12/578 (2%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK  V W +V++G AK  G L DA  L    P  +V+S+  ++S     +     A D F
Sbjct: 168 VKDAVAWTTVISGLAKL-GLLDDAWCLLRHSPARNVISWTGLISG-YSRAGRAAEAVDCF 225

Query: 63  QRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGYIEC 114
             +       D  +   ++S   Q K++   R L   + EK  +       A+I  Y +C
Sbjct: 226 NSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKC 285

Query: 115 GQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           G + +A E+F  +   +   +W AMI GY K G VD+A  LFD+M  ++LVT+N++I GY
Sbjct: 286 GDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGY 345

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           +      + L L   M    +R +  ++ S+L  C+ L +L  G+ +H  + +  +  D 
Sbjct: 346 IHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDI 405

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T L+ MY KCG +E+A  +F  +  +DV TW+AMI+G A +G G+ AL  F  MK +
Sbjct: 406 YLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVD 465

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G +P+S+T++A+L AC+H+ L+D G  YF+ M   + I    +HY CM+DLLGR+G L E
Sbjct: 466 GFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDE 525

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+DL++ MP +P   I+ ++LSACRVHK  +LA  AA +L  L P   A  YVQL NIY 
Sbjct: 526 AMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDA-VYVQLYNIYI 584

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
             ++W+D ++IR  M+E  V K  GYS I V   VH+F   DR HP+++ I   ++E+ +
Sbjct: 585 DSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITR 644

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           R+K  GY P        V EE KE  LL HSEK+AIAFGLI +    P+ + KNLRVC D
Sbjct: 645 RLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCED 704

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A K IS I  REIIVRD +RFHHF+DGTCSC D+W
Sbjct: 705 CHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 114/269 (42%), Gaps = 36/269 (13%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LS 212
           LFD MP    +   A+ A +  +S  E  L L R M   G+  +A +   +   C+   +
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRA 118

Query: 213 SLQLGKQVHQLVFKSPL--------------------------------CKDTTALTPLI 240
            + L + +H   F++ L                                 KD  A T +I
Sbjct: 119 HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVI 178

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           S   K G L+DA  L      ++V++W  +ISGY++ G+  +A+  F+ M  +G++PD +
Sbjct: 179 SGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEV 238

Query: 301 TFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           T + LL AC  A L DL   +    +V + G+         ++D+  + G +  A ++  
Sbjct: 239 TVIGLLSAC--AQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFD 296

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
            +    +P  +  ++        +D+A +
Sbjct: 297 ALGRGRRPQSWNAMIDGYCKLGHVDVARY 325


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/537 (40%), Positives = 320/537 (59%), Gaps = 40/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           NT+I  +     +  AR +F  M E+N  +W++M +GY + G  ++ V+LF         
Sbjct: 163 NTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIR 222

Query: 125 --KVAPVKSVVA-----------W-----------------TAMISGYMKFGKVDLAEKL 154
             +V  V  + A           W                 T+++  Y K G+VD A +L
Sbjct: 223 FDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRL 282

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD+M  +++V W+AMI+GY + S   + L L   M    I PN  ++ S+L  C+ L +L
Sbjct: 283 FDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGAL 342

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GK VH  + K  +    T  T L+  Y KCG +E + ++F ++  K+V++W  +I G 
Sbjct: 343 ETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGL 402

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A +G+G+KAL  F  M ++ ++P+ +TF+ +L AC+HAGLVD G   F SM  D+GI  +
Sbjct: 403 ASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPR 462

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY CMVD+LGRAG + EA   IK MP +P   I+ TLL++C+VHK +++ E +   L 
Sbjct: 463 IEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLI 522

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L P + +G Y+ L+NIYA++ +W+D  ++R  MKE  + K PG S IE+  V+HEF + 
Sbjct: 523 ILEPTH-SGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAE 581

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D VH +   I+  ++++ K++K AGYVP+   A     E+ KE  +  HSEKLAIAFGLI
Sbjct: 582 DNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLI 641

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K P GT IR+ KNLRVC DCH ATK +S +  REI+VRD TRFHHFK+G+CSC DYW
Sbjct: 642 KSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 189/370 (51%), Gaps = 23/370 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KT  + N + A   K R  LK         P+   V+ N++ S  +L    +  A   F+
Sbjct: 35  KTIRDLNEIHAHLIKTRLLLK---------PK---VAENLLESAAILLPTSMDYAVSIFR 82

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--ECGQLDKAV 121
           ++   D+ ++N MI GF  K++  +A  LF  M E NSV         I   C +L    
Sbjct: 83  QIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHE-NSVQPDEFTFPCILKVCSRLQALS 141

Query: 122 E-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           E       + K            +I  Y   G+V++A ++FDEM  +N+ TWN+M AGY 
Sbjct: 142 EGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYT 201

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           ++   E+ +KL   M+ L IR +  +L SVL  C  L+ L+LG+ +++ V +  L  + T
Sbjct: 202 KSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPT 261

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
            +T L+ MY KCG ++ A +LF ++ R+DVV W+AMISGY+Q  +  +AL LF +M+   
Sbjct: 262 LITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN 321

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           + P+ IT V++L +C   G ++ G ++    +    +       T ++D   + G +  +
Sbjct: 322 IDPNEITMVSILSSCAVLGALETG-KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESS 380

Query: 355 VDLIKKMPFK 364
           +++  KMP K
Sbjct: 381 IEVFGKMPVK 390



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 75/166 (45%), Gaps = 11/166 (6%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K TV   + L  F  + G ++ + E+F K+P  +V+S+ +++  +  N      A ++F
Sbjct: 357 MKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQG-KKALEYF 415

Query: 63  QRLPIKDTASWNTMISGFVQKKNMA----KARDLFLAMPEKNSVS-----WSAMISGYIE 113
             +  K+    +    G +   + A    + RDLF++M     +      +  M+     
Sbjct: 416 YLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGR 475

Query: 114 CGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEM 158
            G +++A +  K  P++ + V W  +++       V++ E+   ++
Sbjct: 476 AGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQL 521


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/467 (45%), Positives = 285/467 (61%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + ++  Y   G +  A +LF   P +S+V+ T M++ Y K G++D A  LF+ M  +++V
Sbjct: 180 TGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVV 239

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WN MI GY ++    + LKL R M+     PN  ++ +VL  C  L +L+ G+ +H  +
Sbjct: 240 CWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYI 299

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
               +  +    T LI MY KCG LEDA  +F  I+ KDVV WN+MI GYA HG  + AL
Sbjct: 300 ENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHAL 359

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           +LF++M + G KP  ITF+ +L AC H GLV+ G  +F  M + YGI  K +HY CMV+L
Sbjct: 360 QLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNL 419

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG L EA  L+K M     P ++GTLL  CR+H  + L E  A  L +   AN +G 
Sbjct: 420 LGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLAN-SGT 478

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+N+YAA   W+ VA++R  MKE+ + K  G S IEV   VHEF +G+R HP+   I
Sbjct: 479 YVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEI 538

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +  L E+   +K  GY P  +  LH + EE KEQ L  HSEKLAIAFGLI    GT +++
Sbjct: 539 YVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKI 598

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH   K IS I  R+I++RD  RFHHF+DG CSCGDYW
Sbjct: 599 VKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 30/241 (12%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y   G++D +  +F+     N+ +++A+I  +V++   +        M+  G+ PNA + 
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 202 SSVLLGCS-------HLSSLQLGKQ---------------------VHQLVFKSPLCKDT 233
           SSVL  CS       H  +++LG                         QL  K P  +  
Sbjct: 149 SSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE-RSL 207

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            +LT +++ Y K G+L+ A  LF  ++ +DVV WN MI GYAQ G   ++L+LF +M   
Sbjct: 208 VSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVA 267

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
              P+ +T +A+L AC   G ++ G ++  S + + GI       T ++D+  + G L +
Sbjct: 268 KAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCGSLED 326

Query: 354 A 354
           A
Sbjct: 327 A 327



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  + +  L  +      L   Y   G L+ +  +F      +V +++A+I  + Q  
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             ++A   + +M   G++P++ TF ++L +C+      L  Q         G+ +     
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAI-----KLGLGSDLYVR 179

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMP 362
           T +VD+  R G +V A  L  KMP
Sbjct: 180 TGLVDVYARGGDVVCARQLFDKMP 203


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/636 (38%), Positives = 358/636 (56%), Gaps = 70/636 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCI--------- 48
           K  V+WN+++A   +QRG+ ++A  LF ++       QP+ V++  +LS +         
Sbjct: 288 KDVVSWNAMIAA-NEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCG 346

Query: 49  -----------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                            + NS         +V  A + F+RL ++D  SWN+M++G+ Q 
Sbjct: 347 REIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQN 406

Query: 84  KNMAKARDLFLAM------PEKNSVSW-----SAMISG--YIECGQLDKAVELFKVAPVK 130
           +   +  D+F  M      P+ +S++      S   SG  Y   G+      L ++ P  
Sbjct: 407 EQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGG 466

Query: 131 -SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            S+    A++  Y KF ++  AEK+F  M  ++  +WNAM+ GY  N+  ED L +   +
Sbjct: 467 VSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDI 526

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV---FKSPLCKDTTAL----TPLISM 242
           +  G   +  SLS +L  C  L SLQLGKQ H +V   F    C    +L      LISM
Sbjct: 527 LKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISM 586

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG ++DA ++FL+++RKDV +W AMI+G A HG   +AL+LF++MK +G+KP+ +TF
Sbjct: 587 YSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTF 646

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK--K 360
           +ALL+AC H GLV  G  YFDSM NDYG++   +HY CM+DL GR+G+   A  L++   
Sbjct: 647 LALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGI 706

Query: 361 MPFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
             FKP       ++  LL AC   K+LDL   AA  +  L P + A  Y+ LAN+YA+  
Sbjct: 707 TLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEA-TYILLANLYASSG 765

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
            W+D  ++R +M++  + K  G SWI+ G   H F +GD  HP+   I+EKL +L    +
Sbjct: 766 LWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCR 825

Query: 477 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP-IRVFKNLRVCGDCH 535
             GYVP  E  LH V E  KE +L  HSEKLA++FGL+   +G   IRV KNLRVC DCH
Sbjct: 826 RMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCH 885

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
              K+ S +EKREI++RD+ RFH F+DG+CSCGDYW
Sbjct: 886 SWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 153/305 (50%), Gaps = 29/305 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS-G 79
           G L+DAQ +FD+          + L  +L NS  ++AA+  F    ++    +  M+S G
Sbjct: 170 GVLEDAQRVFDETSL-------LALDILLWNS--IIAAY-IFHGCWVEVLRLFCKMVSVG 219

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
            V    +  A  +  A        + AM+ G I              A +++   W +++
Sbjct: 220 VVAPTELTYA-SVVNACGSSGEEKYGAMVHGRI------------IKAGLEATNLWNSLV 266

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPN 197
           + Y K G +  A +LF+ +  K++V+WNAMIA   +    E+ L L R M+ +   ++PN
Sbjct: 267 TFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPN 326

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  S+L   S LS+L+ G+++H  +F+  L  DT+    LI+ Y KC ++  A ++F 
Sbjct: 327 RVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFE 386

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +D+++WN+M++GY Q+ +  +   +F +M   G++PDS +   +    N A     
Sbjct: 387 RLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIF---NAASRDSS 443

Query: 318 GIQYF 322
           G+ YF
Sbjct: 444 GLIYF 448



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 37/267 (13%)

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
           ++  A++LFD  P +++++W+A+IA Y           L + M+G G++PN  SL+S+L 
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--RKDV 264
                  + L +Q+H    ++    D+      I+MY +CG LEDA ++F E      D+
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAG---------- 313
           + WN++I+ Y  HG   + LRLF KM   G + P  +T+ +++ AC  +G          
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHG 249

Query: 314 -LVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRA---------------GKLVEA 354
            ++  G++    ++S+V  YG      H + + + + R                G+   A
Sbjct: 250 RIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENA 309

Query: 355 VDLIKKM-----PFKPQPAIFGTLLSA 376
           + L ++M     P +P    F +LLSA
Sbjct: 310 LGLFRRMLKVEPPVQPNRVTFLSLLSA 336


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/504 (42%), Positives = 312/504 (61%), Gaps = 36/504 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFF 62
           + TV+WNS++ G+ K  G   +++ LF  +P  +VVS+N M++ CI    + +  A+ +F
Sbjct: 4   RDTVSWNSIITGYWKN-GCFDESKRLFGLMPTKNVVSWNSMIAGCI--EDERIDEAWQYF 60

Query: 63  QRLPIKDTASWNTMISGFVQ---------------KKN----------------MAKARD 91
           Q +P ++TASWN MISG V+               ++N                + +AR 
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           LF  MP+KN VSW+ MISGY+E G+ D+A  LF+  P K++VA TAMI+GY K GK D A
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKA 180

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
           + LFD++P ++L +WNAMI GY +N   E+ LKL   M+ +G++P+ S+L SVL  CS L
Sbjct: 181 KILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL 240

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           +SLQ G++ H LV KS      +    LI+MYCKCG + D+   F +I   DVV+WNAMI
Sbjct: 241 ASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMI 300

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           + +A+HG  ++AL  F +M+   ++PD ITF++LL AC HAG V   + +F+SM+  Y I
Sbjct: 301 AAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKI 360

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
             +P+H+ C+VD+L R G++ +A  +I++MPF+    I+G LL+AC VH  + L E AA 
Sbjct: 361 VPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAK 420

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            +  L P N +G YV L+NIYAA   W +V R+R  M+E  V K P YSW+E+   VH F
Sbjct: 421 KIVELEPQN-SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFF 479

Query: 452 RSGDRVHPELVSIHEKLKELEKRM 475
              D  HPE+  I  +LK ++ +M
Sbjct: 480 LGDDASHPEIHRIRLELKGMKLQM 503



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 158/282 (56%), Gaps = 48/282 (17%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTMISGFVQKKNMAK 88
           +P  D VS+N +++    N       FD  +RL    P K+  SWN+MI+G ++ + + +
Sbjct: 1   MPHRDTVSWNSIITGYWKN-----GCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDE 55

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
           A   F AMP++N+ SW+AMISG +   ++++A  LF+  P ++V+++TAM+ GY K G++
Sbjct: 56  AWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEI 115

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           + A  LF+ MP KN+V+W  MI+GYVEN   ++   L   M      P+           
Sbjct: 116 EQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PD----------- 158

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
                                 K+  A+T +I+ YCK G  + A  LF +I  +D+ +WN
Sbjct: 159 ----------------------KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWN 196

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           AMI+GYAQ+G GE+AL+L  +M   GM+PD  T +++L AC+
Sbjct: 197 AMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 238


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/507 (42%), Positives = 313/507 (61%), Gaps = 36/507 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAF 59
           M  + TV+WNS++ G+ K  G   +++ LF  +P  +VVS+N M++ CI    + +  A+
Sbjct: 73  MPHRDTVSWNSIITGYWKN-GCFDESKRLFGLMPTKNVVSWNSMIAGCI--EDERIDEAW 129

Query: 60  DFFQRLPIKDTASWNTMISGFVQ---------------KKN----------------MAK 88
            +FQ +P ++TASWN MISG V+               ++N                + +
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
           AR LF  MP+KN VSW+ MISGY+E G+ D+A  LF+  P K++VA TAMI+GY K GK 
Sbjct: 190 ARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKT 249

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D A+ LFD++P ++L +WNAMI GY +N   E+ LKL   M+ +G++P+ S+L SVL  C
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           S L+SLQ G++ H LV KS      +    LI+MYCKCG + D+   F +I   DVV+WN
Sbjct: 310 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 369

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI+ +A+HG  ++AL  F +M+   ++PD ITF++LL AC HAG V   + +F+SM+  
Sbjct: 370 AMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXS 429

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           Y I  +P+H+ C+VD+L R G++ +A  +I++MPF+    I+G LL+AC VH  + L E 
Sbjct: 430 YKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGEL 489

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           AA  +  L P N +G YV L+NIYAA   W +V R+R  M+E  V K P YSW+E+   V
Sbjct: 490 AAKKIVELEPQN-SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKV 548

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRM 475
           H F   D  HPE+  I  +LK ++ +M
Sbjct: 549 HFFLGDDASHPEIHRIRLELKGMKLQM 575



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 171/304 (56%), Gaps = 48/304 (15%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----P 66
           +V  G   + G +  A+++FD++P  D VS+N +++    N       FD  +RL    P
Sbjct: 51  NVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKN-----GCFDESKRLFGLMP 105

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            K+  SWN+MI+G ++ + + +A   F AMP++N+ SW+AMISG +   ++++A  LF+ 
Sbjct: 106 TKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEE 165

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V+++TAM+ GY K G+++ A  LF+ MP KN+V+W  MI+GYVEN   ++   L 
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLF 225

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M      P+                                 K+  A+T +I+ YCK 
Sbjct: 226 EQM------PD---------------------------------KNIVAMTAMITGYCKE 246

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G  + A  LF +I  +D+ +WNAMI+GYAQ+G GE+AL+L  +M   GM+PD  T +++L
Sbjct: 247 GKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVL 306

Query: 307 LACN 310
            AC+
Sbjct: 307 TACS 310



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 45/285 (15%)

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
            K+   + V A+   I    + G +  A ++FDEMP ++ V+WN++I GY +N   ++  
Sbjct: 39  IKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESK 98

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL-------------------- 223
           +L     GL    N  S +S++ GC     +    Q  Q                     
Sbjct: 99  RLF----GLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYD 154

Query: 224 -------VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
                  +F+    ++  + T ++  Y K G++E A  LF  + +K+VV+W  MISGY +
Sbjct: 155 RVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVE 214

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKP 335
           +GK ++A  LF++M D+ +    +   A++      G  D     FD +   D       
Sbjct: 215 NGKFDEAENLFEQMPDKNI----VAMTAMITGYCKEGKTDKAKILFDQIPCRDLA----- 265

Query: 336 DHYTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
             +  M+    + G   EA+ L   + KM  +P  +   ++L+AC
Sbjct: 266 -SWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 20/224 (8%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
             +Q H L  K    +D  A    I    + G++  A ++F E+  +D V+WN++I+GY 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYW 89

Query: 276 QHGKGEKALRLFDKMKDEGMKP--DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           ++G  +++ RLF      G+ P  + +++ +++  C     +D   QYF +M      + 
Sbjct: 90  KNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTAS- 142

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF-AAMN 392
               +  M+  L R  ++ EA  L ++MP +        +     V     + E   A  
Sbjct: 143 ----WNAMISGLVRYDRVEEASRLFEEMPRR------NVISYTAMVDGYAKIGEIEQARA 192

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           LFN  P      +  + + Y    K+D+   +   M + N+V M
Sbjct: 193 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM 236


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/519 (41%), Positives = 311/519 (59%), Gaps = 9/519 (1%)

Query: 61   FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-AMISGYIECG---Q 116
             FQ     D A WN M+ G++   +  KA +LF  + +    S    + +    CG    
Sbjct: 1063 LFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVL 1122

Query: 117  LDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            LD+  ++     K      +   + ++  Y+K G +  A  +F+ +   + V W +MI+G
Sbjct: 1123 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 1182

Query: 173  YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
             V+N   +  L++   M    + P+  + ++++   S +++L+ G+Q+H  V K     D
Sbjct: 1183 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 1242

Query: 233  TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                T L+ MY KCG++EDA +LF ++  +++  WNAM+ G AQHG  E+A+ LF  MK 
Sbjct: 1243 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 1302

Query: 293  EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             G++PD ++F+ +L AC+HAGL     +Y  SM NDYGI  + +HY+C+VD LGRAG + 
Sbjct: 1303 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 1362

Query: 353  EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            EA  +I+ MPFK   +I   LL ACR+   ++  +  A  LF L P ++A  YV L+NIY
Sbjct: 1363 EADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSA-AYVLLSNIY 1421

Query: 413  AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
            AA  +WDDV   R  MK  NV K PG+SWI+V  ++H F   DR HP+   I++K++E+ 
Sbjct: 1422 AAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMM 1481

Query: 473  KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            K ++  GYVPD EF L  V +E KE+ L +HSEKLAIA+GLI  P  T IRV KNLRVCG
Sbjct: 1482 KTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCG 1541

Query: 533  DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH A KYIS + +REI++RD  RFHHF+DG CSCGDYW
Sbjct: 1542 DCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 19/348 (5%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS-----WSA 106
            A + F  +   D  SWN+MIS   Q     ++ +LF+ +      P+  +++      S+
Sbjct: 958  AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSS 1017

Query: 107  MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
            +I G     Q+   V   K   +      T +I  Y K GK++ AE LF      +L  W
Sbjct: 1018 LIDGLNISRQIH--VHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACW 1075

Query: 167  NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            NAM+ GY+  +  +  L+L  ++   G + +  +L++    C  L  L  GKQ+H    K
Sbjct: 1076 NAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK 1135

Query: 227  SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
            +    D    + ++ MY KCGD+ +A  +F  I   D V W +MISG   +G  ++ALR+
Sbjct: 1136 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRI 1195

Query: 287  FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            + +M+   + PD  TF  L+ A +    ++ G Q   +++      + P   T +VD+  
Sbjct: 1196 YHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK-LDCVSDPFVGTSLVDMYA 1254

Query: 347  RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            + G + +A  L KKM  +   A++  +L     H   +     A+NLF
Sbjct: 1255 KCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNLF 1297



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 175/406 (43%), Gaps = 66/406 (16%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML----SCILLNSDDVVAAFDFFQRL 65
            N++L  ++K  G L  A+++FD  P+ D+V++N +L    + +  N  +       F RL
Sbjct: 660  NNLLTMYSKC-GSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RL 717

Query: 66   PIKDTASWNTMISGFVQKKNMAK----ARDLFLAMPEKNSVSWSAMISG-----YIECGQ 116
                  S   M    V K  +      A +       K  + W   +SG     Y +CG+
Sbjct: 718  LRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGR 777

Query: 117  LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL------------- 163
            +  A  LF     + VV W  M+ GY++ G    A +LF E     L             
Sbjct: 778  MRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNG 837

Query: 164  ---VTWNA------MIAGYV--------------------ENSWAED---GLKLLRMMIG 191
               V W+        +  Y                     E  WA D    ++    M G
Sbjct: 838  VSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNG 897

Query: 192  LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            L I  +A +L  VL   +    L+LGKQVH +  KS L  D +    L++MY K G    
Sbjct: 898  LNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 957

Query: 252  ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
            A ++F +++  D+++WN+MIS  AQ    E+++ LF  +  EG+KPD  T  ++L AC  
Sbjct: 958  AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRAC-- 1015

Query: 312  AGLVDLGIQYFDSM-VNDYGIAAKPDHY--TCMVDLLGRAGKLVEA 354
            + L+D G+     + V+        D +  T ++D+  ++GK+ EA
Sbjct: 1016 SSLID-GLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEA 1060



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
            D+V A   F  +   D  +W +MISG V   N  +A  ++  M +     +  +++ +I 
Sbjct: 1157 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 1216

Query: 110  GYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                   L++  +L     K+  V      T+++  Y K G ++ A +LF +M  +N+  
Sbjct: 1217 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 1276

Query: 166  WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
            WNAM+ G  ++  AE+ + L + M   GI P+  S   +L  CSH
Sbjct: 1277 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 1321



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L LGK  H  +  S    D      L++MY KCG L  A ++F     +D+VTWNA++ 
Sbjct: 636 NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 273 GYA-----QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            YA       G  ++ L LF  ++        +T   +L  C ++G
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 741



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 9/128 (7%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
            ++  A+  F+++ +++ A WN M+ G  Q  N  +A +LF +M     E + VS+  ++S
Sbjct: 1258 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 1317

Query: 110  GYIECGQLDKAVELFKVAPVK-----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                 G   +A E     P        +  ++ ++    + G V  A+K+ + MP K   
Sbjct: 1318 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 1377

Query: 165  TWNAMIAG 172
            + N  + G
Sbjct: 1378 SINRALLG 1385


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 315/527 (59%), Gaps = 13/527 (2%)

Query: 57  AAFD---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYI 112
           A FD    F+ +P KD  SW  MI G+ +     +A   F  M  E+ ++    + S   
Sbjct: 156 AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 215

Query: 113 ECGQLDKA-------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLV 164
            CG L            + K+     +    A+   Y K G ++ A  +F  +   +N+V
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           ++  +I GYVE    E GL +   +   GI PN  + SS++  C++ ++L+ G Q+H  V
Sbjct: 276 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K    +D    + L+ MY KCG LE A + F EI     + WN+++S + QHG G+ A+
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 395

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           ++F++M D G+KP++ITF++LL  C+HAGLV+ G+ YF SM   YG+    +HY+C++DL
Sbjct: 396 KIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 455

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG+L EA + I +MPF+P    + + L ACR+H   ++ + AA  L  L P N +G 
Sbjct: 456 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN-SGA 514

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
            V L+NIYA  ++W+DV  +R+ M++ NV K+PGYSW++VG   H F + D  HP   +I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAI 574

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +EKL  L  ++K AGYVP  +     + + +KE+LL  HSE++A+AF LI +P+G PI V
Sbjct: 575 YEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIV 634

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH A K+IS +  R+IIVRD +RFHHF DG+CSCGDYW
Sbjct: 635 KKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 139/274 (50%), Gaps = 34/274 (12%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +++ Y K G++D A KLFD MP +NLV+W AMI+G  +NS   + ++    M   G  P 
Sbjct: 46  LVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPT 105

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + SS +  C+ L S+++GKQ+H L  K  +  +    + L  MY KCG + DACK+F 
Sbjct: 106 QFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFE 165

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN------- 310
           E+  KD V+W AMI GY++ G+ E+AL  F KM DE +  D     + L AC        
Sbjct: 166 EMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKF 225

Query: 311 ----HAGLVDLGIQY-----------------FDSMVNDYGIAAKPDH---YTCMVDLLG 346
               H+ +V LG +                   +S  N +GI ++  +   YTC++D   
Sbjct: 226 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 285

Query: 347 RAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
              ++ + + +   +++   +P    F +L+ AC
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKAC 319



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 11/332 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIE 113
           A   F  +P ++  SW  MISG  Q    ++A   F  M     V    ++S+ I     
Sbjct: 59  ALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACAS 118

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G ++   ++     K      +   + +   Y K G +  A K+F+EMP K+ V+W AM
Sbjct: 119 LGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAM 178

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY +    E+ L   + MI   +  +   L S L  C  L + + G+ VH  V K   
Sbjct: 179 IDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF 238

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
             D      L  MY K GD+E A  +F ++ + ++VV++  +I GY +  + EK L +F 
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +++ +G++P+  TF +L+ AC +   ++ G Q   + V        P   + +VD+ G+ 
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKC 357

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           G L +A+    ++   P    + +L+S    H
Sbjct: 358 GLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQH 388



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + ++L+ V+   +    L+ GKQ+H L+  +     T     L++MY KCG+L+ A KLF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             + ++++V+W AMISG +Q+ K  +A+R F  M+  G  P    F + + AC   G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
           +G Q    +   +GI ++    + + D+  + G + +A  + ++MP K +
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 321/552 (58%), Gaps = 36/552 (6%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA----------------- 95
           D +  A + F  +P ++  SW  MIS + Q+   ++A +LF A                 
Sbjct: 292 DSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKL 351

Query: 96  --------MPEKNSVSWSAMIS------GYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                     E N  +++ +++      G+I   Q+   +   K+     V   ++++  
Sbjct: 352 SNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLI--IKLNYEDHVFVGSSLLDM 409

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K GK+  A  +F+ +P +++V+  A+I+GY +    E+ L+L R + G G++ N  + 
Sbjct: 410 YAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTY 469

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           + VL   S L++L LGKQVH  V +S +         LI MY KCG+L  + ++F  +  
Sbjct: 470 TGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 529

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQ 320
           + V++WNAM+ GY++HG+G + L+LF  M++E  +KPDS+T +A+L  C+H GL D G+ 
Sbjct: 530 RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLN 589

Query: 321 YFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
            F+ M +    +  K +HY C+VDLLGR+G++ EA + IKKMPF+P  AI+G+LL ACRV
Sbjct: 590 IFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 649

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H  +D+ EFA   L  + P NA G YV L+N+YA+  +W+DV+ +R  M +  V K PG 
Sbjct: 650 HSNVDIGEFAGQQLLEIEPGNA-GNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGR 708

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           S IE+  V+H F + DR HP    I  K+KEL    K  GYVPDL   LH V EE KE++
Sbjct: 709 SSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKI 768

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           LL HSEKLA++FGLI  P   PIRV KNLR+C DCH   KYIS +  RE+ +RD  RFH 
Sbjct: 769 LLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHR 828

Query: 560 FKDGTCSCGDYW 571
              G CSC DYW
Sbjct: 829 IVGGKCSCEDYW 840



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           + K   + SV   T +I  Y K   +  A  +FDEMP +N+V+W AMI+ Y +  +A   
Sbjct: 269 MIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQA 328

Query: 183 LKLLRMMIGLGI---------------------RPNASSLSSVLLGCSHLSSLQLGKQVH 221
           L L    + + +                      PN  + ++VL  C+      LG+Q+H
Sbjct: 329 LNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIH 388

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            L+ K          + L+ MY K G + +A  +F  +  +DVV+  A+ISGYAQ G  E
Sbjct: 389 SLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDE 448

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +AL LF +++ EGMK + +T+  +L A +    +DLG Q  + ++    I +       +
Sbjct: 449 EALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRS-EIPSFVVLQNSL 507

Query: 342 VDLLGRAGKLVEAVDLIKKM 361
           +D+  + G L  +  +   M
Sbjct: 508 IDMYSKCGNLTYSRRIFDTM 527



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 31/203 (15%)

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           LL+M +  G      + +++L  C +  + + G++VH  + K+         T LI +Y 
Sbjct: 231 LLQMALH-GFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYT 289

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF--------------DKM 290
           KC  L DA  +F E+  ++VV+W AMIS Y+Q G   +AL LF              DK+
Sbjct: 290 KCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKL 349

Query: 291 KDEG-------MKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DYGIAAKPDHY---T 339
           K           +P+  TF  +L +C  +    LG Q    ++  +Y      DH    +
Sbjct: 350 KLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNY-----EDHVFVGS 404

Query: 340 CMVDLLGRAGKLVEAVDLIKKMP 362
            ++D+  + GK+ EA  + + +P
Sbjct: 405 SLLDMYAKDGKIHEARTVFECLP 427



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  GK+ +A+ +F+ +P+ DVVS   ++S    L  D+   A + F+RL  +
Sbjct: 404 SSLLDMYAKD-GKIHEARTVFECLPERDVVSCTAIISGYAQLGLDE--EALELFRRLQGE 460

Query: 69  DTASWNTMISGFVQKKNMAKARDL------FLAMPEKNS--VSWSAMISGYIECGQLDKA 120
              S     +G +   +   A DL       +   E  S  V  +++I  Y +CG L  +
Sbjct: 461 GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYS 520

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NLVTWNAMIAGYVE 175
             +F     ++V++W AM+ GY K G+     KLF  M  +     + VT  A+++G   
Sbjct: 521 RRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSH 580

Query: 176 NSWAEDGLKLLRMM 189
               + GL +   M
Sbjct: 581 GGLEDKGLNIFNDM 594


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/510 (42%), Positives = 301/510 (59%), Gaps = 47/510 (9%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY----------MKFGK------- 147
           +A++  Y +CG++  A E+F    ++ VV WTAMI+ Y          M F K       
Sbjct: 171 AALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFL 230

Query: 148 ----------------------VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                                 +  A  +FD M  +N ++WN+M++GY +N    D L L
Sbjct: 231 GDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 290

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M      PN  +   ++  CS+L S  LG+++H  V  S +  DTT    ++ MY K
Sbjct: 291 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 350

Query: 246 CGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
           CGDL+ A ++F   E+  +DV +WN +ISGY  HG G++AL LF +M+ EG++P+ ITF 
Sbjct: 351 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFT 410

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKM 361
           ++L AC+HAGL+D G + F  M     ++ +P+  HY CMVD+LGRAG L EA  LIKK+
Sbjct: 411 SILSACSHAGLIDEGRKCFADMTK---LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKI 467

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P +P   ++G LL ACR+H   +L E AA NLF L P +  G YV ++NIYAA  KW +V
Sbjct: 468 PSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT-GYYVLMSNIYAASNKWKEV 526

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
             +R +MK   + K   +S IE GT VH F + D+  P    ++ K++ L   MK+ GYV
Sbjct: 527 EMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYV 586

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PDL   LH V  E KE LL +HSEKLA+AFG++K+  G PI+V KNLRVC DCH A K+I
Sbjct: 587 PDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFI 646

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S+I  R+IIVRD  RFHHF+ G CSCGDYW
Sbjct: 647 SSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 51/311 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
           G++ DA E+FD++   DVV +  M++ +   ++  + A   F+++     + D  +  ++
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMIT-LYEQAERPLKALMLFRKMQEEGFLGDEITAISV 239

Query: 77  ISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA----- 127
            S   Q    +  +++AR +F  M E+N +SW++M+SGY + G+   A+ LF        
Sbjct: 240 ASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASEC 299

Query: 128 ---PVKSVVAWT-------------------------------AMISGYMKFGKVDLAEK 153
              PV +++  +                               A++  YMK G +D A +
Sbjct: 300 DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVE 359

Query: 154 LFD--EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
           +F+  E+  +++ +WN +I+GY  +   ++ L+L   M   G+ PN  + +S+L  CSH 
Sbjct: 360 MFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHA 419

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAM 270
             +  G++    + K  +  +      ++ M  + G L +A +L  +I  R     W A+
Sbjct: 420 GLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGAL 479

Query: 271 ISGYAQHGKGE 281
           +     HG  E
Sbjct: 480 LLACRIHGNTE 490



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 20/251 (7%)

Query: 142 YMKFGKVDLAEKLFDE--------MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           Y K G +  A  LFD             N    N M+  Y     + + + L   M  +G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  N  +   VL  C+       G+ VH  V ++    D      L+ MY KCG++ DA 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  +  +DVV W AMI+ Y Q  +  KAL LF KM++EG   D IT +++  A    G
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247

Query: 314 LVDLGIQ----YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQ 366
              + I      FD M    GI+     +  M+    + G+  +A+ L  +M      P 
Sbjct: 248 DGRMAISRARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPN 302

Query: 367 PAIFGTLLSAC 377
           P     ++SAC
Sbjct: 303 PVTALIMVSAC 313



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 116/244 (47%), Gaps = 23/244 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILLNSDDV 55
           M  +  ++WNS+L+G+  Q G+  DA  LF+++      P+ V+  IM+S C  L S  +
Sbjct: 263 MEERNGISWNSMLSGYT-QNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL 321

Query: 56  ---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISG 110
              +  F    ++ I DT   N ++  +++  ++  A ++F    + E++  SW+ +ISG
Sbjct: 322 GRKLHNFVISSKMDI-DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 380

Query: 111 YIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPT----KN 162
           Y   G   +A+ELF    V+ V    + +T+++S     G +D   K F +M        
Sbjct: 381 YGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPE 440

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +  +  M+       +  +  +L++ +     RP+     ++LL C    + +LG+    
Sbjct: 441 MKHYACMVDMLGRAGFLNEAFRLIKKIPS---RPSDEVWGALLLACRIHGNTELGEIAAN 497

Query: 223 LVFK 226
            +F+
Sbjct: 498 NLFQ 501


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/521 (41%), Positives = 319/521 (61%), Gaps = 13/521 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMIS---GY--I 112
           F  +  ++  SW  MISG+ Q+   ++A  LF+ M     E N  +++ ++S   G+   
Sbjct: 68  FDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGF 127

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           E G+   +  +FK      +   ++++  Y K G++  A  +F+ +P +++V+  A+I+G
Sbjct: 128 ELGRQIHS-HIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISG 186

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +    E+ L+L   +   G+  N  + +S+L   S L++L  GKQVH  V +  L   
Sbjct: 187 YAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFY 246

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 LI MY KCG+L  A K+F  +  + V++WNAM+ GY++HGKG + ++LF  M++
Sbjct: 247 VVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMRE 306

Query: 293 EG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG-IAAKPDHYTCMVDLLGRAGK 350
           E  +KPDS+TF+A+L  C+H GL D G++ FD M+N    I A  +HY C++DLLGRAG+
Sbjct: 307 ENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGR 366

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           + EA +LIKKMPF+P  AI+G+LL ACRVH   ++ EF    L  + P NA G YV L+N
Sbjct: 367 VEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENA-GNYVILSN 425

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           +YA+  +W+DV  +R  M E  V+K PG SWIE+   +H F + DR HP    +  K++E
Sbjct: 426 LYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRE 485

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L  + K +GYVPD    L+ V EE KE++LL HSEKLA+AFGLI    G P+RV KNLR+
Sbjct: 486 LLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRI 545

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           C DCH   K++S +  R++ +RD  RFHH   G CSCGDYW
Sbjct: 546 CVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 9/246 (3%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           + K   +  V   T +I  Y K   +  A  +FDEM  +N+V+W AMI+GY +  +A + 
Sbjct: 36  MIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEA 95

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L L   M+     PN  + ++VL  C+  S  +LG+Q+H  +FK          + L+ M
Sbjct: 96  LHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDM 155

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y K G + +A  +F  +  +DVV+  A+ISGYAQ G  E+AL LF +++ EGM  + +T+
Sbjct: 156 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTY 215

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLI 358
            +LL A +    +D G Q     V+ + +  +   Y      ++D+  + G L  A  + 
Sbjct: 216 ASLLTALSGLAALDHGKQ-----VHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIF 270

Query: 359 KKMPFK 364
             MP +
Sbjct: 271 NNMPVR 276



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C +  +++ G++VH  + K+         T LI +Y KC  L  A  +F E++ ++VV+W
Sbjct: 20  CVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSW 79

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV- 326
            AMISGY+Q G   +AL LF +M     +P+  TF  +L +C      +LG Q    +  
Sbjct: 80  TAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFK 139

Query: 327 NDYGIAAKPDHY---TCMVDLLGRAGKLVEAVDLIKKMP 362
            +Y      +H    + ++D+  +AG++ EA  + + +P
Sbjct: 140 RNY-----ENHIFVGSSLLDMYAKAGRIHEARGVFECLP 173



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 19/199 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  G++ +A+ +F+ +P+ DVVS   ++S    L  D+   A + F RL  +
Sbjct: 150 SSLLDMYAKA-GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE--EALELFCRLQRE 206

Query: 69  DT-------ASWNTMISGF--VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
                    AS  T +SG   +       +  L   +P    V  +++I  Y +CG L+ 
Sbjct: 207 GMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP-FYVVLQNSLIDMYSKCGNLNY 265

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-----LVTWNAMIAGYV 174
           A ++F   PV++V++W AM+ GY K GK     KLF  M  +N      VT+ A+++G  
Sbjct: 266 ARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCS 325

Query: 175 ENSWAEDGLKLLRMMIGLG 193
                + GL++   M+  G
Sbjct: 326 HGGLEDKGLEMFDEMMNGG 344


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/574 (37%), Positives = 341/574 (59%), Gaps = 15/574 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  + K R   + A+ +F+ +P  DV+S+  M SC  +N   +  A   F+++ +  
Sbjct: 117 NALIDMYGKCRCS-EGARLVFEGMPFRDVISWTSMASC-YVNCGLLREALGAFRKMGLNG 174

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV 121
              ++ + ++++      K++   R++   +       N    SA+++ Y  C  + +A 
Sbjct: 175 ERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQ 234

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENS 177
            +F     +  V+W  +I+ Y    + +    +F  M ++    N  +WNA+I G ++N 
Sbjct: 235 LVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNG 294

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             E  L++L  M   G +PN  +++SVL  C++L SL+ GKQ+H  +F+    +D T  T
Sbjct: 295 RTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTT 354

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            L+ MY KCGDLE + ++F  + ++D V+WN MI   + HG GE+AL LF +M D G++P
Sbjct: 355 ALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRP 414

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           +S+TF  +L  C+H+ LVD G+  FDSM  D+ +    DH++CMVD+L RAG+L EA + 
Sbjct: 415 NSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEF 474

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           IKKMP +P    +G LL  CRV+K ++L   AA  LF +   N  G YV L+NI  + K 
Sbjct: 475 IKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDN-PGNYVLLSNILVSAKL 533

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + +  R  M++  V K PG SWI+V   VH F  GD+ + +   I+  L  + ++M++
Sbjct: 534 WSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRI 593

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
           AGY+P+ +F L  V +E KE++L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A
Sbjct: 594 AGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNA 653

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K+++ I   +IIVRD+ RFHHF+DG CSC D+W
Sbjct: 654 IKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 137/298 (45%), Gaps = 12/298 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI-- 108
           NS D+  A   F ++P  D  +W  +IS   +     +A   +     KN V    ++  
Sbjct: 23  NSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLL 82

Query: 109 SGYIECGQLDKAVELFKVAP-------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           S    C  L   +   +V            V+   A+I  Y K    + A  +F+ MP +
Sbjct: 83  SVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFR 142

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++++W +M + YV      + L   R M   G RPN+ ++SS+L  C+ L  L+ G++VH
Sbjct: 143 DVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVH 202

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             V ++ +  +    + L++MY  C  +  A  +F  + R+D V+WN +I+ Y  + + E
Sbjct: 203 GFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECE 262

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
           K L +F +M  EG+  +  ++ A++  C   G  +  ++    M N      KP+  T
Sbjct: 263 KGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS---GFKPNQIT 317



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPN 197
           I  Y   G +  A  LFD++P  +L TW  +I+   ++  + + ++          + P+
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              L SV   C+ L  +   K+VH+   +   C D      LI MY KC   E A  +F 
Sbjct: 78  KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            +  +DV++W +M S Y   G   +AL  F KM   G +P+S+T  ++L AC
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPAC 189



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 16/181 (8%)

Query: 229 LCKDTTALTP-----LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           L K  T+L P      I +Y   GDL+ A  LF +I + D+ TW  +IS   +HG+  +A
Sbjct: 2   LSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEA 61

Query: 284 LRLFDKMKDEG-MKPDSITFVALLLACNHAGLVD-LGIQYFDSMVNDYGIAAKPDHYTCM 341
           ++ ++  + +  ++PD +  +++  AC  A L D +  +        +G  +       +
Sbjct: 62  IQYYNDFRHKNCVEPDKLLLLSVAKAC--ASLRDVMNAKRVHEDAIRFGFCSDVLLGNAL 119

Query: 342 VDLLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACRVH---KRLDLAEFAAMNLFNLN 397
           +D+ G+  +  E   L+ + MPF+    I  T +++C V+    R  L  F  M L    
Sbjct: 120 IDMYGKC-RCSEGARLVFEGMPFR--DVISWTSMASCYVNCGLLREALGAFRKMGLNGER 176

Query: 398 P 398
           P
Sbjct: 177 P 177


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/511 (40%), Positives = 309/511 (60%), Gaps = 9/511 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQL-----DKAVE 122
           D  +WN M+SG+ Q  +  K  +LF  M ++   S    ++  ++ CG L      K V 
Sbjct: 488 DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVH 547

Query: 123 LFKVAPVKSVVAW--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            + +     +  W  + ++  Y+K G +  A+  FD +P  + V W  +I+G +EN   E
Sbjct: 548 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEE 607

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L +   M  +G+ P+  +++++    S L++L+ G+Q+H    K     D    T L+
Sbjct: 608 RALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLV 667

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG ++DA  LF  I+  ++  WNAM+ G AQHG+G++AL+LF +M+  G+KPD +
Sbjct: 668 DMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKV 727

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +L AC+H+GLV    +Y  SM  DYGI  + +HY+C+ D LGRAG + EA +LI  
Sbjct: 728 TFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDS 787

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           M  +   +++ TLL+ACRV    +  +  A  L  L P +++  YV L+N+YAA  KWD+
Sbjct: 788 MSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA-YVLLSNMYAAASKWDE 846

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           +   R  MK + V K PG+SWIEV   +H F   DR +P+   I++K+K++ + +K  GY
Sbjct: 847 MKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGY 906

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VP+ +F L  V EE KE+ L +HSEKLA+AFGL+  P  TPIRV KNLRVCGDCH A KY
Sbjct: 907 VPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKY 966

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS +  REI++RD  RFH FKDG CSCGDYW
Sbjct: 967 ISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 192/451 (42%), Gaps = 73/451 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL-----NSDDVVAAFDFFQRLPIKDTASWNT 75
           GK+K+ + LF+++P  DVV +N+ML   L       + D+ +AF      P + T    +
Sbjct: 201 GKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLS 260

Query: 76  MISG----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ--------------- 116
            ISG      Q K+     D   A      +S + ++SGY+  GQ               
Sbjct: 261 RISGDDSEAGQVKSFENGND---ASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESD 317

Query: 117 -----------LDKAVELFKVAPVKSV-------------VAWTAMISGYMKFGKVDLAE 152
                      L  AV L  +A  + V                 ++I+ Y K  K+ LA 
Sbjct: 318 LECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLAR 377

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL- 211
            +F+ M  ++L++WN++IAG  ++    + + L   ++  G++P+  +++SVL   S L 
Sbjct: 378 TVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLP 437

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
             L L KQ+H    K+    D+   T LI  Y +   +++A  LF      D+V WNAM+
Sbjct: 438 EGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMM 496

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGY Q   G K L LF  M  +G + D  T   +L  C     ++ G Q     V+ Y I
Sbjct: 497 SGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQ-----VHAYAI 551

Query: 332 AAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC--RVHKRLDL 385
            +  D      + ++D+  + G +  A      +P  P    + TL+S C     +   L
Sbjct: 552 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERAL 610

Query: 386 AEFAAMNLFNLNP--------ANAAGCYVQL 408
             F+ M L  + P        A A+ C   L
Sbjct: 611 HVFSQMRLMGVLPDEFTIATLAKASSCLTAL 641



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 20/329 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQ-RGKLKDAQE---LFDKIPQPDVVSYNIMLSCIL---LNSD 53
           M  +  V+WNS+LA +A+   G +++ +E   LF  + Q  V +  + LS +L   L+S 
Sbjct: 107 MPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 166

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            V A+ + F     K     +  ++G     +++   + + R LF  MP ++ V W+ M+
Sbjct: 167 YVCAS-ESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLML 225

Query: 109 SGYIECGQLDKAVELFK------VAPVKSVVAWTAMISGY-MKFGKVDLAEKLFDEMPTK 161
             Y+E G  ++A++L        + P +  +   + ISG   + G+V   E   D     
Sbjct: 226 KAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVS 285

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            +++ N +++GY+        LK    M+   +  +  +   VL     L SL LG+QVH
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            +  K  L    T    LI+MYCK   +  A  +F  +  +D+++WN++I+G AQ     
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEV 405

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A+ LF ++   G+KPD  T  ++L A +
Sbjct: 406 EAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 5/170 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA-----EDGLKLLRMMIGL 192
           +IS Y K G +  A ++FD+MP ++LV+WN+++A Y ++S       ++   L R++   
Sbjct: 87  LISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQD 146

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            +  +  +LS +L  C H   +   +  H    K  L  D      L+++Y K G +++ 
Sbjct: 147 VVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEG 206

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
             LF E+  +DVV WN M+  Y + G  E+A+ L       G+ P+ IT 
Sbjct: 207 RVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAM 107
           D+ AA   F  +P+ D  +W T+ISG ++     +A  +F  M      P++ +++  A 
Sbjct: 574 DMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAK 633

Query: 108 ISGYIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            S  +   +  + +     K+         T+++  Y K G +D A  LF  +   N+  
Sbjct: 634 ASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA 693

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           WNAM+ G  ++   ++ L+L + M  LGI+P+  +   VL  CSH
Sbjct: 694 WNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSH 738



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           S L LGK  H  +       +   +  LISMY KCG L  A ++F ++  +D+V+WN+++
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 272 SGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           + YAQ  +G     ++A  LF  ++ + +    +T   +L  C H+G V    + F    
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-CASESFHGYA 178

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              G+         +V++  + GK+ E   L ++MP++
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR 216



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 127/300 (42%), Gaps = 32/300 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ-RL--PIKDTASWNTMI 77
           G +  AQ  FD IP PD V++  ++S  + N ++  A   F Q RL   + D  +  T+ 
Sbjct: 573 GDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLA 632

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                   + + R +     + N  S     ++++  Y +CG +D A  LFK   + ++ 
Sbjct: 633 KASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNIT 692

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLR-M 188
           AW AM+ G  + G+   A +LF +M +  +    VT+  +++    +    +  K +R M
Sbjct: 693 AWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSM 752

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY----- 243
               GI+P     S +      L    L K+   L+       D+ ++    SMY     
Sbjct: 753 HRDYGIKPEIEHYSCL---ADALGRAGLVKEAENLI-------DSMSMEASASMYRTLLA 802

Query: 244 -CKC-GDLEDACKL---FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            C+  GD E   ++    LE++  D   +  + + YA   K ++       MK   +K D
Sbjct: 803 ACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKD 862


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/505 (41%), Positives = 311/505 (61%), Gaps = 21/505 (4%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAPVKSVVAW---- 135
           +  AR++   MPE+N VSW+AMISGY +  + D+A ELF       +  VK V A+    
Sbjct: 86  LEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKT 145

Query: 136 ---------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                    ++++  Y K   +  A ++FD +P +++V++ A+++GY +    E+ L L 
Sbjct: 146 NFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLF 205

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R++   G++ N  + +++L   S LSS+  GKQVH L+ +  L         LI MY KC
Sbjct: 206 RLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKC 265

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L  + ++F  +  + VV+WNAM+ GY +HG   + ++LF  M DE +KPDS+T +A+L
Sbjct: 266 GKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVL 324

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
              +H GLVD G+  FD +V +       +HY C++DLLGR+G+L +A++LI+KMPF+P 
Sbjct: 325 SGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPT 384

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            AI+G+LL ACRVH  + + EF A  L ++ P NA G YV L+NIYAA   W DV R+R 
Sbjct: 385 RAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENA-GNYVILSNIYAAAGMWKDVFRVRK 443

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M +  V+K PG SW+ +  V+H F S +R HP    I+ K+KE+   +K AG+VPDL  
Sbjct: 444 LMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPDLSC 503

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V +E KE++LL HSEKLAI FGL+  P    I+V KNLR+C DCH   K++S +  
Sbjct: 504 VLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYG 563

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI +RD  RFH   +G C+CGDYW
Sbjct: 564 REISLRDKNRFHLITEGACTCGDYW 588



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 27/230 (11%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y + G ++ A  + D MP +N+V+W AMI+GY +N   +   +L  MM+  GI 
Sbjct: 74  TRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIH 133

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
                                 KQVH    K+         + L+ MY K  ++++A ++
Sbjct: 134 QV--------------------KQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRV 173

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DVV++ A++SGY Q G  E+AL LF  + +EGM+ + +TF ALL A +    +
Sbjct: 174 FDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSM 233

Query: 316 DLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           D G Q    ++     + +A +      ++D+  + GKL+ +  +   MP
Sbjct: 234 DYGKQVHGLILRRELPFFMALQ----NSLIDMYSKCGKLLYSRRVFDSMP 279



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 59/293 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTAS------ 72
           G L+DA+ + D +P+ +VVS+  M+S    N   D     F    R  I           
Sbjct: 84  GALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAV 143

Query: 73  ----------WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                      ++++  + + +N+ +AR +F  +P ++ VS++A++SGY + G  ++A++
Sbjct: 144 KTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALD 203

Query: 123 LFKVAPVKSV----VAWTAMISG-----------------------------------YM 143
           LF++   + +    V +TA+++                                    Y 
Sbjct: 204 LFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYS 263

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           K GK+  + ++FD MP +++V+WNAM+ GY  +  A + ++L R M    ++P++ +L +
Sbjct: 264 KCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCD-EVKPDSVTLLA 322

Query: 204 VLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           VL G SH   +  G      +V +     +T     +I +  + G L+ A  L
Sbjct: 323 VLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNL 375



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C    +L+ G+QVH  +  +         T L+ MY +CG LEDA  +   +  ++VV+W
Sbjct: 45  CVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSW 104

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGM 295
            AMISGY+Q+ + ++A  LF  M   G+
Sbjct: 105 TAMISGYSQNERPDQAWELFIMMLRAGI 132


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/615 (36%), Positives = 356/615 (57%), Gaps = 46/615 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP---QPDVVSYNIMLSCILLNSDDVVA 57
           M ++  V+WN+++ G++ Q G  +++ +LF ++    +PD+++   +L       D    
Sbjct: 336 MVLRDAVSWNTMICGYS-QVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFG 394

Query: 58  AF--DFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  D+      + DT + N +I+ + +  N+  ++++F  M  K+SVSW++MI+ YI+ 
Sbjct: 395 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 454

Query: 115 GQLDKAVELFKVAPV--------------------------------------KSVVAWT 136
           G  D+A++LFK+                                          ++V   
Sbjct: 455 GSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSN 514

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            ++  Y K G++  + K+F+ M  ++++TWN +IA  V +     GL+++  M   G+ P
Sbjct: 515 TLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP 574

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + +++ S+L  CS L++ + GK++H  +FK  L  D      LI MY KCG L ++ ++F
Sbjct: 575 DMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF 634

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ KDVVTW A+IS    +G+G+KA+R F +M+  G+ PD + FVA++ AC+H+GLV+
Sbjct: 635 KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVE 694

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G+ YF  M  DY I  + +HY C+VDLL R+  L +A D I  MP KP  +I+G LLSA
Sbjct: 695 EGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSA 754

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR+    ++A+  +  +  LNP +  G YV ++N+YAA+ KWD V  IR S+K   + K 
Sbjct: 755 CRMSGDTEIAQRVSERIIELNP-DDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKD 813

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG SW+E+   V+ F +G +   +   +++ L  L   M   GY+ +L+F LH + E+ K
Sbjct: 814 PGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEK 873

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
             +L  HSE+LAIAFGL+    GTP++V KNLRVC DCH  TKYIS I +RE++VRD  R
Sbjct: 874 RDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANR 933

Query: 557 FHHFKDGTCSCGDYW 571
           FH FKDG CSCGDYW
Sbjct: 934 FHVFKDGACSCGDYW 948



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 178/336 (52%), Gaps = 13/336 (3%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           +D+  A   F+ +P++D  SWN++ISG+       +A +++        V  S  +S  +
Sbjct: 223 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVL 282

Query: 113 E-CGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
             CG L    E       + K+   K V+    ++S Y KF  +    ++FD+M  ++ V
Sbjct: 283 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 342

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WN MI GY +    E+ +KL   M+    +P+  +++S+L  C HL  L+ GK VH  +
Sbjct: 343 SWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYM 401

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
             S    DTTA   LI+MY KCG+L  + ++F  ++ KD V+WN+MI+ Y Q+G  ++A+
Sbjct: 402 ITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAM 461

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           +LF  MK + +KPDS+T+V LL      G + LG +    +    G  +       +VD+
Sbjct: 462 KLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK-MGFNSNIVVSNTLVDM 519

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             + G++ +++ + + M  +     + T++++C VH
Sbjct: 520 YAKCGEMGDSLKVFENMKAR-DIITWNTIIASC-VH 553



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 167/322 (51%), Gaps = 15/322 (4%)

Query: 54  DVVAAFDFFQRL-PIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           D  ++F  F+   P  +   WN++I         ++A  L+        + ++ ++ ++I
Sbjct: 122 DPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVI 181

Query: 109 SGYIECGQLD----KAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           +     G LD    K++   +  +     +    A+I  Y +F  +D A K+F+EMP ++
Sbjct: 182 NAC--AGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 239

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+WN++I+GY  N +  + L++      LG+ P++ ++SSVL  C  L S++ G  +H 
Sbjct: 240 VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 299

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+ K  + KD      L+SMYCK   L D  ++F ++  +D V+WN MI GY+Q G  E+
Sbjct: 300 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 359

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           +++LF +M ++  KPD +T  ++L AC H G ++ G    D M+   G          ++
Sbjct: 360 SIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILI 417

Query: 343 DLLGRAGKLVEAVDLIKKMPFK 364
           ++  + G L+ + ++   M  K
Sbjct: 418 NMYAKCGNLLASQEVFSGMKCK 439



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 198/427 (46%), Gaps = 53/427 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNS 52
           M ++  V+WNS+++G+    G   +A E++ +     VV  +  +S +L        +  
Sbjct: 235 MPLRDVVSWNSLISGY-NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEE 293

Query: 53  DDVVAAFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            D++      +++ I KD    N ++S + +   +   R +F  M  +++VSW+ MI GY
Sbjct: 294 GDIIHG--LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGY 351

Query: 112 IECGQLDKAVELF---------KVAPVKSVV----------------------------- 133
            + G  +++++LF          +  + S++                             
Sbjct: 352 SQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 411

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A   +I+ Y K G +  ++++F  M  K+ V+WN+MI  Y++N   ++ +KL +MM    
Sbjct: 412 ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-KTD 470

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           ++P++ +   +L   + L  L LGK++H  + K     +      L+ MY KCG++ D+ 
Sbjct: 471 VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 530

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K+F  ++ +D++TWN +I+           LR+  +M+ EG+ PD  T +++L  C+   
Sbjct: 531 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 590

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
               G +     +   G+ +       ++++  + G L  +  + K M  K     +  L
Sbjct: 591 AKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTAL 648

Query: 374 LSACRVH 380
           +SAC ++
Sbjct: 649 ISACGMY 655



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           SV+    +I+ Y  F     +  +F    P+ N+  WN++I     N    + L L    
Sbjct: 106 SVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSET 165

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             + ++P+  +  SV+  C+ L   ++ K +H  V       D      LI MYC+  DL
Sbjct: 166 QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDL 225

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           + A K+F E+  +DVV+WN++ISGY  +G   +AL ++ + ++ G+ PDS T  ++L AC
Sbjct: 226 DKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRAC 285

Query: 310 NHAGLVDLG 318
              G V+ G
Sbjct: 286 GGLGSVEEG 294


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/548 (40%), Positives = 323/548 (58%), Gaps = 13/548 (2%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DV   N +LS +     DV AA   F R+ ++D  SWNTM+SGFV+      A ++F 
Sbjct: 156 EEDVYVGNSILS-MYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFG 214

Query: 95  AMPEKNSVS-WSAMISGYIECG-----QLDKAVELFKV-----APVKSVVAWTAMISGYM 143
            M     V   + +++    CG     ++ K +  + V       V +     ++I  Y 
Sbjct: 215 DMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYC 274

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
               V  A KLF+ +  K++V+WN++I+GY +   A   L+L   M+ +G  P+  ++ S
Sbjct: 275 NCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVIS 334

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL  C+ +S+L+LG  V   V K     +    T LI MY  CG L  AC++F E+  K+
Sbjct: 335 VLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKN 394

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           +     M++G+  HG+G +A+ +F +M  +G+ PD   F A+L AC+H+GLVD G + F 
Sbjct: 395 LPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFY 454

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            M  DY +  +P HY+C+VDLLGRAG L EA  +I+ M  KP   ++  LLSACR+H+ +
Sbjct: 455 KMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNV 514

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
            LA  +A  LF LNP   +G YV L+NIYAA ++W+DV  +R  + +  + K P YS++E
Sbjct: 515 KLAVISAQKLFELNPDGVSG-YVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVE 573

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +  +VH+F  GD  H +   I+ KLK+L +++K AGY PD    L+ V EE+KE++L  H
Sbjct: 574 LNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDH 633

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SE+LA+AF LI    GT IR+ KNLRVCGDCH   K IS +  REII+RD  RFHHF+DG
Sbjct: 634 SERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDG 693

Query: 564 TCSCGDYW 571
            CSCG YW
Sbjct: 694 LCSCGGYW 701



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 13/332 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
           F ++ +K++  WN+MI G+    + ++A  L+L M      P+  +  +     G +   
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140

Query: 116 QLDKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           ++ + V    V     + V    +++S Y KFG V+ A  +FD M  ++L +WN M++G+
Sbjct: 141 EMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK---SPLC 230
           V+N  A    ++   M   G   + ++L ++L  C  +  L++GK++H  V +   S   
Sbjct: 201 VKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRV 260

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            +   +  +I MYC C  +  A KLF  ++ KDVV+WN++ISGY + G   +AL LF +M
Sbjct: 261 CNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRM 320

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
              G  PD +T +++L ACN    + LG     S V   G        T ++ +    G 
Sbjct: 321 VVVGAVPDEVTVISVLAACNQISALRLGAT-VQSYVVKRGYVVNVVVGTALIGMYANCGS 379

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           LV A  +  +MP K  PA    +++   +H R
Sbjct: 380 LVCACRVFDEMPEKNLPAC-TVMVTGFGIHGR 410



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 93/174 (53%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T + + Y   G +  A+ +FD++  KN   WN+MI GY  N+     L L   M+  G +
Sbjct: 62  TKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQK 121

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   VL  C  L   ++G++VH LV    L +D      ++SMY K GD+E A  +
Sbjct: 122 PDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVV 181

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           F  +  +D+ +WN M+SG+ ++G+   A  +F  M+ +G   D  T +ALL AC
Sbjct: 182 FDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 155/352 (44%), Gaps = 54/352 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV--VAA 58
           M V+   +WN++++GF K  G+ + A E+F  + +   V     L  +L    DV  +  
Sbjct: 185 MLVRDLTSWNTMMSGFVKN-GEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKV 243

Query: 59  FDFFQRLPIKDTAS--------WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                   +++  S         N++I  +   ++++ AR LF  +  K+ VSW+++ISG
Sbjct: 244 GKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISG 303

Query: 111 YIECGQLDKAVELF---------------------------------------KVAPVKS 131
           Y +CG   +A+ELF                                       K   V +
Sbjct: 304 YEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVN 363

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VV  TA+I  Y   G +  A ++FDEMP KNL     M+ G+  +    + + +   M+G
Sbjct: 364 VVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLG 423

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            G+ P+    ++VL  CSH   +  GK++ +++     +    T  + L+ +  + G L+
Sbjct: 424 KGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLD 483

Query: 251 DACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +A  +   ++ K +   W A++S    H   + A+    K+ +  + PD ++
Sbjct: 484 EAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFE--LNPDGVS 533



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 183 LKLLRMMIGLGIRPNASSL------SSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTA 235
           + LL+    L  +P+++S        ++L   ++  SL    Q+H  +     L ++T  
Sbjct: 1   MSLLKTTATLIPKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYL 60

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            T L + Y  CG +  A  +F +I  K+   WN+MI GYA +    +AL L+ KM   G 
Sbjct: 61  ATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQ 120

Query: 296 KPDSITFVALLLACNHAGLVDLG 318
           KPD+ T+  +L AC    L ++G
Sbjct: 121 KPDNFTYPFVLKACGDLLLREMG 143


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 340/601 (56%), Gaps = 78/601 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G+L+DA+++FD     DVVSY                            
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYT--------------------------- 159

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---- 125
                 +I+G+V +  +  A+ LF  +P K+ VSW+AMISGY+E G   +A+ELFK    
Sbjct: 160 -----ALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMM 214

Query: 126 ---VAPVKS--------------------VVAW-------------TAMISGYMKFGKVD 149
              V P +S                    V +W              A+I  Y KFG+V+
Sbjct: 215 MTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVE 274

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A +LFD +  K++++WN +I GY   +  ++ L L + M+  G  PN  ++ S+L  C+
Sbjct: 275 TACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 334

Query: 210 HLSSLQLGKQVHQLV---FKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVV 265
           HL ++ +G+ +H  +    K  +   ++  T LI MY KCGD++ A ++F   +  + + 
Sbjct: 335 HLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLS 394

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           TWNAMISG+A HG+   A  +F +M+  G++PD ITFV LL AC+H+G++DLG   F SM
Sbjct: 395 TWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 454

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
              Y I  K +HY CM+DLLG +G   EA ++I  MP +P   I+ +LL AC++H  L+L
Sbjct: 455 TRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLEL 514

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK-MPGYSWIEV 444
            E  A  L  + P N+ G YV L+NIYAA  +W++VA+IR  + +  + K +PG S IE+
Sbjct: 515 GESFAKKLIKIEPGNS-GSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEI 573

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
            +VVHEF  GD++HP+   I+  L+E+E  ++ AG+VPD    L  + EE +E  L  HS
Sbjct: 574 DSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHS 633

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLAIAFGLI    GT + + KNLRVC +CH ATK IS I KREII RD TRF HF+DG 
Sbjct: 634 EKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGV 693

Query: 565 C 565
           C
Sbjct: 694 C 694



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 201/438 (45%), Gaps = 92/438 (21%)

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW----- 104
           ++ FD  Q     +   WNTM  G     +   A  L+L M      P+  +  +     
Sbjct: 43  ISVFDTIQE---PNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSC 99

Query: 105 ----------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                                       +++IS Y + G+L+ A ++F ++  + VV++T
Sbjct: 100 AKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYT 159

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGLGIR 195
           A+I+GY+  G ++ A+KLFDE+P K++V+WNAMI+GYVE    ++ L+L + MM+   +R
Sbjct: 160 ALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVR 219

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+ S++ +V+  C+   S++LG+ VH  +       +   +  LI +Y K G++E AC+L
Sbjct: 220 PDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACEL 279

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  KDV++WN +I GY      ++AL LF +M   G  P+ +T +++L AC H G +
Sbjct: 280 FDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 316 DLG--------------------------------------IQYFDSMVNDYGIAAKPDH 337
           D+G                                       Q FDS +++  ++     
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLST---- 395

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE--FAAMN 392
           +  M+      G+   A D+  +M     +P    F  LLSAC     LDL    F +M 
Sbjct: 396 WNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMT 455

Query: 393 L-FNLNPA-NAAGCYVQL 408
             + + P     GC + L
Sbjct: 456 RGYEITPKLEHYGCMIDL 473



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 33/245 (13%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F     A  +FD +   NL+ WN M  G+  +S     LKL  +MI LG+ P++ +   +
Sbjct: 36  FDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFL 95

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------------- 251
           L  C+     + G+Q+H  V K     D    T LISMY + G LED             
Sbjct: 96  LKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDV 155

Query: 252 ------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF-DKMKD 292
                             A KLF EI  KDVV+WNAMISGY + G  ++AL LF + M  
Sbjct: 156 VSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMM 215

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             ++PD  T V ++ AC  +  ++LG ++  S +ND+G A+       ++DL  + G++ 
Sbjct: 216 TNVRPDESTMVTVVSACAQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVE 274

Query: 353 EAVDL 357
            A +L
Sbjct: 275 TACEL 279


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/531 (41%), Positives = 311/531 (58%), Gaps = 39/531 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           N +I+ +V+   +  A  LF  MP++N +SW+ MIS Y +C    KA+EL          
Sbjct: 52  NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVR 111

Query: 125 ---------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
                                      K      V   +A+I  + K G+ + A  +FDE
Sbjct: 112 PNVYTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDE 171

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M T + + WN++I G+ +NS ++  L+L + M   G     ++L+SVL  C+ L+ L+LG
Sbjct: 172 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            Q H  + K    +D      L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ+
Sbjct: 232 MQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQN 289

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  ++AL+LF+ MK  G KP+ IT V +L AC+HAGL++ G  YF SM   YGI    +H
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREH 349

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CM+DLLG+AGKL +AV L+ +M  +P    + TLL ACRV + + LAE+AA  +  L+
Sbjct: 350 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 409

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P +A G Y  L+NIYA  +KWD V  IR  M++  + K PG SWIEV   +H F  GD  
Sbjct: 410 PEDA-GTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDES 468

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP++V +++KL +L  R+   GYVP+  F L  +  E  E  L  HSEKLA+AFGL+ +P
Sbjct: 469 HPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLP 528

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
               IR+ KNLR+CGDCH   K  S +E R I++RD  R+HHF+DG CSCG
Sbjct: 529 SEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 52/285 (18%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +++ V   S L     + G+ +DA  +FD++   D + +N ++     NS   V A + F
Sbjct: 142 LESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELF 200

Query: 63  QRLP----IKDTASWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           +R+     I + A+  +++          +     + +   +++ +  +A++  Y +CG 
Sbjct: 201 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGS 260

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           L+ A  +F     + V+ W+ MISG                                 +N
Sbjct: 261 LEDARRVFNQMKERDVITWSTMISG-------------------------------LAQN 289

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
            ++++ LKL  +M   G +PN  ++  VL  CSH   L+ G       F+S   K    +
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDG----WYYFRSM--KKLYGI 343

Query: 237 TP-------LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISG 273
            P       +I +  K G L+DA KL  E++   D VTW  ++  
Sbjct: 344 NPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 388


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/614 (37%), Positives = 337/614 (54%), Gaps = 47/614 (7%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           N K T++WNSV+   +        A +LFD++PQ + +S+  ++    L++  V  A  F
Sbjct: 117 NTKDTISWNSVIKA-SIICNDFVTAVKLFDEMPQRNSISWTTIIHG-FLSTGRVNEAERF 174

Query: 62  FQRLPI--KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           F  +P   KD A+WN M++G+     +  A  LF  MP ++ +SW+++I G    G+  +
Sbjct: 175 FNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQ 234

Query: 120 AVELFK--VAPVKSVVAWTAMISGY-------------------MKFG------------ 146
           A+  FK  V      ++ T ++ G                     KFG            
Sbjct: 235 ALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSAS 294

Query: 147 ---------KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
                    ++  A K+F E   KN+V W A++ G   N    + L++   M+   + PN
Sbjct: 295 LVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPN 354

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            SS +S L  C  L  L+ G+ +H    K  L         L+ MY KCG + DA  +F 
Sbjct: 355 ESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFK 414

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I  K+VV+WN++I G AQHG G  AL LF +M  EG++ D IT   LL AC+ +G++  
Sbjct: 415 GICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQK 474

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
              +F        +    +HY CMVD+LGR G++ EA  L   MP +    ++  LLSAC
Sbjct: 475 ARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSAC 534

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           RVH  LD+AE AA  +F + P + +  YV L+N+YA+ ++W +VARIR+ MK N +VK P
Sbjct: 535 RVHSSLDVAERAAKRIFEMEP-DCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQP 593

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G SWI +  + HEF S DR HP    I+EKL  L  +++  GY+PD +FALH V  E  E
Sbjct: 594 GSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNE 653

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           ++L +HSE+LAIAFGL+    G+ I + KNLRVCGDCH A   ++ I  REI+VRD++RF
Sbjct: 654 EMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRF 713

Query: 558 HHFKDGTCSCGDYW 571
           HHFK+G CSCGDYW
Sbjct: 714 HHFKNGICSCGDYW 727



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 164/303 (54%), Gaps = 10/303 (3%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISG 79
           KL  A+ +F+KIP P V  Y  +L     N +++  A + F ++P   KDT SWN++I  
Sbjct: 72  KLDSARAVFNKIPSPHVSLYTKLLLAYAHN-NNLHEAINLFNQIPSNTKDTISWNSVIKA 130

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTA 137
            +   +   A  LF  MP++NS+SW+ +I G++  G++++A   F   P   K V  W A
Sbjct: 131 SIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNA 190

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRP 196
           M++GY   G+V+ A +LF +MP++++++W ++I G   N  +   L   + M+G  G+  
Sbjct: 191 MVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGI 250

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC--KDTTALTPLISMYCKCGDLEDACK 254
           ++++L   L   + +     G Q+H  +FK   C   D      L++ Y  C  + DACK
Sbjct: 251 SSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACK 310

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E   K+VV W A+++G   + K  +AL +F +M    + P+  +F + L +C   GL
Sbjct: 311 VFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSC--VGL 368

Query: 315 VDL 317
            DL
Sbjct: 369 EDL 371



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 143/315 (45%), Gaps = 19/315 (6%)

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
           P+ +S S +     +++  +LD A  +F   P   V  +T ++  Y     +  A  LF+
Sbjct: 53  PKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFN 112

Query: 157 EMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           ++P  TK+ ++WN++I   +  +     +KL   M      P  +S+S   +    LS+ 
Sbjct: 113 QIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEM------PQRNSISWTTIIHGFLSTG 166

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           ++ +          + KD      +++ YC  G + DA +LF ++  +DV++W ++I G 
Sbjct: 167 RVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGL 226

Query: 275 AQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDL--GIQYFDSMVNDYGI 331
            ++GK  +AL  F  M    G+   S T V  L A   A ++D   GIQ    M   +G 
Sbjct: 227 DRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAA--AKILDFYAGIQIHCCMF-KFGF 283

Query: 332 AAKPDHYT--CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH-KRLDLAE- 387
               D +    +V       ++ +A  +  +   K    ++  LL+ C ++ K ++  E 
Sbjct: 284 CCGLDEFVSASLVTFYASCKRMGDACKVFGETVCK-NVVVWTALLTGCGLNDKHVEALEV 342

Query: 388 FAAMNLFNLNPANAA 402
           F+ M  FN+ P  ++
Sbjct: 343 FSEMMRFNVVPNESS 357


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/522 (41%), Positives = 307/522 (58%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F R+P +D  +W+TM++GFV       A  ++  M E        ++ G I+    
Sbjct: 162 AVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            + V         L +      VV  T+++  Y K G +D+A ++F  M  +N V+W+AM
Sbjct: 222 ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM 281

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+G+ +N  +++ L+L R M   GI+P++ +L S LL CS++  L+LG+ VH  + +   
Sbjct: 282 ISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-F 340

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             +    T  I MY KCG L  A  LF  I  +D++ WNAMI+    HG+G+ AL LF +
Sbjct: 341 DFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQE 400

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M + GM+PD  TF +LL A +H+GLV+ G  +F  MVN + I     HY C+VDLL R+G
Sbjct: 401 MNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSG 460

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            + EA DL+  M  +P  AI+  LLS C  +K+L+L E  A N+  L P +  G    ++
Sbjct: 461 LVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDV-GVLALVS 519

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YAA KKWD V ++R  MK++   KMPG S IE+    H F   D+ HP+   I  K+ 
Sbjct: 520 NLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVA 579

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L+  M+  GY+P  EF  H + EEVKEQ L +HSEKLAIAFGL+    GT + + KNLR
Sbjct: 580 KLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLR 639

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A KYIS I  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 640 VCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP++++ +  L  C+ L  L+ G+ V    F +    D    + L+ +Y + G + DA K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  + R+D VTW+ M++G+   G+   A++++ +M+++G+K D +  + ++ AC  A  
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           V +G      ++  +G+       T +VD+  + G L
Sbjct: 225 VRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLL 260


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/558 (40%), Positives = 314/558 (56%), Gaps = 42/558 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           ++ A  LFD+IPQPD+V +                                NTM  G+ +
Sbjct: 71  MQHAHHLFDQIPQPDIVLF--------------------------------NTMARGYAR 98

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVA 134
                +A  LF  +       +  ++ +++     C  L++  +L     K+   ++V  
Sbjct: 99  TDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYV 158

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
              +I+ Y    ++D A ++FD++    +VT+NAMI GY   S   + L L R +    +
Sbjct: 159 CPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNL 218

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P   ++ SVL  C+ L +L LGK +H+ V K+   +     T LI MY KCG L+DA  
Sbjct: 219 KPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVC 278

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  +  +D   W+AMI  YA HG G KA+ LF +M+  G +PD ITF+ LL AC+H GL
Sbjct: 279 VFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGL 338

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G +YF  M + YG+     HY CMVDLLGRAG+L EA + I  +P +P P ++ TLL
Sbjct: 339 VEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLL 398

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SAC  H  ++L +     +F L+ ++  G Y+ L+N+ A   +W+DV  +R  M E  VV
Sbjct: 399 SACGSHGNVELGKRVIEQIFELDDSH-GGDYIILSNLCARAGRWEDVNYVRKLMNERGVV 457

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGE 493
           K+PG S +EV  VVHEF SGD VH     +H+ L EL K +KL GYVP+     HA + +
Sbjct: 458 KIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMED 517

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE  L +HSEKLAI FGL+  P GT IRV KNLRVCGDCH A K IS I  R+II+RD
Sbjct: 518 EEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRD 577

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHFKDG CSC DYW
Sbjct: 578 VQRFHHFKDGKCSCEDYW 595



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 47/244 (19%)

Query: 196 PNASSLS----SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI---SMYCKCGD 248
           PN++S +    S+L  C+ L  L   KQ+     K+ L  D + LT  I   S+      
Sbjct: 14  PNSNSNTTHPLSLLPKCTSLREL---KQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTS 70

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ A  LF +I + D+V +N M  GYA+     +A  LF ++   G+ PD  TF +LL A
Sbjct: 71  MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130

Query: 309 CNHAGLVDLGIQYF---------------DSMVNDYGIAAKPD---------------HY 338
           C     ++ G Q                  +++N Y    + D                Y
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLA----EFAAM 391
             M+    R  +  EA+ L +++     KP      ++LS+C +   LDL     E+   
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250

Query: 392 NLFN 395
           N FN
Sbjct: 251 NGFN 254


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/517 (40%), Positives = 310/517 (59%), Gaps = 13/517 (2%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEK----NSVSWSAMISGYIEC 114
           L  KD  SW +MI+G+VQ +   +A + F  M      P+     +++S  A I    + 
Sbjct: 406 LEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQG 465

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
            Q+   V +   +   S+  W A+++ Y + G+   A  LF+ +  K+ +TWN M++G+ 
Sbjct: 466 QQIHSRVYVSGYSADVSI--WNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFA 523

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           ++   E+ L++   M   G++ N  +  S +   ++L+ ++ GKQ+H  V K+    +T 
Sbjct: 524 QSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETE 583

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               LIS+Y KCG +EDA   F E+  ++ V+WN +I+  +QHG G +AL LFD+MK EG
Sbjct: 584 VANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEG 643

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +KP+ +TF+ +L AC+H GLV+ G+ YF SM +++GI  +PDHY C+VD+LGRAG+L  A
Sbjct: 644 LKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRA 703

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
              +++MP      ++ TLLSACRVHK +++ E AA  L  L P ++A  YV L+N YA 
Sbjct: 704 RKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSAS-YVLLSNAYAV 762

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
             KW     +R  MK+  V K PG SWIEV  VVH F  GDR+HP    I++ L +L+ R
Sbjct: 763 TGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDR 822

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           +   GY+    F  H   +E K+     HSEKLA+AFGL+ +P   P+RV KNLRVC DC
Sbjct: 823 LAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDC 882

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H   K+ S +  REI++RD  RFHHF +G CSCGD+W
Sbjct: 883 HTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 183/357 (51%), Gaps = 18/357 (5%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           +V A + F+     +   WN M+  + Q  ++AK+ DLF  M       N  ++  ++  
Sbjct: 295 IVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRT 354

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISG-----YMKFGKVDLAEKLFDEMPTKNLVT 165
               G+++   E   +  +K+       +SG     Y K+G +D A ++ + +  K++V+
Sbjct: 355 CTYAGEINLG-EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS 413

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W +MIAGYV++ + ++ L+  + M   GI P+   L+S +  C+ + +++ G+Q+H  V+
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVY 473

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
            S    D +    L+++Y +CG  ++A  LF  I+ KD +TWN M+SG+AQ G  E+AL 
Sbjct: 474 VSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALE 533

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F KM   G+K +  TFV+ + A  +   +  G Q   +++   G  ++ +    ++ L 
Sbjct: 534 VFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLY 592

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH----KRLDLAEFAAMNLFNLNP 398
           G+ G + +A     +M  +   + + T++++C  H    + LDL  F  M    L P
Sbjct: 593 GKCGSIEDAKMQFFEMSERNHVS-WNTIITSCSQHGWGLEALDL--FDQMKQEGLKP 646



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 195/417 (46%), Gaps = 57/417 (13%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV------ 121
           +D  + N +I  + +K  + +AR +F  +  +++VSW AM+SGY   G  ++AV      
Sbjct: 75  EDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM 134

Query: 122 ---------------------------------ELFKVAPVKSVVAWTAMISGYMKFGKV 148
                                            +++K       V   A+I+ Y++FG +
Sbjct: 135 HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSL 194

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
            LAE++F EMP  + VT+N +I+ + +    E  L++   M   G  P+  +++S+L  C
Sbjct: 195 SLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAAC 254

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + +  L  GKQ+H  + K+ +  D      L+ +Y KCG + +A ++F    R +VV WN
Sbjct: 255 ASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWN 314

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVN 327
            M+  Y Q     K+  LF +M   G++P+  T+  LL  C +AG ++LG Q +  S+  
Sbjct: 315 LMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT 374

Query: 328 DYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK--RL 383
            +    + D Y    ++D+  + G L +A  +++ +  K   + + ++++    H+  + 
Sbjct: 375 GF----ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS-WTSMIAGYVQHEFCKE 429

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
            L  F  M LF + P N          + +A+     +  +R   + ++ V + GYS
Sbjct: 430 ALETFKDMQLFGIWPDNIG--------LASAISACAGIKAMRQGQQIHSRVYVSGYS 478



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 192/436 (44%), Gaps = 65/436 (14%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           +  AS N  ++GF+  ++  K   LF A   +     SV ++  +    EC    K   L
Sbjct: 4   RAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALR---ECRGSVKHWPL 60

Query: 124 FKVAPVKSV--------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
             V   K++        +A   +I  Y K G V  A ++F+++  ++ V+W AM++GY  
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           N   E+ + L   M   G+ P    LSSVL  C+  +  + G+ VH  V+K   C +T  
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              LI++Y + G L  A ++F E+   D VT+N +IS +AQ G GE AL +F++M+  G 
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT--CMVDLLGRAGKLVE 353
            PD +T  +LL AC   G ++ G Q    ++        PD+     ++DL  + G +VE
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLK---AGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 354 AVDLIKK----------------------------------MPFKPQPAIFGTLLSACRV 379
           A+++ K                                      +P    +  LL  C  
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMP 437
              ++L E   ++L ++     +  YV   L ++Y+     D   RI   ++  +VV   
Sbjct: 358 AGEINLGE--QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVV--- 412

Query: 438 GYSWIEV--GTVVHEF 451
             SW  +  G V HEF
Sbjct: 413 --SWTSMIAGYVQHEF 426



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 145/360 (40%), Gaps = 64/360 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--- 57
           +  K  V+W S++AG+  Q    K+A E F  +    +   NI L+  +     + A   
Sbjct: 406 LEAKDVVSWTSMIAGYV-QHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQ 464

Query: 58  AFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 R+ +     D + WN +++ + +     +A  LF A+  K+ ++W+ M+SG+ +
Sbjct: 465 GQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQ 524

Query: 114 CGQLDKAVELF---------------------------------------KVAPVKSVVA 134
            G  ++A+E+F                                       K         
Sbjct: 525 SGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEV 584

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+IS Y K G ++ A+  F EM  +N V+WN +I    ++ W  + L L   M   G+
Sbjct: 585 ANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGL 644

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-----LISMYCKCGDL 249
           +PN  +   VL  CSH+  ++ G       FKS   +      P     ++ +  + G L
Sbjct: 645 KPNDVTFIGVLAACSHVGLVEEGLG----YFKSMSSEHGIHPRPDHYACVVDILGRAGQL 700

Query: 250 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKALRLFDKMKDEGMKPDSITFVAL 305
           + A K   E+    + + W  ++S    H     GE A +   +++      DS ++V L
Sbjct: 701 DRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPH----DSASYVLL 756


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/469 (44%), Positives = 294/469 (62%), Gaps = 3/469 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-L 163
           +++I+ Y   G    A  LF        V+W ++I GY+K G++D+A  LF +MP KN  
Sbjct: 149 NSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNA 208

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           ++W  MI+GYV+    ++ L+L   M    + P+  SL+S L  CS L +L+ GK +H  
Sbjct: 209 ISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSY 268

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
             K+    D+     LI MY KCG++E+A  +F  ++ K V  W A+ISGYA HG G +A
Sbjct: 269 ANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREA 328

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           +  F +M++ G+KP++ITF A+L AC++ GLV+ G   F+++  DY +    +HY CMVD
Sbjct: 329 ISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVD 388

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAG L EA   I+KMP KP   I+G+LL AC++HK ++L E     L  ++ +N  G
Sbjct: 389 LLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMD-SNHGG 447

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            YV +ANI+A  KKWD  A  R  M+E  VVK+PG S I +    HEF +GDR H E+  
Sbjct: 448 RYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQE 507

Query: 464 IHEKLKELEKRMKLAGYVPDLE-FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
           I  K + + ++++  GYVP+LE   L  V +E KE ++  HSEKLAI +GL+K   GT I
Sbjct: 508 IRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTI 567

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+ KNLRVC DCH+    IS I KR+I++RD TRFHHFKDG CSCGDYW
Sbjct: 568 RIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 148/319 (46%), Gaps = 46/319 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  +A   G  K A  LFD+I +PD VS+N ++    + + ++  A   F+++P K+
Sbjct: 149 NSLINSYAVT-GNFKHAHLLFDRIQEPDAVSWNSVIKG-YVKAGEMDMALTLFRKMPEKN 206

Query: 70  TA-SWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELF 124
            A SW TMISG+VQ     +A  LF  M   N    +VS ++ +S   + G L++   + 
Sbjct: 207 NAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIH 266

Query: 125 KVAP-----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
             A      + SV+    +I  Y K G+++ A  +F  M TK++  W A+I+GY  +   
Sbjct: 267 SYANKTRTRIDSVLC-CVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLG 325

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + +     M  +G++PNA + ++VL  CS+   ++ GK V   + +         L P 
Sbjct: 326 REAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERD------YNLKPT 379

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I  Y                          M+    + G   +A R   KM    +KP++
Sbjct: 380 IEHY------------------------GCMVDLLGRAGLLNEANRFIQKMP---LKPNA 412

Query: 300 ITFVALLLACNHAGLVDLG 318
           + + +LL AC     ++LG
Sbjct: 413 VIWGSLLKACQIHKNIELG 431



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 121/281 (43%), Gaps = 40/281 (14%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            F+     +   WN MI G   +   +  L L   M+      NA +   +L  CS+LS+
Sbjct: 66  FFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSA 125

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA---- 269
            Q   Q+H  + K     D  A+  LI+ Y   G+ + A  LF  IQ  D V+WN+    
Sbjct: 126 FQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKG 185

Query: 270 ----------------------------MISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
                                       MISGY Q G  ++AL+LF +M++  + PD+++
Sbjct: 186 YVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVS 245

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIK 359
             + L AC+  G ++ G ++  S  N      + D   C  ++D+  + G++ EA+ + K
Sbjct: 246 LASALSACSQLGALEQG-KWIHSYANK--TRTRIDSVLCCVLIDMYAKCGEMEEALGVFK 302

Query: 360 KMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
            M  K    ++  L+S    H   R  +++F  M    + P
Sbjct: 303 NMKTK-SVQVWTALISGYAYHGLGREAISKFLEMQNMGVKP 342



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 31/190 (16%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE-IQRKDVVTWNAMISGYAQ 276
           KQ+H  + KS L +D  A+T  +S          A  +F     R D   WN MI G + 
Sbjct: 28  KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQY 321
             + +++L L+ +M       ++ TF  LL AC+           HA +   G    I  
Sbjct: 88  SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYA 147

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLG---------------RAGKLVEAVDLIKKMPFKPQ 366
            +S++N Y +     H   + D +                +AG++  A+ L +KMP K  
Sbjct: 148 VNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNN 207

Query: 367 PAIFGTLLSA 376
              + T++S 
Sbjct: 208 AISWTTMISG 217


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 328/572 (57%), Gaps = 58/572 (10%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +  WN V+  + K R + ++A  ++ ++ + D    N M   +L     V          
Sbjct: 124 SAQWNFVITSYTK-RNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQV---------- 172

Query: 66  PIKDTASWNTM---ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                 SW  +   I GFV KK +   RD+F+          +A++  Y EC  ++ A  
Sbjct: 173 ------SWTQLGKEIHGFVLKKGLD--RDVFVG---------NALMLMYGECACVEYARL 215

Query: 123 LFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +F     + VV+W    TA++  Y K G + LA +LF+ +  K +V+W AMIAG + ++ 
Sbjct: 216 VFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 275

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+G KL   M    I PN  ++              L K+  ++        D    T 
Sbjct: 276 LEEGTKLFIRMQEENIFPNEITM--------------LNKERVEV--------DCILNTA 313

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY KCGD+  A +LF+E   +D+  WNA+I+G+A HG GE+AL +F +M+ +G+KP+
Sbjct: 314 LVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPN 373

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            ITF+ LL AC+HAGLV  G + F+ MV+ +G+  + +HY CMVDLLGRAG L EA ++I
Sbjct: 374 DITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMI 433

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           K MP KP   ++G L++ACR+HK   L E AA  L  + P N  G  V ++NIYAA  +W
Sbjct: 434 KSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENC-GYNVLMSNIYAAANRW 492

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            D A +R +MK   + K PG+S IEV   VHEF  GD+ HP++  I+E L E+ +++  A
Sbjct: 493 SDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEA 552

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GYVPD    L  + EE KE  L +HSEKLA+AFGLI     TPIR+ KNLRVC DCH AT
Sbjct: 553 GYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAAT 612

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
           K +S I  R IIVRD  RFHHF++G CSCGDY
Sbjct: 613 KLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 350/613 (57%), Gaps = 50/613 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCILLNSDDV----VA 57
           T++WNS+L+GF  Q G   +A     E+ D   +PD+V+   +++    + + +    + 
Sbjct: 384 TISWNSMLSGFV-QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIH 442

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A+     L   D    N+++  + +  +M     +F  MP+K+ VSW+ +I+G+ + G  
Sbjct: 443 AYAMKNGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 501

Query: 118 DKAVELFK--------------------------VAPVKSVVAW------------TAMI 139
            +A+ELF+                          ++ VK + ++              ++
Sbjct: 502 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIV 561

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y + G VD A ++F+ +  K++V+W +MI+ YV N  A + L+L  +M   G+ P++ 
Sbjct: 562 DVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSI 621

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           SL S+L   + LS+L+ GK++H  + +     + +  + L+ MY +CG LE +  +F  I
Sbjct: 622 SLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFI 681

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           + KD+V W +MI+ Y  HG G  A+ LF +M+DE + PD I FVA+L AC+H+GL++ G 
Sbjct: 682 RNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 741

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++ +SM  +Y +   P+HY C+VDLLGRA  L EA   +K M  +P   ++  LL AC++
Sbjct: 742 RFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQI 801

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H   +L E AA  L  ++P N  G YV ++N+YAA ++W DV  +R+ MK + + K PG 
Sbjct: 802 HSNKELGEIAAQKLLEMDPEN-PGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGC 860

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL-EKRMKLAGYVPDLEFALHAVGEEVKEQ 498
           SWIEVG  VH F + D+ HP+   I+ KL ++ EK  K  GYV   +F LH   EE K Q
Sbjct: 861 SWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQ 920

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
           +L  HSE+LAIA+G++  P G  +R+ KNLRVCGDCH   K IS   +RE+++RD  RFH
Sbjct: 921 MLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFH 980

Query: 559 HFKDGTCSCGDYW 571
           HFK G CSCGD W
Sbjct: 981 HFKGGVCSCGDVW 993



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           GQ   A  +   A   SV   T ++  Y K G +  AEKLFD MP K + TWNAMI  YV
Sbjct: 133 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 192

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            N      L+L R M   GI  +A +   +L  C  L   + G +VH L  K        
Sbjct: 193 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVF 252

Query: 235 ALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
               ++ MY KC DL  A +LF  + +++DVV+WN+MIS Y+ +G+  +ALRLF +M+  
Sbjct: 253 VANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKA 312

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGR 347
            + P++ TFVA L AC  +  +  G+    +++       K  +Y        ++ +  R
Sbjct: 313 SLAPNTYTFVAALQACEDSSFIKQGMFIHATVL-------KSSYYINVFVANALIAMYAR 365

Query: 348 AGKLVEAVDLIKKM 361
            GK+ EA ++   M
Sbjct: 366 FGKMGEAANIFYNM 379



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 202/455 (44%), Gaps = 87/455 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASW--- 73
           G L DA++LFD +P   + ++N M+   + N + +  + + ++ + +     D  ++   
Sbjct: 164 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL-GSLELYREMRVSGIPLDACTFPCI 222

Query: 74  --------------------------------NTMISGFVQKKNMAKARDLFLAMPEKNS 101
                                           N+++  + +  ++  AR LF  MPEK  
Sbjct: 223 LKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 282

Query: 102 V-SWSAMISGYIECGQLDKAVELF------KVAP-------------------------- 128
           V SW++MIS Y   GQ  +A+ LF       +AP                          
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 342

Query: 129 --VKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
             +KS     V    A+I+ Y +FGK+  A  +F  M   + ++WN+M++G+V+N    +
Sbjct: 343 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHE 402

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+    M   G +P+  ++ S++   +   +   G Q+H    K+ L  D      L+ 
Sbjct: 403 ALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVD 462

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K   ++    +F ++  KDVV+W  +I+G+AQ+G   +AL LF +++ EG+  D + 
Sbjct: 463 MYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMM 522

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++LLAC+   L+   ++   S +   G++        +VD+ G  G +  A  + + +
Sbjct: 523 ISSILLACSGLKLIS-SVKEIHSYIIRKGLSDLVLQ-NGIVDVYGECGNVDYAARMFELI 580

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            FK    +  T + +C VH  L      A+ LF+L
Sbjct: 581 EFK--DVVSWTSMISCYVHNGL---ANEALELFHL 610



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           + SSVL  C    +L  G+QVH  ++  + L       T L+ MY KCG L DA KLF  
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  K + TWNAMI  Y  +G+   +L L+ +M+  G+  D+ TF  +L AC        G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 319 IQYFDSMVNDYGIAAKPDHYT------CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
            +        +G+A K  + +       +V +  +   L  A  L  +MP K     + +
Sbjct: 236 AEV-------HGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 288

Query: 373 LLSA 376
           ++SA
Sbjct: 289 MISA 292


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/566 (39%), Positives = 339/566 (59%), Gaps = 23/566 (4%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-------PIKDTASWNT 75
           L  A +LFD+IPQPD+  YN M+    L+      +   F+ L       P + +  +  
Sbjct: 63  LSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAF 122

Query: 76  MISGF---VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
              G    VQ+    +   + + + E N    +A+I  Y + G + ++ ++F+ A  + +
Sbjct: 123 SACGNGLGVQEGEQVRIHAVKVGL-ENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDL 181

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
            +W  +I+ Y+  G + LA++LFD M  +++V+W+ +IAGYV+     + L     M+ +
Sbjct: 182 YSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQI 241

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G +PN  +L S L  CS+L +L  GK +H  + K  +  +   L  +I MY KCG++E A
Sbjct: 242 GPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESA 301

Query: 253 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
            ++F E + ++ V  WNAMI G+A HG   +A+ +F++MK E + P+ +TF+ALL AC+H
Sbjct: 302 SRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSH 361

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
             +V+ G  YF  MV+DY I  + +HY CMVDLL R+G L EA D+I  MP  P  AI+G
Sbjct: 362 GYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWG 421

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL+ACR++K ++        +  ++P N  GC+V L+NIY+   +W++ ARI   ++E 
Sbjct: 422 ALLNACRIYKDMERGYRIGRIIKGMDP-NHIGCHVLLSNIYSTSGRWNE-ARI---LREK 476

Query: 432 NVV-----KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           N +     K+PG S IE+    H+F  GD+ HP+   I+  L E+  ++K AGYVP+L  
Sbjct: 477 NEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGE 536

Query: 487 ALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
            LH +  EE KE  L  HSEKLAIAFGL+    GTPIR+ KNLRVCGDCH+ATK+IS + 
Sbjct: 537 LLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVY 596

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            R IIVRD TR+HHF+DG CSC DYW
Sbjct: 597 NRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 111/273 (40%), Gaps = 56/273 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVV 56
           M  +  V+W++++AG+  Q G   +A + F K+    P+P              N   +V
Sbjct: 207 MRERDVVSWSTIIAGYV-QVGCFMEALDFFHKMLQIGPKP--------------NEYTLV 251

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           +A      L   D   W   I  ++ K  + K  +  LA          ++I  Y +CG+
Sbjct: 252 SALAACSNLVALDQGKW---IHAYIGKGEI-KMNERLLA----------SIIDMYAKCGE 297

Query: 117 LDKAVELFKVAPVKSVV-AWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIA 171
           ++ A  +F    VK  V  W AMI G+   G  + A  +F++M  +    N VT+ A++ 
Sbjct: 298 IESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLN 357

Query: 172 GYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGC--SHLSSLQLGKQVHQLVFKSP 228
                   E+G    R+M+    I P          GC    LS   L K+   ++   P
Sbjct: 358 ACSHGYMVEEGKLYFRLMVSDYAITPEIEH-----YGCMVDLLSRSGLLKEAEDMISSMP 412

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +  D              G L +AC+++ +++R
Sbjct: 413 MAPDVAIW----------GALLNACRIYKDMER 435


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/585 (39%), Positives = 350/585 (59%), Gaps = 25/585 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI 67
           N+V+  +AK  G +++A ++F+++   DVVS+N M++    +   DD +  F+  +   I
Sbjct: 270 NAVVDMYAKC-GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 328

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVE 122
           + +  +W+ +I+G+ Q+    +A D+F  M     E N V+  +++SG    G L    E
Sbjct: 329 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKE 388

Query: 123 -----------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAM 169
                      L +  P   ++   A+I  Y K      A  +FD +P K+  +VTW  +
Sbjct: 389 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 448

Query: 170 IAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           I G  ++  A + L+L   M+     + PNA ++S  L+ C+ L +L+ G+Q+H  V ++
Sbjct: 449 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 508

Query: 228 PLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                   +   LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+GE+AL++
Sbjct: 509 RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQI 568

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+  G+ PD +TFV +L AC+H+G+VD GI YF+ M  D+G+    +HY CMVDLL 
Sbjct: 569 FYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLS 628

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG+L EA++LI+ MP KP PA++  LLSACRV+  ++L E+AA  L  L   N  G Y 
Sbjct: 629 RAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGND-GSYT 687

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+NIYA  + W DVARIR  MK   + K PG SW++       F +GD  HP    I++
Sbjct: 688 LLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYD 747

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            L++L +R+K  GYVPD  FALH V +E K  LL  HSEKLA+A+G++    G PIR+ K
Sbjct: 748 LLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITK 807

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR CGDCH A  YIS I + EIIVRD++RFHHFK+G+CSC  YW
Sbjct: 808 NLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 126/218 (57%), Gaps = 5/218 (2%)

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNA 168
             CG    AV +F      +V     ++S Y + G  + A ++FDEM  +   +LV+WN+
Sbjct: 142 FRCGASVHAV-VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 200

Query: 169 MIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           ++A Y++   +   +K+  RM   LGIRP+A SL +VL  C+ + +   GKQVH    +S
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L +D      ++ MY KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G+ + AL LF
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +K+++E ++ + +T+ A++      GL    +  F  M
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 162/379 (42%), Gaps = 56/379 (14%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIE 113
           FD  +   + D  SWN++++ ++Q  +  +A  +F  M E      ++VS   ++     
Sbjct: 184 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G   +  ++     +    + V    A++  Y K G ++ A K+F+ M  K++V+WNAM
Sbjct: 244 VGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAM 303

Query: 170 -----------------------------------IAGYVENSWAEDGLKLLRMMIGLGI 194
                                              IAGY +     + L + R M   G 
Sbjct: 304 VTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGS 363

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCG 247
            PN  +L S+L GC+   +L  GK+ H    K  L         D   +  LI MY KC 
Sbjct: 364 EPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCK 423

Query: 248 DLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFV 303
             + A  +F  I  KD  VVTW  +I G AQHG+  +AL LF +M   D  + P++ T  
Sbjct: 424 SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 483

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
             L+AC   G +  G Q    ++ +   +A      C++D+  ++G  V+A  ++     
Sbjct: 484 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD-VDAARVVFDNMH 542

Query: 364 KPQPAIFGTLLSACRVHKR 382
           +     + +L++   +H R
Sbjct: 543 QRNGVSWTSLMTGYGMHGR 561



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEM-PTKNLVTW-NAMIAGYVENSWAEDGLKLLRMMIGLG 193
           T +IS Y+ F     A  +   + P+ + V W N +I   V   + ED L+L R M  LG
Sbjct: 62  THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 121

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            RP+  +   VL  C  + S + G  VH +VF S    +      L+SMY +CG  E+A 
Sbjct: 122 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 181

Query: 254 KLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLAC 309
           ++F E++ +   D+V+WN++++ Y Q G   +A+++F++M +D G++PD+++ V +L AC
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAK--PDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 364
              G    G Q     V+ Y + +    D +    +VD+  + G + EA  + ++M  K
Sbjct: 242 ASVGAWSRGKQ-----VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 295



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 92/372 (24%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLS------CILLNSDD 54
             V W++V+AG+A QRG   +A ++F ++     +P+VV+   +LS       +L   + 
Sbjct: 331 NVVTWSAVIAGYA-QRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 55  VVAAFDFFQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS--VSWSAMI 108
              A  +   L    P  D    N +I  + + K+   AR +F  +P K+   V+W+ +I
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 109 SGYIECGQLDKAVELFK--------VAPVKSVVAWTAM---------------------- 138
            G  + G+ ++A+ELF         V P    ++   M                      
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 139 ------------ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                       I  Y K G VD A  +FD M  +N V+W +++ GY  +   E+ L++ 
Sbjct: 510 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 569

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M  +G+ P+  +   VL  CSH   +  G     + + + + KD   + P    Y   
Sbjct: 570 YEMQKVGLVPDGVTFVVVLYACSHSGMVDQG-----INYFNGMNKD-FGVVPGAEHY--- 620

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
                AC                M+   ++ G+ ++A+ L   M    MKP    +VALL
Sbjct: 621 -----AC----------------MVDLLSRAGRLDEAMELIRGMP---MKPTPAVWVALL 656

Query: 307 LACNHAGLVDLG 318
            AC     V+LG
Sbjct: 657 SACRVYANVELG 668


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/467 (44%), Positives = 283/467 (60%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S +I  Y E G LD    +F       +V  TAM+S   K G V  A KLFD+M  K+ +
Sbjct: 150 SGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPI 209

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WNAMI+GYV+   + + L L  +M   G++ N  S+ SVL  CSHL +L  G+  H  +
Sbjct: 210 AWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYI 269

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            ++ L    T  T LI MY KCG++  A ++F  ++ K+V TW++ I G A +G GEK L
Sbjct: 270 ERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCL 329

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF  MK + ++P+ ITFV++L  C+  GLV+ G ++F+SM   YGI  + +HY CMVDL
Sbjct: 330 ELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDL 389

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG L EA++ I  MP +P    +G LL+AC++++ +++ E A+  +  L   N  G 
Sbjct: 390 YGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKN-HGA 448

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+NIYA  K WD V+ +R +M    V K PG S IEVG  VHEF  GD+ HP    I
Sbjct: 449 YVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEI 508

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
              L E+ +R+KL+GYV +       + EE KE  L  HSEK+AIAFGLI +    PIR+
Sbjct: 509 QVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRI 568

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH ATK IS    REI+VRD  RFHHF+DG CSC  YW
Sbjct: 569 VKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 144/323 (44%), Gaps = 42/323 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L     +F  I +PD+V    M+S C  +   DV  A   F ++  KD  +WN MISG
Sbjct: 160 GGLDACHRVFSSICEPDLVCQTAMVSACAKMG--DVGFARKLFDKMSHKDPIAWNAMISG 217

Query: 80  FVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA------VELFKVAPV 129
           +VQ     +A  LF  M  +    N VS  +++S     G LD+       +E  K+   
Sbjct: 218 YVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLR-- 275

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            ++   TA+I  Y K G ++ A ++F  M  KN+ TW++ I G   N   E  L+L  +M
Sbjct: 276 MTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLM 335

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISM 242
               ++PN  +  SVL GCS +  ++ G++  + + K         + P       ++ +
Sbjct: 336 KQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK------VYGIEPRLEHYGCMVDL 389

Query: 243 YCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           Y + G L++A      +  R  V  W A+++          A +++  M+   M   +  
Sbjct: 390 YGRAGHLDEALNFINSMPVRPHVGAWGALLN----------ACKIYRNME---MGELASR 436

Query: 302 FVALLLACNHAGLVDLGIQYFDS 324
            +  L A NH   V L   Y DS
Sbjct: 437 KIVELEAKNHGAYVLLSNIYADS 459



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 36/248 (14%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLG-IRPNASSLSSVLLGC 208
           + ++ D      L T+N+MI  + ++S          R++   G + P+  + + ++   
Sbjct: 62  SNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTS 121

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC--------------- 253
           + L +   G  VH    K     D    + LI MY + G L DAC               
Sbjct: 122 AQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGL-DACHRVFSSICEPDLVCQ 180

Query: 254 -----------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
                            KLF ++  KD + WNAMISGY Q G+  +AL LF+ M+ EG+K
Sbjct: 181 TAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVK 240

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            + ++ V++L AC+H G +D G ++  + +    +       T ++D+  + G + +A++
Sbjct: 241 VNEVSMVSVLSACSHLGALDQG-RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAME 299

Query: 357 LIKKMPFK 364
           +   M  K
Sbjct: 300 VFWGMKEK 307



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 20/234 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-----DVVSYNIMLSCILLNS-DD 54
           M+ K  + WN++++G+  Q G+ ++A  LF+ + +      +V   +++ +C  L + D 
Sbjct: 203 MSHKDPIAWNAMISGYV-QCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQ 261

Query: 55  VVAAFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A  + +R  ++ T +  T +I  + +  NM KA ++F  M EKN  +WS+ I G   
Sbjct: 262 GRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAM 321

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKNLV 164
            G  +K +ELF +    SV    + + +++ G    G V+   K F+ M         L 
Sbjct: 322 NGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLE 381

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
            +  M+  Y      ++ L  +  M    +RP+  +  ++L  C    ++++G+
Sbjct: 382 HYGCMVDLYGRAGHLDEALNFINSM---PVRPHVGAWGALLNACKIYRNMEMGE 432


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 330/564 (58%), Gaps = 19/564 (3%)

Query: 23   LKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            L+ A ++F ++P P+ + +N     I+LN  S+ +    + F+++      +    I   
Sbjct: 574  LEKANQVFHEMPNPEALLWN---EAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRV 630

Query: 81   VQKK-------NMAKARDLFLAMPEKNSVSW--SAMISGYIECGQLDKAVELFKVAPVKS 131
            +Q         NM K    ++     +   +  +++I  Y++   L  A  +F     ++
Sbjct: 631  LQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRN 690

Query: 132  VVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLR 187
            + AW +++SGY   G  + A +L ++M  +    +LVTWN MI+GY      ++ L    
Sbjct: 691  IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFA 750

Query: 188  MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
             M   G+ PN++S++ +L  C+ LS LQ GK++H L  ++   +D    T LI MY K  
Sbjct: 751  QMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSS 810

Query: 248  DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
             L++A K+F  IQ K + +WN MI G+A  G G++A+ +F++M+  G+ PD+ITF ALL 
Sbjct: 811  SLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLS 870

Query: 308  ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
            AC ++GL+  G +YFDSM+ DY I  + +HY CMVDLLGRAG L EA DLI  MP KP  
Sbjct: 871  ACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDA 930

Query: 368  AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
             I+G LL +CR+HK L  AE AA NLF L P N+A  Y+ + N+Y+   +W+D+  +R  
Sbjct: 931  TIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSAN-YILMMNLYSIFNRWEDMDHLREL 989

Query: 428  MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
            M    V     +SWI++   VH F S ++ HP+   I+ +L +L   MK  GYVPD+   
Sbjct: 990  MGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCV 1049

Query: 488  LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
               + E  K+++LL H+EKLAI +GLIK+  G PIRV KN R+C DCH A KYIS ++ R
Sbjct: 1050 YQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKAR 1109

Query: 548  EIIVRDTTRFHHFKDGTCSCGDYW 571
            E+ +RD  RFHHF++G CSC D+W
Sbjct: 1110 ELFLRDGVRFHHFREGKCSCNDFW 1133



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 22/347 (6%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           V+ G  +Q   +K       K+PQ   PD  + N ++S  L   D   AA  F+  LP +
Sbjct: 428 VVEGTDEQEHGIKMMHAQMIKLPQKWNPDAAAKN-LISSYLGFGDFWSAAMVFYVGLP-R 485

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK--------NSVSWSAMISGYIECGQLDKA 120
           +   WN+ +  F   K+ A +  + L + ++        +S  +S  +        +   
Sbjct: 486 NYLKWNSFVEEF---KSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLG 542

Query: 121 VE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           +E    L K      V    A+++ Y +   ++ A ++F EMP    + WN  I   +++
Sbjct: 543 MEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQS 602

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTTA 235
              + G++L R M    ++   +++  VL    S L  L +GK+ H  V ++    D   
Sbjct: 603 EKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYV 662

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            T LI MY K   L  A  +F  ++ +++  WN+++SGY+  G  E ALRL ++M+ EG+
Sbjct: 663 GTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGI 722

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           KPD +T+  ++      G     + +F  M  + G+       TC++
Sbjct: 723 KPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLL 768


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 362/627 (57%), Gaps = 62/627 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K +V+WNS++ G   Q G   +A E +  + + D++      S  L++S    A+  
Sbjct: 375 MTDKDSVSWNSMITGL-DQNGCFIEAVERYKSMRRHDILPG----SFTLISSLSSCASLK 429

Query: 61  FFQ----------RLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           + +          +L I  + +  N +++ + +   + + R +F +MPE + VSW+++I 
Sbjct: 430 WAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIG 489

Query: 110 GY----------IEC----------------------------GQLDKAVE--LFKVAPV 129
                       + C                            G+L K +     K    
Sbjct: 490 ALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIA 549

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRM 188
                  A+I+ Y K G++D  EK+F  M  + + VTWN+MI+GY+ N      L L+  
Sbjct: 550 DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWF 609

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G R ++   ++VL   + +++L+ G +VH    ++ L  D    + L+ MY KCG 
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 669

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLL 307
           L+ A + F  +  ++  +WN+MISGYA+HG+GE+AL+LF+ MK +G  P D +TFV +L 
Sbjct: 670 LDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLS 729

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL++ G ++F+SM + YG+A + +H++CM D+LGRAG+L +  D I+KMP KP  
Sbjct: 730 ACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNV 789

Query: 368 AIFGTLLSAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
            I+ T+L AC R + R  +L + AA  LF L P NA   YV L N+YAA  +W+D+ + R
Sbjct: 790 LIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN-YVLLGNMYAAGGRWEDLVKAR 848

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             MK+ +V K  GYSW+ +   VH F +GD+ HP+   I++KLKEL ++M+ AGYVP   
Sbjct: 849 KKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTG 908

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYISAI 544
           FAL+ + +E KE++L +HSEKLA+AF L      T PIR+ KNLRVCGDCH A KYIS I
Sbjct: 909 FALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKI 968

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
           E R+II+RD+ RFHHF+DG CSC D+W
Sbjct: 969 EGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 4/192 (2%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           L+K    K V     +I+ Y++ G    A K+FDEMP +N V+W  +++GY  N   ++ 
Sbjct: 27  LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEA 86

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL--GKQVHQLVFKSPLCKDTTALTPLI 240
           L  LR M+  GI  N  +  SVL  C  + S+ +  G+Q+H L+FK     D      LI
Sbjct: 87  LVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLI 146

Query: 241 SMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           SMY KC G +  A   F +I+ K+ V+WN++IS Y+Q G    A R+F  M+ +G +P  
Sbjct: 147 SMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTE 206

Query: 300 ITFVALL-LACN 310
            TF +L+  AC+
Sbjct: 207 YTFGSLVTTACS 218



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 23/362 (6%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D V  N+++S        V  A   F  + +K++ SWN++IS + Q  +   A  +F +M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197

Query: 97  PEKNS----VSWSAMISGYIECGQLDKAVELF--------KVAPVKSVVAWTAMISGYMK 144
               S     ++ ++++    C   +  V L         K   +  +   + ++S + K
Sbjct: 198 QYDGSRPTEYTFGSLVT--TACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAK 255

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL---LRMMIGLGIRPNASSL 201
            G +  A K+F++M T+N VT N ++ G V   W E+  KL   +  MI +        L
Sbjct: 256 SGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILL 315

Query: 202 SSV-LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEI 259
           SS      +    L+ G++VH  V  + L      +   L++MY KCG + DA ++F  +
Sbjct: 316 SSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFM 375

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             KD V+WN+MI+G  Q+G   +A+  +  M+   + P S T ++ L +C       LG 
Sbjct: 376 TDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ 435

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSA 376
           Q     +   GI         ++ L    G L E   +   MP   Q    +I G L  +
Sbjct: 436 QIHGESLK-LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARS 494

Query: 377 CR 378
            R
Sbjct: 495 ER 496



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 190/438 (43%), Gaps = 59/438 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK----------------------IPQPDV 38
           + VK +V+WNS+++ ++ Q G  + A  +F                        + +PDV
Sbjct: 166 IEVKNSVSWNSIISVYS-QAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDV 224

Query: 39  VSYNIMLSCI--------LLNSDDVVAAF----------DFFQRLPIKDTASWNTMISGF 80
                ++  I        L     +V+AF            F ++  ++  + N ++ G 
Sbjct: 225 RLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGL 284

Query: 81  VQKKNMAKARDLFL---AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           V++K   +A  LF+   +M + +  S+  ++S + E   L + V L K   V   V  T 
Sbjct: 285 VRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEY-SLAEEVGLKKGREVHGHVITTG 343

Query: 138 MI-----------SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
           ++           + Y K G +  A ++F  M  K+ V+WN+MI G  +N    + ++  
Sbjct: 344 LVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERY 403

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           + M    I P + +L S L  C+ L   +LG+Q+H    K  +  + +    L+++Y + 
Sbjct: 404 KSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAET 463

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG-EKALRLFDKMKDEGMKPDSITFVAL 305
           G L +  K+F  +   D V+WN++I   A+  +   +A+  F   +  G K + ITF ++
Sbjct: 464 GYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSV 523

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L A +     +LG Q     + +  IA +      ++   G+ G++     +  +M  + 
Sbjct: 524 LSAVSSLSFGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAERR 582

Query: 366 QPAIFGTLLSACRVHKRL 383
               + +++S   +H  L
Sbjct: 583 DNVTWNSMISG-YIHNEL 599



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 192/485 (39%), Gaps = 106/485 (21%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----- 122
           KD    N +I+ +++  +   AR +F  MP +N VSW+ ++SGY   G+  +A+      
Sbjct: 34  KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93

Query: 123 ------------------------------------LFKVAPVKSVVAWTAMISGYMK-F 145
                                               +FK++     V    +IS Y K  
Sbjct: 94  VKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCI 153

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G V  A   F ++  KN V+WN++I+ Y +        ++   M   G RP   +  S++
Sbjct: 154 GSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLV 213

Query: 206 LGCSHLSS--LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
                L+   ++L +Q+   + KS L  D    + L+S + K G L  A K+F +++ ++
Sbjct: 214 TTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRN 273

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH----------- 311
            VT N ++ G  +   GE+A +LF  M     + P+S  +V LL +              
Sbjct: 274 AVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPES--YVILLSSFPEYSLAEEVGLKK 331

Query: 312 ----------AGLVDLGIQYFDSMVNDY---GIAAKPDH------------YTCMVDLLG 346
                      GLVD  +   + +VN Y   G  A                +  M+  L 
Sbjct: 332 GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLD 391

Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE---FAAMNL---FNLN 397
           + G  +EAV+  K M      P      + LS+C   K   L +     ++ L    N++
Sbjct: 392 QNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVS 451

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
            +NA      L  +YA     ++  +I  SM E++ V     SW    +++      +R 
Sbjct: 452 VSNA------LMTLYAETGYLNECRKIFSSMPEHDQV-----SW---NSIIGALARSERS 497

Query: 458 HPELV 462
            PE V
Sbjct: 498 LPEAV 502



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%)

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  ++K+ L KD      LI+ Y + GD   A K+F E+  ++ V+W  ++SGY+++G+ 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++AL     M  EG+  +   FV++L AC   G V +
Sbjct: 84  KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGI 120


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 330/542 (60%), Gaps = 13/542 (2%)

Query: 42  NIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ LS +L+N+      V  A   F  +  +   SWNTMI  + + +  ++A D+F  M 
Sbjct: 97  DVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMR 156

Query: 98  EKNSVSWSAMISGYIE-CGQLDKAVELFKVAPVK-------SVVAWTAMISGYMKFGKVD 149
            +        IS  +  CG    A+E  K+  +        ++   TA++  Y K G ++
Sbjct: 157 NEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMIN 216

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A ++F+ M  K+ VTW++M+AGYV++   E+ L L R    + +  N  +LSSV+  CS
Sbjct: 217 DAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 276

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
           +L++L  GKQ+H ++ KS    +    +  + MY KCG L ++  +F E+Q K++  WN 
Sbjct: 277 NLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNT 336

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           +ISG+A+H + ++ + LF+KM+ +GM P+ +TF +LL  C H GLV+ G ++F  M   Y
Sbjct: 337 IISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTY 396

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
           G++    HY+CMVD+LGRAG L EA +LIK +PF+P  +I+G+LL++CRV K L+LAE A
Sbjct: 397 GLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVA 456

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A  LF L P N AG +V L+NIYAA K+W+++A+ R  +++ +V K+ G SWI++   VH
Sbjct: 457 AKKLFELEPEN-AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVH 515

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
            FR G+  HP +  I   L  L   ++  GY P +E  LH V    KE+LL+ HSEKLA+
Sbjct: 516 IFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLAL 575

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
            FGL+ +P G+ +R+ KNLR+C DCH   K  S   +R IIVRD  RFHHF DG CSCG+
Sbjct: 576 VFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGE 635

Query: 570 YW 571
           +W
Sbjct: 636 FW 637



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            AS    +L  C+   ++   K  H    +  L  D T    LI+ Y KCG +E A ++F
Sbjct: 62  QASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVF 121

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  + +V+WN MI  Y ++    +AL +F +M++EG K    T  ++L AC  A    
Sbjct: 122 DGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACG-ANCDA 180

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L  +    +     +       T ++DL  + G + +AV + + M  K 
Sbjct: 181 LECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKS 229



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 37/259 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K++V W+S++AG+ + +   ++A  L+ +  +  +      LS ++    ++ A  +
Sbjct: 225 MQDKSSVTWSSMVAGYVQSKN-YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 283

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q   +          SGF          ++F+A         S+ +  Y +CG L ++
Sbjct: 284 GKQMHAVIRK-------SGF--------GSNVFVA---------SSAVDMYAKCGSLRES 319

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVEN 176
             +F     K++  W  +ISG+ K  +      LF++M       N VT++++++     
Sbjct: 320 YIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 379

Query: 177 SWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
              E+G +  ++M    G+ PN    S +  +LG + L S     + ++L+   P     
Sbjct: 380 GLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS-----EAYELIKSIPFEPTA 434

Query: 234 TALTPLISMYCKCGDLEDA 252
           +    L++    C +LE A
Sbjct: 435 SIWGSLLASCRVCKNLELA 453


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 323/577 (55%), Gaps = 45/577 (7%)

Query: 7   VNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           V++N+ L  F  +      +  A+ LFD + +PD+V +N                     
Sbjct: 62  VSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFN--------------------- 100

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE- 122
                      ++  G+ +  N  +  +LF+ + E + +  +      ++   + KA+E 
Sbjct: 101 -----------SIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEE 149

Query: 123 -------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                    K+    +V     +I+ Y +   VD A  +FD +    +V +NAMI GY  
Sbjct: 150 GRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYAR 209

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
            +   + L L R M G  ++PN  +L SVL  C+ L SL LGK +H+   K   CK    
Sbjct: 210 RNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKV 269

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            T LI M+ KCG L+DA  +F  ++ KD   W+AMI  YA HG+ E ++ +F++M+ E +
Sbjct: 270 NTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENV 329

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           +PD ITF+ LL AC+H GLV+ G +YF  MV+++GI     HY  MVDLLGRAG L +A 
Sbjct: 330 QPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAY 389

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
           + I K+P  P P ++  LL+AC  H  L+LAE  +  +  L+ ++  G YV L+N+YA  
Sbjct: 390 EFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSH-GGDYVILSNLYARN 448

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
           KKW+ V  +R  MK+   VK+PG S IEV  VVHEF SGD V      +H  L E+ K +
Sbjct: 449 KKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKEL 508

Query: 476 KLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           KLAGYVPD    +HA +G++ KE  L +HSEKLAIAFGL+  P GT IRV KNLRVC DC
Sbjct: 509 KLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDC 568

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H A K IS I  R++++RD  RFHHF+DG CSC D+W
Sbjct: 569 HSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/537 (40%), Positives = 317/537 (59%), Gaps = 41/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N+++S + +   ++ AR +F  + ++  VSW+++ISGY++ G   +A+ +FK        
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVK 183

Query: 126 ---VAPVKSVVAWT----------------------------AMISGYMKFGKVDLAEKL 154
              +A V  + A+T                            ++ + Y K G V++A   
Sbjct: 184 PDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFF 243

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F+ M   NL+ WNAMI+GY  N + E+ +KL R MI   IR ++ ++ S +L  + + SL
Sbjct: 244 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL 303

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           +L + +   + KS    DT   T LI MY KCG +  A  +F  +  KDVV W+ MI GY
Sbjct: 304 ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGY 363

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
             HG G++A+ L+++MK  G+ P+  TF+ LL AC ++GLV  G + F  M  D+GI   
Sbjct: 364 GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPH 422

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
             HY+C+VDLLGRAG L +A D I  MP KP  +++G LLSAC++H+++ L E AA  LF
Sbjct: 423 HQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLF 482

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L+P N  G YVQL+N+YA+   W  VA +RL M +  + K  G+S IE+   +  F+ G
Sbjct: 483 ILDPYNT-GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVG 541

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           DR HP+   I E+L  LEKR+K AGYVP +E  LH +  E  E+ L  HSE+LA+A+G+I
Sbjct: 542 DRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGII 601

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               GT +R+ KNLR C +CH A K IS +  REII+RD  RFHHFKDG CSCGD+W
Sbjct: 602 STAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 158/313 (50%), Gaps = 9/313 (2%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS 103
           L+  DV  A   F+ +   D   WN +I G+ QK  +     +++ M      P   +  
Sbjct: 30  LHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFL 89

Query: 104 WSAMISGYIECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +     G      + K +  + FK     +V    +++S Y KFG++  A  +FD++  +
Sbjct: 90  YVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR 149

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            +V+W ++I+GYV+N    + L + + M    ++P+  +L SV+   +++  L  GK +H
Sbjct: 150 TVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIH 209

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            LV K  L  +   +  L +MY K G +E A   F  +++ +++ WNAMISGYA +G GE
Sbjct: 210 GLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGE 269

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +A++LF +M  + ++ DSIT  + +LA    G ++L  ++ D  ++           T +
Sbjct: 270 EAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGL 328

Query: 342 VDLLGRAGKLVEA 354
           +D+  + G +  A
Sbjct: 329 IDMYAKCGSIYLA 341



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 4/240 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            I+  + FG V+ A K F E+   +++ WNA+I GY + +  +  +++   M    + PN
Sbjct: 25  FINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPN 84

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  C   S   +GKQ+H   FK     +      L+SMY K G +  A  +F 
Sbjct: 85  CFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD 144

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++  + VV+W ++ISGY Q+G   +AL +F +M+   +KPD I  V+++ A  +  + DL
Sbjct: 145 KLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA--YTNVEDL 202

Query: 318 GI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           G  +    +V   G+  +PD    +  +  + G LVE          KP   ++  ++S 
Sbjct: 203 GQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLILWNAMISG 261



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           QV+  +  S L K    +   I+     GD+  A K F E+   D++ WNA+I GY Q  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             +  +R++  M+   + P+  TF+ +L AC    +  +G Q        YG  +     
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 123

Query: 339 TCMVDLLGRAGKLVEAVDLIKKM 361
             +V +  + G++  A  +  K+
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKL 146


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 316/544 (58%), Gaps = 40/544 (7%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++ A  N ++  +V++  +  A++LF  M +++  SWS ++ GY + G       +F+ 
Sbjct: 82  FRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRE 141

Query: 127 -----APVKSVVA----------------------------------WTAMISGYMKFGK 147
                AP+    A                                     ++  Y +   
Sbjct: 142 LLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKV 201

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           V+ A ++F +M  ++L TW  MI    E+    + L     M   GI P+  +L +V+  
Sbjct: 202 VEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYA 261

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L ++   K +H  +  +    D    T +I MY KCG +E A  +F  +Q ++V+TW
Sbjct: 262 CAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITW 321

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           +AMI+ Y  HG+GEKAL LF  M   G+ P+ ITFV+LL AC+HAGL++ G ++F SM +
Sbjct: 322 SAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWD 381

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           +YG+     HYTCMVDLLGRAG+L EA+++I+ MP +    ++G LL ACR+H+ LDLAE
Sbjct: 382 EYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAE 441

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
             A +L  L  +   G YV L+NIYA   KW+D+A+ R  M +  + K+PG +WIEVG  
Sbjct: 442 RVARSLLKLQ-SQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEK 500

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 507
           +++F  GD+ HP    I++ LK L +++++AGY PD    L+ V EEVK+ LL  HSEKL
Sbjct: 501 LYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKL 560

Query: 508 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           AIAFGL+ +P G PIR+ KNLRVCGDCH   K++S IE++ IIVRD  RFHHFK+G CSC
Sbjct: 561 AIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSC 620

Query: 568 GDYW 571
            DYW
Sbjct: 621 RDYW 624



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +     S LL C +L  +   +QVH  +  +   ++      L+ MY + G LEDA +LF
Sbjct: 52  DTKRFRSSLLSCRNLFQV---RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELF 108

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             + ++   +W+ ++ GYA+ G       +F ++   G   D  +   ++ AC    L D
Sbjct: 109 DGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACR--DLKD 166

Query: 317 LGIQYFDSMVN-----DYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           L        +      DYG      H+ C  +VD+  R   + +A  +  KM
Sbjct: 167 LKCGRLIHCITLKCGLDYG------HFVCATLVDMYARCKVVEDAHQIFVKM 212


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/613 (36%), Positives = 350/613 (57%), Gaps = 50/613 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCILLNSDDV----VA 57
           T++WNS+L+GF  Q G   +A     E+ D   +PD+V+   +++    + + +    + 
Sbjct: 348 TISWNSMLSGFV-QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIH 406

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A+     L   D    N+++  + +  +M     +F  MP+K+ VSW+ +I+G+ + G  
Sbjct: 407 AYAMKNGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 465

Query: 118 DKAVELFK--------------------------VAPVKSVVAW------------TAMI 139
            +A+ELF+                          ++ VK + ++              ++
Sbjct: 466 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIV 525

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y + G VD A ++F+ +  K++V+W +MI+ YV N  A + L+L  +M   G+ P++ 
Sbjct: 526 DVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSI 585

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           SL S+L   + LS+L+ GK++H  + +     + +  + L+ MY +CG LE +  +F  I
Sbjct: 586 SLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFI 645

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           + KD+V W +MI+ Y  HG G  A+ LF +M+DE + PD I FVA+L AC+H+GL++ G 
Sbjct: 646 RNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 705

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++ +SM  +Y +   P+HY C+VDLLGRA  L EA   +K M  +P   ++  LL AC++
Sbjct: 706 RFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQI 765

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H   +L E AA  L  ++P N  G YV ++N+Y+A ++W DV  +R+ MK + + K PG 
Sbjct: 766 HSNKELGEIAAQKLLEMDPEN-PGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGC 824

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL-EKRMKLAGYVPDLEFALHAVGEEVKEQ 498
           SWIEVG  VH F + D+ HP+   I+ KL ++ EK  K  GYV   +F LH   EE K Q
Sbjct: 825 SWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQ 884

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
           +L  HSE+LAIA+G++  P G  +R+ KNLRVCGDCH   K IS   +RE+++RD  RFH
Sbjct: 885 MLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFH 944

Query: 559 HFKDGTCSCGDYW 571
           HFK G CSCGD W
Sbjct: 945 HFKGGVCSCGDVW 957



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           GQ   A  +   A   SV   T ++  Y K G +  AEKLFD MP K + TWNAMI  YV
Sbjct: 97  GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 156

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            N      L+L R M   GI  +A +   +L  C  L   + G +VH L  K        
Sbjct: 157 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVF 216

Query: 235 ALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
               ++ MY KC DL  A +LF  + +++DVV+WN+MIS Y+ +G+  +ALRLF +M+  
Sbjct: 217 VANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKA 276

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGR 347
            + P++ TFVA L AC  +  +  G+    +++       K  +Y        ++ +  R
Sbjct: 277 SLAPNTYTFVAALQACEDSSFIKQGMFIHATVL-------KSSYYINVFVANALIAMYAR 329

Query: 348 AGKLVEAVDLIKKM 361
            GK+ EA ++   M
Sbjct: 330 FGKMGEAANIFYNM 343



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 202/455 (44%), Gaps = 87/455 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASW--- 73
           G L DA++LFD +P   + ++N M+   + N + +  + + ++ + +     D  ++   
Sbjct: 128 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL-GSLELYREMRVSGIPLDACTFPCI 186

Query: 74  --------------------------------NTMISGFVQKKNMAKARDLFLAMPEKNS 101
                                           N+++  + +  ++  AR LF  MPEK  
Sbjct: 187 LKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 246

Query: 102 V-SWSAMISGYIECGQLDKAVELF------KVAP-------------------------- 128
           V SW++MIS Y   GQ  +A+ LF       +AP                          
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 306

Query: 129 --VKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
             +KS     V    A+I+ Y +FGK+  A  +F  M   + ++WN+M++G+V+N    +
Sbjct: 307 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHE 366

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+    M   G +P+  ++ S++   +   +   G Q+H    K+ L  D      L+ 
Sbjct: 367 ALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVD 426

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K   ++    +F ++  KDVV+W  +I+G+AQ+G   +AL LF +++ EG+  D + 
Sbjct: 427 MYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMM 486

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++LLAC+   L+   ++   S +   G++        +VD+ G  G +  A  + + +
Sbjct: 487 ISSILLACSGLKLIS-SVKEIHSYIIRKGLSDLVLQ-NGIVDVYGECGNVDYAARMFELI 544

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            FK    +  T + +C VH  L      A+ LF+L
Sbjct: 545 EFK--DVVSWTSMISCYVHNGL---ANEALELFHL 574



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 14/184 (7%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           + SSVL  C    +L  G+QVH  ++  + L       T L+ MY KCG L DA KLF  
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  K + TWNAMI  Y  +G+   +L L+ +M+  G+  D+ TF  +L AC   GL  L 
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GL--LK 194

Query: 319 IQYFDSMVNDYGIAAKPDHYT------CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
            + + + V  +G+A K  + +       +V +  +   L  A  L  +MP K     + +
Sbjct: 195 DRRYGAEV--HGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 252

Query: 373 LLSA 376
           ++SA
Sbjct: 253 MISA 256


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/484 (41%), Positives = 311/484 (64%), Gaps = 6/484 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  ++WN+++ G+A+ +G +  A +LF+K+P+ +VVS+N +++   +    V  A +
Sbjct: 155 MPVKNVISWNTMIEGYAR-KGWIDQALDLFEKMPERNVVSWNTVITA-FMQRRRVDEAQE 212

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P +D  SW TM++G  +   +  AR LF  MP +N VSW+ MI GY +  +LD+A
Sbjct: 213 LFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEA 272

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF+  P + + +W  MI+G+++ GK++ A   F +M  KN+VTW A+I+G+V++  +E
Sbjct: 273 FKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSE 332

Query: 181 DGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + LK+   M     ++PN  +  SVL  CS L++L  G+Q+HQ++ K+   +    ++ L
Sbjct: 333 EALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSAL 392

Query: 240 ISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           I+MY KCG+LE A K+F +  I  +DVV+WN MI+ YA HG G KA+ LFD+M+  G +P
Sbjct: 393 INMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRP 452

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D++T++ALL AC+HAGLVD G++ F+++V D  I  + DH+TC+VDL GRAG+L EA D 
Sbjct: 453 DNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDF 512

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           IK +  KP  +++  LL+ C VH  +DL +  A  L    P N AG Y+ L+NIYA+  K
Sbjct: 513 IKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPEN-AGTYLVLSNIYASTGK 571

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + A +R+ MK+  + K PG SWIEVG  VH F  GD  H E  +I+  L +L  +MK 
Sbjct: 572 WREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKK 631

Query: 478 AGYV 481
            G+ 
Sbjct: 632 IGHT 635



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 189/350 (54%), Gaps = 44/350 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +  V+W +V+ G+ K  G +++A+ LFD+     +VV++  ++S   +  + +  A   F
Sbjct: 95  RDVVSWTAVITGYIKC-GMIEEAKTLFDRNDAIKNVVTWTALVSG-YVRWNRIEEARRLF 152

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             +P+K+  SWNTMI G+ +K  + +A DLF  MPE+N VSW+ +I+ +++  ++D+A E
Sbjct: 153 DAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQE 212

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF   P + V++WT M++G  K G++D A  LFD+MP +N+V+WN MI GY +N   ++ 
Sbjct: 213 LFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEA 272

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            KL   M      P                                  ++ ++   +I+ 
Sbjct: 273 FKLFEQM------PE---------------------------------RELSSWNTMITG 293

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSIT 301
           + + G LE A   F ++  K+VVTW A+ISG+ Q G+ E+AL++F +M+    +KP+  T
Sbjct: 294 FIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGT 353

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           FV++L AC+    +  G Q    +++        D  + ++++  + G+L
Sbjct: 354 FVSVLGACSKLAALCEG-QQIHQIISKTVYQEVADVVSALINMYSKCGEL 402



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 172/323 (53%), Gaps = 28/323 (8%)

Query: 66  PIKD------TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           P++D       A  N +I+   ++  + +AR +F  MP+++ VSW+A+I+GYI+CG +++
Sbjct: 56  PVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEE 115

Query: 120 AVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           A  LF +   +K+VV WTA++SGY+++ +++ A +LFD MP KN+++WN MI GY    W
Sbjct: 116 AKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGW 175

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            +  L L   M       N  S ++V+        +    +  +L  + P  +D  + T 
Sbjct: 176 IDQALDLFEKM----PERNVVSWNTVITAFMQRRRVD---EAQELFNRMPE-RDVISWTT 227

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +++   K G ++DA  LF ++  ++VV+WN MI GYAQ+ + ++A +LF++M +  +   
Sbjct: 228 MVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSW 287

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           +      +      G ++  + +F  M N   +      +T ++    + G+  EA+ + 
Sbjct: 288 NTMITGFI----QNGKLERAVDFFYKMSNKNVVT-----WTAVISGHVQDGRSEEALKIF 338

Query: 359 KKMP----FKPQPAIFGTLLSAC 377
            +M      KP    F ++L AC
Sbjct: 339 SEMQAANNVKPNEGTFVSVLGAC 361


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 340/639 (53%), Gaps = 80/639 (12%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
            NS++A + K  G++  A +LFD++   DVVS+N M+S  ++N     A   F Q L ++ 
Sbjct: 592  NSLIATYFKS-GEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV 650

Query: 69   --DTASW-----------------------------------NTMISGFVQKKNMAKARD 91
              D A+                                    NT++  + +  N+  A  
Sbjct: 651  GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQ 710

Query: 92   LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV------------------ 133
             F  M +K  VSW+++I+ Y+  G  D A+ LF     K V                   
Sbjct: 711  AFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNS 770

Query: 134  ---------------------AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                                    A++  Y K G ++ A  +F ++P K++V+WN MI G
Sbjct: 771  LDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG 830

Query: 173  YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            Y +NS   + LKL   M     RP+  +++ +L  C  L++L++G+ +H  + ++    +
Sbjct: 831  YSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSE 889

Query: 233  TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                  LI MY KCG L  A  LF  I  KD++TW  MISG   HG G +A+  F KM+ 
Sbjct: 890  LHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRI 949

Query: 293  EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             G+KPD ITF ++L AC+H+GL++ G  +F+SM+++  +  K +HY CMVDLL R G L 
Sbjct: 950  AGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLS 1009

Query: 353  EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            +A +LI+ MP KP   I+G LL  CR+H  ++LAE  A ++F L P N AG YV LANIY
Sbjct: 1010 KAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDN-AGYYVLLANIY 1068

Query: 413  AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
            A  +KW++V ++R  + +  + K PG SWIEV      F S D  HP+  SI   L  L 
Sbjct: 1069 AEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLR 1128

Query: 473  KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
             +MK  G+ P + +AL   G+  KE  L  HSEKLA+AFG++ +P G  IRV KNLRVC 
Sbjct: 1129 IKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCD 1188

Query: 533  DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH   K++S   +REII+RD+ RFHHFKDG CSC D+W
Sbjct: 1189 DCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 202/407 (49%), Gaps = 17/407 (4%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDF 61
            +  ++ +L  FA   G++ + + +   + +    SYN +++ ++     S +V +A   
Sbjct: 552 NSYTFSCILKCFA-TLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKL 610

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQ---- 116
           F  L  +D  SWN+MISG V       A + F+ M   +  V  + +++    C      
Sbjct: 611 FDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSL 670

Query: 117 -LDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            L +A+  +  K    + V+    ++  Y K G ++ A + F++M  K +V+W ++IA Y
Sbjct: 671 SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAY 730

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V     +D ++L   M   G+ P+  S++SVL  C+  +SL  G+ VH  + K+ +    
Sbjct: 731 VREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCL 790

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY KCG +E+A  +F +I  KD+V+WN MI GY+++    +AL+LF +M+ E
Sbjct: 791 PVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKE 850

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
             +PD IT   LL AC     +++G      ++ + G +++      ++D+  + G LV 
Sbjct: 851 S-RPDGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVH 908

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
           A  L   +P K     +  ++S C +H   +  +A F  M +  + P
Sbjct: 909 ARLLFDMIPEK-DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKP 954



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 159/302 (52%), Gaps = 13/302 (4%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYI------ECGQLDKAVE 122
           WN M+S + +  +  ++  LF  M +     NS ++S ++  +       EC ++   V 
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                   +VV   ++I+ Y K G+VD A KLFDE+  +++V+WN+MI+G V N ++   
Sbjct: 581 KLGFGSYNTVV--NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSA 638

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L+    M+ L +  + ++L + +  C+++ SL LG+ +H    K+   ++      L+ M
Sbjct: 639 LEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDM 698

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG+L DA + F ++ +K VV+W ++I+ Y + G  + A+RLF +M+ +G+ PD  + 
Sbjct: 699 YSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSM 758

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            ++L AC     +D G    + +  +      P     ++D+  + G + EA  +  ++P
Sbjct: 759 TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS-NALMDMYAKCGSMEEAYLVFSQIP 817

Query: 363 FK 364
            K
Sbjct: 818 VK 819



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N  I  + E     + ++LLRM     +  NA   SS+L  C+    LQ GK VH ++  
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNA--YSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD-VVTWNAMISGYAQHGKGEKALR 285
           + +  +      L+ MY  CG L +  ++F  I   + V  WN M+S YA+ G   +++ 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 286 LFDKMKDEGMKPDSITFVALLLA---------CN--HAGLVDLGIQYFDSMVN 327
           LF KM+  G+  +S TF  +L           C   H  +  LG   ++++VN
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVN 592


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/658 (37%), Positives = 361/658 (54%), Gaps = 106/658 (16%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC-------------------- 47
           ++N+++  +AK    +  A+++FD+IPQPD+VSYN +++                     
Sbjct: 77  SYNTLINAYAKH-SLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVREL 135

Query: 48  ------------ILLNSDDV-----------VAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                       I+   DDV           V  +D +  +        N +++ + +K 
Sbjct: 136 RFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVN-------NAVLACYSRKG 188

Query: 85  NMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDK---AVELFK------------- 125
            + +AR +F  M E   ++ VSW+AMI   + CGQ  +   AVELF+             
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMI---VACGQHREGLEAVELFREMVRRGLKVDMFT 245

Query: 126 VAPVKSVVAWTAMISGYMKF-----------------GKVDL----------AEKLFDEM 158
           +A V +       + G M+F                 G +DL            K+F+E+
Sbjct: 246 MASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEI 305

Query: 159 PTKNLVTWNAMIAGYVE-NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
              +LV WN MI+G+ +    +EDG+   R M   G  P+  S   V   CS+LSS  +G
Sbjct: 306 AAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVG 365

Query: 218 KQVHQLVFKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           KQVH L  KS +  +  ++   L++MY KCG++ DA ++F  +   ++V+ N+MI+GYAQ
Sbjct: 366 KQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQ 425

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG   ++LRLF+ M  + + P++ITF+A+L AC H G V+ G +YF+ M   + I  + +
Sbjct: 426 HGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAE 485

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY+CM+DLLGRAGKL EA  +I+ MPF P    + TLL ACR H  ++LA  AA     L
Sbjct: 486 HYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQL 545

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P NAA  YV L+N+YA+  +W++ A ++  M+E  V K PG SWIE+   VH F + D 
Sbjct: 546 EPYNAAP-YVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDT 604

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGL 513
            HP +  IH  + E+ ++MK AGYVPD+ +AL     V  + KE+ LL+HSEKLA+AFGL
Sbjct: 605 SHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGL 664

Query: 514 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I      PI V KNLR+CGDCH A K ISAI  REI VRDT RFH FK+G CSCGDYW
Sbjct: 665 ISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 132/270 (48%), Gaps = 8/270 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +CG L  A   F +    +V ++  +I+ Y K   + LA ++FDE+P  ++V++N +I
Sbjct: 54  YSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLI 113

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A Y +       L+L   +  L    +  +LS V++ C     + L +Q+H  V      
Sbjct: 114 AAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVVVCGYD 171

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLF 287
              +    +++ Y + G L +A ++F E+     +D V+WNAMI    QH +G +A+ LF
Sbjct: 172 CYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELF 231

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M   G+K D  T  ++L A      +  G+Q+   M+   G        + ++DL  +
Sbjct: 232 REMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKS-GFHGNSHVGSGLIDLYSK 290

Query: 348 -AGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            AG +VE   + +++   P   ++ T++S 
Sbjct: 291 CAGGMVECRKVFEEIA-APDLVLWNTMISG 319



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 32/148 (21%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC------ 253
           +  ++L  C     L  GK +H L FKS +   T        +Y KCG L +A       
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 254 -------------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
                                    ++F EI + D+V++N +I+ YA  G+   ALRLF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 289 KMKDEGMKPDSITFVALLLAC-NHAGLV 315
           ++++     D  T   +++AC +  GLV
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLV 158


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/522 (41%), Positives = 307/522 (58%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F R+P +D  +W+TM++GFV       A  ++  M E        ++ G I+    
Sbjct: 162 AVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            + V         L +      VV  T+++  Y K G +D+A ++F  M  +N V+W+AM
Sbjct: 222 ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM 281

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+G+ +N  +++ L+L R M   GI+P++ +L S LL CS++  L+LG+ VH  + +   
Sbjct: 282 ISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-F 340

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             +    T  I MY KCG L  A  LF  I  +D++ WNAMI+    HG+G+ AL LF +
Sbjct: 341 DFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQE 400

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M + GM+PD  TF +LL A +H+GLV+ G  +F  MVN + I     HY C+VDLL R+G
Sbjct: 401 MNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSG 460

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            + EA DL+  M  +P  AI+  LLS C  +K+L+L E  A N+  L P +  G    ++
Sbjct: 461 LVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDV-GVLALVS 519

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YAA KKWD V ++R  MK++   KMPG S IE+    H F   D+ HP+   I  K+ 
Sbjct: 520 NLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVA 579

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L+  M+  GY+P  EF  H + EEVKEQ L +HSE+LAIAFGL+    GT + + KNLR
Sbjct: 580 KLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLR 639

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A KYIS I  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 640 VCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 167/335 (49%), Gaps = 24/335 (7%)

Query: 82  QKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVA 134
           ++ + A A  +F A+P     +S +++  +S     G L     +    F       V  
Sbjct: 86  RRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFV 145

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            ++++  Y ++G +  A K+F  MP ++ VTW+ M+AG+V      D +++ R M   G+
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV 205

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +   +  V+  C+   ++++G  VH  + +  +  D    T L+ MY K G L+ AC+
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 255 LF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +F L + R DV +W+AMISG+AQ+G+ ++ALRLF  M+  G++PDS   V+ LLAC++ G
Sbjct: 266 VFGLMVHRNDV-SWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCM-----VDLLGRAGKLVEAVDLIKKMPFKPQPA 368
            + LG          +G   +   + C+     +D+  + G L  A  ++  M       
Sbjct: 325 FLKLGRSV-------HGFIVRRFDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLI 376

Query: 369 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNPANA 401
           ++  +++ C  H R    L  F  MN   + P +A
Sbjct: 377 LWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHA 411


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 337/564 (59%), Gaps = 14/564 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQR---LPIKDTASWNT 75
           G L  A+ LFD+    D+VSYN M+     +   +  +  F   Q    LP + T     
Sbjct: 160 GNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALF 219

Query: 76  MISGFVQKKNMAKA--RDLF--LAMPEKNSVSWSAMISGYIECGQLDKAVELFK-VAPVK 130
            +   + + N+ K     ++  L   + N +  SA++  Y +CG ++ A  +F  +   K
Sbjct: 220 SVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSK 279

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           S  AW++M+ GY + G++++A KLF+ M  +++++W AMI+GY +     + L+L + M 
Sbjct: 280 SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEME 339

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDL 249
            LGI+P+  +L +VL  C+ L +  LGK++ HQ +      ++T     ++ MY KCG +
Sbjct: 340 ALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSI 399

Query: 250 EDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           + A ++F  + +  K    +N+MI+G AQHG GE A+ +F ++   G+KPD +TFV +L 
Sbjct: 400 DSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLC 459

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC H+GL++ G + F+SM N YGI  + +HY CMVDLLGR G L EA DL++KMPF+   
Sbjct: 460 ACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS 519

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            I+  LLSACR H  + + E A   L  +   + A  YV L+NI A   +W++  ++R  
Sbjct: 520 VIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGAR-YVLLSNILADANQWEEARQVRKV 578

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M+++ + K PG+S+IE+G  +H F + D+ HP+   I   LK++  R+K AGYVP+    
Sbjct: 579 MEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQV 638

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           +  + EE KE ++ +HSEKLA+AFGL+       IR+ KNLR+C DCH+A K +S I  R
Sbjct: 639 MFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGR 698

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EI VRDT RFHHF++G+CSC D+W
Sbjct: 699 EITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 43/344 (12%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECG 115
            F ++   +   WNTMI G+ +  N  +A  L+++M  K     N+ ++  +++      
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 116 QLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            L+   E    + K      +    A+I  Y  FG ++LA  LFDE   ++LV++N MI 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---- 227
           GY E +  E  L L   M   GI P+  +  ++   CS L+   +GKQ+H  V+K+    
Sbjct: 186 GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 228 ------------------------------PLCKDTTALTPLISMYCKCGDLEDACKLFL 257
                                            K   A + ++  Y +CG++  A KLF 
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +DV++W AMISGY+Q G+  +AL LF +M+  G+KPD +T VA+L AC   G  DL
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDL 365

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G + +   + +            ++D+  + G +  A+++ +++
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 143/352 (40%), Gaps = 76/352 (21%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLL 206
           +D +  LF ++   NL  WN MI GY  +    + + L   MI  GI P N  +   +L 
Sbjct: 60  LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLN 119

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+ LSSL+ G +VH  + K     D      LI +Y   G+L  A  LF E   +D+V+
Sbjct: 120 SCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVS 179

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HA--- 312
           +N MI GYA+  + E AL LF +M++ G+ PD  TFVAL   C+           HA   
Sbjct: 180 YNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVY 239

Query: 313 -----------------------GLVDLGIQYFDSMVNDYGIAAKPD------------- 336
                                  GL+++  + F +M      AA                
Sbjct: 240 KNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINV 299

Query: 337 --------------HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRV 379
                          +T M+    +AG+  EA++L K+M     KP       +LSAC  
Sbjct: 300 ARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACAR 359

Query: 380 HKRLDLA-----EFAAMNLFNLNPANAAGC---YVQLANIYAAMKKWDDVAR 423
               DL      ++    +FN N    A     Y +  +I +A++ +  V +
Sbjct: 360 LGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGK 411



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 21/295 (7%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           ++ + +   S +     + G +  A+ +F  +      +    + C      ++  A   
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  +  +D  SW  MISG+ Q    ++A +LF  M     + + V+  A++S     G  
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 118 DKAVELFKVAPVKSV-----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT---WNAM 169
           D    L+       V     +   A++  Y K G +D A ++F  +  KN+ T   +N+M
Sbjct: 364 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV-GKNMKTGFVFNSM 422

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-- 227
           IAG  ++   E  + + R +I  G++P+  +   VL  C H   ++ GK++ + +F +  
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482

Query: 228 --PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 279
             P  +    +  L+  Y   G LE+A  L  ++    + V W A++S    HG 
Sbjct: 483 IKPQMEHYGCMVDLLGRY---GCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN 534


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/537 (40%), Positives = 317/537 (59%), Gaps = 41/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N+++S + +   ++ AR +F  + ++  VSW+++ISGY++ G   +A+ +FK        
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVK 198

Query: 126 ---VAPVKSVVAWT----------------------------AMISGYMKFGKVDLAEKL 154
              +A V  + A+T                            ++ + Y K G V++A   
Sbjct: 199 PDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFF 258

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F+ M   NL+ WNAMI+GY  N + E+ +KL R MI   IR ++ ++ S +L  + + SL
Sbjct: 259 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL 318

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           +L + +   + KS    DT   T LI MY KCG +  A  +F  +  KDVV W+ MI GY
Sbjct: 319 ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGY 378

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
             HG G++A+ L+++MK  G+ P+  TF+ LL AC ++GLV  G + F  M  D+GI   
Sbjct: 379 GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPH 437

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
             HY+C+VDLLGRAG L +A D I  MP KP  +++G LLSAC++H+++ L E AA  LF
Sbjct: 438 HQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLF 497

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L+P N  G YVQL+N+YA+   W  VA +RL M +  + K  G+S IE+   +  F+ G
Sbjct: 498 ILDPYNT-GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVG 556

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           DR HP+   I E+L  LEKR+K AGYVP +E  LH +  E  E+ L  HSE+LA+A+G+I
Sbjct: 557 DRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGII 616

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               GT +R+ KNLR C +CH A K IS +  REII+RD  RFHHFKDG CSCGD+W
Sbjct: 617 STAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 158/313 (50%), Gaps = 9/313 (2%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS 103
           L+  DV  A   F+ +   D   WN +I G+ QK  +     +++ M      P   +  
Sbjct: 45  LHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFL 104

Query: 104 WSAMISGYIECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +     G      + K +  + FK     +V    +++S Y KFG++  A  +FD++  +
Sbjct: 105 YVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR 164

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            +V+W ++I+GYV+N    + L + + M    ++P+  +L SV+   +++  L  GK +H
Sbjct: 165 TVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIH 224

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            LV K  L  +   +  L +MY K G +E A   F  +++ +++ WNAMISGYA +G GE
Sbjct: 225 GLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGE 284

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +A++LF +M  + ++ DSIT  + +LA    G ++L  ++ D  ++           T +
Sbjct: 285 EAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGL 343

Query: 342 VDLLGRAGKLVEA 354
           +D+  + G +  A
Sbjct: 344 IDMYAKCGSIYLA 356



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 4/239 (1%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I+  + FG V+ A K F E+   +++ WNA+I GY + +  +  +++   M    + PN 
Sbjct: 41  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNC 100

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +   VL  C   S   +GKQ+H   FK     +      L+SMY K G +  A  +F +
Sbjct: 101 FTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDK 160

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  + VV+W ++ISGY Q+G   +AL +F +M+   +KPD I  V+++ A  +  + DLG
Sbjct: 161 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA--YTNVEDLG 218

Query: 319 I-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
             +    +V   G+  +PD    +  +  + G LVE          KP   ++  ++S 
Sbjct: 219 QGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLILWNAMISG 276



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           QV+  +  S L K    +   I+     GD+  A K F E+   D++ WNA+I GY Q  
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             +  +R++  M+   + P+  TF+ +L AC    +  +G Q        YG  +     
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 138

Query: 339 TCMVDLLGRAGKLVEAVDLIKKM 361
             +V +  + G++  A  +  K+
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKL 161


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/507 (42%), Positives = 313/507 (61%), Gaps = 36/507 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAF 59
           M  + TV+WNS++ G+ K  G   +++ LF  +P  +VVS+N M++ CI    + +  A+
Sbjct: 73  MPHRDTVSWNSIITGYWKN-GCFDESKRLFGLMPTKNVVSWNSMIAGCI--EDERIDEAW 129

Query: 60  DFFQRLPIKDTASWNTMISGFVQ---------------KKN----------------MAK 88
            +FQ +P ++TASWN MISG V+               ++N                + +
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
           AR LF  MP+KN VSW+ MISGY+E G+ D+A  LF+  P K++VA TAMI+GY K GK 
Sbjct: 190 ARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKT 249

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D A+ LFD++P ++L +WNAMI GY +N   E+ LKL   M+ +G++P+ S+L SVL  C
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           S L+SLQ G++ H LV KS      +    LI+MYCKCG + D+   F +I   DVV+WN
Sbjct: 310 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 369

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI+ +A+HG  ++AL  F +M+   ++PD ITF++LL AC HAG V   + +F+SM+  
Sbjct: 370 AMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIES 429

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           Y I  +P+H+ C+VD+L R G++ +A  +I++MPF+    I+G LL+AC VH  + L E 
Sbjct: 430 YKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGEL 489

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           AA  +  L P N +G YV L+NIYAA   W +V R+R  M+E  V K P YSW+E+   V
Sbjct: 490 AAKKIVELEPQN-SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKV 548

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRM 475
           H F   D  HPE+  I  +LK ++ +M
Sbjct: 549 HFFLGDDASHPEIHRIRLELKGMKLQM 575



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 181/360 (50%), Gaps = 35/360 (9%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D  ++N  I    +  N+  AR LF  MP +++VSW+++I+GY + G  D++  LF + 
Sbjct: 45  QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P K+VV+W +MI+G ++  ++D A + F  MP +N  +WNAMI+G V     E+  +L  
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL------------------------ 223
            M     R N  S ++++ G + +  ++  + +                           
Sbjct: 165 EM----PRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDE 220

Query: 224 ---VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
              +F+    K+  A+T +I+ YCK G  + A  LF +I  +D+ +WNAMI+GYAQ+G G
Sbjct: 221 AENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 280

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           E+AL+L  +M   GM+PD  T +++L AC+    +  G +    +V   G  ++      
Sbjct: 281 EEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG-RKTHVLVLKSGYESRISICNA 339

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
           ++ +  + G ++++ +L  +    P    +  +++A   H   D  LA F  M    + P
Sbjct: 340 LITMYCKCGSILDS-ELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEP 398



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K+   + V A+   I    + G +  A +LFDEMP ++ V+WN++I GY +N   ++  +
Sbjct: 40  KLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKR 99

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL--------------------- 223
           L     GL    N  S +S++ GC     +    Q  Q                      
Sbjct: 100 LF----GLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDR 155

Query: 224 ------VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
                 +F+    ++  + T ++  Y K G++E A  LF  + +K+VV+W  MISGY ++
Sbjct: 156 VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 215

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPD 336
           GK ++A  LF++M D+ +    +   A++      G  D     FD +   D        
Sbjct: 216 GKFDEAENLFEQMPDKNI----VAMTAMITGYCKEGKTDKAKILFDQIPCRDLA------ 265

Query: 337 HYTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
            +  M+    + G   EA+ L   + KM  +P  +   ++L+AC
Sbjct: 266 SWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 16/222 (7%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
             +Q H L  K    +D  A    I    + G++  A +LF E+  +D V+WN++I+GY 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYW 89

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           ++G  +++ RLF  M  + +    +++ +++  C     +D   QYF +M          
Sbjct: 90  KNGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQYFQAMPQR-----NT 140

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF-AAMNLF 394
             +  M+  L R  ++ EA  L ++MP +        +     V     + E   A  LF
Sbjct: 141 ASWNAMISGLVRYDRVEEASRLFEEMPRR------NVISYTAMVDGYAKIGEIEQARALF 194

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           N  P      +  + + Y    K+D+   +   M + N+V M
Sbjct: 195 NCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM 236


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/599 (38%), Positives = 336/599 (56%), Gaps = 75/599 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S++A + K  G+ +DA+++FD+    DVVSY                            
Sbjct: 142 TSLIAMYVKN-GRXEDARKVFDQSSHRDVVSYT--------------------------- 173

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---- 125
                 +I G+     +  A+ +F  +P K+ VSW+A+ISGY E G   +A+ELFK    
Sbjct: 174 -----ALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMK 228

Query: 126 --VAPVKS--------------------VVAW-------------TAMISGYMKFGKVDL 150
             V P +S                    V +W              A+I  Y+K G+V+ 
Sbjct: 229 TNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A  LF+ +  K++++WN +I GY   +  ++ L L + M+  G  PN  ++ S+L  C+H
Sbjct: 289 ASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAH 348

Query: 211 LSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           L ++ +G+ +H  + K    +   ++  T LI MY KCGD+E A ++F  +  + + +WN
Sbjct: 349 LGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI G+A HG+   A  +F +M+ +G++PD ITFV LL AC+H+G++DLG   F SM  D
Sbjct: 409 AMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTED 468

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           Y I  K +HY CM+DLLG +G   EA ++I  M   P   I+ +LL AC++H  ++L E 
Sbjct: 469 YKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGES 528

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
            A NL  + P N+ G YV L+NIYA   +W++VA+ R  + +  + K+PG S IE+ +VV
Sbjct: 529 FAQNLIKIEPKNS-GSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEF  GD++HP    I+  L+E+E  ++ AG+VPD    L  + EE KE  L  HSEKLA
Sbjct: 588 HEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 647

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 567
           IAFGLI    GT + + KNLRVC +CH ATK IS I KREII RD TRFHHF DG CSC
Sbjct: 648 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 119/251 (47%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +FD +   NL+ WN M  G+  +S     L L   MI LG+ PN+ +   +
Sbjct: 50  FDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFL 109

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------------- 251
           L  C+   + + G+Q+H  V K     D    T LI+MY K G  ED             
Sbjct: 110 LKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDV 169

Query: 252 ------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                             A K+F EI  KDVV+WNA+ISGYA+ G  ++AL LF +M   
Sbjct: 170 VSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKT 229

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            +KPD  T V +L AC  +  ++LG Q   S ++D+G  +       ++DL  + G++  
Sbjct: 230 NVKPDESTMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 354 AVDLIKKMPFK 364
           A  L + + +K
Sbjct: 289 ASGLFEGLSYK 299



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 153/372 (41%), Gaps = 82/372 (22%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSC----------- 47
           VK  V+WN++++G+A + G  K+A ELF ++     +PD  +   +LS            
Sbjct: 197 VKDVVSWNALISGYA-ETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGR 255

Query: 48  -----------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                  + +   +V  A   F+ L  KD  SWNT+I G+    
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMN 315

Query: 85  NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
              +A  LF  M       N V+  +++      G +D  + + ++    +K V      
Sbjct: 316 LYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSL 375

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T++I  Y K G ++ A+++FD M  ++L +WNAMI G+  +  A     +   M   GI
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGI 435

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   +L  CSH   L LG+     +F+S    +   +TP +  Y           
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRH----IFRS--MTEDYKITPKLEHY----------- 478

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                          MI      G  ++A  + + M+   M PD + + +LL AC   G 
Sbjct: 479 -------------GCMIDLLGHSGLFKEAEEMINSME---MDPDGVIWCSLLKACKMHGN 522

Query: 315 VDLGIQYFDSMV 326
           V+LG  +  +++
Sbjct: 523 VELGESFAQNLI 534


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/523 (41%), Positives = 305/523 (58%), Gaps = 10/523 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F+ +   D   +N+M  G+ +  N  +   LF+ + E   +  +      ++   +
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            KA+E          K+    +V     +I+ Y +   VD A  +FD +    +V +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY   +   + L L R M G  ++PN  +L SVL  C+ L SL LGK +H+   K   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
           CK     T LI M+ KCG L+DA  +F +++ KD   W+AMI  YA HGK EK++ +F++
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+ E ++PD ITF+ LL AC+H G V+ G +YF  MV+ +GI     HY  MVDLL RAG
Sbjct: 322 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAG 381

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L +A + I K+P  P P ++  LL+AC  H  LDLAE  +  +F L+ ++  G YV L+
Sbjct: 382 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH-GGDYVILS 440

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YA  KKW+ V  +R  MK+   VK+PG S IEV  VVHEF SGD V      +H  L 
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500

Query: 470 ELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
           E+ K +KL+GYVPD    +HA + ++ KE  L +HSEKLAI FGL+  P GT IRV KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVC DCH A K IS I  R++++RD  RFHHF+DG CSCGD+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF-------GKVDLAEKLFDEMPTKNLVT 165
           +C  L + +++   A +KS +   + ++  + F         +  A  LF+ M   ++V 
Sbjct: 38  KCNSLRELMQIQAYA-IKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVI 96

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           +N+M  GY   +   +   L   ++  GI P+  +  S+L  C+   +L+ G+Q+H L  
Sbjct: 97  FNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSM 156

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K  L  +      LI+MY +C D++ A  +F  I    VV +NAMI+GYA+  +  +AL 
Sbjct: 157 KLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALS 216

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF +M+ + +KP+ IT +++L +C   G +DLG ++       +         T ++D+ 
Sbjct: 217 LFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMF 275

Query: 346 GRAGKLVEAVDLIKKMPFKPQPA 368
            + G L +AV + +KM +K   A
Sbjct: 276 AKCGSLDDAVSIFEKMRYKDTQA 298



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 114/248 (45%), Gaps = 10/248 (4%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
           +DV +A   F R+       +N MI+G+ ++    +A  LF  M  K    N ++  +++
Sbjct: 178 EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S     G LD    + K A   S   +    TA+I  + K G +D A  +F++M  K+  
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ 297

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQL 223
            W+AMI  Y  +  AE  + +   M    ++P+  +   +L  CSH   ++ G++   Q+
Sbjct: 298 AWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQM 357

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWNAMISGYAQHGKGEK 282
           V K  +         ++ +  + G+LEDA +   ++      + W  +++  + H   + 
Sbjct: 358 VSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDL 417

Query: 283 ALRLFDKM 290
           A ++ +++
Sbjct: 418 AEKVSERI 425



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 39/221 (17%)

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED----ACKLFLEIQ 260
           +L  S  +SL+   Q+     KS + +D + +  LI+ +C     E     A  LF  + 
Sbjct: 33  ILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLIN-FCTESPTESSMSYARHLFEAMS 90

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             D+V +N+M  GY++     +   LF ++ ++G+ PD+ TF +LL AC  A  ++ G Q
Sbjct: 91  EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150

Query: 321 YF---------------DSMVNDYGIAAKPDHYTCMVDLL---------------GRAGK 350
                             +++N Y      D   C+ D +                R  +
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 351 LVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEF 388
             EA+ L ++M     KP      ++LS+C +   LDL ++
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/439 (45%), Positives = 282/439 (64%), Gaps = 5/439 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y +FG V  A  +FDEMP KN+V+W+AMIA Y +N    + L+L R M+ L   
Sbjct: 213 TTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMM-LNTH 271

Query: 196 ---PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              PN+ ++ SVL  C+  ++L+ GK +H  + +  L      ++ LI+MY +CG LE  
Sbjct: 272 DSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESG 331

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             +F  + +KDVV WN++IS Y  HG G KA+++F++M D G  P  I+F+++L AC+H 
Sbjct: 332 QLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHT 391

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G + F+SMV ++GI    +HY CMVDLLGRA +L EA  +I+ +  +P P ++G+
Sbjct: 392 GLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGS 451

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL ACR+H  ++LAE A+  LF L P N AG YV LA+IYA  + WD+V R++  +    
Sbjct: 452 LLGACRIHCHVELAERASKRLFKLEPTN-AGNYVLLADIYAEAEMWDEVKRVKKLLDSRE 510

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K+PG SWIEV   ++ F S D  +P+   +H  L  L   MK  GY P  +  L+ + 
Sbjct: 511 LQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLD 570

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           +E KE+++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS    REI+VR
Sbjct: 571 QEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVR 630

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHFKDG CSCGDYW
Sbjct: 631 DLNRFHHFKDGVCSCGDYW 649



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 158/337 (46%), Gaps = 18/337 (5%)

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA--MISGYIE 113
           V++F F    P    ++ N +I    ++ N+ +A  L+L   E N    +   +I     
Sbjct: 26  VSSFSFNPSTP--PNSNNNHLIQSLCKQGNLKQA--LYLLSHESNPTQQTCELLILSAAR 81

Query: 114 CGQLDKAVELFKV----APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              L  A+++ ++       +     T +I+ + +   VD A K+FD+   + +  WNA+
Sbjct: 82  RNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNAL 141

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH----LSSLQLGKQVHQLVF 225
                      D L+L   M  +G+  +  + + +L  C      +S LQ GK++H  + 
Sbjct: 142 FRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHIL 201

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +         +T L+ MY + G +  A  +F E+  K+VV+W+AMI+ YA++GK  +AL 
Sbjct: 202 RHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALE 261

Query: 286 LFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           LF +M        P+S+T V++L AC     ++ G +   + +   G+ +     + ++ 
Sbjct: 262 LFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQG-KLIHAYILRRGLDSILPVISALIT 320

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           +  R GKL E+  LI     K    ++ +L+S+  +H
Sbjct: 321 MYARCGKL-ESGQLIFDRMHKKDVVLWNSLISSYGLH 356



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 32/204 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK--IPQPDVVSYNIMLSCILLNSDDVVAA 58
           M VK  V+W++++A +AK  GK  +A ELF +  +   D V  ++ +  +L       AA
Sbjct: 235 MPVKNVVSWSAMIACYAKN-GKPYEALELFREMMLNTHDSVPNSVTMVSVL----QACAA 289

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           F   ++           +I  ++ ++ +    D  L +        SA+I+ Y  CG+L+
Sbjct: 290 FAALEQ---------GKLIHAYILRRGL----DSILPV-------ISALITMYARCGKLE 329

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYV 174
               +F     K VV W ++IS Y   G    A K+F+EM     + + +++ +++    
Sbjct: 330 SGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACS 389

Query: 175 ENSWAEDGLKLLRMMIG-LGIRPN 197
                E+G KL   M+   GI+P+
Sbjct: 390 HTGLVEEGKKLFESMVKEHGIQPS 413


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 319/535 (59%), Gaps = 12/535 (2%)

Query: 48  ILLNSDDVVA-AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSV 102
           +L N  D +  A + F  +P K+  SW  MIS + Q+    +A +LF+ M     E N  
Sbjct: 133 VLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHF 192

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +++ +++        +   ++  +A  ++    +   ++++  Y K G++  A  +F  +
Sbjct: 193 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 252

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P +++V   A+I+GY +    E+ LKL R +   G+  N+ + +SVL   S L++L  GK
Sbjct: 253 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGK 312

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           QVH  V +S        L  LI MY KCG++  A ++F  +  +  ++WNAM+ GY++HG
Sbjct: 313 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 372

Query: 279 KGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPD 336
              + L LF  M++E  +KPDSIT++A+L  C+H  L D+G++ F +MVN   GI     
Sbjct: 373 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 432

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY C+VDLLGRAG++ EA D IKKMPF P  AI+G+LL +CRVH  +++       L  L
Sbjct: 433 HYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLEL 492

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P NA G YV L+N+YA+  KW+D+  IR  M+E  V K PG SW+E+  +VH F + D 
Sbjct: 493 EPENA-GNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDH 551

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
            HP    + +K+KEL  + K  GYVPDL   L+ V EE KE++LL HSEKLA+AFGLI  
Sbjct: 552 THPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIAT 611

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           P GT IRV KNLR+C DCH   K++S +  R +I+RD  RFH+   G CSCGDYW
Sbjct: 612 PEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + K   + SV   T +I  Y K   +  A ++FDEMP KN+V+W AMI+ Y +  +A 
Sbjct: 114 THMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAF 173

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L L   M+     PN  + +++L  C      + G+Q+H +  K          + L+
Sbjct: 174 EALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLL 233

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY K G + DA  +F  +  +DVV   A+ISGYAQ G  E+AL+LF +++ EGM  +S+
Sbjct: 234 DMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSV 293

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+ ++L A +    ++ G Q   S V   G  +       ++D+  + G +  A  +   
Sbjct: 294 TYASVLTALSGLAALNHGKQ-VHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDS 352

Query: 361 MP 362
           MP
Sbjct: 353 MP 354



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 14/184 (7%)

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           LL+M I LG         ++L  C    +++ G++VH  + K+         T LI +Y 
Sbjct: 78  LLQMAI-LGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYN 136

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KC  L DA ++F E+ +K+VV+W AMIS Y+Q G   +AL LF +M     +P+  TF  
Sbjct: 137 KCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFAT 196

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM------VDLLGRAGKLVEAVDLI 358
           +L +C        G   F++    + IA K ++ + M      +D+  ++G++ +A  + 
Sbjct: 197 ILTSC-------YGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF 249

Query: 359 KKMP 362
             +P
Sbjct: 250 HCLP 253



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 19/215 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +S+L  +AK  G++ DA  +F  +P+ DVV+   ++S       D   A   F++L I+ 
Sbjct: 230 SSLLDMYAKS-GRICDAHGVFHCLPERDVVACTAIISGYAQMGLD-EEALKLFRQLQIEG 287

Query: 70  T-------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAV 121
                   AS  T +SG     +  +     L   + + V   +++I  Y +CG +  A 
Sbjct: 288 MNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYAR 347

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-----TWNAMIAGYVEN 176
            +F   P ++ ++W AM+ GY K G      +LF  M  +N V     T+ A+++G    
Sbjct: 348 RIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHG 407

Query: 177 SWAEDGLKLLRMMIGL--GIRPNASSLSSV--LLG 207
              + GL++   M+    GI P+      V  LLG
Sbjct: 408 QLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLG 442


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 341/589 (57%), Gaps = 34/589 (5%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS--DD 54
            M  + T +WNS+++ +A   G L DA  LF ++     +PD+V++N +LS   L+   ++
Sbjct: 836  MENRNTSSWNSMISSYAAL-GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 894

Query: 55   VVAAFDFFQRLPIKDTASWNTMIS------GFVQKKNMAKARDLFLAMPEKNSVSW--SA 106
            V+      Q    K  +S  T +       GF+   NM K    ++     +   +  ++
Sbjct: 895  VLNILQRMQGEGFKPNSSSMTSVLQAISELGFL---NMGKETHGYVLRNGFDCDVYVGTS 951

Query: 107  MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----N 162
            +I  Y++   L  A  +F     +++ AW +++SGY   G  + A +L ++M  +    +
Sbjct: 952  LIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD 1011

Query: 163  LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            LVTWN MI+GY     A                PN++S++ +L  C+ LS LQ GK++H 
Sbjct: 1012 LVTWNGMISGYAMWGCARKAFM-----------PNSASITCLLRACASLSLLQKGKEIHC 1060

Query: 223  LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            L  ++   +D    T LI MY K   L++A K+F  IQ K + +WN MI G+A  G G++
Sbjct: 1061 LSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKE 1120

Query: 283  ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
            A+ +F++M+  G+ PD+ITF ALL AC ++GL+  G +YFDSM+ DY I  + +HY CMV
Sbjct: 1121 AISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMV 1180

Query: 343  DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            DLLGRAG L EA DLI  MP KP   I+G LL +CR+HK L  AE AA NLF L P N+A
Sbjct: 1181 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSA 1240

Query: 403  GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
              Y+ + N+Y+   +W+D+  +R  M    V     +SWI++   VH F S ++ HP+  
Sbjct: 1241 N-YILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAG 1299

Query: 463  SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
             I+ +L +L   MK  GYVPD+      + E  K+++LL H+EKLAI +GLIK+  G PI
Sbjct: 1300 KIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPI 1359

Query: 523  RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            RV KN R+C DCH A KYIS ++ RE+ +RD  RFHHF++G CSC D+W
Sbjct: 1360 RVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 126/238 (52%), Gaps = 27/238 (11%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
            D +  N +IS + +   +  AR +F +M  +N+ SW++MIS Y   G L+ A  LF    
Sbjct: 809  DVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLF---- 864

Query: 129  VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                     + S  MK                 ++VTWN +++G+  + + E+ L +L+ 
Sbjct: 865  -------YELESSDMK----------------PDIVTWNCLLSGHFLHGYKEEVLNILQR 901

Query: 189  MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
            M G G +PN+SS++SVL   S L  L +GK+ H  V ++    D    T LI MY K   
Sbjct: 902  MQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHS 961

Query: 249  LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            L  A  +F  ++ +++  WN+++SGY+  G  E ALRL ++M+ EG+KPD +T+  ++
Sbjct: 962  LXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 1019



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 20/290 (6%)

Query: 32  KIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           K+PQ   PD  + N ++S  L   D   AA  F+  LP ++   WN+ +  F   K+ A 
Sbjct: 599 KLPQKWNPDAAAKN-LISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEEF---KSSAG 653

Query: 89  ARDLFLAMPEK--------NSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVAWT 136
           +  + L + ++        +S  +S  +        +   +E    L K      V    
Sbjct: 654 SLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRC 713

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+++ Y +   ++ A ++F EMP    + WN  I   +++   + G++L R M    ++ 
Sbjct: 714 ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKA 773

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
             +++  VL  C  + +L   KQ+H  VF+  L  D +   PLISMY K G LE A ++F
Sbjct: 774 ETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVF 833

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
             ++ ++  +WN+MIS YA  G    A  LF +++   MKPD +T+  LL
Sbjct: 834 DSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLL 883



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 17/298 (5%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGY------IEC 114
           LP+K +A       G V    M++A ++     L +   +  S  A+ +G         C
Sbjct: 535 LPLKSSAR-----IGAVSNTRMSRAMEVLIIKALVVDSPSRASTGAISAGVDVFRFNTTC 589

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G L   V +          A   +IS Y+ FG    A  +F     +N + WN+ +  + 
Sbjct: 590 GMLGALVMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFK 649

Query: 175 ENSWA-EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++ +    L++ + + G G+  ++   S  L  C+ +  + LG ++H  + K     D 
Sbjct: 650 SSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV 709

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L++ Y +C  LE A ++F E+   + + WN  I    Q  K +K + LF KM+  
Sbjct: 710 YLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFS 769

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            +K ++ T V +L AC   G ++   Q     V  +G+ +       ++ +  + GKL
Sbjct: 770 FLKAETATIVRVLQACGKMGALNAAKQ-IHGYVFRFGLDSDVSLCNPLISMYSKNGKL 826


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/519 (41%), Positives = 301/519 (57%), Gaps = 9/519 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC------ 114
            F  +  KD  S N MISGF        +  LF  +        S+ I G I        
Sbjct: 88  LFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGH 147

Query: 115 GQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             L   +  F  K+  V      TA+ + Y +  ++  A +LFDE   K L +WNAMI+G
Sbjct: 148 SYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISG 207

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
             +N   +  + L + M    + PN  +++S+L  C+ + +L LG+ VH L+  +    +
Sbjct: 208 CTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESN 267

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T LI MY KCG +  A +LF  +  K+ VTWNAMISGY  HG G++AL+LF  M  
Sbjct: 268 VYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLS 327

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             +KP  +TF+++L AC+HAGLV  G   F +MV+D+G     +HY CMVD+LGRAG+L 
Sbjct: 328 SSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLK 387

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           +A++ IK MP +P P ++G LL AC +HK  +LA  A+  LF L+P N  G YV ++NIY
Sbjct: 388 KALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPEN-IGYYVLMSNIY 446

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           +  +K+   A +R   K+  + K PG + IE+G V H F SGD+ HP+  +I+ +L +L 
Sbjct: 447 SVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLT 506

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            +M  AG+  +    LH + EE KE  +  HSEKLAIAFGLI    G  IR+ KNLRVC 
Sbjct: 507 GKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCL 566

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH  TK++S I KR I+VRD  RFHHFKDG CSCGDYW
Sbjct: 567 DCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 148/300 (49%), Gaps = 10/300 (3%)

Query: 76  MISGFVQKKNMAKARDLFLAM-----PEKNSVSWSAMISGYIECGQLDKAVELF----KV 126
           MISGFV+      +  +F  M     P  +  +  A++    E  +L   +++     K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                V   T +IS + K G+V++A  LF E+  K+L++ NAMI+G+  N   ED ++L 
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           + ++  G R ++S++  ++   S      L   +H    K  +   ++  T L ++YC+ 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            ++  A +LF E   K + +WNAMISG  Q+G  + A+ LF  M+   + P+ +T  ++L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC   G + LG ++  S++      +     T ++D+  + G +  A +L   MP K +
Sbjct: 241 SACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 22/282 (7%)

Query: 40  SYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK 99
           S +  L+ +    ++++ A   F     K  ASWN MISG  Q      A  LF  M + 
Sbjct: 168 SVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKN 227

Query: 100 ----NSVSWSAMISGYIECGQLDKAV---ELFKVAPVKS-VVAWTAMISGYMKFGKVDLA 151
               N V+ ++++S   + G L        L K    +S V   TA+I  Y K G + +A
Sbjct: 228 NVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVA 287

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            +LFD MP KN VTWNAMI+GY  +   ++ LKL   M+   ++P   +  SVL  CSH 
Sbjct: 288 RELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHA 347

Query: 212 SSLQLG-----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDV 264
             ++ G       VH   F+ PL +    +  ++    + G L+ A +    + ++    
Sbjct: 348 GLVKEGDGIFHTMVHDFGFE-PLAEHYACMVDILG---RAGQLKKALEFIKAMPVEPGPP 403

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           V W A++     H     A    +K+ +  + P++I +  L+
Sbjct: 404 V-WGALLGACMIHKDTNLAHVASEKLFE--LDPENIGYYVLM 442



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++ V  ++ L     + G +  A+ELFD +P+ + V++N M+S   L+     A   F+ 
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYD 324

Query: 64  RLPIKDTASWNTMISGF--VQKKNMAKARD-LFLAMP-----EKNSVSWSAMISGYIECG 115
            L      +  T +S         + K  D +F  M      E  +  ++ M+      G
Sbjct: 325 MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAG 384

Query: 116 QLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLA----EKLFDEMP 159
           QL KA+E  K  PV+     W A++   M     +LA    EKLF+  P
Sbjct: 385 QLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDP 433


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/475 (43%), Positives = 293/475 (61%), Gaps = 2/475 (0%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           E +S   S++I  Y     L  A +LF +   + VV+W AMI GY+K  ++  A  +FD 
Sbjct: 198 ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDR 257

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M  +++++WN MI GY       + L L   M  +G++P  +++ S+L  C+HL +L  G
Sbjct: 258 MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 317

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
             +H  +  + +  ++   T L+ MY KCG +  A ++F  ++ KDV+ WN +I+G A H
Sbjct: 318 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 377

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G  ++A +LF +MK+ G++P+ ITFVA+L AC+HAG+VD G +  D M + YGI  K +H
Sbjct: 378 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 437

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y C++DLL RAG L EA++LI  MP +P P+  G LL  CR+H   +L E     L NL 
Sbjct: 438 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 497

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           P + +G Y+ L+NIYAA KKWDD  ++R  MK N + K+PG S IE+  +VH F +GD  
Sbjct: 498 PCH-SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWS 556

Query: 458 HPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
           HPE   I+EKL E+  R+K A GY  D    L  + EE KE  L  HSEKLAIA+GL+ +
Sbjct: 557 HPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHL 616

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
                IR+ KNLRVC DCH   K IS +  REIIVRD  RFHHF+DG CSC D+W
Sbjct: 617 DSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 119/268 (44%), Gaps = 33/268 (12%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+ +F  +       +N++I     +    + L L   M+  G++P+  +   V+  C+ 
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            S    G  VH  V KS    D+  ++ LI +Y    DL  A +LF     +DVV+WNAM
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 271 ISGYAQH-------------------------------GKGEKALRLFDKMKDEGMKPDS 299
           I GY +H                               GK  +AL LFD+M+  G+KP  
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            T V+LL AC H G +D G+ +  + +ND  I       T +VD+  + GK+  A  +  
Sbjct: 299 ATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 357

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAE 387
            M  K   A + T+++   +H  +  A+
Sbjct: 358 AMESKDVLA-WNTIIAGMAIHGNVKEAQ 384



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 77/326 (23%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           N  D+ AA   F     +D  SWN MI G+V+   M  AR +F  M  ++ +SW+ MI+G
Sbjct: 213 NGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMING 272

Query: 111 YIECGQLDKAVELFK------VAPVKSVV------------------------------- 133
           Y  CG+ ++A+ LF       V P ++ V                               
Sbjct: 273 YAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 332

Query: 134 --AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
               TA++  Y K GK+ LA ++F+ M +K+++ WN +IAG   +   ++  +L + M  
Sbjct: 333 SIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 392

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G+ PN  +  ++L  CSH   +  G+++   +  S        + P +  Y        
Sbjct: 393 AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS------YGIEPKVEHY-------- 438

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
                             +I   A+ G  E+A+ L   M    M+P+     ALL  C  
Sbjct: 439 ----------------GCVIDLLARAGFLEEAMELIGTMP---MEPNPSALGALLGGCRI 479

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDH 337
            G  +LG      MV    I  +P H
Sbjct: 480 HGNFELG-----EMVGKRLINLQPCH 500



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 136/298 (45%), Gaps = 46/298 (15%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF 59
           + +  V+WN+++ G+ K   ++  A+ +FD++   DV+S+N M++   I    ++ +A F
Sbjct: 228 SARDVVSWNAMIDGYVKHV-EMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALF 286

Query: 60  DFFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC 114
           D  + + +K T A+  +++S       + K   L   +     E NS+  +A++  Y +C
Sbjct: 287 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 346

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMI 170
           G++  A ++F     K V+AW  +I+G    G V  A++LF EM       N +T+ A++
Sbjct: 347 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 406

Query: 171 AGYVENSWAEDGLKLLRMM--------------------------------IG-LGIRPN 197
           +        ++G KLL  M                                IG + + PN
Sbjct: 407 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPN 466

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            S+L ++L GC    + +LG+ V + +     C     +  L ++Y      +DA K+
Sbjct: 467 PSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYIL-LSNIYAAAKKWDDARKV 523


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 327/564 (57%), Gaps = 46/564 (8%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD-------LFLAMP-------- 97
           +D+  A   F+ +P++D  SWN++ISG+       +A +       LF+ M         
Sbjct: 164 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLL 223

Query: 98  ------------------------------EKNSVSWSAMISGYIECGQLDKAVELFKVA 127
                                         E ++ + + +I+ Y +CG L  + E+F   
Sbjct: 224 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 283

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             K  V+W +MI+ Y++ GK+  + K+F+ M  ++++TWN +IA  V +     GL+++ 
Sbjct: 284 KCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 343

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G+ P+ +++ S+L  CS L++ + GK++H  +FK  L  D      LI MY KCG
Sbjct: 344 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 403

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L ++ ++F  ++ KDVVTW A+IS    +G+G+KA+R F +M+  G+ PD + FVA++ 
Sbjct: 404 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 463

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+H+GLV+ G+ YF  M  DY I  + +HY C+VDLL R+  L +A D I  MP KP  
Sbjct: 464 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 523

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
           +I+G LLSACR+    ++AE  +  +  LNP +  G YV ++NIYAA+ KWD V  IR S
Sbjct: 524 SIWGALLSACRMSGDTEIAERVSERIIELNP-DDTGYYVLVSNIYAALGKWDQVRSIRKS 582

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           +K   + K PG SW+E+   V+ F +G +   +   +++ L  L   M   GY+ +L+F 
Sbjct: 583 IKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFV 642

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH + E+ K  +L  HSE+LAIAFGL+    GTP++V KNLRVC DCH  TKYIS I +R
Sbjct: 643 LHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQR 702

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           E++VRD  RFH FKDG CSCGDYW
Sbjct: 703 ELLVRDANRFHVFKDGACSCGDYW 726



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 13/210 (6%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL--- 192
            A+I  Y +F  +D A K+F+EMP +++V+WN++I+GY  N +  + L++    I L   
Sbjct: 154 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFME 213

Query: 193 ---GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                +P+  +++S+L  C HL  L+ GK VH  +  S    DTTA   LI+MY KCG+L
Sbjct: 214 MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 273

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             + ++F  ++ KD V+WN+MI+ Y Q+GK   +L++F+ MK      D IT+  ++ +C
Sbjct: 274 LASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKAR----DIITWNTIIASC 329

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
            H+   +LG++    M  +      PD  T
Sbjct: 330 VHSEDCNLGLRMISRMRTE---GVTPDMAT 356



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           SV+    +I+ Y  F     +  +F    P+ N+  WN++I     N    + L L    
Sbjct: 47  SVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSET 106

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             + ++P+  +  SV+  C+ L   ++ K +H  V       D      LI MYC+  DL
Sbjct: 107 QRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDL 166

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL-------RLFDKMKDEGMKPDSITF 302
           + A K+F E+  +DVV+WN++ISGY  +G   +AL       +LF +M ++  KPD +T 
Sbjct: 167 DKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTI 225

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            ++L AC H G ++ G    D M+   G          ++++  + G L+ + ++   M 
Sbjct: 226 TSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMK 284

Query: 363 FK 364
            K
Sbjct: 285 CK 286



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 23/315 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAF 59
           M  K +V+WNS++  +  Q GK+ D+ ++F+ +   D++++N I+ SC+  +S+D     
Sbjct: 283 MKCKDSVSWNSMINVYI-QNGKMGDSLKVFENMKARDIITWNTIIASCV--HSEDCNLGL 339

Query: 60  DFFQRLPIKD-TASWNTMISGFVQKKNMAKARD-------LFLAMPEKNSVSWSAMISGY 111
               R+  +  T    TM+S       +A  R        +F    E +    + +I  Y
Sbjct: 340 RMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMY 399

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWN 167
            +CG L  + ++FK+   K VV WTA+IS    +G+   A + F EM    +    V + 
Sbjct: 400 SKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFV 459

Query: 168 AMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           A+I     +   E+GL    RM     I P     + V+     LS   L  +    +  
Sbjct: 460 AIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVV---DLLSRSALLDKAEDFILS 516

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKL---FLEIQRKDVVTWNAMISGYAQHGKGEKA 283
            PL  D++    L+S     GD E A ++    +E+   D   +  + + YA  GK ++ 
Sbjct: 517 MPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQV 576

Query: 284 LRLFDKMKDEGMKPD 298
             +   +K  G+K D
Sbjct: 577 RSIRKSIKARGLKKD 591



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 131/313 (41%), Gaps = 44/313 (14%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + D  + NI+++ +     +++A+ + F  +  KD+ SWN+MI+ ++Q   M  +  +F 
Sbjct: 254 ECDTTASNILIN-MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFE 312

Query: 95  AMPEKNSVSWSAMISGYI---EC-------------GQLDKAVELFKVAPVKSVVA---- 134
            M  ++ ++W+ +I+  +   +C             G       +  + PV S++A    
Sbjct: 313 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 372

Query: 135 -------------------WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                                 +I  Y K G +  + ++F  M TK++VTW A+I+    
Sbjct: 373 GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGM 432

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTT 234
               +  ++    M   GI P+  +  +++  CSH   ++ G    H++     +     
Sbjct: 433 YGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIE 492

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
               ++ +  +   L+ A    L +  K D   W A++S     G  E A R+ +++ + 
Sbjct: 493 HYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE- 551

Query: 294 GMKPDSITFVALL 306
            + PD   +  L+
Sbjct: 552 -LNPDDTGYYVLV 563


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/473 (42%), Positives = 296/473 (62%), Gaps = 2/473 (0%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           N  ++S +++        +   +  K   VKS    TA++  Y+K G VD A K+F  + 
Sbjct: 9   NDFTYSTILTAQPGVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIE 68

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGK 218
            K++V W+AMI GY +    E  +++   M    I+PN  + S ++  C+   + ++ GK
Sbjct: 69  EKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGK 128

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H    KS         + L++MY K GD+E A ++F   + +D+V+WN++ISGYAQHG
Sbjct: 129 QLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHG 188

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
            G KAL +F++M+ + ++ D +TF+ ++ AC H GL + G +YFD MV D+ I  + +HY
Sbjct: 189 YGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHY 248

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
           +CMVDL GRAG LV+A+++I +MPF     ++ TLL+A  +H+ L++ + AA  L +L P
Sbjct: 249 SCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQP 308

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
            N A  YV L N+YA++  W + A++R  M+E  V K+ GYSWIEV    + F +GD  H
Sbjct: 309 QNPAS-YVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSH 367

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           P    I+ KL+EL  ++K AGY PD  +    V EE KE +L  HSE+LAIAFGLI  P 
Sbjct: 368 PLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFGLIGTPP 427

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GTP+++ KNLRVCGDCH   K IS +E R+I+VRD+ RFHHFK G CSCGDYW
Sbjct: 428 GTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 101/219 (46%), Gaps = 16/219 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           +V  A   FQR+  KD  +W+ MI G+ Q  +   A  +F+ M ++    N  ++S +I+
Sbjct: 56  NVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIIN 115

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAW--------TAMISGYMKFGKVDLAEKLFDEMPTK 161
               C      VE  K     S+ +         +A+++ Y K G ++ A ++F     +
Sbjct: 116 A---CAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRER 172

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           +LV+WN++I+GY ++ +    L++   M    +  +  +   V+  C+H      G++  
Sbjct: 173 DLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYF 232

Query: 222 QLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLEI 259
            ++ K    +      + ++ +Y + G L  A ++  E+
Sbjct: 233 DIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEM 271



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 17/202 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK+     ++L  + K RG + +A ++F +I + D+V+++ M+ C      D   A   F
Sbjct: 38  VKSPSVGTALLDAYVK-RGNVDEASKVFQRIEEKDIVAWSAMI-CGYAQIGDTEGAVRIF 95

Query: 63  QRLPIKDTASWNTMISGF----------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            ++  +         SG           V++     A  +         VS SA+++ Y 
Sbjct: 96  VQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVS-SALLTMYS 154

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNA 168
           + G ++ A E+FK    + +V+W ++ISGY + G    A ++F+EM  +NL    VT+  
Sbjct: 155 KRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIG 214

Query: 169 MIAGYVENSWAEDGLKLLRMMI 190
           +I+       A +G +   +M+
Sbjct: 215 VISACTHTGLANEGQRYFDIMV 236



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMIS 109
           D+ +AF+ F+R   +D  SWN++ISG+ Q     KA ++F  M  +N     V++  +IS
Sbjct: 158 DIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVIS 217

Query: 110 GYIECGQLDKAVELFKVAPVKSVVA-----WTAMISGYMKFGKVDLAEKLFDEMP-TKNL 163
                G  ++    F +      +      ++ M+  Y + G +  A ++ +EMP   + 
Sbjct: 218 ACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASA 277

Query: 164 VTWNAMIA 171
             W  ++A
Sbjct: 278 NVWRTLLA 285



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 132/291 (45%), Gaps = 30/291 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V W++++ G+A Q G  + A  +F ++ +  +       S I+       A  +  +
Sbjct: 70  KDIVAWSAMICGYA-QIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGK 128

Query: 64  RLPIKDTASW--------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           +L      S         + +++ + ++ ++  A ++F    E++ VSW+++ISGY + G
Sbjct: 129 QLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHG 188

Query: 116 QLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT-----W 166
              KA+E+F+    +++    V +  +IS     G  +  ++ FD M   + +      +
Sbjct: 189 YGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHY 248

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGK-QVHQLV 224
           + M+  Y         ++++  M      P ++++   LL  S +  +L++GK    +L+
Sbjct: 249 SCMVDLYGRAGMLVKAMEIINEM----PFPASANVWRTLLAASCIHRNLEVGKLAADKLI 304

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
              P  ++  +   L +MY   G+ ++  K+   ++ K V      ++GY+
Sbjct: 305 SLQP--QNPASYVLLTNMYASVGNWKERAKVRKLMEEKKV----KKVAGYS 349


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/651 (38%), Positives = 358/651 (54%), Gaps = 92/651 (14%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC-------------------- 47
           ++N+++  +AK    +  A+ +FD+IPQPD+VSYN +++                     
Sbjct: 77  SYNTLINAYAKH-SLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVREL 135

Query: 48  ------------ILLNSDDV--VAAFDFFQRLPIKDTASW--NTMISGFVQKKNMAKARD 91
                       I    DDV  V     F  +   D  +   N +++ + +K  +++AR 
Sbjct: 136 RLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARR 195

Query: 92  LFLAMPE---KNSVSWSAMISGYIECGQLDKAVE----------------LFKVAPVKSV 132
           +F  M E   ++ VSW+AMI   + CGQ  + +E                +F +A V + 
Sbjct: 196 VFREMGEGGGRDEVSWNAMI---VACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTA 252

Query: 133 VAWTAMISGYMKF-----------------GKVDL----------AEKLFDEMPTKNLVT 165
                 + G  +F                 G +DL            K+F+E+   +LV 
Sbjct: 253 FTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVL 312

Query: 166 WNAMIAGY-VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           WN MI+G+ +    +EDGL   R M   G RP+  S   V   CS+LSS  LGKQVH L 
Sbjct: 313 WNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALA 372

Query: 225 FKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
            KS +  +  ++   L++MY KCG++ DA ++F  +   + V+ N+MI+GYAQHG   ++
Sbjct: 373 IKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVES 432

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           LRLF+ M ++ + P+SITF+A+L AC H G V+ G +YF+ M   + I  + +HY+CM+D
Sbjct: 433 LRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMID 492

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAGKL EA  +I+ MPF P    + TLL ACR H  ++LA  AA     L P NAA 
Sbjct: 493 LLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAP 552

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            YV L+N+YA+  +W++ A ++  M+E  V K PG SWIE+   VH F + D  HP +  
Sbjct: 553 -YVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKE 611

Query: 464 IHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
           IH  + ++ K+MK AGYVPD+ +AL     V  + +E+ LL+HSEKLA+AFGLI    G 
Sbjct: 612 IHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGV 671

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PI V KNLR+CGDCH A K ISA+  REI VRDT RFH FK+G CSC DYW
Sbjct: 672 PILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +CG L  A   F +    +V ++  +I+ Y K   + +A ++FDE+P  ++V++N +I
Sbjct: 54  YSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLI 113

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A Y +       L+L   +  L +  +  +LS V+  C     + L +Q+H  V      
Sbjct: 114 AAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHD 171

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLF 287
              +    +++ Y + G L +A ++F E+     +D V+WNAMI    QH +G +A+ LF
Sbjct: 172 CYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLF 231

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDL-GIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            +M   G+K D  T  ++L A     + DL G + F  M+   G        + ++DL  
Sbjct: 232 REMVRRGLKVDMFTMASVLTA--FTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYS 289

Query: 347 R-AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           + AG +VE   + +++   P   ++ T++S   +++  DL+E
Sbjct: 290 KCAGSMVECRKVFEEIT-APDLVLWNTMISGFSLYE--DLSE 328



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +  ++L  C     L  GK +H L FKS +   T        +Y KCG L +A   F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           Q  +V ++N +I+ YA+H     A R+FD++     +PD +++  L+ A    G     +
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAAYADRGECGPTL 126

Query: 320 QYFDSM 325
           + F+ +
Sbjct: 127 RLFEEV 132



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 29/233 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+ N+ L     + G + DA+ +FD +P+ + VS N M++    +  + V +   F+ + 
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVE-VESLRLFELML 440

Query: 67  IKDTA----SWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQL 117
            KD A    ++  ++S  V    + + +  F  M E+  +      +S MI      G+L
Sbjct: 441 EKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKL 500

Query: 118 DKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
            +A  + +  P     + W  ++    K G V+LA K  +E     L  +NA     + N
Sbjct: 501 KEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEF--LRLEPYNAAPYVMLSN 558

Query: 177 SWA-----EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            +A     E+   + R+M   G++           GCS    +++ K+VH  V
Sbjct: 559 MYASAARWEEAATVKRLMRERGVKKKP--------GCSW---IEIDKKVHVFV 600


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/585 (39%), Positives = 349/585 (59%), Gaps = 25/585 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI 67
           N+V+  +AK  G +++A ++F+++   DVVS+N M++    +   DD +  F+  +   I
Sbjct: 289 NAVVDMYAKC-GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 347

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVE 122
           + +  +W+ +I+G+ Q+    +A D+F  M     E N V+  +++SG    G L    E
Sbjct: 348 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKE 407

Query: 123 -----------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAM 169
                      L +  P   ++   A+I  Y K      A  +FD +P K+  +VTW  +
Sbjct: 408 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467

Query: 170 IAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           I G  ++  A + L+L   M+     + PNA ++S  L+ C+ L +L+ G+Q+H  V ++
Sbjct: 468 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527

Query: 228 PLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                   +   LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+GE+AL++
Sbjct: 528 RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQI 587

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+   + PD +TFV +L AC+H+G+VD GI YF+ M  D+G+    +HY CMVDLL 
Sbjct: 588 FYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLS 647

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG+L EA++LI+ MP KP PA++  LLSACRV+  ++L E+AA  L  L   N  G Y 
Sbjct: 648 RAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGND-GSYT 706

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+NIYA  + W DVARIR  MK   + K PG SW++       F +GD  HP    I++
Sbjct: 707 LLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYD 766

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            L++L +R+K  GYVPD  FALH V +E K  LL  HSEKLA+A+G++    G PIR+ K
Sbjct: 767 LLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITK 826

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR CGDCH A  YIS I + EIIVRD++RFHHFK+G+CSC  YW
Sbjct: 827 NLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 127/219 (57%), Gaps = 5/219 (2%)

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNA 168
             CG    AV +F      +V     ++S Y + G  + A ++FDEM  +   +LV+WN+
Sbjct: 161 FRCGASVHAV-VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 219

Query: 169 MIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           ++A Y++   +   +K+  RM   LGIRP+A SL +VL  C+ + +   GKQVH    +S
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L +D      ++ MY KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G+ + AL LF
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +K+++E ++ + +T+ A++      GL    +  F  M+
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQML 378



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 56/379 (14%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIE 113
           FD  +   + D  SWN++++ ++Q  +  +A  +F  M E      ++VS   ++     
Sbjct: 203 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 262

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G   +  ++     +    + V    A++  Y K G ++ A K+F+ M  K++V+WNAM
Sbjct: 263 VGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAM 322

Query: 170 -----------------------------------IAGYVENSWAEDGLKLLRMMIGLGI 194
                                              IAGY +     + L + R M+  G 
Sbjct: 323 VTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGS 382

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCG 247
            PN  +L S+L GC+   +L  GK+ H    K  L         D   +  LI MY KC 
Sbjct: 383 EPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCK 442

Query: 248 DLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFV 303
             + A  +F  I  KD  VVTW  +I G AQHG+  +AL LF +M   D  + P++ T  
Sbjct: 443 SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 502

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
             L+AC   G +  G Q    ++ +   +A      C++D+  ++G  V+A  ++     
Sbjct: 503 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD-VDAARVVFDNMH 561

Query: 364 KPQPAIFGTLLSACRVHKR 382
           +     + +L++   +H R
Sbjct: 562 QRNGVSWTSLMTGYGMHGR 580



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEM-PTKNLVTW-NAMIAGYVENSWAEDGLKLLRMMIGLG 193
           T +IS Y+ F     A  +   + P+ + V W N +I   V   + ED L+L R M  LG
Sbjct: 81  THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 140

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
            RP+  +   VL  C  + S + G  VH +VF S    +      L+SMY +CG  E+A 
Sbjct: 141 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 200

Query: 254 KLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLAC 309
           ++F E++ +   D+V+WN++++ Y Q G   +A+++F++M +D G++PD+++ V +L AC
Sbjct: 201 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 260

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAK--PDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 364
              G    G Q     V+ Y + +    D +    +VD+  + G + EA  + ++M  K
Sbjct: 261 ASVGAWSRGKQ-----VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 92/372 (24%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLS------CILLNSDD 54
             V W++V+AG+A QRG   +A ++F ++     +P+VV+   +LS       +L   + 
Sbjct: 350 NVVTWSAVIAGYA-QRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 55  VVAAFDFFQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS--VSWSAMI 108
              A  +   L    P  D    N +I  + + K+   AR +F  +P K+   V+W+ +I
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 109 SGYIECGQLDKAVELFK--------VAPVKSVVAWTAM---------------------- 138
            G  + G+ ++A+ELF         V P    ++   M                      
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 528

Query: 139 ------------ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                       I  Y K G VD A  +FD M  +N V+W +++ GY  +   E+ L++ 
Sbjct: 529 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 588

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M  + + P+  +   VL  CSH   +  G     + + + + KD   + P    Y   
Sbjct: 589 YEMQKVXLVPDGVTFVVVLYACSHSGMVDQG-----INYFNGMNKD-FGVVPGAEHY--- 639

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
                AC                M+   ++ G+ ++A+ L   M    MKP    +VALL
Sbjct: 640 -----AC----------------MVDLLSRAGRLDEAMELIRGMP---MKPTPAVWVALL 675

Query: 307 LACNHAGLVDLG 318
            AC     V+LG
Sbjct: 676 SACRVYANVELG 687


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/452 (45%), Positives = 287/452 (63%), Gaps = 3/452 (0%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ K    +S    TA++  Y+K GKV+ A K+F  +  K++V W+AM+AGY +    E 
Sbjct: 22  QVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEA 81

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            +K+   +   GI+PN  + SS+L  C+   +S+  GKQ H    KS L       + L+
Sbjct: 82  AIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALL 141

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY K G++E A ++F   + KD+V+WN+MISGYAQHG+  KAL +F +MK   +K D +
Sbjct: 142 TMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGV 201

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +  AC HAGLV+ G +YFD MV D  IA   +H +CMVDL  RAG+L +A+ +I+ 
Sbjct: 202 TFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIEN 261

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP      I+ T+L+ACRVHK+ +L   AA  +  + P ++A  YV L+N+YA    W +
Sbjct: 262 MPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA-YVLLSNMYAESGDWQE 320

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
            A++R  M E NV K PGYSWIEV    + F +GDR HP    I+ KL++L  R+K  GY
Sbjct: 321 RAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGY 380

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
            PD  + L  + +E KE +L  HSE+LAIAFGLI  P G+P+ + KNLRVCGDCH   K 
Sbjct: 381 EPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKL 440

Query: 541 ISAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 571
           I+ IE+REI+VRD+ RFHHF  DG CSCGD+W
Sbjct: 441 IAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           +VH  V K+   + +T  T L+  Y K G +E+A K+F  I  KD+V W+AM++GYAQ G
Sbjct: 18  EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 77

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           + E A+++F ++   G+KP+  TF ++L  C
Sbjct: 78  ETEAAIKMFGELTKGGIKPNEFTFSSILNVC 108



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 121/275 (44%), Gaps = 45/275 (16%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL---------- 123
             ++  +V+   + +A  +F  + +K+ V+WSAM++GY + G+ + A+++          
Sbjct: 36  TALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIK 95

Query: 124 ---FKVAPVKSVVAWT---------------------------AMISGYMKFGKVDLAEK 153
              F  + + +V A T                           A+++ Y K G ++ AE+
Sbjct: 96  PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE 155

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F     K+LV+WN+MI+GY ++  A   L + + M    ++ +  +   V   C+H   
Sbjct: 156 VFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGL 215

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMI 271
           ++ G++   ++ +      T      ++ +Y + G LE A K+   +      T W  ++
Sbjct: 216 VEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTIL 275

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 305
           +    H K E      +K+    MKP DS  +V L
Sbjct: 276 AACRVHKKTELGRLAAEKII--AMKPEDSAAYVLL 308



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 153/337 (45%), Gaps = 54/337 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
           K  V W+++LAG+A Q G+ + A ++F ++ +  +       S IL    +V AA +   
Sbjct: 61  KDIVAWSAMLAGYA-QTGETEAAIKMFGELTKGGIKPNEFTFSSIL----NVCAATNASM 115

Query: 62  -----FQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                F    IK     +  +S      + +K N+  A ++F    EK+ VSW++MISGY
Sbjct: 116 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 175

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEM-------PT 160
            + GQ  KA+++FK    + V    V +  + +     G V+  EK FD M       PT
Sbjct: 176 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 235

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLLGCSHLSSLQLGK- 218
           K   +   M+  Y      E  +K++  M      P  S++  ++L  C      +LG+ 
Sbjct: 236 KEHNS--CMVDLYSRAGQLEKAMKVIENMPN----PAGSTIWRTILAACRVHKKTELGRL 289

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----VTW------ 267
              +++   P  +D+ A   L +MY + GD ++  K+   +  ++V      +W      
Sbjct: 290 AAEKIIAMKP--EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNK 347

Query: 268 -NAMISGYAQHG-KGEKALRLFD---KMKDEGMKPDS 299
             + ++G   H  K +  ++L D   ++KD G +PD+
Sbjct: 348 TYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDT 384


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 324/560 (57%), Gaps = 44/560 (7%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS----- 103
           V  A   F  L ++D  SW ++ S +V+     K  D+F  M      P   +VS     
Sbjct: 215 VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPA 274

Query: 104 ----------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                        SA++S Y +C  + +A  +F + P + VV+W
Sbjct: 275 CAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSW 334

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLRMMIG 191
             +++ Y K  + +    LF +M    +     TWNA+I G +EN  +E+ +++ R M  
Sbjct: 335 NGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 394

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           +G +PN  ++SS+L  CS   +L++GK++H  VF+     D T+ T L+ MY KCGDL  
Sbjct: 395 MGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNL 454

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           +  +F  ++RKDVV WN MI   A HG G++AL LFDKM    ++P+S+TF  +L  C+H
Sbjct: 455 SRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSH 514

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           + LV+ G+Q F+SM  D+ +    +HY+C+VD+  RAG+L EA   I+ MP +P  + +G
Sbjct: 515 SRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWG 574

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL+ACRV+K ++LA+ +A  LF + P N  G YV L NI    K W + +++R+ MKE 
Sbjct: 575 ALLAACRVYKNVELAKISAKKLFEIEP-NNPGNYVSLFNILVTAKMWSEASQVRILMKER 633

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PG SW++VG  VH F  GD+ + E   I+  L EL ++MK+AGY PD ++ L  +
Sbjct: 634 GITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDI 693

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +E K + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A KY+S +    I+V
Sbjct: 694 DQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVV 753

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD+ RFHHFK+G CSC D W
Sbjct: 754 RDSLRFHHFKNGNCSCKDLW 773



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 51/232 (21%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMIS 78
           +++A+ +FD +P  DVVS+N +L+    N +     F  F ++       D A+WN +I 
Sbjct: 316 VREARMVFDLMPHRDVVSWNGVLTAYFKNKE-YEKGFSLFLKMSRDGVRADEATWNAVIG 374

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSVS-------------------------W--- 104
           G ++     +A ++F  M      P + ++S                         W   
Sbjct: 375 GCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVG 434

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM- 158
                +A++  Y +CG L+ +  +F +   K VVAW  MI      G    A  LFD+M 
Sbjct: 435 DLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKML 494

Query: 159 ---PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVL 205
                 N VT+  +++G   +   E+G+++   M G    + P+A+  S V+
Sbjct: 495 LSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSM-GRDHLVEPDANHYSCVV 545



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI +    GD   A +LF  I + D  T + +IS    HG   +A++++  +++ G+KPD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 299 SITFVALLLACNHAG 313
              F+A   AC  +G
Sbjct: 164 MPVFLAAAKACAVSG 178


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/522 (41%), Positives = 307/522 (58%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F R+P +D  +W+TM++GFV       A  ++  M E        ++ G I+    
Sbjct: 162 AVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            + V         L +      VV  T+++  Y K G +D+A ++F  M  +N V+W+AM
Sbjct: 222 ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM 281

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+G+ +N  +++ L+L R M   GI+P++ +L S LL CS++  L+LG+ VH  + +   
Sbjct: 282 ISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-F 340

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             +    T  I MY KCG L  A  LF  I  +D++ WNAMI+    HG+G+ AL LF +
Sbjct: 341 DFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQE 400

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M + GM+PD  TF +LL A +H+GLV+ G  +F  MVN + I     HY C+VDLL R+G
Sbjct: 401 MNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSG 460

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            + EA DL+  M  +P  AI+  LLS C  +K+L+L E  A N+  L P +  G    ++
Sbjct: 461 LVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDV-GVLALVS 519

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YAA KKWD V ++R  MK++   KMPG S IE+    H F   D+ HP+   I  K+ 
Sbjct: 520 NLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVA 579

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L+  M+  GY+P  EF  H + EEVKEQ L +HSE+LAIAFGL+    GT + + KNLR
Sbjct: 580 KLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLR 639

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A KYIS I  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 640 VCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 189/398 (47%), Gaps = 46/398 (11%)

Query: 82  QKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVA 134
           ++ + A A  +F A+P     +S +++  +S     G L     +    F       V  
Sbjct: 86  RRGSPASALRVFRALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFV 145

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            ++++  Y ++G +  A K+F  MP ++ VTW+ M+AG+V      D +++ R M   G+
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV 205

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +   +  V+  C+   ++++G  VH  + +  +  D    T L+ MY K G L+ AC+
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 255 LF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +F L + R DV +W+AMISG+AQ+G+ ++ALRLF  M+  G++PDS   V+ LLAC++ G
Sbjct: 266 VFGLMVHRNDV-SWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 314 LVDLGIQYFDSMVNDY------GIAAKPDHYTC-----------------------MVDL 344
            + LG      +V  +      G AA   +  C                       M+  
Sbjct: 325 FLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIAC 384

Query: 345 LGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE--FAAM-NLFNLNP 398
            G  G+  +A+ L ++M     +P  A F +LLSA      ++  +  F  M N F + P
Sbjct: 385 CGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITP 444

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           A     YV L ++ A     ++ + +  SMK    V +
Sbjct: 445 AEKH--YVCLVDLLARSGLVEEASDLLTSMKAEPTVAI 480



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA-CKLFLEIQRKDVVTWNAMISGYAQH 277
           ++H L+  S     T  ++ L + Y + GDL  A   L        +  WNA+I+ +++ 
Sbjct: 29  RLHALLIVSSSASHTL-ISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRR 87

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G    ALR+F  +     +PDS TF   L AC   G +  G    D     +    K D 
Sbjct: 88  GSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRD---RAFDAGYKDDV 143

Query: 338 YTC--MVDLLGRAGKLVEAVDLIKKMPFK 364
           + C  ++ L  R G + +AV +  +MP +
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRR 172


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 324/559 (57%), Gaps = 12/559 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWNTMISGF 80
           L  A ++ D+  +P + + N M+      S     +FDF++R+     D    N  ++  
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRA-HCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFL 114

Query: 81  VQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           VQ     + R+  L +         + +    + +IS Y E G LD   ++F   P    
Sbjct: 115 VQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDF 174

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V  TAM++   + G V  A KLF+ MP ++ + WNAMI+GY +   + + L +  +M   
Sbjct: 175 VCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G++ N  ++ SVL  C+ L +L  G+  H  + ++ +       T L+ +Y KCGD+E A
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKA 294

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F  ++ K+V TW++ ++G A +G GEK L LF  MK +G+ P+++TFV++L  C+  
Sbjct: 295 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVV 354

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           G VD G ++FDSM N++GI  + +HY C+VDL  RAG+L +AV +I++MP KP  A++ +
Sbjct: 355 GFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSS 414

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL A R++K L+L   A+  +  L  AN  G YV L+NIYA    WD+V+ +R SMK   
Sbjct: 415 LLHASRMYKNLELGVLASKKMLELETAN-HGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K PG S +EV   VHEF  GD+ HP+   I    K++ +R++LAGY  D    +  + 
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE KE  L  HSEK AIAFG++ +    PIR+ KNLRVCGDCH+ +  IS I  REIIVR
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHFKDG CSC  +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 146/325 (44%), Gaps = 38/325 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L    ++F+ IP PD V    M++       DVV A   F+ +P +D  +WN MISG+
Sbjct: 157 GCLDSCHKVFNSIPCPDFVCRTAMVTAC-ARCGDVVFARKLFEGMPERDPIAWNAMISGY 215

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK---AVELFKVAPVK-SV 132
            Q     +A ++F  M     + N V+  +++S   + G LD+   A    +   +K +V
Sbjct: 216 AQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITV 275

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              T ++  Y K G ++ A ++F  M  KN+ TW++ + G   N + E  L+L  +M   
Sbjct: 276 RLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQD 335

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCK 245
           G+ PNA +  SVL GCS +  +  G    Q  F S   ++   + P       L+ +Y +
Sbjct: 336 GVTPNAVTFVSVLRGCSVVGFVDEG----QRHFDS--MRNEFGIEPQLEHYGCLVDLYAR 389

Query: 246 CGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            G LEDA  +  ++  K     W++++     +   E  +    KM +            
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE------------ 437

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDY 329
            L   NH   V L   Y DS  ND+
Sbjct: 438 -LETANHGAYVLLSNIYADS--NDW 459


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 344/575 (59%), Gaps = 17/575 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDVVAAFDFFQR 64
           N+++  + K +  ++ A+ +FD +   DVVS+  + SC +         DV     +   
Sbjct: 117 NALIHAYGKCKC-VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGV 175

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLF-LAMPEKNSVSW---SAMISGYIECGQLDKA 120
            P   T S  +++    + K++   +++   A+     V+    SA++S Y +C  + +A
Sbjct: 176 KPNPMTVS--SILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREA 233

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVEN 176
             +F + P + VV+W  +++ Y K  + +    LF +M    +     TWNA+I G +EN
Sbjct: 234 RMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMEN 293

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
             +E+ +++ R M  +G +PN  ++SS+L  CS   +L++GK++H  VF+     D T+ 
Sbjct: 294 GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTST 353

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           T L+ MY KCGDL  +  +F  ++RKDVV WN MI   A HG G++AL LFDKM    ++
Sbjct: 354 TALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQ 413

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           P+S+TF  +L  C+H+ LV+ G+Q F+SM  D+ +    +HY+C+VD+  RAG+L EA  
Sbjct: 414 PNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYK 473

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            I+ MP +P  + +G LL+ACRV+K ++LA+ +A  LF + P N  G YV L NI    K
Sbjct: 474 FIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEP-NNPGNYVSLFNILVTAK 532

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
            W + +++R+ MKE  + K PG SW++VG  VH F  GD+ + E   I+  L EL ++MK
Sbjct: 533 MWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMK 592

Query: 477 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
           +AGY PD ++ L  + +E K + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH 
Sbjct: 593 MAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHN 652

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A KY+S +    I+VRD+ RFHHFK+G CSC D W
Sbjct: 653 AIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI +    GD   A +LF  I + D  T + +IS    HG   +A++++  +++ G+KPD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 299 SITFVALLLACNHAG 313
              F+A   AC  +G
Sbjct: 78  MPVFLAAAKACAVSG 92


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/570 (38%), Positives = 327/570 (57%), Gaps = 11/570 (1%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L  +A   G L  A+ LF+ I + +V+S+NI++   + N D + +A + F ++P ++
Sbjct: 81  NNLLLAYADL-GDLPTARHLFEGISKRNVMSWNILIGGCIKNGD-LGSARELFDKMPTRN 138

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC--GQLD----KAVEL 123
            A+WN M++G         +   FLAM  +        +     C  G LD    + V  
Sbjct: 139 VATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHA 198

Query: 124 FKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           + V       +    ++   YM+ G +   E +   +P+  +V++N  IAG  +N  +E 
Sbjct: 199 YVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEG 258

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+   MM G+ + P+  +  S +  CS L++L  G+QVH  V K+ + K    +T L+ 
Sbjct: 259 ALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVH 318

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY +CG L D+ +++      D+   +AMIS    HG+G KA+ LF +M + G +P+ +T
Sbjct: 319 MYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVT 378

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+ALL AC+H+GL D G+++F+ M   YG      HY C+VDLLGR+G L EA  LI  M
Sbjct: 379 FLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSM 438

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P +    I+ TLLSAC+  K  D+AE  A  +   +P ++A  YV L+NI A  K+W DV
Sbjct: 439 PVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAP-YVLLSNIRATSKRWGDV 497

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
             +R  M+E ++ K PG SW+E    VH+F +GD+ HP    I E LKE+  +++  GY 
Sbjct: 498 TEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYA 557

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           PD+    H + +E KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K I
Sbjct: 558 PDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLI 617

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  REI+VRD +RFHHF+DG CSCGDYW
Sbjct: 618 SQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 142/342 (41%), Gaps = 64/342 (18%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N ++  +    ++  AR LF  + ++N +SW+ +I G I+ G L  A ELF   P
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP 135

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            ++V  W AM++G    G                                 ED L+    
Sbjct: 136 TRNVATWNAMVAGLTNVG-------------------------------LDEDSLQFFLA 164

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G+ P+   L SV   C+ L  +  G+QVH  V +S +  D      L  MY +CG 
Sbjct: 165 MRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGC 224

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L +   +   +    +V++N  I+G  Q+G  E AL  F  M+   + PD +TFV+ +  
Sbjct: 225 LAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISC 284

Query: 309 CN-----------HAGLVDLGIQ----YFDSMVNDY------GIAAKPDHYTCMVDLL-- 345
           C+           HA ++  G+        S+V+ Y      G + +     C +DL   
Sbjct: 285 CSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLL 344

Query: 346 -------GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
                  G  G+  +AV+L K+M     +P    F  LL AC
Sbjct: 345 SAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYAC 386



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +AS  S +   C    ++ L +Q+H     S    D      L+  Y   GDL  A  LF
Sbjct: 44  DASLFSHIFRACR---AIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLF 100

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             I +++V++WN +I G  ++G    A  LFDKM    +     T+ A++    + GL +
Sbjct: 101 EGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVA----TWNAMVAGLTNVGLDE 156

Query: 317 LGIQYFDSMVNDYGIAAKPDHY 338
             +Q+F +M  +      PD +
Sbjct: 157 DSLQFFLAMRRE---GMHPDEF 175


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/526 (40%), Positives = 310/526 (58%), Gaps = 37/526 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A    + + + D  SWN+MI G V++    +A  LF  M  +    +  ++ ++++
Sbjct: 290 DLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLN 349

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            +     +  A+ +  +       A+     A++  Y K G  D A  +F++M  K++++
Sbjct: 350 CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVIS 409

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W +++ G V N   E+ L+L   M  +GI P+   +++VL  C+ L+ L+ GKQVH    
Sbjct: 410 WTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFL 469

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           KS L    +    L+SMY KCG +EDA K+F  ++ +DV+TW A+I GYAQ+G+G     
Sbjct: 470 KSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR---- 525

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
                                   +HAGLV+ G  YF SM   YGI   P+HY CM+DLL
Sbjct: 526 ------------------------DHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLL 561

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR+GKL+EA +L+ +M  +P   ++  LL+ACRVH  ++L E AA NLF L P NA   Y
Sbjct: 562 GRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVP-Y 620

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L+N+Y+A  KW++ A+ R  MK   V K PG SWIE+ + VH F S DR HP    I+
Sbjct: 621 VLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIY 680

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
            K+ E+   +K AGYVPD+ FALH + EE KE  L +HSEKLA+AFGL+ +P G PIR+F
Sbjct: 681 SKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIF 740

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLR+CGDCH A KY+S +  R +I+RD+  FHHF++G CSC DYW
Sbjct: 741 KNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 211/478 (44%), Gaps = 50/478 (10%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
            V ++ + N VL+  +K  G++ DA++LFD +P  D  S+N M+     NS  +  A   
Sbjct: 37  TVHSSSDSNWVLSNLSKC-GRVDDARKLFDVMPDRDECSWNTMIG-AYANSGRLNEARKL 94

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMI---SGYIEC 114
           F   PI+   +W+++ISG+ +     +A +LF  M       N  +W +++   S Y+  
Sbjct: 95  FYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYV-- 152

Query: 115 GQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAM 169
             L+K  ++     K     +    T ++  Y K   +  AE LF+  P K N V W AM
Sbjct: 153 -LLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAM 211

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           + GY +N      ++  R M G GI  N  +  S+L  C  +S+   G QVH  + +S  
Sbjct: 212 VTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGF 271

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             +    + L+ MY KCGDL +A ++   ++  D V+WN+MI G  + G GE+AL LF  
Sbjct: 272 GANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRI 331

Query: 290 MKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ-----------------Y 321
           M    MK D  T+ ++L   +           H+ +V  G +                 Y
Sbjct: 332 MHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGY 391

Query: 322 FDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSA 376
           FD   + +      D   +T +V      G   EA+ L   ++ M   P   +   +LSA
Sbjct: 392 FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 451

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           C     L+  +    N       ++      L ++YA     +D  ++  SM+  +V+
Sbjct: 452 CAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVI 509



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 146/355 (41%), Gaps = 61/355 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFD----KIPQPDVVSYNIMLSCILLNSD--- 53
           M V   V+WNS++ G  +Q G  ++A  LF     +  + D  +Y  +L+C     D   
Sbjct: 301 MEVDDPVSWNSMIVGCVRQ-GLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRN 359

Query: 54  ------------------------DVVA-------AFDFFQRLPIKDTASWNTMISGFVQ 82
                                   D+ A       AFD F+++  KD  SW ++++G V 
Sbjct: 360 AMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVH 419

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVA 134
             +  +A  LF  M       + +  +A++S   E   L+   ++     K     S+  
Sbjct: 420 NGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSV 479

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR------- 187
             +++S Y K G ++ A K+FD M  ++++TW A+I GY +N    D   L+        
Sbjct: 480 DNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQ 539

Query: 188 -MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
            M    GI+P     + ++        L   K++   +   P   D T    L++     
Sbjct: 540 SMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQP---DATVWKALLAACRVH 596

Query: 247 GDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           G++   E A     E++ K+ V +  + + Y+  GK E+A +    MK  G+  +
Sbjct: 597 GNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 651



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 40/204 (19%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------C-- 253
           C  L   +L   + + V        ++    ++S   KCG ++DA            C  
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 254 -----------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
                            KLF E   +  +TW+++ISGY ++G   +AL LF +M+ EG +
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLV 352
           P+  T+ ++L  C+   L++ G Q     ++ + I  + D      T +VD+  +   ++
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQ-----IHAHAIKTQFDSNAFVVTGLVDMYAKCKCIL 190

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSA 376
           EA  L +  P K    ++  +++ 
Sbjct: 191 EAEYLFELAPDKRNHVLWTAMVTG 214


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/567 (39%), Positives = 325/567 (57%), Gaps = 13/567 (2%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIM----LSCILLNSDDVVAAFD-FFQRLPIKDTA 71
           A     L  A +LFD IPQPD   YN +    L   LL ++ ++  +    Q   + +  
Sbjct: 67  ASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNF 126

Query: 72  SWNTMISGFVQ-KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++ +++    + +  M     LF      +SV  +++I  Y+    L++A  +F   P  
Sbjct: 127 TFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHP 186

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMM 189
             V+WT++ISGY K+G +D A  +F  MP KN  +WNAM+A YV+ +   +   L  RM 
Sbjct: 187 DSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMK 246

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                  +    +++L  C+ L +L  GK +H+ + ++ +  D+   T ++ MYCKCG L
Sbjct: 247 AENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCL 306

Query: 250 EDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           E A ++F  L +  + + +WN MI G A HG GE A++LF +M+ + + PD ITF+ LL 
Sbjct: 307 EKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLT 366

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC H+GLV+ G  YF  M+  YGI  + +H+ CMVDLLGRAG + EA  LI +MP  P  
Sbjct: 367 ACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDV 426

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            + GTLL AC+ H+ ++L E     +  L P N +G YV LAN+YA   KW+D A++R  
Sbjct: 427 TVLGTLLGACKKHRNIELGEEIGRRVIELEP-NNSGRYVLLANLYANAGKWEDAAKVRKL 485

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           M +  V K PG+S IE+   VHEF +G+R HP+   +H K+ E+ + +K  GYV D    
Sbjct: 486 MDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGV 545

Query: 488 LHAVG---EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
           LH      EE  E  L +HSEKLAIAFGL +   G  +R+ KNLR+C DCH A K IS +
Sbjct: 546 LHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTV 605

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
             REIIVRD TRFH FK G CSC DYW
Sbjct: 606 FDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 143/310 (46%), Gaps = 24/310 (7%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +V+W S+++G++K  G + +A  +F  +PQ +  S+N M++   + ++    AF  F R+
Sbjct: 188 SVSWTSLISGYSKW-GLIDEAFTIFQLMPQKNSASWNAMMAA-YVQTNRFHEAFALFDRM 245

Query: 66  P-----IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
                 + D     TM+S       + + + +   +     E +S   +A++  Y +CG 
Sbjct: 246 KAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGC 305

Query: 117 LDKAVELFKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMI 170
           L+KA+++F   P+  + + +W  MI G    G  + A +LF EM  + +    +T+  ++
Sbjct: 306 LEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLL 365

Query: 171 AGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
                +   E+G      MI + GI P       ++     L    +  +  +L+ + P+
Sbjct: 366 TACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMV---DLLGRAGMVPEARKLIDEMPV 422

Query: 230 CKDTTALTPLISMYCKCGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             D T L  L+    K  ++   E+  +  +E++  +   +  + + YA  GK E A ++
Sbjct: 423 SPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKV 482

Query: 287 FDKMKDEGMK 296
              M D G+K
Sbjct: 483 RKLMDDRGVK 492


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 329/608 (54%), Gaps = 50/608 (8%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W++++     Q+G+ +++ +LF  +   D +  N    C LL++        + Q + 
Sbjct: 381 VVWSALITCL-DQQGQSEESIKLFHLMRLGDTLP-NQYTICSLLSAATNTGNLQYGQSIH 438

Query: 67  I--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                     D A  N +++ +++   +     L+ +M +++ +SW+A +SG  +CG  D
Sbjct: 439 ACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498

Query: 119 KAVE--------------------------LFKVAPVKSVVAW-------------TAMI 139
           + +                           LF V   + V A              TA+I
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALI 558

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K   ++ A+  F+ +  ++L TW  +I  Y + +  E  L   R M   G++PN  
Sbjct: 559 DMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEF 618

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +L+  L GCS L+SL+ G+Q+H +VFKS    D    + L+ MY KCG +E+A  LF  +
Sbjct: 619 TLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL 678

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            R+D + WN +I GYAQ+G+G KAL  F  M DEG+ PD +TF  +L AC+H GLV+ G 
Sbjct: 679 IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGK 738

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++F+SM  D+GI+   DH  CMVD+LGR GK  E  D I+KM       I+ T+L A ++
Sbjct: 739 EHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKM 798

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H  L L E AA  LF L P   +  Y+ L+NI+A   +WDDV R+R  M    V K PG 
Sbjct: 799 HNNLVLGEKAANKLFELQPEEESS-YILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGC 857

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SW+E    VH F S D  HP++  IH KL EL++ +    YVP  E+ LH VGE  K++ 
Sbjct: 858 SWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKEN 917

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L FHSE+LA+ F LI       IR+FKNLR+C DCH   K+IS+I  +EI+VRD  RFHH
Sbjct: 918 LRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHH 977

Query: 560 FKDGTCSC 567
           FK+G CSC
Sbjct: 978 FKNGACSC 985



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 159/332 (47%), Gaps = 40/332 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D+  W ++++ + + +  A AR +   MP+++ VSW+A+I G +  G  + ++ LF+   
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 126 ---VAPVKSVVA---------------------------------WTAMISGYMKFGKVD 149
              + P +  +A                                  +A++  Y K G+++
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
           LA K+F  MP +N VTWN ++ GY +       LKL   M+ L ++ N  +L++VL GC+
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
           +  +L+ G+ +H L+ K     +      L+ MY KCG   DA  +F  I++ D+V W+A
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           +I+   Q G+ E++++LF  M+     P+  T  +LL A  + G +  G Q   + V  Y
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKY 444

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G          +V +  + G + +   L + M
Sbjct: 445 GFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W ++++ Y K      A  +  +MP +++V+W A+I G V   +A D + L + M   GI
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI 209

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +L++ L  CS   +L LGKQ+H   FK  L  D    + L+ +Y KCG++E A K
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F+ +  ++ VTWN +++GYAQ G     L+LF  M +  +K +  T   +L  C ++  
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           +  G Q   S++   G          +VD+  + G  ++A+ + K +  KP   ++  L+
Sbjct: 330 LKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387

Query: 375 S 375
           +
Sbjct: 388 T 388



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 158/354 (44%), Gaps = 49/354 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+W +++ G   + G   D+  LF ++    ++     L+   L +  +  A D  +
Sbjct: 176 RDVVSWTALIQGLVAE-GFANDSIYLFQEMQNEGIMPNEFTLA-TGLKACSLCMALDLGK 233

Query: 64  RLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           ++  +        D    + ++  + +   +  A  +F+ MPE+N V+W+ +++GY + G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 116 QLDKAVELF-------------------------KVAPVKSVVAWTAMISGY-----MKF 145
            +   ++LF                         K      V+    +  GY     +  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 146 GKVDLAEK---------LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           G VD+  K         +F  +   ++V W+A+I    +   +E+ +KL  +M      P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  ++ S+L   ++  +LQ G+ +H  V+K     D      L++MY K G + D  KL+
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
             +  +D+++WNA +SG    G  ++ L +F  M +EG  P+  TF+++L +C+
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SS+L  C+   SL + K +H L+ K  +  D+     L+++Y KC     A  +  ++  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+W A+I G    G    ++ LF +M++EG+ P+  T    L AC+    +DLG Q 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ- 234

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             +     G+       + +VDL  + G++  A  +   MP
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/525 (42%), Positives = 308/525 (58%), Gaps = 12/525 (2%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSA--MI 108
           ++   F   P K   +W+++IS F Q      A   F  M      P+ +++  +A  + 
Sbjct: 60  SSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVA 119

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           +       L       K A    V   ++++  Y K G V+LA K+FDEMP KN+V+W+ 
Sbjct: 120 ALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSG 179

Query: 169 MIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           MI GY +    E+ L L +  +     IR N  +LSSVL  CS  +  +LGKQVH L FK
Sbjct: 180 MIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFK 239

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           +         + LIS+Y KCG +E   K+F E++ +++  WNAM+   AQH    +   L
Sbjct: 240 TSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFEL 299

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F++M+  G+KP+ ITF+ LL AC+HAGLV+ G   F  ++ ++GI     HY  +VDLLG
Sbjct: 300 FEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCF-GLMKEHGIEPGSQHYATLVDLLG 358

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAGKL EAV +IK+MP +P  +++G LL+ CR+H   +LA F A  +F +  A ++G  V
Sbjct: 359 RAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMG-AVSSGIQV 417

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+N YAA  +W++ AR R  M++  + K  G SW+E G  VH F +GDR H +   I+E
Sbjct: 418 LLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYE 477

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
           KL+EL + M  AGYV D  F L  V  + K Q + +HSE+LAIAFGLI  P   PIRV K
Sbjct: 478 KLEELGEEMAKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMK 537

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLRVCGDCH A K+IS    R IIVRD  RFH F+DG C+CGDYW
Sbjct: 538 NLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 2/185 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y K      + KLFD  P K+  TW+++I+ + +N      L+  R M+  G+ P+
Sbjct: 48  LINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPD 107

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +L +     + LSSL L   +H L  K+    D    + L+  Y KCGD+  A K+F 
Sbjct: 108 DHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFD 167

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLV 315
           E+  K+VV+W+ MI GY+Q G  E+AL LF +   +D  ++ +  T  ++L  C+ + L 
Sbjct: 168 EMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLF 227

Query: 316 DLGIQ 320
           +LG Q
Sbjct: 228 ELGKQ 232



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 13/259 (5%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSAM 107
           DV  A   F  +P K+  SW+ MI G+ Q     +A +LF    E+      N  + S++
Sbjct: 158 DVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSV 217

Query: 108 I-----SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           +     S   E G+    +  FK +   S    +++IS Y K G V+   K+F+E+  +N
Sbjct: 218 LRVCSASTLFELGKQVHGL-CFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRN 276

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           L  WNAM+    +++      +L   M  +G++PN  +   +L  CSH   ++ G+    
Sbjct: 277 LGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFG 336

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQHGKGE 281
           L+ +  +   +     L+ +  + G LE+A  +  E+  +   + W A+++G   HG  E
Sbjct: 337 LMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTE 396

Query: 282 KALRLFDKMKDEGMKPDSI 300
            A  + DK+ + G     I
Sbjct: 397 LASFVADKVFEMGAVSSGI 415


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/543 (39%), Positives = 322/543 (59%), Gaps = 27/543 (4%)

Query: 45  LSCILLN---SDDVVAAFDF----FQRLPIKDTASWNTMISGFVQ-----KKNMAKARDL 92
           +SC L++     ++  A D+    F+R+P  D  SW  +ISG+VQ      K MA   ++
Sbjct: 291 VSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEM 350

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKV 148
                + N +++S+++         D        + K     +     A++S Y + G +
Sbjct: 351 LNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCM 410

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           + A ++F+++  +      +MI    E        +++RM +G+    ++S+ +S++   
Sbjct: 411 EEARRVFNQLYER------SMIPCITEGRDFPLDHRIVRMDVGI----SSSTFASLISAA 460

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + +  L  G+Q+H +  K+    D      L+SMY +CG LEDAC+ F E++ ++V++W 
Sbjct: 461 ASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWT 520

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           +MISG A+HG  E+AL LF  M   G+KP+ +T++A+L AC+H GLV  G +YF SM  D
Sbjct: 521 SMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRD 580

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           +G+  + +HY CMVDLL R+G + EA++ I +MP K    ++ TLL ACR H  +++ E 
Sbjct: 581 HGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEI 640

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
            A N+  L P + A  YV L+N+YA    WD+VARIR +M++NN+ K  G SW+EV    
Sbjct: 641 TAKNVVELEPRDPAP-YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTT 699

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEFR+GD  HP    I+ KL  L +++K  GYVPD    LH + +E+KEQ LL HSEK+A
Sbjct: 700 HEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIA 759

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGLI      PIR+FKNLRVC DCH A KY+S   +REII+RD+ RFH  KDG CSCG
Sbjct: 760 VAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCG 819

Query: 569 DYW 571
           +YW
Sbjct: 820 EYW 822



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 46/299 (15%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAM----------------ISG 110
           +D    N++++ + +   +A AR++F  M   ++ VSW+AM                I  
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGE 141

Query: 111 YIECGQLDKAVELFKVAPV-------------------------KSVVAWTAMISGYMKF 145
            +E G L  A  L   A                             V   +A+I    + 
Sbjct: 142 MLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARN 201

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G +  A K+FD +  K +V W  +I+ YV+   AE+ ++L    +  G  P+  ++SS++
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMI 261

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRK 262
             C+ L S++LG Q+H L  +  L  D      L+ MY K      ++ A K+F  + + 
Sbjct: 262 SACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKN 321

Query: 263 DVVTWNAMISGYAQHGKGE-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           DV++W A+ISGY Q G  E K + LF +M +E +KP+ IT+ ++L +C      D G Q
Sbjct: 322 DVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQ 380



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           +  V   ++++ Y + G V  A  +FD M   +++V+W AM +    N      L L+  
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGE 141

Query: 189 MIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKC 246
           M+  G+ PNA +L +    C  H     +G  V  LV K  L   D    + LI M  + 
Sbjct: 142 MLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARN 201

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           GDL  A K+F  +  K VV W  +IS Y Q    E+A+ LF    ++G +PD  T  +++
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMI 261

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC   G V LG+Q   S+    G+A+       +VD+  ++  + +A+D   K+ F+  
Sbjct: 262 SACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMYAKS-NIGQAMDYANKV-FERM 318

Query: 367 P 367
           P
Sbjct: 319 P 319


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/484 (41%), Positives = 310/484 (64%), Gaps = 6/484 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  ++WN+++ G+A+ +G +  A +LF+ +P+ +VVS+N +++   +    V  A +
Sbjct: 155 MPVKNVISWNTMIEGYAR-KGWIDQALDLFEXMPERNVVSWNTVITA-FMQRRRVDEAQE 212

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P +D  SW TM++G  +   +  AR LF  MP +N VSW+ MI GY +  +LD+A
Sbjct: 213 LFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEA 272

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF+  P + + +W  MI+G+++ GK++ A   F +M  KN+VTW A+I+G+V++  +E
Sbjct: 273 FKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSE 332

Query: 181 DGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + LK+   M     ++PN  +  SVL  CS L++L  G+Q+HQ++ K+   +    ++ L
Sbjct: 333 EALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSAL 392

Query: 240 ISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           I+MY KCG+LE A K+F +  I  +DVV+WN MI+ YA HG G KA+ LFD+M+  G +P
Sbjct: 393 INMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRP 452

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           D++T++ALL AC+HAGLVD G++ F+++V D  I  + DH+TC+VDL GRAG+L EA D 
Sbjct: 453 DNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDF 512

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           IK +  KP  +++  LL+ C VH  +DL +  A  L    P N AG Y+ L+NIYA+  K
Sbjct: 513 IKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPEN-AGTYLVLSNIYASTGK 571

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + A +R+ MK+  + K PG SWIEVG  VH F  GD  H E  +I+  L +L  +MK 
Sbjct: 572 WREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKK 631

Query: 478 AGYV 481
            G+ 
Sbjct: 632 IGHT 635



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 189/350 (54%), Gaps = 44/350 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +  V+W +V+ G+ K  G +++A+ LFD+     +VV++  ++S   +  + +  A   F
Sbjct: 95  RDVVSWTAVITGYIKC-GMIEEAKTLFDRNDAIKNVVTWTALVSG-YVRWNRIEEARRLF 152

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             +P+K+  SWNTMI G+ +K  + +A DLF  MPE+N VSW+ +I+ +++  ++D+A E
Sbjct: 153 DAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQE 212

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF   P + V++WT M++G  K G++D A  LFD+MP +N+V+WN MI GY +N   ++ 
Sbjct: 213 LFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEA 272

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            KL   M      P                                  ++ ++   +I+ 
Sbjct: 273 FKLFEQM------PE---------------------------------RELSSWNTMITG 293

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSIT 301
           + + G LE A   F ++  K+VVTW A+ISG+ Q G+ E+AL++F +M+    +KP+  T
Sbjct: 294 FIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGT 353

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           FV++L AC+    +  G Q    +++        D  + ++++  + G+L
Sbjct: 354 FVSVLGACSKLAALCEG-QQIHQIISKTVYQEVADVVSALINMYSKCGEL 402



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 172/323 (53%), Gaps = 28/323 (8%)

Query: 66  PIKD------TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           P++D       A  N +I+   ++  + +AR +F  MP+++ VSW+A+I+GYI+CG +++
Sbjct: 56  PVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEE 115

Query: 120 AVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           A  LF +   +K+VV WTA++SGY+++ +++ A +LFD MP KN+++WN MI GY    W
Sbjct: 116 AKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGW 175

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            +  L L   M       N  S ++V+        +    +  +L  + P  +D  + T 
Sbjct: 176 IDQALDLFEXM----PERNVVSWNTVITAFMQRRRVD---EAQELFNRMPE-RDVISWTT 227

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           +++   K G ++DA  LF ++  ++VV+WN MI GYAQ+ + ++A +LF++M +  +   
Sbjct: 228 MVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSW 287

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           +      +      G ++  + +F  M N   +      +T ++    + G+  EA+ + 
Sbjct: 288 NTMITGFI----QNGKLERAVDFFYKMSNKNVVT-----WTAVISGHVQDGRSEEALKIF 338

Query: 359 KKMP----FKPQPAIFGTLLSAC 377
            +M      KP    F ++L AC
Sbjct: 339 SEMQAANNVKPNEGTFVSVLGAC 361


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 313/526 (59%), Gaps = 9/526 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYI 112
           DVVAA   F  + +K   +WN MI+G+V+  +  +  ++F  M E +       ++S   
Sbjct: 221 DVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVAT 280

Query: 113 ECGQLDKAVELFKVAP-------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            CG+L  A     +A        ++S    TA++  Y K G++D A +LFD M ++++V 
Sbjct: 281 ACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVA 340

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W+AMI+GY ++    + L +   M G  + PN  ++ SVL  C+ L +L+ GK VH  + 
Sbjct: 341 WSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIR 400

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +  L       T L+  Y KCG ++DA K F  +  ++  TW A+I G A +G+  +AL 
Sbjct: 401 RKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALE 460

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF  M +  ++P  +TF+ +LLAC+H  LV+ G ++F SM  DYGI  + +HY CMVDLL
Sbjct: 461 LFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLL 520

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GRAG + EA   I+ MP +P   ++  LLSAC VHK +++ E A   +  L+P + +G Y
Sbjct: 521 GRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCH-SGNY 579

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           + L+N YA++ +W + A +R  MKE  V K+PG S IE+   + EF + D  HP+L  I+
Sbjct: 580 ILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIY 639

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           EK+ E+ + +K+ GY+P+   A   V E  K+  +  HSEKLAIAFGL+K   G  IR+ 
Sbjct: 640 EKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLS 699

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLRVC DCH ATK IS +  REIIVRD  RFHHFKDG CSC DYW
Sbjct: 700 KNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 172/356 (48%), Gaps = 15/356 (4%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS--WSAMISGYIECGQL-----D 118
           P +   S+N +I  F++  +   A  LF+ M +  +VS     + +    C ++      
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 119 KAVEL--FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           + V+   FK   +       ++I  Y   G V  A  LF  +  K ++ WNAMIAGYV+N
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              ++ +++ + M+ +    +  +L SV   C  L    LG+ + +   +  + +     
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLA 310

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           T L+ MY KCG+L+ A +LF  +  +DVV W+AMISGY Q  +  +AL +F++M+   + 
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           P+ +T V++L AC   G ++ G ++  S +    +       T +VD   + G + +AV 
Sbjct: 371 PNDVTMVSVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVK 429

Query: 357 LIKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
             + MP +      A+   + S  R  + L+L  F++M   N+ P +     V LA
Sbjct: 430 AFESMPVRNTWTWTALIKGMASNGRSREALEL--FSSMLEANIEPTDVTFIGVLLA 483


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 309/546 (56%), Gaps = 43/546 (7%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSW------------------- 104
           KD  SWN+M++GFVQ     KA DLF  M  +    N+V+                    
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365

Query: 105 ----------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
                           +A I  +++CG+++ A  LF     + VV+WT +I GY K  + 
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR--MMIGLGIRPNASSLSSVLL 206
            +A  +FD MP K++  WN +I+GY ++   ++ L + R   +   G RP+  +L S L 
Sbjct: 426 GIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLS 485

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+ L ++ +G+ +H  + K  +  +    T LI MY K GD+E A ++F  I  KDV  
Sbjct: 486 ACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFV 545

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W+AMI+G A HG+GE A+ LF  M++  +KP+S+TF  LL AC+H+GLVD G + FD M 
Sbjct: 546 WSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEME 605

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
             YG+  K  HY+CMVD+LGRAG L EA+  I+ MP  P  +++G LL AC +H  L+LA
Sbjct: 606 RVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELA 665

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
           E A   L  + P N  G YV L+N+YA    W+ V+ +R  M+++ + K  G S IE+  
Sbjct: 666 EKACSRLLEIEPGN-HGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDG 724

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQLLLFHSE 505
            VHEF  GD  HP    I+ KL E+  R++  GYV +    L  V  EE+KE+ L  HSE
Sbjct: 725 TVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSE 784

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           K+AIAFGLI+      IR+ KNLRVC DCH   K +S +  R+I++RD  RFHHF  G C
Sbjct: 785 KMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHC 844

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 845 SCQDYW 850



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 101/187 (54%), Gaps = 3/187 (1%)

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS-WAEDGLKLLRMMIGLGIRPNA 198
           + +  F  +D A K+FD++P  NL +WN +I     +S   +  L  +RM+      PN 
Sbjct: 181 AAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK 240

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-- 256
            +   ++   +      +GK VH +  K+    D   L  LI  Y  CG L+ A  +F  
Sbjct: 241 FTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
           +E   KD+V+WN+M++G+ Q G  +KAL LF++M++EG+ P+++T V+++ AC     + 
Sbjct: 301 IEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 317 LGIQYFD 323
           LG +  D
Sbjct: 361 LGRKVCD 367


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 314/528 (59%), Gaps = 9/528 (1%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAM 107
           S +++ A   F+ +P  D   W+ MI+ + Q     +A DLFL M +     N+ +++++
Sbjct: 285 SGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASV 344

Query: 108 ISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +        LD   ++     K     +V    A++  Y K G+++ + KLF+E+P +N 
Sbjct: 345 LQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND 404

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           VTWN +I GYV+    E  + L   M+   ++P   + SSVL   + L++L+ G Q+H L
Sbjct: 405 VTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSL 464

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
             K+   KDT     LI MY KCG + DA   F ++ ++D V+WNAMI GY+ HG   +A
Sbjct: 465 TIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEA 524

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           L LFD M+    KP+ +TFV +L AC++AGL+  G  +F+SM  DY I    +HYTCMV 
Sbjct: 525 LNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVW 584

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGR G+  EA+ LI ++ ++P   ++  LL AC +HK++DL    A ++  + P + A 
Sbjct: 585 LLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDAT 644

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            +V L+N+YA   +WD+VA +R  M++  V K PG SW+E   VVH F  GD  HP++  
Sbjct: 645 -HVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKL 703

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I   L+ L K+ + AGYVPD    L  V ++ KE+ L  HSE+LA+A+GLI+ PL   IR
Sbjct: 704 ICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIR 763

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KNLR+C DCH   K IS + +REI++RD  RFHHF+ G CSCGDYW
Sbjct: 764 IIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 174/369 (47%), Gaps = 44/369 (11%)

Query: 37  DVVSYNIMLSCILLNSDDVVAA----FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           D  SY  ML  I+ N  D +A         +R    D  + N +++ +VQ  ++  A  L
Sbjct: 33  DSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKL 92

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVE------------------------------ 122
           F  MP+ N++S+  +  GY    Q  +A+                               
Sbjct: 93  FDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA 152

Query: 123 ---------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                    ++K+         TA+I  Y   G VD+A  +FD++  K++V+W  M+A Y
Sbjct: 153 HLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACY 212

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            EN + E+ L+L   M  +G +PN  ++S  L  C  L +  +GK VH    K     D 
Sbjct: 213 AENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDL 272

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ +Y K G++ DA +LF E+ + D++ W+ MI+ YAQ  + ++AL LF +M+  
Sbjct: 273 FVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQT 332

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + P++ TF ++L AC  +  +DLG Q   S V  +G+ +       ++D+  + G++  
Sbjct: 333 SVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIEN 391

Query: 354 AVDLIKKMP 362
           ++ L +++P
Sbjct: 392 SMKLFEELP 400


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/608 (37%), Positives = 338/608 (55%), Gaps = 48/608 (7%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP---QPDVVSYNIMLS-CILLNSDDVVAAFDF--F 62
           WN++LA  ++  G    A  +F  +P   +PD  ++ + L+ C  L   D   A     F
Sbjct: 80  WNALLAARSRA-GSPGAALRVFRALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV- 121
                +D    + ++  + +   M  A  +F  MP K+ V+WS M++G++  G+  +A+ 
Sbjct: 139 AAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALG 198

Query: 122 -------------ELFKVAPVKS-------------------------VVAWTAMISGYM 143
                        E+  V  +++                         VV  T+++  Y 
Sbjct: 199 MYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYA 258

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           K G  D+A ++F  MP +N V+WNA+I+G+ +N  A++ L L R M   G++P++ +L S
Sbjct: 259 KNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVS 318

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
            LL C+ +  L+LGK +H  + +  L       T ++ MY KCG LE A KLF ++  +D
Sbjct: 319 ALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRD 377

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           +V WNAMI+    HG G  AL LF ++ + G+KPD  TF +LL A +H+GLV+ G  +FD
Sbjct: 378 LVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFD 437

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            M+ ++GI     H  C+VDLL R+G + EA +++  M  +P   I+  LLS C  +K+L
Sbjct: 438 RMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKL 497

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           +L E  A  +    P +  G    ++N+YAA KKWD V  IR  MK++   K+PGYS IE
Sbjct: 498 ELGETIAKKILESQPEDI-GVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIE 556

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           V    H F   D+ HP+   I + + +L   M+  GYVP  EF  H + E+VKEQLL +H
Sbjct: 557 VHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYH 616

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SE+LAIAFGL+    GT + + KNLRVCGDCH A KYIS I  REI+VRD  RFHHFKDG
Sbjct: 617 SERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDG 676

Query: 564 TCSCGDYW 571
            CSCGDYW
Sbjct: 677 ACSCGDYW 684



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 22/344 (6%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKA----VELF 124
           +WN +++   +  +   A  +F A+P     +S +++  ++     G LD A    V  F
Sbjct: 79  AWNALLAARSRAGSPGAALRVFRALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                + V   +A++  Y + G +  A ++FD MP K+ V W+ M+AG+V      + L 
Sbjct: 139 AAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALG 198

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           +   M   G+  +   +  V+  C+   + ++G  VH    +  +  D    T L+ MY 
Sbjct: 199 MYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYA 258

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           K G  + A ++F  +  ++ V+WNA+ISG+AQ+G  ++AL LF +M   G++PDS   V+
Sbjct: 259 KNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVS 318

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM-----VDLLGRAGKLVEAVDLIK 359
            LLAC   G + LG          +G   +   + C+     +D+  + G L  A  L  
Sbjct: 319 ALLACADVGFLKLGKSI-------HGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFN 371

Query: 360 KMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPANA 401
           K+  +    ++  +++ C  H      LA F  +N   + P +A
Sbjct: 372 KLSSR-DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHA 414



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 61/308 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++++GFA Q G   +A +LF ++    +   +  L   LL   DV     
Sbjct: 273 MPYRNAVSWNALISGFA-QNGHADEALDLFREMSTSGLQPDSGALVSALLACADV----- 326

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F +L           I GF+ ++             E   +  +A++  Y +CG L+ A
Sbjct: 327 GFLKL--------GKSIHGFILRR------------LEFQCILGTAVLDMYSKCGSLESA 366

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF     + +V W                               NAMIA    +    
Sbjct: 367 RKLFNKLSSRDLVLW-------------------------------NAMIACCGTHGCGH 395

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPL 239
           D L L + +   GI+P+ ++ +S+L   SH   ++ GK    +++ +  +         +
Sbjct: 396 DALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCV 455

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           + +  + G +E+A ++   +  +  +  W A++SG   + K E    +  K+ +   +P+
Sbjct: 456 VDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILES--QPE 513

Query: 299 SITFVALL 306
            I  +AL+
Sbjct: 514 DIGVLALV 521



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 239 LISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
           L + Y + G L DA +  L      R  +  WNA+++  ++ G    ALR+F  +     
Sbjct: 50  LAAAYARVGAL-DAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSA- 107

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVE 353
           +PDS TF   L AC   G +D         V  +      D + C  ++ +  R G + +
Sbjct: 108 RPDSTTFTLALTACARLGDLDAAEAV---RVRAFAAGYGRDVFVCSALLHVYSRCGAMGD 164

Query: 354 AVDLIKKMPFKPQPA 368
           A+ +   MP K   A
Sbjct: 165 AIRVFDGMPRKDHVA 179


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/523 (41%), Positives = 314/523 (60%), Gaps = 19/523 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA--------RDLFLAMPEKNSVSWSAMISGYIE 113
           F  +  +D  SWNT+I G  + K   +A        RD F  MP+  + + S ++  + E
Sbjct: 127 FDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGF--MPD--TFTLSTVLPIFAE 182

Query: 114 CGQLDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           C  + + + +   A +K+     V   +++I  Y    ++D + K+FD     + V WN+
Sbjct: 183 CADIKRGMVVHGYA-IKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNS 241

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M+AGY +N   E+ L + R M+  G+RP   + SS++    +LS L+LGKQ+H  + ++ 
Sbjct: 242 MLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRAR 301

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              +    + LI MYCKCG+++ A ++F  IQ  D+V+W AMI GYA HG   +A  LF+
Sbjct: 302 FNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFE 361

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M+   +KP+ ITF+A+L AC+HAGLVD G +YF+SM N YG     +H   + D LGRA
Sbjct: 362 RMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRA 421

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G L EA + I +M  KP  +++ TLL ACRVHK   LAE  A  +F L P  + G +V L
Sbjct: 422 GDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP-KSMGSHVIL 480

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           +N+Y+A  +W++ A++R SM+   + K P  SWIEV   +H F + D+ HP    I + L
Sbjct: 481 SNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDAL 540

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
               ++M   GYVP++E  L  + EE K ++L  HSEKLAI FG+I  P GT IRV KNL
Sbjct: 541 NVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNL 600

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVC DCH ATK+IS I  REI+VRD  RFH FKDG CSCGD+W
Sbjct: 601 RVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 127/271 (46%), Gaps = 35/271 (12%)

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           G ++    +   K+FDEM  ++ V+WN +I G  E+   ++ L ++R M   G  P+  +
Sbjct: 113 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFT 172

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           LS+VL   +  + ++ G  VH    K+    D    + LI MY  C  ++ + K+F    
Sbjct: 173 LSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS 232

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             D V WN+M++GYAQ+G  E+AL +F +M   G++P  +TF +L+ A  +  L+ LG Q
Sbjct: 233 DCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQ 292

Query: 321 YF---------------DSMVNDY--------------GIAAKPD--HYTCMVDLLGRAG 349
                             S+++ Y              GI + PD   +T M+      G
Sbjct: 293 LHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQS-PDIVSWTAMIMGYALHG 351

Query: 350 KLVEAVDLIKKMPF---KPQPAIFGTLLSAC 377
              EA  L ++M     KP    F  +L+AC
Sbjct: 352 PTTEAFVLFERMELGNVKPNHITFLAVLTAC 382



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 130/308 (42%), Gaps = 52/308 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WNS+LAG+A Q G +++A  +F ++ Q  V    +  S        ++ AF     L 
Sbjct: 237 VLWNSMLAGYA-QNGSVEEALGIFRRMLQAGVRPVPVTFS-------SLIPAFGNLSLLR 288

Query: 67  IKDTASWNTMISGFVQKKNMAKAR---DLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           +           G      + +AR   ++F++         S++I  Y +CG +D A  +
Sbjct: 289 L-----------GKQLHAYLIRARFNDNIFIS---------SSLIDMYCKCGNVDIARRV 328

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWA 179
           F       +V+WTAMI GY   G    A  LF+ M   N+    +T+ A++         
Sbjct: 329 FNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLV 388

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-----QVHQLVFKSPLCKDTT 234
           ++G K    M       N       L  C+ L+   LG+     + +  + +  + K T+
Sbjct: 389 DNGWKYFNSM------SNQYGFVPSLEHCAALAD-TLGRAGDLDEAYNFISEMKI-KPTS 440

Query: 235 ALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           ++   +   C+        E+  K   E++ K + +   + + Y+  G+  +A +L   M
Sbjct: 441 SVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSM 500

Query: 291 KDEGMKPD 298
           + +GMK +
Sbjct: 501 RIKGMKKE 508


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/568 (39%), Positives = 339/568 (59%), Gaps = 22/568 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLP----IKDTASWN 74
           G++  A+ +FD++   DVV++N M+   C     D+   AF  F+ +     + D     
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDE---AFKLFEEMKDSNVMPDEMILC 216

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            ++S   +  NM   R ++  + E +    +   +A+++ Y   G +D A E F+   V+
Sbjct: 217 NIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR 276

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           ++   TAM+SGY K G++D A+ +FD+   K+LV W  MI+ YVE+ + ++ L++   M 
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             GI+P+  S+ SV+  C++L  L   K VH  +  + L  + +    LI+MY KCG L+
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
               +F ++ R++VV+W++MI+  + HG+   AL LF +MK E ++P+ +TFV +L  C+
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GLV+ G + F SM ++Y I  K +HY CMVDL GRA  L EA+++I+ MP      I+
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G+L+SACR+H  L+L +FAA  +  L P +  G  V ++NIYA  ++W+DV  IR  M+E
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEP-DHDGALVLMSNIYAREQRWEDVRNIRRVMEE 575

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
            NV K  G S I+     HEF  GD+ H +   I+ KL E+  ++KLAGYVPD    L  
Sbjct: 576 KNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVD 635

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLI-------KVPLGTPIRVFKNLRVCGDCHRATKYISA 543
           V EE K+ L+L+HSEKLA+ FGL+       K   G  IR+ KNLRVC DCH   K +S 
Sbjct: 636 VEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSK 694

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + +REIIVRD TRFH +K+G CSC DYW
Sbjct: 695 VYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 184/407 (45%), Gaps = 60/407 (14%)

Query: 26  AQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           A  +F  IP P + + +N  L   L  S +  A   F+QR+                  +
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLR-DLSRSSEPRATILFYQRI------------------R 103

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           ++    D F  +P   +VS    +S   E  +L      FK+A +      T  +  Y  
Sbjct: 104 HVGGRLDQFSFLPILKAVS---KVSALFEGMELHGVA--FKIATLCDPFVETGFMDMYAS 158

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G+++ A  +FDEM  +++VTWN MI  Y      ++  KL   M    + P+   L ++
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------------------- 244
           +  C    +++  + +++ + ++ +  DT  LT L++MY                     
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNL 278

Query: 245 -----------KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                      KCG L+DA  +F + ++KD+V W  MIS Y +    ++ALR+F++M   
Sbjct: 279 FVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCS 338

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KPD ++  +++ AC + G++D   ++  S ++  G+ ++      ++++  + G L  
Sbjct: 339 GIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDA 397

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
             D+ +KMP +     + ++++A  +H      L+ FA M   N+ P
Sbjct: 398 TRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEP 443



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 83/160 (51%), Gaps = 11/160 (6%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +++ ++ N+ L     + G L   +++F+K+P+ +VVS++ M++ + ++  +   A   F
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHG-EASDALSLF 433

Query: 63  QRLPIKDT----ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIE 113
            R+  ++      ++  ++ G      + + + +F +M ++ +++     +  M+  +  
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGR 493

Query: 114 CGQLDKAVELFKVAPVKS-VVAWTAMISGYMKFGKVDLAE 152
              L +A+E+ +  PV S VV W +++S     G+++L +
Sbjct: 494 ANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/615 (38%), Positives = 344/615 (55%), Gaps = 50/615 (8%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKI-------PQPDVVSYNIMLSCILLNSDDVVA 57
           +T  +N ++  F    G  +DA  LF ++       P     +   + SC  + + DV  
Sbjct: 82  STPCYNVLMRAFL-HAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGR 140

Query: 58  AFDFF--QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
               +  +R  + D    +++I  +    ++A AR +F A  E   V W+A+++ Y++ G
Sbjct: 141 GVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNG 200

Query: 116 QLDKAVELFK-----------VAPVKSVVA-----------W-----------------T 136
              + VE+FK           V  V  V A           W                 T
Sbjct: 201 DWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVT 260

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A++  Y K G++  A +LFD M ++++V W+AMI+GY +     + L L   M    + P
Sbjct: 261 ALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEP 320

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  ++ SVL  C+ L +L+ GK VH  V +  L   T   T L+  Y KCG ++DA + F
Sbjct: 321 NDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAF 380

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  K+  TW A+I G A +G+G +AL LF  M++ G++P  +TF+ +L+AC+H+ LV+
Sbjct: 381 ESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVE 440

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G ++FDSM  DYGI  + +HY CMVDLLGRAG + EA   I+ MP +P   I+  LLS+
Sbjct: 441 EGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSS 500

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           C VH+ + + E A   + +LNP++ +G YV L+NIYA+  +W D A +R  MK+  + K 
Sbjct: 501 CAVHRNVGIGEEALKQIISLNPSH-SGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKT 559

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S IE+  VV EF + D  HPEL  I++K++E+  R+K+AGYVP+       V E  K
Sbjct: 560 PGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREK 619

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E  +  HSEKLAIAFGL+K+  G  IR+ KNLRVC DCH ATK IS +  REI+VRD   
Sbjct: 620 EVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNI 679

Query: 557 FHHFKDGTCSCGDYW 571
           FHHFKDGTCSC DYW
Sbjct: 680 FHHFKDGTCSCNDYW 694



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 187/386 (48%), Gaps = 22/386 (5%)

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAMI 108
           V+ F    R P+  T  +N ++  F+   +   A  LF+ M       P     +  A+ 
Sbjct: 70  VSLFRLGPRPPLS-TPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALK 128

Query: 109 SGYIECG-QLDKAVELFKV--APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           S    C   + + V+ + V    V      +++I  Y   G V  A  +FD      +V 
Sbjct: 129 SCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVM 188

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNA++A Y++N    + +++ + M+ +G+  +  +L SV+  C  +   +LGK V   V 
Sbjct: 189 WNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVD 248

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +  L ++   +T L+ MY KCG++  A +LF  +Q +DVV W+AMISGY Q  +  +AL 
Sbjct: 249 EEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALG 308

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF +M+   ++P+ +T V++L AC   G ++ G ++  S V    ++      T +VD  
Sbjct: 309 LFSEMQLARVEPNDVTMVSVLSACAVLGALETG-KWVHSYVRRKRLSLTTILGTALVDFY 367

Query: 346 GRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            + G + +AV+  + MP K      A+   + +  R  + L+L  F++M    + P +  
Sbjct: 368 AKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALEL--FSSMREAGIEPTDVT 425

Query: 403 GCYVQLANIYAAM-----KKWDDVAR 423
              V +A  ++ +     + +D +AR
Sbjct: 426 FIGVLMACSHSCLVEEGRRHFDSMAR 451


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/527 (39%), Positives = 314/527 (59%), Gaps = 11/527 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI------ 108
           +V A   F ++P KD  +W  MI G+ +  N+  A   F  M  +  V     +      
Sbjct: 170 LVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLS 229

Query: 109 -SGYIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLV 164
            SG ++ G L +A+   + K    + V    A+   Y K   +D A ++   +  + N+V
Sbjct: 230 ASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVV 289

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +  ++I GY+E    E  L +   +   G+ PN  + SS++ GC+  + L+ G Q+H  V
Sbjct: 290 SATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEV 349

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K+ L  D+   + L+ MY KCG +  + +LF EI+    + WNA I+  AQHG G +A+
Sbjct: 350 IKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAI 409

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           R FD+M   G++P+ ITFV+LL AC+HAGLVD G++YF SM + +GI  K +HY+C++D+
Sbjct: 410 RAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDM 469

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG+L EA   I +MP KP    + +LL ACR+    +L E AA N+  L P N  G 
Sbjct: 470 YGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDN-TGV 528

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           +V L+ IYA++ +W+DV  +R  M++N + K+PG+SW++     H F S D  HP+   I
Sbjct: 529 HVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKI 588

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +EKL+EL +R+K  GYVPD  F    + +  K+++L +HSE++A+AF LI +P   PI V
Sbjct: 589 YEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIV 648

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K+IS +E R+IIVRD +RFHHF  G CSCGDYW
Sbjct: 649 KKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 171/434 (39%), Gaps = 80/434 (18%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW--------- 104
           DV +A   F  +P  +  SW T++SG  Q      A   F +M     V           
Sbjct: 68  DVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAAR 127

Query: 105 ------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                         S +   Y + G L +A  +F   P K  VA
Sbjct: 128 AAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVA 187

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           WTAMI GY K G ++ A   F +M  + LV  +  +                        
Sbjct: 188 WTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHV------------------------ 223

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
                 L SVL     L    L + +H  V KS   ++      L  MY K  D+++A +
Sbjct: 224 ------LCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAAR 277

Query: 255 LF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +  ++    +VV+  ++I GY +    EKAL +F +++ +G++P+  TF +++  C    
Sbjct: 278 VVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQA 337

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           L++ G Q    ++    I+   D +  + ++D+ G+ G +  ++ L K++ +    A   
Sbjct: 338 LLEQGAQLHAEVIKTSLIS---DSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNA 394

Query: 372 TL-LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
            + + A   H R  +  F  M    + P +    +V L    +     D+  +   SMK+
Sbjct: 395 AINVLAQHGHGREAIRAFDRMTSSGIRPNHIT--FVSLLTACSHAGLVDEGLKYFYSMKD 452

Query: 431 NNVVKMPG--YSWI 442
           ++ ++  G  YS I
Sbjct: 453 HHGIEPKGEHYSCI 466



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
             +++  A  L LA P +     S   +G +  G+   A  +   A   S      +I+ 
Sbjct: 8   HSRSLDTATSLRLAAPLQ-----SCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITM 62

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y     V  A +LFD MP  NLV+W  +++G  +NS   D L     M   G+ P   +L
Sbjct: 63  YSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFAL 122

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SS     + L++   G Q+H +  +     +    + L  MY K G L +AC++F ++ +
Sbjct: 123 SSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQ 182

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
           KD V W AMI GYA++G  E A+  F  M+ EG+
Sbjct: 183 KDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGL 216



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 201 LSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           L++ L  C     L+LG+ +H +LV        T     LI+MY  C D+  A +LF  +
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAM 79

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
            R ++V+W  ++SG  Q+     AL  F  M   G+ P      +   A         G 
Sbjct: 80  PRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGA 139

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           Q     V   G  A+    + + D+  ++G LVEA  +  +MP K
Sbjct: 140 QLHCVGVR-LGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQK 183


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/523 (41%), Positives = 303/523 (57%), Gaps = 10/523 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F+ +   D   +N+M  G+ +  N  +   LF+ + E   +  +      ++   +
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            KA+E          K+    +V     +I+ Y +   VD A  +FD +    +V +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY   +   + L L R M G  ++PN  +L SVL  C+ L SL LGK +H+   K   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
           CK     T LI M+ KCG L+DA  +F +++ KD   W+AMI  YA HGK EK++ +F++
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+ E ++PD ITF+ LL AC+H G V+ G +YF  MV+ +GI     HY  MVDLL  AG
Sbjct: 322 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAG 381

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L +A + I K+P  P P ++  LL+AC  H  LDLAE  +  +F L+ ++  G YV L+
Sbjct: 382 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH-GGDYVILS 440

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YA  KKW+ V  +R  MK+   VK+PG S IEV  VVHEF SGD V      +H  L 
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500

Query: 470 ELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
           E+ K +KL+GYVPD    +HA + ++ KE  L +HSEKLAI FGL+  P GT IRV KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVC DCH A K IS I  R+++ RD  RFHHF+DG CSCGD+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF-------GKVDLAEKLFDEMPTKNLVT 165
           +C  L + +++   A +KS +   + ++  + F         +  A  LF+ M   ++V 
Sbjct: 38  KCNSLRELMQIQAYA-IKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVI 96

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           +N+M  GY   +   +   L   ++  GI P+  +  S+L  C+   +L+ G+Q+H L  
Sbjct: 97  FNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSM 156

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K  L  +      LI+MY +C D++ A  +F  I    VV +NAMI+GYA+  +  +AL 
Sbjct: 157 KLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALS 216

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF +M+ + +KP+ IT +++L +C   G +DLG ++       +         T ++D+ 
Sbjct: 217 LFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMF 275

Query: 346 GRAGKLVEAVDLIKKMPFKPQPA 368
            + G L +AV + +KM +K   A
Sbjct: 276 AKCGSLDDAVSIFEKMRYKDTQA 298



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 113/248 (45%), Gaps = 10/248 (4%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
           +DV +A   F R+       +N MI+G+ ++    +A  LF  M  K    N ++  +++
Sbjct: 178 EDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S     G LD    + K A   S   +    TA+I  + K G +D A  +F++M  K+  
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ 297

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQL 223
            W+AMI  Y  +  AE  + +   M    ++P+  +   +L  CSH   ++ G++   Q+
Sbjct: 298 AWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQM 357

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWNAMISGYAQHGKGEK 282
           V K  +         ++ +    G+LEDA +   ++      + W  +++  + H   + 
Sbjct: 358 VSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDL 417

Query: 283 ALRLFDKM 290
           A ++ +++
Sbjct: 418 AEKVSERI 425



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 39/221 (17%)

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED----ACKLFLEIQ 260
           +L  S  +SL+   Q+     KS + +D + +  LI+ +C     E     A  LF  + 
Sbjct: 33  ILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLIN-FCTESPTESSMSYARHLFEAMS 90

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
             D+V +N+M  GY++     +   LF ++ ++G+ PD+ TF +LL AC  A  ++ G Q
Sbjct: 91  EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150

Query: 321 YF---------------DSMVNDYGIAAKPDH---------------YTCMVDLLGRAGK 350
                             +++N Y      D                Y  M+    R  +
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 351 LVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEF 388
             EA+ L ++M     KP      ++LS+C +   LDL ++
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 313/527 (59%), Gaps = 13/527 (2%)

Query: 57  AAFD---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYI 112
           A FD    F+ +P KD  SW  MI G+ +     +A   F  M  E+ ++    + S   
Sbjct: 156 AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 215

Query: 113 ECGQLDKA-------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLV 164
            CG L            + K+     +    A+   Y K G ++ A  +F  +   +N+V
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           ++  +I GYVE    E GL +   +   GI PN  + SS++  C++ ++L+ G Q+H  V
Sbjct: 276 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K    +D    + L+ MY KCG LE A + F EI     + WN+++S + QHG G+ A+
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 395

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           + F++M D G+KP++ITF++LL  C+HAGLV+ G+ YF SM   YG+    +HY+C++DL
Sbjct: 396 KFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 455

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG+L EA + I +MPF+P    + + L ACR+H   ++ + AA  L  L P N +G 
Sbjct: 456 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKN-SGA 514

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
            V L+NIYA  ++W+DV  +R+ M++ NV K+PGYSW++VG   H F + D  H    +I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAI 574

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +EKL  L  ++K AGYVP  +     + + +KE+LL  HSE++A+AF LI +P+G PI V
Sbjct: 575 YEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIV 634

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH A K+IS +  R+IIVRD +RFHHF DG+CSCGDYW
Sbjct: 635 KKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 139/274 (50%), Gaps = 34/274 (12%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +++ Y K G++D A KLFD MP +NLV+W AMI+G  +NS   + ++    M   G  P 
Sbjct: 46  LVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPT 105

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + SS +  C+ L S+++GKQ+H L  K  +  +    + L  MY KCG + DACK+F 
Sbjct: 106 QFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFE 165

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN------- 310
           E+  KD V+W AMI GY++ G+ E+AL  F KM DE +  D     + L AC        
Sbjct: 166 EMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKF 225

Query: 311 ----HAGLVDLGIQY-----------------FDSMVNDYGIAAKPDH---YTCMVDLLG 346
               H+ +V LG +                   +S  N +GI ++  +   YTC++D   
Sbjct: 226 GRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYV 285

Query: 347 RAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
              ++ + + +   +++   +P    F +L+ AC
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKAC 319



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 153/332 (46%), Gaps = 11/332 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIE 113
           A   F  +P ++  SW  MISG  Q    ++A   F  M     V    ++S+ I     
Sbjct: 59  ALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACAS 118

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G ++   ++     K      +   + +   Y K G +  A K+F+EMP K+ V+W AM
Sbjct: 119 LGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAM 178

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY +    E+ L   + MI   +  +   L S L  C  L + + G+ VH  V K   
Sbjct: 179 IDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF 238

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
             D      L  MY K GD+E A  +F ++ + ++VV++  +I GY +  + EK L +F 
Sbjct: 239 ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV 298

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +++ +G++P+  TF +L+ AC +   ++ G Q   + V        P   + +VD+ G+ 
Sbjct: 299 ELRRQGIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKC 357

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           G L  A+    ++   P    + +L+S    H
Sbjct: 358 GLLEHAIQAFDEIG-DPTEIAWNSLVSVFGQH 388



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + ++L+ V+   +    L+ GKQ+H L+  +     T     L++MY KCG+L+ A KLF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             + ++++V+W AMISG +Q+ K  +A+R F  M+  G  P    F + + AC   G ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
           +G Q    +   +GI ++    + + D+  + G + +A  + ++MP K +
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/623 (36%), Positives = 344/623 (55%), Gaps = 62/623 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V W  ++  ++ Q G L DA +LF ++   +       L+ +L          +
Sbjct: 208 MQHKNLVTWTLMITRYS-QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLL----SACVELE 262

Query: 61  FFQRLPIKDTASW-------------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
           FF     K   SW              T++  + +   +  +R +F  M   N +SW+A+
Sbjct: 263 FFSL--GKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTAL 320

Query: 108 ISGYIECGQLDKAVELF------KVAP----VKSVVAWTA-------------------- 137
           ISGY++  Q  +A++LF       V P      SV+   A                    
Sbjct: 321 ISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGL 380

Query: 138 ---------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                    +I+ Y + G ++ A K F+ +  KNL+++N       +   +++       
Sbjct: 381 STINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVE 440

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
             G+G  P   + + +L G + + ++  G+Q+H L+ KS    +      LISMY KCG+
Sbjct: 441 HTGVGASP--FTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGN 498

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
            E A ++F ++  ++V+TW ++ISG+A+HG   KAL LF +M + G+KP+ +T++A+L A
Sbjct: 499 KEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSA 558

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H GL+D   ++F+SM  ++ I+ + +HY CMVDLLGR+G L+EA++ I  MPF     
Sbjct: 559 CSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADAL 618

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++ T L +CRVH+   L E AA  +    P + A  Y+ L+N+YA+  +WDDVA +R SM
Sbjct: 619 VWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPAT-YILLSNLYASEGRWDDVAALRKSM 677

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           K+  ++K  GYSWIEV   VH+F  GD  HP+   I+++L EL  ++K  GY+P+ +F L
Sbjct: 678 KQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVL 737

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
           H V +E KEQ L  HSEK+A+A+ LI  P   PIRVFKNLRVCGDCH A KYIS +  RE
Sbjct: 738 HDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGRE 797

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I+VRD  RFHH KDG CSC DYW
Sbjct: 798 IVVRDANRFHHIKDGKCSCNDYW 820



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 128/266 (48%), Gaps = 17/266 (6%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPE-------KNSVSWSAMISG-----YIECG 115
           +D  SW+ +IS F      ++A   FL M +        N   ++A++       +   G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 116 QLDKAVELFKVAPVKS-VVAWTAMISGYMKFG-KVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            L     L K     S V    A+I  + K G  +  A  +FD+M  KNLVTW  MI  Y
Sbjct: 165 -LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRY 223

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    +D + L   ++     P+  +L+S+L  C  L    LGKQ+H  V +S L  D 
Sbjct: 224 SQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY K   +E++ K+F  +   +V++W A+ISGY Q  + ++A++LF  M   
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 294 GMKPDSITFVALLLACNHAGLVDLGI 319
            + P+  TF ++L AC  A L D GI
Sbjct: 344 HVTPNCFTFSSVLKAC--ASLPDFGI 367



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 9/260 (3%)

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM--PTKNLVTW 166
           SG +E G+L     +    P+ SV+   ++I+ Y K G  + A  +F  M    ++LV+W
Sbjct: 52  SGNLELGKLLHHKLIDSGLPLDSVL-LNSLITLYSKCGDWENALSIFRNMGHHKRDLVSW 110

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLG---IRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           +A+I+ +  NS     L     M+      I PN    +++L  CS+      G  +   
Sbjct: 111 SAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAF 170

Query: 224 VFKSPLCKDTTAL-TPLISMYCKCG-DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
           + K+        +   LI M+ K G D++ A  +F ++Q K++VTW  MI+ Y+Q G  +
Sbjct: 171 LLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLD 230

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
            A+ LF ++      PD  T  +LL AC       LG Q   S V   G+A+       +
Sbjct: 231 DAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGLASDVFVGCTL 289

Query: 342 VDLLGRAGKLVEAVDLIKKM 361
           VD+  ++  +  +  +   M
Sbjct: 290 VDMYAKSAAVENSRKIFNTM 309


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 343/617 (55%), Gaps = 49/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M  +  V+WN+++AG++ Q G  + A E+ + + + ++    I +  +L           
Sbjct: 196 MPERDLVSWNTIVAGYS-QNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRI 254

Query: 50  ---LNSDDVVAAFD------------------------FFQRLPIKDTASWNTMISGFVQ 82
              ++   + A FD                         F  +  ++  SWN+MI  +VQ
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVA 134
            +N  +A  +F  M ++      VS    +    + G L++   + K++      ++V  
Sbjct: 315 NENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSV 374

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             ++IS Y K  +VD A  +F ++ ++ +V+WNAMI G+ +N    + L     M    +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTV 434

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P+  +  SV+   + LS     K +H +V ++ L K+    T L+ MY KCG +  A  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  +  + V TWNAMI GY  HG G+ AL LF++M+   ++P+ +TF++++ AC+H+GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGL 554

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V+ G++ F  M  +Y I    DHY  MVDLLGRAG+L EA D I +MP KP   ++G +L
Sbjct: 555 VEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            AC++HK ++ AE  A  LF LNP +  G +V LANIY A   W+ V ++R+SM    + 
Sbjct: 615 GACQIHKNVNFAEKVAERLFELNPED-GGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG S +E+   VH F SG   HP    I+  L++L  ++K AGYVPD    L  + ++
Sbjct: 674 KTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDD 732

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           VKEQLL  HSEKLAI+FGL+    GT I V KNLRVC DCH ATKYIS +  REIIVRD 
Sbjct: 733 VKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDM 792

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFK+G CSCGDYW
Sbjct: 793 QRFHHFKNGACSCGDYW 809



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 39/282 (13%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVAPV 129
           ++S F +  ++ +A  +F  + +K +V +  M+ G+ +   LDKA++ F      +V PV
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134

Query: 130 ----------------------------KS-----VVAWTAMISGYMKFGKVDLAEKLFD 156
                                       KS     + A T + + Y K  +V  A K+FD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFD 194

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            MP ++LV+WN ++AGY +N  A   L+++ +M    ++P+  ++ SVL   S L  +++
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRI 254

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           GK++H    ++         T L+ MY KCG L+ A  LF  +  ++VV+WN+MI  Y Q
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +   ++A+ +F KM DEG+KP  ++ +  L AC   G ++ G
Sbjct: 315 NENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 129/247 (52%), Gaps = 17/247 (6%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +FK    +  +  T ++S + ++G VD A ++F+ +  K  V +  M+ G+ + S  +  
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           LK    M    + P   + + +L  C   + L++GK++H L+ KS    D  A+T L +M
Sbjct: 120 LKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KC  + +A K+F  +  +D+V+WN +++GY+Q+G    AL + + M +E +KP  IT 
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITI 239

Query: 303 VALLLACNHAGLVDLGIQY--------FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           V++L A +   L+ +G +         FDS+VN   IA      T +VD+  + G L  A
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN---IA------TALVDMYAKCGSLKTA 290

Query: 355 VDLIKKM 361
             L   M
Sbjct: 291 RLLFDGM 297



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           SSL+  + +  L+FK+ L ++    T L+S++C+ G +++A ++F  I +K  V +  M+
Sbjct: 48  SSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTML 107

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
            G+A+    +KAL+ F +M+D+ ++P    F  LL  C     + +G +    +V   G 
Sbjct: 108 KGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GF 166

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +      T + ++  +  ++ EA  +  +MP
Sbjct: 167 SLDLFAMTGLENMYAKCRQVHEARKVFDRMP 197


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 314/522 (60%), Gaps = 9/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIE 113
           A++ F  +   +  +WNT+I G+ +  N + A    R + ++  E ++ ++  ++    +
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 114 CGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              + +   +  V         V    +++  Y   G  + A K+F+ M  ++LV WN+M
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I G+  N    + L L R M   G+ P+  ++ S+L   + L +L+LG++VH  + K  L
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGL 250

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            K++     L+ +Y KCG + +A ++F E+  ++ V+W ++I G A +G GE+AL LF +
Sbjct: 251 SKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKE 310

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+ +G+ P  ITFV +L AC+H G++D G +YF  M  + GI  + +HY CMVDLL RAG
Sbjct: 311 MEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAG 370

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            + +A + I+ MP +P   I+ TLL AC +H  L L E A  +L NL P + +G YV L+
Sbjct: 371 LVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKH-SGDYVLLS 429

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YA+ ++W DV  IR SM ++ V K PGYS +E+G  V+EF  GDR HP+   ++  L+
Sbjct: 430 NLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLE 489

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           ++ + +KL GYVP     L  + EE KEQ L +HSEK+AIAF L+  P GTPIRV KNLR
Sbjct: 490 KITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLR 549

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH A K I+ I  REI++RD +RFHHF+ G+CSC DYW
Sbjct: 550 VCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           D  +A+  F+ +  +D  +WN+MI+GF       +A  LF  M     E +  +  +++S
Sbjct: 168 DTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLS 227

Query: 110 GYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
              E G L+      V L KV   K+     +++  Y K G +  A+++F EM  +N V+
Sbjct: 228 ASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVS 287

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W ++I G   N + E+ L+L + M G G+ P+  +   VL  CSH   L  G +  + + 
Sbjct: 288 WTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRM- 346

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKL----FLEIQ----RKDVVTWNAMISGYAQH 277
                K+   + P I  Y    DL     L    +  IQ    + + V W  ++     H
Sbjct: 347 -----KEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIH 401

Query: 278 G 278
           G
Sbjct: 402 G 402



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 30/239 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPD---VVSYNIMLSCILLNSD 53
           M  +  V WNS++ GFA   G+  +A  LF ++     +PD   VVS        LL++ 
Sbjct: 179 MKERDLVAWNSMINGFALN-GRPNEALTLFREMSVEGVEPDGFTVVS--------LLSAS 229

Query: 54  DVVAAFDFFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
             + A +  +R+ +        K++   N+++  + +   + +A+ +F  M E+N+VSW+
Sbjct: 230 AELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWT 289

Query: 106 AMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           ++I G    G  ++A+ELFK       V S + +  ++      G +D   + F  M  +
Sbjct: 290 SLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEE 349

Query: 162 NLVTWNAMIAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             +       G + +  +  GL  +    +  + ++PNA    ++L  C+    L LG+
Sbjct: 350 CGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGE 408


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 317/535 (59%), Gaps = 12/535 (2%)

Query: 48  ILLNSDDVVA-AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSV 102
           +L N  D +  A   F  +P ++  SW  MIS + Q+    +A +LF+ M     E N  
Sbjct: 105 VLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHF 164

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +++ +++        +   ++  +A  ++    +   ++++  Y K G++  A  +F  +
Sbjct: 165 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 224

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P +++V   A+I+GY +    E+ LKL R +   G+  N+ + +SVL   S L++L  GK
Sbjct: 225 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGK 284

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           QVH  V +S        L  LI MY KCG++  A ++F  +  +  ++WNAM+ GY++HG
Sbjct: 285 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 344

Query: 279 KGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPD 336
              + L LF  M++E  +KPDSIT++A+L  C+H  L D+G++ F +MVN   GI     
Sbjct: 345 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 404

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY C+VDLLGRAG++ EA D IKKMPF P  AI+G+LL +CRVH  +++       L  L
Sbjct: 405 HYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLEL 464

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P NA G YV L+N+YA+  KW+D+  IR  M+E  V K PG SW+E+  +VH F + D 
Sbjct: 465 EPENA-GNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDH 523

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
            HP    +  K+KEL  + K  GYVPDL   L+ V EE KE++LL HSEKLA+AFGLI  
Sbjct: 524 THPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIAT 583

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           P GT IRV KNLR+C DCH   K++S +  R +I+RD  RFH+   G CSCGDYW
Sbjct: 584 PEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + K   + SV   T +I  Y K   +  A  +FDEMP +N+V+W AMI+ Y +  +A 
Sbjct: 86  THMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAF 145

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + L L   M+     PN  + +++L  C      + G+Q+H +  K          + L+
Sbjct: 146 EALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLL 205

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY K G + DA  +F  +  +DVV   A+ISGYAQ G  E+AL+LF +++ EGM  +S+
Sbjct: 206 DMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSV 265

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+ ++L A +    ++ G Q   S V   G  +       ++D+  + G +  A  +   
Sbjct: 266 TYASVLTALSGLAALNHGKQ-VHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDS 324

Query: 361 MP 362
           MP
Sbjct: 325 MP 326



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 14/184 (7%)

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           LL+M I LG         S+L  C    +++ G++VH  + K+         T LI +Y 
Sbjct: 50  LLQMAI-LGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYN 108

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KC  L DA  +F E+ +++VV+W AMIS Y+Q G   +AL LF +M     +P+  TF  
Sbjct: 109 KCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFAT 168

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM------VDLLGRAGKLVEAVDLI 358
           +L +C        G   F++    + IA K ++ + M      +D+  ++G++ +A  + 
Sbjct: 169 ILTSC-------YGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF 221

Query: 359 KKMP 362
             +P
Sbjct: 222 HCLP 225



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 19/215 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +S+L  +AK  G++ DA  +F  +P+ DVV+   ++S       D   A   F++L I+ 
Sbjct: 202 SSLLDMYAKS-GRICDAHGVFHCLPERDVVACTAIISGYAQMGLD-EEALKLFRQLQIEG 259

Query: 70  T-------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAV 121
                   AS  T +SG     +  +     L   + + V   +++I  Y +CG +  A 
Sbjct: 260 MNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYAR 319

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-----TWNAMIAGYVEN 176
            +F   P ++ ++W AM+ GY K G      +LF  M  +N V     T+ A+++G    
Sbjct: 320 RIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHG 379

Query: 177 SWAEDGLKLLRMMIGL--GIRPNASSLSSV--LLG 207
              + GL++   M+    GI P+      V  LLG
Sbjct: 380 QLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLG 414


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/486 (41%), Positives = 310/486 (63%), Gaps = 11/486 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V W +++ G+ +   K+ DA++LF+++P  +VVS+N M+     N   + +A   F+
Sbjct: 128 KNVVTWTAMVGGYIRS-NKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGR-IDSAMYLFE 185

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           ++P ++  SWNT++S   Q   + +AR LF  MPE++ +SW+AMI+G      LD+A++L
Sbjct: 186 KMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL-----LDEALDL 240

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F+  P + + +W  MI+G ++ G +  A KLF+EMP KN+++W  MI G V+   +E+ L
Sbjct: 241 FERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEAL 300

Query: 184 KLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           K+  RM+   G +PN  +  SVL  CS+L+ L  G+QVHQ++ K+     T  ++ LI+M
Sbjct: 301 KIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINM 360

Query: 243 YCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           Y KCG+L  A K+F +    ++D+V+WN +I+ YA HG G++A+  F +M+  G KPD +
Sbjct: 361 YSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDV 420

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+V LL AC+HAGLV+ G++YFD +V D  I  + DHY C+VDL GRAG+L EA   I++
Sbjct: 421 TYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIER 480

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           +  KP   ++G LL+ C VH  + + + AA  L  + P N AG Y+ L+NIYA+  KW +
Sbjct: 481 LETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPEN-AGTYLLLSNIYASTGKWRE 539

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
            AR+RL MK+  + K PG SWIEVG  VH F  GD+ H +   I+  L++L  +MK AGY
Sbjct: 540 AARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGY 599

Query: 481 VPDLEF 486
            P+ +F
Sbjct: 600 EPNNDF 605



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 59/366 (16%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVA 127
           + A  N MI+   +   + +AR LF  M E + ++W+ +ISGYI+CG +++A  LF +V 
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             K+VV WTAM+ GY++  K+  AEKLF+EMP KN+V+WN MI GY +N   +  + L  
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFE 185

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQ--------------------LGKQVHQLVFKS 227
            M    +  + +++ S+L  C  +   +                    L  +   L  + 
Sbjct: 186 KMPERNV-VSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERM 244

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
           P  +D  +   +I+   + GDL  A KLF E+ +K+V++W  MI+G  Q G+ E+AL++F
Sbjct: 245 PE-RDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIF 303

Query: 288 DKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ---------YFDS------MVNDY-- 329
            +M    G KP+  TFV++L AC++   +  G Q         Y DS      ++N Y  
Sbjct: 304 SRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSK 363

Query: 330 ----GIAAK--PDHYTCMVDLLGRAGKLV---------EAVDLIKKM---PFKPQPAIFG 371
               G A K   D  T   DL+   G +          EA++  K+M    FKP    + 
Sbjct: 364 CGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYV 423

Query: 372 TLLSAC 377
            LLSAC
Sbjct: 424 GLLSAC 429


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/653 (35%), Positives = 361/653 (55%), Gaps = 85/653 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----------PQPDVVSYNIM------ 44
           + ++ +++WNS+++ +++ RG    A +LF  +          P      ++++      
Sbjct: 264 IGIRNSISWNSIISVYSR-RGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRK 322

Query: 45  -----------------------LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
                                  L  +   S  +  A   F+ +  KD+ SWN++ISG  
Sbjct: 323 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 382

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC-GQLDKAVELF---------------- 124
           Q +    A ++F  MPE + VSW+++I    +    + +AV+ F                
Sbjct: 383 QNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFI 442

Query: 125 -----------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-T 160
                                  K           A++S Y K G+++  EK+F  M  T
Sbjct: 443 NILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSET 502

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++ V+WN+MI+GY+ N      + L+  M+  G R ++ + +++L  C+ +++L+ G +V
Sbjct: 503 RDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEV 562

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H    ++ L  D    + L+ MY KCG ++ A + F  +  ++V +WN+MISGYA+HG G
Sbjct: 563 HACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHG 622

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           EKAL+LF +M  +G  PD +TFV +L AC+H G V+ G ++F SM   Y ++ + +H++C
Sbjct: 623 EKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSC 682

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA-CRVHKR-LDLAEFAAMNLFNLNP 398
           MVDLLGRAGKL E  D I  MP KP   I+ T+L A CR + R  +L   AA  L  L P
Sbjct: 683 MVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEP 742

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
            NA   YV LAN+YA+ +KW+DVA+ R +MKE  V K  G SW+ +   VH F +GD++H
Sbjct: 743 QNAVN-YVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLH 801

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           PE   I++KL+EL ++M+ AGY+P  ++AL  +  E KE+LL +HSEK+A+AF L +   
Sbjct: 802 PEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQS- 860

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             PIR+ KNLRVCGDCH A  YIS I  R+I++RD+ RFHHF+DG CSCGDYW
Sbjct: 861 ALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 175/357 (49%), Gaps = 23/357 (6%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF---QRLPIKDTASWNTMISGF 80
            DA+ +FD I   + +S+N ++S +     D V+A+D F   Q+  +  +   N   S F
Sbjct: 255 NDARSVFDGIGIRNSISWNSIIS-VYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEF 313

Query: 81  -VQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
            V ++   K R++        + +      + +++ Y + G +  A  +F++   K  V+
Sbjct: 314 SVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVS 373

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY--VENSWAEDGLKLLRMMIGL 192
           W ++ISG  +    + A ++F  MP  + V+WN++I      E S ++     L+MM G 
Sbjct: 374 WNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG- 432

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G   +  +  ++L   S LS  ++  Q+H LV K  L  DT     L+S Y KCG++ + 
Sbjct: 433 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 492

Query: 253 CKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
            K+F  + + +D V+WN+MISGY  +    KA+ L   M  +G + DS TF  +L AC  
Sbjct: 493 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACAS 552

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              ++ G++     V+  GI A  +      + +VD+  + G++  A    + MP +
Sbjct: 553 VATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 604



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 17/274 (6%)

Query: 100 NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
           +S ++ ++I+ Y      ++A EL     K   V ++     +I+ Y++ G +  A+KLF
Sbjct: 98  SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLF 157

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLSS 213
           DEM  +NLVTW  +I+GY +N   ++     R M+  G  PN  +  S L  C  S  S 
Sbjct: 158 DEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG 217

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQRKDVVTWNAMIS 272
            +LG Q+H L+ K+    D      LISMY  C D   DA  +F  I  ++ ++WN++IS
Sbjct: 218 CKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIIS 277

Query: 273 GYAQHGKGEKALRLFDKMKDEGM----KP-DSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            Y++ G    A  LF  M+ EG+    KP D+ +  ++L      G  ++      + +N
Sbjct: 278 VYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGR-EVHAHVIRTGLN 336

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           D  +A        +V++  ++G + +A  + + M
Sbjct: 337 DNKVAIGNG----LVNMYAKSGAIADACSVFELM 366



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 141/307 (45%), Gaps = 31/307 (10%)

Query: 42  NIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMISGFVQK----KNMAKARDLF 93
           N+ LS  L+N      D+ +A   F  +  ++  +W  +ISG+ Q     +  A+ RD+ 
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 94  LAMPEKNSVSWSAMISGYIECG----QLDKAVE--LFKVAPVKSVVAWTAMISGYMK-FG 146
            A    N  ++ + +    E G    +L   +   + K      VV    +IS Y     
Sbjct: 193 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 252

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM----IGLGIRPN-ASSL 201
             + A  +FD +  +N ++WN++I+ Y     A     L   M    +G   +PN A S 
Sbjct: 253 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSE 312

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQ 260
            SVL         + G++VH  V ++ L  +  A+   L++MY K G + DAC +F  + 
Sbjct: 313 FSVL-----EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMV 367

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-GLVDLGI 319
            KD V+WN++ISG  Q+   E A  +F  M +     D +++ +++ A + +   V   +
Sbjct: 368 EKDSVSWNSLISGLDQNECSEDAAEMFSLMPEY----DQVSWNSVIGALSDSEASVSQAV 423

Query: 320 QYFDSMV 326
           +YF  M+
Sbjct: 424 KYFLQMM 430


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 336/585 (57%), Gaps = 26/585 (4%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            NS+L  + K R     A++LF  + + D VS+NIM+S   L   D+  + D F++LP KD
Sbjct: 427  NSILDYYVKCRC-FGYAEKLFGLMAEKDTVSWNIMMSS-YLQIGDMQKSVDLFRQLPGKD 484

Query: 70   TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSA--MISGYIECGQLDKAV-- 121
             ASWNTMI G ++      A +L   M    P  N +++S   +++  +    L K +  
Sbjct: 485  AASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHT 544

Query: 122  ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL---------------VTW 166
            ++ KV  +       ++I  Y K G+++ A  +F  +P ++                V+W
Sbjct: 545  QVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSW 604

Query: 167  NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++M++GYV+N   ED LK    MI   +  +  +L+SV+  C+    L+LG+QVH  + K
Sbjct: 605  SSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQK 664

Query: 227  SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                 D    + +I MY KCG L DA  +F + + ++VV W +MISG A HG+G +A+RL
Sbjct: 665  IGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRL 724

Query: 287  FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            F+ M +EG+ P+ ++FV +L AC+HAGL++ G +YF  M   YGI    +H+TCMVDL G
Sbjct: 725  FELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYG 784

Query: 347  RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
            RAG+L E  + I         +++ + LS+CRVHK +++  +    L  L P + AG Y+
Sbjct: 785  RAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFD-AGPYI 843

Query: 407  QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
              ++I A   +W++ A+IR  M++  V K P  SWI++   VH F  GDR HP+   I+ 
Sbjct: 844  LFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYS 903

Query: 467  KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
             L EL  R+K  GY  D+   +  V +E ++ LL +HSEKLAIA+G+I    GTPIRV K
Sbjct: 904  YLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMK 963

Query: 527  NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            NLRVC DCH   KY S +  REII+RD  RFHHFK G CSC DYW
Sbjct: 964  NLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 172/386 (44%), Gaps = 57/386 (14%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------ 99
           S ++  A   F+ +P  D  SW  +ISGF +    A    LF  M ++            
Sbjct: 334 SQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIV 393

Query: 100 ----------------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                                       ++V  ++++  Y++C     A +LF +   K 
Sbjct: 394 LKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKD 453

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            V+W  M+S Y++ G +  +  LF ++P K+  +WN MI G + N      L+LL  M+ 
Sbjct: 454 TVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVA 513

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G   N  + S  L+  S LS L LGKQ+H  V K  +  D      LI MYCKCG++E 
Sbjct: 514 AGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEK 573

Query: 252 ACKLFLEIQRK---------------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           A  +F  + ++               + V+W++M+SGY Q+G+ E AL+ F  M    ++
Sbjct: 574 ASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVE 633

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            D  T  +++ AC  AG+++LG Q     +   G        + ++D+  + G L +A  
Sbjct: 634 VDKFTLTSVVSACASAGVLELGRQ-VHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAW- 691

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKR 382
           LI          ++ +++S C +H +
Sbjct: 692 LIFNQAKDRNVVLWTSMISGCALHGQ 717



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K   ++ A K+F+E+P  ++ +W  +I+G+     + D L L   M   G+ PN  +L
Sbjct: 331 YAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTL 390

Query: 202 SSVLLGCS-HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           S VL  CS +++  ++GK +H  + ++ L  D      ++  Y KC     A KLF  + 
Sbjct: 391 SIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMA 450

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            KD V+WN M+S Y Q G  +K++ LF ++
Sbjct: 451 EKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 117/284 (41%), Gaps = 64/284 (22%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +   L++A ++F+  P   V +WT +ISG+ + G                        
Sbjct: 331 YAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIG------------------------ 366

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPL 229
                   + D L L   M   G+ PN  +LS VL  C S+++  ++GK +H  + ++ L
Sbjct: 367 -------LSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGL 419

Query: 230 ----------------C---------------KDTTALTPLISMYCKCGDLEDACKLFLE 258
                           C               KDT +   ++S Y + GD++ +  LF +
Sbjct: 420 DLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQ 479

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  KD  +WN MI G  ++G    AL L  KM   G   + +TF   L+  +   ++ LG
Sbjct: 480 LPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLG 539

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            Q   + V   G+         ++D+  + G++ +A  + K +P
Sbjct: 540 KQ-IHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLP 582



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 38/194 (19%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+++Y K  +LE A K+F EI + DV +W  +ISG+A+ G     L LF KM+D+G+ P+
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 299 SITFVALLLACN------------HAGLVDLGIQYFDSMVND------------------ 328
             T   +L +C+            H  ++  G+   D+++N+                  
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLD-LDAVLNNSILDYYVKCRCFGYAEKL 445

Query: 329 YGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA----IFGTLLSAC-RVHK 381
           +G+ A+ D   +  M+    + G + ++VDL +++P K   +    I G + + C RV  
Sbjct: 446 FGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVAL 505

Query: 382 RLDLAEFAAMNLFN 395
            L     AA   FN
Sbjct: 506 ELLYKMVAAGPAFN 519


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 310/510 (60%), Gaps = 13/510 (2%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           WNT+I G+ +  N   A  L+  M      E ++ ++  +I        +     +  V 
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 128 PVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
            ++S     +    +++  Y   G V  A K+FD+MP K+LV WN++I G+ EN   E+ 
Sbjct: 148 -IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L L   M   GI+P+  ++ S+L  C+ + +L LGK+VH  + K  L ++  +   L+ +
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSIT 301
           Y +CG +E+A  LF E+  K+ V+W ++I G A +G G++A+ LF  M+  EG+ P  IT
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEIT 326

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FV +L AC+H G+V  G +YF  M  +Y I  + +H+ CMVDLL RAG++ +A + IK M
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM 386

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           P +P   I+ TLL AC VH   DLAEFA + +  L P N +G YV L+N+YA+ ++W DV
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEP-NHSGDYVLLSNMYASEQRWSDV 445

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
            +IR  M  + V K+PG+S +EVG  VHEF  GD+ HP+  +I+ KLKE+  R++  GYV
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           P +      V EE KE  +++HSEK+AIAF LI  P  +PI V KNLRVC DCH A K +
Sbjct: 506 PQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLV 565

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  REI+VRD +RFHHFK+G+CSC DYW
Sbjct: 566 SKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 3/213 (1%)

Query: 151 AEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGC 208
           A K+F ++    N+  WN +I GY E   +     L R M   G + P+  +   ++   
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + ++ ++LG+ +H +V +S           L+ +Y  CGD+  A K+F ++  KD+V WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           ++I+G+A++GK E+AL L+ +M  +G+KPD  T V+LL AC   G + LG +    M+  
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK- 250

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            G+         ++DL  R G++ EA  L  +M
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 118/250 (47%), Gaps = 23/250 (9%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSA 106
           N  DV +A+  F ++P KD  +WN++I+GF +     +A  L+  M  K    +  +  +
Sbjct: 168 NCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227

Query: 107 MISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           ++S   + G L       V + KV   +++ +   ++  Y + G+V+ A+ LFDEM  KN
Sbjct: 228 LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 287

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            V+W ++I G   N + ++ ++L + M    G+ P   +   +L  CSH   ++ G +  
Sbjct: 288 SVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYF 347

Query: 222 QLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG 273
           + +      ++   + P       ++ +  + G ++ A +    +  + +VV W  ++  
Sbjct: 348 RRM------REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGA 401

Query: 274 YAQHGKGEKA 283
              HG  + A
Sbjct: 402 CTVHGDSDLA 411



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V WNSV+ GFA + GK ++A  L+ ++    +      +   LL++   + A  
Sbjct: 182 MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMNSKGIKPDGFTIVS-LLSACAKIGALT 239

Query: 61  FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +R+ +        ++  S N ++  + +   + +A+ LF  M +KNSVSW+++I G  
Sbjct: 240 LGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299

Query: 113 ECGQLDKAVELFK 125
             G   +A+ELFK
Sbjct: 300 VNGFGKEAIELFK 312



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 252 ACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLAC 309
           A K+F +I++  +V  WN +I GYA+ G    A  L+ +M+  G+ +PD+ T+  L+ A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                V LG +   S+V   G  +       ++ L    G +  A  +  KMP K
Sbjct: 132 TTMADVRLG-ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK 185


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/536 (40%), Positives = 319/536 (59%), Gaps = 24/536 (4%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA-KARDLFLAM-----PEKNSVSWSA 106
           DD    FD   R+      SW  +I+G+++  N+A +A +LF  M      E N  ++S 
Sbjct: 322 DDCRKVFD---RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS- 377

Query: 107 MISGYIECGQL-DKAV------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
             S +  CG L D  V      + FK     +     ++IS ++K  +++ A++ F+ + 
Sbjct: 378 --SAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLS 435

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            KNLV++N  + G   N   E   KLL  +    +  +A + +S+L G +++ S++ G+Q
Sbjct: 436 EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ 495

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V K  L  +      LISMY KCG ++ A ++F  ++ ++V++W +MI+G+A+HG 
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             + L  F++M +EG+KP+ +T+VA+L AC+H GLV  G ++F+SM  D+ I  K +HY 
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
           CMVDLL RAG L +A + I  MPF+    ++ T L ACRVH   +L + AA  +  L+P 
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDP- 674

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
           N    Y+QL+NIYA   KW++   +R  MKE N+VK  G SWIEVG  +H+F  GD  HP
Sbjct: 675 NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHP 734

Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAV----GEEVKEQLLLFHSEKLAIAFGLIK 515
               I+++L  L   +K  GYVPD +  LH +     E  KE+LL  HSEK+A+AFGLI 
Sbjct: 735 NAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
                P+RVFKNLRVCGDCH A KYIS +  REI++RD  RFHHFKDG CSC DYW
Sbjct: 795 TSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 165/359 (45%), Gaps = 52/359 (14%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECG-QLDKA---V 121
           D+  +N++IS + +  + AKA D+F  M    +++ VSWSAM++ Y   G +LD     V
Sbjct: 96  DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155

Query: 122 ELFKVAPVKSVVAWTAMI-----SGYMKFGKVDL-------------------------- 150
           E  ++  V +   +TA+I     S ++  G+V L                          
Sbjct: 156 EFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKG 215

Query: 151 ------AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
                 A K+FD+M   N+VTW  MI   ++  +  + ++    M+  G   +  +LSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQR 261
              C+ L +L LGKQ+H    +S L  D      L+ MY KC   G ++D  K+F  ++ 
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 262 KDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGI 319
             V++W A+I+GY ++     +A+ LF +M  +G ++P+  TF +   AC +     +G 
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
           Q         G+A+       ++ +  ++ ++ +A    + +  K   +    L   CR
Sbjct: 394 QVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 47/284 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--SCILLNSDDVVAAFDFFQRLPI 67
           NSV++ F K   +++DAQ  F+ + + ++VSYN  L  +C  LN +    AF     +  
Sbjct: 412 NSVISMFVKS-DRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQ---AFKLLSEITE 467

Query: 68  KDTA----SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
           ++      ++ +++SG     ++ K   +   + +     N    +A+IS Y +CG +D 
Sbjct: 468 RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDT 527

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A  +F     ++V++WT+MI+G+ K G              + L T+N MI         
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHG-----------FAIRVLETFNQMIEE------- 569

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTP 238
                        G++PN  +  ++L  CSH+  +  G +  + +     +         
Sbjct: 570 -------------GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYAC 616

Query: 239 LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
           ++ + C+ G L DA +    +  + DV+ W   +     H   E
Sbjct: 617 MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTE 660


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/563 (39%), Positives = 330/563 (58%), Gaps = 15/563 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS-- 78
             L  A +LFD+IPQPD+  YN M+    ++    + +   F+ L I+D+  +    S  
Sbjct: 224 ASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSL-IRDSGYFPNRYSFV 282

Query: 79  --------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                   G   ++             + N    +A+I  + + G+++ A  +F  A  +
Sbjct: 283 FAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDR 342

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
              +W  MI  Y+  G + LA++LFDEM  +++V+W+ +IAGYV+     + L     M+
Sbjct: 343 DFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKML 402

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              ++PN  ++ S L  CS+L +L  GK +H  + +  +  +   L  LI MY KCG+++
Sbjct: 403 QSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEID 462

Query: 251 DACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            A  +F E + ++ V  WNAMI G+A HGK E+A+ +F+KMK E + P+ +TF+ALL AC
Sbjct: 463 SASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNAC 522

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H  +V  G  YF+ M +DYGI  + +HY CMVDLL R+G L ++ ++I  MP  P  AI
Sbjct: 523 SHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAI 582

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G LL+ACR++K ++        +  ++P N  GC V L NIY+   +W++   +R   +
Sbjct: 583 WGALLNACRIYKDMERGYRIGRIIKEIDP-NHIGCNVLLGNIYSTSGRWNEARMVREKNE 641

Query: 430 EN-NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL-EFA 487
            N +  K+PG+S IE+  V HEF  GDR HP+   I+  L E+  ++K+AGYVP+L E  
Sbjct: 642 INSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVL 701

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           L    EE KE  L  HSEKLAIAFGL+    GTPIR+ KNLRVCGDCH+ATK+IS +  R
Sbjct: 702 LDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDR 761

Query: 548 EIIVRDTTRFHHFKDGTCSCGDY 570
            IIVRD  R+HHFKDG CSC DY
Sbjct: 762 VIIVRDRMRYHHFKDGICSCKDY 784



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 147/313 (46%), Gaps = 25/313 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  F K  G+++DA+ +FD     D  S+N M+    + S ++V A + F  +  +D
Sbjct: 317 NALIGMFGKW-GRVEDARNVFDSAVDRDFYSWNTMIGA-YVGSGNMVLAKELFDEMHERD 374

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQL-----DKAVEL 123
             SW+T+I+G+VQ     +A D F  M +     +   M+S    C  L      K + +
Sbjct: 375 VVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHV 434

Query: 124 F----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-TWNAMIAGYVENSW 178
           +     +     ++A  ++I  Y K G++D A  +F E   K  V  WNAMI G+  +  
Sbjct: 435 YIRRDNIKMNDRLLA--SLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGK 492

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTT 234
            E+ + +   M    + PN  +  ++L  CSH   ++ GK   +L+      +P  +   
Sbjct: 493 PEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYG 552

Query: 235 ALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            +  L+S   + G L+D+ ++ L +    DV  W A+++    +   E+  R+   +K+ 
Sbjct: 553 CMVDLLS---RSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKE- 608

Query: 294 GMKPDSITFVALL 306
            + P+ I    LL
Sbjct: 609 -IDPNHIGCNVLL 620


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 333/591 (56%), Gaps = 42/591 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G   DA+  FD+IP  D V +  ++   L+    +  A     + P ++  SW ++I+G+
Sbjct: 154 GLTDDARRAFDEIPAKDAVVWATVIGG-LVRWGLLDEARRLLVQAPERNVVSWTSLIAGY 212

Query: 81  VQKKNMAKARDLFLAM------PEKNSVSWS----------------------------- 105
            +    A A   F  M      P++ +V  +                             
Sbjct: 213 SRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTD 272

Query: 106 ----AMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
               A+I  Y +CG + +A  +F  V   +    W A+I GY K G VD+A  LFD+M  
Sbjct: 273 NLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGA 332

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++++T+N+MI GY+ +    D L+L   M   G+R +  ++ S+L  C+ L +L  G+ +
Sbjct: 333 RDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRAL 392

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  + +  + +D    T L+ MY KCG +++A  +F  +  +DV TW AMI+G A +G G
Sbjct: 393 HASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMG 452

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           + AL  F +MK +G +P S+T++A+L AC+H+ L+D G  +F+ M + + +  + +HY C
Sbjct: 453 KDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGC 512

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           M+DLL R+G L EA+ L++ MP +P   I+G++LSACRVHK +DLA  AA +L  L P  
Sbjct: 513 MIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEE 572

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
            A  YVQL NIY   ++W D  R+R+ M+E  V K  GYS I V   VH+F + D+ HP 
Sbjct: 573 DA-VYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPW 631

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
            + I   ++E+  R+K  GY P        V EE KEQ LL HSEK+AIAFGLI +P   
Sbjct: 632 TLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSL 691

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PI + KNLRVC DCH A K +S +  REIIVRD +RFHHF+DG CSC D+W
Sbjct: 692 PIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 37/310 (11%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           M  A  L   +P    +  + +I  Y   G  D A   F   P K  V W  +I G +++
Sbjct: 125 MLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRW 184

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G +D A +L  + P +N+V+W ++IAGY       D +     M+  G+ P+  ++   L
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------- 252
             CS L +L LG+ +H LV +  +      +  LI MY KCGD+  A             
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKP 304

Query: 253 ----------CK---------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                     CK         LF ++  +DV+T+N+MI+GY   G+   AL+LF +M+  
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRH 364

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKL 351
           GM+ D+ T V+LL AC   G +  G     S+        + D Y  T ++D+  + G++
Sbjct: 365 GMRADNFTVVSLLTACASLGALPHGRALHASIEQRI---VEEDVYLGTALLDMYMKCGRV 421

Query: 352 VEAVDLIKKM 361
            EA  +  +M
Sbjct: 422 DEATAVFHRM 431


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 325/581 (55%), Gaps = 42/581 (7%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT-MISGFVQ 82
           K   E    +P P ++S  ++  C  L     + A+       IK     NT +I+ F+ 
Sbjct: 15  KPNTETTSLLPLPHLIS--LIPKCTTLKELKQIQAY------TIKTNYQNNTNVITKFIN 66

Query: 83  -------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-----VAPVK 130
                  K +M  A  LF  + + N V ++ M  GY       + +  F+     V+ VK
Sbjct: 67  FCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKVK 126

Query: 131 SVV-------------------AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           ++                        +I+ Y   G +D + ++FD++    +V +NA+I 
Sbjct: 127 ALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIM 186

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
               N+ A + L L R +  +G++P   ++  VL  C+ L SL LG+ +H+ V K    +
Sbjct: 187 SLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDR 246

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                T LI MY KCG L+DA  +F ++ ++D   W+A+I  YA HG G +A+ + ++MK
Sbjct: 247 YVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMK 306

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            E ++PD ITF+ +L AC+H GLV+ G +YF  M N+YGI     HY CMVDLLGRAG+L
Sbjct: 307 KEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRL 366

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA   I ++P KP P ++ TLLSAC  H  +++ +     +F L+ ++  G YV  +N+
Sbjct: 367 DEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSH-GGDYVIFSNL 425

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
            A   KWDDV  +R +M +   VK+PG S IEV  VVHEF +G+ VH    ++H  L EL
Sbjct: 426 CARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDEL 485

Query: 472 EKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
            K +K AGYVPD     +A + +E KE +L +HSEKLAI FGL+  P GT IRV KNLRV
Sbjct: 486 VKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 545

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH A K+IS I  R+II+RD  RFHHFKDG CSCGDYW
Sbjct: 546 CGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/468 (44%), Positives = 292/468 (62%), Gaps = 9/468 (1%)

Query: 107 MISGYIEC--GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           ++S Y +C  G L+ A +LF   P K  V    MI+ Y      + A K+F+ MP K++V
Sbjct: 19  ILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYF-----ESAYKVFELMPEKDIV 73

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WN++I G+  N    + L L + M   G+ P+  ++ S+L  C+ L++L LG++ H  +
Sbjct: 74  AWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYM 133

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 283
            K  L K+  A   L+ +Y KCG + +A K+F E+   ++VV+W ++I G A +G G++A
Sbjct: 134 VKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEA 193

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           L  F  M+ EG+ P  ITFV +L AC+H G+V+ G +YF  M   Y I  + +HY CMVD
Sbjct: 194 LEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVD 253

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAG L EA D I+ MP +P   I+ TLL AC +H  L L  FA   L  L P ++ G
Sbjct: 254 LLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDS-G 312

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            YV L+N+YA+ ++W DV  +R +M    V K PGYS +E+G  VHEF  GDR HP+  +
Sbjct: 313 DYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEA 372

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I++ L E+  ++KLAGYVP     L  + EE KE  L +HSEK+AIAF LI    GTPIR
Sbjct: 373 IYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIR 432

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KNLRVC DCH A K IS + +R+I+VRD +RFHHF+DG+CSC DYW
Sbjct: 433 IIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 78/305 (25%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+  A   F  +P KDT + +TMI+ + +      A  +F  MPEK+ V+W+++I+G+  
Sbjct: 30  DLNLACKLFDEMPHKDTVTLDTMITAYFES-----AYKVFELMPEKDIVAWNSVINGFAL 84

Query: 114 CGQLDKAVELF---------------------------------------KVAPVKSVVA 134
            G+ ++A+ L+                                       KV   K++ A
Sbjct: 85  NGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHA 144

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             A++  Y K G +  A K+FDEM   +N+V+W ++I G   N + ++ L+  + M   G
Sbjct: 145 NNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREG 204

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P+  +   VL  CSH   +  G +  + +      K+   + P I  Y    DL    
Sbjct: 205 LVPSEITFVGVLYACSHCGIVNEGFEYFKRM------KEQYDIVPRIEHYGCMVDLLGRA 258

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            L  E                            +D ++D  ++P+++ +  LL AC   G
Sbjct: 259 GLLKEA---------------------------YDYIQDMPLQPNAVIWRTLLGACTIHG 291

Query: 314 LVDLG 318
            + LG
Sbjct: 292 HLGLG 296


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/538 (39%), Positives = 315/538 (58%), Gaps = 35/538 (6%)

Query: 68   KDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQL-DKAV 121
            +  A WN +++G+ + +   +A  LF+ M  +     N+ ++++++   + C    DK  
Sbjct: 599  RTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEG 658

Query: 122  ---ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
                + K    K      A++  Y + G+V++++ +F  M  +++V+WN MI G +    
Sbjct: 659  IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718

Query: 179  AEDGLKLLRMMI------------------GLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
             +D L LL  M                   G+  +PN+ +L +VL GC+ L++L  GK++
Sbjct: 719  YDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEI 778

Query: 221  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
            H    K  L  D    + L+ MY KCG L  A ++F ++  ++V+TWN +I  Y  HGKG
Sbjct: 779  HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKG 838

Query: 281  EKALRLFDKMKDEG------MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            E+AL LF  M   G      ++P+ +T++A+  AC+H+G+VD G+  F +M   +G+  +
Sbjct: 839  EEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPR 898

Query: 335  PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLDLAEFAAMNL 393
             DHY C+VDLLGR+G++ EA +LI  MP        + +LL ACR+H+ ++  E AA +L
Sbjct: 899  GDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHL 958

Query: 394  FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
            F L P N A  YV ++NIY++   WD    +R  MKE  V K PG SWIE G  VH+F S
Sbjct: 959  FVLEP-NVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLS 1017

Query: 454  GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 513
            GD  HP+   +HE L+ L +RM+  GYVPD+   LH V +E KE +L  HSE+LAIAFGL
Sbjct: 1018 GDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGL 1077

Query: 514  IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +  P GT IRV KNLRVC DCH ATK IS I  REII+RD  RFHHF +GTCSCGDYW
Sbjct: 1078 LNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 176/358 (49%), Gaps = 28/358 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-AMISGYI 112
           D+ AA   F  +P +D  SWN+MI+   + +    +  LF  M  +N    S  ++S   
Sbjct: 382 DLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAH 441

Query: 113 ECGQLDKAVELFKVAPVKSV-------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            C  +   V L K     ++           A+++ Y + G+V+ A+ LF     K+LV+
Sbjct: 442 ACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVS 501

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN +I+   +N   E+ L  + +MI  G+RP+  +L+SVL  CS L  L++G+++H    
Sbjct: 502 WNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYAL 561

Query: 226 KS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           ++  L +++   T L+ MYC C   +    +F  + R+ V  WNA+++GYA++   ++AL
Sbjct: 562 RNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQAL 621

Query: 285 RLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHY- 338
           RLF +M  E    P++ TF ++L AC       +  + F      +G   K     D Y 
Sbjct: 622 RLFVEMISESEFCPNATTFASVLPAC-------VRCKVFSDKEGIHGYIVKRGFGKDKYV 674

Query: 339 -TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
              ++D+  R G++  +  +  +M  K     + T+++ C V  R D     A+NL +
Sbjct: 675 QNALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCGRYD----DALNLLH 727



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 2/204 (0%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           Q+   V  F  AP  SV    ++++ Y K G +  A ++FD++P ++ V+WN+MIA    
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTT 234
               E  L L R+M+   + P + +L SV   CSH+   ++LGKQVH    ++   +  T
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYT 470

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               L++MY + G + DA  LF     KD+V+WN +IS  +Q+ + E+AL     M  +G
Sbjct: 471 N-NALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 295 MKPDSITFVALLLACNHAGLVDLG 318
           ++PD +T  ++L AC+    + +G
Sbjct: 530 VRPDGVTLASVLPACSQLERLRIG 553



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 68/333 (20%)

Query: 62  FQRLPIKDTASWNTMISGFV---------------QKKNMAKARDLFL------AMPEK- 99
           F R+  +D  SWNTMI+G +               Q++      D F+       +P K 
Sbjct: 695 FGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKP 754

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLF 155
           NSV+   ++ G      L K  E+   A  +     V   +A++  Y K G ++LA ++F
Sbjct: 755 NSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVF 814

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG------IRPNASSLSSVLLGCS 209
           D+MP +N++TWN +I  Y  +   E+ L+L R+M   G      IRPN  +  ++   CS
Sbjct: 815 DQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACS 874

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
           H   +  G  +   +      K +  + P    Y        AC                
Sbjct: 875 HSGMVDEGLHLFHTM------KASHGVEPRGDHY--------AC---------------- 904

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-IQYFDSMVND 328
           ++    + G+ ++A  L + M     K D+  + +LL AC     V+ G I      V +
Sbjct: 905 LVDLLGRSGRVKEAYELINTMPSNLNKVDA--WSSLLGACRIHQSVEFGEIAAKHLFVLE 962

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             +A+   HY  M ++   AG   +A+ + KKM
Sbjct: 963 PNVAS---HYVLMSNIYSSAGLWDQALGVRKKM 992



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFK---SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  +VL   + +  L LGKQ+H  VFK   +P      A   L++MY KCGDL  A ++F
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVA-NSLVNMYGKCGDLTAARQVF 390

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-GLV 315
            +I  +D V+WN+MI+   +  + E +L LF  M  E + P S T V++  AC+H  G V
Sbjct: 391 DDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGV 450

Query: 316 DLGIQ 320
            LG Q
Sbjct: 451 RLGKQ 455


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 336/579 (58%), Gaps = 12/579 (2%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           +VK  V W +V++G AK  G L DA+ L  + P  +VV++  ++S     +     A D 
Sbjct: 167 SVKDVVAWTTVISGLAKM-GLLDDARRLLARAPVRNVVTWTGLISG-YSRAGRAAEAVDC 224

Query: 62  FQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGYIE 113
           F  +       D  +   M+S   Q K++     L + + +K  +       A+I  Y +
Sbjct: 225 FNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAK 284

Query: 114 CGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           CG   +A E+F  +   +    W AMI GY K G VD+A  LFD+M   +++T+N++I G
Sbjct: 285 CGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITG 344

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y+      + L L   M   G+  +  ++  +L   + L +L  G+ +H  + +  + +D
Sbjct: 345 YIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERD 404

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T L+ MY KCG +E+A   F ++  +DV TW+AMI G A +G G+ AL  F  MK 
Sbjct: 405 VYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKC 464

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G   +S+T++A+L AC+H+ L+D G  YFD M   + I  + +HY CM+DLLGR+G L 
Sbjct: 465 DGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLD 524

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA+DL++ MP +P   I+ ++LSACRVHK +DLA+ AA +L  L PA  A  YVQ+ NIY
Sbjct: 525 EAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDA-VYVQMYNIY 583

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
              ++W+D ++IR  M++  V K  GYS I V   VH+F  GDR HP++  I   ++E+ 
Sbjct: 584 IDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIG 643

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           +R+K AGY P        V EE KEQ LL HSEKLAIAFGL+ +    P+ + KNLRVC 
Sbjct: 644 RRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCE 703

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K IS +  REIIVRD +RFHHF+ G CSC D+W
Sbjct: 704 DCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
           +P    +  S +I  Y E G    A   F  A VK VVAWT +ISG  K G +D A +L 
Sbjct: 135 LPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLL 194

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
              P +N+VTW  +I+GY     A + +     M+  GI P+  ++  +L  C  L  L 
Sbjct: 195 ARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLN 254

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGY 274
            G  +H LV    +      +  LI MY KCGD   A ++F  + R +    WNAMI GY
Sbjct: 255 FGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGY 314

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            + G  + A  LFD+M+D     D ITF +L+    H G +   +  F  M   +G+ A 
Sbjct: 315 CKVGHVDIARSLFDQMEDH----DVITFNSLITGYIHGGRLREALLLFTKM-RRHGLGA- 368

Query: 335 PDHYTCMVDLLGRAGKL 351
            D++T MV LL  +  L
Sbjct: 369 -DNFT-MVGLLTASASL 383



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 38/253 (15%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A  LFD MP    +   A+ A +  +S  +  + L R M G+ + P+A +   +   C+ 
Sbjct: 56  ALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCAR 115

Query: 211 LSS-LQLGKQVHQLVFK-----------SPL---------------------CKDTTALT 237
             + + LG+ +H   F+           SP+                      KD  A T
Sbjct: 116 GGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWT 175

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            +IS   K G L+DA +L      ++VVTW  +ISGY++ G+  +A+  F+ M  +G+ P
Sbjct: 176 TVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAP 235

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL---GRAGKLVEA 354
           D +T + +L AC     ++ G      +V D  +         ++D+    G  G+  E 
Sbjct: 236 DEVTVIGMLSACGQLKDLNFGCS-LHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREV 294

Query: 355 VDLIKKMPFKPQP 367
            D + +    PQP
Sbjct: 295 FDALGR-GRGPQP 306


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 349/601 (58%), Gaps = 55/601 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML------SCILLNSDDVVAAFDFFQRLPIK-DTASW 73
           G++ DA+++FD++ + DVV+ + +L       C+    ++VV      ++  I+ +  SW
Sbjct: 165 GRMGDARKVFDRMSEKDVVTCSALLCGYARKGCL----EEVVRILSEMEKSGIEPNIVSW 220

Query: 74  NTMISGFVQKKNMAKARDLFLAM------PEKNSVS------------------------ 103
           N ++SGF +     +A  +F  M      P++ +VS                        
Sbjct: 221 NGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIK 280

Query: 104 ---------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
                     SAM+  Y + G +   ++LF    +       A I+G  + G VD A ++
Sbjct: 281 QGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEM 340

Query: 155 F----DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           F    ++    N+V+W ++IAG  +N    + L+L R M   G++PN  ++ S+L  C +
Sbjct: 341 FGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGN 400

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           +++L  G+  H    +  L  D    + LI MY KCG ++ +  +F  +  K++V WN++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSL 460

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           ++GY+ HGK ++ + +F+ +    +KPD I+F +LL AC   GL D G +YF+ M  +YG
Sbjct: 461 MNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYG 520

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           I  + +HY+CMV+LLGRAGKL EA DLIK++PF+P   ++G LL++CR+   +DLAE AA
Sbjct: 521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAA 580

Query: 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
             LF+L P N  G YV ++NIYAA   W +V  IR  M+   + K PG SWI+V   V+ 
Sbjct: 581 QKLFHLEPEN-PGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYT 639

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
             + D+ HP++  I EK+ E+ + M+ +G+ P+L+FAL  V E+ +EQ+L  HSEKLA+ 
Sbjct: 640 LLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVV 699

Query: 511 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
           FGL+  P GTP++V KNLR+CGDCH   K+IS+   REI +RDT RFHHFKDG CSCGD+
Sbjct: 700 FGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDF 759

Query: 571 W 571
           W
Sbjct: 760 W 760



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 171/394 (43%), Gaps = 59/394 (14%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
             DA  +   IP P V S++ ++  +    L S  +      F    I DT     +   
Sbjct: 66  FNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFK- 124

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSVVA 134
              + +  KA      +   + +   A + G     Y+ CG++  A ++F     K VV 
Sbjct: 125 VCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVT 184

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            +A++ GY + G ++   ++  EM       N+V+WN +++G+  + + ++ + + + M 
Sbjct: 185 CSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMH 244

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            LG  P+  ++SSVL       +L +G+Q+H  V K  L KD   ++ ++ MY K G + 
Sbjct: 245 HLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVY 304

Query: 251 DACKLFLEIQ-----------------------------------RKDVVTWNAMISGYA 275
              KLF E +                                     +VV+W ++I+G A
Sbjct: 305 GIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCA 364

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-----GLVDLGIQYFDSMVNDYG 330
           Q+GK  +AL LF +M+  G+KP+ +T  ++L AC +      G    G      +++D  
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVH 424

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +       + ++D+  + G++  +  +   MP K
Sbjct: 425 VG------SALIDMYAKCGRIKMSQIVFNMMPTK 452



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 3/202 (1%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I+ Y  +   + A+ +   +P   + +++++I    +       + +   M   G+ P+
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              L ++   C+ LS+ + GKQ+H +   S L  D      L  MY +CG + DA K+F 
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFD 175

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  KDVVT +A++ GYA+ G  E+ +R+  +M+  G++P+ +++  +L   N +G    
Sbjct: 176 RMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKE 235

Query: 318 GIQYFDSMVNDYGIAAKPDHYT 339
            +  F  M   + +   PD  T
Sbjct: 236 AVIMFQKM---HHLGFCPDQVT 254


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/471 (44%), Positives = 286/471 (60%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++IS Y  CG L  A ++F   P   + +W ++I+   + G VD+A  LF  MP +N++
Sbjct: 103 TSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVI 162

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGI---RPNASSLSSVLLGCSHLSSLQLGKQVH 221
           +W+ MI GYV     ++ L L R M  LG+   RPN  ++S VL  C  L +L+ GK  H
Sbjct: 163 SWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAH 222

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
             + K  +  D    T LI MY KCG +E A  +F  +   KDV+ W+AMISG A HG  
Sbjct: 223 AYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLA 282

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           E+ + LF KM ++G++P+++TF+A+  AC H GLV  G  Y   M  DY I     HY C
Sbjct: 283 EECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGC 342

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDL GRAG++ EA +++K MP +P   ++G LLS  R+H  ++  E A   L  L P N
Sbjct: 343 MVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTN 402

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
           + G YV L+N+YA   +W+DV  +R  M+   + K+PG S IEVG V+HEF  GD  HPE
Sbjct: 403 S-GAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPE 461

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              IH  L+E+ +R+K+ GYV + +  L  + EE KE  L  HSEKLA+A+G +K   GT
Sbjct: 462 TRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGT 521

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           PIR+ KNLR+C DCH A K IS +  REIIVRD  RFHHF  G CSC DYW
Sbjct: 522 PIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 25/280 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+++FD+IPQPD+ S+N +++     +  V  A + F  +P ++  SW+ MI+G+
Sbjct: 113 GNLGFARQVFDEIPQPDLPSWNSIINAN-FQAGLVDMARNLFAVMPERNVISWSCMINGY 171

Query: 81  VQKKNMAKARDLFLAMP-------EKNSVSWSAMISGYIECGQLDKAVELFKVA------ 127
           V+     +A  LF  M          N  + S +++    CG+L  A+E  K A      
Sbjct: 172 VRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAA---CGRLG-ALEHGKWAHAYIDK 227

Query: 128 ---PVKSVVAWTAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGL 183
              PV  V+  TA+I  Y K G V+ A  +F  + P K+++ W+AMI+G   +  AE+ +
Sbjct: 228 CGMPVDVVLG-TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECV 286

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISM 242
            L   MI  G+RPNA +  +V   C H   +  GK  + ++     +         ++ +
Sbjct: 287 GLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDL 346

Query: 243 YCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 281
           Y + G +++A  +   +    DV+ W A++SG   HG  E
Sbjct: 347 YGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 40/261 (15%)

Query: 159 PTKNLVTWNAMIAGYVENSWAEDG-----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           PT     WN +I  +V+      G     + +   M   G++P+  +   +L   +  S 
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD---------- 263
           L LG+ VH  + +  L  D    T LISMY  CG+L  A ++F EI + D          
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 264 ---------------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPDS 299
                                V++W+ MI+GY + G+ ++AL LF +M+  G   ++P+ 
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            T   +L AC   G ++ G ++  + ++  G+       T ++D+  + G + +A  +  
Sbjct: 200 FTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 360 KMPFKPQPAIFGTLLSACRVH 380
            +        +  ++S   +H
Sbjct: 259 NLGPNKDVMAWSAMISGLAMH 279


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/631 (36%), Positives = 339/631 (53%), Gaps = 80/631 (12%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR-------------- 64
           + G +++A ++FD   + +VV +N+ML       DD+  +FD F R              
Sbjct: 291 KSGDIEEALQIFDSGDRTNVVLWNLML-VAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYP 349

Query: 65  --------------------LPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEK 99
                               L IK+    +  +SG     + +   + KA+ +   + EK
Sbjct: 350 CMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK 409

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK--------------------VAPVKSV------- 132
           + VSW++MI+GY++     +A+E FK                     A +K+V       
Sbjct: 410 DVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIH 469

Query: 133 ------------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                         W  ++  Y + G    A   F+ +  K  +TWN +I+G+ ++   E
Sbjct: 470 ARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYE 529

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + LK+   M   G + N  +  S +   ++L+ ++ GKQ+H  V K+    +T     LI
Sbjct: 530 EALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALI 589

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           S+Y KCG +EDA   F E+ +++ V+WN +I+  +QHG+G +AL LFD+MK +G+KP  +
Sbjct: 590 SLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDV 649

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFV +L AC+H GLV+ G+ YF SM N++GI  +PDHY C+VD+LGRAG+L  A   +++
Sbjct: 650 TFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEE 709

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP      ++ TLLSAC+VHK L++ EFAA +L  L P ++A  YV L+N YA   KW  
Sbjct: 710 MPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSAS-YVLLSNAYAVTGKWAS 768

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
             +IR  MK+  V K PG SWIEV  VVH F  GDR+HP    I+  L  L  R+   GY
Sbjct: 769 RDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGY 828

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
             +     H   +E K+     HSEKLA+AFGL+ +P   P+RV KNLRVC DCH   K+
Sbjct: 829 KQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKF 888

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            S +  REI++RD  RFHHF +G+CSCGDYW
Sbjct: 889 TSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 193/400 (48%), Gaps = 29/400 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L+  ++L   + +  +    IM   +L   + S D+  A   F      +   WN M+
Sbjct: 258 GDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLML 317

Query: 78  SGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
             + Q  ++AK+ D+F  M       N  ++  M+      G++    ++  +  +K+  
Sbjct: 318 VAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLT-IKNGF 376

Query: 134 AWTAMISG-----YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                +SG     Y K+G +D A+++ D +  K++V+W +MIAGYV++ + ++ L+  + 
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   GI P+   L+S +  C+ + ++  G Q+H  V+ S    D +    L+ +Y +CG 
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGI 496

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
            ++A   F  I+ K+ +TWN +ISG+AQ G  E+AL++F KM   G K +  TFV+ + A
Sbjct: 497 SKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF----K 364
             +   +  G Q    ++   G  ++ +    ++ L G+ G + +A     KM F    K
Sbjct: 557 SANLADIKQGKQIHARVIKT-GYTSETEISNALISLYGKCGSIEDA-----KMDFFEMTK 610

Query: 365 PQPAIFGTLLSACRVHKR----LDLAEFAAMNLFNLNPAN 400
                + T+++ C  H R    LDL  F  M    L P++
Sbjct: 611 RNEVSWNTIITCCSQHGRGLEALDL--FDQMKQQGLKPSD 648



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 190/410 (46%), Gaps = 48/410 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-------LNSD 53
           ++V+  V+W +VL+G+A Q G  ++A  L+ ++ +  VV    +LS IL       L   
Sbjct: 103 LSVRDNVSWVAVLSGYA-QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQL 161

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +     +++    +T   N +IS +++ ++   A  +F  M   +SV+++ +ISG+ +
Sbjct: 162 GRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQ 221

Query: 114 CGQLDKAVELFK------VAP----VKSVVAWTAMISG---------------------- 141
           CG  D+A+ +F       ++P    + S++A  + +                        
Sbjct: 222 CGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIM 281

Query: 142 -------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
                  Y+K G ++ A ++FD     N+V WN M+  Y +         +   M+  G+
Sbjct: 282 EGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGV 341

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RPN  +   +L  C+H   + LG+Q+H L  K+    D      LI MY K G L+ A +
Sbjct: 342 RPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQR 401

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +   I+ KDVV+W +MI+GY QH   ++AL  F +M+  G+ PD+I   + + AC     
Sbjct: 402 ILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKA 461

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           V  G Q   + V   G +A    +  +V L  R G   EA    + +  K
Sbjct: 462 VHQGSQ-IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK 510



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 164/351 (46%), Gaps = 44/351 (12%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G V  A ++F+E+  ++ V+W A+++GY +N   E+ ++L R M   G+ P 
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPT 142

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              LSS+L  C+     QLG+ +H  V+K     +T     LIS+Y +C     A ++F 
Sbjct: 143 PYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFC 202

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG---- 313
           ++   D VT+N +ISG+AQ G G++AL +FD+M+  G+ PDS+T  +LL AC+  G    
Sbjct: 203 DMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRK 262

Query: 314 ----------------------LVDLGIQYFDS----MVNDYGIAAKPDHYTCMVDLLGR 347
                                 L+DL ++  D      + D G       +  M+   G+
Sbjct: 263 GKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQ 322

Query: 348 AGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
              L ++ D+  +M     +P    +  +L  C     + L E   ++   +     +  
Sbjct: 323 IDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGE--QIHSLTIKNGFQSDM 380

Query: 405 YVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV--GTVVHEF 451
           YV   L ++Y+     D   RI   ++E +VV     SW  +  G V HEF
Sbjct: 381 YVSGVLIDMYSKYGWLDKAQRILDMIEEKDVV-----SWTSMIAGYVQHEF 426



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 155/312 (49%), Gaps = 16/312 (5%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI------ECG 115
           F+ L ++D  SW  ++SG+ Q     +A  L+  M     V    ++S  +      E  
Sbjct: 100 FEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELF 159

Query: 116 QLDK--AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           QL +   V+++K           A+IS Y++     LA+++F +M   + VT+N +I+G+
Sbjct: 160 QLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGH 219

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    +  L +   M   G+ P++ +++S+L  CS +  L+ GKQ+H  + K+ +  D 
Sbjct: 220 AQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDY 279

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ +Y K GD+E+A ++F    R +VV WN M+  Y Q     K+  +F +M   
Sbjct: 280 IMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAA 339

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKL 351
           G++P+  T+  +L  C H G + LG Q     + +     + D Y    ++D+  + G L
Sbjct: 340 GVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN---GFQSDMYVSGVLIDMYSKYGWL 396

Query: 352 VEA---VDLIKK 360
            +A   +D+I++
Sbjct: 397 DKAQRILDMIEE 408



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 144/378 (38%), Gaps = 85/378 (22%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+W S++AG+  Q    K+A E F ++    +   NI L+  +     + A     Q
Sbjct: 409 KDVVSWTSMIAGYV-QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQ 467

Query: 64  ---RLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              R+ +     D + WN ++  + +     +A   F A+  K  ++W+ +ISG+ + G 
Sbjct: 468 IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGL 527

Query: 117 LDKAVELF---------------------------------------KVAPVKSVVAWTA 137
            ++A+++F                                       K           A
Sbjct: 528 YEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNA 587

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +IS Y K G ++ A+  F EM  +N V+WN +I    ++    + L L   M   G++P+
Sbjct: 588 LISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPS 647

Query: 198 ASSLSSVLLGCSHLSSLQLG---------------------------------KQVHQLV 224
             +   VL  CSH+  ++ G                                  +  + V
Sbjct: 648 DVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFV 707

Query: 225 FKSPLCKDTTALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
            + P+  D+     L+S  CK        E A K  LE++  D  ++  + + YA  GK 
Sbjct: 708 EEMPIPADSMVWRTLLSA-CKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKW 766

Query: 281 EKALRLFDKMKDEGMKPD 298
               ++   MKD G++ +
Sbjct: 767 ASRDQIRKIMKDRGVRKE 784


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 328/566 (57%), Gaps = 28/566 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           W +++ G+A Q G   ++  L++ + +  +   +   + +L       AA D       +
Sbjct: 107 WTALIRGYALQ-GPFMESVLLYNSMRRQGIGPVSFTFTALL---KACSAALDVNLG---R 159

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
              +   +I GF          DL++          + +I  Y++CG L     +F    
Sbjct: 160 QVHTQTILIGGF--------GSDLYVG---------NTLIDMYVKCGCLGCGHRVFDEML 202

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + V++WT++I  Y K G ++ A +LFD +P K++V W AM+ GY +N+   + L++   
Sbjct: 203 DRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFER 262

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKC 246
           M   G++ +  +L  V+  C+ L + +    V  +  +S     +  +  + LI MY KC
Sbjct: 263 MQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKC 322

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +EDA K+F  ++ ++V ++++MI G+A HG    A+ LFD+M    +KP+ +TF+ +L
Sbjct: 323 GSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVL 382

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+HAG+V+ G Q F  M   +G+A   DHY CMVDLLGRAG+L EA++L+K MP  P 
Sbjct: 383 TACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPH 442

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL ACR+H   D+A+ AA +LF L P N  G Y+ L+NIYA+  +WDDV+++R 
Sbjct: 443 GGVWGALLGACRIHGNPDMAQIAASHLFELEP-NGIGNYILLSNIYASAGRWDDVSKVRK 501

Query: 427 SMKENNVVKMPGYSWIEVGT-VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            M+   + K PG SW+E    ++HEF +GD  HP+   I + L++L  R+K  GY P+L 
Sbjct: 502 LMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLS 561

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
              + + +E K++LL+ HSEKLA+AFGL+    G  IR+ KNLR+C DCH      S I 
Sbjct: 562 SVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQIT 621

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            REI+VRD  RFHHF+DG CSCG++W
Sbjct: 622 GREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 43/246 (17%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F ++   N   W A+I GY       + + L   M   GI P + + +++L  CS    
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 214 LQLGKQVH--------------------------------QLVFKSPLCKDTTALTPLIS 241
           + LG+QVH                                  VF   L +D  + T LI 
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y K G++E A +LF  +  KD+V W AM++GYAQ+ +  +AL +F++M+  G+K D +T
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVND------YGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            V ++ AC       LG   + + V D      +G  +     + ++D+  + G + +A 
Sbjct: 275 LVGVISAC-----AQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 356 DLIKKM 361
            + ++M
Sbjct: 330 KVFERM 335



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK--LF 256
           S L SVL GC+H++ +   KQVH  +F+  L +    L  L+    K     D     +F
Sbjct: 40  SRLVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVF 96

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            +++  +   W A+I GYA  G   +++ L++ M+ +G+ P S TF ALL AC+ A  V+
Sbjct: 97  QQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVN 156

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           LG Q     +   G  +       ++D+  + G L
Sbjct: 157 LGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCL 191


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 313/537 (58%), Gaps = 40/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           NT+I  +     +  AR +F  MPE++ V+W++M+SGY + G  D+ V+LF+        
Sbjct: 160 NTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIE 219

Query: 126 ---VAPVKSVVA----------------------------WTAMISGYMKFGKVDLAEKL 154
              V  +  ++A                             T++I  Y K G+VD A KL
Sbjct: 220 FDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKL 279

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FDEM  +++V W+AMI+GY +    ++ L L   M    + PN  ++ SVL  C+ L + 
Sbjct: 280 FDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAY 339

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GK VH  + K  +    T  T LI  Y KCG ++ + ++F E+  K+V TW A+I G 
Sbjct: 340 ETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGL 399

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A +G+G+ AL  F  M +  +KP+ +TF+ +L AC+HA LVD G   F+SM  D+ I  +
Sbjct: 400 ANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPR 459

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY CMVD+LGRAG L EA   I  MPF P   ++ TLL++CR HK +++AE +  ++ 
Sbjct: 460 IEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHIT 519

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L PA+ +G Y+ L+N YA + + +D  R+R  +KE  + K+PG S IE+  VVHEF S 
Sbjct: 520 RLEPAH-SGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSE 578

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  H     IH+ L ++ K++K  GYVP+ + A     EE KE  +  HSEKLAIA+GLI
Sbjct: 579 DGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLI 638

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +    T IR+ KNLR+C DCH ATK+IS + +R IIVRD  RFHHFKDG CSC DYW
Sbjct: 639 RTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 180/338 (53%), Gaps = 15/338 (4%)

Query: 38  VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           +++  ++ S  LL  D +  A   F  +   +++++N MI G   K++   A  LF  M 
Sbjct: 54  IITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMH 113

Query: 98  EK----NSVSWSAMISGYIECGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFG 146
           EK    +  ++S+++     C ++    E       + K     +      +I  Y   G
Sbjct: 114 EKSVQHDKFTFSSVLKA---CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCG 170

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
           ++ +A  +FD MP +++V WN+M++GY +N   ++ +KL R ++ L I  +  ++ SVL+
Sbjct: 171 QIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLM 230

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C  L++L++G+ + + +    L ++ T  T LI MY KCG ++ A KLF E+ ++DVV 
Sbjct: 231 ACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVA 290

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           W+AMISGYAQ  + ++AL LF +M+   + P+ +T V++L +C   G  + G ++    +
Sbjct: 291 WSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG-KWVHFYI 349

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               +       T ++D   + G +  +V++ K+M FK
Sbjct: 350 KKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFK 387


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/442 (45%), Positives = 279/442 (63%), Gaps = 3/442 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VV+WT M+ G +K G  D A  LFD MP +NLV+WNAM++GYV+     D L++   M  
Sbjct: 165 VVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRA 224

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G+  N    ++ ++ C+   +L  G++VH+ V +S +  D    T ++ MYCKCG +E+
Sbjct: 225 RGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEE 284

Query: 252 ACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           A ++F  L +  K + TWN MI G+A HG+GE AL+LF +M+ EG+ PD +T V +L AC
Sbjct: 285 AWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTAC 344

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            HAG++  G  YF+ +   YGI  K +HY CMVDL GRAG+L EA  +I+ MP +P   +
Sbjct: 345 AHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGV 404

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
            G L  A ++H  +DL E     +  L+P N+ G YV LAN+ A   +W+DVAR+R  M 
Sbjct: 405 LGALFGASKIHGDVDLGEAIGWRVIELDPQNS-GRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           E NV K  G S IEV   V EF+ G   HP    ++   +++ + ++  GYVPD    LH
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVLH 523

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
           A+ EE KE  LL+HSEKLAIAFGL+    G  +R+ KNLRVC DCH ATK++S + +R+I
Sbjct: 524 AIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQI 583

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           +VRD  RFHHFKDG CSC DYW
Sbjct: 584 VVRDRNRFHHFKDGQCSCKDYW 605



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 43/253 (16%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D  SW TM+ G ++      AR LF  MPE+N VSW+AM+SGY++  +   A+E+F    
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223

Query: 126 -----------------------VAPVKSVVAW-------------TAMISGYMKFGKVD 149
                                  +A  + V  W             TA++  Y K G V+
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283

Query: 150 LAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
            A ++F+ +P   K L TWN MI G+  +   ED LKL   M   G+ P+  +L +VL  
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 208 CSHLSSLQLGKQVHQLV-FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVV 265
           C+H   L  G+     V  +  +         ++ +Y + G LE+A K+  ++    DV 
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 266 TWNAMISGYAQHG 278
              A+      HG
Sbjct: 404 VLGALFGASKIHG 416


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/574 (38%), Positives = 340/574 (59%), Gaps = 28/574 (4%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA------SWNTM 76
           L  A+++F  + +P+  SYN ++  +  ++D   A   F +   ++D +      ++ ++
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEM--VEDCSVEPNCFTFPSV 118

Query: 77  ISGFVQKKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELF-------- 124
                + + + + R +  LA+    + +    S ++  Y+ CG ++ A  LF        
Sbjct: 119 FKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDG 178

Query: 125 -------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
                  K      VV W  MI GY++ G++++A  LFDEMP +++V+WN MIAGY ++ 
Sbjct: 179 CDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSG 238

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             ++ +++ R M    + PN  +L SVL   S L +L+LGK VH    ++ +  D    +
Sbjct: 239 HFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGS 298

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            LI MY KCG +E A ++F  + +++VVTW+ +I+G A HG+ +  L  F+ M+  G+ P
Sbjct: 299 ALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMP 358

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
             +T++ LL AC+HAGLV+ G  +FD MV   G+  + +HY CMVDLLGRAG L E+ +L
Sbjct: 359 SDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEEL 418

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I  MP KP   I+  LL AC++H  +++ +  A +L  L P + +G YV L+NIYA++  
Sbjct: 419 ILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHD-SGSYVALSNIYASLGN 477

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W+ VA++RL MKE +V K PG SWIE+  V+HEF   D  HP+   IH  L+E+ + + L
Sbjct: 478 WEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLIL 537

Query: 478 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
            GY P+    L  + EE KE  L +HSEK+AIAFGLI     TP+R+ KNLR+C DCH +
Sbjct: 538 VGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSS 597

Query: 538 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            K IS I KR+IIVRD  RFHHF +G+CSC DYW
Sbjct: 598 IKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 60/318 (18%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            V WN ++ G+ +  G+L+ A+ LFD++PQ  VVS                         
Sbjct: 193 VVLWNVMIDGYVRI-GELEVARNLFDEMPQRSVVS------------------------- 226

Query: 66  PIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECG--QLDK 119
                  WN MI+G+ Q  +  +A    R++ +A    N V+  +++      G  +L K
Sbjct: 227 -------WNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGK 279

Query: 120 AVELFKVAPVKSV--VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
            V L+ V     V  V  +A+I  Y K G ++ A ++F+ +P +N+VTW+ +IAG   + 
Sbjct: 280 WVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHG 339

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
            A+D L     M   G+ P+  +   +L  CSH   +  G+     + +       + L 
Sbjct: 340 RAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVR------VSGLE 393

Query: 238 PLISMYCKCGDL---------EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           P I  Y    DL          +   L + I+  DV+ W A++     HG  E   R+ +
Sbjct: 394 PRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVI-WKALLGACKMHGNVEMGKRVAE 452

Query: 289 KMKDEGMKP-DSITFVAL 305
            + +  + P DS ++VAL
Sbjct: 453 HLME--LAPHDSGSYVAL 468



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLI--SMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           ++Q  KQ+H  + K+   +D  A   L+  S      DL+ A K+F  + R +  ++N +
Sbjct: 23  TMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTL 82

Query: 271 ISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           I   ++      AL +F +M +D  ++P+  TF ++  AC  A  +  G Q
Sbjct: 83  IRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQ 133


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 334/576 (57%), Gaps = 22/576 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-PQ-----PDVVSYNIML-SCILLNSDDVV 56
           +TTV +N +L G        +DA  LF  + PQ     PD  +Y + L SC    +D +V
Sbjct: 83  RTTVFFNVLLRGLTAASLH-RDALLLFASMRPQGHACFPDHYTYPLALKSCA--ATDGLV 139

Query: 57  AAFDFFQ---RLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                     RL +  +    ++ IS + +      A  +F  M  ++ VSW+AMISG+ 
Sbjct: 140 LGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFA 199

Query: 113 ECGQLDKAVELFK--VA-----PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
             G   +A+++F+  VA     P    +A      G  +   + L + +FDEM  K L++
Sbjct: 200 HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLIS 259

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNAM+A Y  N    + ++L   M   GI P+A +L++VL  C  +S+L LGK++H+++ 
Sbjct: 260 WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIK 319

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +  +C        L+ MY  CG L++A  +F  +  +DVV+W ++IS Y +HG G +A+ 
Sbjct: 320 RRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAID 379

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF+KM  +G++PDSI FVA+L AC+HAGL+D+G  YF SM +++ IA K +HY CMVDLL
Sbjct: 380 LFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLL 439

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GRAG + EA D I  MP KP   ++G LL ACR+H  +D+   AA +L  L P    G Y
Sbjct: 440 GRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ-TGYY 498

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L+NIYA   +W DV+ +R  M+   + K+PG S  E+G  VH F  GD  HP+   I+
Sbjct: 499 VLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIY 558

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           +KL EL +R++  GY P++E  LH V EE KE  L  HSEKLAIAF LI    GTPIR+ 
Sbjct: 559 KKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRIT 618

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
            NLR C DCH A K IS I  REII++D  R H+ K
Sbjct: 619 MNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 36/295 (12%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM--IGLGIRPNASSLSSVLLGCSHL 211
           + D  P +  V +N ++ G    S   D L L   M   G    P+  +    L  C+  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
             L LG+Q+H    +  L  +       ISMY +CG  +DA ++F E+Q +DVV+WNAMI
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 272 SGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGI--QYFDSMVND 328
           SG+A  G   +A+ +F ++   +  KPD+ T  ++L +   A + D+ +    FD M   
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC-------- 377
             I+     +  M+ +       VEAV+L  +M     +P      T+L +C        
Sbjct: 256 GLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSL 310

Query: 378 --RVHKRLD--------LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
             R+H+ +         L E A M+++    AN  GC  +  +++ +M   D V+
Sbjct: 311 GKRIHEVIKRRRMCSSMLLENALMDMY----AN-CGCLKEARDVFDSMGTRDVVS 360



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 167/385 (43%), Gaps = 60/385 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSY-NIMLSCILLNSDD 54
           M  +  V+WN++++GFA   G    A ++F ++     P+PD  +  +I+ S      +D
Sbjct: 183 MQYRDVVSWNAMISGFA-HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED 241

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           +      F  +  K   SWN M++ +   +   +A +LF+ M     E ++V+ + ++  
Sbjct: 242 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 301

Query: 111 YIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             E   L     + +V   +    S++   A++  Y   G +  A  +FD M T+++V+W
Sbjct: 302 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 361

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+ Y  +    + + L   M G G+ P++ +  ++L  CSH   L +GK        
Sbjct: 362 TSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY------ 415

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                           Y    +   A KL           +  M+    + G   +A   
Sbjct: 416 ---------------FYSMTSEFHIAPKL---------EHYACMVDLLGRAGCIREA--- 448

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLL 345
           +D +    +KP+   + ALL AC     +D+G+   DS++    +A K   +Y  + ++ 
Sbjct: 449 YDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLR---LAPKQTGYYVLLSNIY 505

Query: 346 GRAGK-----LVEAV---DLIKKMP 362
            RAG+     +V +V     IKK+P
Sbjct: 506 ARAGRWADVSMVRSVMESKGIKKLP 530


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/523 (42%), Positives = 304/523 (58%), Gaps = 10/523 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIE 113
           A   F+ +P  D   +N+M  G+ +     KA  LF+     N      ++ +++   + 
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                +  +L     K+   ++      +I+ Y     VD A+++FDE+    +V++NA+
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY  +S   + L L R +    ++PN  ++ SVL  C+ L +L LGK +H+ V K+ L
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL 259

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            K     T LI MY KCG L+ A  +F  +  +D   W+AMI  YA HG+G+  + +F++
Sbjct: 260 DKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEE 319

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M    ++PD ITF+ LL AC+H GLVD G +YF SM   YGI     HY CMVDLLGRAG
Sbjct: 320 MARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAG 379

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA   I ++P KP P ++ TLLS+C  H  L+LA+     +  L+ ++  G YV L+
Sbjct: 380 LLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSH-GGDYVILS 438

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+ A   KW+DV  +R  M     VK+PG S IEV  VVHEF SGD VH    ++H  L 
Sbjct: 439 NLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALD 498

Query: 470 ELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
           EL K +K  GYVPD    +H  + +E KE  L +HSEKLAI+FGL+  P GT IRV KNL
Sbjct: 499 ELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNL 558

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVCGDCH A K IS++  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 559 RVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
             +D A +LF+ +P  ++V +N+M  GY  ++     + L    +   + P+  +  S+L
Sbjct: 75  ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C    + Q GKQ+H L  K  L ++      LI+MY  C D++ A ++F EI    VV
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVV 194

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           ++NA+I+GYA+  +  +AL LF +++   +KP+ +T +++L +C   G +DLG ++    
Sbjct: 195 SYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG-KWIHEY 253

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           V   G+       T ++D+  + G L  A+ + + M  +
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR 292


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/522 (39%), Positives = 305/522 (58%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A +   R+P +   SW TMISG+ Q +   +A DLF+ M     +     ++  +     
Sbjct: 96  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 155

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            +++         L K      +   ++++  Y K   +  A ++FD +P +++V+  A+
Sbjct: 156 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 215

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+GY +    E+ L L R +   G++ N  + ++++   S L+SL  GKQVH L+ +  L
Sbjct: 216 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 275

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                    LI MY KCG L  + ++F  +  + VV+WNAM+ GY +HG G + + LF  
Sbjct: 276 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD 335

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           +  E +KPDS+T +A+L  C+H GLVD G+  FD++V +        HY C++DLLGR+G
Sbjct: 336 LHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 394

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           +L +A++LI+ MPF+  P+I+G+LL ACRVH  + + E  A  L  + P NA G YV L+
Sbjct: 395 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENA-GNYVILS 453

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYAA   W DV ++R  M E  V K PG SWI +  V+H F S +R HP    I+ K+K
Sbjct: 454 NIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIK 513

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           E+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P G  IRV KNLR
Sbjct: 514 EIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLR 573

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +C DCH   K++S + +REI +RD  RFH    G C+CGDYW
Sbjct: 574 ICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 109/190 (57%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V   T +++ Y++ G +D A  + D MP +++V+W  MI+GY +     + L L   M+
Sbjct: 76  AVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKML 135

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G  PN  +L++VL  CS   S+  GKQVH L+ K+         + L+ MY K  +++
Sbjct: 136 RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 195

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A ++F  +  +DVV+  A+ISGYAQ G  E+AL LF ++  EGM+ + +TF  L+ A +
Sbjct: 196 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 255

Query: 311 HAGLVDLGIQ 320
               +D G Q
Sbjct: 256 GLASLDYGKQ 265



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAM 107
           S+++  A   F  LP +D  S   +ISG+ QK    +A DLF  +  +    N V+++ +
Sbjct: 191 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 250

Query: 108 ISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           ++       LD   ++  +   K     V    ++I  Y K GK+  + ++FD M  +++
Sbjct: 251 VTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSV 310

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+WNAM+ GY  +    + + L + +    ++P++ +L +VL GCSH   +  G  +   
Sbjct: 311 VSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDT 369

Query: 224 VFK-SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           V K       T     +I +  + G LE A  L 
Sbjct: 370 VVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 403


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/522 (39%), Positives = 305/522 (58%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A +   R+P +   SW TMISG+ Q +   +A DLF+ M     +     ++  +     
Sbjct: 64  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSG 123

Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            +++         L K      +   ++++  Y K   +  A ++FD +P +++V+  A+
Sbjct: 124 PQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAI 183

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+GY +    E+ L L R +   G++ N  + ++++   S L+SL  GKQVH L+ +  L
Sbjct: 184 ISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL 243

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                    LI MY KCG L  + ++F  +  + VV+WNAM+ GY +HG G + + LF  
Sbjct: 244 PFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD 303

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           +  E +KPDS+T +A+L  C+H GLVD G+  FD++V +        HY C++DLLGR+G
Sbjct: 304 LHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSG 362

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           +L +A++LI+ MPF+  P+I+G+LL ACRVH  + + E  A  L  + P NA G YV L+
Sbjct: 363 RLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENA-GNYVILS 421

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           NIYAA   W DV ++R  M E  V K PG SWI +  V+H F S +R HP    I+ K+K
Sbjct: 422 NIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIK 481

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           E+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P G  IRV KNLR
Sbjct: 482 EIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLR 541

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +C DCH   K++S + +REI +RD  RFH    G C+CGDYW
Sbjct: 542 ICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 109/190 (57%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V   T +++ Y++ G +D A  + D MP +++V+W  MI+GY +     + L L   M+
Sbjct: 44  AVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKML 103

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G  PN  +L++VL  CS   S+  GKQVH L+ K+         + L+ MY K  +++
Sbjct: 104 RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 163

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A ++F  +  +DVV+  A+ISGYAQ G  E+AL LF ++  EGM+ + +TF  L+ A +
Sbjct: 164 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 223

Query: 311 HAGLVDLGIQ 320
               +D G Q
Sbjct: 224 GLASLDYGKQ 233



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAM 107
           S+++  A   F  LP +D  S   +ISG+ QK    +A DLF  +  +    N V+++ +
Sbjct: 159 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 218

Query: 108 ISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           ++       LD   ++  +   K     V    ++I  Y K GK+  + ++FD M  +++
Sbjct: 219 VTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSV 278

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+WNAM+ GY  +    + + L + +    ++P++ +L +VL GCSH   +  G  +   
Sbjct: 279 VSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDT 337

Query: 224 VFK-SPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           V K       T     +I +  + G LE A  L 
Sbjct: 338 VVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/566 (39%), Positives = 333/566 (58%), Gaps = 17/566 (3%)

Query: 19  QRGKLKDAQ----ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN 74
           Q GKLK+ +     + +   + D+V  N +L  +      +  A   F  +P +D  SW 
Sbjct: 86  QLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF-MYARCGSLEGARRLFDEMPHRDMVSWT 144

Query: 75  TMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMIS--GYI---ECGQLDKAVELFK 125
           +MI+G+ Q    + A  LF  M     E N  + S+++   GY+    CG+   A   +K
Sbjct: 145 SMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHAC-CWK 203

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                +V   ++++  Y + G +  A  +FD++  KN V+WNA+IAGY      E+ L L
Sbjct: 204 YGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALAL 263

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M   G RP   + S++L  CS +  L+ GK +H  + KS           L+ MY K
Sbjct: 264 FVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAK 323

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G + DA K+F ++ + DVV+ N+M+ GYAQHG G++A + FD+M   G++P+ ITF+++
Sbjct: 324 SGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSV 383

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC+HA L+D G  YF  ++  Y I  K  HY  +VDLLGRAG L +A   I++MP +P
Sbjct: 384 LTACSHARLLDEGKHYF-GLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEP 442

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
             AI+G LL A ++HK  ++  +AA  +F L+P+   G +  LANIYA+  +W+DVA++R
Sbjct: 443 TVAIWGALLGASKMHKNTEMGAYAAQRVFELDPS-YPGTHTLLANIYASAGRWEDVAKVR 501

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             MK++ V K P  SW+EV   VH F + D  HP+   IH+  ++L +++K  GYVPD  
Sbjct: 502 KIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTS 561

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
             L  V ++ KE  L +HSEKLA++F L+  P G+ IR+ KN+RVCGDCH A KY+S + 
Sbjct: 562 HVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVV 621

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
           KREIIVRDT RFHHF DG CSCGDYW
Sbjct: 622 KREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 1/188 (0%)

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
           ++ GL +L ++    + P+ +  +++L  C+ L  L+ GK VH  V  S    D      
Sbjct: 55  SKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNS 114

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY +CG LE A +LF E+  +D+V+W +MI+GYAQ+ +   AL LF +M  +G +P+
Sbjct: 115 LLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPN 174

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
             T  +L+  C +    + G Q   +    YG  +     + +VD+  R G L EA+ + 
Sbjct: 175 EFTLSSLVKCCGYMASYNCGRQ-IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVF 233

Query: 359 KKMPFKPQ 366
            K+  K +
Sbjct: 234 DKLGCKNE 241



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 71/298 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           +  K  V+WN+++AG+A+ +G+ ++A  LF ++     +P   +Y+ +LS          
Sbjct: 236 LGCKNEVSWNALIAGYAR-KGEGEEALALFVRMQREGYRPTEFTYSALLS---------- 284

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                         +S   +  G     ++ K+    +          + ++  Y + G 
Sbjct: 285 ------------SCSSMGCLEQGKWLHAHLMKSSQKLVGYVG------NTLLHMYAKSGS 326

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           +  A ++F       VV+  +M+ GY + G    A + FDE                   
Sbjct: 327 IRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDE------------------- 367

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
                       MI  GI PN  +  SVL  CSH   L  GK    L+ K  +    +  
Sbjct: 368 ------------MIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHY 415

Query: 237 TPLISMYCKCGDLEDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGE----KALRLFD 288
             ++ +  + G L+ A K F+E       V  W A++     H   E     A R+F+
Sbjct: 416 ATIVDLLGRAGLLDQA-KSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFE 472


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/481 (42%), Positives = 287/481 (59%), Gaps = 7/481 (1%)

Query: 96  MPEKNSVSW---SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAE 152
           +P K S S    S  ISG  + G+     ++ K+     ++  T ++  Y K G V+ A 
Sbjct: 27  LPSKTSFSLILRSCAISGEAQLGEAFHC-QIMKMGFEYDMILQTGLLDFYAKHGYVEEAR 85

Query: 153 KLFDEMPTKNL--VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
            LFD M  +N   VTWN MI+ YV+       + + + M    ++P   ++ S+L  C+H
Sbjct: 86  NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 145

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L +L +G+ +H  +    L  D      LI MYCKCG LE A  +F  + RK++  WN++
Sbjct: 146 LGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSI 205

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I G   +G+GE+A+  F  M+ EG+KPD +TFV +L  C+H+GL+  G +YF  M+  YG
Sbjct: 206 IVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYG 265

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           +    +HY CMVDLLGRAG L EA++LI+ MP KP   + G+LL AC++HK   L E   
Sbjct: 266 LEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVT 325

Query: 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
             L  L+P +  G YV L+N+YA++ +WDDV   R  M +  V K PG S IEV  +VHE
Sbjct: 326 QQLLELDPCD-GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHE 384

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
           F +GD  HP+   I+  L E+ K +K  G+VP+    LH + EE KE  + +HSE++A+A
Sbjct: 385 FVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVA 444

Query: 511 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
           FGL+  P G  IRV KNLR C DCH A K IS   KREIIVRD  RFHHF++G+CSC DY
Sbjct: 445 FGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDY 504

Query: 571 W 571
           W
Sbjct: 505 W 505



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 134/305 (43%), Gaps = 40/305 (13%)

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI   +E+    D L     M+   + P+ +S S +L  C+     QLG+  H  + K  
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRL 286
              D    T L+  Y K G +E+A  LF  +  +  + VTWN MIS Y Q G+   A+ +
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLG---------------IQYFDSMVNDY-- 329
           F +M+ E +KP  +T V+LL AC H G +D+G               +   +++++ Y  
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCK 180

Query: 330 ------------GIAAKP----DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
                       G++ K     +     + + GR  + + A  +++K   KP    F  +
Sbjct: 181 CGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGI 240

Query: 374 LSACRVHKRLDLAE--FAAM-NLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           LS C     L   +  F+ M  ++ L P     GC V L      +K+  ++ R  + MK
Sbjct: 241 LSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRA-MPMK 299

Query: 430 ENNVV 434
            N++V
Sbjct: 300 PNSMV 304



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 107/260 (41%), Gaps = 41/260 (15%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELF 124
           ++ +WNTMIS +VQ      A  +F  M  +N     V+  +++S     G LD    + 
Sbjct: 97  NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 156

Query: 125 KVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                K     VV   A+I  Y K G ++ A  +F  +  KN+  WN++I G   N   E
Sbjct: 157 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 216

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + +    +M   GI+P+  +   +L GCSH   L  G++                 + ++
Sbjct: 217 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRY---------------FSEML 261

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            +Y     LE             V  +  M+    + G  ++AL L   M    MKP+S+
Sbjct: 262 GVY----GLEPG-----------VEHYGCMVDLLGRAGYLKEALELIRAMP---MKPNSM 303

Query: 301 TFVALLLACNHAGLVDLGIQ 320
              +LL AC       LG Q
Sbjct: 304 VLGSLLRACQIHKDTKLGEQ 323


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 307/520 (59%), Gaps = 13/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--ECGQLDK 119
           F ++    T  WN +I GF+Q  N   A   + +M  K S    A+   ++   C ++  
Sbjct: 62  FSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISK-SRKVDALTCSFVLKACARVLA 120

Query: 120 AVELFKVAP-------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            +E  ++         +   +  T ++  Y K G++D AEK+FDEM  +++ +WNA+I+G
Sbjct: 121 RLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISG 180

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           + + S   + L L + M   G +PN  S+   L  C+ L   + G+++H  +       +
Sbjct: 181 FAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMN 240

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
                 +I MY KCG ++ A  +F  +  RKD+VTWN MI  +A HG+G KAL LF+KM 
Sbjct: 241 AQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMD 300

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G+ PD ++++A+L ACNH GLV+ G + F+SM N  G+     HY  +VDLLGRAG+L
Sbjct: 301 QSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLLGRAGRL 359

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA D++  MP  P   ++ TLL A R H+ +++AE  +  L  +  +N  G +V L+N+
Sbjct: 360 HEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMG-SNHCGDFVLLSNV 418

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YAA ++W DV R+R +MK  +V K+PG S+IE   V+H+F + D+ H     I+ KL E+
Sbjct: 419 YAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEI 478

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R+K  GYV +  F LH +GEE KE +L  HSEKLA+AFGLI    GTPI+V KNLR+C
Sbjct: 479 RFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRIC 538

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K IS I  REIIVRD  RFH FK+G CSC DYW
Sbjct: 539 GDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 26/276 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A+++FD++ + D+ S+N ++S     S     A   F+R+           I GF
Sbjct: 154 GEIDSAEKVFDEMVKRDIASWNALISGFAQGSKP-TEALSLFKRME----------IDGF 202

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
             K N         A  +         I GYI+  + D   ++  V           +I 
Sbjct: 203 --KPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNV-----------VID 249

Query: 141 GYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
            Y K G VD A  +F+ M   K++VTWN MI  +  +      L+L   M   G+ P+  
Sbjct: 250 MYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDV 309

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           S  +VL  C+H   ++ G ++   +    +  +      ++ +  + G L +A  +   +
Sbjct: 310 SYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSM 369

Query: 260 QR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               D+V W  ++     H   E A  +  K+ + G
Sbjct: 370 PTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMG 405


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/624 (38%), Positives = 324/624 (51%), Gaps = 79/624 (12%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF----------DFFQ---------R 64
           A  +F + P P++  YN ++  ++ N    D V+ +          D F          R
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113

Query: 65  LP-------------IKDTASWNTMI-SGFV--QKKN--MAKARDLFLAMPEKNSVSWSA 106
           LP             IK    W+  + +G V    KN  +  AR +F  +PEKN VSW+A
Sbjct: 114 LPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTA 173

Query: 107 MISGYIECGQLDKAVELFK---------------------------------------VA 127
           +I GYIE G   +A+ LF+                                         
Sbjct: 174 IICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG 233

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            V +V   T+++  Y K G ++ A ++FD M  K++V W+A+I GY  N   ++ L +  
Sbjct: 234 SVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFF 293

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    +RP+  ++  V   CS L +L+LG     L+       +    T LI  Y KCG
Sbjct: 294 EMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCG 353

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            +  A ++F  ++RKD V +NA+ISG A  G    A  +F +M   GM+PD  TFV LL 
Sbjct: 354 SVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLC 413

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
            C HAGLVD G +YF  M + + +    +HY CMVDL  RAG LVEA DLI+ MP +   
Sbjct: 414 GCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANS 473

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LL  CR+HK   LAE     L  L P N +G YV L+NIY+A  +WD+  +IR S
Sbjct: 474 IVWGALLGGCRLHKDTQLAEHVLKQLIELEPWN-SGHYVLLSNIYSASHRWDEAEKIRSS 532

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           + +  + K+PG SW+EV  VVHEF  GD  HP    I+EKL+ L K ++ AGY P  EF 
Sbjct: 533 LNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFV 592

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           L  V EE KE  L  HSEKLA+AF LI       IRV KNLRVCGDCH A K +S +  R
Sbjct: 593 LFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGR 652

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
           EIIVRD  RFHHF +G+CSC DYW
Sbjct: 653 EIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++   + F     A  +F + P  N+  +N +I G V N    D + +   M   G  P+
Sbjct: 41  LLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPD 100

Query: 198 ASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
             +   VL  C+ L     +G  +H LV K+    D    T L+ +Y K G L DA K+F
Sbjct: 101 NFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVF 160

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            EI  K+VV+W A+I GY + G   +AL LF  + + G++PDS T V +L AC+  G + 
Sbjct: 161 DEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLA 220

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            G ++ D  + + G        T +VD+  + G + EA  +   M
Sbjct: 221 SG-RWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM 264



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L SL   KQ H L+ +  L +DT  +  L+         + A  +F +    ++  +N +
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---HAGLVDLGIQYFDSMVN 327
           I G   +     A+ ++  M+  G  PD+ TF  +L AC    H   V L +    S+V 
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLH---SLVI 129

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP----QPAIFGTLLSAC 377
             G        T +V L  + G L +A  +  ++P K        I G + S C
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 333/613 (54%), Gaps = 48/613 (7%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFF 62
             V WN +L  +  Q   L  + E+F ++    +        CIL        +   +  
Sbjct: 310 NVVLWNLMLVAYG-QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQI 368

Query: 63  QRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             L IK+    +  +SG     + + + + KAR +   + +++ VSW++MI+GY++    
Sbjct: 369 HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFC 428

Query: 118 DKAVELFK-------------VAPVKSVVA--------------------------WTAM 138
           ++A+  FK             +A   S  A                          W  +
Sbjct: 429 EEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTL 488

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++ Y + G+ + A  LF E+  K+ +TWN +I+G+ ++   E  L +   M   G + N 
Sbjct: 489 VNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNV 548

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +  S +   ++L+ ++ GKQVH    K+    +T     LIS+Y KCG +EDA  +F E
Sbjct: 549 FTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSE 608

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  ++ V+WN +I+  +QHG+G +AL LFD+MK EG+KP+ +TF+ +L AC+H GLV+ G
Sbjct: 609 MSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEG 668

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
           + YF SM N YG+   PDHY C+VD+LGRAG+L  A   + +MP      I+ TLLSAC+
Sbjct: 669 LSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACK 728

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           VHK +++ E AA +L  L P ++A  YV L+N YA   KW +  ++R  MK+  + K PG
Sbjct: 729 VHKNIEIGELAAKHLLELEPHDSAS-YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPG 787

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SWIEV   VH F  GDR+HP    I++ L EL  R+   GY  +     H   +E K+ 
Sbjct: 788 RSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDP 847

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
               HSEKLA+AFGL+ +P   P+RV KNLRVC DCH   K+ S + +REI++RD  RFH
Sbjct: 848 TAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFH 907

Query: 559 HFKDGTCSCGDYW 571
           HF  G+CSCGDYW
Sbjct: 908 HFNSGSCSCGDYW 920



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 176/351 (50%), Gaps = 16/351 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           D+  A D F      +   WN M+  + Q  ++AK+ ++F  M       N  ++  ++ 
Sbjct: 295 DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILR 354

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISG-----YMKFGKVDLAEKLFDEMPTKNLV 164
                GQ++   ++  ++ +K+       +SG     Y K+  +D A K+ + +  +++V
Sbjct: 355 TCTCTGQIELGEQIHSLS-IKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVV 413

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W +MIAGYV++ + E+ L   + M   G+ P+   L+S    C+ + +++ G Q+H  V
Sbjct: 414 SWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           + S    D +    L+++Y +CG  E+A  LF EI  KD +TWN +ISG+ Q    E+AL
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQAL 533

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F KM   G K +  TF++ + A  +   +  G Q     V   G  ++ +    ++ L
Sbjct: 534 MVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISL 592

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            G+ G + +A  +  +M  + + + + T++++C  H R       A++LF+
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGR----GLEALDLFD 638



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 193/414 (46%), Gaps = 52/414 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK------IPQPDVVSYNIMLSCI---LLN 51
           ++ +  V+W ++L+G+A QRG  K+A  L+ +      IP P V+S +++ +C    L  
Sbjct: 104 LSSRDHVSWVAMLSGYA-QRGLGKEAFRLYSQMHWTAVIPTPYVLS-SVLSACTKGKLFA 161

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              ++ A   +++    +T   N +I+ ++   +   A  +F  M   + V+++ +ISG+
Sbjct: 162 QGRMIHA-QVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 112 IECGQLDKAVELFK----------VAPVKSVVAWTAMISG-------------------- 141
            +CG  + A+++F              V S++A  A +                      
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDY 280

Query: 142 ---------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
                    Y+K G ++ A  +F+     N+V WN M+  Y + S      ++   M   
Sbjct: 281 ITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT 340

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI PN  +   +L  C+    ++LG+Q+H L  K+    D      LI MY K   L+ A
Sbjct: 341 GIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKA 400

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K+   ++++DVV+W +MI+GY QH   E+AL  F +M+D G+ PD+I   +   AC   
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             +  G+Q   + V   G AA    +  +V+L  R G+  EA  L +++  K +
Sbjct: 461 KAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDE 513



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 8/274 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--------PEKNSVSWSA 106
           V  A   F+ L  +D  SW  M+SG+ Q+    +A  L+  M        P   S   SA
Sbjct: 94  VWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSA 153

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
              G +         +++K A         A+I+ Y+ FG   LAE++F +M   + VT+
Sbjct: 154 CTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTF 213

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N +I+G+ +    E  L++   M   G+RP+  +++S+L  C+ +  LQ GKQ+H  + K
Sbjct: 214 NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK 273

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + +  D      L+ +Y KCGD+E A  +F    R +VV WN M+  Y Q     K+  +
Sbjct: 274 AGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEI 333

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           F +M+  G+ P+  T+  +L  C   G ++LG Q
Sbjct: 334 FGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ 367



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G V  A ++F E+ +++ V+W AM++GY +    ++  +L   M    + P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              LSSVL  C+       G+ +H  V+K   C +T     LI++Y   G  + A ++F 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++   D VT+N +ISG+AQ G GE AL++FD+M+  G++PD +T  +LL AC   G +  
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           G Q   S +   G++        ++DL  + G +  A D+ 
Sbjct: 264 GKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/477 (44%), Positives = 298/477 (62%), Gaps = 4/477 (0%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           E N    +AMI  Y   G +D+A  +F  +  + + +W  MI GY+  G++  A+++FDE
Sbjct: 64  ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE 123

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
           M  +++V+W  +IAGYV+    ++ L L   M+  G  PN  +L+S L  C++L +L  G
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 183

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--RKDVVTWNAMISGYA 275
           + +H  + KS +  +   L  L+ MY KCG+++ A K+F +    +  V  WNAMI GYA
Sbjct: 184 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYA 243

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            HGK ++A+ LF++MK E + P+ +TFVALL AC+H  LV+ G  YF SM + YGI  + 
Sbjct: 244 MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEI 303

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           +HY CMVDLLGR+G L EA + +  MP  P   I+G LL ACR+HK ++  +     +  
Sbjct: 304 EHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKE 363

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L+ ++  GC+V LAN+Y+A  +WD+   +R  ++ +   K PG S IE+  V H+F  GD
Sbjct: 364 LD-SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 422

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           R HP+   ++  L E+  ++K AGYVP+  E  L    EE KE  L  HSEKLAIAFGLI
Sbjct: 423 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLI 482

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             P GT IR+ KNLRVC DCH ATK+IS + KREIIVRD  R+HHFKDG CSC DYW
Sbjct: 483 NTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 25/290 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + +A+ +FD     D+ S+NIM+    + S ++  A + F  +  +D  SW T+I+G+
Sbjct: 81  GLVDEARRVFDWSLDQDLYSWNIMIGG-YVGSGEIGRAKEMFDEMSERDVVSWTTIIAGY 139

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSV 132
           VQ     +A DLF  M    P  N  + ++ ++       LD+     V + K     + 
Sbjct: 140 VQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNE 199

Query: 133 VAWTAMISGYMKFGKVDLAEKLF-DEMPTKNLV-TWNAMIAGYVENSWAEDGLKLLRMMI 190
               +++  Y K G++D A K+F DE   K  V  WNAMI GY  +  +++ + L   M 
Sbjct: 200 RLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMK 259

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              + PN  +  ++L  CSH   ++ G+      FKS     +  + P I  Y    DL 
Sbjct: 260 VEKVSPNKVTFVALLNACSHGKLVEEGRG----YFKS--MASSYGIEPEIEHYGCMVDLL 313

Query: 251 DACKLFLEIQRK--------DVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               L  E +          D   W A++     H   E+  R+   +K+
Sbjct: 314 GRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKE 363


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/442 (45%), Positives = 279/442 (63%), Gaps = 3/442 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VV+WT M+ G +K G  D A  LFD MP +NLV+WNAM++GYV+     D L++   M  
Sbjct: 165 VVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRA 224

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G+  N    ++ ++ C+   +L  G++VH+ V +S +  D    T ++ MYCKCG +E+
Sbjct: 225 RGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEE 284

Query: 252 ACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           A ++F  L +  K + TWN MI G+A HG+G+ AL+LF +M+ EG+ PD +T V +L AC
Sbjct: 285 AWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTAC 344

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            HAG++  G  YF+ +   YGI  K +HY CMVDL GRAG+L EA  +I+ MP +P   +
Sbjct: 345 AHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGV 404

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
            G L  A ++H  +DL E     +  L+P N+ G YV LAN+ A   +W+DVAR+R  M 
Sbjct: 405 LGALFGASKIHGDVDLGEAIGWRVIELDPQNS-GRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           E NV K  G S IEV   V EF+ G   HP    ++    ++ ++++  GYVPD    LH
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLH 523

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
           A+ EE KE  LL+HSEKLAIAFGL+    G  +R+ KNLRVC DCH ATK++S + +R+I
Sbjct: 524 AIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQI 583

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           +VRD  RFHHFKDG CSC DYW
Sbjct: 584 VVRDRNRFHHFKDGQCSCKDYW 605



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 43/253 (16%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D  SW TM+ G ++      AR LF  MPE+N VSW+AM+SGY++  +   A+E+F    
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223

Query: 126 -----------------------VAPVKSVVAW-------------TAMISGYMKFGKVD 149
                                  +A  + V  W             TA++  Y K G V+
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283

Query: 150 LAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
            A ++F+ +P   K L TWN MI G+  +   +D LKL   M   G+ P+  +L +VL  
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 208 CSHLSSLQLGKQVHQLV-FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVV 265
           C+H   L  G+     V  +  +         ++ +Y + G LE+A K+  ++    DV 
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 266 TWNAMISGYAQHG 278
              A+      HG
Sbjct: 404 VLGALFGASKIHG 416


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/474 (44%), Positives = 290/474 (61%), Gaps = 3/474 (0%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +S   +A++  Y   G    A  LF  + P   VV+ TAM++ Y   G +D A  LFD +
Sbjct: 420 DSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGL 479

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           PTK+ V WNAMI GY ++    + L+L R M+G G+ P+  ++  VL   + L +++ GK
Sbjct: 480 PTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGK 539

Query: 219 QVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            +H  V  S   + +  + T LI MYCKCG L DA  +F  I  KD+V WNAMI+GYA H
Sbjct: 540 WLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMH 599

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G   KAL +F + +++G+ P  ITF+ LL AC+H+G+V+ G ++F SM  +YGI  K +H
Sbjct: 600 GDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEH 659

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
           Y CMVDLLGRAG + EA  L++ M   P   ++ +LL+ACR+HK + L +  A  L    
Sbjct: 660 YGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKG 719

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
            AN+ G Y+ L+NIYAA+  W +VAR+R  MK + + K PG S IE+   V+EF +GD  
Sbjct: 720 LANS-GMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMS 778

Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           HP    I+  L ++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGLI   
Sbjct: 779 HPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQ 838

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            G  I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+CSCGDYW
Sbjct: 839 PGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 107/249 (42%), Gaps = 35/249 (14%)

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y   G++DL+  L         + + + I  +         L LL  M+  G+ P A +
Sbjct: 332 AYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHT 391

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD------------ 248
           LS+ L  C  LS    G+ +H   FK  L  D+   T L+ MY + GD            
Sbjct: 392 LSASLPACRGLSP---GRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDML 448

Query: 249 --------------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
                               L+DA  LF  +  KD V WNAMI GY QHG+  +ALRLF 
Sbjct: 449 PDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFR 508

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M   G++PD +T V +L A    G V+ G      + N   +       T ++D+  + 
Sbjct: 509 RMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKC 568

Query: 349 GKLVEAVDL 357
           G L +AVD+
Sbjct: 569 GSLGDAVDV 577


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 314/551 (56%), Gaps = 28/551 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           +  A  LFD+I   D++ +NIM       S+    AF  F  L          + SG + 
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARG-YARSNSPYLAFSLFGEL----------LCSGLLP 128

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGY-IECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                   D   +   K   S  A+  G  + C  +       K+    ++     +I+ 
Sbjct: 129 D-------DYTFSSLLKACASSKALREGMGLHCFAV-------KLGLNHNIYICPTLINM 174

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y +   ++ A  +FDEM    +V++NA+I GY  +S   + L L R +    I P   ++
Sbjct: 175 YAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTM 234

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            SV++ C+ L +L LGK +H+ V K    K     T LI M+ KCG L DA  +F  ++ 
Sbjct: 235 LSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRV 294

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +D   W+AMI  +A HG G KA+ +F++MK EG++PD ITF+ LL AC+HAGLV+ G  Y
Sbjct: 295 RDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGY 354

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           F SM   YGI     HY CMVDLLGRAG L EA + + K+  K  P ++ TLLSAC  H 
Sbjct: 355 FYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHG 414

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            +++A+     +F L+ A+  G YV L+N+YA + +W+DV  +R  MK+  VVK+PG S 
Sbjct: 415 NVEMAKRVIERIFELDDAH-GGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSS 473

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLL 500
           +EV  VVHEF SGD VH   V +   L EL K +KL GYVPD     HA + EE KE +L
Sbjct: 474 VEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVL 533

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
            +HSEKLA+AFGL+  P GT IRV KNLR+CGDCH A K IS I  R+I++RD  RFH F
Sbjct: 534 RYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRF 593

Query: 561 KDGTCSCGDYW 571
           +DG CSCGD+W
Sbjct: 594 EDGKCSCGDFW 604


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/543 (39%), Positives = 320/543 (58%), Gaps = 27/543 (4%)

Query: 45  LSCILLN---SDDVVAAFDF----FQRLPIKDTASWNTMISGFVQ-----KKNMAKARDL 92
           +SC L++     ++  A D+    F+R+   D  SW  +ISG+VQ      K M    ++
Sbjct: 291 VSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEM 350

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKV 148
                + N +++S+++         D        + K     +     A++S Y + G +
Sbjct: 351 LNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCM 410

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           + A ++F+++  +      +MI+   E   A    ++ RM +G+    ++S+ +S++   
Sbjct: 411 EEARRVFNQLYER------SMISCITEGRDAPLDHRIGRMDMGI----SSSTFASLISAA 460

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + +  L  G+Q+H +  K+    D      L+SMY +CG LEDAC+ F E++ ++V++W 
Sbjct: 461 ASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWT 520

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           +MISG A+HG  E+AL LF  M   G+KP+ +T++A+L AC+H GLV  G +YF SM  D
Sbjct: 521 SMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRD 580

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           +G+  + +HY CMVDLL R+G + EA++ I +MP K    ++ TLL ACR H  +++ E 
Sbjct: 581 HGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEI 640

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           AA N+  L P + A  YV L+N+YA    WD+VARIR +M++NN+ K  G SW+EV    
Sbjct: 641 AAKNVIELEPRDPAP-YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTT 699

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEFR+GD  HP    I+ KL  L   +K  GYVPD    LH + +E+KEQ LL HSEK+A
Sbjct: 700 HEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIA 759

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGLI      PIR+FKNLRVC DCH A KY+S   +REII+RD+ RFH  KDG CSCG
Sbjct: 760 VAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCG 819

Query: 569 DYW 571
           +YW
Sbjct: 820 EYW 822



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 155/340 (45%), Gaps = 47/340 (13%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAM----------------ISG 110
           +D    N++++ + +   +A AR++F  M   ++ VSW+AM                I  
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGE 141

Query: 111 YIECGQLDKAVELFKVAPV-------------------------KSVVAWTAMISGYMKF 145
            +E G L  A  L  VA                             +   +A+I    + 
Sbjct: 142 MLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARN 201

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G +  A K+FD +  K +V W  +I+ YV+   AE+ +++    +  G  P+  ++SS++
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMI 261

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRK 262
             C+ L S++LG Q+H L  +     D      L+ MY K      ++ A K+F  +++ 
Sbjct: 262 SACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKN 321

Query: 263 DVVTWNAMISGYAQHGKGE-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           DV++W A+ISGY Q G  E K + LF +M +E +KP+ IT+ ++L AC +    D G Q 
Sbjct: 322 DVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQV 381

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              ++     AA       +V +   +G + EA  +  ++
Sbjct: 382 HAHVIKSNQAAAHTVG-NALVSMYAESGCMEEARRVFNQL 420



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 161/370 (43%), Gaps = 45/370 (12%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           +L  + D+ +A   F  L  K    W  +IS +VQ +   +A ++FL   E     +  +
Sbjct: 197 MLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYT 256

Query: 104 WSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFG---KVDLAEKLFD 156
            S+MIS   E G +   ++L  +A              ++  Y K      +D A K+F+
Sbjct: 257 MSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFE 316

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
            M   ++++W A+I+GYV++   E+ + +L   M+   I+PN  + SS+L  C+++S   
Sbjct: 317 RMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHD 376

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV---------- 265
            G+QVH  V KS      T    L+SMY + G +E+A ++F ++  + ++          
Sbjct: 377 SGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAP 436

Query: 266 ---------------TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
                          T+ ++IS  A  G   K  +L       G   D     +L+   +
Sbjct: 437 LDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYS 496

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQP 367
             G ++   + F+ + +   I+     +T M+  L + G    A+ L   M     KP  
Sbjct: 497 RCGYLEDACRSFNELKDRNVIS-----WTSMISGLAKHGYAERALSLFHDMILTGVKPND 551

Query: 368 AIFGTLLSAC 377
             +  +LSAC
Sbjct: 552 VTYIAVLSAC 561



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 36/267 (13%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156
           ++++V  +++++ Y  CG +  A  +F  +  ++ +V+WTAM S   + G    AE+   
Sbjct: 81  DRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNG----AER--- 133

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQ 215
                                   + L L+  M+  G+ PNA +L +V   C  H     
Sbjct: 134 ------------------------ESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCL 169

Query: 216 LGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           +G  V  LV K  L   D    + LI M  + GDL  A K+F  +  K VV W  +IS Y
Sbjct: 170 VGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRY 229

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            Q    E+A+ +F    ++G +PD  T  +++ AC   G V LG+Q   S+    G A+ 
Sbjct: 230 VQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-LHSLALRMGFASD 288

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM 361
                 +VD+  ++  + +A+D   K+
Sbjct: 289 ACVSCGLVDMYAKS-NIEQAMDYANKV 314


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/509 (41%), Positives = 308/509 (60%), Gaps = 11/509 (2%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAMISGYIECGQLDKAVE--L 123
           WNT+I G+ +  N   A  L+  M       P+ ++  +     G +   +L + +   +
Sbjct: 88  WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVV 147

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
            +      +    +++  Y   G V  A K+FD+MP K+LV WN++I G+ EN   E+ L
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            L   M   GI+P+  ++ S+L  C+ + +L LGK+ H  + K  L ++  +   L+ +Y
Sbjct: 208 ALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITF 302
            +CG +E+A  LF E+  K+ V+W ++I G A +G G++A+ LF  M+  EG+ P  ITF
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITF 327

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V +L AC+H G+V  G +YF  M  +Y I  + +H+ CMVDLL RAG++ +A + I KMP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMP 387

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            +P   I+ TLL AC VH   DLAE A M +  L P N +G YV L+N+YA+ ++W DV 
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEP-NHSGDYVLLSNMYASEQRWSDVQ 446

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           +IR  M  + V K+PG+S +EVG  VHEF  GD+ HP+   I+ KLKE+  R++L GYVP
Sbjct: 447 KIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVP 506

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
            +      V EE KE  L++HSEK+AIAF LI  P   PIRV KNL+VC DCH A K +S
Sbjct: 507 QISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVS 566

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +  REI+VRD +RFHHFK+G+CSC DYW
Sbjct: 567 KVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 31/231 (13%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V  W  +I GY + G    A  L+ EM            +G+VE               
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRA----------SGFVE--------------- 118

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
                P+  +   +L     ++ ++LG+ +H +V +S           L+ +Y  CGD+ 
Sbjct: 119 -----PDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVA 173

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A K+F ++  KD+V WN++I+G+A++GK E+AL L+ +M  +G+KPD  T V+LL AC 
Sbjct: 174 SAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACA 233

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             G + LG ++   M+   G+         ++DL  R G++ EA  L  +M
Sbjct: 234 KIGALTLGKRFHVYMIK-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 124/259 (47%), Gaps = 13/259 (5%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSA 106
           N  DV +A+  F ++P KD  +WN++I+GF +     +A  L+  M  K    +  +  +
Sbjct: 168 NCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVS 227

Query: 107 MISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           ++S   + G L       V + KV   +++ +   ++  Y + G+V+ A+ LFDEM  KN
Sbjct: 228 LLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 287

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLG-KQV 220
            V+W ++I G   N   ++ ++L + M    G+ P   +   +L  CSH   ++ G +  
Sbjct: 288 SVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYF 347

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGK 279
            ++  +  +         ++ +  + G ++ A +  L++  + +VV W  ++     HG 
Sbjct: 348 RRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGD 407

Query: 280 GEKALRLFDKMKDEGMKPD 298
            +  L    +MK   ++P+
Sbjct: 408 SD--LAELARMKILQLEPN 424



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 18/137 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  K  V WNSV+ GFA + GK ++A  L+ ++     +PD   + I+    LL++   +
Sbjct: 182 MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMDLKGIKPD--GFTIV---SLLSACAKI 235

Query: 57  AAFDFFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            A    +R  +        ++  S N ++  + +   + +A+ LF  M +KNSVSW+++I
Sbjct: 236 GALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 109 SGYIECGQLDKAVELFK 125
            G    G   +A+ELFK
Sbjct: 296 VGLAVNGLGKEAIELFK 312



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC----KCGDLEDACKLFLEIQ 260
           LL    +SSL   +Q+H    ++ +      L   +  Y         +  A K+F +I+
Sbjct: 21  LLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIE 80

Query: 261 RK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLG 318
           +  +V  WN +I GYA+ G    A+ L+ +M+  G ++PD+ T+  LL A      V LG
Sbjct: 81  KPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLG 140

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            +   S+V   G  +       ++ L    G +  A  +  KMP K
Sbjct: 141 -ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK 185


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 327/571 (57%), Gaps = 15/571 (2%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA 71
           +++ +AK R  L D + LFD+ P+ D+  Y+ +L+ +  +S+         +R+   D  
Sbjct: 44  LVSAYAKSR-LLPDTRLLFDETPRRDLHLYSSLLAAVS-HSESPELVLPLLRRMLSADAL 101

Query: 72  SWNTMISGFVQKKNMAKARDL---------FLAMP-EKNSVSWSAMISGYIECGQLDKAV 121
             +  +   +     A+ R L         F+A P   + V  S++I  Y +CG  D A 
Sbjct: 102 RPDHFVLASIASAT-ARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDAR 160

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++F     K+ V WTA+ISGY+  G+ D A +LF  MP + L  W A+I+G+V +  +  
Sbjct: 161 KVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVS 220

Query: 182 GLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            +KL   M   G+   +A  LSS + G + L++  LG+Q+H L  +            ++
Sbjct: 221 AVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVV 280

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KC D+  A ++F EI  +D+++W  M+ G AQHG+ E+A  L+D+M   G+KP+ +
Sbjct: 281 DMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEV 340

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFV L+ AC+HAGLV  G Q FDSM  +YGI  +  HYTC +DLL R+G L EA +LI  
Sbjct: 341 TFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITT 400

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP+ P  A + +LLSAC+ +   +++   A NL  L P   +  YV L+N+YA   KWD 
Sbjct: 401 MPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPS-TYVLLSNVYAVNGKWDS 459

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           V  +R  M +  + K PGYSWIEVG     F +G+        I   L+EL   M+  GY
Sbjct: 460 VDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVSEMRQRGY 519

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VPD    +H + E  KE  L  HSE+LA+AFG+++ PLG+ IRV KNLRVC DCH   K+
Sbjct: 520 VPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLRVCNDCHTVMKF 579

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I +R+IIVRD +RFHHF+ G CSC ++W
Sbjct: 580 ISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/621 (38%), Positives = 349/621 (56%), Gaps = 64/621 (10%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS------------DDV 55
           +WN ++A +A Q G  + A  LF  +    V    + LS  LL              +++
Sbjct: 100 SWNILMAAYA-QNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNEL 158

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           +A+    + L I D+   +++I+ + + + + +A   F   PEK+ V W+AMIS Y    
Sbjct: 159 IAS----EALEI-DSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNW 213

Query: 116 QLDKAVELFKVAPVK----------------------------------------SVVAW 135
           +  +A+EL +   ++                                        S V  
Sbjct: 214 RTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVA 273

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +++ Y K G+VD A ++ D MP +  V+W AMIA Y +N  A + + L + M   G  
Sbjct: 274 GTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAE 333

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACK 254
           P+  +L SV+  C+ L +L LGK++H  +  SP   +    L  +I+MY KCG+LE A +
Sbjct: 334 PSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELARE 393

Query: 255 LF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNH 311
           +F  + ++ + VVTW AMI  YAQ+G GE+A+ LF +M  D G +P+ +TF+++L AC+H
Sbjct: 394 VFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSH 453

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI-KKMPFKPQPAIF 370
            G ++   ++F SM  D+G+    DHY C+VDLLGRAG+L EA  L+ +   F+     +
Sbjct: 454 LGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCW 513

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
              LSAC+++  L+ ++ AA  +  L P N AG  V L+N+YAA  +  DVARIR  MK 
Sbjct: 514 IAFLSACQMNGDLERSQRAAKRVSELEPENVAG-RVLLSNVYAAKGRRADVARIRNEMKS 572

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
           + V K  G SWIE+   VHEF   D  HP  + I+ +L+ L + +K AGYVPD +  L  
Sbjct: 573 SGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRD 632

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V EE K QLL +HSE+LA+A G+I  P GT +RV KNLRVC DCH ATK+IS I  R+II
Sbjct: 633 VDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQII 692

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRDT+RFHHFKDG CSCGDYW
Sbjct: 693 VRDTSRFHHFKDGVCSCGDYW 713



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 48/306 (15%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K G +  A+  F  +   N  +WN ++A Y +N        L   M   G+RPN
Sbjct: 73  LVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPN 132

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A +LS+ LL C+   +L LG+++++L+    L  D+   + LI+MY +C ++E+A + F 
Sbjct: 133 AVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFD 192

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
               KDVV W AMIS YA + +  +AL L  +M  EG+K    T+V+LL AC  A  +DL
Sbjct: 193 RSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDAC--ASTMDL 250

Query: 318 --GIQYFD----------------SMVNDYGIAAKPD---------------HYTCMVDL 344
             G+ +                  ++VN YG   + D                +T M+  
Sbjct: 251 RNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAA 310

Query: 345 LGRAGKLVEAVDLIKKMPFK-PQP------------AIFGTLLSACRVHKRLDLAEFAAM 391
             + G   EA++L + M  +  +P            A+ GTL    R+H R+  +   + 
Sbjct: 311 YAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQ 370

Query: 392 NLFNLN 397
           +L  LN
Sbjct: 371 SLMLLN 376



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 157/322 (48%), Gaps = 9/322 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F R+ + +  SWN +++ + Q  +   A  LF  M  +    N+V+ S  +        L
Sbjct: 90  FGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNL 149

Query: 118 DKAVELFKVAPVKSVV----AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               +L ++   +++       +++I+ Y +  +++ AE+ FD  P K++V W AMI+ Y
Sbjct: 150 ALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAY 209

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N      L+L+R M   GI+    +  S+L  C+    L+ G   HQ      L + +
Sbjct: 210 AHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSS 269

Query: 234 TALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
           T +   L+++Y KCG ++DA ++   +  +  V+W AMI+ YAQ+G   +A+ LF  M  
Sbjct: 270 TVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDL 329

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG +P  IT ++++ +C   G + LG +    + +    +        ++ + G+ G L 
Sbjct: 330 EGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLE 389

Query: 353 EAVDLIKKMPFKPQPAIFGTLL 374
            A ++ + +P + +  +  T +
Sbjct: 390 LAREVFECVPLRTRSVVTWTAM 411



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +S+L  C  L  +   +++H  +    L ++T     L+  Y K G L  A   F  I  
Sbjct: 39  ASLLWQCRGLDEV---RKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITL 95

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
            +  +WN +++ YAQ+G    A  LF  M  +G++P+++T    LLAC  A  + LG + 
Sbjct: 96  HNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALG-RK 154

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            + ++    +       + ++ + GR  ++ EA     + P K
Sbjct: 155 LNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEK 197



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 57/317 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+T+V+W +++A +A Q G   +A  LF  +        +I L  + ++S  V+    
Sbjct: 296 MPVRTSVSWTAMIAAYA-QNGNAAEAINLFQCMDLEGAEPSDITLISV-VDSCAVLGTLS 353

Query: 61  FFQRL--PIKDTASW-------NTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMIS 109
             +R+   I+ + S+       N +I+ + +  N+  AR++F  +P   ++ V+W+AMI 
Sbjct: 354 LGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIR 413

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            Y + G  ++A+ELF+                          E L D     N VT+ ++
Sbjct: 414 AYAQNGVGEEAIELFQ--------------------------EMLIDGGTEPNRVTFLSV 447

Query: 170 IA-----GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQ 222
           +      G +E +W         M    G+ P       +  LLG     + +LG+    
Sbjct: 448 LCACSHLGQLEQAWEH----FCSMGPDFGVPPAGDHYCCLVDLLG----RAGRLGEAEKL 499

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLE---DACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           L+       D       +S     GDLE    A K   E++ ++V     + + YA  G+
Sbjct: 500 LLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGR 559

Query: 280 GEKALRLFDKMKDEGMK 296
                R+ ++MK  G+K
Sbjct: 560 RADVARIRNEMKSSGVK 576


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 280/436 (64%), Gaps = 1/436 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           + ++  Y+K G +  A  +F+ +   + V W +MI+G V+N   +  L++   M    + 
Sbjct: 69  SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 128

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  + ++++   S +++L+ G+Q+H  V K     D    T L+ MY KCG++EDA +L
Sbjct: 129 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 188

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++  +++  WNAM+ G AQHG  E+A+ LF  MK  G++PD ++F+ +L AC+HAGL 
Sbjct: 189 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 248

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
               +Y  SM NDYGI  + +HY+C+VD LGRAG + EA  +I+ MPFK   +I   LL 
Sbjct: 249 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 308

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+   ++  +  A  LF L P ++A  YV L+NIYAA  +WDDV   R  MK  NV K
Sbjct: 309 ACRIQGDVEXGKRVAARLFALEPFDSAA-YVLLSNIYAAANRWDDVTDARKMMKRKNVKK 367

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG+SWI+V  ++H F   DR HP+   I++K++E+ K ++  GYVPD EF L  V +E 
Sbjct: 368 DPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE 427

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE+ L +HSEKLAIA+GLI  P  T IRV KNLRVCGDCH A KYIS + +REI++RD  
Sbjct: 428 KERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDAN 487

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHF+DG CSCGDYW
Sbjct: 488 RFHHFRDGVCSCGDYW 503



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M+ GY+  +  +  L+L  ++   G + +  +L++    C  L  L  GKQ+H    K+ 
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              D    + ++ MY KCGD+ +A  +F  I   D V W +MISG   +G  ++ALR++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M+   + PD  TF  L+ A +    ++ G Q   +++      + P   T +VD+  + 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK-LDCVSDPFVGTSLVDMYAKC 179

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
           G + +A  L KKM  +   A++  +L     H   +     A+NLF
Sbjct: 180 GNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNLF 220



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 14/198 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+V A   F  +   D  +W +MISG V   N  +A  ++  M +     +  +++ +I 
Sbjct: 80  DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 139

Query: 110 GYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                  L++  +L     K+  V      T+++  Y K G ++ A +LF +M  +N+  
Sbjct: 140 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 199

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNAM+ G  ++  AE+ + L + M   GI P+  S   +L  CSH     L  + ++ + 
Sbjct: 200 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG---LTSEAYEYLH 256

Query: 226 KSPLCKDTTALTPLISMY 243
             P   +   + P I  Y
Sbjct: 257 SMP---NDYGIEPEIEHY 271



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A+  F+++ +++ A WN M+ G  Q  N  +A +LF +M     E + VS+  ++S    
Sbjct: 185 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 244

Query: 114 CGQLDKAVELFKVAPVK-----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            G   +A E     P        +  ++ ++    + G V  A+K+ + MP K   + N 
Sbjct: 245 AGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINR 304

Query: 169 MIAG 172
            + G
Sbjct: 305 ALLG 308


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 315/546 (57%), Gaps = 33/546 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL----------AMPEKNSVS 103
           DV  AF  F  +    +  WNT+I       ++++  + F+          + P+K++  
Sbjct: 75  DVNYAFRVFDSIENHSSFMWNTLIRACAH--DVSRKEEAFMLYRKMLERGESSPDKHTFP 132

Query: 104 W----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +     A I G+ E  Q+    ++ K      V     +I  Y   G +DLA K+FDEMP
Sbjct: 133 FVLKACAYIFGFSEGKQVH--CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 190

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            ++LV+WN+MI   V     +  L+L R M      P+  ++ SVL  C+ L SL LG  
Sbjct: 191 ERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTW 249

Query: 220 VHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
            H  + +     +  D      LI MYCKCG L  A ++F  +Q++D+ +WNAMI G+A 
Sbjct: 250 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 309

Query: 277 HGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           HG+ E+A+  FD+M D  E ++P+S+TFV LL+ACNH G V+ G QYFD MV DY I   
Sbjct: 310 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 369

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC-RVHKRLDLAEFAAMNL 393
            +HY C+VDL+ RAG + EA+D++  MP KP   I+ +LL AC +    ++L+E  A N+
Sbjct: 370 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 429

Query: 394 FNL------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
                    +  N +G YV L+ +YA+  +W+DV  +R  M E+ + K PG S IE+  +
Sbjct: 430 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 489

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA--LHAVGEEVKEQLLLFHSE 505
            HEF +GD  HP+   I+++LK ++ R++  GY+PD   A  + A  +  KE  L  HSE
Sbjct: 490 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 549

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           +LAIAFGLI +P  TPIR+FKNLRVC DCH  TK IS +   EIIVRD  RFHHFKDG+C
Sbjct: 550 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 609

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 610 SCLDYW 615



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 10/255 (3%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMMIGLG-IRPNASSLS 202
           F  V+ A ++FD +   +   WN +I     + S  E+   L R M+  G   P+  +  
Sbjct: 73  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 132

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  +
Sbjct: 133 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 192

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
            +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG    
Sbjct: 193 SLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAH 251

Query: 323 DSMVN--DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             ++   D  +A        ++++  + G L  A  + + M  K   A +  ++     H
Sbjct: 252 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATH 310

Query: 381 KRLDLAEFAAMNLFN 395
            R +     AMN F+
Sbjct: 311 GRAE----EAMNFFD 321



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+++FD++P+  +V                                SWN+MI   
Sbjct: 177 GCLDLARKVFDEMPERSLV--------------------------------SWNSMIDAL 204

Query: 81  VQKKNMAKARDLFLAMP---EKNSVSWSAMIS-----GYIECGQLDKAVELFK--VAPVK 130
           V+      A  LF  M    E +  +  +++S     G +  G    A  L K  V    
Sbjct: 205 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 264

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V+   ++I  Y K G + +AE++F  M  ++L +WNAMI G+  +  AE+ +     M+
Sbjct: 265 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 324

Query: 191 GL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYC 244
                +RPN+ +   +L+ C+H   +  G+Q   ++ +     P  +    +  LI+   
Sbjct: 325 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA--- 381

Query: 245 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
           + G + +A  + + +  K D V W +++    + G
Sbjct: 382 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG 416


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/527 (39%), Positives = 305/527 (57%), Gaps = 42/527 (7%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-------------KVAPVKS- 131
           +  AR +   MPEKN VSW+AMIS Y + G   +A+ +F               A V + 
Sbjct: 102 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTS 161

Query: 132 ----------------VVAW---------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                           +V W         ++++  Y K G+++ A ++F+ +P +++V+ 
Sbjct: 162 CIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSC 221

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            A+IAGY +    E+ L++ + +   G+RPN  + +S+L   S L+ L  GKQ H  V +
Sbjct: 222 TAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLR 281

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L         LI MY KCG+L  A +LF  +  +  ++WNAM+ GY++HG G + L L
Sbjct: 282 RELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL 341

Query: 287 FDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTCMVDL 344
           F  M+DE  +KPD++T +A+L  C+H  + D G+  +D MV  +YGI    +HY C+VD+
Sbjct: 342 FRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDM 401

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG++ EA + IK+MP KP   + G+LL ACRVH  +D+ E+    L  + P NA G 
Sbjct: 402 LGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENA-GN 460

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+N+YA+  +W+DV  +R  M +  V K PG SWI+    +H F + DR HP    +
Sbjct: 461 YVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEV 520

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
             K+KE+  +MK AGYVPD+   L+ V EE KE++LL HSEKLA+ FGLI    G PIRV
Sbjct: 521 LAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRV 580

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           FKNLR+C DCH   K  S + +RE+ +RD  RFH    G CSCGDYW
Sbjct: 581 FKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 12/225 (5%)

Query: 145 FGKVDL---AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           +GK D    A K+ DEMP KN+V+W AMI+ Y +   + + L +   M+    +PN  + 
Sbjct: 96  YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTF 155

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           ++VL  C   S L LGKQ+H L+ K          + L+ MY K G +E+A ++F  +  
Sbjct: 156 ATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPE 215

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+  A+I+GYAQ G  E+AL +F +++ EGM+P+ +T+ +LL A +   L+D G Q 
Sbjct: 216 RDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQA 275

Query: 322 FDSMVND----YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
              ++      Y +         ++D+  + G L  A  L   MP
Sbjct: 276 HCHVLRRELPFYAVLQNS-----LIDMYSKCGNLSYAQRLFDNMP 315



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  + L  + F   P   L T+   I+    N   ++ L     M+ LG         ++
Sbjct: 2   FNLMRLIHRSFSSSPNSVLQTFRP-ISQLCSNGRLQEALL---EMVMLGPEIGFHCYDAL 57

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C    +L+ G++VH  + K+     T   T L+  Y KC  LEDA K+  E+  K+V
Sbjct: 58  LNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 117

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V+W AMIS Y+Q G   +AL +F +M     KP+  TF  +L +C  A  + LG Q    
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ-IHG 176

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++  +   +     + ++D+  +AG++ EA ++ + +P
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP 214



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 30/225 (13%)

Query: 7   VNWN---------SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVV 56
           V WN         S+L  +AK  G++++A+E+F+ +P+ DVVS   I+     L  D+  
Sbjct: 179 VKWNYDSHIFVGSSLLDMYAKA-GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDE-- 235

Query: 57  AAFDFFQRLPIKDT-------ASWNTMISG--FVQKKNMAKARDLFLAMPEKNSVSWSAM 107
            A + FQRL  +         AS  T +SG   +     A    L   +P   +V  +++
Sbjct: 236 EALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP-FYAVLQNSL 294

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG----KVDLAEKLFDEMPTK-N 162
           I  Y +CG L  A  LF   P ++ ++W AM+ GY K G     ++L   + DE   K +
Sbjct: 295 IDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 354

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVL 205
            VT  A+++G       + GL +   M+    GI+P+      ++
Sbjct: 355 AVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIV 399


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/537 (40%), Positives = 317/537 (59%), Gaps = 40/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           +++I  +   +++A A+ LF A+ E   V W+A+I+ Y++ G   + VE+FK        
Sbjct: 158 SSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVA 217

Query: 126 ---VAPVKSVVA-----------W-----------------TAMISGYMKFGKVDLAEKL 154
              +  V  V A           W                 TA+I  Y K G++  A +L
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRL 277

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD M ++++V W+AMI+GY +     + L L   M    + PN  ++ SVL  C+ L +L
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGAL 337

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GK VH  + +  L       T L+  Y KCG ++DA + F  +  K+  TW A+I G 
Sbjct: 338 ETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGM 397

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A +G+G +AL LF  M+   ++P  +TF+ +L+AC+H+ LV+ G ++FDSM  DYGI  +
Sbjct: 398 ATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPR 457

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY C+VDLLGRAG + EA   I+ MP +P   I+  LLS+C VHK +++ E A   + 
Sbjct: 458 AEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIV 517

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
           +LNP++ +G Y+ L+NIYA++ +W + A IR  MK+  + K PG S IE+  VV EF + 
Sbjct: 518 SLNPSH-SGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAE 576

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  HP+L  I++K++E+  R+K+AGY+P+       V E  KE  +  HSEKLAIAFGL+
Sbjct: 577 DSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLM 636

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           K+  G  IR+ KNLRVC DCH ATK IS +  REI+VRD  RFHHFKDGTCSC DYW
Sbjct: 637 KLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 5/252 (1%)

Query: 151 AEKLFDEMPTKNLVT--WNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLG 207
           A  LF   P   L T  +N ++   +     ED L L   M+ +  + P+  +++  L  
Sbjct: 69  AVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKS 128

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           CS + +L +G+ +     K  L  D   L+ LI MY  C D+  A  LF  ++   VV W
Sbjct: 129 CSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMW 188

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NA+I+ Y ++G   + + +F  M + G+  D IT V+++ AC   G   LG ++    V+
Sbjct: 189 NAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG-KWVAEYVD 247

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK-RLDLA 386
           + G+    +  T ++D+  + G+L +A  L   M  +   A    +    +  + R  LA
Sbjct: 248 EKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALA 307

Query: 387 EFAAMNLFNLNP 398
            F+ M L  + P
Sbjct: 308 LFSEMQLAEVEP 319


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/568 (39%), Positives = 332/568 (58%), Gaps = 25/568 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  AQ +F+ I  P+   +N ++     NSD+   AF  +Q++ +  +   N+    F
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRA-YSNSDEPELAFLSYQQM-LSSSVPHNSYTFPF 93

Query: 81  VQKKNMAKARDLFLAMPEKNSV--------------SWSAMISGYIECGQLDKAVELFKV 126
           +    +   R+L LAM E   V              + +A++  Y  CG++  A +LF  
Sbjct: 94  L----LRACRNL-LAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDN 148

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P +  V+W  MI GY+K G V  A  +F +MP KN+V+W ++I+G VE   + + L L 
Sbjct: 149 IPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLC 208

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   +  +++S+L  C++L +L  G+ +H  V  + +  D      L++MY KC
Sbjct: 209 YEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKC 268

Query: 247 GDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           GD+E+A  +F  L+  +KDV  W AMI G+A HG+G +AL  F++M+ EG++P+SITF A
Sbjct: 269 GDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTA 328

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC++ GLV+ G + F SM   Y +    +HY CMVDLLGR+G+L EA +LIKKMP K
Sbjct: 329 VLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMK 388

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P   I+G LL AC +H+   L      +L  ++ ++ +G Y+QLA I AA  KW + A +
Sbjct: 389 PSAVIWGALLKACWIHRDFLLGSQVGAHLVEVD-SDHSGRYIQLATILAAEGKWKEAAEV 447

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPD 483
           RL MK   V   PG S + +  +VHEF +G + HP++  I  KLK++ +R++   GY P 
Sbjct: 448 RLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPA 507

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
            +  L  +  E KE  +  HSEKLAIAFGLI    GT IRV KNLR+C DCH   K +S 
Sbjct: 508 TKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQ 567

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  REII+RD  RFHHF+DG+CSC DYW
Sbjct: 568 IYSREIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 315/546 (57%), Gaps = 33/546 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL----------AMPEKNSVS 103
           DV  AF  F  +    +  WNT+I       ++++  + F+          + P+K++  
Sbjct: 155 DVNYAFRVFDSIENHSSFMWNTLIRACAH--DVSRKEEAFMLYRKMLERGESSPDKHTFP 212

Query: 104 W----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +     A I G+ E  Q+    ++ K      V     +I  Y   G +DLA K+FDEMP
Sbjct: 213 FVLKACAYIFGFSEGKQVH--CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 270

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            ++LV+WN+MI   V     +  L+L R M      P+  ++ SVL  C+ L SL LG  
Sbjct: 271 ERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTW 329

Query: 220 VHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
            H  + +     +  D      LI MYCKCG L  A ++F  +Q++D+ +WNAMI G+A 
Sbjct: 330 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 389

Query: 277 HGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           HG+ E+A+  FD+M D  E ++P+S+TFV LL+ACNH G V+ G QYFD MV DY I   
Sbjct: 390 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 449

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC-RVHKRLDLAEFAAMNL 393
            +HY C+VDL+ RAG + EA+D++  MP KP   I+ +LL AC +    ++L+E  A N+
Sbjct: 450 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 509

Query: 394 FNL------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
                    +  N +G YV L+ +YA+  +W+DV  +R  M E+ + K PG S IE+  +
Sbjct: 510 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 569

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA--LHAVGEEVKEQLLLFHSE 505
            HEF +GD  HP+   I+++LK ++ R++  GY+PD   A  + A  +  KE  L  HSE
Sbjct: 570 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 629

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           +LAIAFGLI +P  TPIR+FKNLRVC DCH  TK IS +   EIIVRD  RFHHFKDG+C
Sbjct: 630 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 689

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 690 SCLDYW 695



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 10/255 (3%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMMIGLG-IRPNASSLS 202
           F  V+ A ++FD +   +   WN +I     + S  E+   L R M+  G   P+  +  
Sbjct: 153 FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 212

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  +
Sbjct: 213 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 272

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
            +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG    
Sbjct: 273 SLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAH 331

Query: 323 DSMVN--DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             ++   D  +A        ++++  + G L  A  + + M  K   A +  ++     H
Sbjct: 332 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATH 390

Query: 381 KRLDLAEFAAMNLFN 395
            R +     AMN F+
Sbjct: 391 GRAE----EAMNFFD 401



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+++FD++P+  +V                                SWN+MI   
Sbjct: 257 GCLDLARKVFDEMPERSLV--------------------------------SWNSMIDAL 284

Query: 81  VQKKNMAKARDLFLAMP---EKNSVSWSAMIS-----GYIECGQLDKAVELFK--VAPVK 130
           V+      A  LF  M    E +  +  +++S     G +  G    A  L K  V    
Sbjct: 285 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 344

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V+   ++I  Y K G + +AE++F  M  ++L +WNAMI G+  +  AE+ +     M+
Sbjct: 345 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 404

Query: 191 GL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYC 244
                +RPN+ +   +L+ C+H   +  G+Q   ++ +     P  +    +  LI+   
Sbjct: 405 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA--- 461

Query: 245 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
           + G + +A  + + +  K D V W +++    + G
Sbjct: 462 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG 496


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/438 (43%), Positives = 277/438 (63%), Gaps = 3/438 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A++  Y K  +   A  +FDEMP +++V+W +++ G   +   +  L++ R M+  G+ 
Sbjct: 78  NALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVG 137

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  ++++ L  C+  ++L+LG+ VH    +  L    +    L+SMY K G L +A K+
Sbjct: 138 PDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKV 197

Query: 256 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           F    + R D +TW A+I GYAQ+G+G ++L ++  M   G +PD +TF+ LL AC+HAG
Sbjct: 198 FDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAG 257

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G  +F SM  ++GIA   DHY CMVDLLGRAG+L EA+DL+ +   +    ++  L
Sbjct: 258 LVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKAL 317

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L+ACR H+  +LAE AA  ++ L+P +A   YV L+N+Y+   +W DVAR+R SMK   +
Sbjct: 318 LAACRTHRNAELAEHAAAMVWRLDPTDAVP-YVMLSNLYSRAGRWGDVARVRTSMKARGI 376

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG SW+    V H F   DR HP    ++ K++E+ +R++  GYV D  +AL   G 
Sbjct: 377 TKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGYVADTAWALQDEGP 436

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E +E+ L  HSE+LA+AFGL+ VP G PIRVFKNLRVCGDCH A K ++    REI++RD
Sbjct: 437 EGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKMVAQAYGREIVLRD 496

Query: 554 TTRFHHFKDGTCSCGDYW 571
           +  FHH KDG CSCGDYW
Sbjct: 497 SNCFHHMKDGACSCGDYW 514



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVHQ 222
           V +NA I+        +  L LL  M   G R +  +L   L   +  + L+L    +H 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPAL---NSAALLRLPADALHS 63

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+ ++ L         L+  Y K      A  +F E+ R+DVV+W ++++G A+    + 
Sbjct: 64  LLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDS 123

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           AL+++  M   G+ PD     A L +C  A  ++LG
Sbjct: 124 ALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELG 159


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 341/618 (55%), Gaps = 50/618 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----------------------DKIPQPDV 38
           M+ +  ++WNSV+AG A Q G   +A  LF                        +P+   
Sbjct: 376 MSERDLISWNSVIAGIA-QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLS 434

Query: 39  VSYNIMLSCILLN--SDDVVA---------------AFDFFQRLPIKDTASWNTMISGFV 81
           +S  + +  I +N  SD  V+               A   F+R    D  +WN M++G+ 
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493

Query: 82  QKKNMAKARDLFLAMPEKNSVSWS-AMISGYIECGQL-----DKAVELFKVAPVKSVVAW 135
           Q  +  K   LF  M ++   S    + + +  CG L      K V  + +     +  W
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553

Query: 136 --TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             + ++  Y+K G +  A+  FD +P  + V W  MI+G +EN   E    +   M  +G
Sbjct: 554 VSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG 613

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P+  +++++    S L++L+ G+Q+H    K     D    T L+ MY KCG ++DA 
Sbjct: 614 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAY 673

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            LF  I+  ++  WNAM+ G AQHG+G++ L+LF +MK  G+KPD +TF+ +L AC+H+G
Sbjct: 674 CLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV    ++  SM  DYGI  + +HY+C+ D LGRAG + +A +LI+ M  +   +++ TL
Sbjct: 734 LVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTL 793

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L+ACRV    +  +  A  L  L P +++  YV L+N+YAA  KWD++   R  MK + V
Sbjct: 794 LAACRVQGDTETGKRVATKLLELEPLDSSA-YVLLSNMYAAASKWDEMKLARTMMKGHKV 852

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG+SWIEV   +H F   DR + +   I+ K+K++ + +K  GYVP+ +F L  V E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE+ L +HSEKLA+AFGL+  P  TPIRV KNLRVCGDCH A KYI+ +  REI++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFH FKDG CSCGDYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 191/448 (42%), Gaps = 67/448 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL-----NSDDVVAAFDFFQRLPIKDTASWNT 75
           GK+K+ + LF+++P  DVV +N+ML   L       + D+ +AF      P + T     
Sbjct: 194 GKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLA 253

Query: 76  MISG----FVQKKNMAKARDL---------------FLAMPEKNSV--SWSAMISGYIEC 114
            ISG      Q K+ A   D                +L   + +++   ++ M+   +EC
Sbjct: 254 RISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVEC 313

Query: 115 GQLDKAVELFKVAPVKSV-------------------VAWTAMISGYMKFGKVDLAEKLF 155
            Q+   + L     V S+                       ++I+ Y K  K   A  +F
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSL 214
           D M  ++L++WN++IAG  +N    + + L   ++  G++P+  +++SVL   S L   L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
            L KQVH    K     D+   T LI  Y +   +++A  LF E    D+V WNAM++GY
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGY 492

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            Q   G K L+LF  M  +G + D  T   +   C     ++ G Q     V+ Y I + 
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ-----VHAYAIKSG 547

Query: 335 PDH----YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA--EF 388
            D      + ++D+  + G +  A      +P  P    + T++S C  +   + A   F
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVF 606

Query: 389 AAMNLFNLNP--------ANAAGCYVQL 408
           + M L  + P        A A+ C   L
Sbjct: 607 SQMRLMGVLPDEFTIATLAKASSCLTAL 634



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 20/323 (6%)

Query: 7   VNWNSVLAGFAKQRG----KLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAF 59
           V+WNS+LA +A+        ++ A  LF  + Q  V +  + LS +L   L+S  V A+ 
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS- 164

Query: 60  DFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           + F     K     +  ++G     +++   + + + LF  MP ++ V W+ M+  Y+E 
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224

Query: 115 GQLDKAVELFK------VAPVKSVVAWTAMISGY-MKFGKVDLAEKLFDEMPTKNLVTWN 167
           G  ++A++L        + P +  +   A ISG     G+V       D      ++  N
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
             ++ Y+ +      LK    M+   +  +  +   +L     + SL LG+QVH +  K 
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L    T    LI+MYCK      A  +F  +  +D+++WN++I+G AQ+G   +A+ LF
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404

Query: 288 DKMKDEGMKPDSITFVALLLACN 310
            ++   G+KPD  T  ++L A +
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 5/170 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA-----EDGLKLLRMMIGL 192
           +IS Y K G +  A ++FD+MP ++LV+WN+++A Y ++S       +    L R++   
Sbjct: 80  LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            +  +  +LS +L  C H   +   +  H    K  L  D      L+++Y K G +++ 
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEG 199

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
             LF E+  +DVV WN M+  Y + G  E+A+ L       G+ P+ IT 
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           S L LGK  H  +       +   +  LISMY KCG L  A ++F ++  +D+V+WN+++
Sbjct: 53  SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 272 SGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           + YAQ  +      ++A  LF  ++ + +    +T   +L  C H+G V    + F    
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYA 171

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              G+         +V++  + GK+ E   L ++MP++
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR 209


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/435 (46%), Positives = 279/435 (64%), Gaps = 1/435 (0%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+++ Y++ G ++ A K+FD M   +  +W  MI    EN    + L+L   M   GI P
Sbjct: 16  ALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIPP 75

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
            + +L+SVL  C+   +L++GKQ+H  +  S       A T L+ MY KCG LE + K+F
Sbjct: 76  TSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVF 135

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ ++ V+W AMI+  AQHG+G++AL LF +M  EGM  D+ TF+ +L AC+HAGL+ 
Sbjct: 136 TAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIK 195

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
             +++F SMV DY IA    HY   +D +GRAG+L +A +LI  MPF P+   + TLL+A
Sbjct: 196 ESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNA 255

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR+H + + A   A  L  L P ++   Y  L N+YAA +++ D  R+R SM +  + K+
Sbjct: 256 CRIHSQAERATKVAELLAKLAPEDSMA-YTLLGNVYAATERYGDQMRVRKSMTDRGLKKV 314

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S+IEV   VHEF +GDR HP    I  +L++L  RM+ AGYVP+ +  LHAV EE K
Sbjct: 315 PGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEK 374

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           EQL+  HSEKLAIAFGLI  P GTP+ + KNLRVC DCH ATK I+ I +R I+VRDT R
Sbjct: 375 EQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHR 434

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF+DG CSC DYW
Sbjct: 435 FHHFEDGQCSCKDYW 449



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 53/262 (20%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VA 127
           N +++ +V+  ++ +AR +F AM   ++ SW+ MI+   E  +L +A+ELF       + 
Sbjct: 15  NALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIP 74

Query: 128 PVK---------------------------------SVVAWTAMISGYMKFGKVDLAEKL 154
           P                                   SV+A TA++  Y K G ++ + K+
Sbjct: 75  PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKV 134

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F  M T+N V+W AMIA   ++   ++ L+L + M   G+  +A++   VL  CSH   +
Sbjct: 135 FTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLI 194

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQ-RKDVVT 266
           +       L F   + +D  A+ P  + YC       + G L+DA +L   +    + VT
Sbjct: 195 K-----ESLEFFHSMVED-YAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVT 248

Query: 267 WNAMISGYAQHGKGEKALRLFD 288
           W  +++    H + E+A ++ +
Sbjct: 249 WKTLLNACRIHSQAERATKVAE 270


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/592 (39%), Positives = 333/592 (56%), Gaps = 29/592 (4%)

Query: 3   VKTTVNWNSVLAGFAKQR-----GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV- 56
           V+ +V+ +  +A F  QR     G+L  A  L  + P P  V Y    S I  +S   + 
Sbjct: 48  VRASVDQDKAVA-FRLQRAYAASGRLDLAVALLRRTPDPTAVFYT---SAIHAHSSRGLH 103

Query: 57  -AAFDFFQR--------LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
            AA              LP   T S +    G +          + LA+  +  V+ +A+
Sbjct: 104 RAALALLSEMLLSRHGLLPTAHTLSASLPACGCLAVGRALHGYAVKLALSGEPYVA-TAL 162

Query: 108 ISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           +  Y   G+   A  LF  + P   VV+ TAM+S Y K G++D A  LFD +P K+LV W
Sbjct: 163 LGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCW 222

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF- 225
           NAM+ GY ++    + L+L R M+  G+ P+  S+   L   + L + + G+ +H  V  
Sbjct: 223 NAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVAN 282

Query: 226 ---KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGK 279
              ++ +  +    T L+ MY KCG LE+A  +F ++     +DVV WNAMI+GYA HG+
Sbjct: 283 GGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGR 342

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +AL  F +++ +G+ P  ITF+ +L AC+H+GLVD G   F +M  +YGI  K +HY 
Sbjct: 343 SREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYG 402

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
           CMVDLLGRAG++ EA DL++ M  KP  A++ +LL ACR+HK L L +  A  L     A
Sbjct: 403 CMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLA 462

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
           N+ G YV L+N+YAA  KW +V R+R  M+ + V K PG S +EVG  V EF +GDR HP
Sbjct: 463 NS-GTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHP 521

Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 519
               I+ KL+E+    +  G+VP  E  LH + +  KE+ L  HSEKLA+AFGLI  P  
Sbjct: 522 RSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPR 581

Query: 520 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           T I++ KNLR C DCH   K +S    R+I+ RD  RFHHF DG+CSCGDYW
Sbjct: 582 TGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 330/566 (58%), Gaps = 28/566 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           W +++ G+A Q G L ++   + ++ +  V   +   S  L  +       D       K
Sbjct: 110 WTAMIRGYALQ-GLLSESTNFYTRMRRDGVGPVSFTFSA-LFKACGAALNMDLG-----K 162

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
              +   +I GF        A DL++          ++MI  Y++CG L  A ++F    
Sbjct: 163 QVHAQTILIGGF--------ASDLYVG---------NSMIDLYVKCGFLGCARKVFDEMS 205

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + VV+WT +I  Y K+G ++ A  LFD++P+K++V W AM+ GY +N   ++ L+  + 
Sbjct: 206 ERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQK 265

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKC 246
           M  +G+  +  +L+ V+  C+ L +++    +  +  +S        +  + LI MY KC
Sbjct: 266 MQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC 325

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G  ++A K+F  ++ ++V ++++MI GYA HG+   AL+LF  M    ++P+ +TF+ +L
Sbjct: 326 GSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGIL 385

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+HAGLV+ G Q F  M   +G+A  PDHY CMVDLLGRAG L EA+DL+K MP +P 
Sbjct: 386 SACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPN 445

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL ACR+H   D+A+ AA  LF L P N  G Y+ L+NIYA+  +W++V+++R 
Sbjct: 446 GGVWGALLGACRIHGNPDIAQIAANELFKLEP-NGIGNYILLSNIYASAGRWEEVSKLRK 504

Query: 427 SMKENNVVKMPGYSWIE-VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            ++E    K PG SW E     +H+F +GD  HP    I + LK+L +R++  GY P+L 
Sbjct: 505 VIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLG 564

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
            A + + ++ KE++L+ HSEKLA+A+GL+    G  I++ KN+R+C DCH      S I 
Sbjct: 565 SAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEIT 624

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            REIIVRD  RFHHF +GTCSCG++W
Sbjct: 625 GREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 130/317 (41%), Gaps = 51/317 (16%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F ++   N   W AMI GY       +       M   G+ P + + S++   C    +
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 214 LQLGKQVH--------------------------------QLVFKSPLCKDTTALTPLIS 241
           + LGKQVH                                + VF     +D  + T LI 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y K GD+E A  LF ++  KD+V W AM++GYAQ+G+ ++AL  F KM+D GM+ D +T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 302 FVALLLACNHAGLVDLGIQYFD-SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
              ++ AC   G V       D +  + +G +      + ++D+  + G   EA  + + 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 361 MP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP-----------ANAAGCY 405
           M     F     I G  +   R H  L L  F  M    + P            + AG  
Sbjct: 338 MKERNVFSYSSMILGYAMHG-RAHSALQL--FHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 406 VQLANIYAAMKKWDDVA 422
            Q   ++A M+K+  VA
Sbjct: 395 EQGRQLFAKMEKFFGVA 411



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL--FLE 258
           L S+L  C+  S +   KQVH  + ++ L + +  LT LI M  K      +  L  F +
Sbjct: 45  LMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQ 101

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +   +   W AMI GYA  G   ++   + +M+ +G+ P S TF AL  AC  A  +DLG
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            Q     +   G A+       M+DL  + G L  A  +  +M
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM 204


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/562 (39%), Positives = 322/562 (57%), Gaps = 18/562 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-----TMI 77
           L DA+  FD  P+ D+  Y+ +L+ +  +SD  +      +R+   D    +     ++ 
Sbjct: 52  LPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELV-LPLLRRMLSDDALRPDHFVLASLA 110

Query: 78  SGFVQKKNMAKARDL---FLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S   + +++   R L   F A P   ++V  S++I  Y +CG    A ++F    VK+ V
Sbjct: 111 SAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSV 170

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            WTA+ISGY   G    A  LF  MP   L TW A+I+G+V+       + L   M    
Sbjct: 171 VWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDD 230

Query: 194 IR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           IR  +A  L++V+ G + L++L LG+Q+H  V +            L+ MY KC D+  A
Sbjct: 231 IRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSA 290

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F  I  +DV++W  ++ G AQHG+ E+   L+++M   GMKP+ +TFV L+ AC+HA
Sbjct: 291 REVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHA 350

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV  G Q FDSM  +YG+     HYTC +DLL R+G L EA  LI  MP++P  A +G 
Sbjct: 351 GLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGA 410

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLSAC+ H    +    A NL  L P + +  Y+ L+N+YA   KWD VA++R  M E  
Sbjct: 411 LLSACKKHNDTQMCLRVADNLLELRPKDPS-TYILLSNVYAVNCKWDSVAKVRKIMAEME 469

Query: 433 VVKMPGYSWIEVGTVVHEFRSGD---RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           + K+PGYSW+E G     F +G+    V  E+      L+EL   M+  GYVPD    +H
Sbjct: 470 IRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCF---LEELVSEMRKRGYVPDTSSVMH 526

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            + E  KEQ L  HSE+LA+AFG++K P G+ IRV KNLRVCGDCH   K+ISAI +R+I
Sbjct: 527 DLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISAIAQRKI 586

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           IVRD +RFHHF+DG CSC ++W
Sbjct: 587 IVRDASRFHHFEDGNCSCSEFW 608



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 1/184 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG-LGIRP 196
           ++S Y +   +  A + FD+ P ++L  ++A++A    +S  E  L LLR M+    +RP
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +   L+S+      L SL+LG+Q+H     SP   D    + LI MYCKCG  +DA K+F
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             I  K+ V W A+ISGYA +G   +AL LF  M   G+   +      + A N+ G + 
Sbjct: 162 DSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMG 221

Query: 317 LGIQ 320
           L ++
Sbjct: 222 LFVE 225



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 138/320 (43%), Gaps = 53/320 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK +V W ++++G+A   G   +A +L                               
Sbjct: 164 IGVKNSVVWTALISGYASN-GCTGEALDL------------------------------- 191

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            FQ +P     +W  +ISGFV+  N   A  LF+ M   +     A +   +  G  D A
Sbjct: 192 -FQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLA 250

Query: 121 VELF---------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
             +          ++  + S++   A++  Y K   +  A ++F+ +  +++++W  ++ 
Sbjct: 251 ALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILV 310

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---- 227
           G  ++  AE+   L   M+  G++PN  +   ++  CSH   +Q G+Q+   + +     
Sbjct: 311 GEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMK 370

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRL 286
           P  +  T    L+S   + G L +A KL   +  + D  TW A++S   +H   +  LR+
Sbjct: 371 PGVQHYTCYLDLLS---RSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRV 427

Query: 287 FDKMKDEGMKP-DSITFVAL 305
            D + +  ++P D  T++ L
Sbjct: 428 ADNLLE--LRPKDPSTYILL 445



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           ++VH  + K  L    +A   L+S Y +   L DA + F +  R+D+  ++A+++  +  
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 278 GKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
              E  L L  +M  D+ ++PD     +L  A      + LG Q
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQ 124


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 325/551 (58%), Gaps = 28/551 (5%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD+IP P+ V    M S  + N + V      F+ +    +A       G V + 
Sbjct: 142 DARRAFDEIPTPNPVIVTAMASGCMRN-NLVYTTLSIFRSMVASGSA-------GVVDEA 193

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
               A      +P++        I+G I    L   + L     V + +     I  Y K
Sbjct: 194 AALVALSASARVPDRG-------ITGGIHA--LVSKIGLDGQTGVANTI-----IDAYAK 239

Query: 145 FGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNASS 200
            G  DL  A KLFD M  +++V+WN MIA Y +N  + + L L   M+ +G  +R NA +
Sbjct: 240 GGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVT 298

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           LS+VLL C+H  ++Q GK++H  V +  L  +    T ++ MY KCG +E A K F +I+
Sbjct: 299 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIK 358

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            K++++W+AMI+GY  HG G++AL +F  M+  G+KP+ ITF+ +L AC+HAGL+  G  
Sbjct: 359 GKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRY 418

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           ++++M  ++GI    +HY CMVDLLGRAG L EA  LIK+M  KP  A++G LLSACR++
Sbjct: 419 WYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIY 478

Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
           K ++LA+  A  LF L+  N +G YV L+NIYA    W +V R+R+ +K   + K PGYS
Sbjct: 479 KNVELAKICAERLFELDATN-SGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYS 537

Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
            +E+    H F  GD+ HP+   I+  L++L +R+  AGYVP+    LH +  E +E +L
Sbjct: 538 SVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESML 597

Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
             HSEKLA+AF L+    G+ I V KNLRVC DCH A K I+ +  REII+RD  RFHHF
Sbjct: 598 RIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHF 657

Query: 561 KDGTCSCGDYW 571
           KDG CSCGDYW
Sbjct: 658 KDGLCSCGDYW 668



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 119/282 (42%), Gaps = 58/282 (20%)

Query: 10  NSVLAGFAKQRGK-LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           N+++  +AK  G  L  A++LFD + + DVVS+N M++    N     A   + + L + 
Sbjct: 231 NTIIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIALYAQNGLSTEALGLYSKMLIVG 289

Query: 69  DTASWNTMI----------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                N +           +G +Q       + + + + E N    ++++  Y +CG+++
Sbjct: 290 GDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGL-EDNVYVGTSVVDMYSKCGKVE 348

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
            A + F+    K++++W+AMI+GY   G                               +
Sbjct: 349 MAWKAFQKIKGKNILSWSAMIAGYGMHG-------------------------------Y 377

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            ++ L +   M   G++PN  +  +VL  CSH   L  G+  +  +      K    + P
Sbjct: 378 GQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTM------KTEFGIEP 431

Query: 239 LISMY-C------KCGDLEDACKLFLEIQRK-DVVTWNAMIS 272
            +  Y C      + G L++A  L  E++ K D   W A++S
Sbjct: 432 GVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLS 473


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/495 (42%), Positives = 301/495 (60%), Gaps = 8/495 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--VA---- 127
           ++ IS + +      A  +F  M  ++ VSW+AMISG+   G   +A+++F+  VA    
Sbjct: 51  HSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCP 110

Query: 128 -PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P    +A      G  +   + L + +FDEM  K L++WNAM+A Y  N    + ++L 
Sbjct: 111 KPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELF 170

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   GI P+A +L++VL  C  +S+L LGK++H+++ +  +C        L+ MY  C
Sbjct: 171 MRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANC 230

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L++A  +F  +  +DVV+W ++IS Y +HG G +A+ LF+KM  +G++PDSI FVA+L
Sbjct: 231 GCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAIL 290

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+HAGL+D+G  YF SM +++ IA K +HY CMVDLLGRAG + EA D I  MP KP 
Sbjct: 291 AACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPN 350

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL ACR+H  +D+   AA +L  L P    G YV L+NIYA   +W DV+ +R 
Sbjct: 351 ERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ-TGYYVLLSNIYARAGRWADVSMVRS 409

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M+   + K+PG S  E+G  VH F  GD  HP+   I++KL EL +R++  GY P++E 
Sbjct: 410 VMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEA 469

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V EE KE  L  HSEKLAIAF LI    GTPIR+  NLR C DCH A K IS I  
Sbjct: 470 TLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAG 529

Query: 547 REIIVRDTTRFHHFK 561
           REII++D  R H+ K
Sbjct: 530 REIILKDVNRIHYMK 544



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 167/385 (43%), Gaps = 60/385 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSY-NIMLSCILLNSDD 54
           M  +  V+WN++++GFA   G    A ++F ++     P+PD  +  +I+ S      +D
Sbjct: 73  MQYRDVVSWNAMISGFA-HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED 131

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           +      F  +  K   SWN M++ +   +   +A +LF+ M     E ++V+ + ++  
Sbjct: 132 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 191

Query: 111 YIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             E   L     + +V   +    S++   A++  Y   G +  A  +FD M T+++V+W
Sbjct: 192 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 251

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+ Y  +    + + L   M G G+ P++ +  ++L  CSH   L +GK        
Sbjct: 252 TSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY------ 305

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                           Y    +   A KL           +  M+    + G   +A   
Sbjct: 306 ---------------FYSMTSEFHIAPKL---------EHYACMVDLLGRAGCIREA--- 338

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLL 345
           +D +    +KP+   + ALL AC     +D+G+   DS++    +A K   +Y  + ++ 
Sbjct: 339 YDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLR---LAPKQTGYYVLLSNIY 395

Query: 346 GRAGK-----LVEAV---DLIKKMP 362
            RAG+     +V +V     IKK+P
Sbjct: 396 ARAGRWADVSMVRSVMESKGIKKLP 420



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 34/256 (13%)

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G G+ P    L      C+    L LG+Q+H    +  L  +       ISMY +CG  +
Sbjct: 5   GPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPD 64

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 309
           DA ++F E+Q +DVV+WNAMISG+A  G   +A+ +F ++   +  KPD+ T  ++L + 
Sbjct: 65  DAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSM 124

Query: 310 NHAGLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FK 364
             A + D+ +    FD M     I+     +  M+ +       VEAV+L  +M     +
Sbjct: 125 GKARVEDIALLKGVFDEMRFKGLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGIE 179

Query: 365 PQPAIFGTLLSAC----------RVHKRLD--------LAEFAAMNLFNLNPANAAGCYV 406
           P      T+L +C          R+H+ +         L E A M+++    AN  GC  
Sbjct: 180 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMY----AN-CGCLK 234

Query: 407 QLANIYAAMKKWDDVA 422
           +  +++ +M   D V+
Sbjct: 235 EARDVFDSMGTRDVVS 250


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 279/440 (63%), Gaps = 1/440 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VV+WT M+ G  + G VD A ++FD MP +NLV+WN+MI+GYV+     D L++   M  
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRA 223

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           LG+  N    +S L+ C+   +L  G+++++ V +S +  D    T ++ MYCKCG +++
Sbjct: 224 LGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDE 283

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F  +  + + TWN MI G+A HG+ + AL LF +M+  G+ PD +T + +L AC H
Sbjct: 284 AWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAH 343

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AG V  G +Y + +V+ +GI  K +HY CMVDL GRAG+L EA  +I +MP  P  A+ G
Sbjct: 344 AGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLG 403

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL AC++H  +DL E     + +L+P N +G YV LAN+ A   +WD+V ++R  M E 
Sbjct: 404 ALLGACKIHGDVDLGEAIGWRVIDLDPDN-SGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
           NV K  G S IEV     EFR G+  HP+   I+    ++  R++  GYVPD   ALH V
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE  LL HSEKLAIAFGL++      +R+ KNLRVC DCH ATKY+S +  REI+V
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD +RFHHFKDG CSC DYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 145/330 (43%), Gaps = 54/330 (16%)

Query: 37  DVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           DVVS+  M+   C L   DD   A + F  +P ++  SWN+MISG+V+      A ++F 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDD---AREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFD 219

Query: 95  AMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFG 146
            M     E N    ++ +      G L +  E+++      +       TA++  Y K G
Sbjct: 220 EMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCG 279

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            VD A ++FD +P + L TWN MI G+  +   +D L+L   M   G+ P+  +L +VL 
Sbjct: 280 CVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLT 339

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+H   +  G++                L  ++S +               I+ K    
Sbjct: 340 ACAHAGEVSEGRRY---------------LNHIVSRH--------------GIEPKG-EH 369

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +  M+  + + G+ ++A ++ D+M    M PD     ALL AC   G VDLG       +
Sbjct: 370 YGCMVDLFGRAGQLDEAKKVIDEMP---MDPDLAVLGALLGACKIHGDVDLG-----EAI 421

Query: 327 NDYGIAAKPDH---YTCMVDLLGRAGKLVE 353
               I   PD+   Y  + +LL  AG+  E
Sbjct: 422 GWRVIDLDPDNSGRYVLLANLLAGAGRWDE 451


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/473 (43%), Positives = 291/473 (61%), Gaps = 2/473 (0%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +S   +A++S Y   G    A  LF   P   VV+ TAM++ Y   G +D A +LFD +P
Sbjct: 153 DSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLP 212

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            K+ + WNAMI GY ++    + L+L R M+     P+  ++  VL   + L +++ GK 
Sbjct: 213 RKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKW 272

Query: 220 VHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           +H  V  S   + +    T L+ MYCKCG LEDA  +F  I  KD+V WNAMI+GYA HG
Sbjct: 273 LHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHG 332

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
              KAL +F +++D+G+ P  ITF+ LL AC+H+GLV+ G  +F SM ++YGI  K +HY
Sbjct: 333 DSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHY 392

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            CMVDLLGRAG + EA  L++ +   P   ++ +LL+ACR+HK + L +  A  L     
Sbjct: 393 GCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGL 452

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
           AN+ G Y+ L+NIYAA+ KW++VAR+R  MK + + K PG S IE+   V+EF +GD  H
Sbjct: 453 ANS-GMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSH 511

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 518
           P    I+  L ++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGLI    
Sbjct: 512 PCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRP 571

Query: 519 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           G+ I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 572 GSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 105/246 (42%), Gaps = 34/246 (13%)

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y   G++D +  L         + + + I  +        GL LL  M+  G+ P A +
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHT 124

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY----------------- 243
           LS+ L  C  LS   LG+ +H   FK  L  D+   T L+SMY                 
Sbjct: 125 LSASLPACRGLS---LGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMP 181

Query: 244 --------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                            G L+DA +LF  + RKD + WNAMI GY QHGK  +AL+LF +
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M     +PD +T V +L A    G V+ G      + N   +       T +VD+  + G
Sbjct: 242 MLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCG 301

Query: 350 KLVEAV 355
            L +AV
Sbjct: 302 SLEDAV 307


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 293/470 (62%), Gaps = 4/470 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           ++MI  YI+CG L+   ++F   P + V++WT +IS Y+K G ++ A +LFD +P K++V
Sbjct: 186 NSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMV 245

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            W  M++G+ +N+   + +     M   G+  +  +L  V+  C+ L + +    +  + 
Sbjct: 246 AWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVA 305

Query: 225 FKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            KS      + +  + LI MY KCG + DA ++F  ++ ++V ++++MI G+A HG+   
Sbjct: 306 EKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHD 365

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A++LFD+M    +KP+ +TF+ +L AC+HAG+V+ G Q F+ M   YGI    DHYTCMV
Sbjct: 366 AMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMV 425

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DLLGRAG+L EA +L+K MP +P   ++G LL ACR+HK  D+A  AA +LF L P    
Sbjct: 426 DLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPY-CI 484

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT-VVHEFRSGDRVHPEL 461
           G Y+ LANIYA+  +W+DV+ +R  M+   + K P +SWIE    +VHEF SGD  HP  
Sbjct: 485 GNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRS 544

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             I + L++L  R++  GY P L    + V +E K ++L+ HSEKLA+AFGLI    G+ 
Sbjct: 545 GEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSK 604

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IR+ KNLR+C DCH      S I  REIIVRD  RFHHF DG CSCG++W
Sbjct: 605 IRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 12/246 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+  +++FD++P  DV+S+  ++S   + S ++ +A + F  LP+KD  +W  M+SGF
Sbjct: 196 GFLECGRKVFDEMPNRDVISWTELISA-YVKSGNMESAGELFDGLPVKDMVAWTVMVSGF 254

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKA---------VELFKVAPVK 130
            Q     +A   F  M E    +    + G I  C QL  A          E  +     
Sbjct: 255 AQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKH 314

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           SVV  +A+I  Y K G V  A ++F  M  +N+ ++++MI G+  +    D +KL   M+
Sbjct: 315 SVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMV 374

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT-ALTPLISMYCKCGDL 249
              I+PN  +   VL  CSH   ++ G Q+ +L+ K    K +    T ++ +  + G L
Sbjct: 375 KTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRL 434

Query: 250 EDACKL 255
           ++A +L
Sbjct: 435 QEAHEL 440



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 32/192 (16%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F+++   N   +NA+I GY+     ++  +   +M   G+ P + + +++   C     
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 214 LQLGKQVH--------------------------------QLVFKSPLCKDTTALTPLIS 241
           + LG+Q+H                                + VF     +D  + T LIS
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y K G++E A +LF  +  KD+V W  M+SG+AQ+ K  +A+  F+KM++ G++ D IT
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 302 FVALLLACNHAG 313
            + ++ AC   G
Sbjct: 282 LIGVISACAQLG 293



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL--F 256
           S + + L GC +L+ +   KQVH  +  + L +    L  LI    K     D   L  F
Sbjct: 47  SQIVTTLDGCKNLTQI---KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIF 103

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            ++   +   +NA+I GY    + +++   +  M+ EG+ P S TF AL  AC     V 
Sbjct: 104 NQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVG 163

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           LG Q     +   G          M+D+  + G L     +  +MP
Sbjct: 164 LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP 209


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 315/546 (57%), Gaps = 33/546 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL----------AMPEKNSVS 103
           DV  AF  F  +    +  WNT+I       ++++  + F+          + P+K++  
Sbjct: 98  DVNYAFRVFDSIENHSSFMWNTLIRACAH--DVSRKEEAFMLYRKMLERGESSPDKHTFP 155

Query: 104 W----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +     A I G+ E  Q+    ++ K      V     +I  Y   G +DLA K+FDEMP
Sbjct: 156 FVLKACAYIFGFSEGKQVH--CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 213

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            ++LV+WN+MI   V     +  L+L R M      P+  ++ SVL  C+ L SL LG  
Sbjct: 214 ERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTW 272

Query: 220 VHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
            H  + +     +  D      LI MYCKCG L  A ++F  +Q++D+ +WNAMI G+A 
Sbjct: 273 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332

Query: 277 HGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           HG+ E+A+  FD+M D  E ++P+S+TFV LL+ACNH G V+ G QYFD MV DY I   
Sbjct: 333 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 392

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC-RVHKRLDLAEFAAMNL 393
            +HY C+VDL+ RAG + EA+D++  MP KP   I+ +LL AC +    ++L+E  A N+
Sbjct: 393 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 452

Query: 394 FNL------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
                    +  N +G YV L+ +YA+  +W+DV  +R  M E+ + K PG S IE+  +
Sbjct: 453 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 512

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA--LHAVGEEVKEQLLLFHSE 505
            HEF +GD  HP+   I+++LK ++ R++  GY+PD   A  + A  +  KE  L  HSE
Sbjct: 513 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 572

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           +LAIAFGLI +P  TPIR+FKNLRVC DCH  TK IS +   EIIVRD  RFHHFKDG+C
Sbjct: 573 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 632

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 633 SCLDYW 638



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 3/176 (1%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMMIGLG-IRPNASSLS 202
           F  V+ A ++FD +   +   WN +I     + S  E+   L R M+  G   P+  +  
Sbjct: 96  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 155

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  +
Sbjct: 156 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 215

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG
Sbjct: 216 SLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLG 270



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+++FD++P+  +V                                SWN+MI   
Sbjct: 200 GCLDLARKVFDEMPERSLV--------------------------------SWNSMIDAL 227

Query: 81  VQKKNMAKARDLFLAMP---EKNSVSWSAMIS-----GYIECGQLDKAVELFK--VAPVK 130
           V+      A  LF  M    E +  +  +++S     G +  G    A  L K  V    
Sbjct: 228 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 287

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V+   ++I  Y K G + +AE++F  M  ++L +WNAMI G+  +  AE+ +     M+
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347

Query: 191 GL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYC 244
                +RPN+ +   +L+ C+H   +  G+Q   ++ +     P  +    +  LI+   
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA--- 404

Query: 245 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
           + G + +A  + + +  K D V W +++    + G
Sbjct: 405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG 439


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 332/565 (58%), Gaps = 31/565 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G L++ + +FDK+    V  +N++++    + N  + ++ F   + L I+   S      
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES------ 203

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK----------VAP 128
                     AR LF  + +++ +SW++MISGY+  G  +K ++LF+          +A 
Sbjct: 204 ----------ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLAT 253

Query: 129 VKSV--VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
           + SV       ++  Y K G ++ A ++F+ M  +++V+W +MIAGY     ++  ++L 
Sbjct: 254 MVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 313

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M    + PN+ +++ +L  C+ L++L+ G+++H  + ++    D      L+ MY KC
Sbjct: 314 HEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKC 373

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L  A  LF  I  KD+V+W  MI+GY  HG G +A+  F++M++ G++PD ++F+++L
Sbjct: 374 GALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISIL 433

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H+GL+D G  +F+ M N+  I  K +HY C+VDLL RAG L +A   IK MP +P 
Sbjct: 434 YACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPD 493

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             I+G LL  CR++  + LAE  A ++F L P N  G YV LANIYA  +KW++V ++R 
Sbjct: 494 ATIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN-TGYYVLLANIYAEAEKWEEVKKLRE 552

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            +    + K PG SWIE+   VH F +GD  HP    I   LK+   RMK  G+ P + +
Sbjct: 553 RIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRY 612

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
           AL    +  KE  L  HSEK+A+AFG++ +P G  +RV KNLRVCGDCH   K++S + K
Sbjct: 613 ALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVK 672

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           R+II+RD+ RFHHFKDG+CSC  +W
Sbjct: 673 RDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 78/365 (21%)

Query: 21  GKLKDAQELFDKIPQPDV---VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L+ A EL ++ P+PD+      +++  C  L S              I+D    +++I
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYCSVLQLCADLKS--------------IQDGRRIHSII 127

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                     ++ D+     E + V  S ++  Y+ CG L +   +F     + V  W  
Sbjct: 128 ----------QSNDV-----EVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNL 172

Query: 138 MISGYMKFG------------------KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           +++GY K G                  +V+ A KLFDE+  +++++WN+MI+GYV N  +
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLS 232

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E GL L   M+ LGI  + +++ SV L                           T    L
Sbjct: 233 EKGLDLFEQMLLLGINTDLATMVSVEL---------------------------TLNNCL 265

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           + MY K G+L  A ++F  +  + VV+W +MI+GYA+ G  + ++RLF +M+ E + P+S
Sbjct: 266 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNS 325

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           IT   +L AC     ++ G +    ++ + G +        +VD+  + G L  A  L  
Sbjct: 326 ITMACILPACASLAALERGQEIHGHILRN-GFSLDRHVANALVDMYLKCGALGLARLLFD 384

Query: 360 KMPFK 364
            +P K
Sbjct: 385 MIPEK 389



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 146/331 (44%), Gaps = 41/331 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ V+W S++AG+A++ G    +  LF ++ + D+   +I ++CIL      +AA +
Sbjct: 285 MGERSVVSWTSMIAGYARE-GLSDMSVRLFHEMEKEDLFPNSITMACILPACAS-LAALE 342

Query: 61  FFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             Q +           D    N ++  +++   +  AR LF  +PEK+ VSW+ MI+GY 
Sbjct: 343 RGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 402

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             G   +A+  F       +    V++ +++      G +D     F+ M     +   +
Sbjct: 403 MHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKS 462

Query: 169 MIAGYVENSWAEDG-----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
                + +  A  G      K ++MM    I P+A+   ++L GC     ++L ++V + 
Sbjct: 463 EHYACIVDLLARAGNLSKAYKFIKMM---PIEPDATIWGALLCGCRIYHDVKLAEKVAEH 519

Query: 224 VFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----VTW-------NAM 270
           VF+  P  ++T     L ++Y +    E+  KL   I R+ +      +W       +  
Sbjct: 520 VFELEP--ENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 577

Query: 271 ISGYAQHGKGEKALRLFDK----MKDEGMKP 297
           ++G + H    K   L  K    MK+EG  P
Sbjct: 578 VTGDSSHPLANKIELLLKKTRTRMKEEGHFP 608


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 324/558 (58%), Gaps = 8/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G +   +E+FD+    ++V YN ++S  +   L  + +V   +  Q+    D  +  + I
Sbjct: 272 GDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTI 331

Query: 78  SGFVQKKNMAKARD----LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +   Q  +++  +     +F    E+     +A+I  Y++CG+ + A ++F     K+VV
Sbjct: 332 AACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVV 391

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            W ++I+G ++ G+++LA ++F EMP  NLV+WN MI   V+ S  E+ + LLR M   G
Sbjct: 392 TWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQG 451

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I+ +  ++  +   C +L +L L K ++  + K+ +  D    T L+ M+ +CGD  +A 
Sbjct: 452 IKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAM 511

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  ++++DV  W A I   A  G  + A+ LFD+M  + +K D   FVALL A +H G
Sbjct: 512 RVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGG 571

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            VD G Q F +M   +G++ +  HY CMVDLLGRAG L EA DL+K MP KP   I+G+ 
Sbjct: 572 YVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSF 631

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L+ACR HK ++ A +A   +  L P    G +V L+NIYA+  KW+DVAR+RL MKE   
Sbjct: 632 LAACRKHKNVEFANYADEKITQLAP-EKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGF 690

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+ G S IEV  ++ EF SGD  H E   I   L+E+  R+   GYVPD    L  V E
Sbjct: 691 QKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDE 750

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           + KE LL  HSEKLA+A+GLI    G PIRV KNLR+C DCH   K +S +  REI VRD
Sbjct: 751 QEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRD 810

Query: 554 TTRFHHFKDGTCSCGDYW 571
             R+H FK+G CSC D+W
Sbjct: 811 NNRYHFFKEGFCSCRDFW 828



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 164/365 (44%), Gaps = 71/365 (19%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-- 124
           +KD    N++I  +     +   R +F  M E+N VSW+++I+GY       +AV LF  
Sbjct: 154 VKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFE 213

Query: 125 ------KVAPVKSVVAWT-------------------------------AMISGYMKFGK 147
                 +  PV  V A +                               A++  YMK G 
Sbjct: 214 MVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGD 273

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +    ++FDE   KNLV +N +++ YV++  A + L +L  M+  G RP+  ++ S +  
Sbjct: 274 MYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAA 333

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ L  L +GK  H  VF++ L +       +I MY KCG  E ACK+F  +  K VVTW
Sbjct: 334 CAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTW 393

Query: 268 NAMISGYAQHGKGEKALRLFD-------------------------------KMKDEGMK 296
           N++I+G  + G+ E ALR+F                                +M+++G+K
Sbjct: 394 NSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            D +T V +  AC + G +DL  ++  + +    I       T +VD+  R G  + A+ 
Sbjct: 454 GDRVTMVGIASACGYLGALDLA-KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMR 512

Query: 357 LIKKM 361
           + + M
Sbjct: 513 VFENM 517



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 153/302 (50%), Gaps = 14/302 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAM-------PEKNS----VSWSAMISGYIECGQLDKAVE 122
           NT+I G+       +A  ++L M       P+  +    +S  + I  + E  Q+   V 
Sbjct: 90  NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVV- 148

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
             K+  VK +    ++I  Y   GKVDL  K+FDEM  +N+V+W ++I GY   + A++ 
Sbjct: 149 -VKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           + L   M+ +G+ PN  ++   +  C+ L  L+LGK+V  L+ +  +  +T  +  L+ M
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDM 267

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCGD+    ++F E   K++V +N ++S Y QHG   + L + D+M  +G +PD +T 
Sbjct: 268 YMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTM 327

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++ + AC   G + +G +   + V   G+    +    ++D+  + GK   A  +   M 
Sbjct: 328 LSTIAACAQLGDLSVG-KSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMS 386

Query: 363 FK 364
            K
Sbjct: 387 NK 388



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           DE    +L T N +I GY  +   ++ + + L M+I +GI P+  +   +L  CS + + 
Sbjct: 79  DEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAF 138

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             G QVH +V K  L KD      LI  Y  CG ++   K+F E+  ++VV+W ++I+GY
Sbjct: 139 SEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGY 198

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           +     ++A+ LF +M + G++P+ +T V  + AC     ++LG +  + M  + G+ + 
Sbjct: 199 SVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMT-ELGVKSN 257

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
                 ++D+  + G +    ++  +   K    ++ T++S
Sbjct: 258 TLVVNALLDMYMKCGDMYAVREIFDEFSDK-NLVMYNTIMS 297


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 329/566 (58%), Gaps = 28/566 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           W +++ G+A Q G L ++   + ++ +  V   +   S  L  +       D       K
Sbjct: 110 WTAMIRGYALQ-GLLSESTNFYTRMRRDGVGPVSFTFSA-LFKACGAALNMDLG-----K 162

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
              +   +I GF        A DL++          ++MI  Y++CG L  A ++F    
Sbjct: 163 QVHAQTILIGGF--------ASDLYVG---------NSMIDLYVKCGFLGCARKVFDEMS 205

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + VV+WT +I  Y K+G ++ A  LFD++P K++V W AM+ GY +N   ++ L+  + 
Sbjct: 206 ERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQK 265

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKC 246
           M  +G+  +  +L+ V+  C+ L +++    +  +  +S        +  + LI MY KC
Sbjct: 266 MQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKC 325

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G  ++A K+F  ++ ++V ++++MI GYA HG+   AL+LF  M    ++P+ +TF+ +L
Sbjct: 326 GSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGIL 385

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+HAGLV+ G Q F  M   +G+A  PDHY CMVDLLGRAG L EA+DL+K MP +P 
Sbjct: 386 SACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPN 445

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++G LL ACR+H   D+A+ AA  LF L P N  G Y+ L+NIYA+  +W++V+++R 
Sbjct: 446 GGVWGALLGACRIHGNPDIAQIAANELFKLEP-NGIGNYILLSNIYASAGRWEEVSKLRK 504

Query: 427 SMKENNVVKMPGYSWIE-VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            ++E    K PG SW E     +H+F +GD  HP    I + LK+L +R++  GY P+L 
Sbjct: 505 VIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLG 564

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
            A + + ++ KE++L+ HSEKLA+A+GL+    G  I++ KN+R+C DCH      S I 
Sbjct: 565 SAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEIT 624

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            REIIVRD  RFHHF +GTCSCG++W
Sbjct: 625 GREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 130/317 (41%), Gaps = 51/317 (16%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F ++   N   W AMI GY       +       M   G+ P + + S++   C    +
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 214 LQLGKQVH--------------------------------QLVFKSPLCKDTTALTPLIS 241
           + LGKQVH                                + VF     +D  + T LI 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y K GD+E A  LF ++  KD+V W AM++GYAQ+G+ ++AL  F KM+D GM+ D +T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 302 FVALLLACNHAGLVDLGIQYFD-SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
              ++ AC   G V       D +  + +G +      + ++D+  + G   EA  + + 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 361 MP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP-----------ANAAGCY 405
           M     F     I G  +   R H  L L  F  M    + P            + AG  
Sbjct: 338 MKERNVFSYSSMILGYAMHG-RAHSALQL--FHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 406 VQLANIYAAMKKWDDVA 422
            Q   ++A M+K+  VA
Sbjct: 395 EQGRQLFAKMEKFFGVA 411



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL--FLE 258
           L S+L  C+  S +   KQVH  + ++ L + +  LT LI M  K      +  L  F +
Sbjct: 45  LMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQ 101

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +   +   W AMI GYA  G   ++   + +M+ +G+ P S TF AL  AC  A  +DLG
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            Q     +   G A+       M+DL  + G L  A  +  +M
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM 204


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/495 (42%), Positives = 297/495 (60%), Gaps = 11/495 (2%)

Query: 87  AKARDLFLAMPEKNSVSWS----------AMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
            K +DL L M     V  S          A++  Y ECG +D A  LF+   ++S+ +WT
Sbjct: 172 GKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWT 231

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           ++ISG ++ G+VD A  LFD MP ++ + W AMI GYV+     D L+  R M    +R 
Sbjct: 232 SVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRA 291

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  ++ SV+  C+ L +L+ G+     + +  +  D      LI MY KCG +E A  +F
Sbjct: 292 DEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVF 351

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            ++  +D  TW A+I G A +G+GE+A+ +F +M      PD +TFV +L AC HAGLVD
Sbjct: 352 KDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVD 411

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G ++F SM   Y I+    HY C++D+LGRAGKL EA+D I KMP KP   I+GTLL++
Sbjct: 412 KGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLAS 471

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CRV+   ++ E AA  L  L+P N+   Y+ L+N+YA   +W DV RIR  + E  + K 
Sbjct: 472 CRVYGNSEIGELAAERLLELDPDNSTA-YILLSNMYAKSNRWKDVRRIRQIIMEKGIKKE 530

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S IE+  ++HEF + DR HP    I+ KL+ +   ++ AGYVPD+   L  V EE K
Sbjct: 531 PGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEK 590

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           +++L +HSEKLA+ F L+       IR+ KNLR+C DCH A K IS +  RE+IVRD TR
Sbjct: 591 QKVLYWHSEKLAVTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTR 650

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF+ G+CSC DYW
Sbjct: 651 FHHFRHGSCSCKDYW 665



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 149/356 (41%), Gaps = 76/356 (21%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQ---ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           T V + SVL+   K +  L   Q    + +    PD    N ++  +     D+ AA+  
Sbjct: 160 TAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVD-MYAECGDMDAAWVL 218

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F+ + ++  ASW ++ISG V+   + +ARDLF  MPE+++++W+AMI GY++ G+   A+
Sbjct: 219 FEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDAL 278

Query: 122 ELFKVAPVKSVVA----------------------W-----------------TAMISGY 142
           E F+   +  V A                      W                  A+I  Y
Sbjct: 279 ETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMY 338

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G ++ A  +F +M  ++  TW A+I G   N   E+ + +   M+     P+  +  
Sbjct: 339 SKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFV 398

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+H   +  G++     F S    +   ++P                        
Sbjct: 399 GVLTACTHAGLVDKGRE----FFLS--MTEAYNISP------------------------ 428

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            VV +  +I    + GK ++AL   DKM    MKP+S  +  LL +C   G  ++G
Sbjct: 429 TVVHYGCLIDVLGRAGKLKEALDTIDKMP---MKPNSTIWGTLLASCRVYGNSEIG 481



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 32/229 (13%)

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V WNA+I+G+  +   E        M+       A +  SVL  C     L LG QVH+ 
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ----------------------- 260
           V +S +  D      L+ MY +CGD++ A  LF  +Q                       
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 261 --------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
                    +D + W AMI GY Q G+   AL  F  M+   ++ D  T V+++ AC   
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G ++ G ++    +   GI         ++D+  + G +  A+D+ K M
Sbjct: 307 GALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM 354



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 120/279 (43%), Gaps = 19/279 (6%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL----- 205
           A  L D +P +     ++ ++G+     AE+ +     M+  G RP+A +  S+L     
Sbjct: 8   ARSLLDGIPHRRGRAASSSVSGH----GAEEAVAGYVRMLAGGARPDAYTFPSLLKAAAA 63

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF----LEIQR 261
              + +++  +G  +H  V K  +  +  A + LI MY   GD   A  +     L    
Sbjct: 64  ARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGG 123

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
              V WNA+ISG+ + G+ E +   F  M        ++T+V++L AC     + LG+Q 
Sbjct: 124 GAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQV 183

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
              ++ + G+         +VD+    G +  A  L + M  +   A + +++S      
Sbjct: 184 HKRVL-ESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSM-ASWTSVISGLVRSG 241

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           ++D A     +LF+  P      +  + + Y  + ++ D
Sbjct: 242 QVDRAR----DLFDHMPERDTIAWTAMIDGYVQVGRFRD 276


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/522 (40%), Positives = 319/522 (61%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGY 111
           +   F   P K + +W+++IS F Q +    A   F  M      P+ +    +    G+
Sbjct: 79  SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF 138

Query: 112 IECGQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           +    + K+V     K      V   ++++  Y K G++  A  LFDEMP +N+V+W+ M
Sbjct: 139 LRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGM 198

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY +     + L L +  +   +  N  + SSV+  CS  + L+LGK +H L  K   
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSF 258

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +   + LIS+Y KCG +E A ++F EI  +++  WN+M+   AQH   ++   LF++
Sbjct: 259 DSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEE 318

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M + GMKP+ I+F+++L AC+HAGLV+ G +YF S++ DYGI  + +HY  +VDLLGRAG
Sbjct: 319 MGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAG 377

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           KL EAV +IK+MP +P  +++G LL+ CR+HK  ++A F A  +  ++ ++++G +V L+
Sbjct: 378 KLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMD-SSSSGLHVLLS 436

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N YAA  ++++ AR+R  +++  V K  G SW+E G  VH F +GDR H + V I+EKL+
Sbjct: 437 NAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLE 496

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           ELE+ M+ AGYV D  F L AV  E K + + +HSE+LAIAFGLI  P G PIRV KNLR
Sbjct: 497 ELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLR 556

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A K++S    R +IVRD  RFH F+DG CSCGDYW
Sbjct: 557 VCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 58/339 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQ----ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           K++  W+SV++ FA+    L   Q     L D +   D +  +   +C  L   DV  + 
Sbjct: 89  KSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS- 147

Query: 60  DFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
                L +K     D    ++++  + +   +  AR LF  MPE+N VSWS MI GY   
Sbjct: 148 --VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGY--- 202

Query: 115 GQLDKAVE---LFKVAPVKSV--------------------------------------- 132
            QLD  VE   LFK A ++ V                                       
Sbjct: 203 AQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSS 262

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              +A+IS Y K G ++ A ++FDE+PT+NL  WN+M+    +++  +    L   M  +
Sbjct: 263 FVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNV 322

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G++PN  S  SVL  CSH   ++ G++   L+    +  +T     L+ +  + G L++A
Sbjct: 323 GMKPNFISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEA 382

Query: 253 CKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
             +  ++  R     W A+++G   H   E A  + D++
Sbjct: 383 VSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRI 421



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N   + ++LL  +   SL+ G Q+H  + K  L         LI++Y K      + ++F
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E  +K   TW+++IS +AQ+     AL+ F +M ++G++PD   + +   AC      D
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 317 LGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMP 362
           +G          + +A K  +Y      + +VD+  + G++ +A  L  +MP
Sbjct: 144 VGKSV-------HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/534 (39%), Positives = 311/534 (58%), Gaps = 14/534 (2%)

Query: 51  NSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSV 102
            S+  +A+ D     F ++P  D   +NTM  G+ +  +  +A      +  +    +  
Sbjct: 77  TSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDY 136

Query: 103 SWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           ++S+++        L++  +L     K+    ++     +I+ Y     VD A ++FD++
Sbjct: 137 TFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKI 196

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
               +V +NA+I     NS   + L L R +   G++P   ++   L  C+ L +L LG+
Sbjct: 197 GEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGR 256

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
            +H+ V K+   +     T LI MY KCG L+DA  +F ++ R+D   W+AMI  YA HG
Sbjct: 257 WIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHG 316

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
            G +A+ +  +MK   ++PD ITF+ +L AC+H GLV+ G +YF SM ++YGI     HY
Sbjct: 317 HGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHY 376

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            CM+DLLGRAG+L EA   I ++P KP P ++ TLLS+C  H  +++A+     +F L+ 
Sbjct: 377 GCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDD 436

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
           ++  G YV L+N+ A   +WDDV  +R  M +   +K+PG S IEV  VVHEF SGD VH
Sbjct: 437 SH-GGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVH 495

Query: 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVP 517
                +H  L EL K +KLAGYVPD     +A + +E KE +L +HSEKLAI +GL+  P
Sbjct: 496 STSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTP 555

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            GT IRV KNLRVC DCH A K+IS I  R+II+RD  RFHHFKDG CSCGDYW
Sbjct: 556 PGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 315/546 (57%), Gaps = 33/546 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL----------AMPEKNSVS 103
           DV  AF  F  +    +  WNT+I       ++++  + F+          + P+K++  
Sbjct: 89  DVNYAFRVFDSIENHSSFMWNTLIRACAH--DVSRKEEAFMLYRKMLERGESSPDKHTFP 146

Query: 104 W----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +     A I G+ E  Q+    ++ K      V     +I  Y   G +DLA K+FDEMP
Sbjct: 147 FVLKACAYIFGFSEGKQVH--CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 204

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            ++LV+WN+MI   V     +  L+L R M      P+  ++ SVL  C+ L SL LG  
Sbjct: 205 ERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTW 263

Query: 220 VHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
            H  + +     +  D      LI MYCKCG L  A ++F  +Q++D+ +WNAMI G+A 
Sbjct: 264 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 323

Query: 277 HGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           HG+ E+A+  FD+M D  E ++P+S+TFV LL+ACNH G V+ G QYFD MV DY I   
Sbjct: 324 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 383

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC-RVHKRLDLAEFAAMNL 393
            +HY C+VDL+ RAG + EA+D++  MP KP   I+ +LL AC +    ++L+E  A N+
Sbjct: 384 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 443

Query: 394 FNL------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
                    +  N +G YV L+ +YA+  +W+DV  +R  M E+ + K PG S IE+  +
Sbjct: 444 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 503

Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA--LHAVGEEVKEQLLLFHSE 505
            HEF +GD  HP+   I+++LK ++ R++  GY+PD   A  + A  +  KE  L  HSE
Sbjct: 504 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 563

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           +LAIAFGLI +P  TPIR+FKNLRVC DCH  TK IS +   EIIVRD  RFHHFKDG+C
Sbjct: 564 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 623

Query: 566 SCGDYW 571
           SC DYW
Sbjct: 624 SCLDYW 629



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 3/176 (1%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMMIGLG-IRPNASSLS 202
           F  V+ A ++FD +   +   WN +I     + S  E+   L R M+  G   P+  +  
Sbjct: 87  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 146

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  +
Sbjct: 147 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 206

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG
Sbjct: 207 SLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLG 261



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+++FD++P+  +V                                SWN+MI   
Sbjct: 191 GCLDLARKVFDEMPERSLV--------------------------------SWNSMIDAL 218

Query: 81  VQKKNMAKARDLFLAMP---EKNSVSWSAMIS-----GYIECGQLDKAVELFK--VAPVK 130
           V+      A  LF  M    E +  +  +++S     G +  G    A  L K  V    
Sbjct: 219 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 278

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            V+   ++I  Y K G + +AE++F  M  ++L +WNAMI G+  +  AE+ +     M+
Sbjct: 279 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 338

Query: 191 GL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYC 244
                +RPN+ +   +L+ C+H   +  G+Q   ++ +     P  +    +  LI+   
Sbjct: 339 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA--- 395

Query: 245 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
           + G + +A  + + +  K D V W +++    + G
Sbjct: 396 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG 430


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 327/591 (55%), Gaps = 45/591 (7%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
            G++     + D+IP   ++++     C   NS  +  A   F R+   +T  WNTMI G
Sbjct: 38  HGQMLKTGLILDEIPASKLLAF-----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRG 92

Query: 80  FVQKKNMAKA-----RDLFLAMPEK-----------NSVSWS------------------ 105
           +   K   +A       L+ ++P             +S+S S                  
Sbjct: 93  YSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSE 152

Query: 106 -----AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
                ++++ Y + G +  A  LF     +  V+W +MI GY K G++++A ++F+ MP 
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +N+++W +MI+G V     ++ L L   M   GI+ +  +L S L  C+ L  L  GK +
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWI 272

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  + K  +  D      LI MY KCGDLE+A ++F +++ K V  W AMISGYA HG+G
Sbjct: 273 HAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRG 332

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL  F KM+  G++P+ +TF  +L AC+HAGLV      F+SM   +G     +HY C
Sbjct: 333 REALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGC 392

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDLLGRAG L EA +LI+ MP KP  AI+G LL+AC +H  L+L +     L  ++P +
Sbjct: 393 MVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGH 452

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y+ LA+I+AA  +W+  AR+R  MKE  V K+PG S I V    HEF +GD  HP+
Sbjct: 453 -GGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQ 511

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
           +  I   L+++ +R++  GY P L   L  + ++ KE  +  HSEKLA+ FGLI    G 
Sbjct: 512 IKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGM 571

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IR+ KNLRVC DCH   K IS +  REI++RD TRFH FKDG C+CGDYW
Sbjct: 572 TIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 343/603 (56%), Gaps = 55/603 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---PI--KDTASWNT 75
           G+L  A  L   +P P   +Y  +L       D  +AA    +RL   P+   D      
Sbjct: 231 GRLAQATALLQGLPAPTQRTYESLLLAAARARDTALAA-AVHRRLEADPVFRSDPFLSTR 289

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY---------IEC----GQLDKAVE 122
           +I  +     +  AR +F   P KN   W+AM+            + C    G+L   V+
Sbjct: 290 LIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVD 349

Query: 123 LFKVAP-VKSVVAWTA------------------------------MISGYMKFGKVDLA 151
            +  A  +K+ +A +A                              +I  Y K G V  A
Sbjct: 350 SYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYA 409

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCS 209
           E++F  MP +NLV+W+AMI  Y +N    D +++ + M+     + PN+ ++ SVL  C+
Sbjct: 410 ERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACA 469

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWN 268
            +++L  GK +H  + +       + L  L++MY KCG LE    +F  I +R++VV+WN
Sbjct: 470 GVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWN 529

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           ++ISGY  HG G ++L++F++M +EG+ P+ ITFV++L AC+H GLV+ G + F+SMV +
Sbjct: 530 SLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-E 588

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           Y +  + +HY CMVDLLGRAG+L EAV+LI+ M  +P P ++G+LL ACR+H  ++ AE 
Sbjct: 589 YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEM 648

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           A  +LF+L P NA G YV LA+IYA  K  + V  ++  ++E+ + K+PG SWIEV   +
Sbjct: 649 ACSHLFDLEPRNA-GNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKL 707

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           + F S D  +P++  +   + E   +MK  GYVPD    L+ + EE KE++LL HSEKLA
Sbjct: 708 YSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLA 767

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGLIK   G  IR+ KNLR+C DCH  TK+IS    REI+VRD  RFHHF++G CSC 
Sbjct: 768 VAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCR 827

Query: 569 DYW 571
           DYW
Sbjct: 828 DYW 830


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/622 (36%), Positives = 341/622 (54%), Gaps = 59/622 (9%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELF-------DKIPQPDVVSYNIMLSCI---LLN 51
           N K  V+WN++++ F+ + G + +A  L        +++   +V   N++ +C+    L 
Sbjct: 310 NNKNVVSWNTMISAFSLE-GDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLR 368

Query: 52  SDDVVAAFDF---FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           S   +  + F   FQ + +      N  I  + +   +  A  +F  + +K   SW+A+I
Sbjct: 369 SLKELHGYSFRHCFQHVELS-----NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALI 423

Query: 109 SGYIECGQLDKAVELF--------------------KVAPVKSV---------------- 132
            G+ + G   KA+ L                       A +KS+                
Sbjct: 424 GGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLE 483

Query: 133 ---VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
                 T+++S Y+  GK   A  LFD M  KNLV+WNAMI+GY +N    + L L R  
Sbjct: 484 TDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKS 543

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  GI+ +  ++ SV   CS LS+L+LGK+ H  V K+   +D      +I MY K G +
Sbjct: 544 LSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCI 603

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +++ K+F  ++ K+V +WNA+I  +  HG G++A+ L+++MK  G  PD  T++ +L+AC
Sbjct: 604 KESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMAC 663

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            HAGLV+ G++YF  M N   I  K +HY C++D+L RAG+L +A+ L+ +MP +    I
Sbjct: 664 GHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRI 723

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           + +LL +CR    L++ E  A  L  L P  A   YV L+N+YA + KWD V R+R  MK
Sbjct: 724 WSSLLRSCRTFGALEIGEKVAKKLLELEPDKAEN-YVLLSNLYAGLGKWDGVRRVRQMMK 782

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           E  + K  G SWIEVG  V+ F  GD + P+   I    + LE+R+   GY P+    LH
Sbjct: 783 EIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLH 842

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            VGEE K  +L  HSEKLAI+FGL+K   GT +R++KNLR+C DCH A K IS   +REI
Sbjct: 843 EVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREI 902

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           +VRD  RFHHF+DG CSC DYW
Sbjct: 903 VVRDNKRFHHFRDGLCSCCDYW 924



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 153/311 (49%), Gaps = 27/311 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+ +     + G L +AQ  F K    +VVS+N M+S   L   DV  AF+  Q + I+ 
Sbjct: 286 NNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEG-DVNEAFNLLQEMQIQ- 343

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--ECGQLDKAVELFKVA 127
                    G   K N     ++  A  +K  +     + GY    C Q    VEL    
Sbjct: 344 ---------GEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ---HVELS--- 388

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                    A I  Y K G ++ AEK+F  +  K + +WNA+I G+ +N      L LL 
Sbjct: 389 --------NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLF 440

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G +P+  ++SS+LL C+HL SLQ GK++H  V ++ L  D    T L+S Y  CG
Sbjct: 441 QMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCG 500

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
               A  LF  ++ K++V+WNAMISGY+Q+G   ++L LF K   EG++   I  V++  
Sbjct: 501 KASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFG 560

Query: 308 ACNHAGLVDLG 318
           AC+    + LG
Sbjct: 561 ACSQLSALRLG 571



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 18/263 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECG- 115
           F  +  K+   WN ++SG+ +         +F+ +      + ++ ++ ++I     CG 
Sbjct: 102 FDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKA---CGG 158

Query: 116 ----QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               +L + +   + K+  V  V    A++  Y K G VD A K+FD MP  NLV+WN+M
Sbjct: 159 ILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSM 218

Query: 170 IAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I  + EN ++ D   LL  M+G  G+ P+  ++ ++L  C+    + +G  +H L  K  
Sbjct: 219 ICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLG 278

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L ++      ++ MY KCG L +A   F++   K+VV+WN MIS ++  G   +A  L  
Sbjct: 279 LSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQ 338

Query: 289 KMKDEG--MKPDSITFVALLLAC 309
           +M+ +G  MK + +T + +L AC
Sbjct: 339 EMQIQGEEMKANEVTILNVLPAC 361



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 161/363 (44%), Gaps = 56/363 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSY-NIMLSC---ILLN 51
           M  K  + WN++++G+ +  G   D  ++F     D   QPD  ++ +++ +C   + + 
Sbjct: 105 METKNLIQWNALVSGYTRN-GLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVR 163

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
             +V+        L + D    N ++  + +   + +A  +F  MPE N VSW++MI  +
Sbjct: 164 LGEVIHGMVIKMGL-VLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAF 222

Query: 112 IECG-----------------QLDKAVELFKVAPV-----------------------KS 131
            E G                  L   V +  + PV                       + 
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE 282

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM-- 189
           V+   AM+  Y K G ++ A+  F +   KN+V+WN MI+ +       +   LL+ M  
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT-PLISMYCKCGD 248
            G  ++ N  ++ +VL  C     L+  K++H   F+   C     L+   I  Y KCG 
Sbjct: 343 QGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRH--CFQHVELSNAFILAYAKCGA 400

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L  A K+F  I  K V +WNA+I G+AQ+G   KAL L  +M   G +PD  T  +LLLA
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 309 CNH 311
           C H
Sbjct: 461 CAH 463



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG-LGI 194
           T +I  Y   G    +  +FD M TKNL+ WNA+++GY  N    D +K+   ++     
Sbjct: 83  TRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDF 142

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P+  +  SV+  C  +  ++LG+ +H +V K  L  D      L+ MY KCG +++A K
Sbjct: 143 QPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMK 202

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAG 313
           +F  +   ++V+WN+MI  ++++G    +  L  +M  +EG+ PD +T V +L  C   G
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            VD+G+     +    G++ +      MV +  + G L EA
Sbjct: 263 EVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRK 262
           +L  C +   ++ G+++H+ V  S   ++   L T LI MY  CG   D+  +F  ++ K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 263 DVVTWNAMISGYAQHGKGEKALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLGI-Q 320
           +++ WNA++SGY ++G     +++F D + D   +PD+ TF +++ AC   G++D+ + +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC--GGILDVRLGE 166

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
               MV   G+         +V + G+ G + EA+ +   MP
Sbjct: 167 VIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP 208


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/523 (39%), Positives = 302/523 (57%), Gaps = 41/523 (7%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------VAPVKSVVAW------ 135
           AR +F  + +KN V WSAMI GY+    +  A+ L+        + P  + +A       
Sbjct: 264 ARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACA 323

Query: 136 ---------------------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
                                       ++IS Y K G +D A    DEM  K+ V+++A
Sbjct: 324 QLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSA 383

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           +I+G V+N +AE  L + R M   GI P   ++ ++L  CSHL++LQ G   H       
Sbjct: 384 IISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRG 443

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              DT+    +I MY KCG +  + ++F  +Q +D+++WN MI GY  HG   +AL LF 
Sbjct: 444 FTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQ 503

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +++  G+KPD +T +A+L AC+H+GLV  G  +F SM  ++ I  +  HY CMVDLL RA
Sbjct: 504 ELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARA 563

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           G L EA   I++MPF P   I+G LL+ACR HK +++ E  +  +  L P    G +V +
Sbjct: 564 GNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGP-EGTGNFVLM 622

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           +NIY+++ +WDD A IR   + +   K PG SW+E+  V+H F  G + HP+  SI++KL
Sbjct: 623 SNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKL 682

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
           +EL  +MK  GY  D  F LH V EE KEQ+LL+HSEK+AIAFG++     + I V KNL
Sbjct: 683 QELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNL 742

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+C DCH A K+I+ + +REI VRD +RFHHFKDG C+C D+W
Sbjct: 743 RICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           S  A T +   ++   ++ LA  +FD++P  ++V WN MI  Y  +   +  + L   M+
Sbjct: 40  SDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHML 99

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
            LG+ P   +   +L  CS L +LQLG+ +H       L  D    T L+ MY KCG L 
Sbjct: 100 QLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLY 159

Query: 251 DACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
            A  LF  I  Q +D+V WNAMI+ ++ H    + +    +M+  G+ P+S T V++L  
Sbjct: 160 QAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPT 219

Query: 309 CNHAGLVDLG 318
              A  +  G
Sbjct: 220 IGQANALHQG 229



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 49/378 (12%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           LA +   R +++ A+ +FD+IP+P VV                                 
Sbjct: 47  LARYHISRNEIQLARHVFDQIPKPSVVL-------------------------------- 74

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           WN MI  +       ++  L+L M +      +      ++     +A++L ++    + 
Sbjct: 75  WNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAH 134

Query: 133 V--------AWTAMISGYMKFGKVDLAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDG 182
           +          TA++  Y K G +  A+ LF+ +    +++V WNAMIA +  ++     
Sbjct: 135 ILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQT 194

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           +  +  M   G+ PN+S+L S+L      ++L  GK +H    ++    +    T L+ M
Sbjct: 195 IHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDM 254

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSIT 301
           Y KC  L  A K+F  + +K+ V W+AMI GY  H     AL L+D M    G+ P   T
Sbjct: 255 YAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPAT 314

Query: 302 FVALLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
              +L AC  A L DL  G +    M+   G+         ++ +  + G +  AV  + 
Sbjct: 315 LATMLRAC--AQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLD 371

Query: 360 KMPFKPQPAIFGTLLSAC 377
           +M  K   + +  ++S C
Sbjct: 372 EMIAKDTVS-YSAIISGC 388



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 19/253 (7%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-SAMISGYIECGQ 116
           A  F   +  KDT S++ +ISG VQ     KA  +F  M       +   MI+    C  
Sbjct: 366 AVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSH 425

Query: 117 LDKAVELFKVAPVKSVVAWT-------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           L              V  +T       A+I  Y K GK+ ++ ++FD M  +++++WN M
Sbjct: 426 LAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTM 485

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY  +    + L L + +  LG++P+  +L +VL  CSH   +  GK     + ++  
Sbjct: 486 IIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFN 545

Query: 230 CKDTTA-LTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGK---GE 281
            K   A    ++ +  + G+L++A   +  IQR     +V  W A+++    H     GE
Sbjct: 546 IKPRMAHYICMVDLLARAGNLDEA---YTFIQRMPFVPNVRIWGALLAACRTHKNIEMGE 602

Query: 282 KALRLFDKMKDEG 294
           +  +    +  EG
Sbjct: 603 QVSKKIQLLGPEG 615


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 278/440 (63%), Gaps = 1/440 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VV+WT M+ G  + G VD A ++FD MP +NLV+WN+MI+GYV+     D L++   M  
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRA 223

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           LG+  N    +S L+ C+   +L  G+++++ V +S +  D    T ++ MYCKCG +++
Sbjct: 224 LGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDE 283

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F  +  + + TWN MI G+A HG+ + AL LF +M+  G+ PD +T + +L AC H
Sbjct: 284 AWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAH 343

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AG V  G +Y + +V+ +GI  K +HY CMVDL GRAG+L EA  +I +MP  P  A+ G
Sbjct: 344 AGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLG 403

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL AC++H  +DL E     + +L+P N +G YV LAN+ A   +WD+V ++R  M E 
Sbjct: 404 ALLGACKIHGDVDLGEAIGWRVIDLDPDN-SGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
           NV K  G S IEV     EFR G+  HP+   I+    ++  R++  GYVPD   ALH V
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE  LL HSEKLAIAFGL++      +R+ KNLRVC DCH ATKY+S +  REI+V
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD +RFHHFKDG CSC DYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 144/330 (43%), Gaps = 54/330 (16%)

Query: 37  DVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           DVVS+  M+   C L   DD   A + F  +P ++  SWN+MISG+V+      A ++F 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDD---AREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFD 219

Query: 95  AMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFG 146
            M     E N    ++ +      G L +  E+++      +       TA++  Y K G
Sbjct: 220 EMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCG 279

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            VD A  +FD +P + L TWN MI G+  +   +D L+L   M   G+ P+  +L +VL 
Sbjct: 280 CVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLT 339

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+H   +  G++                L  ++S +               I+ K    
Sbjct: 340 ACAHAGEVSEGRRY---------------LNHIVSRH--------------GIEPKG-EH 369

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +  M+  + + G+ ++A ++ D+M    M PD     ALL AC   G VDLG       +
Sbjct: 370 YGCMVDLFGRAGQLDEAKKVIDEMP---MDPDLAVLGALLGACKIHGDVDLG-----EAI 421

Query: 327 NDYGIAAKPDH---YTCMVDLLGRAGKLVE 353
               I   PD+   Y  + +LL  AG+  E
Sbjct: 422 GWRVIDLDPDNSGRYVLLANLLAGAGRWDE 451


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/492 (41%), Positives = 293/492 (59%), Gaps = 11/492 (2%)

Query: 90  RDLFLAMPEKNSVSWS----------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           RD+ L M     V  S          A++  Y EC  +  A ++F    V+SVV+WT+++
Sbjct: 137 RDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLL 196

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           SG  + G+VD A  LFD MP ++ V+W AMI GYV  +   + L++ R M    +  +  
Sbjct: 197 SGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEF 256

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           ++ SV+  C+ L +L++G+ V   + +  +  D      LI MY KCG +E A  +F  +
Sbjct: 257 TMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGM 316

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             +D  TW A+I G A +G  E+A+ +F +M      PD +TF+ +L AC HAGLVD G 
Sbjct: 317 HHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGR 376

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++F SM+  Y IA    HY C++DLLGRAGK+ EA+D I +MP  P   I+GTLL+ACRV
Sbjct: 377 EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRV 436

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           H   ++ E  A  L  L+P N+   Y+ L+NIYA   +W+DV R+R ++ E  + K PG 
Sbjct: 437 HGNSEIGELVAERLLELDPENSM-VYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGC 495

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           S IE+  ++HEF +GD+ HP    I+ KL+ +   +   GY PD+      V E+ K+++
Sbjct: 496 SLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKV 555

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           L +HSEKLAIAF L+     T IR+ KNLR+C DCH A K IS +  RE++VRD TRFHH
Sbjct: 556 LYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHH 615

Query: 560 FKDGTCSCGDYW 571
           F+ G CSC DYW
Sbjct: 616 FRHGFCSCKDYW 627



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 148/357 (41%), Gaps = 77/357 (21%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFD 60
           T V + SVL+   K    +    ++  ++      PD+   N ++  +     D+ +A+ 
Sbjct: 121 TPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVD-MYAECADMGSAWK 179

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  + ++   SW +++SG  +   + +ARDLF  MPE+++VSW+AMI GY+   +  +A
Sbjct: 180 VFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREA 239

Query: 121 VELFKVAPVKSVVA----------------------W-----------------TAMISG 141
           +E+F+     +V A                      W                  A+I  
Sbjct: 240 LEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM 299

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G ++ A  +F  M  ++  TW A+I G   N + E+ +++   MI +   P+  + 
Sbjct: 300 YSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTF 359

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             VL  C+H   +  G++     F S +  +   + P                       
Sbjct: 360 IGVLTACTHAGLVDKGRE----FFLSMI--EAYNIAP----------------------- 390

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            +VV +  +I    + GK  +AL   D+M    M P+S  +  LL AC   G  ++G
Sbjct: 391 -NVVHYGCIIDLLGRAGKITEALDTIDQMP---MTPNSTIWGTLLAACRVHGNSEIG 443



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 22/252 (8%)

Query: 126 VAPVKSVVAWTAMISGYMKFGK--------VDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           V    + VAW A+ISG+ + G+        VD+A       P   +   +A   G  +  
Sbjct: 81  VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRD-- 138

Query: 178 WAEDGLKLLRMMIGLGIRPN---ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
               G+++   ++G G+ P+    ++L  +   C+ + S          VF     +   
Sbjct: 139 -VLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSA-------WKVFDGMQVRSVV 190

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
           + T L+S   + G +++A  LF  +  +D V+W AMI GY    +  +AL +F +M+   
Sbjct: 191 SWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSN 250

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +  D  T V+++ AC   G +++G ++    ++  GI         ++D+  + G +  A
Sbjct: 251 VSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERA 309

Query: 355 VDLIKKMPFKPQ 366
           +D+ K M  + +
Sbjct: 310 LDVFKGMHHRDK 321


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/518 (39%), Positives = 304/518 (58%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
            + L   D  SW  +ISG+ Q    A+A   F  M  +    +++ +S+ IS       L
Sbjct: 473 LRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQAL 532

Query: 118 DKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           ++  ++   + V    + +    A++S Y + G++  A   F+++  K+ ++WN +I+G+
Sbjct: 533 NQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGF 592

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++ + ED LK+   M    +  +  +  S +   +++++++ GKQ+H ++ K     D 
Sbjct: 593 AQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDI 652

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI+ Y KCG +EDA + F E+  K+ V+WNAMI+GY+QHG G +A+ LF+KMK  
Sbjct: 653 EVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQV 712

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G  P+ +TFV +L AC+H GLV  G+ YF+SM  ++G+  KP HY C+VDL+ RAG L  
Sbjct: 713 GEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSR 772

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A   I++MP +P   I+ TLLSAC VHK +++ EFAA +L  L P ++A  YV L+N+YA
Sbjct: 773 ARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSA-TYVLLSNMYA 831

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
              KWD   + R  M+   V K PG SWIEV   VH F  GDR+HP    I+E L EL K
Sbjct: 832 VSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNK 891

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +    GY  D    L+ V +E K+  +  HSEKLAI FGL+ +    PI V KNLRVC D
Sbjct: 892 KAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKD 951

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K++S I  R IIVRD  RFHHF+ G CSC DYW
Sbjct: 952 CHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 201/439 (45%), Gaps = 58/439 (13%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMIS 109
           D+      F+ +P +   SW+ +ISGF++KK   +  DLF  M E+N     +S+++++ 
Sbjct: 60  DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR 119

Query: 110 G---------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
                     Y E             +P+ S      +I  Y K G +  A K+FD + T
Sbjct: 120 ACSGHRIGIRYAEQIHARIICHGLLCSPIIS----NPLIGLYAKNGLIISARKVFDNLCT 175

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           K+ V+W AMI+G+ +N + E+ + L   M   GI P     SSVL GC+ +    +G+Q+
Sbjct: 176 KDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQL 235

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H LVFK     +T     L+++Y +  +   A K+F ++Q KD V++N++ISG AQ G  
Sbjct: 236 HALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFS 295

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA------- 333
           + AL LF KMK + +KPD +T  +LL AC   G +  G Q   S V   GI++       
Sbjct: 296 DGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSYVIKAGISSDMIVEGA 354

Query: 334 -----------KPDH-------------YTCMVDLLGRAGKLVEAVDLIKKMPFK---PQ 366
                      K  H             +  M+   G+   L E+  + ++M  K   P 
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-PANAAGCYVQLANIYAAMKKWDDVARIR 425
              + ++L  C     LDL E     +       N   C V L ++YA   K D    I 
Sbjct: 415 QFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSV-LIDMYAKHGKLDTAHVIL 473

Query: 426 LSMKENNVVK----MPGYS 440
            ++ E++VV     + GY+
Sbjct: 474 RTLTEDDVVSWTALISGYA 492



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 187/410 (45%), Gaps = 48/410 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC--------- 47
           M  K  V++NS+++G A+Q G    A ELF K+ +    PD V+   +LS          
Sbjct: 274 MQSKDEVSFNSLISGLAQQ-GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCK 332

Query: 48  -------------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                    + +N  D+  A + F     ++   WN M+  F +
Sbjct: 333 GEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGK 392

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVA 134
             N++++  +F  M  K    N  ++ +++      G LD       ++ K     +V  
Sbjct: 393 LDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYV 452

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            + +I  Y K GK+D A  +   +   ++V+W A+I+GY +++   + LK  + M+  GI
Sbjct: 453 CSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGI 512

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +    SS +  C+ + +L  G+Q+H   + S   +D +    L+S+Y +CG +++A  
Sbjct: 513 QSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYL 572

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F +I  KD ++WN +ISG+AQ G  E AL++F +M    ++    TF + + A  +   
Sbjct: 573 EFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIAN 632

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +  G Q   +M+   G  +  +    ++    + G + +A     +MP K
Sbjct: 633 IKQGKQ-IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEK 681



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 166/359 (46%), Gaps = 45/359 (12%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L G   + G +  A+++FD                                 L  KD+ S
Sbjct: 153 LIGLYAKNGLIISARKVFDN--------------------------------LCTKDSVS 180

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL----F 124
           W  MISGF Q     +A  LF  M           +S+++SG  +    D   +L    F
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K           A+++ Y +      AEK+F +M +K+ V++N++I+G  +  +++  L+
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L   M    ++P+  +++S+L  C+   +L  G+Q+H  V K+ +  D      L+ +Y 
Sbjct: 301 LFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYV 360

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            C D++ A ++FL  Q ++VV WN M+  + +     ++ R+F +M+ +G+ P+  T+ +
Sbjct: 361 NCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPS 420

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           +L  C   G +DLG Q    ++       + + Y C  ++D+  + GKL  A  +++ +
Sbjct: 421 ILRTCTSVGALDLGEQIHTQVIK---TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 134/268 (50%), Gaps = 9/268 (3%)

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           +EC +L    ++ K+      V    ++  Y   G +D   K+F++MP +++ +W+ +I+
Sbjct: 27  VECKKLHG--KILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIIS 84

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS-HLSSLQLGKQVHQLVFKSPLC 230
           G++E   +   L L   MI   + P   S +SVL  CS H   ++  +Q+H  +    L 
Sbjct: 85  GFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLL 144

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                  PLI +Y K G +  A K+F  +  KD V+W AMISG++Q+G  E+A+ LF +M
Sbjct: 145 CSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM 204

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRA 348
              G+ P    F ++L  C    L D+G Q   ++V  YG  +  + Y C  +V L  R 
Sbjct: 205 HTAGIFPTPYVFSSVLSGCTKIKLFDVGEQ-LHALVFKYG--SSLETYVCNALVTLYSRM 261

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
              V A  +  KM  K + + F +L+S 
Sbjct: 262 PNFVSAEKVFSKMQSKDEVS-FNSLISG 288



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 155/389 (39%), Gaps = 90/389 (23%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI---------- 48
           +KT   +N    SVL     + GKL  A  +   + + DVVS+  ++S            
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEAL 501

Query: 49  -----LLN----SDDV-----VAAFDFFQRLP--------------IKDTASWNTMISGF 80
                +LN    SD++     ++A    Q L                +D +  N ++S +
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLY 561

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---------------- 124
            +   + +A   F  +  K+S+SW+ +ISG+ + G  + A+++F                
Sbjct: 562 ARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFG 621

Query: 125 -------KVAPVKS----------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
                   +A +K                 +    A+I+ Y K G ++ A + F EMP K
Sbjct: 622 SAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEK 681

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N V+WNAMI GY ++ +  + + L   M  +G  PN  +   VL  CSH+  +  G    
Sbjct: 682 NDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYF 741

Query: 222 QLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 279
           + + K   L         ++ +  + G L  A K   E+    D   W  ++S    H  
Sbjct: 742 ESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKN 801

Query: 280 ---GEKALRLFDKMKDEGMKPDSITFVAL 305
              GE A +   +++ E    DS T+V L
Sbjct: 802 VEVGEFAAQHLLELEPE----DSATYVLL 826



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 113/281 (40%), Gaps = 40/281 (14%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI  N  +   +L  C +  SL   K++H  + K     ++     L+ +Y   GDL+  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K+F ++  + V +W+ +ISG+ +     + L LF  M +E + P  I+F ++L AC+  
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGH 124

Query: 313 GLVDLGIQYFDSM---VNDYGIAAKPDHYTCMVDLLGRAGKLV----------------- 352
               +GI+Y + +   +  +G+   P     ++ L  + G ++                 
Sbjct: 125 ---RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSW 181

Query: 353 --------------EAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
                         EA+ L  +M      P P +F ++LS C   K  D+ E     +F 
Sbjct: 182 VAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFK 241

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
              +        L  +Y+ M  +    ++   M+  + V  
Sbjct: 242 YGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSF 282


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/615 (37%), Positives = 340/615 (55%), Gaps = 54/615 (8%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS--DDVVAAFDF 61
           +WNS+++ +A   G L  A +LF ++     +PD++++N +LS  LL    ++V+     
Sbjct: 300 SWNSIISSYAVN-GCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRS 358

Query: 62  FQRLPIK------------------------------------DTASWNTMISGFVQKKN 85
            Q    K                                    D     +++  +++   
Sbjct: 359 LQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDC 418

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---KVAPVKS-VVAWTAMISG 141
           + KA  +F     KN  +W+++ISGY   G  D A +L    K   +K+ +V W +++SG
Sbjct: 419 LEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSG 478

Query: 142 YMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           Y   G  + A  + + +     T N+V+W AMI+G  +N    D L+    M    ++PN
Sbjct: 479 YSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPN 538

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           ++++S++L  C+  S L+ G+++H    K     D    T LI MY K G L+ A ++F 
Sbjct: 539 STTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFR 598

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I+ K +  WN M+ GYA +G GE+   LFD M   G++PD+ITF ALL  C ++GLV  
Sbjct: 599 NIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMD 658

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G +YFDSM  DY I    +HY+CMVDLLG+AG L EA+D I  MP K   +I+G +L+AC
Sbjct: 659 GWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAAC 718

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R+HK + +AE AA NLF L P N+A  YV + NIY+  ++W DV R++ SM     VK+P
Sbjct: 719 RLHKDIKIAEIAARNLFRLEPYNSAN-YVLMMNIYSTFERWGDVERLKESMTAMG-VKIP 776

Query: 438 G-YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
             +SWI+V   +H F +  + HPE   I+  L +L   +K  GYVPD       + +  K
Sbjct: 777 NVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEK 836

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E++LL H+EKLA+ +GL+K+  GTPIRV KN R+C DCH A KYIS    REI +RD  R
Sbjct: 837 EKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGR 896

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF +G CSC D W
Sbjct: 897 FHHFMNGECSCNDRW 911



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 142/285 (49%), Gaps = 8/285 (2%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           N+   ++++S Y    +L+ A  +F      ++ +W ++IS Y   G ++ A  LF EM 
Sbjct: 266 NTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREME 325

Query: 160 TK----NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           +     +++TWN++++G++     E+ L  +R +   G +P++ S++S L     L    
Sbjct: 326 SSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFN 385

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           LGK++H  + +S L  D    T L+ MY K   LE A  +F   + K++  WN++ISGY 
Sbjct: 386 LGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYT 445

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
             G  + A +L  +MK+EG+K D +T+ +L+   + +G  +  +   +  +   G+    
Sbjct: 446 YKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINR-IKSLGLTPNV 504

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
             +T M+    +     +A+    +M     KP      TLL AC
Sbjct: 505 VSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+I+ Y K   +D A ++FDE P +    WN ++   + +   ED L+L R M     + 
Sbjct: 171 ALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKA 230

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
              ++  +L  C  L +L  GKQ+H  V +     +T+    ++SMY +   LE A  +F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVF 290

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
              +  ++ +WN++IS YA +G    A  LF +M+   +KPD IT+ +LL
Sbjct: 291 DSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLL 340



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 6/218 (2%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL---G 193
           +M+  Y++FG  + A K+F     +N + WN+ +  +   S+  D  ++L +   L   G
Sbjct: 69  SMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFA--SFGGDSHEILEVFKELHDKG 126

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           ++ ++ +L+ VL  C  L  L LG +VH  + K     D      LI++Y KC  ++ A 
Sbjct: 127 VKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRAN 186

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F E   ++   WN ++    +  + E AL L  +M+    K    T V LL AC    
Sbjct: 187 QVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLR 246

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            ++ G Q    ++  +G  +       +V +  R  +L
Sbjct: 247 ALNEGKQIHGYVIR-FGRVSNTSICNSIVSMYSRNNRL 283


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 325/591 (54%), Gaps = 45/591 (7%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
            G++     + D+IP   ++++     C   NS  +  A   F R+   +T  WNTMI G
Sbjct: 38  HGQMLKTGLILDEIPASKLLAF-----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRG 92

Query: 80  FVQKKNMAKARDLFL-------------------------AMPEKNSV------------ 102
           +   K   +A  L+                          A+ E   +            
Sbjct: 93  YSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSE 152

Query: 103 --SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
             + +++++ Y + G +  A  LF     +  V+W +MI GY K G++++A ++F+ MP 
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +N+++W +MI+G V     ++ L L   M   GI+ +  +L S L  C+ L  L  GK +
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWI 272

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  + K  +  D      LI MY KCGDLE+A ++F +++ K V  W AMISGYA HG+G
Sbjct: 273 HAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRG 332

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +AL  F KM+  G++P+ +TF  +L AC+HAGLV      F+SM   +G     +HY C
Sbjct: 333 REALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGC 392

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDLLGRAG L EA +LI+ MP KP  AI+G LL+AC +H  L+L +     L  ++P +
Sbjct: 393 MVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGH 452

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
             G Y+ LA+I+AA  +W+  AR+R  MKE  V K+PG S I V    HEF +GD  HP+
Sbjct: 453 -GGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQ 511

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
           +  I   L+++ +R++  GY P L   L  + ++ KE  +  HSEKLA+ FGLI    G 
Sbjct: 512 IKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGM 571

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IR+ KNLRVC DCH   K IS +  REI++RD TRFH FKDG C+CGDYW
Sbjct: 572 TIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/550 (38%), Positives = 321/550 (58%), Gaps = 19/550 (3%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + D+V  N +L+ +     D+V A   F  +  +D  +W  +I+G+ Q     + +D  L
Sbjct: 47  RDDLVMQNTLLN-LYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHD---RPQDALL 102

Query: 95  AMPE-------KNSVSWSAMISGYIECGQLD--KAVEL----FKVAPVKSVVAWTAMISG 141
            +PE        N  + ++++      G  D  +  +L     +     +V    A++  
Sbjct: 103 LLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDM 162

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y +   ++ A+ +FD M +KN V+WNA+IAGY      +    L   M+   ++P   + 
Sbjct: 163 YARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTY 222

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SSVL  C+ + SL+ GK VH L+ K            L+ MY K G +EDA K+F  + +
Sbjct: 223 SSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAK 282

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+WN+M++GY+QHG G+ AL+ F++M    + P+ ITF+ +L AC+HAGL+D G  Y
Sbjct: 283 RDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHY 342

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           FD M+  Y +  +  HY  MVDLLGRAG L  A+  I +MP KP  A++G LL ACR+HK
Sbjct: 343 FD-MMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHK 401

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            ++L  +AA  +F L+ ++  G +V L NIYA   +W+D A++R  MKE+ V K P  SW
Sbjct: 402 NMELGGYAAECIFELD-SHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSW 460

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 501
           +E+   VH F + D  HP+   IH   +++  ++K  GYVPD    L  + ++ +E  L 
Sbjct: 461 VEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQ 520

Query: 502 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
           +HSEKLA+AF L+  P G+ IR+ KN+R+CGDCH A K++S + +REIIVRDT RFHHF 
Sbjct: 521 YHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFC 580

Query: 562 DGTCSCGDYW 571
           DG CSC DYW
Sbjct: 581 DGACSCEDYW 590



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L  C+HL+ L  GK +H L+  S    D      L+++Y KCGDL  A KLF E+  +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD-LGIQY 321
           DVVTW A+I+GY+QH + + AL L  +M   G+KP+  T  +LL A +  G  D L  + 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              +   YG  +       ++D+  R   L EA
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEA 172



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 41/268 (15%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L++AQ +FD           +M+S                     K+  SWN +I+G+ +
Sbjct: 169 LEEAQLIFD-----------VMVS---------------------KNEVSWNALIAGYAR 196

Query: 83  KKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKA--VELFKVAPVKSVVAWT 136
           K    KA  LF  M  +N      ++S+++      G L++   V    +   + +VA+ 
Sbjct: 197 KGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFV 256

Query: 137 A--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
              ++  Y K G ++ A+K+FD +  +++V+WN+M+ GY ++   +  L+    M+   I
Sbjct: 257 GNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRI 316

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +   VL  CSH   L  G+    ++ K  +    +    ++ +  + G L+ A +
Sbjct: 317 APNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQ 376

Query: 255 LFLEIQRK-DVVTWNAMISGYAQHGKGE 281
              E+  K     W A++     H   E
Sbjct: 377 FISEMPIKPTAAVWGALLGACRMHKNME 404



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 121/274 (44%), Gaps = 28/274 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAA 58
           M  K  V+WN+++AG+A+ +G+   A  LF  + + +V   +   S +L    S   +  
Sbjct: 179 MVSKNEVSWNALIAGYAR-KGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQ 237

Query: 59  FDFFQRLPIKDTASW---------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
             +   L IK    W         NT++  + +  ++  A+ +F  + +++ VSW++M++
Sbjct: 238 GKWVHALMIK----WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLT 293

Query: 110 GYIECG----QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           GY + G     L +  E+ +     + + +  +++     G +D     FD M   N+  
Sbjct: 294 GYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNV-- 351

Query: 166 WNAMIAGYVEN----SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
               I+ YV        A    + ++ +  + I+P A+   ++L  C    +++LG    
Sbjct: 352 -EPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAA 410

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           + +F+       T +  L ++Y   G   DA K+
Sbjct: 411 ECIFELDSHYPGTHVL-LYNIYALAGRWNDAAKV 443



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 28/205 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N++L  +AK  G ++DA+++FD++ + DVVS+N ML+    +    VA   F + L  + 
Sbjct: 258 NTLLDMYAKS-GSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRI 316

Query: 69  --DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI-------ECGQLDK 119
             +  ++  +++       + + R  F  M + N       IS Y+         G LD+
Sbjct: 317 APNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNV---EPQISHYVTMVDLLGRAGHLDR 373

Query: 120 AVELFKVAPVKSVVA-WTAMISGYMKFGKVDL----AEKLFD---EMPTKNLVTWNAM-I 170
           A++     P+K   A W A++        ++L    AE +F+     P  +++ +N   +
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIR 195
           AG     W  D  K+ +MM   G++
Sbjct: 434 AG----RW-NDAAKVRKMMKESGVK 453


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/543 (38%), Positives = 320/543 (58%), Gaps = 26/543 (4%)

Query: 41  YNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           +N+ +S +L++       +  A   F+RL   D  SW  MI+G+ Q     +A +LF  M
Sbjct: 471 FNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEM 530

Query: 97  PEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKV 148
            ++    +++ +++ IS       LD+  ++   + +      +    A++S Y + GKV
Sbjct: 531 QDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKV 590

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A   FD++  K+ V+WN++++G+ ++ + E+ L +   M   G+  N+ +  S +   
Sbjct: 591 REAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAA 650

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           ++++++++GKQ+H ++ K+    +T     LI++Y KCG ++D             ++WN
Sbjct: 651 ANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWN 697

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           +MI+GY+QHG G +AL+LF+ MK   + P+ +TFV +L AC+H GLVD GI YF SM   
Sbjct: 698 SMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEA 757

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
           + +  KP+HY C+VDLLGR+G L  A   +++MP +P   ++ TLLSAC VHK +D+ EF
Sbjct: 758 HNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEF 817

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
           AA +L  L P ++A  YV ++N+YA   KWD   R R  MK+  V K PG SW+EV   V
Sbjct: 818 AASHLLELEPKDSA-TYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSV 876

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           H F +GD+ HP    I+E L+ L+ R    GYVP     L       K+   + HSE+LA
Sbjct: 877 HAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLA 936

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           IAFGL+ +   TP+ VFKNLRVC DCH   K++S I  R IIVRD+ RFHHFK G+CSC 
Sbjct: 937 IAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCK 996

Query: 569 DYW 571
           DYW
Sbjct: 997 DYW 999



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 184/421 (43%), Gaps = 51/421 (12%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+  A + F  +PI+  + WN + + F+ ++ M +   LF  M  KN V +   I   + 
Sbjct: 112 DLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKN-VEFDERIFAVVL 170

Query: 114 CGQLDKAVELFKVAPV----------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
            G    AV    V  +           S      +I  Y K G +  A+K+F+ +  ++ 
Sbjct: 171 RGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDS 230

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W AMI+G  +N + E+ + L   +              VL  C+ +   + GKQ+H L
Sbjct: 231 VSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGL 276

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K     +T     L+++Y + G+L  A ++F  + ++D V++N++ISG AQ G   +A
Sbjct: 277 VLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-----SMVNDYGIAAK-PDH 337
           L LF KM  +  KPD +T  +LL AC   G +  G Q+        M +D  +     D 
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDL 396

Query: 338 YTCMVDL---------LGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDL 385
           Y    D+          G+   L ++  +  +M  +   P    + ++L  C      DL
Sbjct: 397 YVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 386 AEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVK----MPGY 439
            E     +  L        YV   L ++YA   K D   +I   +KEN+VV     + GY
Sbjct: 457 GEQIHTQV--LKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGY 514

Query: 440 S 440
           +
Sbjct: 515 T 515



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 218/475 (45%), Gaps = 68/475 (14%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS---------------C-ILLNSDDVVAAFDFF 62
           + G L  A+++F+ +   D VS+  M+S               C I+L++   V  F+F 
Sbjct: 211 KNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFG 270

Query: 63  QRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           ++L           +T   N +++ + +  N++ A  +F  M +++ VS++++ISG  + 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQ 330

Query: 115 GQLDKAVELFK-------------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           G +++A+ LFK             VA + S  A    +    +F    +   +     T 
Sbjct: 331 GYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGM-----TS 385

Query: 162 NLVTWNAMIAGYVENSWAEDG----------------LKLLRMMIGLGIRPNASSLSSVL 205
           ++V   +++  YV+ S  +                   ++   M   GI PN  +  S+L
Sbjct: 386 DIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSIL 445

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+ L +  LG+Q+H  V K+    +    + LI MY K G L+ A K+F  ++  DVV
Sbjct: 446 KTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVV 505

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDS 324
           +W AMI+GY QH K  +AL LF +M+D+G+K D+I F + + AC     +D G Q +  S
Sbjct: 506 SWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQS 565

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
            ++ Y       +   +V L  R GK+ EA     ++  K   + + +L+S        +
Sbjct: 566 CLSGYSDDLSIGN--ALVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFE 622

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
                A+N+F     N AG  +      +A+    ++A +R+  + + +++  GY
Sbjct: 623 ----EALNIF--AQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGY 671



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 30/265 (11%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y+ FG ++ A  +FDEMP ++L  WN +   ++          L R M+   +  +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 198 ASSLSSVLLGCS-HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
               + VL GCS +  S +  +Q+H     S     T    PLI +Y K G L  A K+F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK---------------------DEGM 295
             ++ +D V+W AMISG +Q+G  E+A+ LF ++                       +G 
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
             ++    AL+   + +G +    Q F  M     ++     Y  ++  L + G +  A+
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQQGYINRAL 337

Query: 356 DLIKKMPF---KPQPAIFGTLLSAC 377
            L KKM     KP      +LLSAC
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSAC 362



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 141/375 (37%), Gaps = 98/375 (26%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--------------------- 45
           V+W +++AG+  Q  K  +A  LF ++    + S NI                       
Sbjct: 505 VSWTAMIAGYT-QHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHA 563

Query: 46  -SCILLNSDD----------------VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
            SC+   SDD                V  A+  F ++  KD  SWN+++SGF Q     +
Sbjct: 564 QSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEE 623

Query: 89  ARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMIS 140
           A ++F  M     E NS ++ + +S       +    ++     K           A+I+
Sbjct: 624 ALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALIT 683

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y K G +D              ++WN+MI GY ++    + LKL   M  L + PN  +
Sbjct: 684 LYAKCGTID-------------DISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVT 730

Query: 201 LSSVLLGCSHLSSLQLG-------KQVHQLVFKS-------------------------- 227
              VL  CSH+  +  G        + H LV K                           
Sbjct: 731 FVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEM 790

Query: 228 PLCKDTTALTPLISMYC---KCGDL-EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           P+  D      L+S  C   K  D+ E A    LE++ KD  T+  + + YA  GK +  
Sbjct: 791 PIQPDAMVWRTLLSA-CNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCR 849

Query: 284 LRLFDKMKDEGMKPD 298
            R    MKD G+K +
Sbjct: 850 DRTRQMMKDRGVKKE 864


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/522 (40%), Positives = 318/522 (60%), Gaps = 10/522 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGY 111
           +   F   P K + +W+++IS F Q +    A   F  M      P+ +    +    G+
Sbjct: 79  SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF 138

Query: 112 IECGQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           +    + K+V     K      V   ++++  Y K G++  A  LFDEMP +N+V+W+ M
Sbjct: 139 LRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGM 198

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GY +     + L L +  +   +  N  + SSV+  CS  + L+LGK +H L  K   
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSF 258

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +   + LIS+Y KCG +E A ++F EI  +++  WN+M+   AQH   ++   LF++
Sbjct: 259 DSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEE 318

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M + GMKP+ I F+++L AC+HAGLV+ G +YF S++ DYGI  + +HY  +VDLLGRAG
Sbjct: 319 MGNVGMKPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAG 377

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
           KL EAV +IK+MP +P  +++G LL+ CR+HK  ++A F A  +  ++ ++++G +V L+
Sbjct: 378 KLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMD-SSSSGLHVLLS 436

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N YAA  ++++ AR+R  +++  V K  G SW+E G  VH F +GDR H + V I+EKL+
Sbjct: 437 NAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLE 496

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           ELE+ M+ AGYV D  F L AV  E K + + +HSE+LAIAFGLI  P G PIRV KNLR
Sbjct: 497 ELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLR 556

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A K++S    R +IVRD  RFH F+DG CSCGDYW
Sbjct: 557 VCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 147/339 (43%), Gaps = 58/339 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQ----ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           K++  W+SV++ FA+    L   Q     L D +   D +  +   +C  L   DV  + 
Sbjct: 89  KSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS- 147

Query: 60  DFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
                L +K     D    ++++  + +   +  AR LF  MPE+N VSWS MI GY   
Sbjct: 148 --VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGY--- 202

Query: 115 GQLDKAVE---LFKVAPVKSV--------------------------------------- 132
            QLD  VE   LFK A ++ V                                       
Sbjct: 203 AQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSS 262

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              +A+IS Y K G ++ A ++FDE+PT+NL  WN+M+    +++  +    L   M  +
Sbjct: 263 FVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNV 322

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G++PN     SVL  CSH   ++ G++   L+    +  +T     L+ +  + G L++A
Sbjct: 323 GMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEA 382

Query: 253 CKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
             +  ++  R     W A+++G   H   E A  + D++
Sbjct: 383 VSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRI 421



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N   + ++LL  +   SL+ G Q+H  + K  L         LI++Y K      + ++F
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E  +K   TW+++IS +AQ+     AL+ F +M ++G++PD   + +   AC      D
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 317 LGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMP 362
           +G          + +A K  +Y      + +VD+  + G++ +A  L  +MP
Sbjct: 144 VGKSV-------HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 277/437 (63%), Gaps = 8/437 (1%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS-- 199
           Y+ F ++D A  +F+++P      WN MI G+  +      L+L   M+  G++P+ S  
Sbjct: 521 YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGV 580

Query: 200 -----SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
                S+ SVLL C +L +L+ G+  H  V ++    D    T ++ MY KCG L+ A  
Sbjct: 581 IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 640

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF E   KD+V W+AMI+ Y  HG G KA+ LFD+M   G++P  +TF  +L AC+H+GL
Sbjct: 641 LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 700

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           ++ G  YF  M  ++ IA K  +Y CMVDLLGRAG+L EAVDLI+ MP +P  +I+G+LL
Sbjct: 701 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 760

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            ACR+H  LDLAE  A +LF+L+P + AG +V L+NIYAA  +W++V ++R  M      
Sbjct: 761 GACRIHNNLDLAEKIADHLFHLDPVH-AGYHVLLSNIYAAKSRWNEVEKVRKMMARRGAN 819

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K+ G+S +E    VH+F  GDR HP+   ++ KL+EL   MK  GYVP  +F LH + EE
Sbjct: 820 KIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEE 879

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  L +HSE+LAIAFGLI    GT +R+ KNLR+CGDCH A K IS I  R I+VRD 
Sbjct: 880 AKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDM 939

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFH F+DG CSCGDYW
Sbjct: 940 HRFHRFEDGVCSCGDYW 956



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 150/293 (51%), Gaps = 18/293 (6%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           S L     + G++ +A ++F++  +PD V +  M++    N+D   A   F Q + +   
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCF 202

Query: 69  --DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-- 124
             D    N++++ + +      A +LF  MPEK+ +SWS MI+ Y      ++A+ LF  
Sbjct: 203 DGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHE 262

Query: 125 ---KVAPVKSVVAWTAM----ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
              K     SV   +A+    +S  ++ GK     K+      K++V+W A+++GY +N 
Sbjct: 263 MIEKRFEPNSVTVVSALQACAVSRNLEEGK-----KIHKIAVWKDVVSWVALLSGYAQNG 317

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
            A   + + R M+  GI+P+A ++  +L   S L   Q    +H  V +S    +     
Sbjct: 318 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 377

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            LI +Y KCG L DA KLF  +  +DVV W++MI+ Y  HG+G +AL +FD+M
Sbjct: 378 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQM 430



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 176/417 (42%), Gaps = 102/417 (24%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF------------DFFQRLP 66
             L+ A+++FD+ P P+V  +N  L   C     ++ +  F            +F   + 
Sbjct: 50  ASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIA 109

Query: 67  IKDTASWNTM-----ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           +K  A    +     I GF  KKN     D+F+          SA++  Y +CGQ+ +A+
Sbjct: 110 LKACAGLRMLELGKVIHGFA-KKNDEIGSDMFVG---------SALVELYSKCGQMGEAL 159

Query: 122 ELFKVAPVKSVVAWTAMISGYM------------------------------------KF 145
           ++F+       V WT+M++GY                                     K 
Sbjct: 160 KVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKT 219

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G   +A  LF +MP K++++W+ MIA Y  N  A + L L   MI     PN+ ++ S L
Sbjct: 220 GCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL 279

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+   +L+ GK++H++                                      KDVV
Sbjct: 280 QACAVSRNLEEGKKIHKIAV-----------------------------------WKDVV 304

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +W A++SGYAQ+G   K++ +F  M  +G++PD++  V +L A +  G+    +     +
Sbjct: 305 SWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYV 364

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           V   G  +       +++L  + G L +AV L K M  +    I+ ++++A  +H R
Sbjct: 365 VRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGR 419



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 11/269 (4%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++FK   +      T + S Y K   +  A K+FDE P  N+  WN+ +  Y      E+
Sbjct: 26  QVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEE 85

Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPL 239
            L+L  +MI   G  P+  ++   L  C+ L  L+LGK +H    K+  +  D    + L
Sbjct: 86  TLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSAL 145

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           + +Y KCG + +A K+F E QR D V W +M++GY Q+   E+AL LF +M         
Sbjct: 146 VELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGD 205

Query: 300 ITFV-ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           +  V +LL      G   +    F  M     I+     ++ M+          EA++L 
Sbjct: 206 LPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS-----WSTMIACYANNEAANEALNLF 260

Query: 359 KKM---PFKPQPAIFGTLLSACRVHKRLD 384
            +M    F+P      + L AC V + L+
Sbjct: 261 HEMIEKRFEPNSVTVVSALQACAVSRNLE 289



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 178/429 (41%), Gaps = 90/429 (20%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  G  K A  LF K+P+ DV+S++ M++C   N++    A + F  +  K 
Sbjct: 210 NSLLNLYAKT-GCEKIAANLFSKMPEKDVISWSTMIAC-YANNEAANEALNLFHEMIEKR 267

Query: 70  TASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
               +  +   +Q     +N+ + + +      K+ VSW A++SGY + G   K++ +F+
Sbjct: 268 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFR 327

Query: 126 -----------VAPVK----------------------------SVVAWTAMISGYMKFG 146
                      VA VK                            +V    ++I  Y K G
Sbjct: 328 NMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCG 387

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG----------LGIRP 196
            +  A KLF  M  +++V W++MIA Y  +    + L++   MI           + ++P
Sbjct: 388 SLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQP 447

Query: 197 NAS---SLSSVLLGC------------SHLSSL------------QLGKQVHQLVFKSPL 229
                 +++S  L              +H   L            Q        +F   L
Sbjct: 448 QVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGL 507

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D+  LT    MY     ++ A  +F +I       WN MI G+A  G+   +L L+ K
Sbjct: 508 QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 567

Query: 290 MKDEGMKPDS-------ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           M ++G+KPD+       ++ +++LLAC + G +  G ++F S V   G        T ++
Sbjct: 568 MMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIM 626

Query: 343 DLLGRAGKL 351
           D+  + G L
Sbjct: 627 DMYSKCGSL 635



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 23/254 (9%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----------NSVSWS 105
           AA   F+ +P   +  WN MI GF        + +L+  M EK           N VS  
Sbjct: 529 AASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVS-- 586

Query: 106 AMISGYIECGQLD--KAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEM 158
            ++S  + CG L   +  E F    +++     ++  TA++  Y K G +DLA  LFDE 
Sbjct: 587 -ILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDET 645

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             K+LV W+AMIA Y  +      + L   M+  G+RP+  + + VL  CSH   L+ GK
Sbjct: 646 AGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK 705

Query: 219 QVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQ 276
              QL+ +   + +  +    ++ +  + G L +A  L   +    D   W +++     
Sbjct: 706 MYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRI 765

Query: 277 HGKGEKALRLFDKM 290
           H   + A ++ D +
Sbjct: 766 HNNLDLAEKIADHL 779



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 30/226 (13%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  VFK+ +  DT   T L S+Y KC  L+ A K+F E    +V  WN+ +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 279 KGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           + E+ LRLF  M    G  PD+ T    L AC    +++LG          +G A K D 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI-------HGFAKKNDE 134

Query: 338 Y-------TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEF 388
                   + +V+L  + G++ EA+ + ++   +P   ++ ++++  + +   +  LA F
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 389 AAMNLFN------------LNPANAAGCYVQLANIYAAMKKWDDVA 422
           + M + +            LN     GC    AN+++ M + D ++
Sbjct: 194 SQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS 239


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 335/570 (58%), Gaps = 13/570 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S   G    RG  +    + +   +PD+   N +L  + +    ++ A   F  +P KD 
Sbjct: 125 SACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLF-VHVKCGLMLDARKLFDEMPEKDM 183

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS-----GYIECGQLDKAV 121
           ASW TMI GFV   N ++A  LFL M E+     S +++ MI      G ++ G+   + 
Sbjct: 184 ASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSC 243

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            L +     + V+  A+I  Y K G ++ A  +FD+MP K  V WN++IA Y  + ++E+
Sbjct: 244 ALKRGVGDDTFVS-CALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEE 302

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L     M   G + +  ++S V+  C+ L+SL+  KQ H  + +     D  A T L+ 
Sbjct: 303 ALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVD 362

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y K G +EDA  +F  ++RK+V++WNA+I+GY  HG+GE+A+ +F++M  EGM P+ +T
Sbjct: 363 FYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVT 422

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           F+A+L AC+++GL + G + F SM  D+ +  +  HY CMV+LLGR G L EA +LI+  
Sbjct: 423 FLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSA 482

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PFKP   ++ TLL+ACR+H+ L+L + AA NL+ + P      Y+ L N+Y +  K  + 
Sbjct: 483 PFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCN-YIVLLNLYNSSGKLKEA 541

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
           A +  ++K   +  +P  +WIEV    + F  GD+ H +   I+EK+  +   +   GYV
Sbjct: 542 AGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYV 601

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
            + +  L  V EE ++++L +HSEKLAIAFGLI  P  TP+++ +  RVCGDCH A K+I
Sbjct: 602 EENKALLPDVDEE-EQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFI 660

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + +  REI+VRD +RFHHF+DG+CSCGDYW
Sbjct: 661 AMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G     S+  +++  C  L S++  K+V   +  S    D   +  ++ ++ KCG + DA
Sbjct: 112 GFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDA 171

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            KLF E+  KD+ +W  MI G+   G   +A  LF  M +E     S TF  ++ A    
Sbjct: 172 RKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGL 231

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           GLV +G Q   S     G+         ++D+  + G + +A  +  +MP K
Sbjct: 232 GLVQVGRQ-IHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEK 282



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 21/278 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLS-CILLNSDDV 55
           M  KTTV WNS++A +A   G  ++A     E+ D   + D  + +I++  C  L S + 
Sbjct: 279 MPEKTTVGWNSIIASYALH-GYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEY 337

Query: 56  V--AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     +R    D  +   ++  + +   M  A  +F  M  KN +SW+A+I+GY  
Sbjct: 338 AKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGN 397

Query: 114 CGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            GQ ++AVE+F    +   + + V + A++S     G  +   ++F  M   + V   AM
Sbjct: 398 HGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAM 457

Query: 170 IAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-- 225
               +      +GL  +   ++     +P  +  +++L  C    +L+LGK   + ++  
Sbjct: 458 HYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGM 517

Query: 226 -KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
               LC        L+++Y   G L++A  +   ++RK
Sbjct: 518 EPEKLCN----YIVLLNLYNSSGKLKEAAGVLQTLKRK 551


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/480 (43%), Positives = 294/480 (61%), Gaps = 8/480 (1%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--VA-----PVKSVVAWTAMISG 141
           A  +F  M  ++ VSW+AMISG+   G   +A+++F+  VA     P    +A      G
Sbjct: 11  AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 70

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
             +   + L + +FDEM    L++WNAM+A Y  N    + ++L   M   GI P+A +L
Sbjct: 71  KARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 130

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           ++VL  C  +S+L LGK++H+++ +  +C        L+ MY  CG L++A  +F  +  
Sbjct: 131 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGT 190

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+W ++IS Y +HG G +A+ LF+KM  +G++PDSI FVA+L AC+HAGL+D+G  Y
Sbjct: 191 RDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY 250

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           F SM +++ IA K +HY CMVDLLGRAG + EA D I  MP KP   ++G LL ACR+H 
Sbjct: 251 FYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHS 310

Query: 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441
            +D+   AA +L  L P    G YV L+NIYA   +W DV+ +R  M+   + K+PG S 
Sbjct: 311 NMDIGLLAADSLLRLAPKQ-TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSN 369

Query: 442 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 501
            E+G  VH F  GD  HP+   I++KL EL +R++  GY P++E  LH V EE KE  L 
Sbjct: 370 AELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLS 429

Query: 502 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561
            HSEKLAIAF LI    GTPIR+  NLR C DCH A K IS I  REII++D  R H+ K
Sbjct: 430 VHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 489



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 111/233 (47%), Gaps = 15/233 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSY-NIMLSCILLNSDD 54
           M  +  V+WN++++GFA   G    A ++F ++     P+PD  +  +I+ S      +D
Sbjct: 18  MQYRDVVSWNAMISGFA-HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED 76

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           +      F  +      SWN M++ +   +   +A +LF+ M     E ++V+ + ++  
Sbjct: 77  IALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 136

Query: 111 YIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             E   L     + +V   +    S++   A++  Y   G +  A  +FD M T+++V+W
Sbjct: 137 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 196

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            ++I+ Y  +    + + L   M G G+ P++ +  ++L  CSH   L +GK 
Sbjct: 197 TSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKH 249



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 34/205 (16%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSI 300
           MY +CG  +DA ++F E+Q +DVV+WNAMISG+A  G   +A+ +F ++   +  KPD+ 
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 301 TFVALLLACNHAGLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           T  ++L +   A + D+ +    FD M     I+     +  M+ +       VEAV+L 
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLIS-----WNAMLAVYTNNEMHVEAVELF 115

Query: 359 KKMP---FKPQPAIFGTLLSAC----------RVHKRLD--------LAEFAAMNLFNLN 397
            +M     +P      T+L +C          R+H+ +         L E A M+++   
Sbjct: 116 MRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMY--- 172

Query: 398 PANAAGCYVQLANIYAAMKKWDDVA 422
            AN  GC  +  +++ +M   D V+
Sbjct: 173 -AN-CGCLKEARDVFDSMGTRDVVS 195


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/467 (44%), Positives = 286/467 (61%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + ++  Y E G L     +F  A    +V  TAM++   K G +D A K+FDEMP ++ V
Sbjct: 151 TGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHV 210

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TWNAMIAGY +   + + L +  +M   G++ N  S+  VL  C+HL  L  G+ VH  V
Sbjct: 211 TWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYV 270

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            +  +    T  T L+ MY KCG+++ A ++F  ++ ++V TW++ I G A +G GE++L
Sbjct: 271 ERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESL 330

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF+ MK EG++P+ ITF+++L  C+  GLV+ G ++FDSM N YGI  + +HY  MVD+
Sbjct: 331 DLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDM 390

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG+L EA++ I  MP +P    +  LL ACR++K  +L E A   +  L   N  G 
Sbjct: 391 YGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKN-DGA 449

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+NIYA  K W+ V+ +R +MK   V K+PG S IEV   VHEF  GD+ HP    I
Sbjct: 450 YVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEI 509

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
             KL+E+ K ++L+GYV +    L  + EE KE  L  HSEK+AIAFGLI +    PIRV
Sbjct: 510 EMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRV 569

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             NLR+C DCH   K IS I  REIIVRD  RFHHFKDG CSC DYW
Sbjct: 570 VMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 135/294 (45%), Gaps = 30/294 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L     +FD   +PD+V+   ML+       D+  A   F  +P +D  +WN MI+G+
Sbjct: 161 GCLSSCHNVFDGAVEPDLVTQTAMLNACA-KCGDIDFARKMFDEMPERDHVTWNAMIAGY 219

Query: 81  VQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA------VELFKVAPVK 130
            Q     +A D+F  M  +    N VS   ++S       LD        VE +KV    
Sbjct: 220 AQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVR--M 277

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V   TA++  Y K G VD A ++F  M  +N+ TW++ I G   N + E+ L L   M 
Sbjct: 278 TVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMK 337

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMY 243
             G++PN  +  SVL GCS +  ++ G++     F S   ++   + P       ++ MY
Sbjct: 338 REGVQPNGITFISVLKGCSVVGLVEEGRK----HFDS--MRNVYGIGPQLEHYGLMVDMY 391

Query: 244 CKCGDLEDACKLFLEI-QRKDVVTWNAMISG---YAQHGKGEKALRLFDKMKDE 293
            + G L++A      +  R  V  W+A++     Y     GE A R   +++D+
Sbjct: 392 GRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDK 445



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI---GLGIRPNASSLSS 203
            +D A KL +      L T N+MI  Y ++S           ++      + P+  + + 
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-------------------- 243
           ++  C+ L +   G  VH  V K     D    T L+ MY                    
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 244 -----------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                       KCGD++ A K+F E+  +D VTWNAMI+GYAQ G+  +AL +F  M+ 
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           EG+K + ++ V +L AC H  ++D G ++  + V  Y +       T +VD+  + G + 
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296

Query: 353 EAVDLIKKM 361
            A+ +   M
Sbjct: 297 RAMQVFWGM 305



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 110/235 (46%), Gaps = 22/235 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V WN+++AG+A Q G+ ++A ++F  + Q + V  N +   ++L++   +   D
Sbjct: 204 MPERDHVTWNAMIAGYA-QCGRSREALDVF-HLMQMEGVKLNEVSMVLVLSACTHLQVLD 261

Query: 61  -------FFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  + +R  ++ T +  T ++  + +  N+ +A  +F  M E+N  +WS+ I G  
Sbjct: 262 HGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLA 321

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPT-----KNL 163
             G  +++++LF     + V    + + +++ G    G V+   K FD M         L
Sbjct: 322 MNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQL 381

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             +  M+  Y      ++ L  +  M    +RP+  + S++L  C    + +LG+
Sbjct: 382 EHYGLMVDMYGRAGRLKEALNFINSM---PMRPHVGAWSALLHACRMYKNKELGE 433


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 326/566 (57%), Gaps = 13/566 (2%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           F K    L  A  +F +I  P++  +N+++ C    ++    AF F+ ++ +K     + 
Sbjct: 60  FNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPS-KAFGFYTQM-LKSRIWPDN 117

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSW---------SAMISGYIECGQLDKAVELFKV 126
           +   F+ K +      L         V +         ++++  Y  CG +  A  +F  
Sbjct: 118 ITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQ 177

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
              + VV+WT+M++GY K G V+ A ++FDEMP +NL TW+ MI GY +N+  E  + L 
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G+  N + + SV+  C+HL +L+ G++ ++ V KS +  +    T L+ M+ +C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           GD+E A  +F  +   D ++W+++I G A HG   KA+  F +M   G  P  +TF A+L
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLV+ G++ +++M  D+GI  + +HY C+VD+LGRAGKL EA + I KM  KP 
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPN 417

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             I G LL AC+++K  ++AE     L  + P + +G YV L+NIYA   +WD +  +R 
Sbjct: 418 APILGALLGACKIYKNTEVAERVGNMLIKVKPEH-SGYYVLLSNIYACAGQWDKIESLRD 476

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            MKE  V K PG+S IE+   +++F  G D+ HPE+  I  K +E+  +++L GY  +  
Sbjct: 477 MMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTG 536

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
            A   V EE KE  +  HSEKLAIA+G++K   GT IR+ KNLRVC DCH  TK IS + 
Sbjct: 537 DAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVY 596

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            RE+IVRD  RFHHF++G CSC DYW
Sbjct: 597 GRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 41/230 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W S++AG+ K  G +++A+E+FD++P  ++ +++I                 
Sbjct: 178 MGFRDVVSWTSMVAGYCKC-GMVENAREMFDEMPHRNLFTWSI----------------- 219

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQL-- 117
                          MI+G+ +     KA DLF  M  +  V+  + M+S    C  L  
Sbjct: 220 ---------------MINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGA 264

Query: 118 ----DKAVE-LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
               ++A E + K     +++  TA++  + + G ++ A  +F+ +P  + ++W+++I G
Sbjct: 265 LEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKG 324

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
              +  A   +     MI LG  P   + ++VL  CSH   ++ G ++++
Sbjct: 325 LAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 312/520 (60%), Gaps = 11/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI-------SGYIEC 114
           F ++P KD  +W  MI G+ +  ++  A   F  M  +  V     +       SG ++ 
Sbjct: 99  FDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKD 158

Query: 115 GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIA 171
           G L K++   + K      V    A+I  Y K   V+ A ++    P   N+V+  +MI 
Sbjct: 159 GWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMID 218

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY+E    E+ L +   +   G+ PN  + SS++ GC+  + L+ G Q+H  V K+ L +
Sbjct: 219 GYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR 278

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D+   + L+ MY KCG +  + +LF EI+ +  + WNA+I+ +AQHG G +A++ FD+M 
Sbjct: 279 DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMI 338

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++P+ I FV+LL AC+HAGLVD G++YF SM   +GI  K +HY+C++D  GRAG+L
Sbjct: 339 YSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRL 398

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA   I +MP KP    + +LL ACR+    +L E AA NL  L P N  G +V L+ I
Sbjct: 399 DEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGN-TGIHVSLSGI 457

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA++ +W+DV  +R  M+++ + K+PG+SW++     H F S D  HP+   I+EKL+EL
Sbjct: 458 YASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEEL 517

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R+K  GY+PD  F    + +  KE++L +HSE++A+AF LI +P   PI V KNLR+C
Sbjct: 518 TTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRIC 577

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH A K+I  +E+R+IIVRD +RFHHF +G CSCGDYW
Sbjct: 578 IDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 617



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 165/423 (39%), Gaps = 96/423 (22%)

Query: 65  LPIKDTASWNTMISGFVQ---------------KKNMAKAR------------------- 90
           +P ++  SW T++SG  Q               +  +A  R                   
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 91  --------------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                         +LF+A         S +   Y +CG L +A  +F   P K  VAWT
Sbjct: 61  AQLHCVGVRLGFDTELFVA---------SNLADMYSKCGLLSEACRVFDQMPQKDAVAWT 111

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           AMI GY K G ++ A   F +M  + LV  +  +                          
Sbjct: 112 AMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHV-------------------------- 145

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
                 SVL     L    L K +H  V K+    +      LI MY K  D+E A ++ 
Sbjct: 146 ----FCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL 201

Query: 257 -LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
            ++    +VV+  +MI GY +    E+AL ++ +++ +G++P+  TF +++  C    L+
Sbjct: 202 KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALL 261

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           + G Q    ++    I    D +  + +VD+ G+ G +  ++ L  ++ ++   A    +
Sbjct: 262 EQGAQLHAQVIKTDLIR---DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVI 318

Query: 374 -LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
            + A   H R  +  F  M    + P + A  +V L    +     D+  +   SMKE +
Sbjct: 319 NVFAQHGHGREAIQAFDRMIYSGIRPNHIA--FVSLLTACSHAGLVDEGLKYFYSMKEAH 376

Query: 433 VVK 435
            ++
Sbjct: 377 GIE 379


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/539 (40%), Positives = 319/539 (59%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ SC L     +  A   F ++    +  +NTMI G V   ++ +A  L++ M E+  
Sbjct: 68  NLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGI 127

Query: 100 --NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             ++ ++  ++        L + V++    FK      V     +IS Y K G ++ A  
Sbjct: 128 EPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGV 187

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS 212
           +F++M  K++ +W+++I  +       + L LL  M G G  R   S L S L  C+HL 
Sbjct: 188 VFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLG 247

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           S  LG+ +H ++ ++    +    T LI MY KCG LE    +F  +  K+  ++  MI+
Sbjct: 248 SPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIA 307

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG+G +A+R+F  M +EG+ PD + +V +L AC+HAGLV+ G+Q F+ M  ++ I 
Sbjct: 308 GLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIK 367

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY CMVDL+GRAG L EA DLIK MP KP   ++ +LLSAC+VH  L++ E AA N
Sbjct: 368 PTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAEN 427

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           +F LN  N  G Y+ LAN+YA  KKW +VARIR  M E ++V+ PG+S +E    V++F 
Sbjct: 428 IFRLNKHNP-GDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFV 486

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D+  P   +I++ ++++E ++K  GY PD+   L  V E+ K Q L  HS+KLAIAF 
Sbjct: 487 SQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFA 546

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI+   G+PIR+ +NLR+C DCH  TK+IS I +REI VRD  RFHHFKDGTCSC DYW
Sbjct: 547 LIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 338/588 (57%), Gaps = 42/588 (7%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           +V  +V+WNS+LAG+  + G +++A+ ++ ++P+  +++ N M+    +    VV A   
Sbjct: 140 SVLDSVSWNSILAGYI-EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGL-VVEACKL 197

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS----------- 103
           F  +  KD  +W+ +I+ F Q +   +A   F+ M        E  +VS           
Sbjct: 198 FDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVV 257

Query: 104 ---------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 +A+I  Y +CG +  A +LF  A +  +++W +MISGY
Sbjct: 258 NMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGY 317

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           +K   VD A+ +FD MP K++V+W++MI+GY +N   ++ L L + M   G +P+ ++L 
Sbjct: 318 LKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLV 377

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           SV+  C+ L++L+ GK VH  + ++ L  +    T LI MY KCG +E A ++F  +  K
Sbjct: 378 SVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK 437

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
            + TWNA+I G A +G  E +L +F  MK   + P+ ITF+ +L AC H GLVD G  +F
Sbjct: 438 GISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 497

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
            SM++D+ I     HY CMVDLLGRAGKL EA +L+ +MP  P  A +G LL AC+ H  
Sbjct: 498 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 557

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
            ++       L  L P +  G +V L+NIYA+  KWDDV  IR  M ++ V+K+PG S I
Sbjct: 558 SEMGRRVGRKLIELQP-DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMI 616

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           E   V+HEF +GD+ HP++ +I + L E+  ++KL GY PD+   L  V EE KE  L  
Sbjct: 617 EANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFR 676

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           HSEKLAIAFGLI +   TPIR+ KNLR+C DCH A K IS    R+I+
Sbjct: 677 HSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 161/324 (49%), Gaps = 32/324 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    NT+I+ F    NM  A  +F      +SVSW+++++GYIE G +++A  ++   P
Sbjct: 112 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 171

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            +S++A  +MI  +   G V  A KLFDEM  K++VTW+A+IA + +N   E+ ++    
Sbjct: 172 ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVG 231

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M  +G+  +     S L  C++L  + +GK +H L  K            LI MY KCGD
Sbjct: 232 MHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGD 291

Query: 249 LEDACKLFLE-------------------------------IQRKDVVTWNAMISGYAQH 277
           +  A KLF E                               +  KDVV+W++MISGYAQ+
Sbjct: 292 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 351

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
              ++ L LF +M+  G KPD  T V+++ AC     ++ G ++  + +   G+      
Sbjct: 352 DLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVIL 410

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKM 361
            T ++D+  + G +  A+++   M
Sbjct: 411 GTTLIDMYMKCGCVETALEVFYGM 434



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           S +  F  +D   ++F+ +   N   WN MI  Y++ +       L + M+   +  +  
Sbjct: 20  STHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNY 79

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +   ++  CS   S    KQVH  V K     D      LI+ +  C ++ DAC++F E 
Sbjct: 80  TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 139

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
              D V+WN++++GY + G  E+A  ++ +M +  +    I   ++++     GLV    
Sbjct: 140 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI----IASNSMIVLFGMRGLVVEAC 195

Query: 320 QYFDSMV 326
           + FD M+
Sbjct: 196 KLFDEML 202


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 338/619 (54%), Gaps = 51/619 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDD 54
           M  K  V WNS++ G+  Q+G   ++ ++F ++      P P V   N++ +C       
Sbjct: 206 MPEKDVVCWNSIIGGYV-QKGLFWESIQMFLEMIGGGLRPSP-VTMANLLKACGQSGLKK 263

Query: 55  V-VAAFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           V + A  +   L +  D     +++  +    +   A  +F +M  ++ +SW+AMISGY+
Sbjct: 264 VGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYV 323

Query: 113 ECGQLDKAVELFK--------------VAPVKS-------------------------VV 133
           + G + ++  LF+              V+ ++                          +V
Sbjct: 324 QNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLV 383

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             TA++  Y K G +  A  +F  M  KN++TW AM+ G  +N +AED LKL   M    
Sbjct: 384 LSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEK 443

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  N+ +L S++  C+HL SL  G+ VH    +     D    + LI MY KCG +  A 
Sbjct: 444 VAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAE 503

Query: 254 KLFL-EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
           KLF  E   KDV+  N+MI GY  HG G  AL ++ +M +E +KP+  TFV+LL AC+H+
Sbjct: 504 KLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHS 563

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G   F SM  D+ +  +  HY C+VDL  RAG+L EA +L+K+MPF+P   +   
Sbjct: 564 GLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEA 623

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LLS CR HK  ++    A  L +L+  N+ G YV L+NIYA  +KW+ V  IR  M+   
Sbjct: 624 LLSGCRTHKNTNMGIQIADRLISLDYLNS-GIYVMLSNIYAEARKWESVNYIRGLMRMQG 682

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K+PGYS IEVG  V+ F + D  HP    I++ L+ L   ++  GY+PD    L  V 
Sbjct: 683 MKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVN 742

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           E +K +LL  HSE+LAIAFGL+  P G+ I++ KNLRVC DCH  TKYIS I +REIIVR
Sbjct: 743 EPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVR 802

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF +G CSC D+W
Sbjct: 803 DANRFHHFVNGKCSCNDFW 821



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 192/402 (47%), Gaps = 58/402 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVV--SYNIMLS---CILLNSDDV-------VA 57
           N+++AGF + +  + +   LF  +   D+   SY  M +   C  L  D+V         
Sbjct: 114 NAMIAGFLRNQQHM-EVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAV 172

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
              F   L +      ++M++  V++  +A A+ +F  MPEK+ V W+++I GY++ G  
Sbjct: 173 RRGFHLHLYVG-----SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLF 227

Query: 118 DKAVELF--------KVAPV-------------------------------KSVVAWTAM 138
            +++++F        + +PV                                 V   T++
Sbjct: 228 WESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSL 287

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y   G    A  +FD M +++L++WNAMI+GYV+N    +   L R ++  G   ++
Sbjct: 288 VDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDS 347

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +L S++ GCS  S L+ G+ +H  + +  L       T ++ MY KCG ++ A  +F  
Sbjct: 348 GTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGR 407

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           + +K+V+TW AM+ G +Q+G  E AL+LF +M++E +  +S+T V+L+  C H G +  G
Sbjct: 408 MGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKG 467

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
                  +  +G A      + ++D+  + GK+  A  L   
Sbjct: 468 RTVHAHFIR-HGYAFDAVITSALIDMYAKCGKIHSAEKLFNN 508



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 9/312 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A + F +  + +TA  N MI+GF++ +   +   LF  M     E NS +    +    +
Sbjct: 98  ARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTD 157

Query: 114 CGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               +  +E+ + A  +     +   ++M++  +K G +  A+K+FD MP K++V WN++
Sbjct: 158 LLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSI 217

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I GYV+     + +++   MIG G+RP+  +++++L  C      ++G   H  V    +
Sbjct: 218 IGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGM 277

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D   LT L+ MY   GD   A  +F  +  + +++WNAMISGY Q+G   ++  LF +
Sbjct: 278 GNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRR 337

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           +   G   DS T V+L+  C+    ++ G +   S +    + +     T +VD+  + G
Sbjct: 338 LVQSGSGFDSGTLVSLIRGCSQTSDLENG-RILHSCIIRKELESHLVLSTAIVDMYSKCG 396

Query: 350 KLVEAVDLIKKM 361
            + +A  +  +M
Sbjct: 397 AIKQATIVFGRM 408



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 90/182 (49%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y   G +  A  +FD+         NAMIAG++ N    +  +L RMM    I  N
Sbjct: 85  LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEIN 144

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           + +    L  C+ L   ++G ++ +   +          + +++   K G L DA K+F 
Sbjct: 145 SYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFD 204

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  KDVV WN++I GY Q G   +++++F +M   G++P  +T   LL AC  +GL  +
Sbjct: 205 GMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKV 264

Query: 318 GI 319
           G+
Sbjct: 265 GM 266



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K +H  + K+ +  ++     LI +Y   G L  A  +F +    +    NAMI+G+ ++
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
            +  +  RLF  M    ++ +S T +  L AC      ++G++   + V   G       
Sbjct: 124 QQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRR-GFHLHLYV 182

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            + MV+ L + G L +A  +   MP K
Sbjct: 183 GSSMVNFLVKRGYLADAQKVFDGMPEK 209


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/458 (44%), Positives = 280/458 (61%), Gaps = 2/458 (0%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G L   + L + A       +  +I+ Y + G++  A  LFDEMP +N V+W+AM+ GYV
Sbjct: 126 GSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV 185

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +     + L++   M    +RP+ + L  VL  C+   +L+ GK VH  +    +  +  
Sbjct: 186 QAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLF 245

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
             T L+ MY KCG+++ A  +F  +Q K+V+ W  MI G A HG+G +A+ LF +M+  G
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSG 305

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           ++PD I F+ +L AC HAGLVD G + FDSMV  YGI  K +HY CMVDLL R G L EA
Sbjct: 306 IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEA 365

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
            ++I+KMP +P   I+G L++ CR HK ++ AE+ A +   L P + +G YV L+NIYAA
Sbjct: 366 KEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEP-DKSGAYVLLSNIYAA 424

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
             +      IR  M+E  V K PG S +EV  V+H+F  GD  HP +  I  K  E++ R
Sbjct: 425 SGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTR 484

Query: 475 MKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++L  GY+PD++  L  + EE KE  L  HSEKLAIAF LI +    PIR+FKNLRVC D
Sbjct: 485 IRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHD 544

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH  TK IS +  REI+VRD TRFH FK+GTCSC DYW
Sbjct: 545 CHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 41/256 (16%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D +++NT+I+ + +   +A AR LF  MP +N+VSWSAM++GY++ G   +A+ +F    
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201

Query: 126 ---VAPVKSVVA----------------W-----------------TAMISGYMKFGKVD 149
              V P  +V+                 W                 TA++  Y K G+V 
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
           LA  +F+ M  KN++ W  MI G   +    + + L   M   GIRP+  +   VL  C+
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321

Query: 210 HLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTW 267
           H   +  G+++   +V K  +         ++ +  + G L +A ++  ++    D + W
Sbjct: 322 HAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIW 381

Query: 268 NAMISGYAQHGKGEKA 283
            A+++G   H   E A
Sbjct: 382 GALMAGCRFHKNVEFA 397


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 312/520 (60%), Gaps = 11/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI-------SGYIEC 114
           F ++P KD  +W  MI G+ +  ++  A   F  M  +  V     +       SG ++ 
Sbjct: 180 FDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKD 239

Query: 115 GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIA 171
           G L K++   + K      V    A+I  Y K   V+ A ++    P   N+V+  +MI 
Sbjct: 240 GWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMID 299

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY+E    E+ L +   +   G+ PN  + SS++ GC+  + L+ G Q+H  V K+ L +
Sbjct: 300 GYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR 359

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D+   + L+ MY KCG +  + +LF EI+ +  + WNA+I+ +AQHG G +A++ FD+M 
Sbjct: 360 DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMI 419

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++P+ I FV+LL AC+HAGLVD G++YF SM   +GI  K +HY+C++D  GRAG+L
Sbjct: 420 YSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRL 479

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA   I +MP KP    + +LL ACR+    +L E AA NL  L P N  G +V L+ I
Sbjct: 480 DEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGN-TGIHVSLSGI 538

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA++ +W+DV  +R  M+++ + K+PG+SW++     H F S D  HP+   I+EKL+EL
Sbjct: 539 YASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEEL 598

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R+K  GY+PD  F    + +  KE++L +HSE++A+AF LI +P   PI V KNLR+C
Sbjct: 599 TTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRIC 658

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH A K+I  +E+R+IIVRD +RFHHF +G CSCGDYW
Sbjct: 659 IDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 193/490 (39%), Gaps = 101/490 (20%)

Query: 2   NVKTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA 57
           +  TTV+  S+L    +    +RG+L  A+ +            N +++ +  +  D+ +
Sbjct: 16  DAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLIT-MYSHCADLAS 74

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQ---------------KKNMAKAR------------ 90
           A   F  +P ++  SW T++SG  Q               +  +A  R            
Sbjct: 75  ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAA 134

Query: 91  ---------------------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
                                +LF+A         S +   Y +CG L +A  +F   P 
Sbjct: 135 LGAPLPGAQLHCVGVRLGFDTELFVA---------SNLADMYSKCGLLSEACRVFDQMPQ 185

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           K  VAWTAMI GY K G ++ A   F +M  + LV  +  +                   
Sbjct: 186 KDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHV------------------- 226

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                        SVL     L    L K +H  V K+    +      LI MY K  D+
Sbjct: 227 -----------FCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDV 275

Query: 250 EDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           E A ++  ++    +VV+  +MI GY +    E+AL ++ +++ +G++P+  TF +++  
Sbjct: 276 ESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 335

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
           C    L++ G Q    ++    I    D +  + +VD+ G+ G +  ++ L  ++ ++  
Sbjct: 336 CAMQALLEQGAQLHAQVIKTDLIR---DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 392

Query: 367 PAIFGTL-LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
            A    + + A   H R  +  F  M    + P + A  +V L    +     D+  +  
Sbjct: 393 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIA--FVSLLTACSHAGLVDEGLKYF 450

Query: 426 LSMKENNVVK 435
            SMKE + ++
Sbjct: 451 YSMKEAHGIE 460


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 322/515 (62%), Gaps = 14/515 (2%)

Query: 69   DTASWNTMISGFVQKK-NMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL 123
            D  SWN++I      + +M +A + FL M     + N V++  +++        +   ++
Sbjct: 555  DHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQI 614

Query: 124  FKVAPVKSVVAWTA----MISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSW 178
              +   ++V A TA    +++ Y K G +   E +F  M  + + V+WN+MI+GY+ N  
Sbjct: 615  HALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNEL 674

Query: 179  AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
                + ++  M+  G R +  + ++VL  C+ +++L+ G +VH    ++ L  D    + 
Sbjct: 675  LPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSA 734

Query: 239  LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            L+ MY KCG ++ A + F  +  +++ +WN+MISGYA+HG G K+L LF +MK +G  PD
Sbjct: 735  LVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPD 794

Query: 299  SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
             +TFV +L AC+HAGLV+ G  +FDSM   YG+A + +H++CMVDLLGR G+L +  D +
Sbjct: 795  HVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFL 854

Query: 359  KKMPFKPQPAIFGTLLSA-CRVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
             +MP KP   I+ T+L A CR + R   L   AA  L  + P NA   Y+ L+N+YA+  
Sbjct: 855  NQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVN-YILLSNMYASGG 913

Query: 417  KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
            KWDDVA+ R++M++  V K  G SW+ +   VH F +GD+ HPE   I+EKLKEL  +M+
Sbjct: 914  KWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMR 973

Query: 477  LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
            LAGY+P+  FAL+ +  E KE+LL +HSEK+A+AF L + P   PIR+ KNLRVCGDCH 
Sbjct: 974  LAGYIPETRFALYDLEGESKEELLSYHSEKIAVAFVLTR-PSKMPIRILKNLRVCGDCHS 1032

Query: 537  ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            A KYIS I +R+I++RD+ RFHHF++G CSCGD+W
Sbjct: 1033 AFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 17/300 (5%)

Query: 114 CGQLDKA---VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           CG  D     ++LFK   V  +     +I+ Y + G +    K+FDEMP +NLV+W+ +I
Sbjct: 87  CGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLI 146

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS--SLQLGKQVHQLVFKSP 228
           +GY  N    +  +L R M+  G  PN  +  SV+  C       L+ G Q+H L+ K+ 
Sbjct: 147 SGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQ 206

Query: 229 LCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
              D TA   LISMY    G ++ A + F  I  +++V+ N+MIS Y Q G    A  +F
Sbjct: 207 YVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIF 266

Query: 288 DKMKDE----GMKPDSITFVALLLA-CN--HAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
             M+ E    G+KP+  TF +L+ A C+  ++GLV L  +   + V   G        + 
Sbjct: 267 STMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLL--EQLLTRVEKSGFLHDLYVGSA 324

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE-FAAM-NLFNLNP 398
           +V    +AG +  A ++ +KM ++   ++ G ++   R  +  +  E F  M +   LNP
Sbjct: 325 LVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNP 384



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 24/316 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +++ +    G +  A+  FD I   ++VS N M+S +     D V+AFD F       
Sbjct: 215 NVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMIS-VYCQRGDAVSAFDIFS------ 267

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T     M  G   K N      L        S + S   SG +   QL   VE  K   +
Sbjct: 268 TMQKEVMGDGL--KPNEYTFGSLI-------SATCSLANSGLVLLEQLLTRVE--KSGFL 316

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
             +   +A++SG+ K G +  A+ +F +M  +N+V+ N +I G V     E+ ++L  M 
Sbjct: 317 HDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF-ME 375

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGK----QVHQLVFKSPLCKDTTAL-TPLISMYC 244
           +   +  N +S   +L        L+ GK    +VH  + +S L     A+   LI+MY 
Sbjct: 376 MKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG + DAC +F  +  KD VTWN+MI+G  Q+ +  +A++ F +M+   + P + T ++
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 305 LLLACNHAGLVDLGIQ 320
            L +C   G + +G Q
Sbjct: 496 ALSSCASLGWISVGEQ 511



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 23/302 (7%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISG 79
           KDA+EL  ++ +   V+ ++ L   L+N      D+ +    F  +P+++  SW+ +ISG
Sbjct: 90  KDAEELHLQLFKNGFVN-DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISG 148

Query: 80  FVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ--LDKAVELF----KVAPV 129
           + + +   +A +LF  M       N  ++ ++I    ECG+  L   +++     K   V
Sbjct: 149 YTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYV 208

Query: 130 KSVVAWTAMISGYMK-FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
             V A   +IS Y    G VD A + FD +  +NLV+ N+MI+ Y +   A     +   
Sbjct: 209 NDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFST 268

Query: 189 M----IGLGIRPNASSLSSVLLGCSHL--SSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           M    +G G++PN  +  S++     L  S L L +Q+   V KS    D    + L+S 
Sbjct: 269 MQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSG 328

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSIT 301
           + K G +  A  +F ++  ++VV+ N +I G  +  +GE+A+ LF +MKD   + P+S  
Sbjct: 329 FAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYM 388

Query: 302 FV 303
            +
Sbjct: 389 II 390



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 160/339 (47%), Gaps = 15/339 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIEC 114
           A + FQ++  ++  S N +I G V++K   +A +LF+ M    E N  S+  +++ + E 
Sbjct: 338 AKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEF 397

Query: 115 GQLDKAVE--------LFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
             L+            L +   + + +A    +I+ Y K G ++ A  +F  M  K+ VT
Sbjct: 398 HVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVT 457

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN+MI G  +N    + +K  + M    + P+  ++ S L  C+ L  + +G+Q+H    
Sbjct: 458 WNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGL 517

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE-KAL 284
           K  L  D +    L+++Y +CG +++  K F  +   D V+WN++I   A       +A+
Sbjct: 518 KLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAV 577

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
             F  M   G  P+ +TF+ +L A +   L +LG Q   ++V    +AA       ++  
Sbjct: 578 ESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ-IHALVLKRNVAADTAIENALLAC 636

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            G+ G +    ++  +M  +     + +++S   +H  L
Sbjct: 637 YGKCGDMGYCENIFSRMSDRQDEVSWNSMISG-YIHNEL 674



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLA 95
           D    N +L+C      D+    + F R+  + D  SWN+MISG++  + + KA D+   
Sbjct: 626 DTAIENALLAC-YGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWF 684

Query: 96  MPEK----NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGK 147
           M +K    +  +++ ++S       L++ +E+     +      +V  +A++  Y K G+
Sbjct: 685 MMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGR 744

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +D A + F+ MP +NL +WN+MI+GY  +      L L   M   G  P+  +   VL  
Sbjct: 745 IDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSA 804

Query: 208 CSH 210
           CSH
Sbjct: 805 CSH 807



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 14/126 (11%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIE 113
           A  FF+ +P ++  SWN+MISG+ +  +  K+ DLF  M    P  + V++  ++S    
Sbjct: 748 ASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSH 807

Query: 114 CG-------QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVT 165
            G         D   E++ +AP   +  ++ M+    + G+++  E   ++MP K N++ 
Sbjct: 808 AGLVNEGFSHFDSMSEIYGLAP--RMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLI 865

Query: 166 WNAMIA 171
           W  ++ 
Sbjct: 866 WRTVLG 871


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/437 (45%), Positives = 283/437 (64%), Gaps = 2/437 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            +++  Y   G V  A K+FD+MP K+LV WN++I G+ EN   E+ L L   M   GI+
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  ++ S+L  C+ + +L LGK+VH  + K  L ++  +   L+ +Y +CG +E+A  L
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGL 314
           F E+  K+ V+W ++I G A +G G++A+ LF  M+  EG+ P  ITFV +L AC+H G+
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           V  G +YF  M  +Y I  + +H+ CMVDLL RAG++ +A + IK MP +P   I+ TLL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            AC VH   DLAEFA + +  L P N +G YV L+N+YA+ ++W DV +IR  M  + V 
Sbjct: 267 GACTVHGDSDLAEFARIQILQLEP-NHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVK 325

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K+PG+S +EVG  VHEF  GD+ HP+  +I+ KLKE+  R++  GYVP +      V EE
Sbjct: 326 KVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 385

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE  +++HSEK+AIAF LI  P  +PI V KNLRVC DCH A K +S +  REI+VRD 
Sbjct: 386 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 445

Query: 555 TRFHHFKDGTCSCGDYW 571
           +RFHHFK+G+CSC DYW
Sbjct: 446 SRFHHFKNGSCSCQDYW 462



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           ++ ++LG+ +H +V +S           L+ +Y  CGD+  A K+F ++  KD+V WN++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I+G+A++GK E+AL L+ +M  +G+KPD  T V+LL AC   G + LG +    M+   G
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VG 119

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +         ++DL  R G++ EA  L  +M
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 150



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 42/277 (15%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSA 106
           N  DV +A+  F ++P KD  +WN++I+GF +     +A  L+  M  K    +  +  +
Sbjct: 35  NCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 94

Query: 107 MISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           ++S   + G L       V + KV   +++ +   ++  Y + G+V+ A+ LFDEM  KN
Sbjct: 95  LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 154

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            V+W ++I G   N + ++ ++L + M    G+ P   +   +L  CSH   ++ G +  
Sbjct: 155 SVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYF 214

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
           + +      ++   + P I  +                          M+   A+ G+ +
Sbjct: 215 RRM------REEYKIEPRIEHF------------------------GCMVDLLARAGQVK 244

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           KA   ++ +K   M+P+ + +  LL AC   G  DL 
Sbjct: 245 KA---YEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V WNSV+ GFA + GK ++A  L+ ++    +      +   LL++   + A  
Sbjct: 49  MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMNSKGIKPDGFTIVS-LLSACAKIGALT 106

Query: 61  FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +R+ +        ++  S N ++  + +   + +A+ LF  M +KNSVSW+++I G  
Sbjct: 107 LGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 166

Query: 113 ECGQLDKAVELFK 125
             G   +A+ELFK
Sbjct: 167 VNGFGKEAIELFK 179


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 313/535 (58%), Gaps = 48/535 (8%)

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG--QLDKAVELFK-------VAP- 128
           G VQ+     AR +F  M E N +SW+A+++GY+  G     +A+ +F        VAP 
Sbjct: 311 GLVQE-----ARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPN 365

Query: 129 -------VKSVVAW-------------------------TAMISGYMKFGKVDLAEKLFD 156
                  +K+  +                            ++S Y K G+++ A K FD
Sbjct: 366 CFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFD 425

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            +  KNLV+   +    V++        L R +  +G   ++ + +S+L G + + ++  
Sbjct: 426 VLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGK 485

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+Q+H +V K     D +    LISMY KCG+ E A ++F +++  +V+TW ++I+G+A+
Sbjct: 486 GEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAK 545

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG   KAL LF  M + G+KP+ +T++A+L AC+H GL+D   ++F SM +++GI  + +
Sbjct: 546 HGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRME 605

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY CMVDLLGR+G L EA++ I  MPF     ++ T L +CRVH+   L E AA  +   
Sbjct: 606 HYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILER 665

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P + A  Y+ L+N+YA   +W+DVA IR +MK+  + K  G SWIEV   VH+F  GD 
Sbjct: 666 EPHDPA-TYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDT 724

Query: 457 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 516
           +HP+   I+EKL EL  ++K  GYVP+ +F LH V +E KEQ L  HSEKLA+AF LI  
Sbjct: 725 LHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALIST 784

Query: 517 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           P   PIRVFKNLRVCGDCH A KYIS +  REI+VRD  RFHH KDGTCSC DYW
Sbjct: 785 PNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 175/350 (50%), Gaps = 28/350 (8%)

Query: 32  KIPQPDVVSYNIMLSCILLNS--------DDVVAAFDFFQRL--PIKDTASWNTMISGFV 81
           K+    + + N+ L  +LLNS        +D + AF  FQ +    +D  S++++IS F 
Sbjct: 72  KLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFA 131

Query: 82  QKKNMAKARDLFLAMPEKNSV-----SWSAMISGYIECGQLDKAVELF----KVAPVKS- 131
             +N  KA ++F  +  ++ V      ++A+I   ++ G     + LF    K     S 
Sbjct: 132 NNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSH 191

Query: 132 VVAWTAMISGYMK---FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LR 187
           V     +I  ++K      ++ A K+FD+M  KN+VTW  MI    +  + ++ + L L 
Sbjct: 192 VCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLE 251

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           M++  G  P+  +L+ ++  C+ +  L LGK++H  V +S L  D      L+ MY KCG
Sbjct: 252 MLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCG 311

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG--EKALRLFDKMKDE-GMKPDSITFVA 304
            +++A K+F  ++  +V++W A+++GY + G G   +A+R+F  M  + G+ P+  TF  
Sbjct: 312 LVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSG 371

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +L AC      D G Q     +   G++A       +V +  ++G++  A
Sbjct: 372 VLKACASLPDFDFGEQVHGQTIK-LGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 48/259 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKL-KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           M     ++W +++ G+ +  G   ++A  +F  +     V+ N      +L +   +  F
Sbjct: 323 MREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDF 382

Query: 60  DFFQRL---PIKDTAS-----WNTMISGFVQKKNMAKARDLFLAMPEKNSVS-------- 103
           DF +++    IK   S      N ++S + +   M  AR  F  + EKN VS        
Sbjct: 383 DFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTN 442

Query: 104 ---------------------------WSAMISGYIECGQLDKAVEL----FKVAPVKSV 132
                                      +++++SG    G + K  ++     K+     +
Sbjct: 443 VKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDL 502

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
               A+IS Y K G  + A ++F++M   N++TW ++I G+ ++ +A   L+L   M+  
Sbjct: 503 SVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLET 562

Query: 193 GIRPNASSLSSVLLGCSHL 211
           G++PN  +  +VL  CSH+
Sbjct: 563 GVKPNDVTYIAVLSACSHV 581



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 13/138 (9%)

Query: 202 SSVLL-GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LE 258
           SS+LL  C    +  LGK +H  +  S L  DT  L  LI++Y K  D   A  +F  +E
Sbjct: 55  SSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSME 114

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLACNHAGLVDL 317
             ++DVV+++++IS +A +    KA+ +FD+ +  +G+ P+   F A++ AC   G    
Sbjct: 115 NSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKT 174

Query: 318 GI---------QYFDSMV 326
           G+          YFDS V
Sbjct: 175 GLCLFGFVLKTGYFDSHV 192


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 301/518 (58%), Gaps = 10/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +P +D  SW  +I+GFV +   +  R     + E  + +    IS    C  L   V
Sbjct: 249 FGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD-V 307

Query: 122 ELFKVAPVKSV--------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +L K    + V           TA++  Y K   ++ AE +F+ +  ++L  W  ++AGY
Sbjct: 308 DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 367

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++   E  +K    M   G++PN  +L+S L GCS +++L  G+Q+H +  K+    D 
Sbjct: 368 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDM 427

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+ MY KCG +EDA  +F  +  +D V+WN +I GY+QHG+G KAL+ F+ M DE
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 487

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G  PD +TF+ +L AC+H GL++ G ++F+S+   YGI    +HY CMVD+LGRAGK  E
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 547

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
               I++M       I+ T+L AC++H  ++  E AAM LF L P   +  Y+ L+N++A
Sbjct: 548 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSN-YILLSNMFA 606

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A   WDDV  +R  M    V K PG SW+EV   VH F S D  HP++  IH KL++L +
Sbjct: 607 AKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQ 666

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++   GY P+ +  LH V +  K++LL +HSE+LA+AF L+       IR+FKNLR+CGD
Sbjct: 667 KLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGD 726

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K IS I  +E++VRD   FHHFK+G+CSC ++W
Sbjct: 727 CHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + +  + +  A    + +PI+D   WN  +S       + +A  LF  M       N   
Sbjct: 33  VYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFI 92

Query: 104 WSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           ++++IS     G       +     K      ++   A ++ YMK   V+   + F  M 
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +NL + N +++G+ +    + G ++L  ++  G  PN  +  S+L  C+    L  GK 
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA 212

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  V KS +  D+     L+++Y KCG    ACK+F EI  +DVV+W A+I+G+   G 
Sbjct: 213 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY 272

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV------NDYGIAA 333
           G   LR+F++M  EG  P+  TF+++L +C+    VDLG Q    +V      ND+   A
Sbjct: 273 G-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 334 KPDHY 338
             D Y
Sbjct: 332 LVDMY 336



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 106/228 (46%), Gaps = 1/228 (0%)

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W+++++ Y+K   +  A ++ +EMP +++  WN  ++        ++ ++L  +M    I
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           R N    +S++   + L     G+ +H  V K     D       ++MY K   +E+  +
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F  +  +++ + N ++SG+      ++  R+  ++  EG +P+  TF+++L  C   G 
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++ G +     V   GI      +  +V++  + G    A  +  ++P
Sbjct: 207 LNEG-KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K+ +C D+   + L+++Y KC  L+ A ++  E+  +DV  WN  +S        ++A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 284 LRLFDKMKDEGMKPDSITFVALLLAC-----NHAG 313
           ++LF  M+   ++ +   F +L+ A      NH G
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYG 109


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 308/531 (58%), Gaps = 18/531 (3%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+  A   F R+  +D  SWNTMISG+ +  +   A  +F  M +    +    + G + 
Sbjct: 211 DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLS 270

Query: 114 -CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDL------------AEKLFDEMPT 160
            C  L KAV+  KV    +V      I  Y KF    L            A +LF+ +  
Sbjct: 271 ACADL-KAVKEGKVIHGYAV---RNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRW 326

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           K+ V+WN+MI GY  N  A + L+L R M   G  P+  +  +VL  C  +++L+ G  +
Sbjct: 327 KDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSI 386

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
           H  + K     +T   T L+ MY KCG L  + ++F E+  K +V+W+AM++GY  HG+G
Sbjct: 387 HSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRG 446

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            +A+ + D MK   + PD+  F ++L AC+HAGLV  G + F  M  +Y +     HY+C
Sbjct: 447 REAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSC 506

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDLLGRAG L EA  +I+ M  KP   I+  LL+A R+HK + LAE +A  +F++NP  
Sbjct: 507 MVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNP-K 565

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
               Y+ L+NIYAA K+WDDV R+R  ++   + K PG S+IE+  +VH F  GD+ H +
Sbjct: 566 VVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQ 625

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+ KL EL++++K AGY PD     + V EEVKE++L  HSE+LAIAF LI    GT
Sbjct: 626 TEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGT 685

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IR+ KNLRVCGDCH  TK IS +  REII+RD  RFHHF  G CSCGDYW
Sbjct: 686 VIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 153/374 (40%), Gaps = 39/374 (10%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T + + Y   G +  AE +FD +  KN   WN MI GY  N      L L R M+  G R
Sbjct: 99  TKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQR 158

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  +   VL  C  L  +++G++VH  V    L  D      L++MY K GD+  A  +
Sbjct: 159 ADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMV 218

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +D+ +WN MISGYA++     A  +FD M   G+  D  T + LL AC     V
Sbjct: 219 FDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAV 278

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
             G      +++ Y +     +Y       ++++      +V+A  L +++ +K   +  
Sbjct: 279 KEG-----KVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWN 333

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
             +L   R     +   F ++ LF     + +G         A +   D +A +R  M  
Sbjct: 334 SMILGYAR-----NGDAFESLRLFRRMALDGSG--PDQVTFIAVLGACDQIAALRYGMSI 386

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE----- 485
           ++ +   G            F +   V   LV ++ K   L    ++   +PD       
Sbjct: 387 HSYLVKKG------------FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWS 434

Query: 486 -----FALHAVGEE 494
                + LH  G E
Sbjct: 435 AMVAGYGLHGRGRE 448



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 115/237 (48%), Gaps = 10/237 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS----VSWSA 106
           N + +V A   F+R+  KDT SWN+MI G+ +  +  ++  LF  M    S    V++ A
Sbjct: 310 NCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIA 369

Query: 107 MISGYIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           ++    +   L   +     L K     + +  TA++  Y K G +  + ++FDEMP K+
Sbjct: 370 VLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKS 429

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           LV+W+AM+AGY  +    + + +L  M    + P+    +S+L  CSH   +  GK++  
Sbjct: 430 LVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFY 489

Query: 223 LVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLFLEIQRKDVV-TWNAMISGYAQH 277
            + K    K   +  + ++ +  + G L++A  +   ++ K     W A+++    H
Sbjct: 490 KMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQR 261
           ++L   ++  S + G+Q+H  +    + ++ T L T L + Y  CG +  A  +F  I  
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           K+   WN MI GYA +G   K+L L+ +M   G + D+ T+  +L AC    LV++G
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIG 180


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 312/520 (60%), Gaps = 11/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI-------SGYIEC 114
           F ++P KD  +W  MI G+ +  ++  A   F  M  +  V     +       SG ++ 
Sbjct: 329 FDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKD 388

Query: 115 GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIA 171
           G L K++   + K      V    A+I  Y K   V+ A ++    P   N+V+  +MI 
Sbjct: 389 GWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMID 448

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY+E    E+ L +   +   G+ PN  + SS++ GC+  + L+ G Q+H  V K+ L +
Sbjct: 449 GYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR 508

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D+   + L+ MY KCG +  + +LF EI+ +  + WNA+I+ +AQHG G +A++ FD+M 
Sbjct: 509 DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMI 568

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++P+ I FV+LL AC+HAGLVD G++YF SM   +GI  K +HY+C++D  GRAG+L
Sbjct: 569 YSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRL 628

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA   I +MP KP    + +LL ACR+    +L E AA NL  L P N  G +V L+ I
Sbjct: 629 DEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGN-TGIHVSLSGI 687

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA++ +W+DV  +R  M+++ + K+PG+SW++     H F S D  HP+   I+EKL+EL
Sbjct: 688 YASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEEL 747

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             R+K  GY+PD  F    + +  KE++L +HSE++A+AF LI +P   PI V KNLR+C
Sbjct: 748 TTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRIC 807

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH A K+I  +E+R+IIVRD +RFHHF +G CSCGDYW
Sbjct: 808 IDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 191/477 (40%), Gaps = 82/477 (17%)

Query: 5   TTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           TTV+  S+L    +    +RG+L  A+ +            N +++ +  +  D+ +A  
Sbjct: 169 TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLIT-MYSHCADLASALR 227

Query: 61  FFQRLPIKDTASWNTMISGFVQ---------------KKNMAKAR--------------- 90
            F  +P ++  SW T++SG  Q               +  +A  R               
Sbjct: 228 LFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 287

Query: 91  -DLFLAMPEKNSVSW-------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                +     SV +       S +   Y +CG L +A  +F   P K  VAWTAMI GY
Sbjct: 288 PLRARSCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 347

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K G ++ A   F +M  + LV  +  +                                
Sbjct: 348 AKNGSLEAAVLSFRDMKREGLVGADQHV------------------------------FC 377

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQR 261
           SVL     L    L K +H  V K+    +      LI MY K  D+E A ++  ++   
Sbjct: 378 SVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGG 437

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
            +VV+  +MI GY +    E+AL ++ +++ +G++P+  TF +++  C    L++ G Q 
Sbjct: 438 WNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQL 497

Query: 322 FDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL-LSACR 378
              ++    I    D +  + +VD+ G+ G +  ++ L  ++ ++   A    + + A  
Sbjct: 498 HAQVIKTDLIR---DSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQH 554

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
            H R  +  F  M    + P + A  +V L    +     D+  +   SMKE + ++
Sbjct: 555 GHGREAIQAFDRMIYSGIRPNHIA--FVSLLTACSHAGLVDEGLKYFYSMKEAHGIE 609



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 201 LSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           L+S+L  C     L+ G+ +H +LV        T     LI+MY  C DL  A +LF  +
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
            R++ V+W  ++SG +Q+     AL  F  M+  G+ P  + +
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIY 125


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/520 (40%), Positives = 305/520 (58%), Gaps = 13/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--ECGQLDK 119
           F R+ IKD  SW T+I+ + Q    ++A   F    +K  +    M+ G I   C  L K
Sbjct: 423 FDRMRIKDHVSWTTIIACYAQSSRYSEAIGKF-RTAQKEGIKVDPMMMGSILEACSGL-K 480

Query: 120 AVELFKVAPVKSV-------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           ++ L K     ++       +    +I  Y + G+V  A  +F+ +  K++VTW +M+  
Sbjct: 481 SISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNC 540

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           + EN    + + L   M+  GI+P++ +L  +L   + LSSL  GK++H  + +     +
Sbjct: 541 FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 600

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
              ++ L+ MY  CG +  A K+F E + KDVV W AMI+    HG G++A+ +F +M +
Sbjct: 601 GAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLE 660

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+ PD ++F+ALL AC+H+ LVD G  Y D MV+ Y +    +HY C+VDLLGR+G+  
Sbjct: 661 TGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTE 720

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA   IK MP +P+  ++  LL ACR+HK  +LA  A   L  L P N  G YV ++N++
Sbjct: 721 EAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDN-PGNYVLVSNVF 779

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A M KW++V  IR  M E  + K P  SWIE+G  VH F + D  H +  +IH KL E+ 
Sbjct: 780 AEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEIT 839

Query: 473 KRMKLAG-YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
           ++++  G YV D  F LH V EE K  LL  HSE+LAI+FGLI    GTP+R+ KNLRVC
Sbjct: 840 EKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVC 899

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH  TK +S + +REI+VRD  RFHHF  GTCSCGD+W
Sbjct: 900 GDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 199/435 (45%), Gaps = 56/435 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL---NSDDVVA 57
           MN  TTV    V A  A+    L   +EL   + +     +NI  + +L+       V +
Sbjct: 263 MNSYTTVGVLQVCAELAQ----LNHGRELHAALLKCGT-EFNIQCNALLVMYARCGWVDS 317

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A   F+ +  KD  SWN+M+S +VQ +  A+A D F  M +     +     +++S    
Sbjct: 318 ALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGH 377

Query: 114 CGQLDKAVELFKVAPVKSV-----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            G+L    E+   A  + +     +A T M   Y+K   V+ + ++FD M  K+ V+W  
Sbjct: 378 LGRLINGREVHAYAVKQRLDSDLQIANTLM-DMYIKCYSVECSARVFDRMRIKDHVSWTT 436

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           +IA Y ++S   + +   R     GI+ +   + S+L  CS L S+ L KQVH    ++ 
Sbjct: 437 IIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNG 496

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L  D      +I +Y +CG++  A  +F  + +KD+VTW +M++ +A++G   +A+ LF 
Sbjct: 497 LL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFG 555

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLG----IQYF-------------DSMVNDYGI 331
           KM + G++PDS+  V +L A   AGL  L     I  F              S+V+ Y  
Sbjct: 556 KMLNAGIQPDSVALVGILGAI--AGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSG 613

Query: 332 AAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTL 373
               ++               +T M++  G  G   +A+ + K+M      P    F  L
Sbjct: 614 CGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLAL 673

Query: 374 LSACRVHKRLDLAEF 388
           L AC   K +D  +F
Sbjct: 674 LYACSHSKLVDEGKF 688



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 40/332 (12%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           +D ASWN+ ISG VQ     +A DLF  M       NS +   ++    E  QL+   EL
Sbjct: 228 RDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGREL 287

Query: 124 FKV---APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                    +  +   A++  Y + G VD A ++F E+  K+ ++WN+M++ YV+N    
Sbjct: 288 HAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYA 347

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + +     M+  G  P+ + + S+L    HL  L  G++VH    K  L  D      L+
Sbjct: 348 EAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLM 407

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KC  +E + ++F  ++ KD V+W  +I+ YAQ  +  +A+  F   + EG+K D +
Sbjct: 408 DMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPM 467

Query: 301 TFVALLLACN-----------HA-----GLVDLGIQYFDSMVNDYG-------------I 331
              ++L AC+           H+     GL+DL ++  + +++ YG             +
Sbjct: 468 MMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILK--NRIIDIYGECGEVCYALNIFEM 525

Query: 332 AAKPD--HYTCMVDLLGRAGKLVEAVDLIKKM 361
             K D   +T MV+     G L EAV L  KM
Sbjct: 526 LDKKDIVTWTSMVNCFAENGLLHEAVALFGKM 557



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 128/279 (45%), Gaps = 39/279 (13%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG---- 191
           T ++  Y K G++  A +LFD MP + + +WNA+I   + +  A + + + R M      
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G  P+  +L+SVL  C      + G +VH L  KS L + T     L+ MY KCG L+ 
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDS 216

Query: 252 ACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           A ++F E  R  +DV +WN+ ISG  Q+G   +AL LF +M+ +G   +S T V +L  C
Sbjct: 217 ALRVF-EWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 310 N-----------HAGLVDLGIQY----------------FDSMVNDYGIAAKPDH--YTC 340
                       HA L+  G ++                 DS +  +      D+  +  
Sbjct: 276 AELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNS 335

Query: 341 MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSA 376
           M+    +     EA+D   +M    F P  A   +LLSA
Sbjct: 336 MLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 155/377 (41%), Gaps = 78/377 (20%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV----APV------------ 129
           +  A  LF  MP +   SW+A+I   +  G   +AV +++      PV            
Sbjct: 109 LPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLAS 168

Query: 130 ---------------------------KSVVAWTAMISGYMKFGKVDLAEKLFDEM-PTK 161
                                      +S +   A++  Y K G +D A ++F+ M   +
Sbjct: 169 VLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGR 228

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++ +WN+ I+G V+N    + L L R M   G   N+ +   VL  C+ L+ L  G+++H
Sbjct: 229 DVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELH 288

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             + K    +       L+ MY +CG ++ A ++F EI  KD ++WN+M+S Y Q+    
Sbjct: 289 AALLKCGT-EFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYA 347

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLV-----------------DLGI--QYF 322
           +A+  F +M   G  PD    V+LL A  H G +                 DL I     
Sbjct: 348 EAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLM 407

Query: 323 DSMVNDYGIAAKP---------DH--YTCMVDLLGRAGKLVEAVDLIK---KMPFKPQPA 368
           D  +  Y +             DH  +T ++    ++ +  EA+   +   K   K  P 
Sbjct: 408 DMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPM 467

Query: 369 IFGTLLSACRVHKRLDL 385
           + G++L AC   K + L
Sbjct: 468 MMGSILEACSGLKSISL 484


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 301/525 (57%), Gaps = 10/525 (1%)

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGY 111
             AA   F R+  +D  +WN++I+G+ Q  +   A D+F    L+    ++ +   ++   
Sbjct: 482  TAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 112  IECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTW 166
                 LD+       + K+          A+I  Y K G +  AE LF++   TK+ VTW
Sbjct: 542  ALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 167  NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            N +IA Y++N  A++ +     M      PN+ +  SVL   ++L++ + G   H  + +
Sbjct: 602  NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 227  SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                 +T     LI MY KCG L+ + KLF E+  KD V+WNAM+SGYA HG G++A+ L
Sbjct: 662  MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721

Query: 287  FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            F  M++  ++ DS++FV++L AC HAGLV+ G + F SM + Y I    +HY CMVDLLG
Sbjct: 722  FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 781

Query: 347  RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
            RAG   E +  IK MP +P   ++G LL +CR+H  + L E A  +L  L P N A  +V
Sbjct: 782  RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAH-FV 840

Query: 407  QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
             L++IYA   +W D  + R  M +  + K PG SW+E+   VH FR GD+ HP+L S+H 
Sbjct: 841  VLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL 900

Query: 467  KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
                L ++M+  GYVPD    L  V EE KE  L  HSE+LAI F L+  P G+ I++ K
Sbjct: 901  LWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVK 960

Query: 527  NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            NLRVC DCH  TK+IS I  R IIVRD TRFHHF+DG CSC DYW
Sbjct: 961  NLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 214/472 (45%), Gaps = 80/472 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI------------- 67
           G LK A+E+FDK+P+ DVV++N M++  L  S+D   A DFF+ + +             
Sbjct: 178 GDLKRAREVFDKMPKRDVVAWNAMIAG-LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNL 236

Query: 68  ----------------------KD--TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS 103
                                 +D  +A  N +I  + +  ++  AR +F  M +++ VS
Sbjct: 237 FPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 104 WSAMISGYIECGQLDKAVELF-----------KVAPVKSVVAW----------------- 135
           W  M++GY   G   + +ELF           KV+ V + +A                  
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 136 -----------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                      T ++  Y K G+ + A++LF  +  ++LV W+A+IA  V+  + E+ L 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L + M    ++PN  +L S+L  C+ LS L+LGK +H    K+ +  D +  T L+SMY 
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYA 476

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG    A   F  +  +D+VTWN++I+GYAQ G    A+ +F K++   + PD+ T V 
Sbjct: 477 KCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVG 536

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           ++ AC     +D G      ++   G  +       ++D+  + G L  A  L  K  F 
Sbjct: 537 VVPACALLNDLDQGT-CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFT 595

Query: 365 PQPAIFGTLLSAC--RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
                +  +++A     H +  ++ F  M L N +P +     V  A  Y A
Sbjct: 596 KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLA 647



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F   P      WN+MI  + + K   +A +++  M EK    +  +++ ++        L
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNL 145

Query: 118 DKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            + V    E+ +    + V     ++  Y K G +  A ++FD+MP +++V WNAMIAG 
Sbjct: 146 QEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGL 205

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++    + +   R M  +G+ P++ SL ++  G   LS+++L + +H  VF+      +
Sbjct: 206 SQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--SS 263

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI +Y KCGD++ A ++F ++  +D V+W  M++GYA +G   + L LFDKMK  
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 323

Query: 294 GMKPDSITFVALLLA 308
            ++ + ++ V+  LA
Sbjct: 324 NVRINKVSAVSAFLA 338



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I+ Y  F K DLA  +FD  P  + + WN+MI  Y  +    + L++   M+  G+ 
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  + + VL  C+   +LQ G   H  + +  L +D      L+ MY K GDL+ A ++
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           F ++ ++DVV WNAMI+G +Q     +A+  F  M+  G++P S++ + L 
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C HL+ L    Q+H  +  S   K   ++T LI++Y      + A  +F       
Sbjct: 38  LLSSCKHLNPLL---QIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNPS 93

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
            + WN+MI  Y +  +  +AL ++  M ++G++PD  TF  +L AC  A  +  G+ +F 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
             ++  G+         +VD+  + G L  A ++  KMP +   A    +    +     
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPC 212

Query: 384 DLAE-FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
           +  + F +M L  + P++     V L N++  + K  ++   R
Sbjct: 213 EAVDFFRSMQLVGVEPSS-----VSLLNLFPGICKLSNIELCR 250



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 15/211 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFD 60
           +  T+  NS++  +AK  G+L  +++LF+++   D VS+N MLS   +  + D  +A F 
Sbjct: 665 LSNTLVGNSLIDMYAKC-GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 723

Query: 61  FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
             Q   ++ D+ S+ +++S       + + R +F +M +K  +      ++ M+      
Sbjct: 724 LMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRA 783

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMI 170
           G  D+ +   KV PV+     W A++        V L E   D   ++  +N   +  + 
Sbjct: 784 GLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 843

Query: 171 AGYVENS-WAEDGLKLLRMM-IGLGIRPNAS 199
           + Y ++  WA+ G    +M  +GL   P  S
Sbjct: 844 SIYAQSGRWADAGKARSKMNDLGLKKTPGCS 874


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 291/445 (65%), Gaps = 3/445 (0%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N ++  +AK RG ++ A+ELFDK+PQ DVVS+N M++  + N   +  A   FQ +P +D
Sbjct: 202 NGLVDMYAK-RGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGL-IEDALKLFQEIPKRD 259

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             +WNTM++G+ Q  ++  A +LF  MPE+N VSW+ MI+GY++ G + +A +LF++ P 
Sbjct: 260 VITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPE 319

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           ++V++W A+ISG+ + G+V+ A KLF  MP  N+V+WNAMIAGY +N  AE+ LKL   M
Sbjct: 320 RNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQM 379

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             + ++PN  + + VL  C+ L+ L+ G + H++V +S    D      L+ MY KCG +
Sbjct: 380 QMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSI 439

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           EDA K+F  ++++D  + +AMI GYA +G  +++L LF++M+  G+KPD +TFV +L AC
Sbjct: 440 EDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSAC 499

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
            HAGLVD G QYFD M   Y I    +HY CM+DLLGRAG   EA DLI KMP KP   +
Sbjct: 500 CHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADM 559

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G+LLSACR H  +DL E  A +L  LNP N A  YV L+NIYAA  +WDD+  +R  MK
Sbjct: 560 WGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAP-YVLLSNIYAAAGRWDDIGSVRNRMK 618

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSG 454
           +  V K  G SWI +   VH F  G
Sbjct: 619 DRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 202/434 (46%), Gaps = 57/434 (13%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAFDFFQR 64
           ++S+L G    +  L DA+ L   + Q      +I L      I +    +V A   F  
Sbjct: 67  YDSLLQGCLNAK-SLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDE 125

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--------------------------- 97
           +P+K+  SW  MI+ + + ++  +A   F  M                            
Sbjct: 126 MPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGEF 185

Query: 98  ---------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV 148
                    E N    + ++  Y + G ++ A ELF   P + VV+W AMI+GY++ G +
Sbjct: 186 HDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLI 245

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           + A KLF E+P ++++TWN M+AGY +    E+ ++L   M       N  S ++++ G 
Sbjct: 246 EDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKM----PEQNLVSWNTMIAGY 301

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
               S++   ++ Q++ +    ++  +   +IS + + G +E+A KLF  +   +VV+WN
Sbjct: 302 VQNGSVKEAFKLFQIMPE----RNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWN 357

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           AMI+GY+Q+G+ E AL+LF +M+   MKP++ TF  +L AC    +++ G +  + ++  
Sbjct: 358 AMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS 417

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA----IFGTLLSACRVHKRLD 384
            G  +       +V +  + G + +A  +  +M  +   +    I G  ++ C    +  
Sbjct: 418 -GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGC---SKES 473

Query: 385 LAEFAAMNLFNLNP 398
           L  F  M    L P
Sbjct: 474 LELFEQMQFTGLKP 487



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 82/389 (21%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  + WN+++AG+A Q G +++A ELF+K+P+ ++VS+N M++  + N   V  AF  FQ
Sbjct: 258 RDVITWNTMMAGYA-QCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNG-SVKEAFKLFQ 315

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P ++  SWN +ISGF Q   + +A  LF  MPE N VSW+AMI+GY + GQ + A++L
Sbjct: 316 IMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKL 375

Query: 124 FK----------------VAPV-----------------------KSVVAWTAMISGYMK 144
           F                 V P                          V+    ++  Y K
Sbjct: 376 FGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAK 435

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G ++ A K+FD M  ++  + +AMI GY  N  +++ L+L   M   G++P+  +   V
Sbjct: 436 CGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGV 495

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C H   +  G+Q   ++ +         +TP +  Y                     
Sbjct: 496 LSACCHAGLVDEGRQYFDIMTR------FYHITPAMEHY--------------------- 528

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
                MI    + G  ++A  L +KM    +KPD+  + +LL AC     +DLG      
Sbjct: 529 ---GCMIDLLGRAGCFDEANDLINKMP---IKPDADMWGSLLSACRTHNNIDLG-----E 577

Query: 325 MVNDYGIAAKPDH---YTCMVDLLGRAGK 350
            V  + IA  P +   Y  + ++   AG+
Sbjct: 578 KVAQHLIALNPQNPAPYVLLSNIYAAAGR 606



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++S Y+K G +  A ++FDEMP KN+V+W AMIA Y  +   ++ L     M  +GI+PN
Sbjct: 106 LVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPN 165

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + +S+L  C+ L  L    + H  + K     +      L+ MY K G +E A +LF 
Sbjct: 166 HFTFASILPACTDLEVL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFD 222

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++ ++DVV+WNAMI+GY Q+G  E AL+LF ++     K D IT+  ++      G V+ 
Sbjct: 223 KMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVEN 278

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLL 374
            ++ F+ M     ++     +  M+    + G + EA  L + MP +      A+     
Sbjct: 279 AVELFEKMPEQNLVS-----WNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFA 333

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANA--AGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
              +V + L L  F  M   N+   NA  AG Y Q      A+K +  +  +   MK N 
Sbjct: 334 QNGQVEEALKL--FKTMPECNVVSWNAMIAG-YSQNGQAENALKLFGQMQMV--DMKPNT 388

Query: 433 ---VVKMP---GYSWIEVGTVVHE------FRSGDRVHPELVSIHEKLKELEKRMKL 477
               + +P     + +E G   HE      F+S   V   LV ++ K   +E   K+
Sbjct: 389 ETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKV 445



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 5/183 (2%)

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPL 239
           + L +L+ M+  GI P++S+  S+L GC +  SL   K +H  + ++   C+D +    L
Sbjct: 47  EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKL 106

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +S+Y K G L +A ++F E+  K+VV+W AMI+ YA+H  G++AL  F +M+D G++P+ 
Sbjct: 107 VSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNH 166

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            TF ++L AC    L  LG ++ D +V   G  +       +VD+  + G +  A +L  
Sbjct: 167 FTFASILPACTD--LEVLG-EFHDEIVKG-GFESNVFVGNGLVDMYAKRGCIEFARELFD 222

Query: 360 KMP 362
           KMP
Sbjct: 223 KMP 225


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/561 (39%), Positives = 313/561 (55%), Gaps = 49/561 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-------------- 103
           +   F R+   +   WNTM+  ++Q  +  KA  L+  M  KN+V               
Sbjct: 82  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMV-KNNVGPDNYTYPLVVQACA 140

Query: 104 --------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                                      + +I+ Y  CG +  A +LF  +PV   V+W +
Sbjct: 141 VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 200

Query: 138 MISGYMK---FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           +++GY+K    G+V  A KLF+EM  K++V+W+A+I+GY +N   E+ L +   M   G+
Sbjct: 201 ILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM 260

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC----KCGDLE 250
           R +   + SVL  C+HLS ++ GK +H LV +  +         LI MY     KCG +E
Sbjct: 261 RLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVE 320

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           +A ++F  ++ K V +WNA+I G A +G  E++L +F +MK+ G+ P+ ITF+ +L AC 
Sbjct: 321 NALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACR 380

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H GLVD G  +F SM+  +GI     HY CMVDLLGRAG L EA  LI+ MP  P  A +
Sbjct: 381 HMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATW 440

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G LL AC+ H   ++ E     L  L P +  G +V L+NI+A+   W+DV  +R  MK+
Sbjct: 441 GALLGACKKHGDTEMGERVGRKLIELQP-DHDGFHVLLSNIFASKGDWEDVLEVRGMMKQ 499

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             VVK PG S IE   VVHEF +GD+ HP +  +   L E+ KR+K+ GY PD       
Sbjct: 500 QGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLD 559

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           + EE KE  L  HSEKLAIAFGL+ +   TPIR+ KNLR+C DCH A K IS    REI+
Sbjct: 560 IDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIV 619

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD  RFH+FK+G CSC DYW
Sbjct: 620 VRDRHRFHYFKEGACSCMDYW 640



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 36/209 (17%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +D + ++FD +   N   WN M+  Y++++ AE  L L ++M+   + P+  +   V
Sbjct: 76  FIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLV 135

Query: 205 LLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------------ 251
           +  C+ +  L+ G K++H  V K     D      LI+MY  CG++ D            
Sbjct: 136 VQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLD 194

Query: 252 ----------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                                 A KLF E+  KD+V+W+A+ISGY Q+G  E+AL +F +
Sbjct: 195 SVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 254

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLG 318
           M   GM+ D +  V++L AC H  +V  G
Sbjct: 255 MNANGMRLDEVVVVSVLSACAHLSIVKTG 283



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 18/302 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTASWNTMIS 78
           G ++DA++LFD+ P  D VS+N +L+  +   D   V+ A+  F  +  KD  SW+ +IS
Sbjct: 178 GNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALIS 237

Query: 79  GFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLD-----KAVE--LFKVAPVK 130
           G+ Q     +A  +F+ M      +    ++S    C  L      K +   + ++    
Sbjct: 238 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 297

Query: 131 SVVAWTAMI----SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            V    A+I      YMK G V+ A ++F+ M  K + +WNA+I G   N   E  L + 
Sbjct: 298 YVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMF 357

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCK 245
             M   G+ PN  +   VL  C H+  +  G+     ++ K  +  +      ++ +  +
Sbjct: 358 SEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGR 417

Query: 246 CGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            G L +A KL   +    DV TW A++    +HG  E   R+  K+ +  ++PD   F  
Sbjct: 418 AGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHV 475

Query: 305 LL 306
           LL
Sbjct: 476 LL 477


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 325/553 (58%), Gaps = 40/553 (7%)

Query: 27  QELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-------FQRLPIKDTASWNTMISG 79
           + LF  IP+PD   ++ +++        + + F F       ++R+ + + +S N   S 
Sbjct: 72  RRLFFSIPKPDTFLFHSLIT--------LTSKFSFPQESLLCYRRMLLANISSSNYTFSA 123

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
            ++      + DL  A     ++     I GY     LD  V+              A++
Sbjct: 124 VIKS-----SADL-TAFSIGETIHCHVYICGY----GLDAYVQ-------------AALV 160

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           S Y K G V +A K+FD+MP K +V WN+MI+GY +N + ++ ++L  +M  LG++P++S
Sbjct: 161 SFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSS 220

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +  S+L  C+ + ++ LG  VH+ + ++    +    T L++MY +CG++  A ++F  +
Sbjct: 221 TFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSM 280

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           + K++V W AMISGY  HG G +A+ LF++M  +G +P+++TFVA+L AC HAGLVD G 
Sbjct: 281 EEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGR 340

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACR 378
           Q F +M  +YG+    +H  CMVD+LGRAG L EA   IK   P +P PA++  +L AC+
Sbjct: 341 QIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACK 400

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +HK  DL    A +L ++ P N  G YV L+NIYA   + D V +IR  M  N + K  G
Sbjct: 401 MHKNFDLGVEVAEHLLSIEPEN-PGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVG 459

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
           YS I+V   V+ F  GD+ HP+   I+  L EL  R + AGY+P  E  +H V EE +E 
Sbjct: 460 YSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREY 519

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
            L +HSEKLAIAFGL+K   G  IR+ KNLR+C DCH A KYIS I  REI VRD  RFH
Sbjct: 520 ALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFH 579

Query: 559 HFKDGTCSCGDYW 571
           HFKDG+CSC DYW
Sbjct: 580 HFKDGSCSCQDYW 592



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            Y     +    +LF  +P  +   ++++I    + S+ ++ L   R M+   I  +  +
Sbjct: 61  AYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYT 120

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
            S+V+   + L++  +G+ +H  V+      D      L+S Y K G +  A K+F ++ 
Sbjct: 121 FSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMP 180

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI- 319
            K VV WN+MISGY Q+G G++A+ LF  M+D G+KPDS TFV+LL AC   G + LG  
Sbjct: 181 EKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFW 240

Query: 320 ----------------------------------QYFDSMVNDYGIAAKPDHYTCMVDLL 345
                                             + FDSM     +A     +T M+   
Sbjct: 241 VHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVA-----WTAMISGY 295

Query: 346 GRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 377
           G  G   +A++L  +M F   +P    F  +LSAC
Sbjct: 296 GMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 121/288 (42%), Gaps = 61/288 (21%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
            + L  F  + G +  A+++FDK+P+  VV++N M+S    N    + V  F   Q L +
Sbjct: 156 QAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGV 215

Query: 68  K-DTASWNTMISGFVQKKNMAK--------ARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           K D++++ +++S   Q   +          AR+ F    + N V  +A+++ Y  CG + 
Sbjct: 216 KPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCF----DLNVVLGTALMNMYSRCGNVS 271

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           KA E+F     K++VAWTAMISGY   G    A +LF+EM                    
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFD----------------- 314

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
                         G RPN  +  +VL  C+H   +  G+Q+   +      K    L P
Sbjct: 315 --------------GPRPNNVTFVAVLSACAHAGLVDEGRQIFTTM------KQEYGLVP 354

Query: 239 -------LISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQH 277
                  ++ M  + G L +A +       K+     W AM+     H
Sbjct: 355 SVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMH 402



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 20/173 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLS-CILLNSDDV 55
           M  KT V WNS+++G+ +Q G  K+A ELF    D   +PD  ++  +LS C  + +  +
Sbjct: 179 MPEKTVVAWNSMISGY-EQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGL 237

Query: 56  ------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
                   A + F    +  TA  N     + +  N++KAR++F +M EKN V+W+AMIS
Sbjct: 238 GFWVHEYIARNCFDLNVVLGTALMNM----YSRCGNVSKAREVFDSMEEKNIVAWTAMIS 293

Query: 110 GYIECGQLDKAVELFKV----APVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           GY   G   +A+ELF       P  + V + A++S     G VD   ++F  M
Sbjct: 294 GYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTM 346


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/542 (40%), Positives = 311/542 (57%), Gaps = 57/542 (10%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVE 122
           +  A WN MI+G+V+ +   +A +LF+ M        NSV+ S+++   + C        
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESF----- 406

Query: 123 LFKVAPVKSVVAW---------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           L K      VV W          A++  Y + G++++A  +F  M  K++V+WN MI GY
Sbjct: 407 LDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGY 466

Query: 174 VENSWAEDGLKLLRMMI------------------GLGIRPNASSLSSVLLGCSHLSSLQ 215
           V     +D L LL  M                      ++PN+ +L +VL GC+ L++L 
Sbjct: 467 VVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALG 526

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            GK++H    K  L KD    + L+ MY KCG L  +  +F ++  ++V+TWN +I  Y 
Sbjct: 527 KGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYG 586

Query: 276 QHGKGEKALRLFDKMKDEG-----MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
            HGKGE+AL+LF +M +EG     ++P+ +T++A+  + +H+G+VD G+  F +M   +G
Sbjct: 587 MHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHG 646

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLDLAEFA 389
           I    DHY C+VDLLGR+G++ EA +LIK MP   +    + +LL AC++H+ L++ E A
Sbjct: 647 IEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIA 706

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
           A NLF L+P           N+     K   + R    MKE  V K PG SWIE G  VH
Sbjct: 707 AKNLFVLDP-----------NVLDYGTKQSMLGR---KMKEKGVRKEPGCSWIEHGDEVH 752

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           +F +GD  HP+   +HE L+ L  RMK  GYVPD    LH VGEE KE +L  HSE+LAI
Sbjct: 753 KFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAI 812

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFGL+    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFHHF++GTCSCGD
Sbjct: 813 AFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGD 872

Query: 570 YW 571
           YW
Sbjct: 873 YW 874



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 165/347 (47%), Gaps = 45/347 (12%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           F F Q LP   TA  N++++ + +  ++  AR +F  +  ++ VSW++MI+      + +
Sbjct: 112 FKFGQALP---TAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWE 168

Query: 119 KAVELFK------VAPV---------------------KSVVAW------------TAMI 139
            AV LF+      V P                      K V A+             A++
Sbjct: 169 LAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALV 228

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           + Y K G+V  A+ LFD    K+LV+WN +I+   +N   E+ L  L +M+  G+RPN  
Sbjct: 229 TMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGV 288

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVF-KSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           +L+SVL  CSHL  L  GK++H  V   + L +++     L+ MYC C   E    +F  
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDG 348

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 317
           + R+ +  WNAMI+GY ++    +A+ LF +M  E G+ P+S+T  ++L AC       L
Sbjct: 349 MFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESF-L 407

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             +   S V  +G          ++D+  R G++  A  +   M  K
Sbjct: 408 DKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRK 454



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 4/210 (1%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            +FK           ++++ Y K G +D A ++FDE+  ++ V+WN+MI         E 
Sbjct: 110 HVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWEL 169

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            + L R+M+   + P + +L SV   CS+L + L LGKQVH  V ++   +  T    L+
Sbjct: 170 AVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTN-NALV 228

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY K G + +A  LF     KD+V+WN +IS  +Q+ + E+AL     M   G++P+ +
Sbjct: 229 TMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGV 288

Query: 301 TFVALLLACNHAGLVDLG--IQYFDSMVND 328
           T  ++L AC+H  ++  G  I  F  M ND
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFVLMNND 318



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G+ P+  +  +VL   + +  L LGKQ+H  VFK      T     L++MY KCGD
Sbjct: 76  MVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGD 135

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ A ++F EI  +D V+WN+MI+   +  + E A+ LF  M  E + P S T V++  A
Sbjct: 136 IDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHA 195

Query: 309 CNH 311
           C++
Sbjct: 196 CSN 198



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 137/349 (39%), Gaps = 78/349 (22%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T   WN+++AG+ +     +  +   + + +  +   ++ LS +L      V    F  
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVL---PACVRCESFLD 408

Query: 64  RLPI----------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           +  I          KD    N ++  + +   +  AR +F +M  K+ VSW+ MI+GY+ 
Sbjct: 409 KEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVV 468

Query: 114 CGQLDKAVELF---------------------KVAPVK--SVVAWTA------------- 137
           CG+ D A+ L                      K  P+K  SV   T              
Sbjct: 469 CGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKG 528

Query: 138 ----------MISGYMKFGK--VDLAEK---------LFDEMPTKNLVTWNAMIAGYVEN 176
                     M+S  +  G   VD+  K         +F++M  +N++TWN +I  Y  +
Sbjct: 529 KEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMH 588

Query: 177 SWAEDGLKLLRMMIGLG-----IRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLC 230
              E+ LKL R M+  G     IRPN  +  ++    SH   +  G  + + +  K  + 
Sbjct: 589 GKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIE 648

Query: 231 KDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQH 277
             +     L+ +  + G +E+A  L   +    K V  W++++     H
Sbjct: 649 PTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIH 697


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1111

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/477 (42%), Positives = 296/477 (62%), Gaps = 6/477 (1%)

Query: 100  NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
            N V++ +MIS  +  G  ++ V +     K   ++ V    A+++ Y K G +  + KLF
Sbjct: 636  NEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLF 695

Query: 156  DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
            +++  KNLV+WN MI  +++N  AE+GL    M   +G++P+ ++  +VL  C  +  ++
Sbjct: 696  EDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVR 755

Query: 216  LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            L + +H L+       +T   T L+ +Y K G LED+  +FLEI   D + W AM++ YA
Sbjct: 756  LSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYA 815

Query: 276  QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
             HG G  A++ F+ M   G+ PD +TF  LL AC+H+GLV+ G  YF++M   Y I  + 
Sbjct: 816  THGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRL 875

Query: 336  DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            DHY+CMVDL+GR+G L +A  LIK+MP +P   ++G LL ACRV+K   L   AA  LF 
Sbjct: 876  DHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFE 935

Query: 396  LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
            L P +    Y+ L+NIY+A   W D +RIR  MK+  +V+  GYS+IE G  +H+F  GD
Sbjct: 936  LEPRDGRN-YIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGD 994

Query: 456  RVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
              HPE   I +KLKE+ K+MK   G+    EF LH V E+VKE+++  HSEK+A+AFGL+
Sbjct: 995  WSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLL 1054

Query: 515  KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             +    PI + KNLR+CGDCH   K IS IEKR II+RD+ RFHHF +G+CSC DYW
Sbjct: 1055 VISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/551 (38%), Positives = 315/551 (57%), Gaps = 12/551 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA--SWNTMISGF 80
           L  A ++ D+  +P + + N M+      S     +FDF+ R+          N  ++  
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRA-HCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFL 122

Query: 81  VQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           VQ       R+  L +         + +    + +IS Y E G LD   ++F        
Sbjct: 123 VQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDF 182

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V  TAM++   + G V  A KLF+ MP K+ + WNAMI+GY +   + + L L  +M   
Sbjct: 183 VCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLE 242

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G++ N  S+ SVL  C+ L +L  G+  H  + ++ +       T L+ +Y KCGD++ A
Sbjct: 243 GVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKA 302

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F  ++ K+V TW++ ++G A +G GEK L+LF  MK +G+ P+++TFV++L  C+  
Sbjct: 303 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVV 362

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           G VD G ++FDSM N++GI  + DHY C+VDL  RAG+L +AV +I++MP K   A++ +
Sbjct: 363 GFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSS 422

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL A R++K L+L   A+  +  L  +N  G YV L+NIYA    WD+V+ +R SMK   
Sbjct: 423 LLHASRMYKNLELGVLASKKMLELETSN-HGAYVLLSNIYADSDDWDNVSHVRQSMKSKG 481

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K PG S +EV   VHEF  GD+ HP+   I    K++ +R++LAGY  D    +  + 
Sbjct: 482 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDID 541

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE KE  L  HSEK AIAFG++ +    PIR+ KNLRVCGDCH+ +  IS I  REIIVR
Sbjct: 542 EEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 601

Query: 553 DTTRFHHFKDG 563
           D  RFHHFKDG
Sbjct: 602 DRNRFHHFKDG 612



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 5/217 (2%)

Query: 185 LLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           L RMM   +G RPN  +  S++  C H  + + G  +H LV KS + ++   +  L+++Y
Sbjct: 623 LSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLY 682

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            K GDL  +CKLF ++  K++V+WN MI  + Q+G  E+ L  F+  +  G+KPD  TF+
Sbjct: 683 GKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFL 742

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           A+L  C   G+V L  Q    ++   G  A     T ++DL  + G+L ++  +  ++  
Sbjct: 743 AVLRVCEDIGVVRLS-QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT- 800

Query: 364 KPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
            P    +  +L+A   H   R  +  F  M  + L+P
Sbjct: 801 SPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSP 837



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 23/267 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L    ++F+ +  PD V    M++       DV  A   F+ +P KD  +WN MISG+
Sbjct: 165 GCLDSCHKVFNSVSYPDFVCRTAMVTACA-RCGDVAFARKLFEGMPEKDPIAWNAMISGY 223

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK---AVELFKVAPVK-SV 132
            Q     +A +LF  M     + N VS  +++S   + G LD+   A    +   +K +V
Sbjct: 224 AQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITV 283

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              T ++  Y K G +D A ++F  M  KN+ TW++ + G   N + E  LKL  +M   
Sbjct: 284 RLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQD 343

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCK 245
           G+ PNA +  SVL GCS +  +  G    Q  F S   ++   + P       L+ +Y +
Sbjct: 344 GVTPNAVTFVSVLRGCSVVGFVDEG----QKHFDS--MRNEFGIEPQLDHYGCLVDLYAR 397

Query: 246 CGDLEDACKLFLEIQRK-DVVTWNAMI 271
            G LEDA  +  ++  K     W++++
Sbjct: 398 AGRLEDAVSIIQQMPMKAHAAVWSSLL 424



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 20/233 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNS-DD 54
           M  K  + WN++++G+A Q G+ ++A  LF     + +    V   +++ +C  L + D 
Sbjct: 208 MPEKDPIAWNAMISGYA-QVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQ 266

Query: 55  VVAAFDFFQRLPIKDTASW-NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A  + +R  IK T     T++  + +  +M KA ++F  M EKN  +WS+ ++G   
Sbjct: 267 GRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAM 326

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTK-----NLV 164
            G  +K ++LF +     V    V + +++ G    G VD  +K FD M  +      L 
Sbjct: 327 NGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLD 386

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
            +  ++  Y      ED + +++ M    ++ +A+  SS+L       +L+LG
Sbjct: 387 HYGCLVDLYARAGRLEDAVSIIQQM---PMKAHAAVWSSLLHASRMYKNLELG 436


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/509 (40%), Positives = 299/509 (58%), Gaps = 34/509 (6%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
            TV+W ++L GFA+  GK+ +A+ LFD++P  +VV++N M++  + N   V  A   F  
Sbjct: 232 NTVSWVTMLCGFAR-FGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCH-VDEAISLFME 289

Query: 65  LPIKDTASWNT-------------------------------MISGFVQKKNMAKARDLF 93
           +P K++ SW T                               MISG+VQ K M  AR +F
Sbjct: 290 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIF 349

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             +  ++ V W+ MI+GY +CG++D+A+ LFK    K +V+W  M++ Y + G++D A K
Sbjct: 350 NQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIK 409

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F+EM  KN+V+WN++I+G  +N    D LK   +M   G +P+ S+ +  L  C+HL++
Sbjct: 410 IFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAA 469

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           LQ+GKQ+HQLV KS    D      LI+MY KCG +  A  LF +I   DVV+WN++I+ 
Sbjct: 470 LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAA 529

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           YA +G G +AL+LF KM+ EG+ PD +TFV +L AC+H GL+D G++ F  MV  Y I  
Sbjct: 530 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 589

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
             +HY CMVDLLGRAG+L EA  L++ M       I+G LL ACR+H  L+LA+FAA  L
Sbjct: 590 LAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKL 649

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
               P   +  YV L+N+ A   +WD+VAR+R  MKE    K PG+SWIE+   VH F S
Sbjct: 650 LEFEPHKTSN-YVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLS 708

Query: 454 GDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            D  HP  V +   L+ L   M+     P
Sbjct: 709 EDPAHPRAVELCHILRSLTAHMRNTAKCP 737



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 213/411 (51%), Gaps = 52/411 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--- 57
           M  +  V+WNS++A +     ++++A++LFDK+P  D+ S+ +M++C   N +   A   
Sbjct: 72  MPQRNIVSWNSMIAAYL-HNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNL 130

Query: 58  ------------------------AFD----FFQRLPIKDTASWNTMISGFVQKKNMAKA 89
                                    FD     F  +P KD  SWN+M++G+ +   M   
Sbjct: 131 FNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLG 190

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
              F  M E++ VSW+ M+ G++E G L+ + E F+  P  + V+W  M+ G+ +FGK+ 
Sbjct: 191 LQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIA 250

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A +LFD+MP +N+V WNAMIA YV+N   ++ + L   M       N+ S ++V+ G  
Sbjct: 251 EARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM----PEKNSISWTTVINGYV 306

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            +  L    +  QL+ + P  ++  A T +IS Y +   ++DA ++F +I  +DVV WN 
Sbjct: 307 RMGKLD---EARQLLNQMPY-RNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNT 362

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           MI+GY+Q G+ ++AL LF +M    +K D +++  ++ +    G +D  I+ F+ M    
Sbjct: 363 MIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKN 418

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVD---LIKKMPFKPQPAIFGTLLSAC 377
            ++     +  ++  L + G  ++A+    L+     KP  + F   LS+C
Sbjct: 419 IVS-----WNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSC 464



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 191/384 (49%), Gaps = 23/384 (5%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           S  +  A   FQ +  K+T + N+MIS F +   ++ AR LF  MP++N VSW++MI+ Y
Sbjct: 28  SGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAY 87

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMI 170
           +   ++++A +LF   P + + +WT MI+ Y + G++  A  LF+ +P K N V  NAM+
Sbjct: 88  LHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMV 147

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           AGY +N   ++  +L   M       +  S +S+L G +    ++LG Q     F+    
Sbjct: 148 AGYAKNRQFDEARRLFDAMPA----KDLVSWNSMLTGYTRNGEMRLGLQ----FFEEMAE 199

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D  +   ++  + + GDL  + + F +I   + V+W  M+ G+A+ GK  +A RLFD+M
Sbjct: 200 RDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQM 259

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
               +   +    A +  C+    VD  I  F  M     I+     +T +++   R GK
Sbjct: 260 PIRNVVAWNAMIAAYVQNCH----VDEAISLFMEMPEKNSIS-----WTTVINGYVRMGK 310

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA  L+ +MP++   A    ++S    +KR+D     A  +FN        C+  +  
Sbjct: 311 LDEARQLLNQMPYR-NVAAQTAMISGYVQNKRMD----DARQIFNQISIRDVVCWNTMIA 365

Query: 411 IYAAMKKWDDVARIRLSMKENNVV 434
            Y+   + D+   +   M + ++V
Sbjct: 366 GYSQCGRMDEALHLFKQMVKKDIV 389


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 330/561 (58%), Gaps = 14/561 (2%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           +G++  A  +   I + D+V  N +L+ +      +  A   F+++P +D  +W T+ISG
Sbjct: 78  QGRIVHAH-ILQSIFRHDIVMGNTLLN-MYAKCGSLEEARKVFEKMPQRDFVTWTTLISG 135

Query: 80  FVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIE-----CGQLDKAVELFKVAPVK 130
           + Q      A   F  M       N  + S++I          CG         K     
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF-CVKCGFDS 194

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V   +A++  Y ++G +D A+ +FD + ++N V+WNA+IAG+   S  E  L+L + M+
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G RP+  S +S+   CS    L+ GK VH  + KS       A   L+ MY K G + 
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           DA K+F  + ++DVV+WN++++ YAQHG G++A+  F++M+  G++P+ I+F+++L AC+
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GL+D G  Y++ M  D GI  +  HY  +VDLLGRAG L  A+  I++MP +P  AI+
Sbjct: 375 HSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
             LL+ACR+HK  +L  +AA ++F L+P +  G +V L NIYA+  +W+D AR+R  MKE
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKE 492

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
           + V K P  SW+E+   +H F + D  HP+   I  K +E+  ++K  GYVPD    +  
Sbjct: 493 SGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVH 552

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V ++ +E  L +HSEK+A+AF L+  P G+ I + KN+RVCGDCH A K  S +  REII
Sbjct: 553 VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRDT RFHHFKDG CSC DYW
Sbjct: 613 VRDTNRFHHFKDGNCSCKDYW 633



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 43/271 (15%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +++L  C+    L  G+ VH  + +S    D      L++MY KCG LE+A K+F ++ +
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--------CNH-- 311
           +D VTW  +ISGY+QH +   AL  F++M   G  P+  T  +++ A        C H  
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 312 ----------------AGLVDLGIQY---------FDSMVNDYGIAAKPDHYTCMVDLLG 346
                           + L+DL  +Y         FD++ +   ++     +  ++    
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHA 238

Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           R     +A++L + M    F+P    + +L  AC     L+  ++    +        A 
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
               L ++YA      D  +I   + + +VV
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 329



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 149/330 (45%), Gaps = 36/330 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIML----SCILLNS 52
           +  +  V+WN+++AG A++ G  K A ELF  +     +P   SY  +     S   L  
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEK-ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQ 280

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V A+       +   A  NT++  + +  ++  AR +F  + +++ VSW+++++ Y 
Sbjct: 281 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339

Query: 113 ECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV--TW 166
           + G   +AV    E+ +V    + +++ ++++     G +D     ++ M    +V   W
Sbjct: 340 QHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAW 399

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           + +    +    A D  + LR +  + I P A+   ++L  C    + +LG    + VF+
Sbjct: 400 HYVTVVDLLGR-AGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFE 458

Query: 227 -SPLCKDTTALTPLISMYCKCGDLEDACKLFLE-----IQRKDVVTW----NAM---ISG 273
             P   D      L ++Y   G   DA ++  +     ++++   +W    NA+   ++ 
Sbjct: 459 LDP--DDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAN 516

Query: 274 YAQHGKGEKALRLFD----KMKDEGMKPDS 299
             +H + E+  R ++    K+K+ G  PD+
Sbjct: 517 DERHPQREEIARKWEEVLAKIKELGYVPDT 546


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 341/619 (55%), Gaps = 52/619 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSC-----ILLN 51
           ++ K  + WNS++AGF  Q G   +A + F    D   +PD VS   +L+       LLN
Sbjct: 173 LDEKDNITWNSMIAGFT-QNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLN 231

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
             ++ A     +     +    NT+I  + +   +A A  +F  M  K+ +SW+ +I+ Y
Sbjct: 232 GKEIHAYA--MKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAY 289

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISG------------------------------ 141
            +     +A++L +    K +   T MI                                
Sbjct: 290 AQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLM 349

Query: 142 --------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
                   Y   G ++ A ++F+ +  K++V+W +MI+ YV N  A + L +  +M    
Sbjct: 350 MQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETS 409

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P++ +L S+L   + LS+L  GK++H  +F+     + + +  L+ MY  CG LE+A 
Sbjct: 410 VEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAY 469

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K+F+  + K +V W  MI+ Y  HG+G+ A+ LF  M+D+ + PD ITF+ALL AC+H+G
Sbjct: 470 KVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSG 529

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L++ G +  ++M   Y +   P+HY C+VDLLGRA  L EA   +K M  +P   ++   
Sbjct: 530 LINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAF 589

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACR+H    L E AA  L +L+P ++ G YV ++N++AA  +W DV  +R+ MK   +
Sbjct: 590 LGACRIHSNKKLGEIAAQKLLDLDP-DSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGL 648

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL-EKRMKLAGYVPDLEFALHAVG 492
            K PG SWIEVG  VH F   D+ HPE   I++KL ++ EK  K  GYVP  +  LH VG
Sbjct: 649 KKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVG 708

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           +E K Q+L  HSE+LAIA+GL+    GTPIR+ KNLRVC DCH   K +S   +RE+IVR
Sbjct: 709 KEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVR 768

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D +RFHHF+DG CSCGD+W
Sbjct: 769 DASRFHHFEDGVCSCGDFW 787



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 141/277 (50%), Gaps = 40/277 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELFK------- 125
           N+++S + +  ++  AR LF  M E+N V SW+++IS Y   GQ  +A+ LF+       
Sbjct: 49  NSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGV 108

Query: 126 -------VAPVKS-------------------------VVAWTAMISGYMKFGKVDLAEK 153
                  VA +++                         V    A+++ +++FGK+  A +
Sbjct: 109 GANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAAR 168

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +FDE+  K+ +TWN+MIAG+ +N    + L+    +    ++P+  SL S+L     L  
Sbjct: 169 IFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGY 228

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L  GK++H    K+ L  +      LI MY KC  +  A  +F ++  KD+++W  +I+ 
Sbjct: 229 LLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAA 288

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           YAQ+    +AL+L  K++ +GM  D++   + LLAC+
Sbjct: 289 YAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 1/183 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-LVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           V    +++S Y K   +  A KLFD M  +N +V+WN++I+ Y  N    + L L R M 
Sbjct: 45  VFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQ 104

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G+  N  +L + L  C   S  +LG ++H  + KS    D      L++M+ + G + 
Sbjct: 105 KAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMS 164

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A ++F E+  KD +TWN+MI+G+ Q+G   +AL+ F  ++D  +KPD ++ +++L A  
Sbjct: 165 YAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASG 224

Query: 311 HAG 313
             G
Sbjct: 225 RLG 227



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
           LG+  ++ +   VL  C  +  +  G ++H L+ K            L+SMY KC D+  
Sbjct: 4   LGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILG 63

Query: 252 ACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           A KLF  + +R DVV+WN++IS Y+ +G+  +AL LF +M+  G+  ++ T VA L AC 
Sbjct: 64  ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACE 123

Query: 311 HAGLVDLGIQ 320
            +    LG++
Sbjct: 124 DSSFKKLGME 133


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/639 (34%), Positives = 349/639 (54%), Gaps = 79/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           N++L  + K  G L  A+ LF ++   D VS+N+M++    N  +++ +  F   Q L  
Sbjct: 179 NTLLDSYFKT-GGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGF 237

Query: 68  K----------------DTASWNTMISGFVQKKNMAK--------------------ARD 91
           K                D  ++   I GFV K +  +                     R 
Sbjct: 238 KPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRK 297

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----------KVAPVKSVVAWTA---- 137
           LF  MPE + VS++ +I+ Y   G++ ++++LF          K  P  ++++  A    
Sbjct: 298 LFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLD 357

Query: 138 -------------------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
                                    ++  Y K GK + A+++F  + +++ V W AMI+ 
Sbjct: 358 LQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISA 417

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+    E+GLKL   M    +  + ++ + VL   ++L+S+ LGKQ+H  V +S    +
Sbjct: 418 NVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGFM-N 476

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             +   L+ MY  C  ++DA K F E+  ++VVTWNA++S YAQ+G G+  L+ F++M  
Sbjct: 477 VYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIM 536

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G +PDS++F+ +L AC+H  LV+ G++YF+ M   Y +A K +HYT MVD L R+G+  
Sbjct: 537 SGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFD 596

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA  L+ +MPF+P   ++ ++L++CR+HK   LA  AA  LFN+     A  YV ++NI+
Sbjct: 597 EAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIF 656

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A   +WD V +++ +M++  V K+P YSW+E+   VH F + D  HP+ + I  K++ L 
Sbjct: 657 AEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLA 716

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           ++M+  GY PD+  A   V +E K   L +HSE+LAIAF LI  P G+PI V KNLR C 
Sbjct: 717 EQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACT 776

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K IS I  REI VRD+ RFHHF+DG+CSCGDYW
Sbjct: 777 DCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 20/349 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           +RG+L  A++L D++P  +  S +I++S   + S ++  A   F     +   +W TMI 
Sbjct: 55  ERGQLCQARQLLDQMPNRNSFSIDIIISG-YVKSGNLTVARRIFDDTDERTVVAWTTMIG 113

Query: 79  GFVQKKNMAKARDLFLAMPEKNS----VSWSAMISGYIECGQLDKAVELF-------KVA 127
            + +      A  LF  M    S    V++  +++G   C  L+ A EL+       K+ 
Sbjct: 114 AYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG---CNDLEVAKELYQAHAQIVKLG 170

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
              +      ++  Y K G +D A +LF EM   + V++N MI GY  N   E+ ++L  
Sbjct: 171 HHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFV 230

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M  LG +P+  + ++V+     L     G+Q+H  V K+   ++       +  Y K  
Sbjct: 231 EMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHD 290

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            + +  KLF E+   D V++N +I+ YA  GK ++++ LF +++       +  F  +L 
Sbjct: 291 CVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLS 350

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEA 354
               +  + +G Q    +V      A PD      +VD+  + GK  EA
Sbjct: 351 IAASSLDLQMGRQLHAQVVVS---MADPDFRVSNSLVDMYAKCGKFEEA 396



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 113/239 (47%), Gaps = 31/239 (12%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T+ +N MI    ++  + +AR L   MP +NS S   +ISGY++ G L  A  +F     
Sbjct: 43  TSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDE 102

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           ++VVAWT MI  Y K  +   A KLF EM                               
Sbjct: 103 RTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRS---------------------------- 134

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
              G +P+  +  ++L GC+ L   +   Q H  + K     +      L+  Y K G L
Sbjct: 135 ---GSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGL 191

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + A +LFLE+   D V++N MI+GYA +G  E+A+ LF +M++ G KP   TF A++ A
Sbjct: 192 DSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISA 250


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/501 (41%), Positives = 297/501 (59%), Gaps = 7/501 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  +     +  AR +F  M  +++VS+++MI  +   G +  A  LF+  P  + V
Sbjct: 48  NALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGDVVSARRLFERVPSPTPV 107

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            WT+M++G  + G V  A +LF+EMP ++LV+WNAM++G   N    + L L R M+  G
Sbjct: 108 TWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEG 167

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK--DTTALTPLISMYCKCGDLED 251
             PN  ++ S L  C+   +L+ GK +H  V +  L +  D    T L+ MY KCG +E 
Sbjct: 168 FAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVEL 227

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACN 310
           A  +F +++ ++  TWNAMI+G A +G   KAL +F KM+ D  + PD +TFV +LLAC+
Sbjct: 228 ALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACS 287

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H G VD+G ++F  +   YGI    +HY CMVDLL R+G L EA  +I  MP KP   ++
Sbjct: 288 HGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVW 347

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
             LL  CR+HK + +AE A   +     A  +G +V L+N+YAA+ +W  V  +R +M+ 
Sbjct: 348 RALLGGCRLHKDVKMAETAISEM----EATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRS 403

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             + K+PG S IE+   +HEF SGD+ HP    IH KL E+  RM+  GYV +     + 
Sbjct: 404 KGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQQGYVTETAEVFYD 463

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V EE KEQ L  HSEKLAIAFGLI  P    IR+ KNLR C DCH+  K +S I   EI+
Sbjct: 464 VEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKFAKLVSQIYHWEIV 523

Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
           VRD  RFHHF +G CSC D+W
Sbjct: 524 VRDRARFHHFTEGACSCNDFW 544



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ + TV++NS++   A   G +  A+ LF+++P P  V++  M++  L  + DV AA  
Sbjct: 70  MSHRDTVSFNSMIHAHAMS-GDVVSARRLFERVPSPTPVTWTSMVAG-LCRAGDVAAARR 127

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIEC 114
            F+ +P++D  SWN M+SG    +   +A  LF  M      P + +V  +         
Sbjct: 128 LFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGA 187

Query: 115 GQLDKAVELFKVAPVKSVVAW------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            +  K +  F     K +  W      TA++  Y K G V+LA  +F ++ ++N  TWNA
Sbjct: 188 LETGKWIHAF--VERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNA 245

Query: 169 MIAGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFK 226
           MI G   N ++   L + R M +   + P+  +   VLL CSH   + +G++  H +  K
Sbjct: 246 MINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKK 305

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
             +         ++ +  + G L++A K+   +  K D V W A++ G   H
Sbjct: 306 YGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLH 357



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 11/157 (7%)

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H L+ K  L         LI  Y   G ++DA ++F  +  +D V++N+MI  +A  G 
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHY 338
              A RLF+++      P  +T+ +++     AG V    + F+ M V D         +
Sbjct: 91  VVSARRLFERVP----SPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDL------VSW 140

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             M+  L    + VEA+ L ++M  +      GT+LS
Sbjct: 141 NAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLS 177


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/580 (38%), Positives = 330/580 (56%), Gaps = 25/580 (4%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N  ++++ +AK R  L DA  LFD+ P+ D+  Y+ +L+ +  ++   +A       LPI
Sbjct: 40  NPAALVSAYAKSR-LLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELA-------LPI 91

Query: 68  -----------KDTASWNTMISGFVQKKNMAKARDL---FLAMP-EKNSVSWSAMISGYI 112
                       D    +++ S F + ++    R L   F+  P   + V  S+++  Y 
Sbjct: 92  LRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYC 151

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           +CG  D   ++F     K+ V WTA++SGY   G+ + A +LF  MP +NL  W A+I+G
Sbjct: 152 KCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISG 211

Query: 173 YVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            V    +   ++L   M   G+R  +A  LS V+ G + L++  LG+Q+H    +     
Sbjct: 212 LVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLS 271

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           +      LI MY KC D+  A ++F  I  +DV++W  M+ G AQHG+ E+AL L+D+M 
Sbjct: 272 NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMV 331

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G KP+ +TFV L+ AC+HAGLV  G Q F+SM N+YGI  +  HYTC +DLL R+G L
Sbjct: 332 LAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHL 391

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           +EA +L+  MP++P  A +G LLSAC  +K  ++    +  L  L P +++  Y+ L+N+
Sbjct: 392 LEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSS-TYILLSNV 450

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA   KWD VA++R  M    + K PGYSWIE G     F +G+        I   L+E+
Sbjct: 451 YAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEM 510

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
              M+  GYVPD    +H + E  KE  L  HSE+LA+AFGLIK P G+ IRV KNLRVC
Sbjct: 511 VLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVC 570

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH   K IS I  R+I+VRD++RFHHF+ G CSC ++W
Sbjct: 571 VDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 59/323 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K +V W ++++G+A   G+ ++A +LF  +P  ++ ++  ++S  L+N+ + V A +
Sbjct: 166 MSAKNSVVWTALVSGYASN-GRSEEALQLFRSMPGRNLFAWTALISG-LVNTGESVGAVE 223

Query: 61  FFQRL-----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGY 111
            F  +      I D    + +I G          R L  +        N +  +A+I  Y
Sbjct: 224 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 283

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            +C  +  A E+F+    + V++WT M+ G  + G+                        
Sbjct: 284 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR------------------------ 319

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
                  AE+ L L   M+  G +PN  +   ++  CSH   +Q G+Q    +F+S   K
Sbjct: 320 -------AEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQ----LFES--MK 366

Query: 232 DTTALTPLISMYC-------KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKA 283
           +   +TP +  Y        + G L +A +L   +  + D  TW A++S   ++   E  
Sbjct: 367 NEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMC 426

Query: 284 LRLFDKMKDEGMKP-DSITFVAL 305
           +R+ DK+ +  ++P DS T++ L
Sbjct: 427 IRISDKLLE--LRPKDSSTYILL 447


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/540 (40%), Positives = 317/540 (58%), Gaps = 17/540 (3%)

Query: 44  MLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS 103
           ++SC  LN      A   F  +P KD+ SWN+++SGF +  ++     +F  M  + +  
Sbjct: 92  LVSC-YLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGDLGNCLRVFYTMRYEMAFE 150

Query: 104 WS-----AMISGYIECGQLDK-------AVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           W+     ++IS        D+       AV+L     VK V    A I+ Y KFG VD A
Sbjct: 151 WNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVV---NAFINMYGKFGCVDSA 207

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            KLF  +P +N+V+WN+M+A + +N    + +    MM   G+ P+ +++ S+L  C  L
Sbjct: 208 FKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKL 267

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
              +L + +H ++F   L ++ T  T L+++Y K G L  + K+F EI + D V   AM+
Sbjct: 268 PLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAML 327

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           +GYA HG G++A+  F     EGMKPD +TF  LL AC+H+GLV  G  YF  M + Y +
Sbjct: 328 AGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIMSDFYRV 387

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
             + DHY+CMVDLLGR G L +A  LIK MP +P   ++G LL ACRV++ ++L + AA 
Sbjct: 388 QPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGACRVYRNINLGKEAAE 447

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
           NL  LNP++    Y+ L+NIY+A   W D +++R  MK    ++  G S+IE G  +H F
Sbjct: 448 NLIALNPSDPRN-YIMLSNIYSAAGLWSDASKVRALMKTKVFIRNAGCSFIEHGNKIHRF 506

Query: 452 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 511
              D  HP+   IH KL+E+ +++K  G+V + E  LH V EEVK  ++  HSEK+A+AF
Sbjct: 507 VVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEVKTDMINKHSEKIALAF 566

Query: 512 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GL+      P+ + KNLR+C DCH   K++S IEKR II+RD+ RFHHF DG CSC DYW
Sbjct: 567 GLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKRFHHFSDGLCSCADYW 626



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 132/312 (42%), Gaps = 67/312 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN------IMLSCILLNSDD 54
           M  K +++WNS+++GF++  G L +   +F  +       +N      ++ +C    + D
Sbjct: 112 MPHKDSISWNSLVSGFSRI-GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARD 170

Query: 55  V-----VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
                   A      L +K     N  I+ + +   +  A  LF A+PE+N VSW++M++
Sbjct: 171 EGWCLHCCAVKLGMELEVKVV---NAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLA 227

Query: 110 GYIECGQLDKAVELFKVAPV---------------------------------------K 130
            + + G  ++AV  F +  V                                       +
Sbjct: 228 VWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNE 287

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           ++   T +++ Y K G+++++ K+F E+   + V   AM+AGY  +   ++ ++  +  +
Sbjct: 288 NITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTV 347

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC------ 244
             G++P+  + + +L  CSH   +  GK   Q++       D   + P +  Y       
Sbjct: 348 REGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIM------SDFYRVQPQLDHYSCMVDLL 401

Query: 245 -KCGDLEDACKL 255
            +CG L DA +L
Sbjct: 402 GRCGMLNDAYRL 413



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           + +H  V KS   +D      L+S Y   G   DA KLF E+  KD ++WN+++SG+++ 
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 278 GKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLG 318
           G     LR+F  M+ E   + + +T ++++ AC  A   D G
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEG 172


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/648 (37%), Positives = 356/648 (54%), Gaps = 87/648 (13%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF--QRL 65
           ++N++++ +AK+   ++ A +LFD++PQPD VSYN +++       D   AF  F   R 
Sbjct: 76  SFNTLISAYAKE-SYVEVAHQLFDEMPQPDSVSYNTLIAA-YARRGDTQPAFQLFLEMRE 133

Query: 66  PIKDTASW-----------------------------------NTMISGFVQKKNMAKAR 90
              D   +                                   N +I+ + +   + +AR
Sbjct: 134 AFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEAR 193

Query: 91  DLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV-----------AWTA- 137
            +F  + E ++ VSW++M+  Y++  +  KA+EL+    V+ ++           A+T  
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 138 -------------MISGYMK-----FGKVDL----------AEKLFDEMPTKNLVTWNAM 169
                        + SGY +      G +DL            K+FDE+   +LV WN M
Sbjct: 254 QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTM 313

Query: 170 IAGY-VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I+GY +    +++ L+  R +  +G RP+  SL  V+  CS++SS   G+QVH L  K  
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLD 373

Query: 229 LCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
           +  +  ++   LI+MY KCG+L DA  LF  +   + V++N+MI+GYAQHG G ++L LF
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M + G  P +ITF+++L AC H G V+ G  YF+ M   +GI  +  H++CM+DLLGR
Sbjct: 434 QRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AGKL EA  LI+ +PF P    +  LL ACR+H  ++LA  AA  L  L+P NAA  YV 
Sbjct: 494 AGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP-YVM 552

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           LANIY+   +  D A +R  M++  V K PG SWIEV   +H F + D  HP +  I E 
Sbjct: 553 LANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEY 612

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEV---KEQLLL-FHSEKLAIAFGLIKVPLGTPIR 523
           L+E+ +++K  GY P++  AL    + V   +E+L L  HSEKLA++FGL+    G PI 
Sbjct: 613 LEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPIL 672

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VFKNLR+C DCH A KYIS + KREI VRD+ RFH FKDG CSCG YW
Sbjct: 673 VFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +C +L  A  +F      +V ++  +IS Y K   V++A +LFDEMP  + V++N +I
Sbjct: 53  YSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLI 112

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A Y      +   +L   M    +  +  +LS ++  C    ++ L +Q+H L   + L 
Sbjct: 113 AAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLD 170

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +    LI+ Y K G L++A ++F  + + +D V+WN+M+  Y QH +G KAL L+ +
Sbjct: 171 SYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLE 230

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   G+  D  T  ++L A  +   +  G+Q+   ++   G        + ++DL  + G
Sbjct: 231 MTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCG 289

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
             +     +      P   ++ T++S   +++ L
Sbjct: 290 GCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L+ GK +H L  KS +   T      + +Y KC  L  A ++F      +V ++N +IS 
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           YA+    E A +LFD+M     +PDS+++  L+ A    G      Q F  M
Sbjct: 84  YAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFLEM 131



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 25/233 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           + +VN N+++A ++K  G L+DA+ LFD +P+ + VSYN M++    +     +   F +
Sbjct: 378 RISVN-NALIAMYSKC-GNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQR 435

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVS-----WSAMISGYIECG 115
            L +  T +  T IS      +  +  D    F  M +K  +      +S MI      G
Sbjct: 436 MLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAG 495

Query: 116 QLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMIA 171
           +L +A  L +  P       W+A++      G V+LA K  +   ++   N   +  +  
Sbjct: 496 KLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLAN 555

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            Y +N   +D   + ++M   G++           GC   S +++ +++H  V
Sbjct: 556 IYSDNGRLQDAASVRKLMRDRGVKKKP--------GC---SWIEVNRRIHIFV 597


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/513 (38%), Positives = 308/513 (60%), Gaps = 13/513 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D     +++  +V+   + KA+ +      KN  +W+++ISGY   GQ  +AV+L     
Sbjct: 52  DVYVCTSLVDMYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMV 111

Query: 126 ---VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSW 178
              + P   +V W  ++SGY   G++D A  + + +     T N+V+W A+I+G  +N  
Sbjct: 112 EEGITP--DLVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEK 169

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             D LK+   M    ++PN++++ S+L  C+  S L+ G+++H    K     D    T 
Sbjct: 170 YMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATA 229

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI MY + G L+ A  +F +IQ K +  WN M+ GYA H  GE+ + L+DKM++  ++PD
Sbjct: 230 LIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPD 289

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           +ITF ALL AC ++GLVD G +YFDSM  DY I    +HY CMVDLLG++G L EA   I
Sbjct: 290 AITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFI 349

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           + MP KP  +I+G LL++C++HK + LAE AA  LF + P N+A  YV + N+Y+++ +W
Sbjct: 350 ETMPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSAN-YVLMMNLYSSLNRW 408

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
             V R++ SM    +   P +SW +V   +H F +  R HPE   I+ +L +L   ++  
Sbjct: 409 VAVERLKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKL 468

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GY PDL      + +  KE++L+ H+EKLA+ +G++K+  G+PIR+ KN R+C DCH   
Sbjct: 469 GYAPDLNCVCQNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVA 528

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KYIS + KREI++RD  RFHHFK+G C+C D W
Sbjct: 529 KYISLVRKREILLRDGGRFHHFKNGKCACNDRW 561



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 141/298 (47%), Gaps = 19/298 (6%)

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L   R +  LG +P++ S++S L     L   +LGK++H  + +S L  D    T L+ M
Sbjct: 3   LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y K   LE A  +    + K+V  WN++ISGY+  G+  +A++L ++M +EG+ PD +T+
Sbjct: 63  YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 122

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             L+   +  G +D  +   +  +   GI      +T ++    +  K ++A+ +  +M 
Sbjct: 123 NGLVSGYSMQGRIDEALTIINR-IKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181

Query: 363 ---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
               KP      +LL AC     L   E   ++ F++        YV  A I      + 
Sbjct: 182 AENVKPNSTTICSLLCACAGPSLLKKGE--ELHCFSMKLGFVDDIYVATALI----DMYS 235

Query: 420 DVARIRLSMKENNVVK---MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
           +  +++++    N ++   +P ++ + +G  +H          E++ +++K++E   R
Sbjct: 236 EAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGE------EVMILYDKMRERHIR 287


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/613 (35%), Positives = 331/613 (53%), Gaps = 48/613 (7%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFF 62
             V WN +L  +  Q   L  + E+F ++    +        CIL        +   +  
Sbjct: 310 NVVLWNLMLVAYG-QISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQI 368

Query: 63  QRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             L IK+    +  +SG     + +   + KAR +   + +++ VSW++MI+GY++    
Sbjct: 369 HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFC 428

Query: 118 DKAVELFK-------------VAPVKSVVA--------------------------WTAM 138
           ++A+  FK             +A   S  A                          W  +
Sbjct: 429 EEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTL 488

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++ Y + G+ + A  LF E+  K+ +TWN +I+G+ ++   +  L +   M   G + N 
Sbjct: 489 VNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNV 548

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +  S +   ++L+ ++ GKQVH    K+    +T     LIS+Y KCG +EDA  +F E
Sbjct: 549 FTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSE 608

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  ++ V+WN +I+  +QHG+G +AL LFD+MK EG+KP+ +TF+ +L AC+H GLV+ G
Sbjct: 609 MSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEG 668

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
           + YF SM N YG+   PDHY C+VD+LGRAG+L  A   + +MP      I+ TLLSAC+
Sbjct: 669 LSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACK 728

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           VHK +++ E AA +L  L P ++A  YV L+N YA   KW +  ++R  MK+  + K PG
Sbjct: 729 VHKNIEIGELAAKHLLELEPHDSAS-YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPG 787

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SWIEV   VH F  GDR+HP    I++ L EL  R+   GY  +     H   +E K+ 
Sbjct: 788 RSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDP 847

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
               HSEKLA+AFGL+ +P   P+RV KNLRVC DCH   K  S + +REI++RD  RFH
Sbjct: 848 TAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFH 907

Query: 559 HFKDGTCSCGDYW 571
           HF  G+CSCGDYW
Sbjct: 908 HFNSGSCSCGDYW 920



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           D+  A D F      +   WN M+  + Q  ++AK+ ++F  M       N  ++  ++ 
Sbjct: 295 DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILR 354

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISG-----YMKFGKVDLAEKLFDEMPTKNLV 164
                GQ++   ++  ++ +K+       +SG     Y K+G +D A K+ + +  +++V
Sbjct: 355 TCTCTGQIELGEQIHSLS-IKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVV 413

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W +MIAGYV++ + E+ L   + M   G+ P+   L+S    C+ + +++ G Q+H  V
Sbjct: 414 SWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           + S    D +    L+++Y +CG  E+A  LF EI+ KD +TWN +ISG+ Q    ++AL
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQAL 533

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F KM   G K +  TF++ + A  +   +  G Q     V   G  ++ +    ++ L
Sbjct: 534 MVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISL 592

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
            G+ G + +A  +  +M  + + + + T++++C  H R       A++LF+
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGR----GLEALDLFD 638



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 193/414 (46%), Gaps = 52/414 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK------IPQPDVVSYNIMLSCI---LLN 51
           ++ +  V+W ++L+G+A Q G  K+A  L+ +      IP P V+S +++ +C    L  
Sbjct: 104 LSSRDHVSWVAMLSGYA-QSGLGKEAFRLYSQMHWTAVIPTPYVLS-SVLSACTKGKLFA 161

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              ++ A   +++    +T   N +I+ ++   +   A  +F  M   + V+++ +ISG+
Sbjct: 162 QGRMIHA-QVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 112 IECGQLDKAVELFK----------VAPVKSVVAWTAMISG-------------------- 141
            +CG  + A+++F              V S++A  A +                      
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDY 280

Query: 142 ---------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
                    Y+K G ++ A  +F+     N+V WN M+  Y + S      ++   M   
Sbjct: 281 ITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT 340

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI PN  +   +L  C+    ++LG+Q+H L  K+    D      LI MY K G L+ A
Sbjct: 341 GIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKA 400

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            K+   ++++DVV+W +MI+GY QH   E+AL  F +M+D G+ PD+I   +   AC   
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             +  G+Q   + V   G AA    +  +V+L  R G+  EA  L +++  K +
Sbjct: 461 KAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDE 513



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 154/318 (48%), Gaps = 15/318 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--------PEKNSVSWSA 106
           V  A   F+ L  +D  SW  M+SG+ Q     +A  L+  M        P   S   SA
Sbjct: 94  VWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSA 153

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
              G +         +++K A         A+I+ Y+ FG   LAE++F +M   + VT+
Sbjct: 154 CTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTF 213

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N +I+G+ +    E  L++   M   G+RP+  +++S+L  C+ +  LQ GKQ+H  + K
Sbjct: 214 NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK 273

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + +  D      L+ +Y KCGD+E A  +F    R +VV WN M+  Y Q     K+  +
Sbjct: 274 AGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEI 333

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-SMVNDYGIAAKPDHYTC--MVD 343
           F +M+  G+ P+  T+  +L  C   G ++LG Q    S+ N +    + D Y    ++D
Sbjct: 334 FGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF----ESDMYVSGVLID 389

Query: 344 LLGRAGKLVEAVDLIKKM 361
           +  + G L +A  +++ +
Sbjct: 390 MYSKYGCLDKARKILEML 407



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G V  A ++F E+ +++ V+W AM++GY ++   ++  +L   M    + P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              LSSVL  C+       G+ +H  V+K   C +T     LI++Y   G  + A ++F 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++   D VT+N +ISG+AQ G GE AL++FD+M+  G++PD +T  +LL AC   G +  
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           G Q   S +   G++        ++DL  + G +  A D+ 
Sbjct: 264 GKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 128/312 (41%), Gaps = 54/312 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI--MLSCI--LLNSDDVVAAF 59
           K  + WN +++GF + R   K A  +F K+ Q     YN+   +S I  L N  D+    
Sbjct: 511 KDEITWNGLISGFGQSR-LYKQALMVFMKMGQAG-AKYNVFTFISAISALANLADIKQGK 568

Query: 60  DFFQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
               R        +T   N +IS + +  ++  A+ +F  M  +N VSW+ +I+    C 
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT---SCS 625

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
           Q  + +E                         +DL +++  E    N VT+  ++A    
Sbjct: 626 QHGRGLE------------------------ALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 176 NSWAEDGLKLLRMM---IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
               E+GL   + M    GL   P+  +    +LG     + QL +   + V + P+  +
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILG----RAGQLDR-ARRFVDEMPITAN 716

Query: 233 TTALTPLISMYCKC------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                 L+S  CK       G+L  A K  LE++  D  ++  + + YA  GK     ++
Sbjct: 717 AMIWRTLLSA-CKVHKNIEIGEL--AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQV 773

Query: 287 FDKMKDEGMKPD 298
              MKD G++ +
Sbjct: 774 RKMMKDRGIRKE 785


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/500 (39%), Positives = 310/500 (62%), Gaps = 3/500 (0%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            T++S + +   +A A+ +F  M E N V+W+A+++    CG +  A  +F   P +++ 
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLT 204

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W  M++GY K G+++LA KLF EMP K+ V+W+ MI G+  N +  +     R +  +G
Sbjct: 205 SWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVG 264

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +RPN  SL+  L  C+   +++ GK +H  + KS      +    L+  Y KCG++  A 
Sbjct: 265 MRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMAR 324

Query: 254 KLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +F  + +++ +V+W +MI+G A HG GE+A++LF +M++ G++PD I F+++L AC+HA
Sbjct: 325 LVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHA 384

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GL++ G +YF  M + Y I    +HY CMVDL GRAG+L +A + I  MP  P   I+ T
Sbjct: 385 GLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRT 444

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL AC +H  + LAE     L  L+P N +G +V L+NIYA   KW DVA +R SM +  
Sbjct: 445 LLGACSIHGNVKLAERVKERLSELDP-NNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQR 503

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG-YVPDLEFALHAV 491
           + K PG+S IEV  +++ F +G+  +      +EKLKE+  ++++ G Y+P++   LH +
Sbjct: 504 MNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDI 563

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +E KE  +  HSEKLA+AFG+ ++  G+ IR+ KNLRVC DCH   K IS +   EI+V
Sbjct: 564 EDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVV 623

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD +RFH FK G+CSC DYW
Sbjct: 624 RDRSRFHSFKTGSCSCRDYW 643



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 55/330 (16%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L     + G +  A+++F+++ +P+VV++N +++       DV  A   F R+P ++ 
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACF-RCGDVKGADMMFNRMPFRNL 203

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK----- 125
            SWN M++G+ +   +  AR LFL MP K+ VSWS MI G+   G   +A   F+     
Sbjct: 204 TSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQV 263

Query: 126 -VAP----------------------------VKSVVAW-----TAMISGYMKFGKVDLA 151
            + P                             KS   W      A++  Y K G V +A
Sbjct: 264 GMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMA 323

Query: 152 EKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
             +F+ MP K ++V+W +MIAG   + + E+ ++L   M   GIRP+  +  S+L  CSH
Sbjct: 324 RLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSH 383

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQ-RK 262
              ++ G   ++  +K    KD   + P       ++ +Y + G L+ A +  + +    
Sbjct: 384 AGLIEKG---YEYFYK---MKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLP 437

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             + W  ++   + HG  + A R+ +++ +
Sbjct: 438 TAIIWRTLLGACSIHGNVKLAERVKERLSE 467


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 276/437 (63%), Gaps = 2/437 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A++  Y K  ++  A  +FDEMP +++VTW +++ G          ++  R M+  G+ 
Sbjct: 82  NALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVA 141

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  ++++VL  C+  ++L+LG+ VH    +S      +    L+SMY K G L DA  +
Sbjct: 142 TDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTV 201

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  ++ +  +TW A+I GYAQ+G+G ++L ++  M   G +PD +TFV LL AC+HAGL+
Sbjct: 202 FDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLL 261

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLL 374
           D G  +F SM +++GI+  PDHY CMVDLLGRAG+L EAVDL+ + P     A ++  LL
Sbjct: 262 DAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALL 321

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           +ACR H+   LAE AA  ++ L+P +A   YV L+N+Y+  ++W DVAR+R  M+   + 
Sbjct: 322 AACRTHRNAALAERAAGMVWRLDPTDAMP-YVMLSNLYSRARRWGDVARVRALMRSRGIS 380

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SW+ V  V H F +GDR H     I+ K +E+  R++  G+VPD E+AL     E
Sbjct: 381 KEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGHVPDTEWALQDEAPE 440

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            +E  L  H E+LA+AFGL+ VP   PIRV+KNLRVCGDCH A K ++ +  REII+RD+
Sbjct: 441 GREMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKMVAEVYGREIILRDS 500

Query: 555 TRFHHFKDGTCSCGDYW 571
             FHH KDG+CSCGDYW
Sbjct: 501 NCFHHMKDGSCSCGDYW 517


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/524 (41%), Positives = 300/524 (57%), Gaps = 13/524 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN---------SVSWSAMI 108
           A+  F  + +K+  SW  MI G ++     +A DLF  + E            V  +   
Sbjct: 158 AWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACAR 217

Query: 109 SGYIECGQ-LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            G +E G+ +D+ +   +    ++V   T+++  Y K G ++ A  +FD M  K++V W+
Sbjct: 218 LGDLESGRWIDRCMR--ECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWS 275

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AMI GY  N    + ++L   M  + +RP+  ++   L  C+ L +L+LG     L+   
Sbjct: 276 AMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYE 335

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
               +    T LI  Y KCG +E+A  ++  ++ KD V +NA+ISG A +G+   A  +F
Sbjct: 336 EFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVF 395

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M   G+ P+  TFV LL  C HAGLVD G  YF+SM +D+ +    +HY CMVDLL R
Sbjct: 396 GQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLAR 455

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AG L EA +LIK MP K    ++G+LL  CR+H+   LAE     L  L P N +G YV 
Sbjct: 456 AGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWN-SGHYVL 514

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+NIY+A ++WD+  +IR ++ E  + K+PGYSW+EV  VVHEF  GD  HP    I+EK
Sbjct: 515 LSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEK 574

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           L+ L K +K AGY P  EF L  V EE KE  L  HSEKLA+AF LI       IRV KN
Sbjct: 575 LESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKN 634

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVCGDCH A K+IS +  REI++RD  RFH F DG CSC DYW
Sbjct: 635 LRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 169/348 (48%), Gaps = 13/348 (3%)

Query: 62  FQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIEC 114
           F + P   +T  +NTMI G V K     A  L+ +M      P+  + S+       +  
Sbjct: 60  FHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNL 119

Query: 115 GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             L   +   +FK      V   T ++  Y K G +  A K+FD+M  KN+V+W  MI G
Sbjct: 120 FHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICG 179

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            +E     + + L R ++  G+RP+   +  VL  C+ L  L+ G+ + + + +  L ++
Sbjct: 180 CIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRN 239

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T L+ MY KCG +E+A  +F  +  KD+V W+AMI GYA +G   +A+ LF +M+ 
Sbjct: 240 VFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRK 299

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             ++PD    V  L +C   G ++LG  +   ++N     + P   T ++D   + G + 
Sbjct: 300 VNVRPDCYAMVGALSSCASLGALELG-NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSME 358

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA--EFAAMNLFNLNP 398
           EA+ + K M  K +  +F  ++S   ++ ++  A   F  M  F + P
Sbjct: 359 EALGVYKMMKEKDR-VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPP 405


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/438 (43%), Positives = 273/438 (62%), Gaps = 4/438 (0%)

Query: 137 AMISGYMKF---GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A++  Y +    G    A  +FDEMP +++VTW +++ G          ++    M+  G
Sbjct: 85  ALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYHGMVAAG 144

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           ++ +  ++++VL  C+  ++L +G+ VH       LC   +    L+SMY K G L DA 
Sbjct: 145 VQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDAR 204

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  +  +  +TW A+I GYAQ+G+G ++L ++  M   G +PD +TF+ LL AC+HAG
Sbjct: 205 AVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACSHAG 264

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G  +F SM  DYGIA  PDHY CMVDLLGRAG+L EA+DL+ +   +    ++ +L
Sbjct: 265 LVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSL 324

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACRVH+  +LAE AA  ++ L+P +A   YV L+N+Y+  ++W DVARIR  MK   +
Sbjct: 325 LGACRVHRNAELAERAAEMVWRLDPTDAVP-YVMLSNLYSRARRWGDVARIRALMKARGI 383

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG SW+ V  V H F   DR HP    I+ K++E+ +R++  GYVPD ++AL     
Sbjct: 384 TKEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERIRAEGYVPDTDWALQDEAP 443

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E +E+ L +HSE+LA+AFGL+ VP   PIRVFKNLRVCGDCH A K ++    R II+RD
Sbjct: 444 EGRERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKAYGRVIILRD 503

Query: 554 TTRFHHFKDGTCSCGDYW 571
              FHH KDG CSCGDYW
Sbjct: 504 ANCFHHMKDGECSCGDYW 521



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 50/279 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS---------DDVVAA---FDFFQRLPIK 68
           G    A+ +FD++P+ DVV++  +L+ +               +VAA    D F    + 
Sbjct: 97  GGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYHGMVAAGVQTDEFAVAAVL 156

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
            + + +T +   V +   A A  + L +    SV  ++++S Y + G L  A  +F   P
Sbjct: 157 SSCAGSTALD--VGRSVHAAA--VHLGLCPFRSVG-NSLVSMYAKTGALHDARAVFDAMP 211

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            +  + WTA+I GY + G+                                   L++   
Sbjct: 212 ARCTITWTALIVGYAQNGR-------------------------------GRRSLEVYTD 240

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           M+  G RP+  +   +L  CSH   +  G+     +     +         ++ +  + G
Sbjct: 241 MVRSGCRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAG 300

Query: 248 DLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
            L++A  L      + D   W +++     H   E A R
Sbjct: 301 RLDEAMDLLNRSSTELDATVWKSLLGACRVHRNAELAER 339



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 41/225 (18%)

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-------- 213
            +V +NA I+           L L R M G G+R +  +L  +L   + L          
Sbjct: 8   GVVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAALLRGPPGAVAAL 67

Query: 214 ---LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
              L      H L   + L  D  A  P        G    A  +F E+ R+DVVTW ++
Sbjct: 68  HALLLRAGLAHHLHVANALV-DAYARLPC------AGGAATARAVFDEMPRRDVVTWTSL 120

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGI 319
           ++G A+ G    A+R +  M   G++ D     A+L +C            HA  V LG+
Sbjct: 121 LTGLARAGAHAAAVRAYHGMVAAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGL 180

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             F S+ N             +V +  + G L +A  +   MP +
Sbjct: 181 CPFRSVGNS------------LVSMYAKTGALHDARAVFDAMPAR 213


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/509 (40%), Positives = 302/509 (59%), Gaps = 6/509 (1%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           ++  SW  +ISG +Q  ++  A  LF  M E     N  ++SAM+   +         ++
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQV 426

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
            K          TA+++ Y KFG  + A  +F  +  K++V W+AM++ + +    E   
Sbjct: 427 IKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGAT 486

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            L   M   GI+PN  ++SSV+  C+  S+ +  G+Q H +  K          + L+SM
Sbjct: 487 YLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSM 546

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y + G+++ A  +F     +D+V+WN+MISGYAQHG   KA+  F +M+  G++ D +TF
Sbjct: 547 YSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTF 606

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +A+++ C H GLV  G QYFDSMV D+ I    +HY CMVDL  RAGKL E + LI+ MP
Sbjct: 607 LAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMP 666

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F     ++ TLL ACRVHK ++L +F+A  L +L P +++  YV L+NIYAA  KW +  
Sbjct: 667 FPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSS-TYVLLSNIYAAAGKWKERD 725

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            +R  M    V K  G SWI++   VH F + D+ HP    I++KLK +  R+K  GY P
Sbjct: 726 EVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSP 785

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           +  F LH + E+ KE +L+ HSE+LA+AFGLI  P GTP+++ KNLRVCGDCH   K +S
Sbjct: 786 NTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVS 845

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IE REII+RD +RFHHF  G CSCGD+W
Sbjct: 846 MIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 139/279 (49%), Gaps = 9/279 (3%)

Query: 39  VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE 98
           VS    L  + +    V    + F+ +P K+  +W ++++G    +  ++   LF  M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 99  K----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDL 150
           +    N  ++++++S     G LD       +  K     SV    ++++ Y K G V+ 
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+ +F+ M T+++V+WN ++AG   N    + L+L         +   S+ ++V+  C++
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNA 269
           L  L L +Q+H  V K         +T L   Y KCG+L DA  +F +    ++VV+W A
Sbjct: 315 LKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +ISG  Q+G    A+ LF +M+++ + P+  T+ A+L A
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 155/321 (48%), Gaps = 45/321 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR---LP 66
           NS++  +AK  G ++DA+ +F+ +   D+VS+N +++ + LN  ++ A   F +    + 
Sbjct: 240 NSLMNMYAKC-GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
               +++ T+I      K +A AR L   + +          +A+   Y +CG+L  A+ 
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F            +M +G                  ++N+V+W A+I+G ++N      
Sbjct: 359 IF------------SMTTG------------------SRNVVSWTAIISGCIQNGDIPLA 388

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           + L   M    + PN  + S++L     +    L  Q+H  V K+         T L++ 
Sbjct: 389 VVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTALLAS 444

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y K G  EDA  +F  I++KDVV W+AM+S +AQ G  E A  LF+KM  +G+KP+  T 
Sbjct: 445 YSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTI 504

Query: 303 VALL--LACNHAGLVDLGIQY 321
            +++   AC  AG VD G Q+
Sbjct: 505 SSVIDACACPSAG-VDQGRQF 524



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 1/255 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V A T+++  YMK G V    ++F+ MP KN+VTW +++ G        + + L   M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            GI PN  + +SVL   +   +L LG++VH    K            L++MY KCG +ED
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F  ++ +D+V+WN +++G   +    +AL+LF + +    K    T+  ++  C +
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
              + L  Q   S V  +G     +  T + D   + G+L +A+++            + 
Sbjct: 315 LKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 372 TLLSACRVHKRLDLA 386
            ++S C  +  + LA
Sbjct: 374 AIISGCIQNGDIPLA 388



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 8/248 (3%)

Query: 155 FDEMPTKNL-VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            DE+P ++  V  N ++  Y       + L    +    G+  ++++LS VL  C  +  
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 214 LQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
             LG+Q+H L  K    + + +A T L+ MY KCG + +  ++F  + +K+VVTW ++++
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A      + + LF +M+ EG+ P+  TF ++L A    G +DLG Q   +    +G  
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG-QRVHAQSVKFGCR 233

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
           +       ++++  + G + +A  +   M  +   + + TL++      +L+  E  A+ 
Sbjct: 234 SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVS-WNTLMAGL----QLNECELEALQ 288

Query: 393 LFNLNPAN 400
           LF+ + A 
Sbjct: 289 LFHESRAT 296



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++LA ++K  G  +DA  +F  I Q DVV+++ MLSC    + D   A   F ++ I+ 
Sbjct: 439 TALLASYSK-FGSTEDALSIFKMIEQKDVVAWSAMLSC-HAQAGDCEGATYLFNKMAIQG 496

Query: 70  TASWNTMISGFVQ-----KKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDK 119
                  IS  +         + + R  F A+  K          SA++S Y   G +D 
Sbjct: 497 IKPNEFTISSVIDACACPSAGVDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVE 175
           A  +F+    + +V+W +MISGY + G    A + F +M    +    VT+ A+I G   
Sbjct: 556 AQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTH 615

Query: 176 NSWAEDGLKLLRMMI 190
           N    +G +    M+
Sbjct: 616 NGLVVEGQQYFDSMV 630



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG-- 115
           F+R   +D  SWN+MISG+ Q     KA + F  M     + + V++ A+I G    G  
Sbjct: 560 FERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLV 619

Query: 116 -----QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                  D  V   K+ P  ++  +  M+  Y + GK+D    L  +MP
Sbjct: 620 VEGQQYFDSMVRDHKINP--TMEHYACMVDLYSRAGKLDETMSLIRDMP 666


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/426 (44%), Positives = 269/426 (63%), Gaps = 1/426 (0%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A KLFDEMP  + VTW AMI GY     +   + L R M   G+ P+  ++ SVL
Sbjct: 159 GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVL 218

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+ L +L+LGK +   + K  + K       L+ M+ KCGD++ A  LF  + ++ +V
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIV 278

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +W ++I G A HG+G +A+ LF++MK  GM P+ I F+ LL AC+H+GLV+ G QYF  M
Sbjct: 279 SWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEM 338

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
              +GI  K +HY CMVDLL RAG + EA++ +++MP +P P I+ TL+SACRVH  L L
Sbjct: 339 TRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKL 398

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
            E  +  L    P + +  YV L+NIY  M  W+  ++IR++M +  + K+PG + IE+ 
Sbjct: 399 GESISKQLIRNEPMHESN-YVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELD 457

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
             +HEF  GDR H +   I + + E+ + MK AGY P        + EE KE  L  HSE
Sbjct: 458 NEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSE 517

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           KLAIAF L+  P G+PIR+ KNLRVCGDCH A+K+IS I  REI++RD +RFHHF+DG C
Sbjct: 518 KLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQC 577

Query: 566 SCGDYW 571
           SCGD+W
Sbjct: 578 SCGDFW 583



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 166 WNAMIAGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           ++ +I  Y E+S ++ + +    +M+G GI PN  +   VL  C+ L  L LGK VH  +
Sbjct: 76  FSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSL 135

Query: 225 FKSPLCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
            K     D      ++ MYC C G +E A KLF E+ + D VTW AMI GYA+ G+   A
Sbjct: 136 VKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGA 195

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + LF KM+  G+ PD +T V++L AC   G ++LG ++ +S +    +    +    +VD
Sbjct: 196 VGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIESYIEKERVLKTVELSNALVD 254

Query: 344 LLGRAGKLVEAVDLIKKM 361
           +  + G + +A+ L + M
Sbjct: 255 MFAKCGDVDKALGLFRNM 272



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 101/259 (38%), Gaps = 54/259 (20%)

Query: 69  DTASWNTMISGFVQ-KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-- 125
           D    NTM+  +      M  AR LF  MP+ + V+W+AMI GY   GQ   AV LF+  
Sbjct: 143 DIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKM 202

Query: 126 ----VAP---------------------------------VKSVVAWTAMISGYMKFGKV 148
               V P                                 +K+V    A++  + K G V
Sbjct: 203 QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDV 262

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D A  LF  M  + +V+W ++I G   +    + + L   M   G+ P   +   +L  C
Sbjct: 263 DKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSAC 322

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE----IQRKDV 264
           SH   ++ G+Q     + S + +    + P I  Y    DL     L  E    ++R  +
Sbjct: 323 SHSGLVERGRQ-----YFSEMTRQ-FGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPI 376

Query: 265 ----VTWNAMISGYAQHGK 279
               + W  +IS    HG+
Sbjct: 377 EPNPIIWRTLISACRVHGE 395


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/509 (40%), Positives = 302/509 (59%), Gaps = 6/509 (1%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           ++  SW  +ISG +Q  ++  A  LF  M E     N  ++SAM+   +         ++
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQV 426

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
            K          TA+++ Y KFG  + A  +F  +  K++V W+AM++ + +    E   
Sbjct: 427 IKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGAT 486

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            L   M   GI+PN  ++SSV+  C+  S+ +  G+Q H +  K          + L+SM
Sbjct: 487 YLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSM 546

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y + G+++ A  +F     +D+V+WN+MISGYAQHG   KA+  F +M+  G++ D +TF
Sbjct: 547 YSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTF 606

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +A+++ C H GLV  G QYFDSMV D+ I    +HY CMVDL  RAGKL E + LI+ MP
Sbjct: 607 LAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMP 666

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           F     ++ TLL ACRVHK ++L +F+A  L +L P +++  YV L+NIYAA  KW +  
Sbjct: 667 FPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSS-TYVLLSNIYAAAGKWKERD 725

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            +R  M    V K  G SWI++   VH F + D+ HP    I++KLK +  R+K  GY P
Sbjct: 726 EVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSP 785

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           +  F LH + E+ KE +L+ HSE+LA+AFGLI  P GTP+++ KNLRVCGDCH   K +S
Sbjct: 786 NTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVS 845

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IE REII+RD +RFHHF  G CSCGD+W
Sbjct: 846 MIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 139/279 (49%), Gaps = 9/279 (3%)

Query: 39  VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE 98
           VS    L  + +    V    + F+ +P K+  +W ++++G    +  ++   LF  M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 99  K----NSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDL 150
           +    N  ++++++S     G LD       +  K     SV    ++++ Y K G V+ 
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+ +F+ M T+++V+WN ++AG   N    + L+L         +   S+ ++V+  C++
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNA 269
           L  L L +Q+H  V K         +T L   Y KCG+L DA  +F +    ++VV+W A
Sbjct: 315 LKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +ISG  Q+G    A+ LF +M+++ + P+  T+ A+L A
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 156/321 (48%), Gaps = 45/321 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR---LP 66
           NS++  +AK  G ++DA+ +F+ +   D+VS+N +++ + LN  ++ A   F +    + 
Sbjct: 240 NSLMNMYAKC-GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
               +++ T+I      K +A AR L   + +          +A+   Y +CG+L  A+ 
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           +F            +M +G                  ++N+V+W A+I+G ++N      
Sbjct: 359 IF------------SMTTG------------------SRNVVSWTAIISGCIQNGDIPLA 388

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           + L   M    + PN  + S++L     +    L  Q+H  V K+      +  T L++ 
Sbjct: 389 VVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLAS 444

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y K G  EDA  +F  I++KDVV W+AM+S +AQ G  E A  LF+KM  +G+KP+  T 
Sbjct: 445 YSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTI 504

Query: 303 VALL--LACNHAGLVDLGIQY 321
            +++   AC  AG VD G Q+
Sbjct: 505 SSVIDACACPSAG-VDQGRQF 524



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 1/255 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V A T+++  YMK G V    ++F+ MP KN+VTW +++ G        + + L   M  
Sbjct: 135 VSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRA 194

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            GI PN  + +SVL   +   +L LG++VH    K            L++MY KCG +ED
Sbjct: 195 EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED 254

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F  ++ +D+V+WN +++G   +    +AL+LF + +    K    T+  ++  C +
Sbjct: 255 AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
              + L  Q   S V  +G     +  T + D   + G+L +A+++            + 
Sbjct: 315 LKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 372 TLLSACRVHKRLDLA 386
            ++S C  +  + LA
Sbjct: 374 AIISGCIQNGDIPLA 388



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 8/248 (3%)

Query: 155 FDEMPTKNL-VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            DE+P ++  V  N ++  Y       + L    +    G+  ++++LS VL  C  +  
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 214 LQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
             LG+Q+H L  K    + + +A T L+ MY KCG + +  ++F  + +K+VVTW ++++
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A      + + LF +M+ EG+ P+  TF ++L A    G +DLG Q   +    +G  
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLG-QRVHAQSVKFGCR 233

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
           +       ++++  + G + +A  +   M  +   + + TL++      +L+  E  A+ 
Sbjct: 234 SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVS-WNTLMAGL----QLNECELEALQ 288

Query: 393 LFNLNPAN 400
           LF+ + A 
Sbjct: 289 LFHESRAT 296



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++LA ++K  G  +DA  +F  I Q DVV+++ MLSC    + D   A   F ++ I+ 
Sbjct: 439 TALLASYSK-FGSTEDALSIFKMIEQKDVVAWSAMLSC-HAQAGDCEGATYLFNKMAIQG 496

Query: 70  TASWNTMISGFVQ-----KKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDK 119
                  IS  +         + + R  F A+  K          SA++S Y   G +D 
Sbjct: 497 IKPNEFTISSVIDACACPSAGVDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVE 175
           A  +F+    + +V+W +MISGY + G    A + F +M    +    VT+ A+I G   
Sbjct: 556 AQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTH 615

Query: 176 NSWAEDGLKLLRMMI 190
           N    +G +    M+
Sbjct: 616 NGLVVEGQQYFDSMV 630



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG-- 115
           F+R   +D  SWN+MISG+ Q     KA + F  M     + + V++ A+I G    G  
Sbjct: 560 FERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLV 619

Query: 116 -----QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                  D  V   K+ P  ++  +  M+  Y + GK+D    L  +MP
Sbjct: 620 VEGQQYFDSMVRDHKINP--TMEHYACMVDLYSRAGKLDETMSLIRDMP 666


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/522 (41%), Positives = 308/522 (59%), Gaps = 13/522 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC--- 114
           A   F  +P KD  +W+TM++GFV      +A  ++  M E        ++ G I+    
Sbjct: 161 AIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMS 220

Query: 115 ---GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               ++  +V   L +      VV  T+++S Y K G +D+A ++F  MP +N VTW+A+
Sbjct: 221 TGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSAL 280

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+G+ +N  A + L L R +   G++P + +L S LL C+ +  L+LGK +H  + +  L
Sbjct: 281 ISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-L 339

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                  T ++ MY KCG LE A KLF ++  +D+V WNA+I+    HG G  AL LF +
Sbjct: 340 EWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQE 399

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           + + G+KPD  TF +LL A +H+GLV+ G  +FD M+ ++GI     HY C+VDLL R+G
Sbjct: 400 LNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSG 459

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            + EA D++  M  +P  AI+  LLS C  +K+L+L E  A  +  L P +  G    ++
Sbjct: 460 LVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPED-IGVLALVS 518

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YAA KKWD V  IR  MK++   K+PGYS IEV    H F   D+ HP+   I + + 
Sbjct: 519 NLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVA 578

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           +L   M+  GYVP  EF  H + E   +QLL +HSE+LAIAFGL+    GT + + KNLR
Sbjct: 579 KLNSEMRKLGYVPRTEFVYHDLDE---DQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLR 635

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VCGDCH A KYIS I  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 636 VCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 164/343 (47%), Gaps = 22/343 (6%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKA----VELFK 125
           WN ++S   +      A  +F A+P     NS +++  ++     G LD A    V  F 
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFA 135

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                 V   +A++  Y + G ++ A ++FD MP K+ V W+ M+AG+V      + L +
Sbjct: 136 AGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAM 195

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M   G+  +   +  V+  C    + ++G  VH  + +  +  D    T L+SMY K
Sbjct: 196 YSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAK 255

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G L+ AC++F  +  ++ VTW+A+ISG+AQ+G+  +AL LF +++ +G++P S   V+ 
Sbjct: 256 NGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSA 315

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM-----VDLLGRAGKLVEAVDLIKK 360
           LLAC   G + LG          +G   +   + C+     +D+  + G L  A  L  K
Sbjct: 316 LLACASVGFLKLGKSI-------HGFILRRLEWQCILGTAVLDMYSKCGSLESARKLFNK 368

Query: 361 MPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPANA 401
           +  +    ++  +++ C  H      LA F  +N   + P +A
Sbjct: 369 LSSR-DLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHA 410


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/580 (38%), Positives = 330/580 (56%), Gaps = 25/580 (4%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N  ++++ +AK R  L DA  LFD+ P+ D+  Y+ +L+ +  ++   +A       LPI
Sbjct: 122 NPAALVSAYAKSR-LLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELA-------LPI 173

Query: 68  -----------KDTASWNTMISGFVQKKNMAKARDL---FLAMP-EKNSVSWSAMISGYI 112
                       D    +++ S F + ++    R L   F+  P   + V  S+++  Y 
Sbjct: 174 LRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYC 233

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           +CG  D   ++F     K+ V WTA++SGY   G+ + A +LF  MP +NL  W A+I+G
Sbjct: 234 KCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISG 293

Query: 173 YVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            V    +   ++L   M   G+R  +A  LS V+ G + L++  LG+Q+H    +     
Sbjct: 294 LVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLS 353

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           +      LI MY KC D+  A ++F  I  +DV++W  M+ G AQHG+ E+AL L+D+M 
Sbjct: 354 NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMV 413

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G KP+ +TFV L+ AC+HAGLV  G Q F+SM N+YGI  +  HYTC +DLL R+G L
Sbjct: 414 LAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHL 473

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           +EA +L+  MP++P  A +G LLSAC  +K  ++    +  L  L P +++  Y+ L+N+
Sbjct: 474 LEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSS-TYILLSNV 532

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA   KWD VA++R  M    + K PGYSWIE G     F +G+        I   L+E+
Sbjct: 533 YAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEM 592

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
              M+  GYVPD    +H + E  KE  L  HSE+LA+AFGLIK P G+ IRV KNLRVC
Sbjct: 593 VLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVC 652

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH   K IS I  R+I+VRD++RFHHF+ G CSC ++W
Sbjct: 653 VDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 143/323 (44%), Gaps = 59/323 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K +V W ++++G+A   G+ ++A +LF  +P  ++ ++  ++S  L+N+ + V A +
Sbjct: 248 MSAKNSVVWTALVSGYASN-GRSEEALQLFRSMPGRNLFAWTALISG-LVNTGESVGAVE 305

Query: 61  FFQRL-----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGY 111
            F  +      I D    + +I G          R L  +        N +  +A+I  Y
Sbjct: 306 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 365

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            +C  +  A E+F+    + V++WT M+ G  + G+                        
Sbjct: 366 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR------------------------ 401

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
                  AE+ L L   M+  G +PN  +   ++  CSH   +Q G+Q    +F+S   K
Sbjct: 402 -------AEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQ----LFES--MK 448

Query: 232 DTTALTPLISMYC-------KCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 283
           +   +TP +  Y        + G L +A +L   +    D  TW A++S   ++   E  
Sbjct: 449 NEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMC 508

Query: 284 LRLFDKMKDEGMKP-DSITFVAL 305
           +R+ DK+ +  ++P DS T++ L
Sbjct: 509 IRISDKLLE--LRPKDSSTYILL 529


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 312/532 (58%), Gaps = 9/532 (1%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF------LAMPEKNS 101
           + + S DV  A   F+ +P  D   W+ MI+ + Q +   +A ++F      L +P + +
Sbjct: 290 LYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFT 349

Query: 102 VSWSAMISGYIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           ++        +   QL   +   + KV    +V    A++  Y K G+++ + +LF E P
Sbjct: 350 LASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
               V+WN +I GYV+    E  L L + M+   ++    + SSVL  C+ +++L+ G Q
Sbjct: 410 NCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQ 469

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H L  K+   K+T     LI MY KCG+++DA  +F  ++  D V+WNAMISGY+ HG 
Sbjct: 470 IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGL 529

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +AL+ F+ M +   KPD +TFV +L AC++AGL+D G  YF SMV +Y I    +HYT
Sbjct: 530 YGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYT 589

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
           CMV LLGR+G L +A  L+ ++PF+P   ++  LLSAC +H  ++L   +A  +  + P 
Sbjct: 590 CMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPE 649

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
           + A  +V L+NIYA  ++W +VA IR SMK   + K PG SWIE    VH F  GD  HP
Sbjct: 650 DEAT-HVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHP 708

Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 519
           +   I+  L+ L  + +  GYVPD    L  V +  KEQ L  HSE+LA+A+GLI+ P  
Sbjct: 709 DTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSI 768

Query: 520 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +P+R+ KNLR+C DCH A K IS I +R+II+RD  RFHHF +G CSCGDYW
Sbjct: 769 SPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 45/380 (11%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF---DFFQRLPIKDTASWNTMISGFVQ 82
           AQ      P+ +   Y  +L   + N D     +   +  ++    D  + N +++ +V+
Sbjct: 32  AQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVK 91

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------------------ 124
             ++  A  LF  MP++N+VS+  +I GY +C +  +A+ LF                  
Sbjct: 92  YDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTV 151

Query: 125 ---------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
                                K+         TA+I  Y   G  + A ++FD +  K++
Sbjct: 152 LKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDM 211

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W  M+A YVEN   E+ LKL   M  +G +PN  + +SVL  C  L    +GK VH  
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGC 271

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
            FK+   ++      LI +Y K GD++DA ++F E+ + DV+ W+ MI+ YAQ  + E+A
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMV 342
           + +F +M+   + P+  T  +LL AC  A LVDL +       V   G+         ++
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVKVGLDMNVFVSNALM 389

Query: 343 DLLGRAGKLVEAVDLIKKMP 362
           D+  + G++  ++ L  + P
Sbjct: 390 DMYAKCGRMENSLQLFSESP 409



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 172/336 (51%), Gaps = 20/336 (5%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYI- 112
           A   F  +  KD  SW  M++ +V+ +   ++  LF  M     + N+ ++++++   + 
Sbjct: 199 ARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVG 258

Query: 113 -ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            E   + KAV    FK + ++ +     +I  Y+K G VD A ++F+EMP  +++ W+ M
Sbjct: 259 LEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFM 318

Query: 170 IAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           IA Y ++  +E+ +++  RM  GL + PN  +L+S+L  C+ L  LQLG Q+H  V K  
Sbjct: 319 IARYAQSEQSEEAIEMFCRMRRGL-VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVG 377

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L  +      L+ MY KCG +E++ +LF E      V+WN +I GY Q G GEKAL LF 
Sbjct: 378 LDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFK 437

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT----CMVDL 344
            M +  ++   +T+ ++L AC     ++ G     S ++   +    D  T     ++D+
Sbjct: 438 DMLECQVQGTEVTYSSVLRACAGIAALEPG-----SQIHSLSVKTIYDKNTVVGNALIDM 492

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             + G + +A  L+  M  +     +  ++S   VH
Sbjct: 493 YAKCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVH 527



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           T V+WN+V+ G+  Q G  + A  LF  + +  V    +  S +L     + A     Q 
Sbjct: 412 TDVSWNTVIVGYV-QAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQI 470

Query: 65  LPI-------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             +       K+T   N +I  + +  N+  AR +F  + E + VSW+AMISGY   G  
Sbjct: 471 HSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLY 530

Query: 118 DKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
            +A++ F      +  P K  V +  ++S     G +D  +  F  M
Sbjct: 531 GEALKTFESMLETECKPDK--VTFVGILSACSNAGLLDRGQAYFKSM 575



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 10/157 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDF 61
           K TV  N+++  +AK  G +KDA+ +FD + + D VS+N M+S   ++    + +  F+ 
Sbjct: 481 KNTVVGNALIDMYAKC-GNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFES 539

Query: 62  FQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECG 115
                 K D  ++  ++S       + + +  F +M E+  +      ++ M+      G
Sbjct: 540 MLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSG 599

Query: 116 QLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLA 151
            LDKA +L    P + SV+ W A++S  +    V+L 
Sbjct: 600 HLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELG 636


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 300/527 (56%), Gaps = 42/527 (7%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-------------KVAPVKS- 131
           +  AR +   MPEKN VSW+AMIS Y + G   +A+ +F               A V + 
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 132 ----------------VVAW---------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                           +V W         ++++  Y K G++  A ++F+ +P +++V+ 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            A+IAGY +    E+ L++   +   G+ PN  + +S+L   S L+ L  GKQ H  V +
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L         LI MY KCG+L  A +LF  +  +  ++WNAM+ GY++HG G + L L
Sbjct: 283 RELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL 342

Query: 287 FDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTCMVDL 344
           F  M+DE  +KPD++T +A+L  C+H  + D G+  FD MV  +YG     +HY C+VD+
Sbjct: 343 FRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDM 402

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG++ EA + IK+MP KP   + G+LL ACRVH  +D+ E     L  + P NA G 
Sbjct: 403 LGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENA-GN 461

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+N+YA+  +W DV  +R  M +  V K PG SWI+    +H F + DR HP    +
Sbjct: 462 YVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEV 521

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
             K+KE+  +MK AGYVPDL   L+ V EE KE++LL HSEKLA+ FGLI    G PIRV
Sbjct: 522 LAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRV 581

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           FKNLR+C DCH   K  S + +RE+ +RD  RFH   DG CSCGDYW
Sbjct: 582 FKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 12/225 (5%)

Query: 145 FGKVDL---AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           +GK D    A K+ DEMP KN+V+W AMI+ Y +   + + L +   M+    +PN  + 
Sbjct: 97  YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF 156

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           ++VL  C   S L LGKQ+H L+ K          + L+ MY K G +++A ++F  +  
Sbjct: 157 ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE 216

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+  A+I+GYAQ G  E+AL +F ++  EGM P+ +T+ +LL A +   L+D G Q 
Sbjct: 217 RDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA 276

Query: 322 FDSMVND----YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
              ++      Y +         ++D+  + G L  A  L   MP
Sbjct: 277 HCHVLRRELPFYAVLQNS-----LIDMYSKCGNLSYARRLFDNMP 316



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 8/271 (2%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  + L  + F   PT  ++     I+    N   ++ L  + M   LG         ++
Sbjct: 2   FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAM---LGPEMGFHGYDAL 58

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C    +L+ G++VH  + K+     T   T L+  Y KC  LEDA K+  E+  K+V
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           V+W AMIS Y+Q G   +AL +F +M     KP+  TF  +L +C  A  + LG Q    
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-IHG 177

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           ++  +   +     + ++D+  +AG++ EA ++ + +P +   +    +      + +L 
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAG----YAQLG 233

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
           L E A      L+    +  YV  A++  A+
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTAL 264



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 80/267 (29%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS---------------CILLNSDDVVAAFDFFQRLPI 67
           L+DA+++ D++P+ +VVS+  M+S                 ++ SD     F F   L  
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 68  KDTAS--------------WN---------TMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
              AS              WN         +++  + +   + +AR++F  +PE++ VS 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 105 SAMISGYIECGQLDKAVELF---------------------------------------- 124
           +A+I+GY + G  ++A+E+F                                        
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           +  P  +V+   ++I  Y K G +  A +LFD MP +  ++WNAM+ GY ++    + L+
Sbjct: 283 RELPFYAVLQ-NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 341

Query: 185 LLRMMIGLG-IRPNASSLSSVLLGCSH 210
           L R+M     ++P+A +L +VL GCSH
Sbjct: 342 LFRLMRDEKRVKPDAVTLLAVLSGCSH 368



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 30/225 (13%)

Query: 7   VNWN---------SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVV 56
           V WN         S+L  +AK  G++K+A+E+F+ +P+ DVVS   I+     L  D+  
Sbjct: 180 VKWNYDSHIFVGSSLLDMYAKA-GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE-- 236

Query: 57  AAFDFFQRLPIKDT-------ASWNTMISG--FVQKKNMAKARDLFLAMPEKNSVSWSAM 107
            A + F RL  +         AS  T +SG   +     A    L   +P   +V  +++
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP-FYAVLQNSL 295

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG----KVDLAEKLFDEMPTK-N 162
           I  Y +CG L  A  LF   P ++ ++W AM+ GY K G     ++L   + DE   K +
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVL 205
            VT  A+++G       + GL +   M+    G +P       ++
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIV 400


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/539 (39%), Positives = 318/539 (58%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ SC L     +  A   F+++    +  +NTMI G V   ++ +A  L++ M E+  
Sbjct: 68  NLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGI 127

Query: 100 --NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             ++ ++  ++        L + V++    F       V     +IS Y K G ++ A  
Sbjct: 128 EPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGV 187

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS 212
           +F++M  K++ +W+++I  +       + L LL  M   G  R   S L S L  C+HL 
Sbjct: 188 VFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLG 247

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           S  LG+ +H ++ ++    +    T LI MY KCG LE    +F  +  K+  ++  MI+
Sbjct: 248 SPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIA 307

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG+G +ALR+F  M +EG+ PD + +V +L AC+HAGLV  G Q F+ M  ++ I 
Sbjct: 308 GLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIK 367

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY CMVDL+GRAG L EA DLIK MP KP   ++ +LLSAC+VH  L++ E AA N
Sbjct: 368 PTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADN 427

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           +F LN  N  G Y+ LAN+YA  +KW +VARIR  M E N+V+ PG+S +E    V++F 
Sbjct: 428 IFKLNKHNP-GDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFV 486

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D+  P+  +I++ ++++E ++K  GY PD+   L  V E+ K Q L  HS+KLAIAF 
Sbjct: 487 SQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFA 546

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI+   G+P+R+ +NLR+C DCH  TK+IS I +REI VRD+ RFHHFKDGTCSC DYW
Sbjct: 547 LIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 347/620 (55%), Gaps = 60/620 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSC------------ 47
           +T V W  ++  +A Q G   +A ELF    +   QPD  + + MLS             
Sbjct: 218 RTVVVWTLLITRYA-QSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQ 276

Query: 48  -------ILLNSDDVVA------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                  + L SD  V+                  A + F R+P  +  +W  ++SG+VQ
Sbjct: 277 LHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQ 336

Query: 83  KKNM-AKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA--- 134
           + +   +   LF  M  +    N +++S+M+      G  D   ++     VKS +A   
Sbjct: 337 RGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQI-HTHCVKSNLADLN 395

Query: 135 --WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
               A++S Y + G ++ A   FD++  KN+V+++  + G   ++  +D  ++ RM +G+
Sbjct: 396 VVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD-YQIERMELGI 454

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
               +  +  S++   + +  L  G+++H L  K+    D      L+SMY +CG L DA
Sbjct: 455 ----STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDA 510

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
           C++F E+   +V++W +MISG A+HG   +AL LF  M   G+KP+ +T++A+L AC+HA
Sbjct: 511 CQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHA 570

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV  G ++F  M   +G+  + +HY CMVDLLGR+G + +A+D I +MP +    ++ T
Sbjct: 571 GLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKT 630

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL AC+ H  +D+ E AA ++  L P + A  YV L+N+YA    WD VARIR  M++ N
Sbjct: 631 LLGACKTHNNMDIGEIAANHVIQLEPQDPAP-YVLLSNLYAEAGLWDQVARIRSLMRDKN 689

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           ++K  G SW+ V   +HEFR+GD  HP+   I+ KL+ L + +K+ GYVPD    LH + 
Sbjct: 690 LMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMS 749

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
           +E+KE  LL HSEK+A+AFGLI     T PIR+FKNLRVC DCH A KY+S    REII+
Sbjct: 750 DELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIIL 809

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD+ RFH  KDG CSCG+YW
Sbjct: 810 RDSNRFHRMKDGECSCGEYW 829



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 27/307 (8%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISGFVQKKNMAKARDL 92
           + D V  N +L+ +      V AA   F  +P+  +D  SW  M S   +    A+A  L
Sbjct: 81  ETDAVVANSLLT-LYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRL 139

Query: 93  FLAMPEKNSVSWSAMISGYIECG--QLDKAVELFKVAPV-------------KSVVAWTA 137
           F    E+       + + +  C   Q   A ELF +A                 V    A
Sbjct: 140 FGETLEEG-----LLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCA 194

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  + K G +    ++FD +  + +V W  +I  Y ++ ++++ ++L   M+  G +P+
Sbjct: 195 LIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPD 254

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD---LEDACK 254
             +LSS+L  C+ L S +LG+Q+H L  +  L  D+     L+ MY K  +   L +A +
Sbjct: 255 QYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNARE 314

Query: 255 LFLEIQRKDVVTWNAMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +F  + + +V+ W A++SGY Q G +  + + LF KM +EG++P+ IT+ ++L AC + G
Sbjct: 315 VFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLG 374

Query: 314 LVDLGIQ 320
             D G Q
Sbjct: 375 DQDSGRQ 381


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/521 (40%), Positives = 307/521 (58%), Gaps = 11/521 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--PEKNSVSWSAMISGYI--- 112
           A    + +P   T  +N ++ G  +  +   A      +  P+  + S+S + S      
Sbjct: 57  AAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTILHPDALTFSFSLIASARALAL 116

Query: 113 -ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            E  Q+     L +      ++  T +I  Y K G +D A+++FDE+P +++  WNA+IA
Sbjct: 117 SETSQIHS--HLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIA 174

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           G  + S + + L L   M   G + N  S+   L  CS L +L+ G+ VH  V K  L  
Sbjct: 175 GLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDI 234

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +      +I MY KCG  +   ++F  +   K VVTWN MI  +A HG G +AL LF++M
Sbjct: 235 NVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEM 294

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
               ++ DS+T++A+L ACNHAGLV+ G++ FD MV   G+     HY  +VDLLGRAG+
Sbjct: 295 GKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVG-RGVNRNVKHYGSVVDLLGRAGR 353

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA  +I  MP  P   ++ +LL AC+ +  +++AE A+  L  +  +N+ G +V L+N
Sbjct: 354 LGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMG-SNSCGDFVLLSN 412

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           +YAA ++W+DV R+R +MK  +V K+PG+S+IEV  V+H+F +GD+ HP+   I+ KL E
Sbjct: 413 VYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDE 472

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           +  R+K  GYV +    LH +GEE KE  L  HSEKLA+AFGLI    GTPIRV KNLR+
Sbjct: 473 IRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRI 532

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH   K IS I  +EIIVRD  RFH FKDG+CSC DYW
Sbjct: 533 CGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 14/256 (5%)

Query: 42  NIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM- 96
           +I+L   L+++     D+ +A   F  +P++D A+WN +I+G  Q    ++A  LF  M 
Sbjct: 134 DILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMR 193

Query: 97  PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVK-----SVVAWTAMISGYMKFGKVD 149
            E   ++  +++     C QL   +A E       K     +V    A+I  Y K G  D
Sbjct: 194 AEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFAD 253

Query: 150 LAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
              ++F  M   K++VTWN MI  +  +      L+L   M    +  ++ +  +VL  C
Sbjct: 254 KGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCAC 313

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTW 267
           +H   ++ G ++   +    + ++      ++ +  + G L +A ++   +    DVV W
Sbjct: 314 NHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLW 373

Query: 268 NAMISGYAQHGKGEKA 283
            +++     +G  E A
Sbjct: 374 QSLLGACKTYGNVEMA 389



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 24/294 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  AQ +FD+IP  DV ++N +++ +   S     A   F R+  +        + G 
Sbjct: 149 GDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKS-SEALALFNRMRAEGEKINEISVLGA 207

Query: 81  V---QKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPV-KS 131
           +    +    +A +   A   K     N    +A+I  Y +CG  DK   +F      KS
Sbjct: 208 LAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKS 267

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLR 187
           VV W  MI  +   G    A +LF+EM    +    VT+ A++         E+G++L  
Sbjct: 268 VVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFD 327

Query: 188 MMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
            M+G G+  N     SV  LLG     + +LG + ++++   P+  D      L+     
Sbjct: 328 EMVGRGVNRNVKHYGSVVDLLG----RAGRLG-EAYRIINSMPIVPDVVLWQSLLGACKT 382

Query: 246 CGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
            G++   E A +  +E+       +  + + YA   + E   R+ + MK   ++
Sbjct: 383 YGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVR 436


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/531 (39%), Positives = 301/531 (56%), Gaps = 16/531 (3%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSA 106
           N DD +  FD    +P K+  SW  +I+G++   +  +A   F  + E     +S S   
Sbjct: 164 NFDDALKVFD---DIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVK 220

Query: 107 MISGYIECGQ------LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
           +++     G       +D+ +    +   ++V   T+++  Y+K G ++ A  +F  MP 
Sbjct: 221 VLAACARLGDCTSGEWIDRYISDSGMG--RNVFVATSLLDMYVKCGNLERANLIFSAMPE 278

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           K++V+W+ MI GY  N   +  L L   M    ++P+  ++  VL  C+ L +L LG   
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
             L+ ++    +    T LI MY KCG +  A ++F  ++RKD V WNAM+ G + +G  
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHA 398

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +    LF  ++  G++PD  TF+ LL  C H G V+ G Q+F++M   + +    +HY C
Sbjct: 399 KAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC 458

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDLLGRAG L EA  LI  MP KP   ++G LL  C++HK   LAE     L  L P N
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWN 518

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
            +G YVQL+NIY+   +W++  +IR +MKE  + K+   SWIE+  +VHEF  GD+ H  
Sbjct: 519 -SGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWL 577

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+ KL EL + +K  G+VP  EF L  + EE KE  L +HSEKLA+AFGLI  P   
Sbjct: 578 SEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNH 637

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IRV KNLRVCGDCH A K IS I KREII+RDT RFH F DG+CSC DYW
Sbjct: 638 VIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 9/302 (2%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ-LDKAVEL------F 124
           WNTMI G V K     A  L+ +M     +  +  I   ++ C + LD  + L       
Sbjct: 82  WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K      V   T+++S Y+K    D A K+FD++P KN+V+W A+I GY+ +    + + 
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
             + ++ +G++P++ SL  VL  C+ L     G+ + + +  S + ++    T L+ MY 
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG+LE A  +F  +  KD+V+W+ MI GYA +G  ++AL LF +M+ E +KPD  T V 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC   G +DLGI +  S+++     + P   T ++D+  + G + +A ++   M  K
Sbjct: 322 VLSACATLGALDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRK 380

Query: 365 PQ 366
            +
Sbjct: 381 DR 382



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 147/326 (45%), Gaps = 48/326 (14%)

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           + FG  + ++ +F ++   N+  WN MI G V     +D + L   M G G  PN  ++ 
Sbjct: 59  LDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIP 118

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+    ++LG ++H L+ K+    D    T L+S+Y KC + +DA K+F +I  K
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK 178

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +VV+W A+I+GY   G   +A+  F K+ + G+KPDS + V +L AC   G    G ++ 
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWI 237

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-----------------P 365
           D  ++D G+       T ++D+  + G L  A  +   MP K                 P
Sbjct: 238 DRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLP 297

Query: 366 QPAI-----------------FGTLLSACRVHKRLDLAEFAA----MNLFNLNPA----- 399
           Q A+                    +LSAC     LDL  +A+     N F  NP      
Sbjct: 298 QQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTAL 357

Query: 400 ----NAAGCYVQLANIYAAMKKWDDV 421
               +  G   Q   I+ AMK+ D V
Sbjct: 358 IDMYSKCGSVTQAWEIFTAMKRKDRV 383



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 142/351 (40%), Gaps = 91/351 (25%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAF----------DFFQ--------- 63
           DA ++FD IP  +VVS+  +++  + +    + + AF          D F          
Sbjct: 167 DALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA 226

Query: 64  RLPIKDTASW-----------------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
           RL    +  W                  +++  +V+  N+ +A  +F AMPEK+ VSWS 
Sbjct: 227 RLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWST 286

Query: 107 MISGYIECGQLDKAVELF------KVAP-------------------------------- 128
           MI GY   G   +A++LF       + P                                
Sbjct: 287 MIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNE 346

Query: 129 -VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            + + V  TA+I  Y K G V  A ++F  M  K+ V WNAM+ G   N  A+    L  
Sbjct: 347 FLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFS 406

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C-- 244
           ++   GIRP+ ++   +L GC+H   +  G+Q    +      K   +LTP I  Y C  
Sbjct: 407 LVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNM------KRVFSLTPSIEHYGCMV 460

Query: 245 ----KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKM 290
               + G L +A +L   +  K + V W A++ G   H     A ++  K+
Sbjct: 461 DLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKL 511



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K +H  + +  L +D   L  ++      G    +  +F +++  ++  WN MI G    
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN---DYGIAAK 334
              + A+ L+  M+  G  P++ T   +L AC     V LG++    +V    D+ +  K
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               T ++ L  +     +A+ +   +P K
Sbjct: 153 ----TSLLSLYVKCDNFDDALKVFDDIPDK 178


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/616 (36%), Positives = 348/616 (56%), Gaps = 46/616 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAA 58
           M+V+ +V++N+++ G+ K     +  +   + + Q  PD+++ + +L       D  +A 
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAK 327

Query: 59  FDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           + +   L    + ++   N +I  + +  +M  ARD+F +M  K++VSW+++ISGYI+ G
Sbjct: 328 YIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSG 387

Query: 116 QLDKAVELFKVA----------------------------------PVKSVV-----AWT 136
            L +A++LFK+                                    +KS +        
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSN 447

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+I  Y K G+V  + K+F  M T + VTWN +I+  V       GL++   M    + P
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVP 507

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           + ++    L  C+ L++ +LGK++H  + +     +      LI MY KCG LE++ ++F
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVF 567

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             + R+DVVTW  MI  Y  +G+GEKAL  F  M+  G+ PDS+ F+A++ AC+H+GLVD
Sbjct: 568 ERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVD 627

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G+  F+ M   Y I    +HY C+VDLL R+ K+ +A + I+ MP KP  +I+ ++L A
Sbjct: 628 EGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRA 687

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR    ++ AE  +  +  LNP +  G  +  +N YAA++KWD V+ IR S+K+ ++ K 
Sbjct: 688 CRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKN 746

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHAVGEEV 495
           PGYSWIEVG  VH F SGD   P+  +I++ L+ L   M   GY+PD  E + +   EE 
Sbjct: 747 PGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEE 806

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           K +L+  HSE+LAIAFGL+    GTP++V KNLRVCGDCH  TK IS I  REI+VRD  
Sbjct: 807 KRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDAN 866

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH FKDGTCSC D W
Sbjct: 867 RFHLFKDGTCSCKDRW 882



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 191/406 (47%), Gaps = 47/406 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M V+  V+WNS+++G++   G  ++A E++ ++    +V  +  +S +L           
Sbjct: 167 MPVRDLVSWNSLISGYSSH-GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQ 225

Query: 50  -----------------LNSDDVVAAFDFFQR----------LPIKDTASWNTMISGFVQ 82
                            + ++ +VA +  F+R          + ++D+ S+NTMI G+++
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285

Query: 83  KKNMAKARDLFLA-----MPEKNSVSWSAMISGYIECGQLDKAV--ELFKVAPVKSVVAW 135
            + + ++  +FL       P+  +VS      G++    L K +   + K   V      
Sbjct: 286 LEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVR 345

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +I  Y K G +  A  +F+ M  K+ V+WN++I+GY+++    + +KL +MM+ +  +
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQ 405

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  +   ++   + L+ L+ GK +H    KS +C D +    LI MY KCG++ D+ K+
Sbjct: 406 ADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKI 465

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +   D VTWN +IS   + G     L++  +M+   + PD  TF+  L  C      
Sbjct: 466 FSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAK 525

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            LG +    ++  +G  ++      ++++  + G L  +  + ++M
Sbjct: 526 RLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERM 570



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 161/318 (50%), Gaps = 13/318 (4%)

Query: 57  AAFDFFQRL-PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI--- 108
           ++   F+R+ P K+   WN++I  F +     +A + +  + E     +  ++ ++I   
Sbjct: 57  SSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC 116

Query: 109 SGYIECGQLDKAVE-LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           +G  +    D   E +  +     +    A++  Y + G +  A ++FDEMP ++LV+WN
Sbjct: 117 AGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWN 176

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           ++I+GY  + + E+ L++   +    I P++ ++SSVL    +L  ++ G+ +H    KS
Sbjct: 177 SLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKS 236

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            +         L++MY K     DA ++F E+  +D V++N MI GY +    E+++R+F
Sbjct: 237 GVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF 296

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            +  D+  KPD +T  ++L AC H  L DL + +Y  + +   G   +      ++D+  
Sbjct: 297 LENLDQ-FKPDLLTVSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYA 353

Query: 347 RAGKLVEAVDLIKKMPFK 364
           + G ++ A D+   M  K
Sbjct: 354 KCGDMITARDVFNSMECK 371


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 336/591 (56%), Gaps = 38/591 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K+++  N++L  + K  G +  A +LFD++P  D VS+    + IL   +  +       
Sbjct: 36  KSSLLSNTLLDVYGKC-GLIPQALQLFDEMPNRDHVSW----ASILTAHNKAL------- 83

Query: 64  RLPIKDTASWNTMIS---------------------GFVQKKNMAKARDLFLAMPEKNSV 102
            +P +  +  NTM +                     G+++      AR   L+    + V
Sbjct: 84  -IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHAR-FMLSXFCDDEV 141

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             S++I  Y +CGQ D+A  +F     K+ V+WT+MISGY + G+   A  LF + P +N
Sbjct: 142 VKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRN 201

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVH 221
           L +W A+I+G +++        L   M   GI   +   LSSV+ GC++L+ L+LGKQ+H
Sbjct: 202 LFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH 261

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            LV              L+ MY KC D+  A  +F  + RKDV++W ++I G AQHGK E
Sbjct: 262 GLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAE 321

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +AL L+D+M    +KP+ +TFV LL AC+HAGLV  G + F SM  DY I     HYTC+
Sbjct: 322 EALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCL 381

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           +DLL R+G L EA +L+ K+PFKP    + +LLSAC  H  L++    A  + +L P + 
Sbjct: 382 LDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDP 441

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPE 460
           +  Y+ L+N+YA  + W  V+++R  M    V K PGYS I+ G     F +G+   HP 
Sbjct: 442 S-TYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPM 500

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I   LK+L+  M+  GYVP+  F L+ + ++ KE+ L +HSE+LA+A+GL+K   GT
Sbjct: 501 KNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGT 560

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IR+ KNLR+CGDCH   K+IS I KREI+VRD TR+HHFK+G CSC D+W
Sbjct: 561 IIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 34/276 (12%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ K    KS +    ++  Y K G +  A +LFDEMP ++ V+W +++  + +      
Sbjct: 28  QIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRR 87

Query: 182 GLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            L +L  M    G++P+    + ++  CS L  L+LGKQVH     S  C D    + LI
Sbjct: 88  TLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLI 147

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA------------------------- 275
            MY KCG  ++A  +F  I  K+ V+W +MISGYA                         
Sbjct: 148 DMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTA 207

Query: 276 ------QHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
                 Q G G  +  LF++M+ EG+   D +   +++  C +  L++LG Q    +V  
Sbjct: 208 LISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ-IHGLVIA 266

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G  +       +VD+  +   ++ A D+  +MP K
Sbjct: 267 LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 31/199 (15%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N S     L  C+   S     ++H  + K+   K +     L+ +Y KCG +  A +LF
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLV 315
            E+  +D V+W ++++ + +     + L + + M   +G++PD   F  ++ AC+  G +
Sbjct: 62  DEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYL 121

Query: 316 DLGIQYF---------------DSMVNDYGIAAKPDH---------------YTCMVDLL 345
            LG Q                  S+++ Y    +PD                +T M+   
Sbjct: 122 RLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGY 181

Query: 346 GRAGKLVEAVDLIKKMPFK 364
            R+G+  EA+DL  + P +
Sbjct: 182 ARSGRKCEAMDLFLQAPVR 200


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/524 (39%), Positives = 303/524 (57%), Gaps = 20/524 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F+ +P KD   W +MI GFV+  +  KA   ++ M     V+    I  ++ C  L    
Sbjct: 234 FEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKM-----VTDDVFIDQHVLCSTLSACS 288

Query: 122 ELFKVAPVKSVVAW-------------TAMISGYMKFGKVDLAEKLFD-EMPTKNLVTWN 167
            L   +  KS+ A               A+   Y K G +  A  +F       ++V+  
Sbjct: 289 ALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLT 348

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           A+I GYVE    E  L     +   GI PN  + +S++  C++ + L+ G Q+H  V K 
Sbjct: 349 AIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKF 408

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
              +D    + L+ MY KCG  + + +LF EI+  D + WN ++  ++QHG G  A+  F
Sbjct: 409 NFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETF 468

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           + M   G+KP+++TFV LL  C+HAG+V+ G+ YF SM   YG+  K +HY+C++DLLGR
Sbjct: 469 NGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGR 528

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AGKL EA D I  MPF+P    + + L AC++H  ++ A+FAA  L  L P N +G +V 
Sbjct: 529 AGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPEN-SGAHVL 587

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+NIYA  K+W+DV  +R  +K+ N+ K+PGYSW+++    H F   D  HP+   I+EK
Sbjct: 588 LSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEK 647

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           L  L  ++K  GYVP  E  L  + + +KE+LL +HSE++A+AF L+  P G PI V KN
Sbjct: 648 LDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKN 707

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVC DCH A K+IS + +R IIVRD +RFHHF +G+CSCGDYW
Sbjct: 708 LRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 23/229 (10%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G++D   KLFD+M  +N+V+W ++I G+  NS  ++ L     M   G      +L
Sbjct: 120 YSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFAL 179

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SSVL  C+ L ++Q G QVH LV K     +    + L  MY KCG+L DACK F E+  
Sbjct: 180 SSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPC 239

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----------- 310
           KD V W +MI G+ ++G  +KAL  + KM  + +  D     + L AC+           
Sbjct: 240 KDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSL 299

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           HA ++ LG +Y   + N             + D+  ++G +V A ++ +
Sbjct: 300 HATILKLGFEYETFIGN------------ALTDMYSKSGDMVSASNVFQ 336



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 159/401 (39%), Gaps = 61/401 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +  V+W S++ GFA    + ++A   F ++     ++    LS +L           
Sbjct: 136 MSQRNMVSWTSIITGFA-HNSRFQEALSSFCQMRIEGEIATQFALSSVL----------- 183

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q         + T +   V K       +LF+          S +   Y +CG+L  A
Sbjct: 184 --QACTSLGAIQFGTQVHCLVVKCGFG--CELFVG---------SNLTDMYSKCGELSDA 230

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            + F+  P K  V WT+MI G++K G    A   + +M     VT +  I  +V      
Sbjct: 231 CKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKM-----VTDDVFIDQHV------ 279

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
                               L S L  CS L +   GK +H  + K     +T     L 
Sbjct: 280 --------------------LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALT 319

Query: 241 SMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
            MY K GD+  A  +F +      +V+  A+I GY +  + EKAL  F  ++  G++P+ 
Sbjct: 320 DMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNE 379

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            TF +L+ AC +   ++ G Q    +V  +     P   + +VD+ G+ G    ++ L  
Sbjct: 380 FTFTSLIKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLVDMYGKCGLFDHSIQLFD 438

Query: 360 KMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
           ++   P    + TL+     H   R  +  F  M    L P
Sbjct: 439 EIE-NPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKP 478



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 183 LKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
              L+ + G G +  +  +++ ++   +    L  GKQ+H ++ +     +T      ++
Sbjct: 59  FSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLN 118

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y KCG+L+   KLF ++ ++++V+W ++I+G+A + + ++AL  F +M+ EG       
Sbjct: 119 LYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFA 178

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++L AC   G +  G Q    +V   G   +    + + D+  + G+L +A    ++M
Sbjct: 179 LSSVLQACTSLGAIQFGTQ-VHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEM 237

Query: 362 PFK 364
           P K
Sbjct: 238 PCK 240


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 323/554 (58%), Gaps = 9/554 (1%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
           A+ LFD+    ++   N M S  +    + + +  F+      ++ D  S  + IS   Q
Sbjct: 290 AKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349

Query: 83  KKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            +N+   +     +      SW    +A+I  Y++C + D A  +F     K+VV W ++
Sbjct: 350 LRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSI 409

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPN 197
           ++GY++ G+VD A + F+ MP KN+V+WN +I+G V+ S  E+ +++   M    G+  +
Sbjct: 410 VAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNAD 469

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             ++ S+   C HL +L L K ++  + K+ +  D    T L+ M+ +CGD E A  +F 
Sbjct: 470 GVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFN 529

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +DV  W A I   A  G  E+A+ LFD M ++G+KPD + FV  L AC+H GLV  
Sbjct: 530 SLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQ 589

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G + F SM+  +G++ +  HY CMVDLLGRAG L EAV LI+ MP +P   I+ +LL+AC
Sbjct: 590 GKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAAC 649

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           RV   +++A +AA  +  L P    G YV L+N+YA+  +W+D+A++RLSMKE  + K P
Sbjct: 650 RVQGNVEMAAYAAEKIQVLAPERT-GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPP 708

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S I++    HEF SGD  HPE+ +I   L E+ +R    G+VPDL   L  V E+ K 
Sbjct: 709 GTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKI 768

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
            +L  HSEKLA+A+GLI    GT IR+ KNLRVC DCH   K+ S +  REII+RD  RF
Sbjct: 769 FMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRF 828

Query: 558 HHFKDGTCSCGDYW 571
           H+ + G CSCGD+W
Sbjct: 829 HYIRQGKCSCGDFW 842



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 153/355 (43%), Gaps = 46/355 (12%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGY 111
           +A   F  +  ++  SW +MI G+ ++     A DLF  M        NSV+   +IS  
Sbjct: 187 SARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISAC 246

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISG----YMKFGKVDLAEKLFDEMPTKNLVTWN 167
            +   L+   +++       +     M+S     YMK   +D+A++LFDE    NL   N
Sbjct: 247 AKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AM + YV      + L +  +M+  G+RP+  S+ S +  CS L ++  GK  H  V ++
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
                      LI MY KC   + A ++F  +  K VVTWN++++GY ++G+ + A   F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426

Query: 288 DKMKD--------------------------------EGMKPDSITFVALLLACNHAGLV 315
           + M +                                EG+  D +T +++  AC H G +
Sbjct: 427 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486

Query: 316 DLG--IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           DL   I Y+   +   GI       T +VD+  R G    A+ +   +  +   A
Sbjct: 487 DLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 130/248 (52%), Gaps = 9/248 (3%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW--SAMISGYIECGQLDKAVELF 124
           +N++I G+       +A  LFL M      P+K +  +  SA      +   +     + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K+   K +    +++  Y + G++D A K+FDEM  +N+V+W +MI GY    +A+D + 
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 185 L-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           L  RM+    + PN+ ++  V+  C+ L  L+ G++V+  +  S +  +   ++ L+ MY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KC  ++ A +LF E    ++   NAM S Y + G   +AL +F+ M D G++PD I+ +
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 304 ALLLACNH 311
           + + +C+ 
Sbjct: 342 SAISSCSQ 349



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           +N++I GY  +    + + L   M+  GI P+  +    L  C+   +   G Q+H L+ 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K    KD      L+  Y +CG+L+ A K+F E+  ++VV+W +MI GYA+    + A+ 
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 286 LFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           LF +M +DE + P+S+T V ++ AC     ++ G + + + + + GI       + +VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDM 280

Query: 345 LGRAGKLVEAVDLIKKM 361
             +      A+D+ K++
Sbjct: 281 YMKC----NAIDVAKRL 293



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 46/303 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ KT V WNS++AG+  + G++  A E F+ +P+ ++V                     
Sbjct: 398 MSNKTVVTWNSIVAGYV-ENGEVDAAWETFETMPEKNIV--------------------- 435

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA--MISGYIECGQ-- 116
                      SWNT+ISG VQ     +A ++F +M  +  V+     M+S    CG   
Sbjct: 436 -----------SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 117 -LDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            LD A  ++    K      V   T ++  + + G  + A  +F+ +  +++  W A I 
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLC 230
                  AE  ++L   MI  G++P+  +    L  CSH   +Q GK++   + K   + 
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604

Query: 231 KDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
            +      ++ +  + G LE+A +L   + ++  DV+ WN++++     G  E A    +
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAE 663

Query: 289 KMK 291
           K++
Sbjct: 664 KIQ 666


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 328/562 (58%), Gaps = 15/562 (2%)

Query: 22  KLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           KLK  + +   I     + D+V  N +L+ +      +  A D F ++P KD  SW  +I
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILN-MYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178

Query: 78  SGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELF--KVAPV 129
           SG+ Q    ++A  LF  M      P + ++S     SG        + +  F  K    
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            +V   ++++  Y ++  +  A+ +F+ +  KN+V+WNA+IAG+      E  ++L   M
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM 298

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  G  P   + SSV   C+   SL+ GK VH  V KS           LI MY K G +
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 358

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +DA K+F  + ++D+V+WN++ISGYAQHG G +AL+LF++M    ++P+ ITF+++L AC
Sbjct: 359 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 418

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H+GL+D G QY+  ++  + I A+  H+  +VDLLGRAG+L EA   I++MP KP  A+
Sbjct: 419 SHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 477

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G LL +CR+HK +DL  +AA  +F L+P ++ G +V L+NIYA+  +  D A++R  MK
Sbjct: 478 WGALLGSCRMHKNMDLGVYAAEQIFELDPHDS-GPHVLLSNIYASAGRLSDAAKVRKMMK 536

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           E+ V K P  SW+E+   VH F + D  HP    I    +++  ++K  GYVPD    L 
Sbjct: 537 ESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLF 596

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            + ++ +E  L +HSEKLA+AF ++K P G  IR+ KN+R+CGDCH A K+ S +  REI
Sbjct: 597 FMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREI 656

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           IVRDT RFHHF  G CSC DYW
Sbjct: 657 IVRDTNRFHHFLHGMCSCRDYW 678



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P  +  S +L  C++L  L+ G+ +H  +  S    D   L  +++MY KCG LE+A 
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            LF ++  KD+V+W  +ISGY+Q G+  +AL LF KM   G +P+  T  +LL A    G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG-TG 219

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             D   +   +    YG        + ++D+  R   + EA
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA 260


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/435 (42%), Positives = 278/435 (63%), Gaps = 1/435 (0%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A++  Y K  +   A  LFDEMP +++VTW +++ G   +   +  L++ R M+  G+ P
Sbjct: 82  ALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEP 141

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +   +++ L  C+  ++L+LG+ VH    +  L    +    L+SMY K G L +A K+F
Sbjct: 142 DEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVF 201

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
              + +  VTW A+I GYAQ+G+GE++L+++ +M   G +PD +TF+ LL AC+HAGLVD
Sbjct: 202 DATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVD 261

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G  +F SM  D+GI   PDHY CMVD+LGRAG+L EA++L+ +   K    ++  LL A
Sbjct: 262 AGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGA 321

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR H+  +LAE AA  ++ L+P +A   Y+ L+N+Y+  ++W DVARIR  MK   + K 
Sbjct: 322 CRTHRNAELAERAAEMVWRLDPTDAVP-YIMLSNLYSRERRWSDVARIRTLMKSRGIAKE 380

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG SW+    V H F   DR HP    I+ K++E+ ++++  G+V D ++AL     E +
Sbjct: 381 PGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGR 440

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E+ L  HSE+LA+AFGL+ +P G P+RVFKNLRVCGDCH A K ++ +  REII+RD+  
Sbjct: 441 EKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNC 500

Query: 557 FHHFKDGTCSCGDYW 571
           FHH +DG CSCGDYW
Sbjct: 501 FHHMRDGVCSCGDYW 515


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/625 (34%), Positives = 338/625 (54%), Gaps = 63/625 (10%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD------ 54
            M  +  ++WNS++A +  Q GK  D  ++  ++ Q   V  ++  +  L    +      
Sbjct: 1109 MTERDLISWNSMMACYV-QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIE 1167

Query: 55   --------VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
                    +VA F  F  +        N +++ + +   M +A+ +   MP+ + V+W+A
Sbjct: 1168 SKIVHALIIVAGFHDFLIVG-------NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNA 1220

Query: 107  MISGYIECGQLDKAVELFKV------------------------------APVKSVVAWT 136
            +I G+ E  + ++AV+ +K+                               P+ + +  T
Sbjct: 1221 LIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT 1280

Query: 137  ----------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                      ++I+ Y K G ++ +  +FD +  K+ +TWNAM+A    +   E+ LK+ 
Sbjct: 1281 GFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIF 1340

Query: 187  RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
              M  +G+  +  S S  L   ++L+ L+ G+Q+H LV K     D       + MY KC
Sbjct: 1341 GEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKC 1400

Query: 247  GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            G++ D  K+  +   +  ++WN +IS +A+HG  +KA   F +M   G KPD +TFV+LL
Sbjct: 1401 GEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 1460

Query: 307  LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             ACNH GLVD G+ Y+DSM  ++G+    +H  C++DLLGR+G+L  A   IK+MP  P 
Sbjct: 1461 SACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPN 1520

Query: 367  PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
               + +LL+ACR+H  L+LA   A +L  L+P++ +  YV  +N+ A   KW+DV  +R 
Sbjct: 1521 DLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA-YVLYSNVCATSGKWEDVENLRK 1579

Query: 427  SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
             M  NN+ K P  SW+++   VH F  G++ HP+   I  KL EL K  K AGYVPD  F
Sbjct: 1580 EMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSF 1639

Query: 487  ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            ALH + EE KE  L  HSE+LA+AFGLI  P  + +R+FKNLRVCGDCH   K++S I  
Sbjct: 1640 ALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVG 1699

Query: 547  REIIVRDTTRFHHFKDGTCSCGDYW 571
            R+I++RD  RFHHF  G CSCGDYW
Sbjct: 1700 RKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/495 (32%), Positives = 255/495 (51%), Gaps = 59/495 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV----VSYNIML-SCILLNSDDV 55
           M  ++ V+W ++++G++ Q G+ + A  LF  +    V     +Y   L +C  L   D+
Sbjct: 91  MPERSVVSWTAMVSGYS-QNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDM 149

Query: 56  -------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
                  +    F + L +K     + ++    +   M  A  LF  M E++ VSW+AMI
Sbjct: 150 GIQVQGCIQKGRFVENLFVK-----SALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMI 204

Query: 109 SGYIECGQLDKAVELFK------VAP----VKSVVAWTA--------------------- 137
            GY   G  D +  +F+      + P    + SV+  +A                     
Sbjct: 205 GGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYG 264

Query: 138 --------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV-ENSWAEDGLKLLRM 188
                   +I+ Y K G +  A+ L   M  K+L +  A+I GY  E  ++ D L L + 
Sbjct: 265 SYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKE 324

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M  + I  +   L S+L  C++L+S  LG Q+H    K     D      LI MY K G+
Sbjct: 325 MNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGE 384

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +EDA + F E++ K+V++W ++ISGYA+HG G  A+ L+ KM+ +G KP+ +TF++LL A
Sbjct: 385 IEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFA 444

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H GL   G + F++MVN Y I  + +HY+CMVDL  R G L EA +L+ K+  K   +
Sbjct: 445 CSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNAS 504

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++G +L A  ++  + L + AA NLFN+ P N+   YV LA+IY+A   WDD  +IR  M
Sbjct: 505 LWGAILGASSIYGYMSLGKEAASNLFNMQPENSVN-YVVLASIYSAAGLWDDAWKIRKLM 563

Query: 429 KENNVVKMPGYSWIE 443
           +E +  K  GYS+ +
Sbjct: 564 EERSTKKNAGYSFFQ 578



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 123/265 (46%), Gaps = 7/265 (2%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I  Y+K G V  A  +FD MP +++V+W AM++GY +N   E    L   M   G++
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            N  +  S L  C+ L  L +G QV   + K    ++    + L+  + KCG +EDA  L
Sbjct: 129 ANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYL 188

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  +DVV+WNAMI GYA  G  + +  +F  M   G+ PD  T  ++L A    G +
Sbjct: 189 FGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGL 248

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL----IKKMPFKPQPAIFG 371
            +  Q    ++   G  +       +++   + G L  A DL    +KK  F     I G
Sbjct: 249 IIANQ-IHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITG 307

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNL 396
                      LDL  F  MN  N+
Sbjct: 308 YAHEGIYSVDALDL--FKEMNQMNI 330



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 40/268 (14%)

Query: 74   NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
            NT+I+ + +  N+  AR +F  M  +N  SWS M+SGY+  G  ++AV LF         
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 842

Query: 125  -------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
                                           K   +  V   TA++  Y   G V  A+K
Sbjct: 843  PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 902

Query: 154  LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            LF+EMP  N+V+W +++ GY ++    + L + + M   G+  N ++ ++V   C  L  
Sbjct: 903  LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 962

Query: 214  LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
              LG QV   + +       +    LISM+     +E+AC +F  +   D+++WNAMIS 
Sbjct: 963  QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 1022

Query: 274  YAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            YA HG   ++LR F  M+    + +S T
Sbjct: 1023 YAHHGLCRESLRCFHWMRHLHNETNSTT 1050



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 177/413 (42%), Gaps = 91/413 (22%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------------- 124
           +V+  ++  AR++F  MPE++ VSW+AM+SGY + G+ +KA  LF               
Sbjct: 75  YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTY 134

Query: 125 ------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
                                   K   V+++   +A++  + K GK++ A  LF  M  
Sbjct: 135 GSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMME 194

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +++V+WNAMI GY    +A+D   + R M+  G+ P+  +L SVL   +    L +  Q+
Sbjct: 195 RDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQI 254

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG-K 279
           H ++ +            LI+ Y K G L  A  L   + +KD+ +  A+I+GYA  G  
Sbjct: 255 HGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIY 314

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
              AL LF +M    +  D +   ++L  C +     LG Q     ++ + +  +P +  
Sbjct: 315 SVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ-----IHAFALKYQPSYDV 369

Query: 340 CM----VDLLGRAGKLVE-------------------------------AVDLIKKMP-- 362
            M    +D+  ++G++ +                               AV L KKM   
Sbjct: 370 AMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESK 429

Query: 363 -FKPQPAIFGTLLSACRVHKRLDLAE----FAAM-NLFNLNP-ANAAGCYVQL 408
            FKP    F +LL AC  H  L  AE    F  M N +N+ P A    C V L
Sbjct: 430 GFKPNDVTFLSLLFACS-HTGLT-AEGCECFNNMVNKYNIKPRAEHYSCMVDL 480



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 202/434 (46%), Gaps = 45/434 (10%)

Query: 55   VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
            V  A   F+ +P  +  SW +++ G+    N  +  +++  M ++    N  +++ + S 
Sbjct: 897  VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS- 955

Query: 111  YIECGQLDKAVELFKV-------APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
               CG L+  V  ++V           SV    ++IS +  F  V+ A  +FD M   ++
Sbjct: 956  --SCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDI 1013

Query: 164  VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
            ++WNAMI+ Y  +    + L+    M  L    N+++LSS+L  CS + +L+ G+ +H L
Sbjct: 1014 ISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGL 1073

Query: 224  VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
            V K  L  +      L+++Y + G  EDA  +F  +  +D+++WN+M++ Y Q GK    
Sbjct: 1074 VVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDG 1133

Query: 284  LRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQYFDSMV---NDYGIAAKPDHYT 339
            L++  ++   G   + +TF + L AC N   L++  I +   +V   +D+ I        
Sbjct: 1134 LKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNA---- 1189

Query: 340  CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-- 397
             +V + G+ G ++EA  +++ MP +P    +  L+     ++  + A   A  L      
Sbjct: 1190 -LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEA-VKAYKLIREKGI 1246

Query: 398  PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
            PAN    Y+ + ++  A    DD+ +            MP    I    V+  F S D V
Sbjct: 1247 PAN----YITMVSVLGACSAPDDLLK----------HGMP----IHAHIVLTGFESDDYV 1288

Query: 458  HPELVSIHEKLKEL 471
               L++++ K  +L
Sbjct: 1289 KNSLITMYAKCGDL 1302



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 136  TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
              +I+ Y KFG ++ A  +FDEM  +N  +W+ M++GYV     E+ + L   M GLG+ 
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 842

Query: 196  PNASSLSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN   ++S++  CS    +   G QVH  V K+ +  D    T L+  Y   G + +A K
Sbjct: 843  PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 902

Query: 255  LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            LF E+   +VV+W +++ GY+  G   + L ++ +M+ EG+  +  TF  +  +C   GL
Sbjct: 903  LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GL 959

Query: 315  VD---LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            ++   LG Q    ++  YG          ++ +      + EA  +   M
Sbjct: 960  LEDQVLGYQVLGHII-QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 1008



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 136/293 (46%), Gaps = 30/293 (10%)

Query: 37   DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
            D VS    L  +  +   V  A   F  +   D  SWN MIS +       ++   F  M
Sbjct: 980  DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 1039

Query: 97   ----PEKNSVS---------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                 E NS +               W   I G +            K+    +V     
Sbjct: 1040 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLV-----------VKLGLDSNVCICNT 1088

Query: 138  MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            +++ Y + G+ + AE +F  M  ++L++WN+M+A YV++    DGLK+L  ++ +G   N
Sbjct: 1089 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN 1148

Query: 198  ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              + +S L  CS+   L   K VH L+  +           L++MY K G + +A K+  
Sbjct: 1149 HVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQ 1208

Query: 258  EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
             + + D VTWNA+I G+A++ +  +A++ +  ++++G+  + IT V++L AC+
Sbjct: 1209 TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G  +H  +  +    D    T LI  Y K GD+  A  +F  +  + VV+W AM+SGY+Q
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +G+ EKA  LF  M+  G+K +  T+ + L AC     +D+GIQ
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQ 152


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/518 (38%), Positives = 310/518 (59%), Gaps = 10/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQL 117
           F  +P +D  SW  +I+G+ Q    A+A     D+  A    +  ++++ +     CG  
Sbjct: 120 FDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGR 179

Query: 118 DKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               ++  +A      + V   +A++  Y +  ++D+A ++FD + +KN V+WNA+IAG+
Sbjct: 180 GIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF 239

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
                 E  L     M   G      + SSV    + + +L+ G+ VH  + KS      
Sbjct: 240 ARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTA 299

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                ++ MY K G + DA K+F  + ++D+VTWN M++ +AQ+G G++A+  F++++  
Sbjct: 300 FVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKY 359

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++ + ITF+++L AC+H GLV  G QYFD M+ DY +  + DHY   VDLLGRAG L E
Sbjct: 360 GIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHYVSFVDLLGRAGLLKE 418

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  + KMP +P  A++G LL ACR+HK   + ++AA ++F L+P +  G  V L NIYA
Sbjct: 419 ALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDT-GPPVLLYNIYA 477

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +  +WDD AR+R  MK   V K P  SW+E+   VH F + D  HP+   I+   +E+  
Sbjct: 478 STGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNT 537

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           R+K AGYVP+ ++ L  + E+ +E  L +HSEK+A+AF LI +P G  IR+ KN+R+CGD
Sbjct: 538 RIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGD 597

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A +Y+S + KREI+VRDT RFHHF +G+CSCGDYW
Sbjct: 598 CHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 96/183 (52%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++I  Y K G V  A  +FD +PT+++V+W  +I GY +N    + L LL  M+    R
Sbjct: 101 NSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFR 160

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  + +S L          +G+Q+H L  K  L +D    + L+ MY +C  ++ A ++
Sbjct: 161 PSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRV 220

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  K+ V+WNA+I+G+A+ G GE  L  F +M+  G      T+ ++  A    G +
Sbjct: 221 FDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGAL 280

Query: 316 DLG 318
           + G
Sbjct: 281 EQG 283



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%)

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           GL+ L +++   + P      S++  C+   +L   + +H  + +S L  D   L  LI 
Sbjct: 46  GLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIH 105

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MYCKCG + DA  +F  I  +DVV+W  +I+GYAQ+    +AL L   M     +P   T
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 302 FVALLLACNHAGLVDLGIQ 320
           F + L A    G   +G Q
Sbjct: 166 FTSFLKAAGACGGRGIGEQ 184



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 9/229 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A   F  L  K+  SWN +I+GF +K +       F  M          ++S++ S    
Sbjct: 217 AIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALAR 276

Query: 114 CGQLDKA--VELFKVAPVKSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G L++   V    +   + + A+ A  ++  Y K G +  A K+FD +  ++LVTWN M
Sbjct: 277 IGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTM 336

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           +  + +    ++ +     +   GI+ N  +  SVL  CSH   ++ GKQ   ++    +
Sbjct: 337 LTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNV 396

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQH 277
             +       + +  + G L++A     ++        W A++     H
Sbjct: 397 EPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 445


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/614 (33%), Positives = 338/614 (55%), Gaps = 54/614 (8%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
            V+W++++     Q+G+ ++A E+F ++    V+     L+ ++  + D+    D +    
Sbjct: 397  VSWSAIITCL-DQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG---DLYYGES 452

Query: 67   IK----------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            I           D    N +++ +++  ++     +F A   ++ +SW+A++SG+ +   
Sbjct: 453  IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512

Query: 117  LDKAVELFK--------------VAPVKSVVAW-------------------------TA 137
             D  + +F               ++ ++S  +                          TA
Sbjct: 513  CDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 572

Query: 138  MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
            ++  Y K   ++ AE +F+ +  ++L  W  ++AGY ++   E  +K    M   G++PN
Sbjct: 573  LVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPN 632

Query: 198  ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              +L+S L GCS +++L  G+Q+H +  K+    D    + L+ MY KCG +EDA  +F 
Sbjct: 633  EFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFD 692

Query: 258  EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
             +  +D V+WN +I GY+QHG+G KAL+ F+ M DEG  PD +TF+ +L AC+H GL++ 
Sbjct: 693  GLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEE 752

Query: 318  GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
            G ++F+S+   YGI    +HY CMVD+LGRAGK  E    I++M       I+ T+L AC
Sbjct: 753  GKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGAC 812

Query: 378  RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
            ++H  ++  E AAM LF L P   +  Y+ L+N++AA   WDDV  +R  M    V K P
Sbjct: 813  KMHGNIEFGERAAMKLFELEPEIDSN-YILLSNMFAAKGMWDDVTNVRALMSTRGVKKEP 871

Query: 438  GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
            G SW+EV   VH F S D  HP++  IH KL++L +++   GY P+ +  LH V +  K+
Sbjct: 872  GCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQ 931

Query: 498  QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
            +LL +HSE+LA+AF L+       IR+FKNLR+CGDCH   K IS I  +E++VRD   F
Sbjct: 932  ELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCF 991

Query: 558  HHFKDGTCSCGDYW 571
            HHFK+G+CSC ++W
Sbjct: 992  HHFKNGSCSCQNFW 1005



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 192/401 (47%), Gaps = 50/401 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M  +  V+WN++L GFA Q G  +    LF ++   ++      LS +L    NS ++ A
Sbjct: 290 MPKQNAVSWNALLNGFA-QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRA 348

Query: 58  AFDFFQRLPIKDTASWNTMIS----GFVQKKNMA-KARDLFLAMPEKNSVSWSAMISGYI 112
                  L I+     +  IS        K  +A  A  +F+ + + + VSWSA+I+   
Sbjct: 349 G-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLD 407

Query: 113 ECGQLDKAVELFK------VAPVKSVVA-------------------------------- 134
           + GQ  +A E+FK      V P +  +A                                
Sbjct: 408 QKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNT 467

Query: 135 -WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              A+++ YMK G V    ++F+    ++L++WNA+++G+ +N   + GL++   M+  G
Sbjct: 468 VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEG 527

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             PN  +  S+L  CS LS + LGKQVH  + K+ L  +    T L+ MY K   LEDA 
Sbjct: 528 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 587

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F  + ++D+  W  +++GYAQ G+GEKA++ F +M+ EG+KP+  T  + L  C+   
Sbjct: 588 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 647

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            +D G Q   SM    G +      + +VD+  + G + +A
Sbjct: 648 TLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 687



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 19/285 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  +P +D  SW  +I+GFV +   + A +LF  M     E N  +++  +     C  L
Sbjct: 186 FGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDL 245

Query: 118 DKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +       E  KV     +   +A++  Y K G++ LAE++F  MP +N V+WNA++ G+
Sbjct: 246 EFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGF 305

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +   AE  L L   M G  I  +  +LS+VL GC++  +L+ G+ VH L  +     D 
Sbjct: 306 AQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDE 365

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY KCG   DA K+F+ I+  DVV+W+A+I+   Q G+  +A  +F +M+  
Sbjct: 366 FISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHS 425

Query: 294 GMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVN 327
           G+ P+  T  +L+ A             HA +   G +Y +++ N
Sbjct: 426 GVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCN 470



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 148/300 (49%), Gaps = 16/300 (5%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------NSVSW 104
           ++V A   F  +P ++  SWN +++GF Q  +  K  +LF  M            ++V  
Sbjct: 279 EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLK 338

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
               SG +  GQ+  ++ +     +   ++   ++  Y K G    A K+F  +   ++V
Sbjct: 339 GCANSGNLRAGQIVHSLAIRIGCELDEFIS-CCLVDMYSKCGLAGDALKVFVRIEDPDVV 397

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W+A+I    +   + +  ++ + M   G+ PN  +L+S++   + L  L  G+ +H  V
Sbjct: 398 SWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACV 457

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K     D T    L++MY K G ++D C++F     +D+++WNA++SG+  +   +  L
Sbjct: 458 CKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGL 517

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV------NDYGIAAKPDHY 338
           R+F++M  EG  P+  TF+++L +C+    VDLG Q    +V      ND+   A  D Y
Sbjct: 518 RIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMY 577



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 1/227 (0%)

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W ++++ Y K G  + A K+F E+P +++V+W A+I G+V   +    + L   M   G+
Sbjct: 166 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV 225

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             N  + ++ L  CS    L+ GKQVH    K     D    + L+ +Y KCG++  A +
Sbjct: 226 EANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAER 285

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +FL + +++ V+WNA+++G+AQ G  EK L LF +M    +     T   +L  C ++G 
Sbjct: 286 VFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGN 345

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +  G Q   S+    G         C+VD+  + G   +A+ +  ++
Sbjct: 346 LRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           S +L  C+    L  GK +H  V KS +  D+     L+++Y KCG    ACK+F EI  
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +DVV+W A+I+G+   G G  A+ LF +M+ EG++ +  T+   L AC+    ++ G Q 
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 322 FDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMP 362
               +    +    D +  + +VDL  + G++V A  +   MP
Sbjct: 252 HAEAIK---VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP 291


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 341/640 (53%), Gaps = 81/640 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+++ +   R K++ AQ+LFD++   DV+S+N M+S  + N  D      F + L    
Sbjct: 290 NSLISFYFVGR-KVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGV 348

Query: 70  TASWNTMISGFVQKKNM---------------------------------AKARDL---- 92
                TM++ FV   N+                                 +K  DL    
Sbjct: 349 DIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAI 408

Query: 93  --FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV----AWTAM-----ISG 141
             F  M EK  VSW++MI+GY+  G  D A++LF     + VV    A T++     I+G
Sbjct: 409 RVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAING 468

Query: 142 YMKFGKV---------------------DL---------AEKLFDEMPTKNLVTWNAMIA 171
            +K GK+                     D+         A  +F  M  K++++WN MI 
Sbjct: 469 NLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIG 528

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY +NS   + L L   M     +P+ ++++ +L  C+ L++L  G+++H    ++   +
Sbjct: 529 GYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSE 587

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      ++ MY KCG L  A  LF  I  KD+V+W  MI+GY  HG G +A+  F++M+
Sbjct: 588 DKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMR 647

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++PD ++F+++L AC+H+GL+D G + F+ M  +  I    +HY CMVDLL R G L
Sbjct: 648 MTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNL 707

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           V+A   IK MP KP   I+G LL  CR+H  + LAE  A  +F L P N  G YV LANI
Sbjct: 708 VKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPEN-TGYYVLLANI 766

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA  +KW++V ++R  + +  + K PG SWIE+   ++ F +GD   P+   I   LK L
Sbjct: 767 YAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRL 826

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             +MK  GY P   +AL    E  KE  L  HSEKLA+AFG++ +P G  IRV KNLRVC
Sbjct: 827 RSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVC 886

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K++S    REII+RD++RFHHFKDG+CSC  YW
Sbjct: 887 GDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 181/362 (50%), Gaps = 21/362 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           +R  ++D + +   I    V+   I+   L  + +   D+      F +L       WN 
Sbjct: 162 ERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNL 221

Query: 76  MISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELF----KVA 127
           MIS +    N  ++ +LF  M E     NS ++S+++  +    ++++  ++     K+ 
Sbjct: 222 MISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLG 281

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                    ++IS Y    KV  A+KLFDE+  +++++WN+MI+GYV+N   + G+++  
Sbjct: 282 FNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFI 341

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKC 246
            M+  G+  + +++ +V + C+++ +L LGK +H    K + L ++      L+ MY KC
Sbjct: 342 KMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKC 401

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           GDL  A ++F  +  K VV+W +MI+GY + G  + A++LFD+MK  G+ PD     ++L
Sbjct: 402 GDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSIL 461

Query: 307 LACNHAGLVDLGIQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            AC   G +  G      +V+DY     +         + D+  + G + +A D+   M 
Sbjct: 462 NACAINGNLKSG-----KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK 516

Query: 363 FK 364
            K
Sbjct: 517 KK 518



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 43/314 (13%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF 59
           N++T    ++ L     + G +KDA ++F  + + DV+S+N M+     NS  ++ +  F
Sbjct: 484 NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLF 543

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
              QR    D  +   ++        + K R++      +N  S      +A++  Y++C
Sbjct: 544 AEMQRESKPDGTTVACILPACASLAALDKGREIH-GYALRNGYSEDKYVTNAVVDMYVKC 602

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G L  A  LF + P K +V+WT MI+GY   G    A   F++M                
Sbjct: 603 GLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQM---------------- 646

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDT 233
                       RM    GI P+  S  S+L  CSH   L  G ++  ++ K   +  + 
Sbjct: 647 ------------RMT---GIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNL 691

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                ++ +  + G+L  A K    +  K D   W A++ G   H   + A ++ +++ +
Sbjct: 692 EHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFE 751

Query: 293 EGMKPDSITFVALL 306
             ++P++  +  LL
Sbjct: 752 --LEPENTGYYVLL 763



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S+L  C+   S++ G++V  ++  S +  D      L+ MY KCGDL++   +F ++   
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------H 311
            +  WN MIS Y+  G   +++ LF +M + G+KP+S TF ++L               H
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 312 AGLVDLGIQYFDSMVN 327
             +  LG   ++++VN
Sbjct: 275 GLICKLGFNSYNTVVN 290


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/646 (34%), Positives = 344/646 (53%), Gaps = 85/646 (13%)

Query: 8   NWNSVLAGFAKQRG----KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           N+   L+ F + R     +++ A++LFD++   DV+S+N M+S  + N        D F+
Sbjct: 182 NFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSE-KGLDLFE 240

Query: 64  RLPI----KDTASWNTMISG-----------------------------------FVQKK 84
           ++ +     D A+  ++++G                                   + +  
Sbjct: 241 QMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSG 300

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------------VAPVKS 131
           N+  A  +F  M E++ VSW++MI+GY   G  D +V LF              +  +  
Sbjct: 301 NLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILH 360

Query: 132 VVAWTAMISG--------------------------YMKFGKVDLAEKLFDEMPTKNLVT 165
             A T ++                            Y K G +  A  +F EM  K++V+
Sbjct: 361 ACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS 420

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN MI GY +NS   + L L   M     +PN+ +++ +L  C+ L++L+ G+++H  + 
Sbjct: 421 WNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHIL 479

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           ++    D      L+ MY KCG L  A  LF  I  KD+V+W  MI+GY  HG G +A+ 
Sbjct: 480 RNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIA 539

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
            F++M++ G++PD ++F+++L AC+H+GL+D G  +F+ M N+  I  K +HY C+VDLL
Sbjct: 540 AFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLL 599

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
            RAG L +A   IK MP +P   I+G LL  CR++  + LAE  A ++F L P N  G Y
Sbjct: 600 ARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN-TGYY 658

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V LANIYA  +KW++V ++R  +    + K PG SWIE+   VH F +GD  HP    I 
Sbjct: 659 VLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIE 718

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
             LK+   RMK  G+ P + +AL    +  KE  L  HSEK+A+AFG++ +P G  +RV 
Sbjct: 719 LLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVT 778

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLRVCGDCH   K++S + KR+II+RD+ RFHHFKDG+CSC  +W
Sbjct: 779 KNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 181/365 (49%), Gaps = 51/365 (13%)

Query: 21  GKLKDAQELFDKIPQPDV---VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L+ A EL ++ P+PD+      +++  C  L S              I+D    +++I
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYCSVLQLCADLKS--------------IQDGRRIHSII 127

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                     ++ D+     E + V  S ++  Y+ CG L +   +F     + V  W  
Sbjct: 128 ----------QSNDV-----EVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNL 172

Query: 138 MISGYMKFG------------------KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           +++GY K G                  +V+ A KLFDE+  +++++WN+MI+GYV N  +
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLS 232

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E GL L   M+ LGI  + +++ SV+ GCS+   L LG+ +H    K+   K+ T    L
Sbjct: 233 EKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCL 292

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           + MY K G+L  A ++F  +  + VV+W +MI+GYA+ G  + ++RLF +M+ EG+ PD 
Sbjct: 293 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDI 352

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            T   +L AC   GL++ G +   + + +  + +       ++D+  + G + +A  +  
Sbjct: 353 FTITTILHACACTGLLENG-KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFS 411

Query: 360 KMPFK 364
           +M  K
Sbjct: 412 EMQVK 416



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 179/364 (49%), Gaps = 25/364 (6%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           WN ++ G+AK  G  +++  LF ++ +              L    V +A   F  L  +
Sbjct: 170 WNLLMNGYAKI-GNFRESLSLFKRMRE--------------LGIRRVESARKLFDELGDR 214

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQL--DKAVE 122
           D  SWN+MISG+V      K  DLF  M       +  +  ++++G    G L   +A+ 
Sbjct: 215 DVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALH 274

Query: 123 LF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +  K +  K +     ++  Y K G ++ A ++F+ M  +++V+W +MIAGY     ++
Sbjct: 275 GYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSD 334

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             ++L   M   GI P+  +++++L  C+    L+ GK VH  + ++ +  D      L+
Sbjct: 335 MSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALM 394

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG + DA  +F E+Q KD+V+WN MI GY+++    +AL LF +M+    KP+SI
Sbjct: 395 DMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSI 453

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T   +L AC     ++ G +    ++ + G +        +VD+  + G L  A  L   
Sbjct: 454 TMACILPACASLAALERGQEIHGHILRN-GFSLDRHVANALVDMYLKCGALGLARLLFDM 512

Query: 361 MPFK 364
           +P K
Sbjct: 513 IPEK 516



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 54/323 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML-----SCILLN 51
           M  ++ V+W S++AG+A++ G    +  LF ++ +    PD+ +   +L     + +L N
Sbjct: 312 MGERSVVSWTSMIAGYARE-GLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLEN 370

Query: 52  SDDVVA-----------------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
             DV                               A   F  + +KD  SWNTMI G+ +
Sbjct: 371 GKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSK 430

Query: 83  KKNMAKARDLFLAM---PEKNSVSWSAMISGYIECGQLDKAVE-----LFKVAPVKSVVA 134
                +A +LF+ M    + NS++ + ++        L++  E     L     +   VA
Sbjct: 431 NSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA 490

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A++  Y+K G + LA  LFD +P K+LV+W  MIAGY  + +  + +     M   GI
Sbjct: 491 -NALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGI 549

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD--TTALTPLISMYCKCGDLEDA 252
            P+  S  S+L  CSH   L  G     ++ ++  C +  +     ++ +  + G+L  A
Sbjct: 550 EPDEVSFISILYACSHSGLLDEGWGFFNMM-RNNCCIEPKSEHYACIVDLLARAGNLSKA 608

Query: 253 CKLFLEIQ--RKDVVTWNAMISG 273
            K F+++     D   W A++ G
Sbjct: 609 YK-FIKMMPIEPDATIWGALLCG 630


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 335/591 (56%), Gaps = 38/591 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K+++  N++L  + K  G +  A +LFD++P  D VS+    + IL   +  +       
Sbjct: 36  KSSLLSNTLLDVYGKC-GLIPQALQLFDEMPNRDHVSW----ASILTAHNKAL------- 83

Query: 64  RLPIKDTASWNTMIS---------------------GFVQKKNMAKARDLFLAMPEKNSV 102
            +P +  +  NTM +                     G+++      AR   L+    + V
Sbjct: 84  -IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHAR-FMLSFFCDDEV 141

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             S++I  Y +CGQ D A  +F     K+ V+WT+MISGY + G+   A  LF + P +N
Sbjct: 142 VKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRN 201

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVH 221
           L +W A+I+G +++        L   M   GI   +   LSSV+ GC++L+ L+LGKQ+H
Sbjct: 202 LFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH 261

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            LV              L+ MY KC D+  A  +F  + RKDV++W ++I G AQHGK E
Sbjct: 262 GLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAE 321

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           +AL L+D+M    +KP+ +TFV LL AC+HAGLV  G + F SM  DY I     HYTC+
Sbjct: 322 EALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCL 381

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           +DLL R+G L EA +L+ K+PFKP    + +LLSAC  H  L++    A  + +L P + 
Sbjct: 382 LDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDP 441

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPE 460
           +  Y+ L+N+YA  + W  V+++R  M    V K PGYS I+ G     F +G+   HP 
Sbjct: 442 S-TYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPM 500

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I   LK+L+  M+  GYVP+  F L+ + ++ KE+ L +HSE+LA+A+GL+K   GT
Sbjct: 501 KNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGT 560

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IR+ KNLR+CGDCH   K+IS I KREI+VRD TR+HHFK+G CSC D+W
Sbjct: 561 IIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 34/276 (12%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ K    KS +    ++  Y K G +  A +LFDEMP ++ V+W +++  + +      
Sbjct: 28  QIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRR 87

Query: 182 GLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            L +L  M    G++P+    + ++  CS L  L+LGKQVH     S  C D    + LI
Sbjct: 88  TLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLI 147

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA------------------------- 275
            MY KCG  +DA  +F  I  K+ V+W +MISGYA                         
Sbjct: 148 DMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTA 207

Query: 276 ------QHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
                 Q G G  +  LF++M+ EG+   D +   +++  C +  L++LG Q    +V  
Sbjct: 208 LISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ-IHGLVIA 266

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G  +       +VD+  +   ++ A D+  +MP K
Sbjct: 267 LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 31/199 (15%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N S     L  C+   S     ++H  + K+   K +     L+ +Y KCG +  A +LF
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLV 315
            E+  +D V+W ++++ + +     + L + + M   +G++PD   F  ++ AC+  G +
Sbjct: 62  DEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYL 121

Query: 316 DLGIQ--------YF-------DSMVNDYGIAAKPD---------------HYTCMVDLL 345
            LG Q        +F        S+++ Y    +PD                +T M+   
Sbjct: 122 RLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGY 181

Query: 346 GRAGKLVEAVDLIKKMPFK 364
            R+G+  EA+DL  + P +
Sbjct: 182 ARSGRKCEAMDLFLQAPVR 200


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 342/624 (54%), Gaps = 80/624 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP------QPDVVSYNIMLS-CILLNSD 53
           M  +  V WNS+++  A Q G   DA  LF ++       QPD  ++  +L+ C    +D
Sbjct: 236 MGERNQVTWNSIISAEA-QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND 294

Query: 54  DVVAAFD--FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           +          +    K+      ++  + +   +  A+++F  M E+N+ SW++MI GY
Sbjct: 295 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISG-------------------------- 141
            + G+  +A+ LFK   +  +     + ++M+S                           
Sbjct: 355 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 414

Query: 142 ---------YMKFGKVDLAEKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
                    Y K G +D A K++D+   K  N   WN+++AGY      ++       M+
Sbjct: 415 ILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEML 474

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              I  +  ++ ++               V+ LV +          T L+ MY KCG + 
Sbjct: 475 ESDIEYDVLTMVTI---------------VNLLVLE----------TALVDMYSKCGAIT 509

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A  +F  +  K++V+WNAMISGY++HG  ++AL L+++M  +GM P+ +TF+A+L AC+
Sbjct: 510 KARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 569

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H GLV+ G++ F SM  DY I AK +HYTCMVDLLGRAG+L +A + ++KMP +P+ + +
Sbjct: 570 HTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTW 629

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G LL ACRVHK +D+   AA  LF L+P N  G YV ++NIYAA  +W +V  IR  MK 
Sbjct: 630 GALLGACRVHKDMDMGRLAAQRLFELDPQN-PGPYVIMSNIYAAAGRWKEVEDIRQMMKM 688

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             V K PG SWIE+ + +  F +G + HP+   I+  L+ L  + K  GY+PD  F L  
Sbjct: 689 KGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQN 748

Query: 491 VGE---EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           V +   E +E+ LL HSE+LA++ GLI +P  + IRVFKNLR+CGDCH ATK+IS I  R
Sbjct: 749 VKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGR 808

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
            II RDT RFHHF++G CSCGDYW
Sbjct: 809 RIIARDTNRFHHFENGKCSCGDYW 832



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 174/350 (49%), Gaps = 30/350 (8%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSA 106
           DD  +    F  +  ++  +WN++IS   Q  +   A  LFL M E       +  +++ 
Sbjct: 224 DDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTT 283

Query: 107 MISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           +++        ++       L +    K+++  T ++  Y + G+++ A+++F+ M  +N
Sbjct: 284 LLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERN 343

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
             +WN+MI GY +N   ++ L+L + M   GI+P+  SLSS+L  C  LS  Q G+++H 
Sbjct: 344 AYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN 403

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT--WNAMISGYAQHGKG 280
            + ++ + ++      L+ MY KCG ++ A K++ +  +KD  T  WN++++GYA  G  
Sbjct: 404 FIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLK 463

Query: 281 EKALRLFDKMKDEGMKPDSITFVALL-LACNHAGLVDL---------GIQYFDSMVNDYG 330
           +++   F +M +  ++ D +T V ++ L      LVD+             FD+M N   
Sbjct: 464 KESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNM-NGKN 522

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 377
           I +    +  M+    + G   EA+ L ++MP K   P    F  +LSAC
Sbjct: 523 IVS----WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSAC 568



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 19  QRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           QRGK    Q + +   P   +++  +ML       DD+  A   F+ +P ++  +WNTMI
Sbjct: 88  QRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI 147

Query: 78  SGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAV--ELFKVAPV 129
             + +  +  +A  +F  M      P+  + + +  + G +      K V  +L      
Sbjct: 148 LAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 207

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRM 188
                  A+I  Y K    +   K+FDEM  +N VTWN++I+   +     D L L LRM
Sbjct: 208 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM 267

Query: 189 MIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
                GI+P+  + +++L  C++  +   G+Q+H  + ++ + K+    T L+ MY +CG
Sbjct: 268 QESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECG 327

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L  A ++F  +  ++  +WN+MI GY Q+G+ ++ALRLF +M+  G+KPD  +  ++L 
Sbjct: 328 RLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLS 387

Query: 308 AC 309
           +C
Sbjct: 388 SC 389



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 130/271 (47%), Gaps = 10/271 (3%)

Query: 100 NSVSWSAMISGYIECG--QLDKAVELFKVAPVKSVVAW--TAMISGYMKFGKVD---LAE 152
           N + +S++I   I+    Q  K++    ++   +  A+  T ++  Y + G +D    A 
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           KLF+EMP +NL  WN MI  Y       +   +   M+ +G+ P+  + +S L  C  L 
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALR 189

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           S   GKQVH  +       DT     LI MY KC D E   K+F E+  ++ VTWN++IS
Sbjct: 190 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIIS 249

Query: 273 GYAQHGKGEKALRLFDKMK--DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
             AQ G    AL LF +M+  ++G++PD  TF  LL  C +    + G Q    ++    
Sbjct: 250 AEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-N 308

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           I       T +V +    G+L  A ++  +M
Sbjct: 309 ITKNIIVETELVHMYSECGRLNYAKEIFNRM 339


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 318/526 (60%), Gaps = 13/526 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYI 112
           A+  F  +P KD  SWN+++SG  +   + +   +F  M        N  ++ ++IS  +
Sbjct: 99  AYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACV 158

Query: 113 ECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTW 166
                D+   +     K+  V  V    A+++ Y KFG V+ A +LF EMP   K++V+W
Sbjct: 159 SEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSW 218

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+++A   +N    +      MM   G  P+ +++ S+L  C +    ++ + +H ++F 
Sbjct: 219 NSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFT 278

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L ++ T +T L+++Y K G L ++ K+F EI + D V W AM++GYA HG G++A+  
Sbjct: 279 CGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEF 338

Query: 287 FDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           F+++ ++EGM+PD +TF  LL AC+H+GLV  G  +F  M + Y +  + DHY+CMVDLL
Sbjct: 339 FERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLL 398

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR G L +A +LIK MPF+P   ++G LL ACRVH+ +DL + AA NL  L+P++    Y
Sbjct: 399 GRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRN-Y 457

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           + L+N+Y+A   W+D +++R  MK   + +  G S+IE G  +H F   D  HP+   IH
Sbjct: 458 IMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIH 517

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           +KL+E+ K+++  G+V + E  LH V EEVK  ++  HSEK+A+A+GL+      P+ + 
Sbjct: 518 KKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVII 577

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLR+C DCH   K++S +EKR II+RDT RFH F  G CSCGDYW
Sbjct: 578 KNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRP 196
           ++S Y+K G    A  LFDEMP K+ V+WN++++G  +     + L +  +M     ++ 
Sbjct: 86  LVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKL 145

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N  +  SV+  C    +   G  VH    K  L  +   +  L++MY K G +E A +LF
Sbjct: 146 NEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLF 205

Query: 257 LEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            E+    K +V+WN++++  AQ+G   +A   FD M+  G  PD  T V+LL AC +  L
Sbjct: 206 SEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPL 265

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
             + ++    ++   G+       T +++L  + G+L  +  + +++  KP    +  +L
Sbjct: 266 GRM-VEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEIS-KPDKVAWTAML 323

Query: 375 SACRVH 380
           +   +H
Sbjct: 324 AGYAMH 329



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           LS+++L     SS+ + + +H  V KS   +D      L+S Y K G  +DA  LF E+ 
Sbjct: 48  LSTLILHLKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMP 107

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGI 319
           +KD V+WN+++SG A+ G+  + L +F KMK D  +K +  TF++++ AC      D G 
Sbjct: 108 KKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEG- 166

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            Y        G+  +      +V++ G+ G +  A  L  +MP
Sbjct: 167 YYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMP 209



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 36/233 (15%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           + L     + G+L +++++F++I +PD V++  ML+   ++      A +FF+R+  +  
Sbjct: 289 TTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCG-KEAIEFFERIVREEG 347

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKA 120
              D  ++  ++S       + + +  F  M +   V      +S M+     CG LD A
Sbjct: 348 MEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDA 407

Query: 121 VELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
            EL K  P + +   W A++        +DL ++       KNL+         ++ S  
Sbjct: 408 HELIKNMPFEPNSGVWGALLGACRVHRNIDLGKE-----AAKNLIA--------LDPSDP 454

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVL--------LGCSHLSSLQLGKQVHQLV 224
            + + L  M    G+  +AS + +++         GCS    ++ G ++H+ V
Sbjct: 455 RNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSF---IEHGNKIHRFV 504


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/521 (39%), Positives = 312/521 (59%), Gaps = 13/521 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQ 116
           F  +  KD   W  MI+ + Q +   +A  LF  M ++     +S++  ++ S   + G 
Sbjct: 15  FDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGD 74

Query: 117 LDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           +  A  +    F+ + ++ +    ++++ + K G  + A  +FD M  +++++WN+M++G
Sbjct: 75  VKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSG 134

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N  A + L L   M     +P   +   ++  C++L    LG++ H  +  S +  D
Sbjct: 135 YTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEID 194

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           T     L+ MY KCGDLE A  LF  I    ++  +WN +ISGY  HG G++AL LF +M
Sbjct: 195 TNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRM 254

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           ++EG++P+  TF ++L AC+HAGL+D G + F  M     +  +  H+ C+VD+LGRAG 
Sbjct: 255 QEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEM-KRLSVTLEDKHHACVVDMLGRAGL 313

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L EA DLIK+MP  P   ++G LL AC++H  ++L + AA NL  L P N  G YV ++N
Sbjct: 314 LQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEP-NHTGYYVLMSN 372

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYAA  KW +V ++R  MK   + K   +S IE G  +  F + D+ +P    +++K++ 
Sbjct: 373 IYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMES 432

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L   MK+AGYVPDL  ALH V EE KE++L +HSEKLA+AFG++K+  G  IRV KNLRV
Sbjct: 433 LAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRV 492

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           C DCH A KYIS I +R+IIVRD  RFHHF+ GTCSC DYW
Sbjct: 493 CNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASS 200
           Y K G      K+FDEM TK+LV W AMI  Y +    E+ L L  +M    G+  ++ +
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIA 61

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           + SV      L  ++    VH   F+  L ++      +++M+ KCG+ E A  +F  + 
Sbjct: 62  VVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMM 121

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            +DV++WN+M+SGY Q+G+  +AL LFD+M+D   +P  +T + ++ AC + G   LG +
Sbjct: 122 ERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRK 181

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + D +V D  +    +    ++D+  + G L +AVDL   +P
Sbjct: 182 FHDFIV-DSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIP 222



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 23/236 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILLNSDDV 55
           M  +  ++WNS+L+G+  Q G+  +A  LFD++     QP  V+  IM+S C  L    +
Sbjct: 120 MMERDVISWNSMLSGYT-QNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHL 178

Query: 56  VAAFDFF---QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISG 110
              F  F    R+ I DT   N ++  + +  ++ KA DLF  +P  E+N+ SW+ +ISG
Sbjct: 179 GRKFHDFIVDSRMEI-DTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISG 237

Query: 111 YIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           Y   G   +A+ELF     + V      +T+++S     G +D   K F EM   ++   
Sbjct: 238 YGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLE 297

Query: 167 NAMIAGYVE----NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           +   A  V+        ++   L++ M      P+     ++LL C    +++LGK
Sbjct: 298 DKHHACVVDMLGRAGLLQEAFDLIKEMPS---PPSDGVWGALLLACKIHGNMELGK 350



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSI 300
           MY KCG   D  K+F E+  KD+V W AMI+ Y Q  K E+AL LF KM ++EG+  DSI
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 301 TFVALLLACNHAGLV 315
             V++  A    G V
Sbjct: 61  AVVSVASAVGQLGDV 75


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/467 (41%), Positives = 286/467 (61%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A++  Y EC  ++ A +LF    V+SVV+WT+++SG  + G+VD A  LF  MP ++ V
Sbjct: 184 NALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTV 243

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W AMI GYV+ +   + L++ R M    +  +  ++ SV+  C+ L +L++G+ V   +
Sbjct: 244 SWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYM 303

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            +  +  D      LI MY KCG +E A  +F ++  +D  TW A+I G A +G GE+A+
Sbjct: 304 SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAI 363

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F +M      PD +TF+ +L AC HAGLVD G ++F SM   Y IA    HY C++DL
Sbjct: 364 EMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDL 423

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAGK+ EA+D I +MP  P   I+GTLL+ACRVH   ++ E     L  ++P N+   
Sbjct: 424 FGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENST-V 482

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           Y  L+NIYA   +W+DV R+R ++ E  + K PG S IE+  ++HEF +GD+ HP    I
Sbjct: 483 YTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEI 542

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           + KL+ +   +   GY PD+      V EE K+++L +HSEKLAIAF L+     T IR+
Sbjct: 543 YCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRI 602

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K IS +  RE++VRD TRFHHF+ G CSC DYW
Sbjct: 603 VKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 154/357 (43%), Gaps = 77/357 (21%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFD 60
           T V + SVL+   K  G +    ++  ++      PD+   N ++  +     D+ +A+ 
Sbjct: 143 TPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVD-MYAECADMESAWK 201

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  + ++   SW +++SG  +   + +ARDLF  MPE+++VSW+AMI GY++  +  +A
Sbjct: 202 LFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREA 261

Query: 121 VELFKVAPVKSVVA----------------------W-----------------TAMISG 141
           +E+F+     +V A                      W                  A+I  
Sbjct: 262 LEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM 321

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G ++ A  +F +M  ++  TW A+I G   N + E+ +++   MIG+   P+  + 
Sbjct: 322 YSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTF 381

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
             VL  C+H   +  G++     F S   ++T  + P                       
Sbjct: 382 IGVLTACTHAGLVDKGRE----FFLS--MRETYNIAP----------------------- 412

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            +VV +  +I  + + GK  +AL   D+M    M P+S  +  LL AC   G  ++G
Sbjct: 413 -NVVHYGCIIDLFGRAGKITEALDAIDQMP---MTPNSTIWGTLLAACRVHGNSEIG 465



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 33/240 (13%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LS 212
           L  E      V WNA+I+G+       +       M   G  P   +  SVL  C     
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ------------ 260
            + LG QVH  V  S +  D      L+ MY +C D+E A KLF  +Q            
Sbjct: 160 DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS 219

Query: 261 -------------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
                               +D V+W AMI GY Q  +  +AL +F +M+   +  D  T
Sbjct: 220 GLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFT 279

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            V+++ AC   G +++G ++    ++  GI         ++D+  + G +  A+D+ K M
Sbjct: 280 MVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 21/285 (7%)

Query: 151 AEKLFDEMPTKNLVTWNA-MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
           A +L + +P + LV      +AGY               M+  G  P+A +   +L   +
Sbjct: 8   ARRLLEGIPRRCLVAAREDAVAGYAR-------------MLARGAMPDAYTFPPLLKAVA 54

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
             SS    + VH  V K  + ++    T L++ Y   GD   A  L  E +R   V WNA
Sbjct: 55  RGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNA 114

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-GLVDLGIQYFDSMVND 328
           +ISG+ +  +  +A   F  M   G  P  +T+V++L AC    G V LG+Q    +V  
Sbjct: 115 LISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS 174

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
            G+         +VD+      +  A  L   M  +   + + +LLS      R+D    
Sbjct: 175 -GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVS-WTSLLSGLTRLGRVD---- 228

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
            A +LF   P      +  + + Y    ++ +   +   M+ +NV
Sbjct: 229 EARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNV 273


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/452 (44%), Positives = 286/452 (63%), Gaps = 1/452 (0%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A +LF     +++V  TAMISGY + G+V+ A  +FD+M  K+LV W+AMI+GY E+   
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           ++ L L   M   GI+P+  ++ SV+  C+ L  L   K +H  V K+ L         L
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I MY KCG+L  A  +F ++Q ++V++W +MI+ +A HG    AL+ F +MKDE +KP+ 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TFV +L AC+HAGLV+ G + F SM N++ I  K +HY CMVDL GRA  L +A++L++
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP  P   I+G+L++AC++H   +L EFAA  +  L P +  G  VQL+NIYA  ++W 
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEP-DHDGALVQLSNIYAKDRRWQ 300

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           DV  +R  MK+  + K  G S IE+   V+EF   D+ H +   I+EKL E+ K +KL G
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y P+    L  V EE K++++L+HSEKLA+ +GL+    G+ IR+ KNLRVC DCH   K
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIK 420

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +S +   EIIVRD TRFHH+K G CSC DYW
Sbjct: 421 LVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 41/265 (15%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F ++  ++      MISG+ +   +  AR +F  M EK+ V WSAMISGY E  + 
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 118 DKAVELFK------VAP----VKSVVA------------W-----------------TAM 138
            +A+ LF       + P    + SV++            W                  A+
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I  Y K G +  A  +F++M ++N+++W +MI  +  +  A + LK    M    I+PN 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 199 SSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            +   VL  CSH   ++ G++    +  +  +         ++ ++ +   L DA +L  
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 258 EIQ-RKDVVTWNAMISGYAQHGKGE 281
            +    +VV W ++++    HG+ E
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENE 266


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 315/526 (59%), Gaps = 12/526 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS----- 109
           ++ A   F  +P K+  SWNT+I G V   +  +A  LFL M +  S + S M       
Sbjct: 182 MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRA 241

Query: 110 ----GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
               G I  G+   +  L K      V    A+I  Y K G ++ A+ +FD+MP K  V 
Sbjct: 242 SAGLGLIFAGRQLHSCSL-KTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG 300

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN++IAGY  + ++E+ L +   M   G++ +  + S ++  C+ L+SL+  KQ H  + 
Sbjct: 301 WNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLV 360

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +     D  A T L+ +Y K G +EDA  +F  +  K+V++WNA+I+GY  HG+G +A+ 
Sbjct: 361 RHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVE 420

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F++M  EGM P+ +TF+A+L AC+++GL D G + F+SM  D+ I  +  HY CM++LL
Sbjct: 421 MFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELL 480

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR G L EA  LIK  PFKP   ++  LL+ACRVHK  +L +FAA  L+ + P   +  Y
Sbjct: 481 GREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN-Y 539

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L NIY    + ++ A +  ++K   +  +P  SWIE+    + F SGD+ H +   I+
Sbjct: 540 VVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIY 599

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           +KL EL   +   GYVP  +F L  V E+ +E++LL+HSEKLAIAFGLI     TP+++ 
Sbjct: 600 QKLDELMLEISKHGYVPQXKFLLPDVDEQ-EERVLLYHSEKLAIAFGLINTSDWTPLQIV 658

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++ R+CGDCH A K I+ + +REI+VRD +RFHHFKDG+CSCGDYW
Sbjct: 659 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           ++K G +  A +LFDEMP KN+++WN +I G V+     +  +L  MM        +   
Sbjct: 176 HVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMF 235

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            +++   + L  +  G+Q+H    K+ +  D      LI MY KCG +EDA  +F ++  
Sbjct: 236 VTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPE 295

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           K  V WN++I+GYA HG  E+AL ++ +M+D G+K D+ TF  ++  C     ++   Q 
Sbjct: 296 KTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQA 355

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              +V  +G        T +VDL  + G++ +A  +   MP K
Sbjct: 356 HAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 17/276 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------LLNSDD 54
           M  KTTV WNS++AG+A   G  ++A  ++ ++    V   N   S I      L + + 
Sbjct: 293 MPEKTTVGWNSIIAGYALH-GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH 351

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     R     D  +   ++  + +   +  A+ +F  MP KN +SW+A+I+GY  
Sbjct: 352 AKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGN 411

Query: 114 CGQLDKAVELFKV----APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G+  +AVE+F+       V + V + A++S     G  D   ++F+ M   + +   AM
Sbjct: 412 HGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAM 471

Query: 170 IAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFK 226
               +      +GL  +   ++     +P  +  +++L  C    + +LGK    +L   
Sbjct: 472 HYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGM 531

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            P  +  +    L+++Y   G LE+A  +   ++R+
Sbjct: 532 GP--EKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRR 565



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 1/168 (0%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           ++ +  +++  C  L S++  K+V   +  S L  D      ++ M+ KCG + DA +LF
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLF 189

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E+  K++++WN +I G    G   +A RLF  M        S  FV ++ A    GL+ 
Sbjct: 190 DEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIF 249

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G Q     +   G+         ++D+  + G + +A  +  +MP K
Sbjct: 250 AGRQLHSCSLKT-GVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEK 296



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           N+ L     + G+++DA+ +FD +P  +V+S+N +++    N    V A + F+R+    
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG-YGNHGRGVEAVEMFERMLHEG 429

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKA 120
            + +  ++  ++S         +  ++F +M   + +      ++ MI      G LD+A
Sbjct: 430 MVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEA 489

Query: 121 VELFKVAPVKSVV-AWTAMISGYMKFGKVDL----AEKLFDEMPTKNLVTWNAMIAGYVE 175
             L K AP K  V  W A+++        +L    AEKL+   P K L  +  ++  Y  
Sbjct: 490 FALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEK-LSNYVVLLNIYNX 548

Query: 176 NSWAEDGLKLLRMMIGLGIR 195
           +   E+   +++ +   G+R
Sbjct: 549 SGRLEEAAAVIQTLKRRGLR 568


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 342/614 (55%), Gaps = 54/614 (8%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNSDDVVAAFDFFQRLP 66
           N N ++    K  G LK A  L    P P   ++ +++ SC   NS  +    D  +RL 
Sbjct: 49  NNNQLIQSLCKG-GNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNS--LSDGLDVHRRLV 105

Query: 67  I----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY--IECGQ--LD 118
                +D      +I+ + +  ++ +AR +F    E+    W+A+      + CG+  LD
Sbjct: 106 SSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLD 165

Query: 119 KAVEL-----------------------FKVAPVK----------------SVVAWTAMI 139
             V++                         V+P++                ++   T ++
Sbjct: 166 LYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLL 225

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPN 197
             Y KFG V  A  +F  MPTKN V+W+AMIA + +N      L+L ++M+       PN
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPN 285

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           + ++ +VL  C+ L++L+ GK +H  + +  L      L  LI+MY +CG++    ++F 
Sbjct: 286 SVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFD 345

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            ++ +DVV+WN++IS Y  HG G+KA+++F+ M  +G  P  I+F+ +L AC+HAGLV+ 
Sbjct: 346 NMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEE 405

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G   F+SM++ Y I    +HY CMVDLLGRA +L EA+ LI+ M F+P P ++G+LL +C
Sbjct: 406 GKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSC 465

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R+H  ++LAE A+  LF L P N AG YV LA+IYA  K W +   +   ++   + K+P
Sbjct: 466 RIHCNVELAERASTLLFELEPRN-AGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLP 524

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G SWIEV   V+ F S D  +P++  IH  L +L   MK  GYVP     L+ + EE KE
Sbjct: 525 GCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKE 584

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           +++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS    REI+VRD  RF
Sbjct: 585 RIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRF 644

Query: 558 HHFKDGTCSCGDYW 571
           HHFKDG CSCGDYW
Sbjct: 645 HHFKDGVCSCGDYW 658



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 80/299 (26%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF--------DKIPQPDVVSYNIMLSCILLNS 52
           M  K  V+W++++A FAK    +K A ELF        D +P   V   N++ +C  L  
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMK-ALELFQLMMLEAHDSVPN-SVTMVNVLQACAGL-- 299

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
               AA +               +I G++ +      R L   +P  N     A+I+ Y 
Sbjct: 300 ----AALE------------QGKLIHGYILR------RGLDSILPVLN-----ALITMYG 332

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            CG++     +F     + VV+W ++IS Y   G                          
Sbjct: 333 RCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHG-------------------------- 366

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK- 231
                + +  +++   MI  G  P+  S  +VL  CSH   ++ GK    ++F+S L K 
Sbjct: 367 -----FGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGK----ILFESMLSKY 417

Query: 232 ----DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQHGKGEKALR 285
                      ++ +  +   L++A KL  ++  +   T W +++     H   E A R
Sbjct: 418 RIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAER 476


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/525 (40%), Positives = 299/525 (56%), Gaps = 10/525 (1%)

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGY 111
             AA   F R+  +D  +WN++I+G+ Q  +   A D+F    L+    ++ +   ++   
Sbjct: 482  TAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 112  IECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTW 166
                 LD+       + K+          A+I  Y K G +  AE LF++   TK+ VTW
Sbjct: 542  ALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 167  NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            N +IA Y++N  A++ +     M      PN+ +  SVL   ++L++ + G   H  + +
Sbjct: 602  NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 227  SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                 +T     LI MY KCG L  + KLF E+  KD V+WNAM+SGYA HG G++A+ L
Sbjct: 662  MGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721

Query: 287  FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            F  M++  ++ DS++FV++L AC H GLV+ G + F SM + Y I    +HY CMVDLLG
Sbjct: 722  FSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 781

Query: 347  RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
            RAG   E +  IK MP +P   ++G LL +CR+H  + L E A  +L  L P N A  +V
Sbjct: 782  RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAH-FV 840

Query: 407  QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
             L++IYA   +W D  + R  M +  + K PG SW+E+   VH FR GD+ HP+L S+H 
Sbjct: 841  VLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHL 900

Query: 467  KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
                L ++M+  GYVPD    L  V EE KE  L  HSE+LAI F L+  P G+ I++ K
Sbjct: 901  LWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVK 960

Query: 527  NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            NLRVC DCH  TK+IS I  R IIVRD TRFHHF+DG CSC DYW
Sbjct: 961  NLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 214/472 (45%), Gaps = 80/472 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI------------- 67
           G LK A+E+FDK+P+ DVV++N M++  L  S+D   A DFF+ + +             
Sbjct: 178 GDLKRAREVFDKMPKRDVVAWNAMIAG-LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNL 236

Query: 68  ----------------------KD--TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS 103
                                 +D  +A  N +I  + +  ++  AR +F  M +++ VS
Sbjct: 237 FPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 104 WSAMISGYIECGQLDKAVELF-----------KVAPVKSVVAW----------------- 135
           W  M++GY   G   + +ELF           KV+ V + +A                  
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 136 -----------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                      T ++  Y K G+ + A++LF  +  ++LV W+A+IA  V+  + E+ L 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L + M    ++PN  +L S+L  C+ LS L+LGK +H    K+ +  D +  T L+SMY 
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYA 476

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG    A   F  +  +D+VTWN++I+GYAQ G    A+ +F K++   + PD+ T V 
Sbjct: 477 KCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVG 536

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           ++ AC     +D G      ++   G  +       ++D+  + G L  A  L  K  F 
Sbjct: 537 VVPACALLNDLDQGT-CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFT 595

Query: 365 PQPAIFGTLLSAC--RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
                +  +++A     H +  ++ F  M L N +P +     V  A  Y A
Sbjct: 596 KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLA 647



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F   P      WN+MI  + + K   +A +++  M EK    +  +++ ++        L
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNL 145

Query: 118 DKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            + V    E+ +    + V     ++  Y K G +  A ++FD+MP +++V WNAMIAG 
Sbjct: 146 QEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGL 205

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++    + +   R M  +G+ P++ SL ++  G   LS+++L + +H  VF+      +
Sbjct: 206 SQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--SS 263

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI +Y KCGD++ A ++F ++  +D V+W  M++GYA +G   + L LFDKMK  
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 323

Query: 294 GMKPDSITFVALLLA 308
            ++ + ++ V+  LA
Sbjct: 324 NVRINKVSAVSAFLA 338



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I+ Y  F K DLA  +FD  P  + + WN+MI  Y  +    + L++   M+  G+ 
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  + + VL  C+   +LQ G   H  + +  L +D      L+ MY K GDL+ A ++
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           F ++ ++DVV WNAMI+G +Q     +A+  F  M+  G++P S++ + L 
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C HL+ L    Q+H  +  S   K   ++T LI++Y      + A  +F       
Sbjct: 38  LLSSCKHLNPLL---QIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNPS 93

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
            + WN+MI  Y +  +  +AL ++  M ++G++PD  TF  +L AC  A  +  G+ +F 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
             ++  G+         +VD+  + G L  A ++  KMP +   A    +    +     
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPC 212

Query: 384 DLAE-FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
           +  + F +M L  + P++     V L N++  + K  ++   R
Sbjct: 213 EAVDFFRSMQLVGVEPSS-----VSLLNLFPGICKLSNIELCR 250



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 15/211 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFD 60
           +  T+  NS++  +AK  G+L  +++LF+++   D VS+N MLS   +  + D  +A F 
Sbjct: 665 LSNTLVGNSLIDMYAKC-GQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 723

Query: 61  FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIEC 114
             Q   ++ D+ S+ +++S       + + R +F +M +K  +      ++ M+      
Sbjct: 724 LMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRA 783

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMI 170
           G  D+ +   KV PV+     W A++        V L E   D   ++  +N   +  + 
Sbjct: 784 GLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 843

Query: 171 AGYVENS-WAEDGLKLLRMM-IGLGIRPNAS 199
           + Y ++  WA+ G    +M  +GL   P  S
Sbjct: 844 SIYAQSGRWADAGKARSKMNDLGLKKTPGCS 874


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 314/537 (58%), Gaps = 41/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV------------ 121
           N++I  + +   +A AR +F  MP ++  SW+++I+GY +    D+A+            
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFK 162

Query: 122 -------ELFKVAPVKS--------------------VVAWTAMISGYMKFGKVDLAEKL 154
                   L K A   +                    V   +A++  Y + G++D+A  +
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD++ +KN V+WNA+IAG+      E  L +   M   G      + SSV    + + +L
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GK VH  + KS           ++ MY K G + DA K+F  + +KDVVTWN+M++ +
Sbjct: 283 EQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAF 342

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           AQ+G G +A+  F++M+  G+  + ITF+++L AC+H GLV  G QYFD M+ +Y +  +
Sbjct: 343 AQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPE 401

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            DHY  +VDLLGRAG L +A+  I KMP KP  A++G LL +CR+HK   + +FAA ++F
Sbjct: 402 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVF 461

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L+P +  G  V L NIYA+  +WD  AR+R  MK   V K P  SW+E+   VH F + 
Sbjct: 462 ELDPDDT-GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAN 520

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  HP    I++K +E+  +++ AGYVP+ ++ L  V E+ ++  L +HSEK+A+AF LI
Sbjct: 521 DDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALI 580

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +PLG  IR+ KN+R+CGDCH A +YIS + KREI+VRDT RFHHF  G+CSCGDYW
Sbjct: 581 NMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 1/231 (0%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           SV    ++I  Y K G V  A ++FD MP +++ +W ++IAGY +N   ++ L LL  M+
Sbjct: 98  SVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML 157

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
               +PN  + +S+L      +S  +G+Q+H L  K     D    + L+ MY +CG ++
Sbjct: 158 RGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMD 217

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A  +F +++ K+ V+WNA+I+G+A+ G GE  L +F +M+  G +    T+ ++  A  
Sbjct: 218 MAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA 277

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             G ++ G      M+   G          ++D+  ++G +++A  +  ++
Sbjct: 278 GIGALEQGKWVHAHMIKS-GERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 9/229 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A   F +L  K+  SWN +I+GF +K +      +F  M     E    ++S++ S    
Sbjct: 219 AIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAG 278

Query: 114 CGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G L++       + K     S      ++  Y K G +  A K+FD +  K++VTWN+M
Sbjct: 279 IGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSM 338

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           +  + +     + +     M   G+  N  +  S+L  CSH   ++ GKQ   ++ +  L
Sbjct: 339 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNL 398

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
             +      ++ +  + G L DA     ++  K     W A++     H
Sbjct: 399 EPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S++  C+   SL   + +H  +  S           LI +YCKCG + DA ++F  +  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D+ +W ++I+GYAQ+   ++AL L   M     KP+  TF +LL A   +    +G Q  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI- 187

Query: 323 DSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFK 364
                 + +  K D +      + ++D+  R G++  A+ +  ++  K
Sbjct: 188 ------HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK 229


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 318/539 (58%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L +   +  A   F+++    T  +NTMI G+V   NM  A  L+  M E+  
Sbjct: 22  NLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGV 81

Query: 100 --NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             ++ ++ A+         +++ +++    FK      +    ++I+ Y K GK++L+  
Sbjct: 82  ESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCS 141

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLS 212
           +F+ M  +++ +W+A+IA +       + L +   M   G  RP  S L SVL  C+HL 
Sbjct: 142 VFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLG 201

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L LG+  H  + ++    +    T LI MY KCG +E    LF  + +K+ ++++ MI+
Sbjct: 202 ALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMIT 261

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG+G +AL++F  M +EG+KPD + ++ +L ACNHAGLVD G+Q F+ M  ++GI 
Sbjct: 262 GLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIE 321

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY C+V L+GRAG L +A++ I+ MP KP   ++  LLSAC+ H  L++ E AA +
Sbjct: 322 PTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKS 381

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           L  LN +N  G YV L+N+YA  K+W+DVA+IR  M      + PG+S ++V   +++F 
Sbjct: 382 LGELNSSN-PGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFV 440

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D  HP+   ++E + ++E ++K  GY PD    L  V EE K Q L  HS+KLA+AF 
Sbjct: 441 SQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFA 500

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI    G PIR+ +NLR+C DCH  TK IS I +REI VRD  RFHHFKDGTCSC DYW
Sbjct: 501 LIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/525 (39%), Positives = 316/525 (60%), Gaps = 10/525 (1%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMI-- 108
           VV A   F ++  KD  SW ++I+G+ Q    A+A  L   M +     N  ++++++  
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 109 -SGYIECGQLDKAVEL-FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
              Y + G   +   L  K    + V   +A++  Y + GK+D+A  +FD++ +KN V+W
Sbjct: 162 AGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSW 221

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NA+I+G+      E  L +   M   G      + SS+  G + + +L+ GK VH  + K
Sbjct: 222 NALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVK 281

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S           ++ MY K G + DA K+F  +  KD+VTWN+M++ +AQ+G G++A+  
Sbjct: 282 SRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSH 341

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F++M+  G+  + ITF+ +L AC+H GLV  G  YFD M+ +Y +  + +HY  +VDLLG
Sbjct: 342 FEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLG 400

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG L  A+  I KMP +P  A++G LL+ACR+HK   + +FAA ++F L+P ++ G  V
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDS-GPPV 459

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L NIYA+   WD  AR+R  MK   V K P  SW+E+G  VH F + D  HP    I++
Sbjct: 460 LLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYK 519

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
              E+  +++  GYVPD+++ L  V E+ +E  L +HSEK+A+AF LI++P G  IR+ K
Sbjct: 520 MWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMK 579

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           N+R+CGDCH A KYIS + +REI+VRDT RFHHF +G+CSCGDYW
Sbjct: 580 NIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++I  Y K G V  A K+FD+M  K++V+W ++IAGY +N    + + LL  M+    +
Sbjct: 90  NSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFK 149

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + +S+L      +   +G Q+H L  K    +D    + L+ MY +CG ++ A  +
Sbjct: 150 PNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAV 209

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++  K+ V+WNA+ISG+A+ G GE AL +F +M+  G +    T+ ++      +GL 
Sbjct: 210 FDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIF-----SGLA 264

Query: 316 DLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKM 361
            +G       V+ + + ++          M+D+  ++G +++A  + +++
Sbjct: 265 GIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERV 314



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P      + +  C+   +L   +++H  +  S    D      LI +YCKCG + +A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K+F ++++KD+V+W ++I+GYAQ+    +A+ L   M     KP+  TF +LL A     
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFK 364
              +G Q        + +A K D +      + ++D+  R GK+  A  +  K+  K
Sbjct: 167 DSGIGGQI-------HALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 41/266 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK+  A  +FDK+   + V                                SWN +ISGF
Sbjct: 201 GKMDMATAVFDKLDSKNGV--------------------------------SWNALISGF 228

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKA--VELFKVAPVKSVVA 134
            +K +   A  +F  M     E    ++S++ SG    G L++   V    V   + + A
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTA 288

Query: 135 WTA--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           +    M+  Y K G +  A K+F+ +  K+LVTWN+M+  + +    ++ +     M   
Sbjct: 289 FVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI  N  +   +L  CSH   ++ GK    ++ +  L  +      ++ +  + G L  A
Sbjct: 349 GIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408

Query: 253 CKLFLEI-QRKDVVTWNAMISGYAQH 277
                ++        W A+++    H
Sbjct: 409 LVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/570 (38%), Positives = 316/570 (55%), Gaps = 14/570 (2%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA- 71
           L  F    G    A  +F  +P  DVVS+N M++   L      A    FQ + +KD   
Sbjct: 214 LINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALL-LFQEMEMKDVKP 272

Query: 72  ---SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVEL 123
              +  +++S   +K ++   R    +  E N  +      +AM+  Y++CG ++ A +L
Sbjct: 273 NVITMVSVLSACAKKIDLEFGR-WICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDL 331

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F     K +V+WT M+ G+ K G  D A  +FD MP K    WNA+I+ Y +N      L
Sbjct: 332 FNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVAL 391

Query: 184 KLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            L   M +    +P+  +L   L   + L ++  G  +H  + K  +  +    T L+ M
Sbjct: 392 SLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDM 451

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG+L  A ++F  ++RKDV  W+AMI   A +G+G+ AL LF  M +  +KP+++TF
Sbjct: 452 YAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTF 511

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             +L ACNHAGLV+ G Q F+ M   YGI  +  HY C+VD+ GRAG L +A   I+KMP
Sbjct: 512 TNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMP 571

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
             P  A++G LL AC  H  ++LAE A  NL  L P N  G +V L+NIYA    W+ V+
Sbjct: 572 IPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCN-HGAFVLLSNIYAKAGDWEKVS 630

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            +R  M++++V K P  S I+V  +VHEF  GD  HP    I+ KL E+ ++ K  GY P
Sbjct: 631 NLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKP 690

Query: 483 DLEFALHAVGEE-VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           D+   L    E+ + EQ L  HSEKLAIAFGLI      PIR+ KN+R+CGDCH   K +
Sbjct: 691 DMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLV 750

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  R+I++RD  RFHHF+ G CSC DYW
Sbjct: 751 SQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 154/351 (43%), Gaps = 42/351 (11%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVSWSAM 107
           ++ A + F ++P  +   WNT+I G+    +  ++  +FL M       P K +  +   
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181

Query: 108 ISGYIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            +  ++   L   +   + K +    +    ++I+ Y   G  DLA ++F  MP K++V+
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVS 241

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNAMI  +      +  L L + M    ++PN  ++ SVL  C+    L+ G+ +   + 
Sbjct: 242 WNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIE 301

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT------------------- 266
            +   +       ++ MY KCG + DA  LF ++  KD+V+                   
Sbjct: 302 NNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHC 361

Query: 267 ------------WNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAG 313
                       WNA+IS Y Q+GK   AL LF +M+  +  KPD +T +  L A    G
Sbjct: 362 IFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLG 421

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            +D G  +    +  + I       T ++D+  + G L +A+++   +  K
Sbjct: 422 AIDFG-HWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERK 471



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 39/210 (18%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDLEDACKLFLEIQRKDVVTWNA 269
           +++QL KQ+H  + ++    D    + L++ Y    C  L  A  +F +I + ++  WN 
Sbjct: 84  NTMQL-KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNT 142

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLG---------- 318
           +I GYA      ++  +F  M     + P+  TF  L  A +   ++ LG          
Sbjct: 143 LIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKA 202

Query: 319 -----IQYFDSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLI 358
                +   +S++N YG +  PD                +  M++     G   +A+ L 
Sbjct: 203 SLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLF 262

Query: 359 KKMPF---KPQPAIFGTLLSACRVHKRLDL 385
           ++M     KP      ++LSAC   K++DL
Sbjct: 263 QEMEMKDVKPNVITMVSVLSACA--KKIDL 290


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 310/528 (58%), Gaps = 17/528 (3%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-----PEKNSVSWSAMIS-G 110
           ++   F   P K   +W+++IS F Q      + + F  M     P  + +  SA  S G
Sbjct: 73  SSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCG 132

Query: 111 YIECGQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            +    + K +  F  K A    +   +++I  Y K G +  A  +FDEMP +N+V+W+ 
Sbjct: 133 ILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSG 192

Query: 169 MIAGYVENSWAEDGLKLLRMMI----GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +I GYV+    ++ L+L +  +      G+  N  +LSSVL  C   + LQ+G+ +H L 
Sbjct: 193 LIYGYVQLGEDDESLRLFKRFLVEEENEGV--NDFTLSSVLRVCGGSTLLQMGRLIHGLS 250

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
           FK+         + LIS+Y KCG +E+A  +F E+  +++  WNAM+   AQH   +K  
Sbjct: 251 FKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTF 310

Query: 285 RLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
            LFDKMK   GMK + ITF+ +L AC+HAGLV+ G  YF+ ++ DYGI     HY+ MVD
Sbjct: 311 ELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFE-LMKDYGIEPGTQHYSTMVD 369

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAGKL +AV LI++MP +P  +++G LL+ CR+H    LA + A  +  L    ++G
Sbjct: 370 LLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSV-SSG 428

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            +V L+N YAA  +W++ A+ R  M++  + K  G SW+E G  +H F +GDR H + V 
Sbjct: 429 LHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVE 488

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I++KL EL + M  AGYV D  F L  V  E K + + +HSE+LAIAFG I  P G PIR
Sbjct: 489 IYDKLDELGEEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIR 548

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           V KNLRVCGDCH A K+IS    R IIVRD  RFH F+DG C+CGDYW
Sbjct: 549 VMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 12/253 (4%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVSWSAMISG 110
           D+  A + F  +P ++  SW+ +I G+VQ     ++  L   FL   E   V+   + S 
Sbjct: 171 DICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSV 230

Query: 111 YIECG-----QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
              CG     Q+ + +    FK +   S    +++IS Y K G V+ A  +F+E+  +NL
Sbjct: 231 LRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNL 290

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
             WNAM+    +++  +   +L   M  + G++ N  +   VL  CSH   ++ GK   +
Sbjct: 291 GMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFE 350

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQHGKGE 281
           L+    +   T   + ++ +  + G L DA KL  E+  +   + W A+++G   HG  +
Sbjct: 351 LMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTK 410

Query: 282 KALRLFDKMKDEG 294
            A  + D++ + G
Sbjct: 411 LASYVADRVSELG 423



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P   +L + LL  +   SL  G Q+H  + K  L         LI+ Y K      + +
Sbjct: 17  QPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQ 76

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F +   K   TW+++IS +AQ+     +L  F  M  +G+ PD   F +   +C     
Sbjct: 77  IFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSS 136

Query: 315 VDLGIQYFDSMVNDYGI--AAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 364
           + +       M++ + +  A   D +  + ++D+  + G +  A ++  +MP++
Sbjct: 137 LPVA-----KMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYR 185


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/562 (38%), Positives = 329/562 (58%), Gaps = 16/562 (2%)

Query: 22  KLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           KLK  + +   I     + D+V  N +L+ +      +  A D F ++P KD  SW  +I
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILN-MYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178

Query: 78  SGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELF--KVAPV 129
           SG+ Q    ++A  LF  M      P + ++S     SG        + +  F  K    
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            +V   ++++  Y ++  +  A+ +F+ +  KN+V+WNA+IAG+      E  ++L   M
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM 298

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +  G  P   + SSVL  C+   SL+ GK VH  V KS           LI MY K G +
Sbjct: 299 LRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 357

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +DA K+F  + ++D+V+WN++ISGYAQHG G +AL+LF++M    ++P+ ITF+++L AC
Sbjct: 358 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 417

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H+GL+D G QY+  ++  + I A+  H+  +VDLLGRAG+L EA   I++MP KP  A+
Sbjct: 418 SHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 476

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G LL ACR+HK +DL  +AA  +F L+P ++ G +V L+NIYA+  +  D A++R  MK
Sbjct: 477 WGALLGACRMHKNMDLGVYAAEQIFELDPHDS-GPHVLLSNIYASAGRLSDAAKVRKMMK 535

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
           E+ V K P  SW+E+   VH F + D  HP    I    +++  ++K  GYVPD    L 
Sbjct: 536 ESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLF 595

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            + ++ +E  L +HSEKLA+AF ++K P G  IR+ KN+R+CGDCH A K+ S +  REI
Sbjct: 596 FMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREI 655

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           IVRDT RFHHF  G CSC DYW
Sbjct: 656 IVRDTNRFHHFLHGMCSCRDYW 677



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P  +  S +L  C++L  L+ G+ +H  +  S    D   L  +++MY KCG LE+A 
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            LF ++  KD+V+W  +ISGY+Q G+  +AL LF KM   G +P+  T  +LL A    G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG-TG 219

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             D   +   +    YG        + ++D+  R   + EA
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA 260



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 150/338 (44%), Gaps = 53/338 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           +  K  V+WN+++AG A+ +G+ +    LF ++     +P   +Y+ +L+C    S   +
Sbjct: 267 LAAKNVVSWNALIAGHAR-KGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACA---SSGSL 322

Query: 57  AAFDFFQRLPIKDTAS-----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
               +     IK          NT+I  + +  ++  A+ +F  + +++ VSW+++ISGY
Sbjct: 323 EQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGY 382

Query: 112 IECGQLDKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            + G   +A++LF      KV P  + + + ++++     G +D  +  F+ M    +  
Sbjct: 383 AQHGLGAEALQLFEQMLKAKVQP--NEITFLSVLTACSHSGLLDEGQYYFELMKKHKI-- 438

Query: 166 WNAMIAGYV-------ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             A +A +V             +  K +  M    I+P A+   ++L  C    ++ LG 
Sbjct: 439 -EAQVAHHVTVVDLLGRAGRLNEANKFIEEM---PIKPTAAVWGALLGACRMHKNMDLGV 494

Query: 219 QVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLF-----LEIQRKDVVTW----- 267
              + +F+  P   D+     L ++Y   G L DA K+        ++++   +W     
Sbjct: 495 YAAEQIFELDP--HDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIEN 552

Query: 268 --NAMISGYAQHGKGEKALRLFD----KMKDEGMKPDS 299
             +  ++    H   E+  R+++    K+K+ G  PD+
Sbjct: 553 EVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDT 590


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 301/531 (56%), Gaps = 16/531 (3%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSA 106
           N DD +  FD    +P K+  SW  +I+G++   +  +A   F  + E     +S S   
Sbjct: 164 NFDDALKVFD---DIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVK 220

Query: 107 MISGYIECGQ------LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
           +++     G       +D+ +    +   ++V   T+++  Y+K G ++ A  +F  MP 
Sbjct: 221 VLAACARLGDCTSGEWIDRYISDSGMG--RNVFVATSLLDMYVKCGNLERANLIFSAMPE 278

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           K++V+W+ MI GY  N   +  L L   M    ++P+  ++  VL  C+ L +L LG   
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
             L+ ++    +    T LI MY KCG +  A ++F  +++KD V WNAM+ G + +G  
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHA 398

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +    LF  ++  G++PD  TF+ LL  C H G V+ G Q+F++M   + +    +HY C
Sbjct: 399 KAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC 458

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDLLGRAG L EA  LI  MP KP   ++G LL  C++HK   LAE     L  L P N
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWN 518

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
            +G YVQL+NIY+   +W++  +IR +MKE  + K+   SWIE+  +VHEF  GD+ H  
Sbjct: 519 -SGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWL 577

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I+ KL EL + +K  G+VP  EF L  + EE KE  L +HSEKLA+AFGLI  P   
Sbjct: 578 SEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNH 637

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IRV KNLRVCGDCH A K IS I KREII+RDT RFH F DG+CSC DYW
Sbjct: 638 VIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 9/302 (2%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ-LDKAVEL------F 124
           WNTMI G V K     A  L+ +M     +  +  I   ++ C + LD  + L       
Sbjct: 82  WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K      V   T+++S Y+K    D A K+FD++P KN+V+W A+I GY+ +    + + 
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
             + ++ +G++P++ SL  VL  C+ L     G+ + + +  S + ++    T L+ MY 
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG+LE A  +F  +  KD+V+W+ MI GYA +G  ++AL LF +M+ E +KPD  T V 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC   G +DLGI +  S+++     + P   T ++D+  + G + +A ++   M  K
Sbjct: 322 VLSACATLGALDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKK 380

Query: 365 PQ 366
            +
Sbjct: 381 DR 382



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 147/326 (45%), Gaps = 48/326 (14%)

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           + FG  + ++ +F ++   N+  WN MI G V     +D + L   M G G  PN  ++ 
Sbjct: 59  LDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIP 118

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+    ++LG ++H L+ K+    D    T L+S+Y KC + +DA K+F +I  K
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK 178

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           +VV+W A+I+GY   G   +A+  F K+ + G+KPDS + V +L AC   G    G ++ 
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWI 237

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-----------------P 365
           D  ++D G+       T ++D+  + G L  A  +   MP K                 P
Sbjct: 238 DRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLP 297

Query: 366 QPAI-----------------FGTLLSACRVHKRLDLAEFAA----MNLFNLNPA----- 399
           Q A+                    +LSAC     LDL  +A+     N F  NP      
Sbjct: 298 QQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTAL 357

Query: 400 ----NAAGCYVQLANIYAAMKKWDDV 421
               +  G   Q   I+ AMKK D V
Sbjct: 358 IDMYSKCGSVTQAWEIFTAMKKKDRV 383



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 142/351 (40%), Gaps = 91/351 (25%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAF----------DFFQ--------- 63
           DA ++FD IP  +VVS+  +++  + +    + + AF          D F          
Sbjct: 167 DALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA 226

Query: 64  RLPIKDTASW-----------------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
           RL    +  W                  +++  +V+  N+ +A  +F AMPEK+ VSWS 
Sbjct: 227 RLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWST 286

Query: 107 MISGYIECGQLDKAVELF------KVAP-------------------------------- 128
           MI GY   G   +A++LF       + P                                
Sbjct: 287 MIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNE 346

Query: 129 -VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            + + V  TA+I  Y K G V  A ++F  M  K+ V WNAM+ G   N  A+    L  
Sbjct: 347 FLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFS 406

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C-- 244
           ++   GIRP+ ++   +L GC+H   +  G+Q    +      K   +LTP I  Y C  
Sbjct: 407 LVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNM------KRVFSLTPSIEHYGCMV 460

Query: 245 ----KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKM 290
               + G L +A +L   +  K + V W A++ G   H     A ++  K+
Sbjct: 461 DLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKL 511



 Score = 42.0 bits (97), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K +H  + +  L +D   L  ++      G    +  +F +++  ++  WN MI G    
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN---DYGIAAK 334
              + A+ L+  M+  G  P++ T   +L AC     V LG++    +V    D+ +  K
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               T ++ L  +     +A+ +   +P K
Sbjct: 153 ----TSLLSLYVKCDNFDDALKVFDDIPDK 178


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/418 (44%), Positives = 269/418 (64%), Gaps = 1/418 (0%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +FDEMP +++VTW +++ G          ++    M+  G++P+  ++ + L  C+  ++
Sbjct: 104 VFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTA 163

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L LG+ VH    +  L    +    L+SMY K G L DA  +F  +  +  +TW A+I G
Sbjct: 164 LDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVG 223

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           YAQ+G+G ++L ++  M   G +PD +TF+ LL AC+HAGLVD G  +F SMV  YGIA 
Sbjct: 224 YAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAP 283

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
            PDHY CMVDLLGRAG+L EA+DL+ +   +    ++ +LL ACRVH+  +LAE AA  +
Sbjct: 284 GPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAERAAEMV 343

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
           + L+PA+A   YV L+N+Y+  ++W DVARIR  MK   V K PG SW+ V  + H F  
Sbjct: 344 WRLDPADAVP-YVMLSNLYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNGITHLFHV 402

Query: 454 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 513
            DR HP    I+ K++E+ +R+++ GYVPD ++AL     E +++ L +HSE+LA+AFGL
Sbjct: 403 EDRDHPRAAEIYRKVEEMTERIRVEGYVPDTDWALQDEVPEWRQRGLAYHSERLAVAFGL 462

Query: 514 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + VP   PIRVFKNLRVCGDCH A K ++ +  REII+RD   FHH KDG CSCGDYW
Sbjct: 463 LAVPAAAPIRVFKNLRVCGDCHTAIKMVAKVYGREIILRDANCFHHMKDGECSCGDYW 520



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 14/236 (5%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW---SAMISGYI 112
           F  +P +D  +W ++++G  +      A   +  M      P++ +V     S   S  +
Sbjct: 105 FDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTAL 164

Query: 113 ECGQ-LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           + G+ +  A     + P +SV    +++S Y K G +  A  +FD MP +  +TW A+I 
Sbjct: 165 DLGRSVHAAAVRLGLRPFRSVE--NSLVSMYAKTGALRDARAVFDAMPARCTITWTALIV 222

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLC 230
           GY +N      L++   M+  G RP+  +   +L  CSH   +  G+     +V    + 
Sbjct: 223 GYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIA 282

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
                   ++ +  + G L++A  L      + D   W +++     H   E A R
Sbjct: 283 PGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAER 338



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 26/216 (12%)

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVH 221
           +V +NA I+           L L R M G G+R +  +L  +L   + L    +    +H
Sbjct: 9   VVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAAQLRGPPEAVAALH 68

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGD--LEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
            L+ ++ L         L+  Y +        A  +F E+ R+DVVTW ++++G A+ G 
Sbjct: 69  ALLLRAGLAPHLHVANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGA 128

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVND 328
              A+R +  M   G++PD     A L +C            HA  V LG++ F S+ N 
Sbjct: 129 HGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENS 188

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                       +V +  + G L +A  +   MP +
Sbjct: 189 ------------LVSMYAKTGALRDARAVFDAMPAR 212


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/439 (47%), Positives = 267/439 (60%), Gaps = 13/439 (2%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F   +    LF ++   N+  WN MI G V N   +D ++   +M   G  PN  +   V
Sbjct: 59  FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFV 118

Query: 205 LLGCSHLSSLQLGKQVHQLVFKS---------PLCKDTTALTPLISMYCKCGDLEDACKL 255
           L  C+ L  LQLG ++H LV K           + ++    T L+ MY KCG++E A  +
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSV 178

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE---GMKPDSITFVALLLACNHA 312
           F  +  KD+V+W AMI GYA +G  ++A+ LF +M+ E   G+KPD  TF+ LL  C HA
Sbjct: 179 FDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHA 238

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD G +YF+SM   + +    +HY CMVDLLGRAG L EA  LI+ MP +    ++G 
Sbjct: 239 GLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGA 298

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL ACR+H+   LAE A   L  L P N+ G YV L+NIY+A  KWD+ A++RLSM E  
Sbjct: 299 LLGACRIHRDTQLAELALKQLIELEPWNS-GNYVLLSNIYSANLKWDEAAKVRLSMNEKR 357

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K PG SWIEV  +VHEF  GD+ HP    I+ KL EL K+MK+AGYVP  +F L  + 
Sbjct: 358 IQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIE 417

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE KE  L  HSEKLAIAFGLI       IRV KNLRVCGDCH A K IS+I  REI VR
Sbjct: 418 EEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVR 477

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFH F++G+CSC DYW
Sbjct: 478 DNNRFHCFREGSCSCNDYW 496



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 35/264 (13%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++L C    SD     F  F ++   +   WNTMI G V       A + +  M  +  
Sbjct: 50  NMILRCSFDFSDTNYTRF-LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF 108

Query: 100 --NSVSWSAMISGYIECGQLDKAVEL-------------FKVAPVKSVVAWTAMISGYMK 144
             N+ ++  ++        L   V++              ++  V++V   T+++  Y K
Sbjct: 109 LPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAK 168

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI---GLGIRPNASSL 201
            G ++ A  +FD MP K++V+W AMI GY  N   ++ + L   M     LGI+P+ ++ 
Sbjct: 169 CGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTF 228

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACK 254
             +L GC+H   +  G++    +++        +LTP I  Y C      + G L++A +
Sbjct: 229 IGLLCGCTHAGLVDEGRRYFNSMYR------FFSLTPSIEHYGCMVDLLGRAGLLDEAHQ 282

Query: 255 LFLEI-QRKDVVTWNAMISGYAQH 277
           L   +    + + W A++     H
Sbjct: 283 LIRNMPMEANAIVWGALLGACRIH 306



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           LC D   L  ++       D      LF +I++ ++  WN MI G   +   + A+  + 
Sbjct: 42  LCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYG 101

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY--------GIAAKPDHYTC 340
            M+ EG  P++ TF  +L AC     + LG++    +V ++        G+       T 
Sbjct: 102 LMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTS 161

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFK 364
           +VD+  + G + +A  +   MP K
Sbjct: 162 LVDMYAKCGNMEKARSVFDGMPEK 185


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/583 (37%), Positives = 337/583 (57%), Gaps = 23/583 (3%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCI----LLNSDDVVAA 58
            V WNS+L+G+A  +   +DA  +  +I     +P+  S + +L  +    L+     +  
Sbjct: 728  VTWNSLLSGYA-SKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHG 786

Query: 59   FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            +    +L   D     T+I  +++   +  AR +F  M EKN V+W+++ISG    G L 
Sbjct: 787  YVIRNQLWY-DVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLK 845

Query: 119  KAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMI 170
            +A  L     K     + V W +++SGY  +GK + A  +  +M       N+V+W A++
Sbjct: 846  EAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAIL 905

Query: 171  AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL--LGCSHLSSLQLGKQVHQLVFKSP 228
            +G  +N    +GLK+   M   G+ PN++++SS+L  LGC  LS L  GK+VH    K+ 
Sbjct: 906  SGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGC--LSLLYSGKEVHSFCLKNN 963

Query: 229  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
            L +D    T L+ MY K GDL+ A ++F  I+ K + +WN MI GYA   +GE+ + +F+
Sbjct: 964  LTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFN 1023

Query: 289  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
             M + G++PD+ITF ++L  C ++GLV  G +YFD M + YG+    +H +CMV+LLGR+
Sbjct: 1024 AMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRS 1083

Query: 349  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            G L EA D I+ MP KP   I+G  LS+C++H+ L+LAE A   L  L P N+A  Y+ +
Sbjct: 1084 GYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSAN-YMMM 1142

Query: 409  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
             N+Y+ + +W DV RIR SM  N V     +SWI++   VH F +  + HP+   I+ +L
Sbjct: 1143 INLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYFEL 1202

Query: 469  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
             +L   MK +GY+PD       V E  KE+LL+ H+EKLA+ +GLIK     PIRV KN 
Sbjct: 1203 YKLVSEMKKSGYMPDTRCIHQNVSESEKEKLLMGHTEKLAMTYGLIKKKGIAPIRVVKNT 1262

Query: 529  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             +C DCH   KYIS +  REI++++  R HHF+DG CSC + W
Sbjct: 1263 NLCSDCHTVAKYISVLRNREIVLQEGARVHHFRDGKCSCNNSW 1305



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 192/383 (50%), Gaps = 49/383 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L GF  +   L  A ++FD++P+ D +++N ++  + L S +   A   F+ +     
Sbjct: 564 SALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIV-MVNLQSGNWEKAVKLFRVMRFSGA 622

Query: 71  ASWNTMISGFVQ----KKNMAKARDL---FLAMPEKNSVSW-SAMISGYIECGQLDKAVE 122
            ++++ +   +Q    K+  A+ R +    L +  +++VS  +++I  Y   G+L+ + +
Sbjct: 623 KAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRK 682

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT----KNLVTWNAMIAGYVENSW 178
           +F     +++ +W +++S Y + G VD A  L DEM T     ++VTWN++++GY   + 
Sbjct: 683 VFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKAL 742

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
           + D + +L+ +   G++PN SS+SS+L        ++LGK +H  V ++ L  D    T 
Sbjct: 743 SRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETT 802

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDV---------------------------------- 264
           LI MY K G L  A  +F  +  K++                                  
Sbjct: 803 LIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSN 862

Query: 265 -VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
            VTWN+++SGYA  GK EKAL +  KMK  G++P+ +++ A+L  C+  G    G++ F 
Sbjct: 863 AVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFL 922

Query: 324 SMVNDYGIAAKPDHYTCMVDLLG 346
            M  + G++      + ++ +LG
Sbjct: 923 KM-QEEGVSPNSATISSLLRILG 944



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 32/301 (10%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV----VSYNIMLSCILL--NSDD 54
            M+ K  V WNS+++G +   G LK+A+ L  ++ +  +    V++N ++S       ++ 
Sbjct: 823  MDEKNIVAWNSLISGLSYT-GLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEK 881

Query: 55   VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +A     ++  ++ +  SW  ++SG  +  N      +FL M E+     SA IS  + 
Sbjct: 882  ALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLR 941

Query: 114  ---CGQL---DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
               C  L    K V  F  K    +     TA++  Y K G +  A ++F  +  K L +
Sbjct: 942  ILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLAS 1001

Query: 166  WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            WN MI GY      E+G+ +   M+  GI P+A + +SVL  C +   ++ G +   L+ 
Sbjct: 1002 WNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLM- 1060

Query: 226  KSPLCKDTTALTPLISMYCKC--------GDLEDACKLFLEIQRK-DVVTWNAMISGYAQ 276
                 +    + P I  +C C        G L++A      +  K D   W A +S    
Sbjct: 1061 -----RSHYGVIPTIE-HCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKI 1114

Query: 277  H 277
            H
Sbjct: 1115 H 1115



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 129/304 (42%), Gaps = 41/304 (13%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL---GI 194
           +I+ Y++FG+   A  +F     +N V+W   +       +  +  K+L   + L   G+
Sbjct: 463 LITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEK--AEDFGVEKYKVLEEFVRLQNKGV 520

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDAC 253
             +   L+ V   C+ L    LG  +H  + K  L   DT  ++ L+  Y +C  L+ A 
Sbjct: 521 NFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLAN 580

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--- 310
           K+F E+ ++D + WN ++    Q G  EKA++LF  M+  G K    T V LL  C+   
Sbjct: 581 KIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKE 640

Query: 311 --------HAGLVDLGIQYFDSMVND----YGIAAKPDH----YTCMVDL---------- 344
                   H  ++ LG +   SM N     Y    K +     +  MVD           
Sbjct: 641 GFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVS 700

Query: 345 -LGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLS--ACRVHKRLDLAEFAAMNLFNLNP 398
              R G + +A+ L+ +M     KP    + +LLS  A +   R  +A    + +  L P
Sbjct: 701 SYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKP 760

Query: 399 ANAA 402
             ++
Sbjct: 761 NTSS 764


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/458 (44%), Positives = 276/458 (60%), Gaps = 2/458 (0%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G+L  A  L + +       +  +I+ + + G+V  A  LFDEMP +N V+W+AM+ GYV
Sbjct: 142 GRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYV 201

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
           +     + L +   M   G+RP+ + L  VL  C+ L +L+ GK VH  +  + +     
Sbjct: 202 QAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVF 261

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
             T L+ MY KCG+++   ++F  ++ K+V+ W  MI G A HG+G  +L LF +M+  G
Sbjct: 262 LGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSG 321

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +KPD I F+  L AC H GLVD G + F+SMVN+YGI  K +HY CMVDLL R G L EA
Sbjct: 322 VKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEA 381

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
            D+++KMP KP   I+G L++ CR HK ++LAE+   +   L P + +G YV L NIY+A
Sbjct: 382 RDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEP-DKSGAYVLLGNIYSA 440

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
             +      IR  M+E  V K PG S +E+  V+H+F  GD  HP +  I  K  E++ R
Sbjct: 441 SGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSR 500

Query: 475 MKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++L  GYVPD +  L  + EE  E  L  HSEKLAIAF LI      PIR+ KNLRVC D
Sbjct: 501 IRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQD 560

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH  TK IS +  REIIVRD TRFH FKDGTCSC DYW
Sbjct: 561 CHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D +++NT+I+   +   +A AR LF  MPE+N+VSWSAM++GY++ G   +A+ +F    
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217

Query: 126 ---VAPVKSVVA----------------W-----------------TAMISGYMKFGKVD 149
              V P  +V+                 W                 TA++  Y K G+V 
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
           L  ++F+ M  KN++ W  MI G   +    D L L   M   G++P+  +    L  C+
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337

Query: 210 HLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTW 267
           H   +  G+++ + +V    +         ++ +  + G L +A  +  ++  K D + W
Sbjct: 338 HTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIW 397

Query: 268 NAMISGYAQHGKGEKA 283
            A+++G   H   E A
Sbjct: 398 GALMAGCRFHKNVELA 413


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/650 (36%), Positives = 355/650 (54%), Gaps = 91/650 (14%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF--QRL 65
           ++N++++ +AK+   ++ A +LFD++PQPD VSYN +++       D   AF  F   R 
Sbjct: 76  SFNTLISAYAKE-SYVEVAHQLFDEMPQPDSVSYNTLIAA-YARRGDTQPAFQLFLEMRE 133

Query: 66  PIKDTASW-----------------------------------NTMISGFVQKKNMAKAR 90
              D   +                                   N +I+ + +   + +AR
Sbjct: 134 AFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEAR 193

Query: 91  DLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV-----------AWTA- 137
            +F  + E ++ VSW++M+  Y++  +  KA+EL+    V+ ++           A+T  
Sbjct: 194 RIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNV 253

Query: 138 -------------MISGYMK-----FGKVDL----------AEKLFDEMPTKNLVTWNAM 169
                        + SGY +      G +DL            K+FDE+   +LV WN M
Sbjct: 254 QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTM 313

Query: 170 IAGY-VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I+GY +    +++ L+  R + G+G RP+  SL  V+  CS++SS   G+QVH L  K  
Sbjct: 314 ISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLD 373

Query: 229 LCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
           +  +  ++   LI+MY KCG+L DA  LF  +   + V++N+MI+GYAQHG G ++L LF
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M +    P +ITF+++L AC H G V+ G  YF+ M   +GI  +  H++CM+DLLGR
Sbjct: 434 QRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AGKL EA  LI+ +PF P    +  LL ACR+H  ++LA  AA  L  L+P NAA  YV 
Sbjct: 494 AGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP-YVM 552

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           LANIY+   +  D A +R  M++  V K PG SWIEV   +H F + D  HP +  I E 
Sbjct: 553 LANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEY 612

Query: 468 LKELEKRMKLAGYVPDLEFALHAVG------EEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
           L+E+ +++K  GY P++  A  +VG      +  +E  L  HSEKLA++FGL+    G P
Sbjct: 613 LEEMMRKIKKVGYTPEVRSA--SVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEP 670

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I VFKNLR+C DCH A KYIS + KREI VRD+ RFH FKDG CSCG YW
Sbjct: 671 ILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +C +L  A  +F      +V ++  +IS Y K   V++A +LFDEMP  + V++N +I
Sbjct: 53  YSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLI 112

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A Y      +   +L   M    +  +  +LS ++  C    ++ L +Q+H L   + L 
Sbjct: 113 AAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGLD 170

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +    LI+ Y K G L++A ++F  + + +D V+WN+M+  Y QH +G KAL L+ +
Sbjct: 171 SYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLE 230

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   G+  D  T  ++L A  +   +  G+Q+   ++   G        + ++DL  + G
Sbjct: 231 MTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCG 289

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
             +     +      P   ++ T++S   +++ L
Sbjct: 290 GCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           S    L  C     L+ GK +H L  KS +   T      + +Y KC  L  A ++F   
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
              +V ++N +IS YA+    E A +LFD+M     +PDS+++  L+ A    G      
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAF 125

Query: 320 QYFDSM 325
           Q F  M
Sbjct: 126 QLFLEM 131



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 27/234 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           + +VN N+++A ++K  G L+DA+ LFD +P+ + VSYN M++    +      +   FQ
Sbjct: 378 RISVN-NALIAMYSKC-GNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG-FQSLHLFQ 434

Query: 64  RLPIKDTASWN-TMISGFVQKKNMAKARD---LFLAMPEKNSVS-----WSAMISGYIEC 114
           R+   D    N T IS      +  +  D    F  M +K  +      +S MI      
Sbjct: 435 RMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMI 170
           G+L +A  L +  P       W+A++      G V+LA K  +   ++   N   +  + 
Sbjct: 495 GKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLA 554

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
             Y +N   +D   + ++M   G++           GC   S +++ +++H  V
Sbjct: 555 NIYSDNGRLQDAASVRKLMRDRGVKKKP--------GC---SWIEVNRRIHIFV 597


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/529 (40%), Positives = 306/529 (57%), Gaps = 12/529 (2%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW 104
           ++DD   A+  F  +P  D   W+ MIS F Q     KA ++F  M      P + + S 
Sbjct: 197 DNDD---AWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSS 253

Query: 105 SAMISGYIECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
               S  IE   L K +     K      V    A+++ Y K G ++ + +LF+ +  +N
Sbjct: 254 VLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRN 313

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
            V+WN +I  YV+    E  L L   M+   ++    + SS+L  C+ L++L+LG QVH 
Sbjct: 314 DVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHC 373

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L  K+   +D      LI MY KCG ++DA  +F  +  +D V+WNA+I GY+ HG G +
Sbjct: 374 LTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVE 433

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A+++F+ MK+   KPD +TFV +L AC++ G +D G QYF SM  DYGI    +HYTCMV
Sbjct: 434 AIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMV 493

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            L+GR+G L +AV  I+ +PF+P   I+  LL AC +H  ++L   +A  +  L P + A
Sbjct: 494 WLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEA 553

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
             +V L+NIYA  ++W +VA +R  MK   V K PG SWIE    VH F   D  H +L 
Sbjct: 554 S-HVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLK 612

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I+  L+ L  + + AGY P L   L  V ++ KE+LL  HSE+LA+AFGL+++P G PI
Sbjct: 613 LINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPI 672

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+ KNLR+C DCH   K IS I  R+IIVRD  RFHHF++G+CSC DYW
Sbjct: 673 RIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYI--ECG 115
           F  +P ++T S+ T+I G+ Q     +A +LF  +     E N   ++ ++   +  E  
Sbjct: 3   FDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWA 62

Query: 116 QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +L + V   + KV    +    TA+I  Y   G V +A ++FDE+ +K++V+W  MIA Y
Sbjct: 63  ELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASY 122

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            EN    + L+    M   G +PN  + + VL  C  L +   GK VH  V K+   +D 
Sbjct: 123 AENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDL 182

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ +Y +CGD +DA + F ++ + DV+ W+ MIS +AQ G+ EKAL +F +M+  
Sbjct: 183 YVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRA 242

Query: 294 GMKPDSITFVALLLACNHAGLVDL 317
            + P+  TF ++L A      +DL
Sbjct: 243 FVIPNQFTFSSVLQASADIESLDL 266



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 41/371 (11%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           V  A + F  +  KD  SW  MI+ + +    ++A + F  M     + N+ +++ ++  
Sbjct: 97  VSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKA 156

Query: 111 YIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
            +     D        + K    + +     ++  Y + G  D A + F +MP  +++ W
Sbjct: 157 CLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPW 216

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           + MI+ + ++  +E  L++   M    + PN  + SSVL   + + SL L K +H    K
Sbjct: 217 SFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALK 276

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + L  D      L++ Y KCG +E + +LF  +  ++ V+WN +I  Y Q G GE+AL L
Sbjct: 277 AGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSL 336

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF---------------DSMVNDYGI 331
           F  M    ++   +T+ ++L AC     ++LG+Q                 +++++ Y  
Sbjct: 337 FSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAK 396

Query: 332 AAKPDHYTCMVDLLGRAGKL---------------VEAV---DLIKKMPFKPQPAIFGTL 373
                    M D+L    K+               VEA+   +L+K+   KP    F  +
Sbjct: 397 CGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGV 456

Query: 374 LSACRVHKRLD 384
           LSAC    RLD
Sbjct: 457 LSACSNTGRLD 467



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +FDEMP +N V++  +I GY +++   +  +L   + G G   N    ++VL     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
            +LG+ VH  V K     +T   T LI  Y   G +  A ++F EI  KD+V+W  MI+ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           YA++    +AL  F +M+  G KP++ TF  +L AC       LG+Q FD+
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNFDA 165


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 315/526 (59%), Gaps = 12/526 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS----- 109
           ++ A   F  +P K+  SWNT+I G V   +  +A  LFL M +  S + S M       
Sbjct: 182 MIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRA 241

Query: 110 ----GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
               G I  G+   +  L K      V    A+I  Y K G ++ A+ +FD+MP K  V 
Sbjct: 242 SAGLGLIFAGRQLHSCSL-KTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG 300

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN++IAGY  + ++E+ L +   M   G++ +  + S ++  C+ L+SL+  KQ H  + 
Sbjct: 301 WNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLV 360

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +     D  A T L+ +Y K G +EDA  +F  +  K+V++WNA+I+GY  HG+G +A+ 
Sbjct: 361 RHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVE 420

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F++M  EGM P+ +TF+A+L AC+++GL D G + F+SM  D+ I  +  HY CM++LL
Sbjct: 421 MFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELL 480

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR G L EA  LIK  PFKP   ++  LL+ACRVHK  +L +FAA  L+ + P   +  Y
Sbjct: 481 GREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN-Y 539

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L NIY    + ++ A +  ++K   +  +P  SWIE+    + F SGD+ H +   I+
Sbjct: 540 VVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIY 599

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           +KL EL   +   GYVP  +F L  V E+ +E++LL+HSEKLAIAFGLI     TP+++ 
Sbjct: 600 QKLDELMLEISKHGYVPQDKFLLPDVDEQ-EERVLLYHSEKLAIAFGLINTSDWTPLQIV 658

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++ R+CGDCH A K I+ + +REI+VRD +RFHHFKDG+CSCGDYW
Sbjct: 659 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           ++K G +  A +LFDEMP KN+++WN +I G V+     +  +L  MM        +   
Sbjct: 176 HVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMF 235

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            +++   + L  +  G+Q+H    K+ +  D      LI MY KCG +EDA  +F ++  
Sbjct: 236 VTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPE 295

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           K  V WN++I+GYA HG  E+AL ++ +M+D G+K D+ TF  ++  C     ++   Q 
Sbjct: 296 KTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQA 355

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              +V  +G        T +VDL  + G++ +A  +   MP K
Sbjct: 356 HAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 125/276 (45%), Gaps = 17/276 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------LLNSDD 54
           M  KTTV WNS++AG+A   G  ++A  ++ ++    V   N   S I      L + + 
Sbjct: 293 MPEKTTVGWNSIIAGYALH-GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH 351

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     R     D  +   ++  + +   +  A+ +F  MP KN +SW+A+I+GY  
Sbjct: 352 AKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGN 411

Query: 114 CGQLDKAVELFKV----APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G+  +AVE+F+       V + V + A++S     G  D   ++F+ M   + +   AM
Sbjct: 412 HGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAM 471

Query: 170 IAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFK 226
               +      +GL  +   ++     +P  +  +++L  C    + +LGK    +L   
Sbjct: 472 HYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGM 531

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            P  +  +    L+++Y + G LE+A  +   ++R+
Sbjct: 532 GP--EKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRR 565



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           ++ +  +++  C  L S++  K+V   +  S L  D      ++ M+ KCG + DA +LF
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLF 189

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            E+  K++++WN +I G    G   +A RLF  M  +     S  FV ++ A    GL+ 
Sbjct: 190 DEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIF 249

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G Q     +   G+         ++D+  + G + +A  +  +MP K
Sbjct: 250 AGRQLHSCSLKT-GVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEK 296



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           N+ L     + G+++DA+ +FD +P  +V+S+N +++    N    V A + F+R+    
Sbjct: 371 NTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG-YGNHGRGVEAVEMFERMLHEG 429

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKA 120
            + +  ++  ++S         +  ++F +M   + +      ++ MI      G LD+A
Sbjct: 430 MVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEA 489

Query: 121 VELFKVAPVKSVV-AWTAMISGYMKFGKVDL----AEKLFDEMPTKNLVTWNAMIAGYVE 175
             L K AP K  V  W A+++        +L    AEKL+   P K L  +  ++  Y  
Sbjct: 490 FALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEK-LSNYVVLLNIYNR 548

Query: 176 NSWAEDGLKLLRMMIGLGIR 195
           +   E+   +++ +   G+R
Sbjct: 549 SGRLEEAAAVIQTLKRRGLR 568


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 327/567 (57%), Gaps = 34/567 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS------- 78
           A+ +FD +   DVVS+  M  C  +N          F+ + +    + +  +S       
Sbjct: 131 ARCVFDDMVVKDVVSWTSMTYC-YVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA 189

Query: 79  ----------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                     GF+ +  M           E N    SA+++ Y     L +A  +F    
Sbjct: 190 DYIKLGREVHGFILRNEM-----------EGNVYVSSALVNMYASSLGLKQARLVFDSMY 238

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLK 184
            + +V+W  M++ Y    + +    LF +M  +    N  +WNA I+G ++N   E  L 
Sbjct: 239 HRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALG 298

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           +L  M   GI+PN  ++ S L GC++L SL+ GK++H  VF+    +D T  T L+ +Y 
Sbjct: 299 ILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYA 358

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCGDLE +  +F  + RKDVV WN MI   + HGKG ++L LF+KM D G++P+S+TF+ 
Sbjct: 359 KCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIG 418

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L  C+H+ L D G+  F+SM +++ I    DHY+CMVD+L RAG+L EA D I+KMP +
Sbjct: 419 VLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIE 478

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P  A +G LL ACRV+K ++L   AA  LF + P N AG YV L+NI    KKW + + I
Sbjct: 479 PTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDN-AGNYVLLSNILVTAKKWVEASEI 537

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R  M++  + K PG SW++V   V+ F +GD+ + +   I+  L E++++M+L GY P+ 
Sbjct: 538 RKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNT 597

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
           +F L  V +E +E+ L  HSE+LA+AFG++     T +RVFKNLR+CGDCH A K I+ I
Sbjct: 598 DFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKI 657

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
              +IIVRD+ RFHHF+DG C+C D+W
Sbjct: 658 VGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 19/329 (5%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           +  K+P       +I L    LNS D+  A   F ++P  D  +W  +ISG  Q     K
Sbjct: 1   MVSKLPANLQPCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKK 60

Query: 89  ARDLFLAMPEKN---------SVSWSAMISGYIECGQ--LDKAVELFKVAPVKSVVAWTA 137
           A D++  +  +N         SV+ +   SG +   +   D A++       K +V   A
Sbjct: 61  AIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQF---GFNKDLVLGNA 117

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  + K   V+ A  +FD+M  K++V+W +M   YV       G+ L R M   GIR N
Sbjct: 118 LIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRAN 177

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           + ++SS+L  C+    ++LG++VH  + ++ +  +    + L++MY     L+ A  +F 
Sbjct: 178 SLTVSSILPACA--DYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFD 235

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +D+V+WN M++ Y  + + E+ L LF +M+ EG+K +  ++ A +  C   G  +L
Sbjct: 236 SMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHEL 295

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            +     M  D GI  KP+  T +  L G
Sbjct: 296 ALGILCKM-QDSGI--KPNRITIVSALPG 321


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 320/548 (58%), Gaps = 13/548 (2%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           PQ    + +++ + + L++    AA   F ++   +  +WNTMI GF + +N + A +LF
Sbjct: 65  PQNPDFNKHLIFALVSLSAPMSFAA-QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELF 123

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----------WTAMISGYM 143
             M   +S+        ++    + K +++     + SVV             +++  Y 
Sbjct: 124 SQMHAASSILPDTHTFPFL-FKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS 182

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
            FG  + A ++F+ M  ++ V WN++I G+  N    + L L R M   G+ P+  ++ S
Sbjct: 183 VFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVS 242

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C  L +L LG++VH  + K  L ++  A   L+ +Y KCG+  DA K+F E++ + 
Sbjct: 243 LLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS 302

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+W ++I G A +G G +AL+LF +++ +G+KP  ITFV +L AC+H G++D G  YF 
Sbjct: 303 VVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFR 362

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            M  +YGI  + +H+ CMVDLL RAGK+ +A D I+ MP  P   I+ TLL AC +H  L
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHL 422

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           +L E A   +  L   + +G +V L+N+YA+ ++W DV  +R  M    V K PGYS +E
Sbjct: 423 ELGEVARAEIQRLEQRH-SGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVE 481

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +   V+EF  GDR HP+    +  L ++ + +K+ GYVP     L  + EE KE  L  H
Sbjct: 482 LKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHH 541

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           +EK+AIAF L+  P GTPIR+ KNLRVC DCH A K IS + +REIIVRD +RFHHFKDG
Sbjct: 542 TEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDG 601

Query: 564 TCSCGDYW 571
           +CSC DYW
Sbjct: 602 SCSCKDYW 609


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/568 (39%), Positives = 334/568 (58%), Gaps = 22/568 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLP----IKDTASWN 74
           G++  A+ +FD++ Q DVV++N M+   C     D+   AF  F+ +     + D     
Sbjct: 163 GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDE---AFKLFEEMKDSNVMPDEMILC 219

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            ++S   +  NM   R ++  + E +    +   +A+++ Y   G +D A+E F+   V+
Sbjct: 220 NIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVR 279

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           ++   TAM+SGY K G++D A  +FD+   K+LV W  MI+ Y E+   ++ L++   M 
Sbjct: 280 NLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMC 339

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             GI+P+  ++ SV+  C +L +L   K VH+    + L         LI+MY KCG L+
Sbjct: 340 CSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLD 399

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A  +F ++  ++VV+W++MI+ +A HG+   +L LF +MK E ++P+ +TFV +L  C+
Sbjct: 400 AARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCS 459

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GLV+ G + F SM ++Y I  K +HY CMVDL GRA  L EA+++I+ MP  P   I+
Sbjct: 460 HSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIW 519

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           G+L+SACRVH  L+L E AA  +  L P +  G  V ++NIYA   +WD V  IR  M++
Sbjct: 520 GSLMSACRVHGELELGELAAKRILKLEP-DHDGALVLMSNIYAREYRWDYVRIIRWIMEK 578

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
             V K  G S I++    HEF  GD+ H +   I+ KL E+  ++KLAGYVPD    L  
Sbjct: 579 KKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVD 638

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLI-------KVPLGTPIRVFKNLRVCGDCHRATKYISA 543
           V EE K+ L+L+HSEKLA+ FGL+       K   G  IR+ KNLRVC DCH   K +S 
Sbjct: 639 VEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGV-IRIVKNLRVCEDCHAFFKLVSK 697

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + + EIIVRD TRFH +KDG CSC DYW
Sbjct: 698 VYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 180/407 (44%), Gaps = 60/407 (14%)

Query: 26  AQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           A  LF  I P P+ + +N +L   L  S +  A   F+QR  I+        IS     K
Sbjct: 66  ALNLFSSISPLPESIVFNSLLR-DLSRSGEPRATILFYQR--IRHVGGRFDRISFPPILK 122

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
            ++K   LF  M           + G+            FK+A +      T ++  Y  
Sbjct: 123 AVSKVSALFEGME----------LHGFA-----------FKIATLSDPFVETGLMDMYAA 161

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
            G+++ A  +FDEM  +++VTWN MI  Y      ++  KL   M    + P+   L ++
Sbjct: 162 CGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNI 221

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------------------- 244
           +  C    +++  + ++  + ++ +  DT  LT L++MY                     
Sbjct: 222 VSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNL 281

Query: 245 -----------KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                      K G L+DA  +F + + KD+V W  MIS YA+    ++ALR+F++M   
Sbjct: 282 FVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCS 341

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KPD +T ++++ AC + G +D   ++     +  G+ +       ++++  + G L  
Sbjct: 342 GIKPDVVTMLSVISACVNLGTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDA 400

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRL--DLAEFAAMNLFNLNP 398
           A D+ +KMP +     + ++++A  +H      L+ FA M   N+ P
Sbjct: 401 ARDVFEKMPTR-NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEP 446



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 6/266 (2%)

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P    + +N+++     +      +   + +  +G R +  S   +L   S +S+L  G 
Sbjct: 75  PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           ++H   FK     D    T L+ MY  CG +  A  +F E+ ++DVVTWN MI  Y + G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             ++A +LF++MKD  + PD +    ++ AC   G +      +D ++ +  +       
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN-DVRMDTHLL 253

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
           T +V +   AG +  A++  +KM  +    +   ++S      RLD A      +F+   
Sbjct: 254 TALVTMYAGAGCMDMAMEFFRKMSVR-NLFVSTAMVSGYSKAGRLDDARV----IFDQTE 308

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARI 424
                C+  + + YA      +  R+
Sbjct: 309 MKDLVCWTTMISAYAESDHPQEALRV 334


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/438 (44%), Positives = 282/438 (64%), Gaps = 3/438 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLG 193
           T ++  Y KFG V  A  +F  MPTKN V+W+AMIA + +N      L+L ++M+     
Sbjct: 222 TTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACN 281

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             PN+ ++ ++L  C+ L++L+ GK +H  + +  L      L  LI+MY +CG++    
Sbjct: 282 SVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQ 341

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  ++++DVV+WN++IS Y  HG G+KA+++F+ M  +G+ P  I+F+ +L AC+HAG
Sbjct: 342 RVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAG 401

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+ G   F+SM++ Y I    +HY CMVDLLGRA +L EA+ LI+ M F+P P ++G+L
Sbjct: 402 LVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSL 461

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L +CR+H  ++LAE A+  LF L P N AG YV LA+IYA  K W +   +   ++   +
Sbjct: 462 LGSCRIHCNVELAERASTVLFELEPRN-AGNYVLLADIYAEAKLWSEAKSVMKLLEARGL 520

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+PG SWIEV   V+ F S D  +P++  IH  L +L   MK  GYVP     L+ + E
Sbjct: 521 QKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDE 580

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE+++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS    REI+VRD
Sbjct: 581 EEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRD 640

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHF+DG CSCGDYW
Sbjct: 641 VNRFHHFRDGVCSCGDYW 658



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 20/258 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL--------FK 125
           N +I    +  N+ +A  L    P     ++  +I    +   L   +++        F 
Sbjct: 51  NQLIQSLCKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFD 110

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
             P  +    T +I+ Y + G +D A K+FDE   + +  WNA+          ++ L L
Sbjct: 111 QDPFLA----TKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDL 166

Query: 186 LRMMIGLGIRPNASSLSSVLLGC--SHLS--SLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
              M  +G   +  + + VL  C  S LS   L+ GK++H  + +     +   +T L+ 
Sbjct: 167 YIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLD 226

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK--PDS 299
           +Y K G +  A  +F  +  K+ V+W+AMI+ +A++    KAL LF  M  E     P+S
Sbjct: 227 VYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNS 286

Query: 300 ITFVALLLACNHAGLVDL 317
           +T V +L AC  AGL  L
Sbjct: 287 VTMVNMLQAC--AGLAAL 302



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 36/199 (18%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-LAMPEK-----NSVSWSAM 107
            V  A   F  +P K+  SW+ MI+ F + +   KA +LF L M E      NSV+   M
Sbjct: 233 SVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNM 292

Query: 108 ---------------ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAE 152
                          I GYI   QLD       + PV       A+I+ Y + G+V + +
Sbjct: 293 LQACAGLAALEQGKLIHGYILRRQLD------SILPV-----LNALITMYGRCGEVLMGQ 341

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           ++FD M  +++V+WN++I+ Y  + + +  +++   MI  G+ P+  S  +VL  CSH  
Sbjct: 342 RVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAG 401

Query: 213 SLQLGKQVHQLVFKSPLCK 231
            ++ GK    ++F+S L K
Sbjct: 402 LVEEGK----ILFESMLSK 416



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 123/298 (41%), Gaps = 15/298 (5%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           +  +  P +S + +T+ +S  +    V L  +  L +++ + N    N +I    +    
Sbjct: 8   QFVRHVPSQSHLCYTSHVSSRVPVSFVSLNPSANLINDINSNN----NQLIQSLCKGGNL 63

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           +  L LL         P   +   ++  C+  +SL  G  VH+ +  S   +D    T L
Sbjct: 64  KQALHLL----CCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKL 119

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I+MY + G ++ A K+F E + + +  WNA+    A  G G++ L L+ +M   G   D 
Sbjct: 120 INMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDR 179

Query: 300 ITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            T+  +L AC  + L    ++      + +  +G  A     T ++D+  + G +  A  
Sbjct: 180 FTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANS 239

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
           +   MP K    +  + + AC     + +       L      N+    V + N+  A
Sbjct: 240 VFCAMPTK--NFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQA 295


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 309/525 (58%), Gaps = 9/525 (1%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE- 113
           +V A   F  +  K+  SW  +++GFVQ     +A  LF  M ++  +     +  +I+ 
Sbjct: 92  LVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDS 151

Query: 114 CGQ---LDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           CG    L +  E+   A        +V   A+I+ Y K G +  A  +F  MP KN+++W
Sbjct: 152 CGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISW 211

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           + MIA + +N  A++ L   ++M   G+  +  +  SVL   + + +L+LGK +H  +  
Sbjct: 212 STMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVY 271

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + L         L++MY KCG  +DA  +F  +  K+VV+WNAM++ Y Q+G+  +AL L
Sbjct: 272 AGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALAL 331

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           FD M  EG++P+ ITFV +L  C+H+G     + +F  M  D+GI  +  H+ C++D+LG
Sbjct: 332 FDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLG 391

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R+GKL EA +LI+ MP      ++ +LL AC  HK  D A  AA   F   P  AA  Y+
Sbjct: 392 RSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAA-YI 450

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+N+YAA+KKWD+ A++R  M++  V K  G SWIE+   VHEF +GD +HP+   I +
Sbjct: 451 MLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFK 510

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            L+ L   M++ GY PD +  +H++ EE K+++L +HSEKLA+AFG+   P  TP+ + K
Sbjct: 511 TLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVK 570

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLRVC DCH A K+IS +E R I VRD+ RFHHF  G CSCGDYW
Sbjct: 571 NLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 140/308 (45%), Gaps = 37/308 (12%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K G +  A+++FD M  KN+ +W  ++AG+V++    + ++L   M   G  P+
Sbjct: 82  LVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPD 141

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +L   +  C    +L  G+++H       +  D      +I+MY KCG + +A  +F 
Sbjct: 142 RVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFT 201

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  K+V++W+ MI+ + Q+   ++AL  F  M+ EGM+ D IT+V++L A    G ++L
Sbjct: 202 RMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALEL 261

Query: 318 G---------------IQYFDSMVNDYGIAAKPD---------------HYTCMVDLLGR 347
           G               I   +++VN YG    PD                +  M+   G+
Sbjct: 262 GKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQ 321

Query: 348 AGKLVEAVDLIKKMPF---KPQPAIFGTLLSACRVHKRLD--LAEFAAMNL-FNLNPANA 401
            G+  EA+ L   M     +P    F T+L  C    +    ++ F  M   F + P   
Sbjct: 322 NGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREV 381

Query: 402 A-GCYVQL 408
             GC + +
Sbjct: 382 HFGCLIDM 389



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G       L  ++  C+   +L+ G+++H+ +    L +       L+ MY KCG L +A
Sbjct: 36  GAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEA 95

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F  +Q K+V +W  +++G+ Q G+G +A++LF +M  EG  PD +  +  + +C  A
Sbjct: 96  KRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAA 155

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             +  G +   S     G+ +       ++++ G+ G + EA  +  +MP K
Sbjct: 156 KALSQG-REIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEK 206


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/525 (40%), Positives = 313/525 (59%), Gaps = 14/525 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMI----- 108
           A +    +P ++  SW  MISG+ Q +  A+A DLF+ M     E N  + ++++     
Sbjct: 89  AHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTG 148

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAW--TAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
           S  I   Q+ K V  F +     +  +  ++++  Y +   +  A ++FD +P +++V++
Sbjct: 149 SQGIHQHQI-KQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSY 207

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
             +++GY      E+ L L R +   G++ N  + S +L   S LSS+  GKQVH L+ +
Sbjct: 208 TTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILR 267

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             L         LI MY KCG L  + ++F  +  + VV+WNAM+ GY +HG   + ++L
Sbjct: 268 RELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQL 327

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M D+ +KPDS+T +A+LL  +H GLVD G+  FD +V +        HY C++DLLG
Sbjct: 328 FRFMCDK-VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLG 386

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R+G+L +A+ LI+KMPF+P  AI+G+LL ACRVH  + + EF A  LF++ P NA G YV
Sbjct: 387 RSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENA-GNYV 445

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+NIYAA + W DV R+R  M +  V+K PG SW+ +  V+H F S +R HP    I+ 
Sbjct: 446 ILSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINV 505

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
           K+ E+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P    I+V K
Sbjct: 506 KINEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMK 565

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR+C DCH   K++S +  REI +RD  RFH   +G C+CGDYW
Sbjct: 566 NLRICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 9/232 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y + G ++ A  + D MP +N+V+W AMI+GY +N    +   L  MM+  G  
Sbjct: 74  TRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCE 133

Query: 196 PNASSLSSVLLGCSHLSSLQLG--KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           PN  +L+SVL  C+    +     KQVH    K          + L+ MY +  ++++A 
Sbjct: 134 PNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEAR 193

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  +  +DVV++  ++SGY + G  E+AL LF ++ +EGM+ + +TF  LL A +   
Sbjct: 194 RVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLS 253

Query: 314 LVDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            +D G Q    ++     + +A +      ++D+  + GKL+ +  +   MP
Sbjct: 254 SMDYGKQVHGLILRRELPFFMALQ----NSLIDMYSKCGKLLYSRRVFDNMP 301



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C    +L+ G+QVH  +  +         T L+ MY +CG LEDA  +   +  ++VV+W
Sbjct: 45  CVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSW 104

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
            AMISGY+Q+ +  +A  LF  M   G +P+  T  ++L +C  +  +    Q+    V+
Sbjct: 105 TAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIH---QHQIKQVH 161

Query: 328 DYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            + I    + +    + ++D+  R+  + EA  +   +P +   + + T+LS    + RL
Sbjct: 162 AFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVS-YTTILSG---YTRL 217

Query: 384 DLAEFAAMNLF 394
            L E  A+NLF
Sbjct: 218 GLDE-EALNLF 227



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 50/262 (19%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----------------------- 46
           +S+L  +A+    +++A+ +FD +P  DVVSY  +LS                       
Sbjct: 177 SSLLDMYARSE-NIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGM 235

Query: 47  -------CILLNSDDVVAAFDFFQR---------LPIKDTASWNTMISGFVQKKNMAKAR 90
                   +LLN+   +++ D+ ++         LP    A  N++I  + +   +  +R
Sbjct: 236 QCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFF-MALQNSLIDMYSKCGKLLYSR 294

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-----KVAPVKSVVAWTAMISGYMKF 145
            +F  MPE++ VSW+AM+ GY   G   + V+LF     KV P    V   A++ GY   
Sbjct: 295 RVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDKVKP--DSVTLLAVLLGYSHG 352

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSS 203
           G VD    +FD +  +     N    G V +     G   K L ++  +  +P  +   S
Sbjct: 353 GLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGS 412

Query: 204 VLLGCSHLSSLQLGKQVHQLVF 225
           +L  C   +++ +G+ V Q +F
Sbjct: 413 LLGACRVHANVHVGEFVAQKLF 434


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/518 (39%), Positives = 306/518 (59%), Gaps = 10/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
           F+  P K   +W+++IS F Q +    + +    M      P+ + +  +    G +   
Sbjct: 73  FEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRC 132

Query: 116 QLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            + K+V     K      V   ++++  Y K G++  A K+FDEMP +N+VTW+ M+ GY
Sbjct: 133 DIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGY 192

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            +    E+ L L +  +   +  N  S S+V+  C++ + L+LG+Q+  L  KS     +
Sbjct: 193 AQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSS 252

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+S+Y KCGDLE A ++F E+  +++  WNAM+   AQH   +K + LF +MK  
Sbjct: 253 FVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLS 312

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           GMKP+ ITF+ +L AC+HAGLVD G  YFD ++ +  I     HY  +VD+LGRAGKL E
Sbjct: 313 GMKPNFITFLNVLNACSHAGLVDEGKYYFD-LMKESRIEPTDKHYASLVDMLGRAGKLEE 371

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A++++  MP  P  +++G LL++C +HK  +LA FAA  +F L P  ++G ++ L+N YA
Sbjct: 372 ALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPV-SSGMHISLSNAYA 430

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  +++D A+ R  +++    K  G SW+E    VH F +G+R H     I+EKL EL +
Sbjct: 431 ADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGE 490

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
            M+ AGYV D  + L  V  + K Q + +HSE+LAIAFGLI  P   PIRV KNLRVCGD
Sbjct: 491 EMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGD 550

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A K++S   +R IIVRD  RFH F+DG CSC DYW
Sbjct: 551 CHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 33/330 (10%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           FV   N  +  DL L+     S+     + GYI                VKS ++   ++
Sbjct: 9   FVPCHNYNQICDLLLSSARSRSIVKGLQLHGYI----------------VKSGLSLIPLV 52

Query: 140 SGYMK--FGKVDL---AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           +  +   + K  L   + + F++ P K+  TW+++I+ + +N      L+ LR M+   +
Sbjct: 53  ANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSL 112

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP+   L S    C  LS   +GK VH L  K+    D    + L+ MY KCG++  A K
Sbjct: 113 RPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARK 172

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F E+  ++VVTW+ M+ GYAQ G+ E+AL LF +   E +  +  +F  ++  C ++ L
Sbjct: 173 MFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTL 232

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           ++LG Q     +    I +  D      + +V L  + G L  A  +  ++P +    I+
Sbjct: 233 LELGRQ-----IQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMR-NLGIW 286

Query: 371 GTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
             +L AC  H      +  F  M L  + P
Sbjct: 287 NAMLKACAQHSHTQKVIELFKRMKLSGMKP 316



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 124/252 (49%), Gaps = 13/252 (5%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL-AMPEK---NSVSWSAMI- 108
           ++V A   F  +P+++  +W+ M+ G+ Q     +A  LF  A+ E    N  S+S +I 
Sbjct: 166 EIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVIS 225

Query: 109 ----SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
               S  +E G+  + +   K +   S    ++++S Y K G ++ A ++FDE+P +NL 
Sbjct: 226 VCANSTLLELGRQIQGL-CIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLG 284

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WNAM+    ++S  +  ++L + M   G++PN  +  +VL  CSH   +  GK    L+
Sbjct: 285 IWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLM 344

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEK 282
            +S +         L+ M  + G LE+A ++   + I   + V W A+++    H   E 
Sbjct: 345 KESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESV-WGALLTSCTIHKNTEL 403

Query: 283 ALRLFDKMKDEG 294
           A    DK+ + G
Sbjct: 404 AAFAADKVFELG 415


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/553 (38%), Positives = 322/553 (58%), Gaps = 13/553 (2%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87
            L   I + D+V  N +L+ +      +  A   F ++P +D  +W T+ISG+ Q     
Sbjct: 76  HLIQSIFRHDLVMNNTLLN-MYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPF 134

Query: 88  KARDLFLAMPE----KNSVSWSAMISGYIE-----CGQLDKAVELFKVAPVKSVVAWTAM 138
            A  LF  M       N  + S++I          CG         K     +V   +A+
Sbjct: 135 DALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGF-CVKCGFDSNVHVGSAL 193

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           +  Y ++G +D A+ +FD + ++N V+WNA+IAG+      E  L+L + M+  G RP+ 
Sbjct: 194 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSH 253

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            S +S+   CS    L+ GK VH  + KS       A   L+ MY K G + DA K+F  
Sbjct: 254 FSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDR 313

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           + ++DVV+WN++++ YAQHG G +A+  F++M+  G++P+ I+F+++L AC+H+GL+D G
Sbjct: 314 LAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEG 373

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
             Y++ M  D GI  +  HY  +VDLLGRAG L  A+  I++MP +P  AI+  LL+ACR
Sbjct: 374 WHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACR 432

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +HK  +L  +AA ++F L+P +  G +V L NIYA+  +W+D AR+R  MKE+ V K P 
Sbjct: 433 MHKNTELGAYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPA 491

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SW+E+   +H F + D  HP+   I  K +E+  ++K  GYVPD    +  V ++ +E 
Sbjct: 492 CSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREV 551

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
            L +HSEK+A+AF L+  P G+ I + KN+RVCGDCH A K  S    REIIVRDT RFH
Sbjct: 552 NLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFH 611

Query: 559 HFKDGTCSCGDYW 571
           HFKDG CSC DYW
Sbjct: 612 HFKDGACSCKDYW 624



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +++L  C+    L  G+ VH  + +S    D      L++MY KCG LE+A K+F ++  
Sbjct: 55  NTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPE 114

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +D VTW  +ISGY+QH +   AL LF++M   G  P+  T  +++ A
Sbjct: 115 RDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA 161



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 149/330 (45%), Gaps = 36/330 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIML----SCILLNS 52
           +  +  V+WN+++AG A++ G  K A ELF  +     +P   SY  +     S   L  
Sbjct: 213 LESRNDVSWNALIAGHARRCGTEK-ALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQ 271

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V A+       +   A  NT++  + +  ++  AR +F  + +++ VSW+++++ Y 
Sbjct: 272 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 330

Query: 113 ECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV--TW 166
           + G  ++AV    E+ +     + +++ ++++     G +D     ++ M    +V   W
Sbjct: 331 QHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAW 390

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           + +    +    A D  + LR +  + I P A+   ++L  C    + +LG    + VF+
Sbjct: 391 HYVTIVDLLGR-AGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFE 449

Query: 227 -SPLCKDTTALTPLISMYCKCGDLEDACKLFLE-----IQRKDVVTW----NAM---ISG 273
             P   D      L ++Y   G   DA ++  +     ++++   +W    NA+   ++ 
Sbjct: 450 LDP--DDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAN 507

Query: 274 YAQHGKGEKALRLFD----KMKDEGMKPDS 299
             +H + E+  R ++    K+K+ G  PD+
Sbjct: 508 DERHPQREEIARKWEEVLAKIKELGYVPDT 537


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/468 (42%), Positives = 286/468 (61%), Gaps = 2/468 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAP-VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +A I  Y  CG +    ++F   P V+ VV W A+++GY++ G V +A ++FD MP ++ 
Sbjct: 171 NAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDE 230

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W+ +I GYV+    E  L + + M+  G++ N +++ + L   + L  L+ GK VH++
Sbjct: 231 VSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEV 290

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V +  +         LI MY KCG +  A ++F  + R+DV  WN+MI G A HG G  A
Sbjct: 291 VKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDA 350

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           ++LF+K   EG  P SITFV +L AC+  GLVD G +YF  M   Y I ++ +HY CMVD
Sbjct: 351 VQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVD 410

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LL RAG + EAV+LI+ M   P P ++GT+LSAC+ H  +DL       L  L+PA+  G
Sbjct: 411 LLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAH-DG 469

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            YV LA+IYA  KKWD+V ++R  M      K  G+S +E   +VH+F  GD  H +   
Sbjct: 470 YYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSAR 529

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I+  L  + +R+  AGYVPD+   LH +G+E K   +  HSE+LAIA+G I V  G+PIR
Sbjct: 530 IYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIR 589

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KNL VCGDCH  +K ++ +  REI+VRD +RFHH KDG CSC DYW
Sbjct: 590 IVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 33/186 (17%)

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNA 269
           ++S  +G  VH L  K+    D       I  Y  CGD+    K+F E+   +DVVTWNA
Sbjct: 145 IASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNA 204

Query: 270 -------------------------------MISGYAQHGKGEKALRLFDKMKDEGMKPD 298
                                          +I GY + G+ E AL +F  M  +G+K +
Sbjct: 205 VLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKAN 264

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
               V  L A    GL++ G ++   +V   G+    +    ++D+  + G +  A ++ 
Sbjct: 265 EAAIVTALSAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVF 323

Query: 359 KKMPFK 364
             MP +
Sbjct: 324 DAMPRR 329



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 13/162 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           + +  +VN  + L     + G +  A+E+FD +P+ DV ++N M+  +  +    D V  
Sbjct: 294 VGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQL 353

Query: 59  FDFFQRLPIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYI 112
           F+ F       T+ ++  +++   +   + + R  F  M EK  +      +  M+    
Sbjct: 354 FEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLS 413

Query: 113 ECGQLDKAVELF---KVAPVKSVVAWTAMISGYMKFGKVDLA 151
             G + +AVEL    ++ P    V W  ++S   + G VDL 
Sbjct: 414 RAGLVQEAVELIEGMRIPP--DPVLWGTILSACKRHGLVDLG 453


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/649 (37%), Positives = 353/649 (54%), Gaps = 88/649 (13%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP- 66
           ++N ++  +AK   K+  A++LFD+IPQPD VSYN ++S    ++ +  AA   F+R+  
Sbjct: 76  SYNVIVKAYAKD-SKIHIARQLFDEIPQPDTVSYNTLISG-YADARETFAAMVLFKRMRK 133

Query: 67  -----------------------IKDTASW-------------NTMISGFVQKKNMAKAR 90
                                  IK    +             N  ++ + +   + +A 
Sbjct: 134 LGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193

Query: 91  DLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAW 135
            +F  M E ++ VSW++MI  Y +  +  KA+ L+K               + + ++ + 
Sbjct: 194 SVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSL 253

Query: 136 TAMISG-------------------------YMKFGKVDL---AEKLFDEMPTKNLVTWN 167
             +I G                         Y K G  D    +EK+F E+ + +LV WN
Sbjct: 254 DHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWN 313

Query: 168 AMIAGYVEN-SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            MI+GY  N   +E+ +K  R M  +G RP+  S   V   CS+LSS    KQ+H L  K
Sbjct: 314 TMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIK 373

Query: 227 SPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           S +  +  ++   LIS+Y K G+L+DA  +F  +   + V++N MI GYAQHG G +AL 
Sbjct: 374 SHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALL 433

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           L+ +M D G+ P+ ITFVA+L AC H G VD G +YF++M   + I  + +HY+CM+DLL
Sbjct: 434 LYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLL 493

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GRAGKL EA   I  MP+KP    +  LL ACR HK + LAE AA  L  + P  AA  Y
Sbjct: 494 GRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPL-AATPY 552

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V LAN+YA  +KW+++A +R SM+   + K PG SWIEV    H F + D  HP +  ++
Sbjct: 553 VMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVN 612

Query: 466 EKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
           E L+E+ K+MK  GYV D ++A+      GE  +E  L  HSEKLA+AFGL+    G  +
Sbjct: 613 EYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEEL 672

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            V KNLR+CGDCH A K++SA+  REIIVRD  RFH FKDG CSCGDYW
Sbjct: 673 VVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 172/355 (48%), Gaps = 16/355 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L  A+  F    +P+V SYN+++     +S  +  A   F  +P  DT S+NT+ISG+
Sbjct: 57  GRLSYARAAFYSTEEPNVFSYNVIVKAYAKDS-KIHIARQLFDEIPQPDTVSYNTLISGY 115

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVA----PVKSV 132
              +    A  LF  M     E +  + S +I+   +   L K +  F V+       SV
Sbjct: 116 ADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSV 175

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
               A ++ Y K G +  A  +F  M   ++ V+WN+MI  Y ++      L L + MI 
Sbjct: 176 N--NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIF 233

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE- 250
            G + +  +L+SVL   + L  L  G+Q H  + K+   +++   + LI  Y KCG  + 
Sbjct: 234 KGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDG 293

Query: 251 --DACKLFLEIQRKDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLL 307
             D+ K+F EI   D+V WN MISGY+ + +  E+A++ F +M+  G +PD  +FV +  
Sbjct: 294 MYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           AC++        Q     +  +  + +      ++ L  ++G L +A  +  +MP
Sbjct: 354 ACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 140/307 (45%), Gaps = 16/307 (5%)

Query: 90  RDLFL-----AMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           RDLF      A+  K+ V+ S  +S      Y +CG+L  A   F      +V ++  ++
Sbjct: 22  RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIV 81

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K  K+ +A +LFDE+P  + V++N +I+GY +       + L + M  LG   +  
Sbjct: 82  KAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGF 141

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +LS ++  C     + L KQ+H           ++     ++ Y K G L +A  +F  +
Sbjct: 142 TLSGLIAAC--CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 260 QR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
              +D V+WN+MI  Y QH +G KAL L+ +M  +G K D  T  ++L A      +  G
Sbjct: 200 DELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK--KMPFKPQPAIFGTLLSA 376
            Q+   ++   G        + ++D   + G      D  K  +    P   ++ T++S 
Sbjct: 260 RQFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISG 318

Query: 377 CRVHKRL 383
             +++ L
Sbjct: 319 YSMNEEL 325



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 46/178 (25%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++ N+ L     + G L+DA+ +FD++P+ + VS+                         
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMPELNAVSF------------------------- 415

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
                  N MI G+ Q  +  +A  L+  M +     N +++ A++S    CG++D+  E
Sbjct: 416 -------NCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE 468

Query: 123 L-------FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
                   FK+ P      ++ MI    + GK++ AE+  D MP K   V W A++  
Sbjct: 469 YFNTMKETFKIEP--EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGA 524


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/567 (36%), Positives = 326/567 (57%), Gaps = 22/567 (3%)

Query: 22  KLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-------------- 66
            L  A+ +FD+ P  P  + +N+M+           + + F Q L               
Sbjct: 102 NLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTF 161

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           +    S +  + G+ +  +    +D +    E +    +++++ Y    ++  A  +F  
Sbjct: 162 VFTACSRHPTLRGYGENVHGMVVKDGY----ESDIFVGNSLVNMYSIFSRMVDAKRVFDE 217

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P + V+ WT+++ GY   G++  A +LFD MP +N V+W  M+AGYV + +  + L+  
Sbjct: 218 MPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCF 277

Query: 187 R-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
             M+    ++PN + L S+L  C+HL +L  GK +H  + K+ +   +   T LI MY K
Sbjct: 278 NDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAK 337

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           CG ++ A ++F  + ++D++TW +MISG + HG G + L  F +M  EG KPD IT + +
Sbjct: 338 CGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGV 397

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L  C+H+GLV+ G+  F  M+  +GI  K +HY C++DLLGRAG+L  A + IK MP +P
Sbjct: 398 LNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEP 457

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
               +  LLSACR+H  +DL E    ++  L P +  G YV L+N+YA+M +W+ V ++R
Sbjct: 458 DVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVR 517

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDL 484
            +M +      PG SWIE+  VVHEF + D++HP +  I++KL E+ +R+ +  GYVP  
Sbjct: 518 KAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPST 577

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
           +  L  + EE KEQ + +HSEKLA+AFGL+    GT IR+ KNLR C DCH A K IS +
Sbjct: 578 KQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLV 636

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
             REI+VRD +RFH F+ G CSC DYW
Sbjct: 637 FNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 130/303 (42%), Gaps = 44/303 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  + W SV+ G+A  RG+L  A+ELFD +P                          
Sbjct: 218 MPQRDVITWTSVVKGYA-MRGELVRARELFDMMPG------------------------- 251

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-----PEKNSVSWSAMISGYIECG 115
                  ++  SW  M++G+V  +   +A   F  M      + N     +++S     G
Sbjct: 252 -------RNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLG 304

Query: 116 QLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            LD+     V + K   + S    TA+I  Y K G++D A ++FD +  ++L+TW +MI+
Sbjct: 305 ALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMIS 364

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLC 230
           G   +    + L     M+  G +P+  +L  VL GCSH   ++ G  + H ++    + 
Sbjct: 365 GLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIV 424

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                   LI +  + G LE A +    +    DVV W A++S    HG  +   R+ + 
Sbjct: 425 PKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINH 484

Query: 290 MKD 292
           + +
Sbjct: 485 IAE 487



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 5/154 (3%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMI 271
           SL   KQ+H  V    L ++T+ L PLI  Y  C +L  A  +F +       + WN MI
Sbjct: 67  SLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMI 126

Query: 272 SGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACN-HAGLVDLGIQYFDSMVND 328
             Y++    +++L LF +M   G     D  TF  +  AC+ H  L   G      +V D
Sbjct: 127 QAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKD 186

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            G  +       +V++     ++V+A  +  +MP
Sbjct: 187 -GYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 338/628 (53%), Gaps = 71/628 (11%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAF 59
           N +T  + + + A F K  G+++D            + +  I+  C    L+  D+  A 
Sbjct: 32  NCRTIRDLSQIHAVFIKS-GQMRDT-----------LAAAEILRFCATSDLHHRDLDYAH 79

Query: 60  DFFQRLPIKDTASWNTMISGFVQ--KKNMAKARDLFLAM-----PEKNSVSW-------- 104
             F ++P ++  SWNT+I GF +  +     A  LF  M      E N  ++        
Sbjct: 80  KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 139

Query: 105 ---------------------------SAMISGYIECGQLDKAVELFKVAPVK------- 130
                                      S ++  Y+ CG +  A  LF    ++       
Sbjct: 140 KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199

Query: 131 -------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                   +V W  MI GYM+ G    A  LFD+M  +++V+WN MI+GY  N + +D +
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           ++ R M    IRPN  +L SVL   S L SL+LG+ +H     S +  D    + LI MY
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMY 319

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +E A  +F  + R++V+TW+AMI+G+A HG+   A+  F KM+  G++P  + ++
Sbjct: 320 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYI 379

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
            LL AC+H GLV+ G +YF  MV+  G+  + +HY CMVDLLGR+G L EA + I  MP 
Sbjct: 380 NLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 439

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           KP   I+  LL ACR+   +++ +  A  L ++ P + +G YV L+N+YA+   W +V+ 
Sbjct: 440 KPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHD-SGAYVALSNMYASQGNWSEVSE 498

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +RL MKE ++ K PG S I++  V+HEF   D  HP+   I+  L E+  +++LAGY P 
Sbjct: 499 MRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPI 558

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
               L  + EE KE +L +HSEK+A AFGLI    G PIR+ KNLR+C DCH + K IS 
Sbjct: 559 TTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISK 618

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KR+I VRD  RFHHF+DG+CSC DYW
Sbjct: 619 VYKRKITVRDRKRFHHFQDGSCSCMDYW 646


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/620 (37%), Positives = 336/620 (54%), Gaps = 57/620 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-----IPQPDVVSYNIMLSCILLNSDDVVAA 58
           +  V+WN++L  +A Q G + +A  LF +     IP   V   N    C  L    ++ A
Sbjct: 289 RDVVSWNAMLGAYA-QHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHA 347

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
               + L  +D    N ++  + +  +  +AR LF  +P  N+VSW+ MI+G  + GQ+ 
Sbjct: 348 CALEKGLD-RDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMK 405

Query: 119 KAVELFK------VAPVKSV-------------------------------------VAW 135
           +A+ELF+      +APV++                                         
Sbjct: 406 RALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIG 465

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKN---LVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           TA++  Y   G +D A   F     ++   +V+WNA+I+   ++   +  L   R M   
Sbjct: 466 TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLH 525

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ PN  +  +VL  C+  ++L  G  VH  +  S +  +    T L SMY +CG LE A
Sbjct: 526 GVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESA 585

Query: 253 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
            ++F ++   +DVV +NAMI+ Y+Q+G   +AL+LF +M+ EG +PD  +FV++L AC+H
Sbjct: 586 REIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSH 645

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GL D G + F SM   YGIA   DHY C VD+LGRAG L +A +LI+ M  KP   ++ 
Sbjct: 646 GGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWK 705

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           TLL ACR ++ +D    A   +  L+P + +  YV L+NI A   KWD+ A +R  M+  
Sbjct: 706 TLLGACRKYRDVDRGRLANSMVRELDPGDESA-YVVLSNILAGAGKWDEAAEVRTEMESR 764

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K  G SWIE+ + VHEF +GDR HP    I+ +L+ L   ++  GYVPD    L  V
Sbjct: 765 GLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKV 824

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            E  KE+LL  HSE+LAIA G++     T +RV KNLRVC DCH ATK+IS I  +EI+V
Sbjct: 825 DEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVV 883

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RDT RFHHF DG+CSCGDYW
Sbjct: 884 RDTHRFHHFVDGSCSCGDYW 903



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 203/452 (44%), Gaps = 64/452 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNS 52
           + V+   +W +++  + +  G+ K A  +F ++ Q  V    +    +L        L+ 
Sbjct: 88  LEVRDEASWTTIITAYTEH-GQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQ 146

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              + A+     L  K   + N ++  +     +A A  LF  M E++ VSW+A I+   
Sbjct: 147 GRSIHAWIVESGLEGKSVLA-NLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANA 204

Query: 113 ECGQLDKAVELFK------VAPVK------------------------------SVVAWT 136
           + G LD A+ELF+      V P +                              ++V  T
Sbjct: 205 QSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVST 264

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+ S Y + G +D A+++FD    +++V+WNAM+  Y ++    +   L   M+  GI P
Sbjct: 265 ALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPP 324

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +  +L +   GC   SSL+ G+ +H    +  L +D      L+ MY +CG  E+A  LF
Sbjct: 325 SKVTLVNASTGC---SSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC----NHA 312
             I   + V+WN MI+G +Q G+ ++AL LF +M+ EGM P   T++ LL A       A
Sbjct: 382 EGIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEA 440

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP----- 367
             +  G +    +V+  G A++P   T +V +    G + EA    ++   + +      
Sbjct: 441 RAMAEGRKLHSRIVS-CGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 368 -AIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            AI  +L  +   H +  L  F  M+L  + P
Sbjct: 500 NAIISSL--SQHGHGKRALGFFRRMDLHGVAP 529



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 40/351 (11%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECG 115
           + F RL ++D ASW T+I+ + +     +A  +F  M ++    ++V++ A++      G
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 116 QLDKAVELF-----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
            L +   +           KSV+A   ++  Y   G V  A  LF+ M  ++LV+WNA I
Sbjct: 143 DLSQGRSIHAWIVESGLEGKSVLA-NLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAI 200

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A   ++   +  L+L + M   G+RP   +L   L  C+    ++  + +H +V +S L 
Sbjct: 201 AANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCA---KIRQARAIHSIVRESGLE 257

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +     T L S Y + G L+ A ++F     +DVV+WNAM+  YAQHG   +A  LF +M
Sbjct: 258 QTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 291 KDEGMKPDSITFVALLLACN--------HAGLVDLG----IQYFDSMVNDYGIAAKPDH- 337
             EG+ P  +T V     C+        HA  ++ G    I   +++++ Y     P+  
Sbjct: 318 LHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEA 377

Query: 338 -------------YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
                        +  M+    + G++  A++L ++M  +    +  T L+
Sbjct: 378 RHLFEGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLN 428



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 125/285 (43%), Gaps = 43/285 (15%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y+K   +   E++F  +  ++  +W  +I  Y E+  A+  + +   M   G+R +A + 
Sbjct: 72  YLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTF 131

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            +VL  C+ L  L  G+ +H  + +S L   +     L+ +Y  CG +  A  LF  ++R
Sbjct: 132 LAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER 191

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--------HAG 313
            D+V+WNA I+  AQ G  + AL LF +M+ EG++P  IT V  L  C         H+ 
Sbjct: 192 -DLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSI 250

Query: 314 LVDLGIQ-----------------YFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEA 354
           + + G++                 + D     +  AA+ D   +  M+    + G + EA
Sbjct: 251 VRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEA 310

Query: 355 VDLIKKMPFKPQPAI---------------FGTLLSACRVHKRLD 384
             L  +M  +  P                 FG ++ AC + K LD
Sbjct: 311 ALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLD 355



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L  G+++H  +    L ++      L+ +Y KC  L D  ++F  ++ +D  +W  +I+ 
Sbjct: 45  LSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y +HG+ ++A+ +F +M+ EG++ D++TF+A+L AC   G +  G +   + + + G+  
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RSIHAWIVESGLEG 161

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           K      ++ + G  G +  A+ L ++M
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFERM 189


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/539 (39%), Positives = 324/539 (60%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L     +  A   F ++    +  +NTMI G V    + +A  L++ M E+  
Sbjct: 35  NLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGV 94

Query: 100 --NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             +  ++  ++      G +D+ +++    FK+     V+   ++I+ Y K G++  A  
Sbjct: 95  EPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACD 154

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLS 212
           +F+ M  K++ +W+A+I  +       + L LL  M   G  R   S+L +VL  C+HL 
Sbjct: 155 VFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLG 214

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           S  LGK +H ++ ++    +    T LI MY K G LE   ++F  +  K+  ++  MIS
Sbjct: 215 SPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMIS 274

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG+G++AL++F +M +EG+ PD + +V +  AC+HAGLV+ G+Q F SM  ++ I 
Sbjct: 275 GLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIE 334

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY CMVDLLGR G L EA +LIK M  KP   I+ +LLSAC+VH  L++ + AA N
Sbjct: 335 PTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAEN 394

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           LF LN  N+ G Y+ LAN+YA  +KWDDVA+IR  + E N+V+ PG+S IE    V++F 
Sbjct: 395 LFMLNQNNS-GDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFV 453

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D+  P+   I+E + ++E ++K  GY+PD    L  V +E K++ L FHS+KLAIAFG
Sbjct: 454 SQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFG 513

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI    G+P+R+ +NLR+C DCH  TKYIS I +REI VRD  RFHHFK+G+CSC DYW
Sbjct: 514 LIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 327/576 (56%), Gaps = 20/576 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNSDDVVAAFD-------- 60
           N++L  + K  G ++DA +LFD +P+ D V++ +++ +C L N      +          
Sbjct: 42  NTLLNAYGKC-GLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGF 100

Query: 61  ----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
               F     +K  A+   +    V++     AR  FL+    + V  S++I  Y + G 
Sbjct: 101 HPDHFVFASLVKACANLGVL---HVKQGKQVHAR-FFLSPFSDDDVVKSSLIDMYAKFGL 156

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
            D    +F      + ++WT MISGY + G+   A +LF + P +NL  W A+I+G V++
Sbjct: 157 PDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQS 216

Query: 177 SWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
               D   L   M   GI   +   LSSV+  C++L+  +LGKQ+H +V           
Sbjct: 217 GNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFI 276

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              LI MY KC DL  A  +F E+ RKDVV+W ++I G AQHG+ E+AL L+D+M   G+
Sbjct: 277 SNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGV 336

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           KP+ +TFV L+ AC+HAGLV  G   F +MV D+GI+    HYTC++DL  R+G L EA 
Sbjct: 337 KPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAE 396

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
           +LI+ MP  P    +  LLS+C+ H    +A   A +L NL P + +  Y+ L+NIYA  
Sbjct: 397 NLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSS-YILLSNIYAGA 455

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
             W+DV+++R  M      K PGYS I++G   H F +G+  HP    I   ++EL++ M
Sbjct: 456 GMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEM 515

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           +  GY PD    LH + ++ KE+ L +HSE+LA+A+GL+K   GT IR+ KNLRVCGDCH
Sbjct: 516 RKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCH 575

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
              K ISAI  REI VRD  R+HHFKDG CSC D+W
Sbjct: 576 TVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 33/199 (16%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A SL S L   +  S L L K++H  + K+ L +       L++ Y KCG ++DA +LF 
Sbjct: 4   AQSLQSQLCSAARQSPL-LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFD 62

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV-- 315
            + R+D V W ++++      +  +AL +   +   G  PD   F +L+ AC + G++  
Sbjct: 63  ALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHV 122

Query: 316 ----DLGIQYF-----------DSMVNDYGIAAKPDH---------------YTCMVDLL 345
                +  ++F            S+++ Y     PD+               +T M+   
Sbjct: 123 KQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGY 182

Query: 346 GRAGKLVEAVDLIKKMPFK 364
            R+G+  EA  L ++ P++
Sbjct: 183 ARSGRKFEAFRLFRQTPYR 201


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/565 (37%), Positives = 334/565 (59%), Gaps = 11/565 (1%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W +++A  + Q G+L++A+ L+D IP+ D+V++  ++    +N   +  +   +  +P
Sbjct: 151 VAWTALIA-VSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGQ-LTESKRVYALMP 208

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++  S   MI  + Q   + +AR +   +P+ +  + ++MI  Y + G +  A E+F  
Sbjct: 209 ERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDS 268

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                V+A  AM+  Y     +D A+ +FD +  K LV+WN M+A Y +    ++   + 
Sbjct: 269 IKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIF 328

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             +      P+ + +S  ++  ++  ++ L +   + +F S   KDT   T +++M  + 
Sbjct: 329 DSI------PHKNVVSHNVMVVAYAHNMDLAEA--RRIFYSMDEKDTVTWTAMVAMLAQH 380

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L +A +LF ++  ++VV+WN++I+G A  G G  A+R    M++EG KPD ITF+ +L
Sbjct: 381 GRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGIL 440

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
           +AC+H GLV+ G  +F SM  D+G+    +HY  MVD+LGRAG+L  A +L++ MPF P 
Sbjct: 441 IACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPD 500

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              +G+LL +C+ H  + L   AA +L   +   ++G YV LAN+Y+++ +  D   +R 
Sbjct: 501 VGAWGSLLGSCKTHSDVKLGTRAAESLLQFDD-QSSGPYVLLANMYSSVGRVADALAVRN 559

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            MK   V K PG S I V  V+H F +G+  HP    I  +L  L++ MK AGY PD + 
Sbjct: 560 RMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKA 619

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH+V +E KE LL +HSEKLAIAF  I    GTPIR+ KNLRVC DCH ATK++S + +
Sbjct: 620 VLHSVLDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQ 679

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REIIVRD  RFH+F++GTCSCGDYW
Sbjct: 680 REIIVRDGYRFHNFENGTCSCGDYW 704



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 191/362 (52%), Gaps = 22/362 (6%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++ +WNS++ G+A Q G L  A  +FD+ P+ +V+S+N +++    N     A    F  
Sbjct: 55  SSSSWNSMITGYA-QSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDE 113

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P ++  SWN ++S + Q  ++  AR  F  MP  + V+W+A+I+   + GQL++A  L+
Sbjct: 114 MPRREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLY 173

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
            + P + +VAWTA+I  Y   G++  +++++  MP +N V+  AMI  Y +N       K
Sbjct: 174 DLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARK 233

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           +L  +      P+ S+ +S+++  +    ++  ++    +F S    D  A   ++  Y 
Sbjct: 234 MLDTLPD----PDQSTRTSMIVAYAQNGYIKDARE----MFDSIKNPDVIACNAMMEAYS 285

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
               L+ A  +F  I++K +V+WN M++ YAQ G  ++A  +FD +  + +   ++  VA
Sbjct: 286 SAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVA 345

Query: 305 LLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
                 +A  +DL    + F SM     +      +T MV +L + G+L EA +L  KMP
Sbjct: 346 ------YAHNMDLAEARRIFYSMDEKDTVT-----WTAMVAMLAQHGRLAEAQELFAKMP 394

Query: 363 FK 364
           ++
Sbjct: 395 YR 396



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 181/354 (51%), Gaps = 33/354 (9%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDFFQRLPIKDTASW 73
           + G L  A+ +FD+IP  +VVS+N +++       + N+D++      F R+P   ++SW
Sbjct: 6   ENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEI------FARMPRWSSSSW 59

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE-LFKVAPVKSV 132
           N+MI+G+ Q  ++A A  +F   PE N +SW+A+I+GY +   + +A   +F   P +  
Sbjct: 60  NSMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREE 119

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V+W A++S Y + G V LA   F+ MP  ++V W A+IA   +N   E+   L  ++   
Sbjct: 120 VSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLI--- 176

Query: 193 GIRPNASSLSSVLLGCSHLSSLQL--GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              P    ++   L  ++  + QL   K+V+ L+ +    ++  + T +I  Y + G++ 
Sbjct: 177 ---PERDLVAWTALIQAYGVNGQLTESKRVYALMPE----RNRVSHTAMIIAYSQNGEVV 229

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A K+   +   D  T  +MI  YAQ+G  + A  +FD +K+    PD I   A++ A +
Sbjct: 230 QARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKN----PDVIACNAMMEAYS 285

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            A ++D     FDS+     ++     +  MV    +AG L EA  +   +P K
Sbjct: 286 SAQMLDHAKAMFDSIKQKTLVS-----WNTMVAAYAQAGNLDEAKSIFDSIPHK 334



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           + +Y + GDL  A  +F +I   +VV+WN++I+G++QHG    A  +F +M
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARM 51


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/525 (39%), Positives = 316/525 (60%), Gaps = 10/525 (1%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMI-- 108
           V+ A + F ++  KD  SW ++I+G+ Q     +A  L   M +     N  ++++++  
Sbjct: 102 VLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 109 -SGYIECGQLDKAVEL-FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
              Y + G   +   L  K    + V   +A++  Y + GK+D+A  +FD++ +KN V+W
Sbjct: 162 AGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSW 221

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NA+I+G+      E  L     M+  G      + SSV    + L +L+ GK VH  V K
Sbjct: 222 NALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIK 281

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S           L+ MY K G + DA K+F  +  KD+VTWN+M++ +AQ+G G++A+  
Sbjct: 282 SRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSH 341

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F++M+  G+  + ITF+ +L AC+H GLV  G +YF+ M+ +Y +  + DHY  +V LLG
Sbjct: 342 FEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHYVTVVALLG 400

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG L  A+  I KMP +P  A++G LL+ACR+HK   + +FAA ++F L+P ++ G  V
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDS-GPPV 459

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L NIYA+  +WD  AR+R+ MK   V K P  SW+E+   VH F + D  HP+   I++
Sbjct: 460 LLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYK 519

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
              E+ K+++  GYVPD+++ L  V ++ KE  L +HSEKLA+AF LI++P G  IR+ K
Sbjct: 520 MWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMK 579

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           N+R+CGDCH A KYIS +  REI+VRDT RFHHF  G+CSCGDYW
Sbjct: 580 NIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 98/183 (53%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++I  Y K   V  A  +FD+M  K++V+W ++IAGY +N    + + LL  M+    +
Sbjct: 90  NSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFK 149

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + +S+L      +    G+Q+H L  K    +D    + L+ MY +CG ++ A  +
Sbjct: 150 PNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAV 209

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++  K+ V+WNA+ISG+A+ G GE AL  F +M   G +    T+ ++  +    G +
Sbjct: 210 FDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 316 DLG 318
           + G
Sbjct: 270 EQG 272



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L+ L ++    + P      S +  C+   +L+  +++H  +  S    D      LI M
Sbjct: 36  LRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           YCKC  + DA  +F +++RKD+V+W ++I+GYAQ+    +A+ L   M     KP+  TF
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHY--TCMVDLLGRAGKLVEAVD 356
            +LL A         G Q        + +A K     D Y  + ++D+  R GK+  A  
Sbjct: 156 ASLLKAAGAYADSGTGRQI-------HALAVKCGWHEDVYVGSALLDMYARCGKMDMATA 208

Query: 357 LIKKMPFK 364
           +  K+  K
Sbjct: 209 VFDKLDSK 216



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 43/267 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK+  A  +FDK+   + VS                                WN +ISGF
Sbjct: 201 GKMDMATAVFDKLDSKNGVS--------------------------------WNALISGF 228

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
            +K +   A   F  M     E    ++S++ S     G L++  +      +KS    T
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG-KWVHAHVIKSRQKLT 287

Query: 137 AMISG-----YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           A +       Y K G +  A K+FD +  K+LVTWN+M+  + +    ++ +     M  
Sbjct: 288 AFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRK 347

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G+  N  +   +L  CSH   ++ GK+  +++ +  L  +      ++++  + G L  
Sbjct: 348 SGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNY 407

Query: 252 ACKLFLEI-QRKDVVTWNAMISGYAQH 277
           A     ++        W A+++    H
Sbjct: 408 ALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 63/345 (18%), Positives = 142/345 (41%), Gaps = 68/345 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++ K  V+WN++++GFA+ +G  + A   F ++ +    + +   S +          F 
Sbjct: 213 LDSKNGVSWNALISGFAR-KGDGESALMTFAEMLRNGFEATHFTYSSV----------FS 261

Query: 61  FFQRLPIKDTASW-----------------NTMISGFVQKKNMAKARDLFLAMPEKNSVS 103
              RL   +   W                 NT++  + +  +M  AR +F  +  K+ V+
Sbjct: 262 SIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVT 321

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP 159
           W++M++ + + G   +AV  F+      V    + +  +++     G V   ++ F+ M 
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK 381

Query: 160 TKNL-------VTWNAMI--AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
             +L       VT  A++  AG +  +        L  +  + + P A+   ++L  C  
Sbjct: 382 EYDLEPEIDHYVTVVALLGRAGLLNYA--------LVFIFKMPMEPTAAVWGALLAACRM 433

Query: 211 LSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFL-----EIQRKDV 264
             + ++G+     VF+  P   D+     L ++Y   G  + A ++ +      ++++  
Sbjct: 434 HKNAKVGQFAADHVFELDP--DDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPA 491

Query: 265 VTWNAM-------ISGYAQHGKGEKALRLF----DKMKDEGMKPD 298
            +W  M       ++    H + E+  +++     K++ EG  PD
Sbjct: 492 CSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPD 536


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/612 (36%), Positives = 341/612 (55%), Gaps = 46/612 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLS-CILLNSDDVVAA 58
           +T+V W  ++  +  Q G      ELF    D   +PD  S + M+S C  L S  +   
Sbjct: 209 RTSVVWTLLITRYV-QAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQ 267

Query: 59  FDFFQ-RLP-IKDTASWNTMISGFVQ---KKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 RL  + D+     ++  + +   +++M  AR +F  MP  N +SW+A+ISGY++
Sbjct: 268 LHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQ 327

Query: 114 CG-QLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----V 164
            G Q +  + LF+    +S+    + ++ ++         D   ++   +   ++    V
Sbjct: 328 SGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNV 387

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGI----------RPNAS--------------- 199
             NA+++ Y E+   E+  K    +    I          R NAS               
Sbjct: 388 VGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVSTF 447

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           + +S+L   + +  L  G+++H L  K+    D      L+SMY +CG LEDAC+ F E+
Sbjct: 448 TFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEM 507

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
           +  +V++W ++ISG A+HG  ++AL +F  M   G+KP+ +T++A+L AC+H GLV  G 
Sbjct: 508 KDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGK 567

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           ++F SM  D+G+  + +HY C+VDLL R+G + EA   I +MP K    ++ TLLSACR 
Sbjct: 568 EHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRT 627

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           +   ++ E AA ++ NL P + A  YV L+N+YA    WD+VARIR  M++ N+ K  G 
Sbjct: 628 YGNTEIGEIAANHVINLEPRDPAP-YVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGL 686

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           SW++VG  +HEFR+GD  HP  + I+ KL  L + +K  GYVPD    LH + EE+KEQ 
Sbjct: 687 SWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQY 746

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           LL HSEK+A+AFGLI      P+R+FKNLRVC DCH A KYIS    REII+RD+ RFH 
Sbjct: 747 LLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHR 806

Query: 560 FKDGTCSCGDYW 571
            KDG CSCG+YW
Sbjct: 807 MKDGICSCGEYW 818



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 158/338 (46%), Gaps = 27/338 (7%)

Query: 42  NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ + C L++    + D+VAA   F  L  + +  W  +I+ +VQ    +K  +LFL M 
Sbjct: 179 DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHML 238

Query: 98  ----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG----YMKFG--- 146
               E +  S S+MIS   E G +    +L  VA    +V+ + +  G    Y K     
Sbjct: 239 DDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMER 298

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG-LKLLRMMIGLGIRPNASSLSSVL 205
            ++ A K+F  MP  N+++W A+I+GYV++   E+  + L R M+   IRPN  + S++L
Sbjct: 299 SMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLL 358

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C++LS    G+Q+H  V K+ +         L+SMY + G +E+A K F ++   +++
Sbjct: 359 KACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNIL 418

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP--DSITFVALLLACNHAGLVDLGIQYFD 323
           + +  +     +             K EGM     + TF +LL A    GL+  G Q   
Sbjct: 419 SMSPDVETERNNASCSS--------KIEGMDDGVSTFTFASLLSAAASVGLLTKG-QKLH 469

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           ++    G  +       +V +  R G L +A     +M
Sbjct: 470 ALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEM 507



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 8/267 (2%)

Query: 105 SAMISGYIECGQ-LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM-PTKN 162
           SA  +G +  G+ L + +   ++    +VVA  ++++ Y K G V+ A ++FD+M   ++
Sbjct: 49  SAARAGDLRLGRALHRRLLRSEILDTDAVVA-NSLLTMYSKCGAVEAARRVFDQMCGVRD 107

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVH 221
           LV+W AM +    N    + L+LL  M+ LG+RPNA +L +    C      +L G  V 
Sbjct: 108 LVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVL 167

Query: 222 QLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
             V K+     D +    LI M+ + GDL  A ++F  +  +  V W  +I+ Y Q G  
Sbjct: 168 GFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCA 227

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
            K + LF  M D+G +PD  +  +++ AC   G V LG Q   S+    G+ +       
Sbjct: 228 SKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLG-QQLHSVALRLGLVSDSCVSCG 286

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           +VD+  +  K+  +++  +K+ FK  P
Sbjct: 287 LVDMYAKL-KMERSMEHARKV-FKTMP 311


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 339/643 (52%), Gaps = 75/643 (11%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDA-QELFDKIP---QPDVVSYNIMLSCI----LLNSD 53
            V   V WN++++    Q G+ ++A Q L+D +    +PD V++   L       LL   
Sbjct: 221 GVGDLVTWNTMIS-LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVG 279

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNSVSWSAMISGY 111
             V AF         ++   + ++  +   + ++ AR +F  +PE  +    W+AMI GY
Sbjct: 280 REVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGY 339

Query: 112 IECGQLDK-AVELFK-------VAPVKSVVA----------------------------- 134
            + G +D+ A+ELF         AP ++ +A                             
Sbjct: 340 AQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMAS 399

Query: 135 ----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
                 A++  Y + G++D A  +F  +  +++V+WN +I G +      +  +L+R M 
Sbjct: 400 NRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQ 459

Query: 191 --------------------GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
                               G    PN  +L ++L GC+ L++   GK++H    +  L 
Sbjct: 460 LPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALE 519

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            D    + L+ MY KCG L  A  +F  + R++V+TWN +I  Y  HG G++AL LFD+M
Sbjct: 520 SDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRM 579

Query: 291 KDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
              G   P+ +TF+A L AC+H+GLVD G++ F  M  DYG    P  + C+VD+LGRAG
Sbjct: 580 VANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAG 639

Query: 350 KLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
           +L EA  +I  M P + Q + + T+L ACR+H+ + L   AA  LF L P + A  YV L
Sbjct: 640 RLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEP-DEASHYVLL 698

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
            NIY+A   W++   +R  M++  V K PG SWIE+   +H F +G+  HPE   +H  +
Sbjct: 699 CNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHM 758

Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
             L +RM+  GYVPD    LH V E  K  +L +HSEKLAIAFGL++ P G  IRV KNL
Sbjct: 759 DALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNL 818

Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RVC DCH A K+IS +  REI++RD  RFHHF+DGTCSCGDYW
Sbjct: 819 RVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 21/332 (6%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL-DKAVELFK 125
           ++D  S+N++IS     +    A D    M   + VS   ++S  + C  L D+   L +
Sbjct: 115 LRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVSSFTLVSVLLACSHLADQGHRLGR 174

Query: 126 VAPV-----------KSVVAWTAMISGYMKFGKVDLAEKLF--DEMPTKNLVTWNAMIAG 172
            A             +    + A++S Y + G VD A++LF        +LVTWN MI+ 
Sbjct: 175 EAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISL 234

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCK 231
            V+    E+ +++L  M+ LG+RP+  + +S L  CS L  L +G++VH  V K   L  
Sbjct: 235 LVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAA 294

Query: 232 DTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGK-GEKALRLFD 288
           ++   + L+ MY     +  A ++F  +    + +  WNAMI GYAQHG   E+A+ LF 
Sbjct: 295 NSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFS 354

Query: 289 KMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           +M+ E G  P   T   +L AC  +  V  G +     V    +A+       ++D+  R
Sbjct: 355 RMEAEAGCAPSETTMAGVLPACARSE-VFTGKEAVHGYVVKRDMASNRFVQNALMDMYAR 413

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
            G++ EA  +   +  +     + TL++ C V
Sbjct: 414 LGRMDEAHTIFAMIDLR-DIVSWNTLITGCIV 444


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 321/545 (58%), Gaps = 14/545 (2%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D V+ NI+++ +         A   F  + ++   SWNTMI+G+   +   +A  LF  M
Sbjct: 90  DTVTCNILIN-LYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRM 148

Query: 97  PEKN--------SVSWSAMISGY--IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
             +         S +  A  + Y  IEC QL       K+A   S    TA +  Y K  
Sbjct: 149 HREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIA--IKLALDSSSFVGTAFLDVYAKCN 206

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            +  A  +F+ MP K  VTW+++ AG+V+N   E+ L L +     G++    ++SS+L 
Sbjct: 207 MIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILS 266

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+ L+ +  G QVH ++ K    ++    T L+ +Y KCG +E + ++F +++ K+VV 
Sbjct: 267 TCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVL 326

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WNAMI+ +++H    +A+ LF+KM+  G+ P+ +T++++L AC+H GLV+ G  YF+ ++
Sbjct: 327 WNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLL 386

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           +D        HY+CMVD+LGR+GK  EA  L+ KMPF+P  +++G+LL + R+HK + LA
Sbjct: 387 SDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLA 446

Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
             AA  LF L P N  G +V L+N+YAA   W++V   R  ++++   K  G SWIE   
Sbjct: 447 RIAAEQLFRLEPEN-GGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKG 505

Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
            +H F +G+R HP +  ++ KL+E+   M+   +  + +  LH V  + KE+LL  HSEK
Sbjct: 506 KIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEK 565

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LA AFGLI +P   PI ++KNLR+CGDCH   K +S I +R++IVRD  RFHHFKDG+CS
Sbjct: 566 LAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCS 625

Query: 567 CGDYW 571
           CGD+W
Sbjct: 626 CGDFW 630



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 1/236 (0%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           V   V    +I+ Y K G+ D A ++FD M  +++++WN MIAGY  N    + LKL   
Sbjct: 88  VTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSR 147

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G +    +LSS L  C+   ++   KQ+H +  K  L   +   T  + +Y KC  
Sbjct: 148 MHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNM 207

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++DAC +F  +  K  VTW+++ +G+ Q+G  E+ L LF   + EGM+    T  ++L  
Sbjct: 208 IKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILST 267

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           C    L+  G Q   +++  +G        T +VD+  + G++ ++ ++   M  K
Sbjct: 268 CASLALIIEGTQ-VHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEK 322



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 77/339 (22%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V++ ++WN+++AG+   R  + +A +LF ++ +         LS  L       A  +
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDV-EALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIE 175

Query: 61  FFQ------RLPIKDTASWNTMISGFVQKKNMAK-ARDLFLAMPEKNSVSWSAMISGYIE 113
             Q      +L +  ++   T       K NM K A  +F  MPEK SV+WS++ +G+++
Sbjct: 176 CKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQ 235

Query: 114 CGQLDKAVELFK-------------VAPVKSVVA-------------------------- 134
            G  ++ + LF+             V+ + S  A                          
Sbjct: 236 NGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFV 295

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            T+++  Y K G+++ + ++F +M  KN+V WNAMIA +  ++ + + + L   M  +GI
Sbjct: 296 ATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGI 355

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +  S+L  CSH   ++ G+    L     L  D TA                   
Sbjct: 356 FPNEVTYLSILSACSHTGLVEEGRHYFNL-----LLSDRTA------------------- 391

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                   +V+ ++ M+    + GK ++A +L DKM  E
Sbjct: 392 ------EPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFE 424



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +L  +L  C+   SL +GK  H L     L  DT     LI++Y KCG  + A ++F  +
Sbjct: 58  TLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAM 117

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             + +++WN MI+GY  + +  +AL+LF +M  EG +    T  + L AC
Sbjct: 118 SVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCAC 167


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 323/572 (56%), Gaps = 27/572 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +FD++P+ +  ++N ++  +    D  + A   F ++  + T   N      V K  
Sbjct: 68  ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKAC 127

Query: 86  MAKAR--------DLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELF-----KVAPVKS 131
              AR         L L      +    + ++  Y+ CG ++ A  LF      V  V++
Sbjct: 128 AVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRN 187

Query: 132 -----------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                      VV    M+ GY + G +  A +LFD M  +++V+WN MI+GY +N + +
Sbjct: 188 LVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYK 247

Query: 181 DGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + +++   M+ +G + PN  +L SVL   S L  L+LGK VH    K+ +  D    + L
Sbjct: 248 EAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSAL 307

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           + MY KCG +E A ++F  + + +V+TWNA+I G A HGK         +M+  G+ P  
Sbjct: 308 VDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSD 367

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +T++A+L AC+HAGLVD G  +F+ MVN  G+  K +HY CMVDLLGRAG L EA +LI 
Sbjct: 368 VTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELIL 427

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP KP   I+  LL A ++HK + +   AA  L  + P ++ G YV L+N+YA+   WD
Sbjct: 428 NMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDS-GAYVALSNMYASSGNWD 486

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
            VA +RL MK+ ++ K PG SWIE+  V+HEF   D  H     IH  L+E+  ++ L G
Sbjct: 487 GVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEG 546

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           ++PD    L  + E+ KE +L +HSEK+A+AFGLI  P  TP+ + KNLR+C DCH + K
Sbjct: 547 HMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMK 606

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IS + +R+I++RD  RFHHF+ G+CSC DYW
Sbjct: 607 LISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 51/274 (18%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE--NSWAEDGLKLLRMMIGLGIRP 196
           +S    F  +  A  +FD++P +N   WN +I    E  +   +  L   +M+    + P
Sbjct: 56  LSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEP 115

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA---- 252
           N  +  SVL  C+ ++ L  GKQVH L+ K  L  D   +T L+ MY  CG +EDA    
Sbjct: 116 NQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF 175

Query: 253 --------------------------C-----------------KLFLEIQRKDVVTWNA 269
                                     C                 +LF  + ++ VV+WN 
Sbjct: 176 YRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNV 235

Query: 270 MISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           MISGYAQ+G  ++A+ +F +M   G + P+ +T V++L A +  G+++LG ++       
Sbjct: 236 MISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYAEK 294

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             I       + +VD+  + G + +A+ + +++P
Sbjct: 295 NKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLP 328



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 141/351 (40%), Gaps = 74/351 (21%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC---------------------- 47
           N ++ G+A+  G LK A+ELFD++ Q  VVS+N+M+S                       
Sbjct: 203 NVMVDGYARV-GNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGD 261

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
           +L N   +V+      RL + +   W  + +    +KN  +  D+            SA+
Sbjct: 262 VLPNRVTLVSVLPAISRLGVLELGKWVHLYA----EKNKIRIDDVL----------GSAL 307

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           +  Y +CG ++KA+++F+  P  +V+ W A+I G    GK                    
Sbjct: 308 VDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGK-------------------- 347

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFK 226
                      A D    L  M   GI P+  +  ++L  CSH   +  G+   + +V  
Sbjct: 348 -----------ANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNS 396

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
             L         ++ +  + G LE+A +L L +  K D V W A++     H   +  +R
Sbjct: 397 VGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMR 456

Query: 286 LFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
             + +    M P DS  +VAL      +G  D G+     M+ D  I   P
Sbjct: 457 AAEVLMQ--MAPHDSGAYVALSNMYASSGNWD-GVAAVRLMMKDMDIRKDP 504


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/481 (43%), Positives = 286/481 (59%), Gaps = 3/481 (0%)

Query: 93  FLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
           F+A P   + V  S++I  Y +CG  + A ++F    VK+ V WTA++SGY   G    A
Sbjct: 37  FVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEA 96

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSH 210
             LF  MP + L  W A+I+G+V+       + L   M   G+R  +A  L++V+ G + 
Sbjct: 97  IDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAE 156

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L++L LG+Q+H                 L+ MY KC D+  A ++F  I  +DVV+W  +
Sbjct: 157 LAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTI 216

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           + G AQHG+ E+ L L+D+M   GMKP+ +TFV L+ AC+HAGLV  G Q FDSM  +YG
Sbjct: 217 LVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYG 276

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           I     HYTC +DLL R+G L EA +LI  MP++P  A +G LLSAC+ H    +    A
Sbjct: 277 IKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVA 336

Query: 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
            NL  L P + +  Y+ L+N+YA   KWD VA++R  M E  + K PGYSWIE G     
Sbjct: 337 DNLLELRPKDPS-TYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRM 395

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
           F +G+        I   L+EL   M+  GYVPD    +H + E  KEQ L  HSE+LA+A
Sbjct: 396 FHAGEVPLDIGEEITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVA 455

Query: 511 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
           FG++K P G+ IRV KNLRVCGDCH   K+IS I +R+IIVRD +RFHHF+DG CSC ++
Sbjct: 456 FGILKSPPGSVIRVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEF 515

Query: 571 W 571
           W
Sbjct: 516 W 516



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 140/300 (46%), Gaps = 21/300 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  +DA+++FD I   + V +  ++S    N      A D F+ +P +   +W  +ISGF
Sbjct: 60  GVPEDARKVFDSIGVKNGVVWTALVSGYASNGC-TGEAIDLFRSMPERGLFAWTALISGF 118

Query: 81  VQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIECGQLDKAVELFKVAP----VKS 131
           V+  N   A  LF+ M        ++   + ++ G  E   L    +L   A     + S
Sbjct: 119 VKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLGFLSS 178

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           ++   A++  Y K   +  A ++F  +  +++V+W  ++ G  ++   E+ L L   M+ 
Sbjct: 179 MIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLL 238

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCKCG 247
            G++PN  +   ++  CSH   +Q G+Q+   + +     P  +  T    L+S   + G
Sbjct: 239 AGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLS---RSG 295

Query: 248 DLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 305
            L +A +L   +  + D  +W A++S   +H   +  LR+ D + +  ++P D  T++ L
Sbjct: 296 YLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLE--LRPKDPSTYILL 353



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+Q+H     SP   D    + LI MYCKCG  EDA K+F  I  K+ V W A++SGYA 
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +G   +A+ LF  M + G+   +      + A N+ G V L ++
Sbjct: 90  NGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVE 133


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 345/638 (54%), Gaps = 79/638 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA---FDFFQRLP 66
           NS++  +AK  G +++A+ +F ++   D+VS+N +++ ++LN  D+ A     D    + 
Sbjct: 196 NSLMNMYAKC-GLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSIT 254

Query: 67  IKDTASWNTMIS---------------------GFVQKKN--------------MAKARD 91
           +   ++++T+I+                     GF    N              + KA D
Sbjct: 255 MLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALD 314

Query: 92  LFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFK------VAP---------------- 128
           +FL M   +N VSW+AMI G I+ G +  A  LF       VAP                
Sbjct: 315 VFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASF 374

Query: 129 --------VKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                   +K+         TA++  Y K    + A  +F  +  K++V+W+AM+  Y +
Sbjct: 375 PPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQ 434

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTT 234
                        M   G++PN  ++SS +  C S  + + LG+Q H +  K   C D  
Sbjct: 435 AGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHR-CHDAL 493

Query: 235 ALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            ++  L+SMY + G +E+A  +F     +D+++WN+M+SGYAQHG  +KAL +F +M+ E
Sbjct: 494 CVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVE 553

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+  D +TF+++++ C HAGLV+ G QYFD MV DYGI    DHY CMVDL  RAGKL E
Sbjct: 554 GIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDE 613

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
            + LI+ MPF   P I+  LL ACRVHK ++L + AA  L +L P ++A  YV L+NIY+
Sbjct: 614 TMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSA-TYVLLSNIYS 672

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  KW +   +R  M    V K  G SWI++   VH F + D+ HP    I+ KL+ +  
Sbjct: 673 AAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTA 732

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++K  GY PD  F  H V E+ KE +L  HSE+LA+AFGLI  P   P+ +FKNLRV GD
Sbjct: 733 KLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGD 792

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            H   K +S IE REI++RD  RFHHFK G CSCGD+W
Sbjct: 793 GHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + +N   V+     F+ +  ++  +W ++++G++Q   +     LF  M  +    N  +
Sbjct: 100 MYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFT 159

Query: 104 WSAMIS-----GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +S+++S     G ++ GQ   A +  K     +V    ++++ Y K G V+ A  +F  M
Sbjct: 160 FSSVLSMVASQGMVDLGQHVHA-QSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRM 218

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
            T+++V+WN ++AG V N    + L+L             S+ S+V+  C++L  L L +
Sbjct: 219 ETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLAR 278

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQH 277
           Q+H  V K         +T L+  Y K G L+ A  +FL +   ++VV+W AMI G  Q+
Sbjct: 279 QLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQN 338

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G    A  LF +M+++G+ P+ +T+  +L
Sbjct: 339 GDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 3/252 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T+++  YM +  V    K+F+ M  +N+VTW +++ GY++     D + L   M   G+ 
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW 154

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + SSVL   +    + LG+ VH    K   C        L++MY KCG +E+A  +
Sbjct: 155 PNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 214

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  ++ +D+V+WN +++G   +G+  +AL+LF   +         T+  ++  C  A L 
Sbjct: 215 FCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLC--ANLK 272

Query: 316 DLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            LG+ +   S V  +G  +  +  T ++D   +AG+L +A+D+   M        +  ++
Sbjct: 273 HLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMI 332

Query: 375 SACRVHKRLDLA 386
             C  +  + LA
Sbjct: 333 DGCIQNGDIPLA 344


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/627 (35%), Positives = 346/627 (55%), Gaps = 63/627 (10%)

Query: 1   MNVKTTVNWNSVLAGFA---------------KQRGKLK-DAQELFDKIPQPDVVSYNIM 44
           M ++  V WN++LAG+A               + RG L+ +A  L   +P   +  +  +
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPL--LAQHGAL 217

Query: 45  LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
                +++  + A  D  +   +  TA    ++  + + K++  A  +F  M  +N V+W
Sbjct: 218 FQGTSVHAYCLRAYLDQNEEQVLIGTA----LLDMYAKCKHLVYACRVFHGMTVRNEVTW 273

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKS--------------------------------- 131
           SA+I G++ C ++ +A  LFK   V+                                  
Sbjct: 274 SALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLA 333

Query: 132 -------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                  + A  +++S Y K G ++ A  LFDE+  K+ +++ A+++GYV+N  AE+   
Sbjct: 334 KSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFL 393

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           + + M    ++P+ +++ S++  CSHL++LQ G+  H  V    L  +T+    LI MY 
Sbjct: 394 VFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYA 453

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG ++ + ++F ++  +D+V+WN MI+GY  HG G++A  LF  MK++G +PD +TF+ 
Sbjct: 454 KCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFIC 513

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           L+ AC+H+GLV  G  +FD+M + YGI  + +HY CMVDLL R G L EA   I+ MP K
Sbjct: 514 LIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLK 573

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
               ++G LL ACR+HK +DL +  +  +  L P    G +V L+NI++A  ++D+ A +
Sbjct: 574 ADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGP-EGTGNFVLLSNIFSAAGRFDEAAEV 632

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R+  K     K PG SWIE+   +H F  GD+ HP    I+ +L  +   +K  GY  D 
Sbjct: 633 RIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADT 692

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
            F L  + EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH A KY++ +
Sbjct: 693 SFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLV 752

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
             R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 753 RNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 167/320 (52%), Gaps = 14/320 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYI 112
           A + F ++P++D  +WN M++G+        A    L M ++     N+ +  +++    
Sbjct: 153 AANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLA 212

Query: 113 ECGQLDKAVELFKVA-------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           + G L +   +             + V+  TA++  Y K   +  A ++F  M  +N VT
Sbjct: 213 QHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVT 272

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           W+A+I G+V      +   L + M+  G+   +A+S++S L  C+ L+ L++G Q+H L+
Sbjct: 273 WSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALL 332

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            KS +  D TA   L+SMY K G + +A  LF EI  KD +++ A++SGY Q+GK E+A 
Sbjct: 333 AKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAF 392

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +F KM+   ++PD  T V+L+ AC+H   +  G     S++   G+A +      ++D+
Sbjct: 393 LVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIR-GLALETSICNSLIDM 451

Query: 345 LGRAGKLVEAVDLIKKMPFK 364
             + G++  +  +  KMP +
Sbjct: 452 YAKCGRIDLSRQVFDKMPAR 471



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 27/322 (8%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           VK    W   +  ++  G++ LA ++FD +P  +   +NA+I  Y         + L R 
Sbjct: 30  VKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRS 89

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+   + PN  +   VL  CS L+ L  G+ +H       L  D    T LI +Y +C  
Sbjct: 90  MLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR 149

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALL- 306
              A  +F ++  +DVV WNAM++GYA HG    A+     M+D  G++P++ T V+LL 
Sbjct: 150 FGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLP 209

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-------TCMVDLLGRAGKLVEAVDLIK 359
           L   H  L      +  + V+ Y + A  D         T ++D+  +   LV A  +  
Sbjct: 210 LLAQHGAL------FQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFH 263

Query: 360 KMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            M  + +    A+ G  +   R+ +        A NLF  +      C++   ++ +A++
Sbjct: 264 GMTVRNEVTWSALIGGFVLCDRMTE--------AFNLFK-DMLVEGMCFLSATSVASALR 314

Query: 417 KWDDVARIRLSMKENNVVKMPG 438
               +A +R+  + + ++   G
Sbjct: 315 VCASLADLRMGTQLHALLAKSG 336



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 148/362 (40%), Gaps = 75/362 (20%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW------- 104
           A   F R+P  D  ++N +I  +  +     A DL+ +M      P K +  +       
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSA 111

Query: 105 --------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                     +A+I  YI C +   A  +F   P++ VVAW AM
Sbjct: 112 LADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAM 171

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++GY   G                   ++  IA             LL M    G+RPNA
Sbjct: 172 LAGYANHG------------------MYHHAIA------------HLLDMQDRGGLRPNA 201

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKL 255
           S+L S+L   +   +L  G  VH    ++ L ++   +   T L+ MY KC  L  AC++
Sbjct: 202 STLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRV 261

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA-LLLACNHAGL 314
           F  +  ++ VTW+A+I G+    +  +A  LF  M  EGM   S T VA  L  C     
Sbjct: 262 FHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLAD 321

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           + +G Q   +++   GI A       ++ +  +AG + EA  L  ++  K   + +G LL
Sbjct: 322 LRMGTQ-LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS-YGALL 379

Query: 375 SA 376
           S 
Sbjct: 380 SG 381


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/548 (38%), Positives = 319/548 (58%), Gaps = 13/548 (2%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           PQ    + +++ + + L++    AA   F ++   +  +WNTMI GF + +N + A +LF
Sbjct: 65  PQNPDFNKHLIFALVSLSAPMSFAA-QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELF 123

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----------WTAMISGYM 143
             M   +S+        ++    + K +++     + SVV             +++  Y 
Sbjct: 124 SQMHAASSILPDTHTFPFL-FKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS 182

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
             G +  A ++F+ M  ++ V WN++I G+  N    + L L R M   G+ P+  ++ S
Sbjct: 183 VLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVS 242

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           +L  C  L +L LG++VH  + K  L ++  A   L+ +Y KCG+  DA K+F E++ + 
Sbjct: 243 LLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS 302

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+W ++I G A +G G +AL+LF +++ +G+KP  ITFV +L AC+H G++D G  YF 
Sbjct: 303 VVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFR 362

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            M  +YGI  + +H+ CMVDLL RAGK+ +A D I+ MP  P   I+ TLL AC +H  L
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHL 422

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 443
           +L E A   +  L   + +G +V L+N+YA+ ++W DV  +R  M    V K PGYS +E
Sbjct: 423 ELGEVARAEIQRLEQRH-SGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVE 481

Query: 444 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 503
           +   V+EF  GDR HP+    +  L ++ + +K+ GYVP     L  + EE KE  L  H
Sbjct: 482 LKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHH 541

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           +EK+AIAF L+  P GTPIR+ KNLRVC DCH A K IS + +REIIVRD +RFHHFKDG
Sbjct: 542 TEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDG 601

Query: 564 TCSCGDYW 571
           +CSC DYW
Sbjct: 602 SCSCKDYW 609


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 334/565 (59%), Gaps = 11/565 (1%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W +++A  + Q G+L++A+ L+D IP+ D+V++  ++    +N   +  +   +  +P
Sbjct: 359 VAWTALIA-VSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGK-LTESKRVYALMP 416

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++  S   MI  + Q   + +AR +   +P+ +  + ++MI  Y + G +  A E+F  
Sbjct: 417 ERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDS 476

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                V+A  AM+  Y     +D A+ +FD +  K LV+WN M+A Y +    ++   + 
Sbjct: 477 IKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIF 536

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             +      P+ + +S  ++  ++  ++ L +   + +F S   KDT   T +++M  + 
Sbjct: 537 DSI------PHKNVVSHNVMIVAYAHNMDLAEA--RRIFYSMDEKDTVTWTAMVAMVAQH 588

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L +A +LF ++  ++VV+WN++I+G A  G G  A+R    M++EG KPD ITF+ +L
Sbjct: 589 GRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGIL 648

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
           +AC+H GLV+ G  +F SM  D+G+    +HY  MVD+LGRAG+L  A +L++ MPF P 
Sbjct: 649 IACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPD 708

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              +G+LL +C+ H  + L   AA +L   +   ++G YV LAN+Y+++ +  D   +R 
Sbjct: 709 VGAWGSLLGSCKTHSDVKLGTRAAESLLQFDD-QSSGPYVLLANMYSSVGRVADALAVRN 767

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            MK   V K PG S I V  V+H F +G+  HP    I  +L  L++ MK AGY PD + 
Sbjct: 768 RMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKA 827

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH++ +E KE LL +HSEKLAIAF  I    GTPIR+ KNLRVC DCH ATK++S + +
Sbjct: 828 VLHSILDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQ 887

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REIIVRD  RFH+F++GTCSCGDYW
Sbjct: 888 REIIVRDGYRFHNFENGTCSCGDYW 912



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 178/341 (52%), Gaps = 17/341 (4%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           ++ DAQ +F+++P+P+V S  I++     N D + +A   F ++P  +  SWN++I+GF 
Sbjct: 62  RIDDAQAVFNELPEPNVFSRCILMQAYSENGD-LGSAKAIFDQIPSHNVVSWNSLIAGFS 120

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           Q   M+ A ++F  MP  +S SW++MI+GY + G L  A  +F   P  +V++W A+I+G
Sbjct: 121 QHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPEHNVISWNALITG 180

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y     +  A+ +FD  P ++ ++WNAM+  Y ++   +   ++          P    +
Sbjct: 181 YSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRT------PQQDIV 234

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           S  L+  +      LG  V   +F +   ++  + + +I +Y   G + +A  L   + +
Sbjct: 235 SCTLMIKACAVQEILGHAVE--IFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQ 292

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           +D   W +M+S Y++HG  E+A R+FD+      + D +++ ALL A   AG + L    
Sbjct: 293 QDPTLWTSMLSAYSRHGLVEEARRIFDR---AARRDDEVSWNALLSAYAQAGHLHLARST 349

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           F+ M     +A     +T ++ + G+ G+L EA  L   +P
Sbjct: 350 FERMPRHDVVA-----WTALIAVSGQNGQLEEAEVLYDLIP 385



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 183/350 (52%), Gaps = 29/350 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDFFQRLPIKDTASW 73
           + G L  A+ +FD+IP  +VVS+N +++       + N+D++      F R+P   ++SW
Sbjct: 90  ENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEI------FARMPRWSSSSW 143

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N+MI+G+ Q  ++A A  +F   PE N +SW+A+I+GY +   + +A  +F  AP +  +
Sbjct: 144 NSMITGYAQSGDLASATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKI 203

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W AM++ Y + G +D A+++FD  P +++V+   MI            +++   M    
Sbjct: 204 SWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAM---- 259

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             P+ +++S   +   ++   ++G +   L  + P  +D T  T ++S Y + G +E+A 
Sbjct: 260 --PDRNAVSYSFMIQIYIDQGKIG-EAENLSRRMPQ-QDPTLWTSMLSAYSRHGLVEEAR 315

Query: 254 KLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
           ++F    R+ D V+WNA++S YAQ G    A   F++M     + D + + AL+      
Sbjct: 316 RIFDRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMP----RHDVVAWTALIAVSGQN 371

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           G ++     +D ++ +  + A    +T ++   G  GKL E+  +   MP
Sbjct: 372 GQLEEAEVLYD-LIPERDLVA----WTALIQAYGVNGKLTESKRVYALMP 416



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 195/425 (45%), Gaps = 84/425 (19%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC---------------- 47
           +  ++WN++L  +A Q G L  A+E+FD+ PQ D+VS  +M+                  
Sbjct: 200 RDKISWNAMLTAYA-QSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAA 258

Query: 48  --------------ILLNSDDVVAAFDFFQRLPIKDTA---------------------- 71
                         I ++   +  A +  +R+P +D                        
Sbjct: 259 MPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIF 318

Query: 72  ----------SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                     SWN ++S + Q  ++  AR  F  MP  + V+W+A+I+   + GQL++A 
Sbjct: 319 DRAARRDDEVSWNALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAE 378

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            L+ + P + +VAWTA+I  Y   GK+  +++++  MP +N V+  AMI  Y +N     
Sbjct: 379 VLYDLIPERDLVAWTALIQAYGVNGKLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQ 438

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
             K+L  +      P+ S+ +S+++  +    ++  ++    +F S    D  A   ++ 
Sbjct: 439 ARKMLDTLPD----PDQSTRTSMIVAYAQNGYIKDARE----MFDSIKNPDVIACNAMME 490

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y     L+ A  +F  I++K +V+WN M++ YAQ G  ++A  +FD +  + +   ++ 
Sbjct: 491 AYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVM 550

Query: 302 FVALLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            VA      +A  +DL    + F SM     +      +T MV ++ + G+L EA +L  
Sbjct: 551 IVA------YAHNMDLAEARRIFYSMDEKDTVT-----WTAMVAMVAQHGRLAEAQELFA 599

Query: 360 KMPFK 364
           KMP++
Sbjct: 600 KMPYR 604



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 188/442 (42%), Gaps = 93/442 (21%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+WNS++AGF+ Q G + +A E+F ++P+    S+N M++     S D+ +A   F R P
Sbjct: 110 VSWNSLIAGFS-QHGFMSNADEIFARMPRWSSSSWNSMITG-YAQSGDLASATAMFDRTP 167

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK------- 119
             +  SWN +I+G+   + + +A+ +F   P ++ +SW+AM++ Y + G LD        
Sbjct: 168 EHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDR 227

Query: 120 ------------------------AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
                                   AVE+F   P ++ V+++ MI  Y+  GK+  AE L 
Sbjct: 228 TPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLS 287

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
             MP ++   W +M++ Y  +   E+  ++         R +  S +++L   +    L 
Sbjct: 288 RRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRA---ARRDDEVSWNALLSAYAQAGHLH 344

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           L +      F+     D  A T LI++  + G LE+A  L+  I  +D+V W A+I  Y 
Sbjct: 345 LARS----TFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYG 400

Query: 276 QHGKGEKALRLF---------------------------DKMKDEGMKPDSITFVALLLA 308
            +GK  ++ R++                            KM D    PD  T  ++++A
Sbjct: 401 VNGKLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVA 460

Query: 309 CNHAGLVDLGIQYFDS-----------MVNDYGIAAKPDHYTCMVDLL------------ 345
               G +    + FDS           M+  Y  A   DH   M D +            
Sbjct: 461 YAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMV 520

Query: 346 ---GRAGKLVEAVDLIKKMPFK 364
               +AG L EA  +   +P K
Sbjct: 521 AAYAQAGNLDEAKSIFDSIPHK 542



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 160/391 (40%), Gaps = 50/391 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  + +   +  A+ +F  +PE N  S   ++  Y E G L  A  +F   P  +VV
Sbjct: 51  NLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVV 110

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W ++I+G+ + G +  A+++F  MP  +  +WN+MI GY ++      L     M    
Sbjct: 111 SWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSG----DLASATAMFDRT 166

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
              N  S ++++ G S    +   K     VF     +D  +   +++ Y + GDL+ A 
Sbjct: 167 PEHNVISWNALITGYSDNRMIPEAKG----VFDRAPGRDKISWNAMLTAYAQSGDLDSAK 222

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM------------------ 295
           ++F    ++D+V+   MI   A       A+ +F  M D                     
Sbjct: 223 EVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGE 282

Query: 296 ---------KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD---HYTCMVD 343
                    + D   + ++L A +  GLV+   + FD        AA+ D    +  ++ 
Sbjct: 283 AENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDR-------AARRDDEVSWNALLS 335

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
              +AG L  A    ++MP +     +  L++    + +L+ AE     L++L P     
Sbjct: 336 AYAQAGHLHLARSTFERMP-RHDVVAWTALIAVSGQNGQLEEAEV----LYDLIPERDLV 390

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            +  L   Y    K  +  R+   M E N V
Sbjct: 391 AWTALIQAYGVNGKLTESKRVYALMPERNRV 421


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/434 (44%), Positives = 275/434 (63%), Gaps = 1/434 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           M++G+ + G+V + +KLFDEMP +++++WN M+  YV N    + L+  + M   G+ P+
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++L ++L   + L  L+ G+ +H ++    L    +  T L+ MY KCG +E +  LF 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            + R+DV TWN MI G A HG G+ AL LF++  +EG+ P ++TFV +L AC+ AGLV  
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G  YF  M + YGI  + +HY CMVDLLGRAG + EA+ +I+ M   P P ++  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R+H   +L E     L  L+P    G YVQLA+IYA  +KW+DV R+R  M E N  K+ 
Sbjct: 241 RIHGLAELGEKIGNRLIELDP-TYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVA 299

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G+S IE    VH F +G R H + + I + L+ +E R+  AGYVP++   LH +GEE KE
Sbjct: 300 GWSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKE 359

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
             +  HSE+LAIAFGL+    G+ IR+ KNLRVC DCH  TK IS + +REIIVRD +RF
Sbjct: 360 NAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRF 419

Query: 558 HHFKDGTCSCGDYW 571
           HHFK+G CSC DYW
Sbjct: 420 HHFKEGKCSCLDYW 433



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 72/282 (25%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP- 128
           M++GF +   ++  + LF  MPE++ +SW+ M+  Y+  G+L +A+E FK      + P 
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 129 ----------------------VKSVV----------AWTAMISGYMKFGKVDLAEKLFD 156
                                 + S++            TA++  Y K G ++ +  LF+
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            MP +++ TWN MI G   +   +D L L    +  G+ P   +   VL  CS    ++ 
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+   Q++       D+  + P +  Y    DL     L  E                  
Sbjct: 181 GRHYFQMM------TDSYGIEPEMEHYGCMVDLLGRAGLVFE------------------ 216

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
                 A+++ + M    + PD + +  +L AC   GL +LG
Sbjct: 217 ------AIKVIESM---AISPDPVLWAMVLCACRIHGLAELG 249


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 343/612 (56%), Gaps = 48/612 (7%)

Query: 7   VNWNSVLAGFAKQ---RGKLKDAQELFDKIPQ-PDVVSY-NIMLSCILLNSDDV--VAAF 59
           + WNS+L  F      R  L+   E+ ++    PD  ++ +++  C LL    V  V   
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
              + +   D     T+++ +    ++  AR LF  M  +N V W++MISGY++    ++
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 120 AVELFK--------------------VAPVKSV-------------------VAWTAMIS 140
           A+ L+K                     A +K +                   V  +A+++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG-LGIRPNAS 199
            Y K G +  A ++FD++  K++  W+A+I GYV+N+ + + L+L R + G   +RPN  
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           ++ +V+  C+ L  L+ G+ VH  + ++      +    LI M+ KCGD++ A ++F  +
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSM 343

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             KD+++WN+M++G+A HG G +AL  F  M+   ++PD ITF+ +L AC+HAGLV  G 
Sbjct: 344 SYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           + F  +   YG+  K +HY CMVDLL RAG L EA + I+ MP +P  AI+G++L ACRV
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439
           +  L+L E AA  L  L P N  G Y+ L+NIYA  K W++V ++R  M E  + K PG 
Sbjct: 464 YNNLELGEEAARFLLKLEPTN-DGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGC 522

Query: 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 499
           S + +  + H F +GD  HPE+  I   L+++ +++KLAGYV D    L  + +  KE+ 
Sbjct: 523 SSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEES 582

Query: 500 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 559
           +  HSEKLA+ +GL+K  +G  I + KNLRVC DCH   K +S I +R+I +RD  RFHH
Sbjct: 583 VSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHH 642

Query: 560 FKDGTCSCGDYW 571
           FKDG+CSC DYW
Sbjct: 643 FKDGSCSCRDYW 654



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 186/383 (48%), Gaps = 37/383 (9%)

Query: 40  SYNIMLSCIL-LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE 98
           S N +++ +L + S  V  A+  F      D  +WN+M+  FV      +A   +  M E
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 99  K-----NSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAW---------TAMISGY 142
           +     +  ++ +++ G   C  L +    FKV  V    VV +         T +++ Y
Sbjct: 72  RSRNVPDRFTFPSLLKG---CALLLE----FKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
              G +  A  LF+ M  +N V W +MI+GY++N    + L L + M   G  P+  +++
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           +++  C+ L  L +G ++H  + +  +       + L++MY KCGDL+ A ++F ++  K
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDK 244

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           DV  W+A+I GY ++ +  +AL+LF ++     M+P+ +T +A++ AC   G ++ G   
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG--- 301

Query: 322 FDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
               V+DY    +  H       ++D+  + G +  A  +   M +K   + + ++++  
Sbjct: 302 --RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGF 358

Query: 378 RVH--KRLDLAEFAAMNLFNLNP 398
            +H   R  LA+F  M   +L P
Sbjct: 359 ALHGLGREALAQFRLMQTTDLQP 381


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/509 (42%), Positives = 295/509 (57%), Gaps = 12/509 (2%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVA 127
           N ++S + +   +++AR +   M  ++ VSW++++ GY +  + D A+E+       K++
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                +A             V   + +F +M  K+LV+WN MI  Y++N+   + ++L  
Sbjct: 239 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 298

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G  P+A S++SVL  C   S+L LGK++H  + +  L  +      LI MY KCG
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCG 358

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            LE A  +F  ++ +DVV+W AMIS Y   G+G  A+ LF K++D G+ PDSI FV  L 
Sbjct: 359 CLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLA 418

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL++ G   F  M + Y I  + +H  CMVDLLGRAGK+ EA   I+ M  +P  
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LL ACRVH   D+   AA  LF L P   +G YV L+NIYA   +W++V  IR  
Sbjct: 479 RVWGALLGACRVHSDTDIGLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNI 537

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MK   + K PG S +EV  ++H F  GDR HP+   I+ +L  L K+MK  GYVPD E A
Sbjct: 538 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESA 597

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVP-----LGTPIRVFKNLRVCGDCHRATKYIS 542
           LH V EE KE  L  HSEKLAI F L+            IR+ KNLR+CGDCH A K IS
Sbjct: 598 LHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLIS 657

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I  REII+RDT RFH F+ G CSCGDYW
Sbjct: 658 QITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y     V  A K+FDE+P +N++  N MI  YV N +  +G+K+   M G  +RP+
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS   ++ +G+++H    K  L         L+SMY KCG L +A  +  
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E+ R+DVV+WN+++ GYAQ+ + + AL +  +M+   +  D+ T  +LL A ++    + 
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN- 258

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLL 374
            + Y   M    G  +    +  M+ +  +    VEAV+L  +M    F+P      ++L
Sbjct: 259 -VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 375 SAC 377
            AC
Sbjct: 317 PAC 319



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 181/414 (43%), Gaps = 72/414 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
           M+ +  V+WNS++ G+A Q  +  DA E+  ++    +      ++ +L       +++V
Sbjct: 201 MSRRDVVSWNSLVVGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           +   D F ++  K   SWN MI  +++     +A +L+  M     E ++VS ++++   
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA- 318

Query: 112 IECG---------QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             CG         ++   +E  K+ P  +++   A+I  Y K G ++ A  +F+ M +++
Sbjct: 319 --CGDTSALSLGKKIHGYIERKKLIP--NLLLENALIDMYAKCGCLEKARDVFENMKSRD 374

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+W AMI+ Y  +    D + L   +   G+ P++ +  + L  CSH   L+ G+   +
Sbjct: 375 VVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+       D   +TP +           AC                M+    + GK ++
Sbjct: 435 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 464

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AKPDHYTCM 341
           A R    ++D  M+P+   + ALL AC      D+G+   D +   + +A  +  +Y  +
Sbjct: 465 AYRF---IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL---FQLAPEQSGYYVLL 518

Query: 342 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVHKRLD 384
            ++  +AG+  E     +++K    K  P         I  T L   R H + D
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSD 572



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           + VH  +    L  +++    L+  Y    D+  A K+F EI  ++V+  N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G   + +++F  M    ++PD  TF  +L AC+ +G + +G +   S     G+++    
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFV 177

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKM 361
              +V + G+ G L EA  ++ +M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 329/564 (58%), Gaps = 34/564 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WNS++ G     G  +DA  LF+++ +  VV    +L  IL     V +  D+     
Sbjct: 345 ISWNSLITGVV-HFGLGEDALILFNQMRRSSVVLDEFILPTIL----GVCSGPDY----- 394

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
               AS   ++ G+  K  M  +       P  N     A+I+ Y +CG  DKA  +F++
Sbjct: 395 ----ASTGELLHGYTIKSGMGSS------APVGN-----AIITMYAKCGDTDKADLVFRL 439

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P+++ ++WTAMI+ + + G +  A   FD MP +N+VTWN+M++ YV+N ++E+GLKL 
Sbjct: 440 MPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLY 499

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G++P+  + ++ +  C+ L+ ++LG QV     K  L  + +    +++MY +C
Sbjct: 500 VSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRC 559

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +++A   F  I  KD+++WNAM++ +AQ+G G K +  F+ M     KP+ I++V++L
Sbjct: 560 GLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVL 619

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             C+H GLV  G  YFDSM   +GI+   +H++CMVDLLGRAG L +A DLI+ MPFKP 
Sbjct: 620 SGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPN 679

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++  LL +CRVH  L LAE AA  L  L+   + G YV L+N+Y+   + D+VA +R 
Sbjct: 680 ATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEG-YVLLSNMYSESGELDNVADMRK 738

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            MK   +    G SWIEV   VH F   +  HP++  ++ KL+E+ K ++  G    +E 
Sbjct: 739 LMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVES 798

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
           ++H   +        +HSEKLA AFGL+ +P   PI V KNLRVC DCH   K +S +  
Sbjct: 799 SVHRSKK--------YHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTS 850

Query: 547 REIIVRDTTRFHHFKDGTCSCGDY 570
           RE+I+RD  RFHHFKDG CSC DY
Sbjct: 851 RELIMRDGYRFHHFKDGICSCKDY 874



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/458 (22%), Positives = 194/458 (42%), Gaps = 52/458 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMIS 78
           G   DA ++F +    ++ ++N M+   L++S  +  A   F  +P+  KD+ SW TMIS
Sbjct: 57  GLTHDAFQVFQETHHRNIFTWNTMIRA-LVSSSRMSDAEKLFDEMPVRVKDSVSWTTMIS 115

Query: 79  GFVQKKNMAKARDLFLAM---------------------------PEKNSVSWSAMISG- 110
           G+ Q    +++ + F  M                             + ++   A++S  
Sbjct: 116 GYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKL 175

Query: 111 ---------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
                          Y++CG +D A  +F      S+  W +MI GY +      A ++F
Sbjct: 176 GFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIF 235

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215
           + MP ++ V+WN +I+ + ++ +    L +   M   G  PN  +  SVL  C+  S L+
Sbjct: 236 NRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLK 295

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            G  +H  + +     D      LI MY KCG L+ A ++F  ++  D ++WN++I+G  
Sbjct: 296 WGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVV 355

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
             G GE AL LF++M+   +  D      +L  C+       G +         G+ +  
Sbjct: 356 HFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTG-ELLHGYTIKSGMGSSA 414

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
                ++ +  + G   +A  + + MP +   +    + +  R     D+ +  A   F+
Sbjct: 415 PVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSG---DIGK--ARGYFD 469

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           + P      +  + + Y      ++  ++ +SM+ N V
Sbjct: 470 MMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGV 507



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 167/384 (43%), Gaps = 42/384 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NSV+  + K  G +  A+ +F  I +P +  +N M+            A   F R+P +D
Sbjct: 185 NSVVGMYVKC-GDVDLAETVFFDIERPSLFCWNSMIYG-YSQMYGPYKALQIFNRMPERD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL-- 123
             SWNT+IS F Q     +   +F+ M  +    N +++ +++S       L     L  
Sbjct: 243 EVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHA 302

Query: 124 --FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
              ++     +V    +I  Y K G +DLA+++F  +   + ++WN++I G V     ED
Sbjct: 303 RILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGED 362

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L L   M    +  +   L ++L  CS       G+ +H    KS +         +I+
Sbjct: 363 ALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIIT 422

Query: 242 MYCKCGDLEDACKLFL-------------------------------EIQRKDVVTWNAM 270
           MY KCGD + A  +F                                 +  +++VTWN+M
Sbjct: 423 MYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSM 482

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           +S Y Q+G  E+ L+L+  M+  G++PD ITF   + AC    +V LG+Q   +    +G
Sbjct: 483 LSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVV-THATKFG 541

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEA 354
           ++        +V +  R G + EA
Sbjct: 542 LSLNVSVANSIVTMYSRCGLIKEA 565



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 37/236 (15%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNA 168
           Y  CG    A ++F+    +++  W  MI   +   ++  AEKLFDEMP   K+ V+W  
Sbjct: 53  YSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTT 112

Query: 169 MIAGYVENSWAEDGLKLLRMMI----GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           MI+GY +N +     +   +MI      G   +  S +SV+  C  L   +L  Q+H LV
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALV 172

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----------------------- 261
            K     +T     ++ MY KCGD++ A  +F +I+R                       
Sbjct: 173 SKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKAL 232

Query: 262 --------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
                   +D V+WN +IS ++QHG G + L +F +M ++G  P+ +T+ ++L AC
Sbjct: 233 QIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSAC 288



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           S  + +++H  +  S L      L  L+ MY  CG   DA ++F E   +++ TWN MI 
Sbjct: 23  SPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIR 82

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV---NDY 329
                 +   A +LFD+M       DS+++  ++   +  G      + F  M+   ND 
Sbjct: 83  ALVSSSRMSDAEKLFDEMPVR--VKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDG 140

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVD---LIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
           G    P  +T ++   G  G    A+    L+ K+ F  +  I  +++        +DLA
Sbjct: 141 GKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLA 200

Query: 387 E 387
           E
Sbjct: 201 E 201


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/539 (38%), Positives = 318/539 (58%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L     +  A   F+++    +  +NTMI G V   N+ +A  L++ M E+  
Sbjct: 67  NLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGI 126

Query: 100 --NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             ++ ++  ++      G L + V++    FK      V     +I+ Y K G ++ A  
Sbjct: 127 EPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASV 186

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS 212
           +F++M  K++ +W+++I  +       + L LL  M G G  R   S L S L  C+HL 
Sbjct: 187 VFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLG 246

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           S   G+ +H ++ ++    +    T LI MY K G LE    +F  + +K+  ++  +I+
Sbjct: 247 SPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIIT 306

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG+G +AL +F  M +EG+ PD + +V +L AC+HAGLV+ G+Q F+ +  ++ I 
Sbjct: 307 GLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIK 366

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY CMVDL+GRAG L  A DLIK MP KP   ++ +LLSAC+VH  L++ E AA N
Sbjct: 367 PTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAEN 426

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           +F LN  N  G Y+ LAN+YA  KKW DVARIR  M E ++V+ PG+S +E    V++F 
Sbjct: 427 IFKLNQHNP-GDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFV 485

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D+  P+  +I++ ++++E ++K  GY PD+   L  V E+ K Q L  HS+KLAIAF 
Sbjct: 486 SQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFA 545

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI+   G+ IR+ +N+R+C DCH  TK+IS I +REI VRD  RFHHFKDGTCSC DYW
Sbjct: 546 LIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 322/567 (56%), Gaps = 34/567 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +++ I  P V + N M+ C +               LP    + ++ M   FV   N
Sbjct: 85  ALSIYNSISHPTVFATNNMIRCFVKGD------------LPRHSISLYSHMCRSFVAAPN 132

Query: 86  ------MAKARDLFLAMPE--------------KNSVSWSAMISGYIECGQLDKAVELFK 125
                 + +A     A+ E              K+    +A+I  Y  C +++ A ++F 
Sbjct: 133 KHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFD 192

Query: 126 VAPV-KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
             P  + VV+W +MI G+++ G++ +A+KLF EMP K++++W  +I+G V+N   E  L 
Sbjct: 193 EVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALD 252

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
             + +    +RPN + L S+L   + L +L+ GK++H +          +  T L+ MY 
Sbjct: 253 YFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYA 312

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           KCG ++++  LF  +  KD  +WN MI G A HG G++AL LF+K   +G  P ++TF+ 
Sbjct: 313 KCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIG 372

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+ AGLV  G  +F  M + YGI  + +HY CMVDLL RAG + +AV++I +MP  
Sbjct: 373 VLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAP 432

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P P ++ ++L +C+VH  ++L E     L  ++P +  G YVQLA I+A ++KW+DV+++
Sbjct: 433 PDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHN-GHYVQLARIFARLRKWEDVSKV 491

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
           R  M E N  K+ G+S IE    VH F +GD+ H     I++ L+ +  R+  AGY  ++
Sbjct: 492 RRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANV 551

Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
              LH + EE KE  +  HSE+LAIAFGL+    G  IR+ KNLRVCGDCH  +K IS +
Sbjct: 552 SSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLV 611

Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +REIIVRD +RFHHFK G CSC DYW
Sbjct: 612 FEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 34/249 (13%)

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLG 207
           D A  +++ +    +   N MI  +V+       + L   M       PN  +L+ VL  
Sbjct: 83  DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED---------------- 251
           CS+  +++ G QV   V K    KD      LI +YC C  +E                 
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVS 202

Query: 252 ----------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
                           A KLF+E+  KDV++W  +ISG  Q+G+ EKAL  F ++ ++ +
Sbjct: 203 WNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKL 262

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           +P+    V+LL A    G ++ G +   S+ N           T +VD+  + G + E+ 
Sbjct: 263 RPNEAILVSLLAAAAQLGTLEYG-KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESR 321

Query: 356 DLIKKMPFK 364
            L  +MP K
Sbjct: 322 FLFDRMPEK 330


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 340/636 (53%), Gaps = 81/636 (12%)

Query: 1   MNVKTTVNWNSVLAGFA---------------KQRGKLK-DAQELFDKIP---------Q 35
           M ++  V WN++LAG+A               +  G L+ +A  L   +P         Q
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
              +    + +C+  N + V+                   ++  + + K +  A  +F  
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIG---------------TALLDMYAKCKQLVYACRVFHG 265

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----------------------- 132
           MP +N V+WSA+I G++ C ++ +A  LFK   V+ +                       
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 133 -----------------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                             A  +++S Y K G ++ A   FDE+  K+ +++ A+++G V+
Sbjct: 326 GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQ 385

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           N  AE+   + + M    + P+ +++ S++  CSHL++LQ GK  H  V    L  +T+ 
Sbjct: 386 NGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              LI MY KCG ++ + ++F ++  +DVV+WN MI+GY  HG G++A  LF  MK++G 
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGF 505

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            PD +TF+ L+ AC+H+GLV  G  +FD+M + YGI  + +HY CMVDLL R G L EA 
Sbjct: 506 APDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAY 565

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
             I+ MP K    ++G LL ACR+HK +DL +  +  +  L P    G +V L+NI++A 
Sbjct: 566 QFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP-EGTGNFVLLSNIFSAA 624

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            ++D+ A +R+  K     K PGYSWIE+   +H F  GD+ HP    I+ +L  +   +
Sbjct: 625 GRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDI 684

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           K  GY  D  F L  + EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH
Sbjct: 685 KKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCH 744

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            A KY++ +  R IIVRDT RFHHFK+G CSCG++W
Sbjct: 745 TAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 175/403 (43%), Gaps = 67/403 (16%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           RG+L  A+++FD+IP PD  +YN ++           AA D ++ + ++   + N     
Sbjct: 47  RGQLALARQVFDRIPAPDARAYNALIRAYSW-LGPFHAAIDLYRSM-LRFRVAPNKYTFP 104

Query: 80  FVQKK-----NMAKAR-------------DLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           FV K      ++   R             DLF++         +A+I  YI C +   A 
Sbjct: 105 FVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVS---------TALIDLYIRCARFGPAR 155

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            +F   P++ VVAW AM++GY   G                   ++  IA          
Sbjct: 156 NVFAKMPMRDVVAWNAMLAGYANHG------------------MYHHAIA---------- 187

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TP 238
              LL M    G+RPNAS+L S+L   +   +L  G  +H    ++ L ++   +   T 
Sbjct: 188 --HLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTA 245

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY KC  L  AC++F  +  ++ VTW+A+I G+    +  +A  LF  M  EG+   
Sbjct: 246 LLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFL 305

Query: 299 SITFVA-LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           S T VA  L  C     + +G Q   +++   GI A       ++ +  +AG + EA   
Sbjct: 306 SATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMF 364

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLA--EFAAMNLFNLNP 398
             ++  K   + +G LLS C  + + + A   F  M   N+ P
Sbjct: 365 FDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA---EDGLKL 185
           VK    W   +  ++  G++ LA ++FD +P  +   +NA+I  Y   SW       + L
Sbjct: 31  VKDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAY---SWLGPFHAAIDL 87

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
            R M+   + PN  +   VL  CS L  L+ G+ +H     + L  D    T LI +Y +
Sbjct: 88  YRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIR 147

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFVA 304
           C     A  +F ++  +DVV WNAM++GYA HG    A+  L D     G++P++ T V+
Sbjct: 148 CARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVS 207

Query: 305 LL-LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-------TCMVDLLGRAGKLVEAVD 356
           LL L   H  L      +  + ++ Y + A  +         T ++D+  +  +LV A  
Sbjct: 208 LLPLLAQHGAL------FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACR 261

Query: 357 LIKKMPFK 364
           +   MP +
Sbjct: 262 VFHGMPVR 269


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/542 (38%), Positives = 304/542 (56%), Gaps = 40/542 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D A+  +++S +     +  A  +F  +PE++ V+W+A+ SGY   G+  +A++LFK   
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMV 204

Query: 126 ---VAP---------------------------------VKSVVAWTAMISGYMKFGKVD 149
              V P                                  K+    T +++ Y K GK++
Sbjct: 205 EMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A  +FD M  K++VTW+ MI GY  NS+ ++G++    M+   ++P+  S+   L  C+
Sbjct: 265 KARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L +L LG+    L+ +     +      LI MY KCG +    ++F E++ KD+V  NA
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
            ISG A++G  + +  +F + +  G+ PD  TF+ LL  C HAGL+  G+++F+++   Y
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
            +    +HY CMVDL GRAG L +A  LI  MP +P   ++G LLS CR+ K   LAE  
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETV 504

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
              L  L P N AG YVQL+NIY+   +WD+ A +R  M    + K+PGYSWIE+   VH
Sbjct: 505 LKELIALEPWN-AGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVH 563

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           EF + D+ HP    I+ KL++L   M+L G+VP  EF    V +E KE++L  HSEKLA+
Sbjct: 564 EFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAV 623

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFGLI    G  IRV KNLRVCGDCH   K IS I +REI+VRD  RFH F +G+CSC D
Sbjct: 624 AFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCND 683

Query: 570 YW 571
           YW
Sbjct: 684 YW 685



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 172/353 (48%), Gaps = 16/353 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           +F  F      +   +NT+I+GFV      +  DLFL++ +     +  ++  ++     
Sbjct: 64  SFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTR 123

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                  ++L     K      V A T+++S Y   G+++ A K+F+E+P +++VTW A+
Sbjct: 124 ASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTAL 183

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
            +GY       + + L + M+ +G+RP++  +  VL  C H+  L  G+ + + + +  +
Sbjct: 184 FSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEM 243

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            K++   T L+++Y KCG +E A  +F  +  KD+VTW+ MI GYA +   ++ +  F +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQ 303

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M  E +KPD  + V  L +C   G +DLG ++  S+++ +           ++D+  + G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCG 362

Query: 350 KLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            +    ++ K+M  K       AI G    A   H +L  A F       ++P
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGL---AKNGHVKLSFAVFGQTEKLGISP 412


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 334/616 (54%), Gaps = 48/616 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-QPDVVSYNIMLSCI----LLNSDDV 55
           M+ ++  +WN+++A +A Q G  ++A  L++ +  +P V ++  +LS      LL+    
Sbjct: 183 MSGRSVSSWNAMIAAYA-QSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRK 241

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           + A     R    D +  N +++ + + K +  A  +F  +P ++ VSWSAMI+ + E  
Sbjct: 242 IHAL-ISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETD 300

Query: 116 QLDKAVELFKVAPVKSV---------------------------------------VAWT 136
             D+A+E +    ++ V                                       V  T
Sbjct: 301 LFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGT 360

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A++  Y  +G +D A  LFD++  ++   W  +I GY +       L+L R M      P
Sbjct: 361 ALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVP 420

Query: 197 NASSL-SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
               + S V+  C+ L +    +Q H  +    +  D    T L++MY + G+LE A ++
Sbjct: 421 ATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQV 480

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++  +D + W  +I+GYA+HG+   AL L+ +M+ EG +P  +TF+ +L AC+HAGL 
Sbjct: 481 FDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQ 540

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G Q F S+ +DY +     HY+C++DLL RAG+L +A +LI  MP +P    + +LL 
Sbjct: 541 EQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLG 600

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           A R+HK +  A  AA  +  L+P + A  YV L+N++A       +A +R +M    V K
Sbjct: 601 ASRIHKDVKRATHAAGQITKLDPVDPAS-YVLLSNVHAVTGNLAGMASVRNTMVARGVKK 659

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
             G SWIEV   +HEF  GD  HP    I  +L+ L  ++K AGYVP+ E  LH VGE+ 
Sbjct: 660 RRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKE 719

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE LL  HSEKLAIAFGLI    GT +R+F  LR+C DCH A K+ISAI +REIIVRD++
Sbjct: 720 KELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSS 779

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH F+DG CSCGDYW
Sbjct: 780 RFHKFRDGQCSCGDYW 795



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 188/360 (52%), Gaps = 18/360 (5%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKDTASW 73
           +Q   L+  +++ D+I      S N+ L   ++ +      V +A   F  +  K+  SW
Sbjct: 35  RQCQDLESVRQIHDRIS--GAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSW 92

Query: 74  NTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKS 131
            +M++ + Q  +   A DL+  M  + N V ++ ++        L++   +  +++  K 
Sbjct: 93  GSMLTAYAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKG 152

Query: 132 ----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
               V+   ++++ Y K G ++ A++LF+ M  +++ +WNAMIA Y ++   E+ ++L  
Sbjct: 153 LKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYE 212

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    + P+  + +SVL  CS+L  L  G+++H L+       D +    L++MY +C 
Sbjct: 213 DM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCK 269

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L+DA K+F  + R+DVV+W+AMI+ +A+    ++A+  + KM+ EG++P+  TF ++LL
Sbjct: 270 CLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLL 329

Query: 308 ACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
           AC   G +  G    D ++ N Y I     + T +VDL    G L EA  L  ++  + +
Sbjct: 330 ACASVGDLRAGRAVHDQILGNGYKITLV--NGTALVDLYTSYGSLDEARSLFDQIENRDE 387


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/514 (39%), Positives = 303/514 (58%), Gaps = 16/514 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-------KNSVSWSAMISGYIEC 114
           F  +P KD  +W  +I+GF Q     + RD  L  P+        N  + S+++      
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNN---RPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSE 202

Query: 115 GQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
             LD   +L     K     SV   +A++  Y + G +D A+  FD MPTK+ V+WNA+I
Sbjct: 203 HGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALI 262

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           +G+      E  L LL  M     +P   + SSVL  C+ + +L+ GK VH  + KS L 
Sbjct: 263 SGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLK 322

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                   L+ MY K G ++DA ++F  + + DVV+WN M++G AQHG G++ L  F++M
Sbjct: 323 LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
              G++P+ I+F+ +L AC+H+GL+D G+ YF+ ++  Y +     HY   VDLLGR G 
Sbjct: 383 LRIGIEPNEISFLCVLTACSHSGLLDEGLYYFE-LMKKYKVEPDVPHYVTFVDLLGRVGL 441

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           L  A   I++MP +P  A++G LL ACR+HK ++L  +AA   F L+P ++ G  + L+N
Sbjct: 442 LDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDS-GPRMLLSN 500

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           IYA+  +W DVA++R  MKE+ V K P  SW+E+   VH F + D  HP +  I  K +E
Sbjct: 501 IYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEE 560

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           +  ++K  GYVPD    L  V ++ +E+ L +HSEKLA+AF L+  P G+PIR+ KN+RV
Sbjct: 561 ISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRV 620

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           CGDCH A K++S +  REIIVRDT RFH F+DG+
Sbjct: 621 CGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 132/329 (40%), Gaps = 50/329 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNS 52
           M  K  V W +++AGF+ Q  + +DA  LF ++ +      +  LS +L        L+ 
Sbjct: 149 MPTKDMVTWTALIAGFS-QNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP 207

Query: 53  DDVVAAF-----------------DFFQR-------------LPIKDTASWNTMISGFVQ 82
              + AF                 D + R             +P K   SWN +ISG  +
Sbjct: 208 GTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 83  KKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           K     A  L   M  KN      ++S+++S     G L++  +      +KS +   A 
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG-KWVHAHMIKSGLKLIAF 326

Query: 139 ISG-----YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           I       Y K G +D A+++FD +   ++V+WN M+ G  ++   ++ L     M+ +G
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I PN  S   VL  CSH   L  G    +L+ K  +  D       + +  + G L+ A 
Sbjct: 387 IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 254 KLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
           +   E+        W A++     H   E
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMHKNME 475


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/637 (35%), Positives = 347/637 (54%), Gaps = 76/637 (11%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQE-LFDKIP---QPDVVSYNIML-SCILLNSDDVVAAFD 60
            V WN++++    Q G+  +A E L+D +    +PD V++   L +C  L   +++A   
Sbjct: 247 VVTWNTMIS-LLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRL---EMLALGR 302

Query: 61  FFQRLPIKDT-ASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSV--SWSAMISGYI 112
               + +KD   + N+ ++      +   + +A AR +F  +PE +     W+AMI GY 
Sbjct: 303 EMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYA 362

Query: 113 ECGQLDKAVELFK-------VAPVKSVVA------------------------------- 134
           + G  ++A+ELF         AP ++ ++                               
Sbjct: 363 QAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNR 422

Query: 135 --WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI-- 190
               A++  Y + G++D+A ++F  +  +++V+WN +I G V    A +  +L+  M   
Sbjct: 423 FVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLP 482

Query: 191 ------------GLGIR--PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
                       G   R  PN  +L ++L GC+ L++   GK++H    +  L  D    
Sbjct: 483 SPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVG 542

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-M 295
           + L+ MY KCG L  +  +F  + R++V+TWN +I  Y  HG G++A+ LFD+M   G  
Sbjct: 543 SALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEA 602

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            P+ +TF+A L AC+H+GLVD G++ F  M  D+G+   PD + C+VD+LGRAG+L EA 
Sbjct: 603 TPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAY 662

Query: 356 DLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
            +I  M P + Q + + +LL ACR+H+ ++L E AA  LF L P  A+  YV L NIY+A
Sbjct: 663 SIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASH-YVLLCNIYSA 721

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
              WD    +R+ M+   V K PG SWIE+   +H F +G+  HP    +H  +  L +R
Sbjct: 722 AGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWER 781

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           M+  GY PD    LH V E+ K  +L +HSEKLAIAFGL++ P G  IRV KNLRVC DC
Sbjct: 782 MRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDC 841

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H A K++S +  R+I++RD  RFHHF+DG+CSCGDYW
Sbjct: 842 HEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 31/325 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELF 124
           D  +WNTMIS  VQ    A+A ++   M       + V++++ +        L    E+ 
Sbjct: 246 DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMH 305

Query: 125 KVA------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEM--PTKNLVTWNAMIAGYVEN 176
            V          S VA +A++  Y    KV  A ++FD +  P++ L  WNAMI GY + 
Sbjct: 306 AVVLKDADLAANSFVA-SALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQA 364

Query: 177 SWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
              E+ L+L  RM    G  P+ +++S VL  C+        + +H  V K  +  +   
Sbjct: 365 GMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFV 424

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK---- 291
              L+ MY + G+++ A ++F  I  +DVV+WN +I+G    G   +A +L  +M+    
Sbjct: 425 QNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSP 484

Query: 292 --------DEGMK----PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
                   +EG      P++IT + LL  C        G +     V  + + +     +
Sbjct: 485 SPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVR-HALESDIAVGS 543

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFK 364
            +VD+  + G L  +  +  ++P +
Sbjct: 544 ALVDMYAKCGCLAASRAVFDRLPRR 568



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 15/216 (6%)

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS--LSSVLLGCSHL---SSLQ 215
           ++ V++N++I+        E  L  LR M+  G R + SS  L SVLL CSHL      +
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEG-RHDVSSFTLVSVLLACSHLPGDDGRR 189

Query: 216 LGKQVHQLVFKSPLCKDTTALTP---LISMYCKCGDLEDACKLFLEIQRK------DVVT 266
           LG++ H    K     +     P   L+SMY + G ++DA  LF            DVVT
Sbjct: 190 LGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVT 249

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WN MIS   Q G+  +A+ +   M   G++PD +TF + L AC+   ++ LG +    ++
Sbjct: 250 WNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            D  +AA     + +VD+     K+  A  +   +P
Sbjct: 310 KDADLAANSFVASALVDMYAGNEKVASARRVFDMVP 345


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 340/636 (53%), Gaps = 81/636 (12%)

Query: 1   MNVKTTVNWNSVLAGFA---------------KQRGKLK-DAQELFDKIP---------Q 35
           M ++  V WN++LAG+A               +  G L+ +A  L   +P         Q
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
              +    + +C+  N + V+                   ++  + + K +  A  +F  
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIG---------------TALLDMYAKCKQLVYACRVFHG 265

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----------------------- 132
           MP +N V+WSA+I G++ C ++ +A  LFK   V+ +                       
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 133 -----------------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
                             A  +++S Y K G ++ A   FDE+  K+ +++ A+++G V+
Sbjct: 326 GTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQ 385

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           N  AE+   + + M    + P+ +++ S++  CSHL++LQ GK  H  V    L  +T+ 
Sbjct: 386 NGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
              LI MY KCG ++ + ++F ++  +DVV+WN MI+GY  HG G++A  LF  MK++G 
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGF 505

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            PD +TF+ L+ AC+H+GLV  G  +FD+M + YGI  + +HY CMVDLL R G L EA 
Sbjct: 506 APDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAY 565

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
             I+ MP K    ++G LL ACR+HK +DL +  +  +  L P    G +V L+NI++A 
Sbjct: 566 QFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP-EGTGNFVLLSNIFSAA 624

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            ++D+ A +R+  K     K PGYSWIE+   +H F  GD+ HP    I+ +L  +   +
Sbjct: 625 GRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDI 684

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           K  GY  D  F L  + EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH
Sbjct: 685 KKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCH 744

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            A KY++ +  R IIVRDT RFHHFK+G CSCG++W
Sbjct: 745 TAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 179/420 (42%), Gaps = 68/420 (16%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK    W   L      RG+L  A+++FD+IP PD  +YN ++           AA D +
Sbjct: 31  VKDKKQWQQELEQHI-SRGQLALARQVFDRIPAPDARAYNALIRAYSW-LGPFHAAIDLY 88

Query: 63  QRLPIKDTASWNTMISGFVQKK-----NMAKAR-------------DLFLAMPEKNSVSW 104
           + + ++   + N     FV K      ++   R             DLF++         
Sbjct: 89  RSM-LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVS--------- 138

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A+I  YI C +   A  +F   P++ VVAW AM++GY   G                  
Sbjct: 139 TALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHG------------------ 180

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            ++  IA             LL M    G+RPNAS+L S+L   +   +L  G  +H   
Sbjct: 181 MYHHAIA------------HLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYC 228

Query: 225 FKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
            ++ L ++   +   T L+ MY KC  L  AC++F  +  ++ VTW+A+I G+    +  
Sbjct: 229 LRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMT 288

Query: 282 KALRLFDKMKDEGMKPDSITFVA-LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           +A  LF  M  EG+   S T VA  L  C     + +G Q   +++   GI A       
Sbjct: 289 EAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNS 347

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA--EFAAMNLFNLNP 398
           ++ +  +AG + EA     ++  K   + +G LLS C  + + + A   F  M   N+ P
Sbjct: 348 LLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/527 (43%), Positives = 311/527 (59%), Gaps = 17/527 (3%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDK 119
           F+    ++D  SWN+MI  + Q K  AKA  L+  M  K   +    + S       LD 
Sbjct: 196 FYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDH 255

Query: 120 AV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDL---AEKLFDEMPTKNLVTWNAM 169
            +       +L K    ++    + +I  Y K G  D    +EK+F E+ + +LV WN M
Sbjct: 256 LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTM 315

Query: 170 IAGYVENS-WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I+GY  N   +E+ +K  R M  +G RP+  S   V   CS+LSS   GKQ+H L  KS 
Sbjct: 316 ISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSN 375

Query: 229 LCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
           +  +  ++   LIS+Y K G+L DA ++F  +   + V++N MI GYAQHG G +ALRL+
Sbjct: 376 IPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLY 435

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M D G+ P++ITFVA+L AC H G VD G +YF++M   + I  + +HY+CM+DLLGR
Sbjct: 436 QRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGR 495

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AGKL EA   I  MP+KP    +  LL ACR HK + LAE AA  L  + P  AA  YV 
Sbjct: 496 AGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPL-AATPYVM 554

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           LAN+YA   KW+++A +R SM+   + K PG SWIEV    H F + D  HP +  ++E 
Sbjct: 555 LANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEY 614

Query: 468 LKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           L+E+ K+MK  GYV D ++A+      GE  +E  L  HSEKLA+AFGL+    G  I V
Sbjct: 615 LEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVV 674

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+CGDCH A K++SA+  REIIVRD  RFH FKDG CSCGDYW
Sbjct: 675 VKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 171/353 (48%), Gaps = 12/353 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+  FD   +P+V SYN+++     +S  +  A   F   P  DT S+NT+ISG+
Sbjct: 57  GCLSYARAAFDSTEEPNVFSYNVIVKAYAKDS-KIHIARQLFDENPQPDTVSYNTLISGY 115

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE--CGQLDKAVELFKVAPVKSVVAWT-- 136
              +    A  LF  M E         +SG I   C ++D   +L   A      +++  
Sbjct: 116 ADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSV 175

Query: 137 --AMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             A ++ Y K G +  A  +F  M   ++ V+WN+MI  Y ++      L L + MI  G
Sbjct: 176 NNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKG 235

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLE 250
            + +  +L+SVL   + L  L  G+Q H  + K+   +++   + LI  Y KCG    + 
Sbjct: 236 FKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMS 295

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           D+ K+F EI   D+V WN MISGY+ + +  E+A++ F +M+  G +PD  +FV +  AC
Sbjct: 296 DSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSAC 355

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           ++      G Q     +     + +      ++ L  ++G L++A  +  +MP
Sbjct: 356 SNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 13/230 (5%)

Query: 90  RDLFL-----AMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           RDLF      A+  K+ V+ S  +S      Y +CG L  A   F      +V ++  ++
Sbjct: 22  RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIV 81

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K  K+ +A +LFDE P  + V++N +I+GY +       + L + M  LG   +  
Sbjct: 82  KAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGF 141

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +LS ++  C     + L KQ+H           ++     ++ Y K G L +A  +F  +
Sbjct: 142 TLSGLIAAC--CDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 260 QR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
              +D V+WN+MI  Y QH +G KAL L+ +M  +G K D  T  ++L A
Sbjct: 200 DGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 49/205 (23%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++ N+ L     + G L DA+ +FD++P+ + VS+                         
Sbjct: 381 ISVNNALISLYYKSGNLLDARRVFDRMPELNAVSF------------------------- 415

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV- 121
                  N MI G+ Q  +  +A  L+  M +     N++++ A++S    CG++D+   
Sbjct: 416 -------NCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQK 468

Query: 122 ------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG-- 172
                 E FK+ P      ++ MI    + GK++ AE+  D MP K   V W A++    
Sbjct: 469 YFNTMKETFKIEP--EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACR 526

Query: 173 -YVENSWAEDGLKLLRMMIGLGIRP 196
            +   + AE   K L +M  L   P
Sbjct: 527 KHKNMALAERAAKELMVMQPLAATP 551



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 42/217 (19%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG------------ 247
           S   +LL       L  GK +H L  KS +   T      +++Y KCG            
Sbjct: 10  SFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST 69

Query: 248 -------------------DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
                               +  A +LF E  + D V++N +ISGYA   +   A+ LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDL 344
           +M++ G + D  T   L+ AC     VDL  Q     ++ + ++   D Y+ +    V  
Sbjct: 130 RMRELGFEVDGFTLSGLIAAC--CDRVDLIKQ-----LHCFAVSGGFDSYSSVNNAFVTY 182

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
             + G L EAV +   M        + +++ A   HK
Sbjct: 183 YSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHK 219


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 306/542 (56%), Gaps = 40/542 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           D A+  +++S +     +  A  LF  +P+++ V+W+A+ SGY   G+  +A++LFK   
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 126 ---VAP---------------------------------VKSVVAWTAMISGYMKFGKVD 149
              V P                                  K+    T +++ Y K GK++
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A  +FD M  K++VTW+ MI GY  NS+ ++G++L   M+   ++P+  S+   L  C+
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L +L LG+    L+ +     +      LI MY KCG +    ++F E++ KD+V  NA
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
            ISG A++G  + +  +F + +  G+ PD  TF+ LL  C HAGL+  G+++F+++   Y
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
            +    +HY CMVDL GRAG L +A  LI  MP +P   ++G LLS CR+ K   LAE  
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETV 504

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
              L  L P N AG YVQL+NIY+   +WD+ A +R  M +  + K+PGYSWIE+   VH
Sbjct: 505 LKELIALEPWN-AGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVH 563

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           EF + D+ HP    I+ KL++L   M+L G+VP  EF    V EE KE++L +HSEKLA+
Sbjct: 564 EFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAV 623

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           A GLI    G  IRV KNLRVCGDCH   K IS I +REI+VRD  RFH F +G+CSC D
Sbjct: 624 ALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCND 683

Query: 570 YW 571
           YW
Sbjct: 684 YW 685



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 16/353 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           ++  F      +   +N++I+GFV      +  DLFL++ +     +  ++  ++     
Sbjct: 64  SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                  ++L     K      V A T+++S Y   G+++ A KLFDE+P +++VTW A+
Sbjct: 124 ASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTAL 183

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
            +GY  +    + + L + M+ +G++P++  +  VL  C H+  L  G+ + + + +  +
Sbjct: 184 FSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEM 243

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            K++   T L+++Y KCG +E A  +F  +  KD+VTW+ MI GYA +   ++ + LF +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M  E +KPD  + V  L +C   G +DLG ++  S+++ +           ++D+  + G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCG 362

Query: 350 KLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
            +    ++ K+M  K       AI G    A   H +L  A F       ++P
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGL---AKNGHVKLSFAVFGQTEKLGISP 412


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 322/553 (58%), Gaps = 9/553 (1%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
           A+ LFD+    ++   N M S  +    + + +  F+      ++ D  S  + IS   Q
Sbjct: 290 AKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349

Query: 83  KKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            +N+   +     +      SW    +A+I  Y++C + D A  +F     K+VV W ++
Sbjct: 350 LRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSI 409

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPN 197
           ++GY++ G+VD A + F+ MP KN+V+WN +I+G V+ S  E+ +++   M    G+  +
Sbjct: 410 VAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNAD 469

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             ++ S+   C HL +L L K ++  + K+ +  D    T L+ M+ +CGD E A  +F 
Sbjct: 470 GVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFN 529

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +DV  W A I   A  G  E+A+ LFD M ++G+KPD + FV  L AC+H GLV  
Sbjct: 530 SLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQ 589

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G + F SM+  +G++ +  HY CMVDLLGRAG L EAV LI+ MP +P   I+ +LL+AC
Sbjct: 590 GKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAAC 649

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           RV   +++A +AA  +  L P    G YV L+N+YA+  +W+D+A++RLSMKE  + K P
Sbjct: 650 RVQGNVEMAAYAAEKIQVLAPERT-GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPP 708

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S I++    HEF SGD  HPE+ +I   L E+ +R    G+VPDL   L  V E+ K 
Sbjct: 709 GTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKI 768

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
            +L  HSEKLA+A+GLI    GT IR+ KNLRVC DCH   K+ S +  REII+RD  RF
Sbjct: 769 FMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRF 828

Query: 558 HHFKDGTCSCGDY 570
           H+ + G CSCGD+
Sbjct: 829 HYIRQGKCSCGDF 841



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 46/348 (13%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGY 111
           +A   F  +  ++  SW +MI G+ ++     A DLF  M        NSV+   +IS  
Sbjct: 187 SARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISAC 246

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISG----YMKFGKVDLAEKLFDEMPTKNLVTWN 167
            +   L+   +++       +     M+S     YMK   +D+A++LFDE    NL   N
Sbjct: 247 AKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AM + YV      + L +  +M+  G+RP+  S+ S +  CS L ++  GK  H  V ++
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
                      LI MY KC   + A ++F  +  K VVTWN++++GY ++G+ + A   F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426

Query: 288 DKMKD--------------------------------EGMKPDSITFVALLLACNHAGLV 315
           + M +                                EG+  D +T +++  AC H G +
Sbjct: 427 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486

Query: 316 DLG--IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           DL   I Y+   +   GI       T +VD+  R G    A+ +   +
Sbjct: 487 DLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 140/275 (50%), Gaps = 20/275 (7%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW--SAMISGYIECGQLDKAVELF 124
           +N++I G+       +A  LFL M      P+K +  +  SA      +   +     + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K+   K +    +++  Y + G++D A K+FDEM  +N+V+W +MI GY    +A+D + 
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 185 L-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           L  RM+    + PN+ ++  V+  C+ L  L+ G++V+  +  S +  +   ++ L+ MY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KC  ++ A +LF E    ++   NAM S Y + G   +AL +F+ M D G++PD I+ +
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 304 ALLLACN-----------HAGLVDLGIQYFDSMVN 327
           + + +C+           H  ++  G + +D++ N
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           +N++I GY  +    + + L   M+  GI P+  +    L  C+   +   G Q+H L+ 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K    KD      L+  Y +CG+L+ A K+F E+  ++VV+W +MI GYA+    + A+ 
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 286 LFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           LF +M +DE + P+S+T V ++ AC     ++ G + + + + + GI       + +VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDM 280

Query: 345 LGRAGKLVEAVDLIKKM 361
             +      A+D+ K++
Sbjct: 281 YMKC----NAIDVAKRL 293



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 46/303 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ KT V WNS++AG+  + G++  A E F+ +P+ ++V                     
Sbjct: 398 MSNKTVVTWNSIVAGYV-ENGEVDAAWETFETMPEKNIV--------------------- 435

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA--MISGYIECGQ-- 116
                      SWNT+ISG VQ     +A ++F +M  +  V+     M+S    CG   
Sbjct: 436 -----------SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 117 -LDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            LD A  ++    K      V   T ++  + + G  + A  +F+ +  +++  W A I 
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLC 230
                  AE  ++L   MI  G++P+  +    L  CSH   +Q GK++   + K   + 
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604

Query: 231 KDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
            +      ++ +  + G LE+A +L   + ++  DV+ WN++++     G  E A    +
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAE 663

Query: 289 KMK 291
           K++
Sbjct: 664 KIQ 666


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/428 (46%), Positives = 272/428 (63%), Gaps = 2/428 (0%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           FGK D A  LF EMP +++V+WN+M+A Y +     + L L   M  +G++P  +++ S+
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C+HL +L  G  +H  +  + +  ++   T L+ MY KCG +  A ++F  ++ KDV
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 280

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           + WN +I+G A HG  ++A RLF +MK+ G++P+ ITFVA+L AC+HAG+VD G +  D 
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
           M + YGI  K +HY C++DLL RAG L EA++LI  MP +P P   G LL  CR+H   +
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE 400

Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
           L E     L NL P + +G Y+ L+NIYAA KKWDD  ++R  MK N + K+PG S IE+
Sbjct: 401 LGEMVGKRLINLQPCH-SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 459

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFH 503
             +VH F +GD  HPE   I+EKL E+  R+K A G+  D    L  + EE KE  L  H
Sbjct: 460 KGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVH 519

Query: 504 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 563
           SEKLAIA+GL+ +     IR+ KNLRVC DCH  TK IS +  REIIVRD  RFHHF+DG
Sbjct: 520 SEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 579

Query: 564 TCSCGDYW 571
            CSC D+W
Sbjct: 580 ECSCLDFW 587



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGY 111
           AF  F  +P +D  SWN+M++ + Q     +A  LF  M      P + +V   +++S  
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV--SLLSAC 224

Query: 112 IECGQLDKAVELFKVA-----PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
              G LDK + L          V S+V  TA++  Y K GK+ LA ++F+ M +K+++ W
Sbjct: 225 AHLGALDKGLHLHTYINDNRIEVNSIVG-TALVDMYAKCGKISLATQVFNAMESKDVLAW 283

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N +IAG   +   ++  +L + M   G+ PN  +  ++L  CSH   +  G+++   +  
Sbjct: 284 NTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSS 343

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S        + P +  Y                          +I   A+ G  E+A+ L
Sbjct: 344 S------YGIEPKVEHY------------------------GCVIDLLARAGLLEEAMEL 373

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
              M    M+P+     ALL  C   G  +LG      ++N
Sbjct: 374 IGTMP---MEPNPCALGALLGGCRIHGNFELGEMVGKRLIN 411



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 15/232 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDT-ASWNTMI 77
           GK  DA  LF ++P  DVVS+N ML+C       ++ +A FD  + + +K T A+  +++
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 78  SGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S       + K   L   +     E NS+  +A++  Y +CG++  A ++F     K V+
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           AW  +I+G    G V  A++LF EM       N +T+ AM++        ++G KLL  M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 190 -IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
               GI P       V+     L+   L ++  +L+   P+  +  AL  L+
Sbjct: 342 SSSYGIEPKVEHYGCVI---DLLARAGLLEEAMELIGTMPMEPNPCALGALL 390



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 120/269 (44%), Gaps = 17/269 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK-----IPQPDVVSYNIMLSCILLNSDDV 55
           M  +  V+WNS+LA +A Q GK  +A  LFD+     +   +    +++ +C  L + D 
Sbjct: 174 MPCRDVVSWNSMLACYA-QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK 232

Query: 56  VAAFDFF---QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                 +    R+ +        ++  + +   ++ A  +F AM  K+ ++W+ +I+G  
Sbjct: 233 GLHLHTYINDNRIEVNSIVG-TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 291

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             G + +A  LFK      V    + + AM+S     G VD  +KL D M +   +    
Sbjct: 292 IHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKV 351

Query: 169 MIAGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
              G V +  A  GL  + + ++  + + PN  +L ++L GC    + +LG+ V + +  
Sbjct: 352 EHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLIN 411

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKL 255
              C     +  L ++Y      +DA K+
Sbjct: 412 LQPCHSGRYIL-LSNIYAAAKKWDDARKV 439


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 339/632 (53%), Gaps = 82/632 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-------------CILLNSDDVVA-AFDFFQRLP 66
              + A  +F ++P  DVV++N ML+             C+LL  DD    A      LP
Sbjct: 178 ASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLP 237

Query: 67  I--------------------------KDTASWNT-MISGFVQKKNMAKARDLFLAMPEK 99
           +                          KD     T ++  + +  ++  A  +F AM  +
Sbjct: 238 LLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR 297

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK---------VAPVK-------------------- 130
           N V+WSA++ G++ CG++ +A  LFK         ++P                      
Sbjct: 298 NEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQL 357

Query: 131 -----------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                       + A  +++S Y K G +D A  LFD+M  K+ V+++A+++GYV+N  A
Sbjct: 358 HALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKA 417

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           ++  ++ R M    ++P+ +++ S++  CSHL++LQ GK  H  V    +  +T+    L
Sbjct: 418 DEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNAL 477

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I MY KCG ++ + ++F  +  +D+V+WN MI+GY  HG G++A  LF  MK +  +PD 
Sbjct: 478 IDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDD 537

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +TF+ L+ AC+H+GLV  G ++F  M + YGI  + +HY  MVDLL R G L EA   I+
Sbjct: 538 VTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQ 597

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP K    ++G LL ACRVHK +DL +  +  +  L P    G +V L+NI++A  ++D
Sbjct: 598 GMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGP-EGTGNFVLLSNIFSAAGRFD 656

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           + A +R+  KE    K PG SWIE+   +H F  GDR H +   I+++L  +   +   G
Sbjct: 657 EAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLG 716

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           Y  D  F L  V EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH   K
Sbjct: 717 YRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIK 776

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           Y++ + KR IIVRD  RFHHFK+G CSCGD+W
Sbjct: 777 YMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 18/281 (6%)

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           M  G + LA  LFD++P   +  +NA+I  Y     A        +      +PN  +  
Sbjct: 74  MICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFP 133

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  CS L  L+  + VH    ++ L  D    T L+ +Y KC     A  +F  +  +
Sbjct: 134 FVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           DVV WNAM++GYA HGK    +     M+D+   P++ T VALL      G +  G    
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLLLMQDD-HAPNASTLVALLPLLAQHGALSQG---- 248

Query: 323 DSMVNDYGIAAKPDH--------YTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFG 371
              V+ Y + A   H         T ++D+  + G LV A  + + M  + +    A+ G
Sbjct: 249 -RAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 372 TLLSACRVHKRLDL-AEFAAMNLFNLNPANAAGCYVQLANI 411
             +   R+ +   L  +  A  L  L+P + A      AN+
Sbjct: 308 GFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANL 348



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 157/373 (42%), Gaps = 46/373 (12%)

Query: 6   TVNWNSVLAGFAKQR---GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
            +N+  ++      R   G L  A+ LFD+IP P +  YN ++    L            
Sbjct: 59  NINFPHIICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSL------------ 106

Query: 63  QRLPIKDTASWNTMISGFVQKKN------MAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            R P      + ++    + + N      + KA    L +    +V   A  +G      
Sbjct: 107 -RGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGL----- 160

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
                +LF           TA++  Y K      A  +F  MP +++V WNAM+AGY  +
Sbjct: 161 ---HADLF---------VSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALH 208

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD---- 232
               D +  L +M      PNAS+L ++L   +   +L  G+ VH    ++    D    
Sbjct: 209 GKYSDTIACLLLMQD-DHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDG 267

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T L+ MY KCG L  A ++F  +  ++ VTW+A++ G+   G+  +A  LF  M  
Sbjct: 268 VLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLA 327

Query: 293 EGMKPDSITFVA-LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           +G+   S T VA  L AC +   + LG Q   +++   G+         ++ +  +AG +
Sbjct: 328 QGLCFLSPTSVASALRACANLSDLCLGKQ-LHALLAKSGLHTDLTAGNSLLSMYAKAGLI 386

Query: 352 VEAVDLIKKMPFK 364
            +A  L  +M  K
Sbjct: 387 DQATTLFDQMVVK 399



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           NS+L+ +AK  G +  A  LFD++   D VSY+ ++S  + N  +D+    F   Q   +
Sbjct: 374 NSLLSMYAKA-GLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 68  K-DTASWNTMISGF-----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           + D A+  ++I        +Q         +   +  + S+  +A+I  Y +CG++D + 
Sbjct: 433 QPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSIC-NALIDMYAKCGRIDLSR 491

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENS 177
           ++F V P + +V+W  MI+GY   G    A  LF +M  +      VT+  +I+    + 
Sbjct: 492 QIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSG 551

Query: 178 WAEDGLKLLRMMIG-LGIRP 196
              +G +   MM    GI P
Sbjct: 552 LVTEGKRWFHMMAHKYGITP 571


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 314/562 (55%), Gaps = 40/562 (7%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L G       ++ A  +F  +  P++ ++N  L  +  NS                    
Sbjct: 30  LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNS-------------------H 70

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--- 129
           W   I  F  + +   A       P  +  ++++++     C  L   V   K+  +   
Sbjct: 71  WFHAIQFFNHQVSSPNA-------PNPDEFTFTSVLKA---CAGLAHVVNGQKIHAMVTK 120

Query: 130 ----KSVVAWTAMISGYMKFGKVDLAEKLFDEM--PTKNLVTWNAMIAGYVENSWAEDGL 183
                ++    ++I  Y K G + LA  LFDEM    +N+V WNAMIAGY +N    D +
Sbjct: 121 QGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAI 180

Query: 184 KLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           ++ RMM   G + PN  +L SVL  C+HL +L LGK +   + +  +         L  M
Sbjct: 181 EVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADM 240

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y KCG + +A ++F +++ +DV++W+ +I G A +G  ++A   F +M D G KP+ + F
Sbjct: 241 YAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVF 300

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           + LL AC HAGLV  G+  F++M  +YG++ K +HY C+VDLL RAG+L +A D+I  MP
Sbjct: 301 MGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMP 360

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
            KP   I+G LL  CR+++     +    ++  L+ ++ +G YV LAN+Y++M + DD A
Sbjct: 361 MKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELD-SDHSGSYVYLANVYSSMGRLDDAA 419

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           + RL M+EN V+K PG SWIEV   VHEF  GD  HPE   I+  ++EL  +MKLAGY P
Sbjct: 420 KCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKP 479

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
             +  +H++ EE KE  L  HSEKLAIAFGLI    GT IRV KNLR+C DCH A K IS
Sbjct: 480 KTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIIS 539

Query: 543 AIEKREIIVRDTTRFHHFKDGT 564
            I KREIIVRD +RFHHFKDG 
Sbjct: 540 GIVKREIIVRDRSRFHHFKDGA 561



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 115/290 (39%), Gaps = 66/290 (22%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V WN+++AG+A Q  K  DA E+F  + Q            ++ N   +V+      
Sbjct: 158 RNVVCWNAMIAGYA-QNEKYSDAIEVFRMMQQ---------FGGVVPNDVTLVSVLPACA 207

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            L   D   W   I GF+ ++ MA    LFL          +A+   Y +CG + +A  +
Sbjct: 208 HLGALDLGKW---IDGFISRREMALG--LFLG---------NALADMYAKCGCITEARRV 253

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F     + V++W+ +I G   +G  D A   F E                          
Sbjct: 254 FNKMEERDVISWSIIICGLAMYGHADEAFGCFYE-------------------------- 287

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPL 239
                M+  G +PN      +L  C+H   ++ G      + K    SP  +    +  L
Sbjct: 288 -----MLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDL 342

Query: 240 ISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISG---YAQHGKGEKALR 285
           +S   + G+L+ A  +   +  K +V+ W A++ G   Y   G+G++ ++
Sbjct: 343 LS---RAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQ 389


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/516 (40%), Positives = 294/516 (56%), Gaps = 11/516 (2%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDK 119
           P +   +W  +I+G VQ      A   F  M      P   +   +   SG +    + K
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 120 AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
            V     K   +  V    +    Y K G  + A K+FDEMP +N+ TWNA ++  V   
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             +D L         GI P    +SSVL  C+ LS L++GK VH L  K+ +  +    +
Sbjct: 189 RYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGS 248

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK--DEGM 295
            L+ MY KCG +EDA + F E+  +++VTWNAMI GYA  G+ + A+ LFD+M      +
Sbjct: 249 ALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRV 308

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
            P+ +TFV +L AC+ AG V++G++ F+SM   YGI    +HY C+VDLLGRAG + +A 
Sbjct: 309 APNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAY 368

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
             IKKMP +P  +++G LL A ++  + +L + AA NLF L+P ++ G +V L+N++AA 
Sbjct: 369 QFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDS-GNHVLLSNMFAAA 427

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            +W++   +R  MK+  + K  G SWI  G  VH F++ D  H     I   L +L   M
Sbjct: 428 GRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEM 487

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           + AGY+PD  FAL  + EE K   + +HSEK+A+AFGLI +P G PIR+ KNLR+CGDCH
Sbjct: 488 EAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCH 547

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            A K+IS I  REIIVRD   FH F+D  CSC DYW
Sbjct: 548 SAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 96  MPEKNSVSWSAMISGYI--ECGQLDKAV--ELFKV--APVKSVVAWTAMISGYMKFGKVD 149
           MP  +  S ++++   +  +C +L +A   ++ K    P+ S + +  +++ Y K  + +
Sbjct: 1   MPFLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFI-YNHLVNMYSKLDRPN 59

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A+ L    P +++VTW A+IAG V+N      L     M    I+PN  +         
Sbjct: 60  SAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASG 119

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L S  +GKQVH L  K+    D         MY K G  E+A K+F E+  +++ TWNA
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
            +S     G+ + AL  F + + EG++P      ++L AC    ++++G +   ++    
Sbjct: 180 YLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKA 238

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
            +       + +VD+ G+ G + +A     +MP
Sbjct: 239 CVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP 271



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLD-- 118
           F  +P ++ A+WN  +S  V +     A   F+   ++       M+S  +  C  L   
Sbjct: 166 FDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVL 225

Query: 119 ---KAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
              K+V     K   V ++   +A++  Y K G ++ AE+ FDEMP +NLVTWNAMI GY
Sbjct: 226 EVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGY 285

Query: 174 VENSWAEDGLKLLRMMIGLGIR--PNASSLSSVLLGCSHLSSLQLGKQVHQ-LVFKSPLC 230
                A+  + L   M     R  PN  +   VL  CS   S+ +G ++ + +  +  + 
Sbjct: 286 AHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIE 345

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
                   ++ +  + G +E A +   ++  R  V  W A++      GK E
Sbjct: 346 PGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 397



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 106/231 (45%), Gaps = 36/231 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDTASWNTMI- 77
           G ++DA+  FD++P+ ++V++N M+        +D  V  FD       +   ++ T + 
Sbjct: 258 GSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVC 317

Query: 78  --SGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
             S   +  ++    ++F +M      E  +  ++ ++      G +++A +  K  P++
Sbjct: 318 VLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR 377

Query: 131 SVVA-WTAMISGYMKFGKVDL----AEKLF--DEMPTKNLVTWNAMIAGYVENSWAEDGL 183
             V+ W A++     FGK +L    A+ LF  D + + N V  + M A      W E  L
Sbjct: 378 PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAA--AGRWEEATL 435

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            + + M  +GI+  A        GCS +++   G  VH  VF++   KDT+
Sbjct: 436 -VRKEMKDVGIKKGA--------GCSWITA---GNAVH--VFQA---KDTS 469


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/586 (36%), Positives = 330/586 (56%), Gaps = 24/586 (4%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFD 60
           T   WN+VL+G A+  G+ ++A  +  ++ +    PD  + + +L  +  N+  V    +
Sbjct: 271 TLATWNAVLSGCARH-GRDREALAVLRRMLEQGLWPDATTVSSLLKSVA-NAGMVRHGME 328

Query: 61  ----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
               F +   + D  +   ++  + +   +  AR +F  +  +N  +W+++++G+   GQ
Sbjct: 329 VHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQ 388

Query: 117 LDKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTW 166
            + A+EL       ++ P  +V  W  +I+GY   G    A  L  ++     T N+V+W
Sbjct: 389 FEAALELVERMKRNRLDP--NVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSW 446

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+G   N   ED     + M   G++P+  ++  +L  C+ L+ L+ GK++H    +
Sbjct: 447 TSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALR 506

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T LI MY K G L  A ++F  IQ K++V  NAM++G A HG+  +A+ L
Sbjct: 507 RAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITL 566

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  +   G+KPDSITF ALL AC   GL+  G +YFD+M   YG+    ++Y CMVDLL 
Sbjct: 567 FHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLA 626

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R+G L EA+ LI++ P  P  +++G LL+ C +H  LDLAE AA NLF L P N+A  Y+
Sbjct: 627 RSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSAN-YL 685

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            + ++Y   + +D+   ++ +MK   V   PG+SWI++   +H F      HPE   I E
Sbjct: 686 MIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHPETAEICE 745

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVF 525
           +L  L +++K+ GYVPD    ++ V EE KE+LLL H+EKLAI +GLI       P+RV 
Sbjct: 746 ELMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLLLCHTEKLAITYGLIHSDASRMPVRVI 805

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KN R+C DCH   K+ISA+  R+II+RD  RFHHF DG CSC DYW
Sbjct: 806 KNTRMCSDCHEVAKHISALCGRQIILRDAVRFHHFVDGNCSCNDYW 851



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 132/262 (50%), Gaps = 8/262 (3%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVD----LAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           L +  P    VAW A+++  ++ G VD    LA ++  + P   L TWNA+++G   +  
Sbjct: 228 LLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGR 287

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
             + L +LR M+  G+ P+A+++SS+L   ++   ++ G +VH    +  L  D    T 
Sbjct: 288 DREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTA 347

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L+ MY KCG L+ A ++F  ++ +++ TWN++++G+A  G+ E AL L ++MK   + P+
Sbjct: 348 LVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPN 407

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
             T+  L+   +  GL    +      +   G+      +T ++      G+  ++ +  
Sbjct: 408 VTTWNGLITGYSLNGLSSQAMLLL-RQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFF 466

Query: 359 KKMP---FKPQPAIFGTLLSAC 377
           K+M     +P       LL AC
Sbjct: 467 KEMQKDGVQPSLVTMLVLLRAC 488


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/407 (47%), Positives = 263/407 (64%), Gaps = 1/407 (0%)

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W +MIAGYV+   A++ + L   M   G++ N  ++ +VL  C+ L +L LG ++H+  
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 253

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            +    ++      LI MY KCG LE+ACK+F E++ + VV+W+AMI G A HG+ E+AL
Sbjct: 254 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 313

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           RLF  M   G++P+ +TF+ LL AC+H GL+  G ++F SM  DYGI  + +HY CMVDL
Sbjct: 314 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 373

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           L RAG L EA + I  MP KP   ++G LL ACRVHK +++AE A  +L  L+P N  G 
Sbjct: 374 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLN-DGY 432

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+NIYA   +W+D AR+R  MK+  V K PG+S I V  VVHEF +G+  HP+   I
Sbjct: 433 YVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQI 492

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
            ++ +EL + M+L GYVP+    L  + E  K + +  HSEKLA+ FGL+  P  TPIR+
Sbjct: 493 FQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRI 552

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K ISAI  REI+VRD  RFH F D +CSC DYW
Sbjct: 553 MKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 135/297 (45%), Gaps = 26/297 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFF 62
           T  WNS L   A+    + DA  LF ++ Q DV       S +L   LN  D+       
Sbjct: 126 TFVWNSCLKALAEGDSPI-DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 184

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLD 118
             +      SW +MI+G+VQ     +A  LF  M E     N V+  A+++   + G LD
Sbjct: 185 GVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALD 244

Query: 119 KAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
             + + + +      ++V     +I  Y+K G ++ A K+F+EM  + +V+W+AMI G  
Sbjct: 245 LGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 304

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            +  AE+ L+L   M  +GI PN  +   +L  CSH+  +  G++     F + + +D  
Sbjct: 305 MHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRR-----FFASMTRD-Y 358

Query: 235 ALTPLISMY-------CKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKA 283
            + P I  Y        + G L +A +  L +  K + V W A++     H   E A
Sbjct: 359 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 415



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 43/253 (16%)

Query: 151 AEKLFD--EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           A+++F   E        WN+ +    E     D + L   +    + P+  + SSVL  C
Sbjct: 112 AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 171

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
            +L  L  G+ +H +V                                   ++    +W 
Sbjct: 172 LNLLDLSNGRILHGVV-----------------------------------EKVGFRSWT 196

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           +MI+GY Q GK ++A+ LF KM++ G+K + +T VA+L AC   G +DLG++  +   N 
Sbjct: 197 SMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHE-YSNR 255

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRLDL 385
           +G          ++D+  + G L EA  + ++M  +      A+ G L    R  + L L
Sbjct: 256 HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRL 315

Query: 386 AEFAAMNLFNLNP 398
             F+ M+   + P
Sbjct: 316 --FSDMSQVGIEP 326



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 35/258 (13%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCG---D 248
           ++P +S    + L  +  S  +L +QVH  + K+  PL     ++ PL  +   C     
Sbjct: 55  VKPQSSETLKIDLLRNFNSPFEL-RQVHAQIIKTNAPL-----SILPLTRVGLVCAFTPS 108

Query: 249 LEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
              A ++F  +E Q+ +   WN+ +   A+      A+ LF +++   + PD+ T  ++L
Sbjct: 109 FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 168

Query: 307 LACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--- 362
            AC    L+DL   +    +V   G  +    +T M+    + GK  EA+ L  KM    
Sbjct: 169 RAC--LNLLDLSNGRILHGVVEKVGFRS----WTSMIAGYVQCGKAKEAIHLFAKMEEAG 222

Query: 363 FKPQPAIFGTLLSACRVHKRLDLA----EFAAMNLF--NLNPANAAGCYVQLANIYAAMK 416
            K        +L+AC     LDL     E++  + F  N+  +N       L ++Y    
Sbjct: 223 VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNT------LIDMYVKCG 276

Query: 417 KWDDVARIRLSMKENNVV 434
             ++  ++   M+E  VV
Sbjct: 277 CLEEACKVFEEMEERTVV 294


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 310/489 (63%), Gaps = 7/489 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  V+WN+++ G+ K R ++  A E+F+++ + ++VS+N +++  L+    V  A  
Sbjct: 64  MPVKNVVSWNTMIDGYGKNR-EVDKAIEVFERMHERNMVSWNAVIAA-LVQCGRVEEARR 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P +D  SW TM+ G  +   + +AR +F  MPE+N VSW+AM++GY +  +LD+A
Sbjct: 122 RFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF+  P +++ +W  MI+G+++ G++  A K+F+EMP KN+V+W  MI GYV+   +E
Sbjct: 182 FDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESE 241

Query: 181 DGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
             LK+   MI   G RPN  +  +VL  CS ++ L  G+QVH L+ KS     T   + L
Sbjct: 242 SALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASAL 301

Query: 240 ISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           ++MY KCG+L  A K+F  + I ++D+V WN MI+ YA HG G +A+ LF+ M+  G KP
Sbjct: 302 LNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKP 361

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           + +++V LL AC+HAGLVD G+ YFD +  D  I  + DH+ C+VDL GRAG+L EA D 
Sbjct: 362 NDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDF 421

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           IK++  K   +I+G LL+ C  H  L++ + AA  L   +P N AG Y+ L+NIYA+ +K
Sbjct: 422 IKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPEN-AGTYLLLSNIYASGRK 480

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + +R+RL MKE  + K PG SWIEVG  VH F + D+ H +   I+  + ++   MK 
Sbjct: 481 WREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYSLVHDIHAEMK- 539

Query: 478 AGYVPDLEF 486
           A +VP+ +F
Sbjct: 540 AEHVPNNDF 548



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 208/414 (50%), Gaps = 78/414 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAF 59
           M+ +  V W +V++G+ K  G + DA+ LFD++    DVV++  MLS   +    +  A 
Sbjct: 1   MHERDVVTWTAVISGYIKC-GLIVDARRLFDRVDAIKDVVTWTAMLSG-YVRLKRIEEAE 58

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F+ +P+K+  SWNTMI G+ + + + KA ++F  M E+N VSW+A+I+  ++CG++++
Sbjct: 59  RLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEE 118

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A   F   P + V++WT M+ G  + G+VD A K+FD MP +N+V+WNAM+ GY +N   
Sbjct: 119 ARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRL 178

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           ++   L   M      P                                  ++ ++   +
Sbjct: 179 DEAFDLFERM------PE---------------------------------RNLSSWNTM 199

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPD 298
           I+ + + G+L  A K+F E+  K+VV+W  MI+GY Q G+ E AL++F +M KD G +P+
Sbjct: 200 ITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPN 259

Query: 299 SITFVALLLACNHAGLVDLGIQ---------YFD------SMVNDYG------------- 330
             TFV +L AC+    +  G Q         Y D      +++N Y              
Sbjct: 260 EGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFD 319

Query: 331 --IAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
             + ++ D   +  M+      G  +EA++L + M    FKP    +  LLSAC
Sbjct: 320 DVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSAC 373


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/560 (39%), Positives = 321/560 (57%), Gaps = 23/560 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +F     P+V  Y  ++       D  V++ ++F  + +      ++++       +
Sbjct: 100 ASRIFQYTHNPNVYLYTALI-------DGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 152

Query: 86  MAKARDLFLAMPEKNSVSWSAMISG--------------YIECGQLDKAVELFKVAPVKS 131
           + KA    LA+ E   V   A+  G              Y +CG+L  A  +F+  P + 
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP-ED 211

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VVA T MIS Y   G V+ A  +F  +  K+ V W AMI G+V N      L+  R M G
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG 271

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +RPN  ++  VL  CS L +L++G+ VH  + K  +  +      LI+MY +CG +++
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F E++ +DV+T+N MISG + +GK  +A+ LF  M    ++P ++TFV +L AC+H
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 391

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLVD G + F SM  DYG+  + +HY CMVDLLGR G+L EA DLI+ M   P   + G
Sbjct: 392 GGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 451

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           TLLSAC++HK L+L E  A  L +   A+ +G YV L+++YA+  KW + A++R  MKE 
Sbjct: 452 TLLSACKMHKNLELGEQVAKVLEDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEA 510

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PG S IEV   +HEF  GD  HP    I+EKL+EL + ++L GY P+ E  L  +
Sbjct: 511 GMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDI 570

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +  KE  L  HSE+LAI +GLI     T IRV KNLRVC DCH A K I+ I +R+++V
Sbjct: 571 EDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVV 630

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFH+F++G CSCGDYW
Sbjct: 631 RDRNRFHYFENGACSCGDYW 650



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 49/351 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD--VVAAFDFFQRLPIKDTASWNTMIS 78
           G+L DA+ +F+++P+ DVV+  +M+S     SD   V  A   F R+  KDT  W  MI 
Sbjct: 196 GELGDARRVFEEMPE-DVVASTVMISSY---SDQGLVEEAGAVFSRVRRKDTVCWTAMID 251

Query: 79  GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKA----VELFKVAPVK 130
           GFV+ + M +A + F  M       N  +   ++S   + G L+        + K     
Sbjct: 252 GFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL 311

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           ++    A+I+ Y + G +D A+ +FDEM  ++++T+N MI+G   N  +   ++L R+MI
Sbjct: 312 NLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMI 371

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G  +RP   +   VL  CSH   +  G +    +F S + +D   + P I  Y       
Sbjct: 372 GRRLRPTNVTFVGVLNACSHGGLVDFGFK----IFHS-MTRD-YGVEPQIEHY------- 418

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
                              M+    + G+ E+A  L   MK   M PD I    LL AC 
Sbjct: 419 -----------------GCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACK 458

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
               ++LG Q    ++ D G  A    Y  +  +   +GK  EA  +  KM
Sbjct: 459 MHKNLELGEQ-VAKVLEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKM 507



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 36/286 (12%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +D A ++F      N+  + A+I G+V +    D ++L   M+   I P+   ++S+L  
Sbjct: 97  IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--------- 258
           C    +L+ G++VH    K  L  +      ++ +Y KCG+L DA ++F E         
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216

Query: 259 ---------------------IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
                                ++RKD V W AMI G+ ++ +  +AL  F  M+ E ++P
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 276

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           +  T V +L AC+  G +++G ++  S +  + I         ++++  R G + EA  +
Sbjct: 277 NEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 335

Query: 358 IKKMPFKPQPAI-FGTLLSACRVH--KRLDLAEFAAMNLFNLNPAN 400
             +M  K +  I + T++S   ++   R  +  F  M    L P N
Sbjct: 336 FDEM--KDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTN 379



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 211 LSSLQLGKQVHQ-LVFKSPLCKDTTALTP-----LISMYCKCGDLEDACKLFLEIQRKDV 264
           +S LQ  K ++Q L   + L ++  +  P     L+    KC  ++ A ++F      +V
Sbjct: 53  ISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 112

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
             + A+I G+   G    A++L+ +M  + + PD+    ++L AC     +  G +   S
Sbjct: 113 YLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE-VHS 171

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
                G+++       +++L G+ G+L +A  + ++MP
Sbjct: 172 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 337/617 (54%), Gaps = 48/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M+ K  V +N+++ G +K+ G    A +LF  + +  + + +   S IL           
Sbjct: 196 MHDKDAVTYNAMMMGCSKE-GLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLL 254

Query: 50  --------LNSDDVVAAF------DF-------------FQRLPIKDTASWNTMISGFVQ 82
                   L S  V+  F      DF             F  +P +D  S+N +I+ +  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMIS--GYIECGQLDKAV--ELFKVAPVKSVVA 134
            +  A    LF  M     ++  + ++ M+S  G +    + K +  +L  +      + 
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I  Y K G +D A+  F     K+ ++W A+I GYV+N   E+ L+L   M   G+
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 434

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP+ ++ SS++   S L+ + LG+Q+H  + +S       + + L+ MY KCG L++A +
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F E+  ++ ++WNA+IS YA +G+ + A+++F+ M   G  PDS+TF+++L AC+H GL
Sbjct: 495 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 554

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            D  ++YF  M + Y I+   +HY C++D LGR G   +   ++ +MPFK  P I+ ++L
Sbjct: 555 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            +CR+H   +LA  AA  LF + P +A   YV L+NIYA   +W+D A ++  M++  V 
Sbjct: 615 HSCRIHGNQELARVAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVR 673

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K  GYSW+E+   ++ F S D   P +  I ++L  L K M   GY PD+  ALH V  E
Sbjct: 674 KESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHE 733

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           +K + L +HSE+LAIAF L+  P GTPIR+ KNL  C DCH   K IS I  R+IIVRD+
Sbjct: 734 LKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDS 793

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFKDG CSCGDYW
Sbjct: 794 RRFHHFKDGVCSCGDYW 810



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 180/400 (45%), Gaps = 43/400 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +    W  ++   A   G+  DA  LF  +    V+   + ++ +L      V +   F 
Sbjct: 103 RNATTWTIMMRAHAAA-GRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFA 161

Query: 64  RLPIKDTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                DT  +  NT++  + +   +A AR +FL M +K++V+++AM+ G  + G   +A+
Sbjct: 162 IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 122 ELF---------------------------------------KVAPVKSVVAWTAMISGY 142
           +LF                                       +   V +V    +++  Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K   +D   +LFDEMP ++ V++N +IA Y  N  A   L+L R M  LG        +
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L     L  + +GKQ+H  +    L  +      LI MY KCG L+ A   F     K
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEK 401

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
             ++W A+I+GY Q+G+ E+AL+LF  M+  G++PD  TF +++ A +   ++ LG Q  
Sbjct: 402 SAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             ++   G  +     + +VD+  + G L EA+    +MP
Sbjct: 462 SYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 157/350 (44%), Gaps = 36/350 (10%)

Query: 37  DVVSYNIMLSC-ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           DV++Y + L    LL+S  +  A   F ++P K+  S N ++S +    ++  A+ LFL+
Sbjct: 40  DVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLS 99

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVAW-------------- 135
            P +N+ +W+ M+  +   G+   A+ LF+      V P +  V                
Sbjct: 100 SPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHP 159

Query: 136 --------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
                           ++  Y K G +  A ++F EM  K+ VT+NAM+ G  +      
Sbjct: 160 FAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQ 219

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+L   M   GI     + SS+L   + ++ L LG QVH LV +S    +      L+ 
Sbjct: 220 ALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD 279

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y KC  L+D  +LF E+  +D V++N +I+ YA +      LRLF +M+  G     + 
Sbjct: 280 FYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP 339

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           +  +L        V +G Q    +V   G+A++      ++D+  + G L
Sbjct: 340 YATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGML 388


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 313/536 (58%), Gaps = 41/536 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV------------ 121
           N++I  + +   +A AR +F  MP ++  SW+++I+GY +    D+A+            
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFK 162

Query: 122 -------ELFKVAPVKS--------------------VVAWTAMISGYMKFGKVDLAEKL 154
                   L K A   +                    V   +A++  Y + G++D+A  +
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD++ +KN V+WNA+IAG+      E  L +   M   G      + SSV    + + +L
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GK VH  + KS           ++ MY K G + DA K+F  + +KDVVTWN+M++ +
Sbjct: 283 EQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAF 342

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           AQ+G G +A+  F++M+  G+  + ITF+++L AC+H GLV  G QYFD M+ +Y +  +
Sbjct: 343 AQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPE 401

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            DHY  +VDLLGRAG L +A+  I KMP KP  A++G LL +CR+HK   + +FAA ++F
Sbjct: 402 IDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVF 461

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L+P +  G  V L NIYA+  +WD  AR+R  MK   V K P  SW+E+   VH F + 
Sbjct: 462 ELDPDDT-GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVAN 520

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  HP    I++K +E+  +++ AGYVP+ ++ L  V E+ ++  L +HSEK+A+AF LI
Sbjct: 521 DDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALI 580

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
            +PLG  IR+ KN+R+CGDCH A +YIS + KREI+VRDT RFHHF  G+CSCGDY
Sbjct: 581 NMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 1/231 (0%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           SV    ++I  Y K G V  A ++FD MP +++ +W ++IAGY +N   ++ L LL  M+
Sbjct: 98  SVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGML 157

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
               +PN  + +S+L      +S  +G+Q+H L  K     D    + L+ MY +CG ++
Sbjct: 158 RGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMD 217

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A  +F +++ K+ V+WNA+I+G+A+ G GE  L +F +M+  G +    T+ ++  A  
Sbjct: 218 MAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA 277

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             G ++ G      M+   G          ++D+  ++G +++A  +  ++
Sbjct: 278 GIGALEQGKWVHAHMIKS-GERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 12/234 (5%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           D  +A FD   +L  K+  SWN +I+GF +K +      +F  M     E    ++S++ 
Sbjct: 217 DMAIAVFD---QLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 273

Query: 109 SGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S     G L++       + K     S      ++  Y K G +  A K+FD +  K++V
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVV 333

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TWN+M+  + +     + +     M   G+  N  +  S+L  CSH   ++ GKQ   ++
Sbjct: 334 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM 393

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
            +  L  +      ++ +  + G L DA     ++  K     W A++     H
Sbjct: 394 KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S++  C+   SL   + +H  +  S           LI +YCKCG + DA ++F  +  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D+ +W ++I+GYAQ+   ++AL L   M     KP+  TF +LL A   +    +G Q  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI- 187

Query: 323 DSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFK 364
                 + +  K D +      + ++D+  R G++  A+ +  ++  K
Sbjct: 188 ------HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK 229


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 289/525 (55%), Gaps = 40/525 (7%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA------------------ 127
           + +A+ +F  MP  ++VSW+A+I+ Y++ G L +AV + + A                  
Sbjct: 169 LHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTA 228

Query: 128 ---------------------PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                                  +SV   TA +  Y+K G++  A ++FD+M  K+ V W
Sbjct: 229 CARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAW 288

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            AM+ GY  N    + L L   M   G+RP+  +++  L  C+ L +L LG+Q  ++V  
Sbjct: 289 GAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDW 348

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                +    T LI MY KCG   +A  +F ++++KD++ WNAMI G    G  + A  L
Sbjct: 349 DEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTL 408

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
             +M+  G+K +  TF+ LL +C H GL+  G +YF +M   Y I+ + +HY C+VDLL 
Sbjct: 409 IGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLS 468

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           RAG L EA  LI  MP      I G LL  C++H+  +LAE     L  L P N +G YV
Sbjct: 469 RAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWN-SGNYV 527

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+NIY+   +W+D A++RL MKE  V K+P  SW+E    VHEFR GD+ HP    I++
Sbjct: 528 MLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYK 587

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
           KL EL   MK  GY P  E  +  V +E KE  L+ HSEKLAIAF L+    G  IRV K
Sbjct: 588 KLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTK 647

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLRVC DCH A K IS I  REIIVRD  RFH F+DG+CSC DYW
Sbjct: 648 NLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 1/226 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T++++ Y + G +  A+++FDEMP  + V+W A+I  Y++     + + + R     G+R
Sbjct: 157 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 216

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P++ +   VL  C+ ++ L  G+ V +   +  + +     T  + +Y KCG++  A ++
Sbjct: 217 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 276

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F +++ KD V W AM+ GYA +G   +AL LF  M+ EG++PD       L AC   G +
Sbjct: 277 FDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGAL 336

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           DLG Q    MV+       P   T ++D+  + G   EA  + ++M
Sbjct: 337 DLGRQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQM 381



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 196 PNASSLS--SVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+++Y +CG L  A
Sbjct: 113 PNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRA 172

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F E+     V+W A+I+ Y   G   +A+ +       GM+PDS T V +L AC   
Sbjct: 173 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 232

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
             +  G   + +   + GIA      T  VDL  + G++ +A ++  KM  K   A +G 
Sbjct: 233 ADLATGETVWRAAEQE-GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA-WGA 290

Query: 373 LLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
           ++   A   H R  L  F AM    + P     CY     + A  +
Sbjct: 291 MVGGYASNGHPREALDLFLAMQAEGVRP----DCYAVAGALSACTR 332



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 16/250 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++  A + F ++  KD  +W  M+ G+    +  +A DLFLAM  +    +  + +  +S
Sbjct: 269 EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALS 328

Query: 110 GYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G LD   +  ++      + + V  TA+I  Y K G    A  +F +M  K+++ 
Sbjct: 329 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIV 388

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VH 221
           WNAMI G       +    L+  M   G++ N ++   +L  C+H   +Q G++    + 
Sbjct: 389 WNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMT 448

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
           +L   SP  +    +  L+S   + G L++A +L  ++    + V   A++ G   H   
Sbjct: 449 KLYHISPRIEHYGCIVDLLS---RAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNA 505

Query: 281 EKALRLFDKM 290
           E A  +  ++
Sbjct: 506 ELAEHVLTQL 515


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 334/580 (57%), Gaps = 49/580 (8%)

Query: 38  VVSYNIMLSCILLNS--------DDVVAAFDFFQRLPI--KDTASWNTMISGFVQKKNMA 87
           VV Y   +S  L NS         DV  A+  F  +PI  +D  SWN++ISGF       
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 88  KARDLFLAMP-------EKNSVSWSAMISGYIECGQLDKAVELFKVAP--------VKSV 132
           +A   F  M        E N V+  A++    E G ++ +  + +            K V
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM--- 189
           V  TA++  + + G + LA ++FD +  KN+V W+AMIAGY + S  E+ L+L R M   
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 190 ---IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
              +G+ ++PNA +L SV+  CS L + +    +H+    + L +D    + LI M  KC
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 247 GDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           GD+E   ++F E+    + VV+W++MI     HG+G++AL LF +M+  G +P+ IT+++
Sbjct: 431 GDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYIS 490

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+HAGLV+ G   F+SM  DYG++    HY C+VDLLGRAG L EA ++I  MP K
Sbjct: 491 VLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
              A++G+LL+AC +H    L E     + +L+ +N+ G +V LAN+Y    +WDDV R+
Sbjct: 551 ADLALWGSLLAACHLHGNCKLGEIVEKKILSLD-SNSVGHHVLLANMYEDAGRWDDVVRM 609

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPD 483
           R+ ++ + + K+PG S+IE+G  V+ F + DR HPE   I+++L  L++R+ K A YV  
Sbjct: 610 RVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVT- 668

Query: 484 LEFALHAVGEEVKEQLLL--FHSEKLAIAFGLIKVP----------LGTPIRVFKNLRVC 531
            E  L+    ++   +L   +HSE+LAIAFGLI +             TPIR+ KNLRVC
Sbjct: 669 -ETGLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVC 727

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH  TK +S +  RE+IVRD  RFHHF+DG CSCGDYW
Sbjct: 728 RDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 165/371 (44%), Gaps = 57/371 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K T +WNS++A  A Q    + A   F ++    V S N     +L       A     +
Sbjct: 16  KDTFHWNSLIAKNATQ--NPQTALTFFTRMQAHAVPSNNFTFPALL------KACAALRR 67

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            LP     ++ T          +  A D F A         +A++  Y +CG    A ++
Sbjct: 68  LLPTLQVHAYLT---------RLGLAADRFSA---------AALVDAYGKCGHAYYAAQV 109

Query: 124 FKVAPVKSV--VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           F   P  SV  V+WTA+IS Y   G VD A K F  M  + +  W              D
Sbjct: 110 FDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRM--RWMRGW--------------D 153

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           G +      G+ +    + +S+  +GC   + L+ G  VH LV K      T     ++ 
Sbjct: 154 GSEC----CGVDVVSLGALVSACAVGCGS-NCLRRGSAVHGLVVKYGFGVSTHLGNSMVH 208

Query: 242 MYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MK 296
           MY  C D+  A ++F  + I+++DVV+WN++ISG+  +G+ E+ALR F+ M  EG   ++
Sbjct: 209 MYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVE 268

Query: 297 PDSITFVALLLACNHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           P+ +T +ALL +C   G V+      +Y  S  +   +A      T ++D+  R G L  
Sbjct: 269 PNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLAL 328

Query: 354 AVDLIKKMPFK 364
           A ++   +  K
Sbjct: 329 AREIFDGVEGK 339



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           I  KD   WN++I+  A     + AL  F +M+   +  ++ TF ALL AC     +   
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +Q   + +   G+AA       +VD  G+ G    A  +  +MP
Sbjct: 72  LQ-VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMP 114


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 286/442 (64%), Gaps = 3/442 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI- 190
           V   T ++  Y +FG VD A  +F  MP +N+V+W+AMIA Y +N  A + L+  R M+ 
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276

Query: 191 -GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                 PN+ ++ SVL  C+ L++L+ GK +H  + +  L      ++ L++MY +CG L
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E   ++F  +  +DVV+WN++IS Y  HG G+KA+++F++M   G  P  +TFV++L AC
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H GLV+ G + F++M  D+GI  + +HY CMVDLLGRA +L EA  +++ M  +P P +
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G+LL +CR+H  ++LAE A+  LF L P N AG YV LA+IYA  + WD+V R++  ++
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVKKLLE 515

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
              + K+PG  W+EV   ++ F S D  +P +  IH  L +L + MK  GY+P  +  L+
Sbjct: 516 HRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLY 575

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            +  E KE+++L HSEKLA+AFGLI    G PIR+ KNLR+C DCH  TK+IS   ++EI
Sbjct: 576 ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEI 635

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           +VRD  RFH FK+G CSCGDYW
Sbjct: 636 LVRDVNRFHRFKNGVCSCGDYW 657



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I  Y   G VD A K+FD+   + +  WNA+          E+ L L   M  +G+ 
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175

Query: 196 PNASSLSSVLLGC----SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            +  + + VL  C      ++ L  GK++H  + +         +T L+ MY + G ++ 
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDY 235

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLAC 309
           A  +F  +  ++VV+W+AMI+ YA++GK  +ALR F +M  E     P+S+T V++L AC
Sbjct: 236 ASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQAC 295

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
                ++ G +     +   G+ +     + +V + GR GKL
Sbjct: 296 ASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKL 336



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   ++L C H SSL    +VH+ +  +   +D    T LI MY   G ++ A K+
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC------ 309
           F + +++ +  WNA+       G GE+ L L+ KM   G++ D  T+  +L AC      
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 310 -NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            NH     +  +   + +   G ++     T +VD+  R G +  A  +   MP +
Sbjct: 195 VNHL----MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 56/287 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+W++++A +AK  GK  +A   F +           M+     +S + V    
Sbjct: 243 MPVRNVVSWSAMIACYAKN-GKAFEALRTFRE-----------MMRETKDSSPNSVTMVS 290

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q            +I G++ ++ +    D  L +        SA+++ Y  CG+L+  
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGL----DSILPV-------ISALVTMYGRCGKLEVG 339

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     + VV+W ++IS Y   G    A ++F+E                       
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE----------------------- 376

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPL 239
                   M+  G  P   +  SVL  CSH   ++ GK++ + +++    K        +
Sbjct: 377 --------MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACM 428

Query: 240 ISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
           + +  +   L++A K+  +++ +     W +++     HG  E A R
Sbjct: 429 VDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAER 475


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/537 (38%), Positives = 295/537 (54%), Gaps = 40/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA------ 127
            ++++ + +   + +A+ +F  MP  ++VSW+A+I+ Y++ G L +AV + + A      
Sbjct: 110 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 128 ---------------------------------PVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                              +SV   TA +  Y+K G++  A ++
Sbjct: 170 PDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREV 229

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD+M  K+ V W AM+ GY  N    + L L   M   G+RP+  +++  L  C+ L +L
Sbjct: 230 FDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGAL 289

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
            LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ WNAMI G 
Sbjct: 290 DLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGL 349

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
              G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M   Y I+ +
Sbjct: 350 GMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPR 409

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY C+VDLL RAG L EA  LI  MP      I G LL  C++H+  +LAE     L 
Sbjct: 410 IEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLI 469

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L P N +G YV L+NIY+   +W+D A++RL MKE  V K+P  SW+E    VHEFR G
Sbjct: 470 RLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVG 528

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKLAIAF L+
Sbjct: 529 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLL 588

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               G  IRV KNLRVC DCH A K IS I  REIIVRD  RFH F+DG+CSC DYW
Sbjct: 589 VTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 196 PNASSLS--SVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+++Y +CG L  A
Sbjct: 66  PNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRA 125

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F E+     V+W A+I+ Y   G   +A+ +       GM+PDS T V +L AC   
Sbjct: 126 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 185

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
             +  G   + +   + GIA      T  VDL  + G++ +A ++  KM  K   A +G 
Sbjct: 186 ADLATGETVWRAAEQE-GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA-WGA 243

Query: 373 LLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
           ++   A   H R  L  F AM    + P     CY     + A  +
Sbjct: 244 MVGGYASNGHPREALDLFLAMQAEGVRP----DCYAVAGALSACTR 285



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 16/250 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++  A + F ++  KD  +W  M+ G+    +  +A DLFLAM  +    +  + +  +S
Sbjct: 222 EMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALS 281

Query: 110 GYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G LD   +  ++      + + V  TA+I  Y K G    A  +F +M  K+++ 
Sbjct: 282 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIV 341

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VH 221
           WNAMI G       +    L+  M   G++ N ++   +L  C+H   +Q G++    + 
Sbjct: 342 WNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMT 401

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
           +L   SP  +    +  L+S   + G L++A +L  ++    + V   A++ G   H   
Sbjct: 402 KLYHISPRIEHYGCIVDLLS---RAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNA 458

Query: 281 EKALRLFDKM 290
           E A  +  ++
Sbjct: 459 ELAEHVLTQL 468


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/479 (40%), Positives = 304/479 (63%), Gaps = 7/479 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAA 58
           M  +  ++WNSV+AG     G L  A   F + P+ +V S+N ML+ +  L   DD   A
Sbjct: 65  MPSRNVISWNSVVAGCLAH-GDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDD---A 120

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           +  F  +P ++  S+ TM+ G  ++  +A+AR++F AMPE+N VSW+AMI+GY+E    D
Sbjct: 121 WALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFD 180

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A +LF+  P K+VVA TAMI+GY K G V+ A +LFD +P K++++WNAMI GYV N  
Sbjct: 181 EARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ +KL  +M   G++P+ ++L ++L  CS L+ L+ G+  H +  K+ L   T+    
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNA 300

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L++MY KCG++ ++  +F+ ++ +D+V+WN +I+ YAQHGK +KA+ LF +M+  G+ P+
Sbjct: 301 LMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPN 360

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            IT +++L AC H G V+  ++ FD M + Y I+   +HY C+VD+LGRAG+L +A   I
Sbjct: 361 DITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYI 420

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           KKMPF+ +  ++G LL A + H  + L E AA  L   +   ++G YV L+NIYAA   W
Sbjct: 421 KKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSV-SSGPYVMLSNIYAAAGMW 479

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
            +V R+R  MKE  V K PGYSW E+   V+ F  GD  HPE+  I  +L+++   M++
Sbjct: 480 GEVNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKIISELRKISFHMQM 538



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 146/279 (52%), Gaps = 28/279 (10%)

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ-LDKAVE 122
           RL ++D    N  I+   +  ++A AR +F AMP ++ VSW+A+++     G+ L  A  
Sbjct: 5   RLLVRD----NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARR 60

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV-----ENS 177
           LF   P ++V++W ++++G +  G +D A   F   P +N+ +WNAM+AG V     +++
Sbjct: 61  LFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDA 120

Query: 178 WAEDG-------LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV------ 224
           WA  G       +    M+ GL  R   +    V       + +     +   V      
Sbjct: 121 WALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFD 180

Query: 225 -----FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
                F++   K+  A T +I+ YCK GD+E A +LF  I  KDV++WNAMI+GY  +G 
Sbjct: 181 EARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           GE+A++L   M  EG+KPD  T +A+L AC+   L+  G
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQG 279



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 18/227 (7%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW-AEDGLKLLRMMIGLGIRPN 197
           I+   + G V  A ++FD MP +++V+WNA++       W A   L   R +       N
Sbjct: 14  ITALARAGDVAAARRVFDAMPRRDVVSWNALLTAL----WRAGRDLPAARRLFDDMPSRN 69

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             S +SV+ GC     L          F     ++  +   +++   + G ++DA  LF 
Sbjct: 70  VISWNSVVAGCLAHGDLDAASA----YFARAPRRNVASWNAMLAGLVRLGRMDDAWALFG 125

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E+ +++VV++  M+ G A+ G+  +A  +FD M +  +    +++ A++       + D 
Sbjct: 126 EMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNL----VSWAAMITGYVENAMFDE 181

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
             + F++M +   +A      T M+    + G +  A  L   +P K
Sbjct: 182 ARKLFEAMPDKNVVAC-----TAMITGYCKDGDVESARRLFDGIPVK 223



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 19/207 (9%)

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG-EKALRLF 287
           L +D   +T L     + GD+  A ++F  + R+DVV+WNA+++   + G+    A RLF
Sbjct: 7   LVRDNQRITAL----ARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLF 62

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
           D M    +    I++ +++  C   G +D    YF +      +A+    +  M+  L R
Sbjct: 63  DDMPSRNV----ISWNSVVAGCLAHGDLDAASAYF-ARAPRRNVAS----WNAMLAGLVR 113

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
            G++ +A  L  +MP +     + T++    + +R ++A   A  +F+  P      +  
Sbjct: 114 LGRMDDAWALFGEMP-QRNVVSYTTMVDG--LARRGEVAR--AREVFDAMPERNLVSWAA 168

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVV 434
           +   Y     +D+  ++  +M + NVV
Sbjct: 169 MITGYVENAMFDEARKLFEAMPDKNVV 195


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/560 (39%), Positives = 321/560 (57%), Gaps = 23/560 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +F     P+V  Y  ++    ++S + + A   + R+  +     N +++  +    
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDG-FVSSGNYLEAIQLYSRMLHESILPDNYLMASIL---- 154

Query: 86  MAKARDLFLAMPEKNSVSWSAMISG--------------YIECGQLDKAVELFKVAPVKS 131
             KA    LA+ E   V   A+  G              Y +CG+L  A  +F+  P + 
Sbjct: 155 --KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP-ED 211

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           VVA T MIS Y   G V+ A  +F  +  K+ V W AMI G+V N      L+  R M G
Sbjct: 212 VVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 271

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +RPN  ++  VL  CS L +L++G+ VH  + K  +  +      LI+MY +CG +++
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F E++ +DV+T+N MISG + +GK  +A+ LF  M    ++P ++TFV +L AC+H
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 391

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLVD G + F SM  DY +  + +HY CMVDLLGR G+L EA DLI+ M   P   + G
Sbjct: 392 GGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 451

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           TLLSAC++HK L+L E  A  L +   A+ +G YV L+++YA+  KW + A++R  MKE 
Sbjct: 452 TLLSACKMHKNLELGEQVAKELEDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEA 510

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K PG S IEV   +HEF  GD  HP+   I+EKL+EL + ++L GY P+ E  L  +
Sbjct: 511 GMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDI 570

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +  KE  L  HSE+LAI +GLI     T IRV KNLRVC DCH A K I+ I +R+I+V
Sbjct: 571 EDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVV 630

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFH+F++G CSCGDYW
Sbjct: 631 RDRNRFHYFENGACSCGDYW 650



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 156/352 (44%), Gaps = 51/352 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD--VVAAFDFFQRLPIKDTASWNTMIS 78
           G+L DA+ +F+++P+ DVV+  +M+S     SD   V  A   F R+  KDT  W  MI 
Sbjct: 196 GELGDARRVFEEMPE-DVVASTVMISSY---SDQGLVEEAGAVFSRVRRKDTVCWTAMID 251

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVE--------LFKVAPV 129
           GFV+ +   +A + F  M  +N       I   +  C QL  A+E        + K    
Sbjct: 252 GFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG-ALEIGRWVHSYMRKFEIE 310

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
            ++    A+I+ Y + G +D A+ +FDEM  ++++T+N MI+G   N  +   ++L R+M
Sbjct: 311 LNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVM 370

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +G  +RP   +   VL  CSH   +  G +    +F S + +D   + P I  Y      
Sbjct: 371 VGRRLRPTNVTFVGVLNACSHGGLVDFGFE----IFHS-MARDYR-VEPQIEHY------ 418

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
                               M+    + G+ E+A  L   MK   M PD I    LL AC
Sbjct: 419 ------------------GCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSAC 457

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
                ++LG Q    +  D G  A    Y  +  +   +GK  EA  +  KM
Sbjct: 458 KMHKNLELGEQVAKEL-EDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKM 507



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 129/286 (45%), Gaps = 36/286 (12%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +D A ++F      N+  + A+I G+V +    + ++L   M+   I P+   ++S+L  
Sbjct: 97  IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--------- 258
           C    +L+ G++VH    K     +      ++ +Y KCG+L DA ++F E         
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216

Query: 259 ---------------------IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
                                ++RKD V W AMI G+ ++ +  +AL  F  M+ E ++P
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 276

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           +  T V +L AC+  G +++G ++  S +  + I         ++++  R G + EA  +
Sbjct: 277 NEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 335

Query: 358 IKKMPFKPQPAI-FGTLLSACRVH--KRLDLAEFAAMNLFNLNPAN 400
             +M  K +  I + T++S   ++   R  +  F  M    L P N
Sbjct: 336 FDEM--KDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN 379



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  + ++   +D   +  L+    KC  ++ A ++F      +V  + A+I G+   G 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +A++L+ +M  E + PD+    ++L AC     +  G +   S     G ++      
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE-VHSRALKLGFSSNRLVRL 186

Query: 340 CMVDLLGRAGKLVEAVDLIKKMP 362
            +++L G+ G+L +A  + ++MP
Sbjct: 187 RIMELYGKCGELGDARRVFEEMP 209


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 291/470 (61%), Gaps = 6/470 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAP-VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +A++  Y   G +     +F   P V+ V+ W  +++GY++ G + +A ++FDEMP ++ 
Sbjct: 185 NALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDE 244

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           ++W+ ++ GYV+    E  L + R M+  G+RPN +++ + L   + L  L+ GK VH +
Sbjct: 245 ISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNV 304

Query: 224 VFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
           V +S  P+C +  A   L+ MY KCG +  A ++F  ++R+DV  WNAMI G A HG G 
Sbjct: 305 VQRSGMPVCMNVGA--ALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGR 362

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
            A+ LF++   EG+ P ++TFV +L  C+ +GLV  G +YF  +V  Y I  + +HY CM
Sbjct: 363 DAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCM 422

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           VDLLGRAG + EA++LI+ M   P P ++GT+LS+C+ H  +DL       L  L+P + 
Sbjct: 423 VDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTH- 481

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 461
           +G YV L+ IYA   KWD+V  +R  M      K  G+S +E    VH+F  GD  H + 
Sbjct: 482 SGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDS 541

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
           V I++ L  + KR+  AGYVPD+   LH +GEE K   +  HSE+LAIA+G I +  G+P
Sbjct: 542 VQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSP 601

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IR+ KNLRVCGDCH  +K ++ + +REIIVRD +RFHH K+G CSC DYW
Sbjct: 602 IRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 33/178 (18%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGY 274
           LG  VH L  K+    D      L+  Y   GD+    ++F E+ R +DV+TWN +++GY
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223

Query: 275 AQHG-------------------------------KGEKALRLFDKMKDEGMKPDSITFV 303
            + G                               + E AL +F  M ++G++P+    V
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             L A    GL++ G ++  ++V   G+    +    +VD+  + G +  A ++   M
Sbjct: 284 TALSAAARLGLLEHG-KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGM 340


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 337/617 (54%), Gaps = 48/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M+ K  V +N+++ G +K+ G    A +LF  + +  + + +   S IL           
Sbjct: 196 MHDKDAVTYNAMMMGCSKE-GLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLL 254

Query: 50  --------LNSDDVVAAF------DF-------------FQRLPIKDTASWNTMISGFVQ 82
                   L S  V+  F      DF             F  +P +D  S+N +I+ +  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 83  KKNMAKARDLFLAMP----EKNSVSWSAMIS--GYIECGQLDKAV--ELFKVAPVKSVVA 134
            +  A    LF  M     ++  + ++ M+S  G +    + K +  +L  +      + 
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A+I  Y K G +D A+  F     K+ ++W A+I GYV+N   E+ L+L   M   G+
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 434

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           RP+ ++ SS++   S L+ + LG+Q+H  + +S       + + L+ MY KCG L++A +
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F E+  ++ ++WNA+IS YA +G+ + A+++F+ M   G  PDS+TF+++L AC+H GL
Sbjct: 495 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 554

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            D  ++YF  M + Y I+   +HY C++D LGR G   +   ++ +MPFK  P I+ ++L
Sbjct: 555 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            +CR+H   +LA  AA  LF + P +A   YV L+NIYA   +W+D A ++  M++  V 
Sbjct: 615 HSCRIHGNQELARVAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVR 673

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K  GYSW+E+   ++ F S D   P +  I ++L  L K M   GY PD+  ALH V  E
Sbjct: 674 KESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHE 733

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           +K + L +HSE+LAIAF L+  P GTPIR+ KNL  C DCH   K IS I  R+IIVRD+
Sbjct: 734 LKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDS 793

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHFKDG CSCGDYW
Sbjct: 794 RRFHHFKDGVCSCGDYW 810



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 180/400 (45%), Gaps = 43/400 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +    W  ++   A   G+  DA  LF  +    V+   + ++ +L      V +   F 
Sbjct: 103 RNATTWTIMMRAHAAA-GRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFA 161

Query: 64  RLPIKDTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                DT  +  NT++  + +   +A AR +FL M +K++V+++AM+ G  + G   +A+
Sbjct: 162 IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 122 ELF---------------------------------------KVAPVKSVVAWTAMISGY 142
           +LF                                       +   V +V    +++  Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
            K   +D   +LFDEMP ++ V++N +IA Y  N  A   L+L R M  LG        +
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L     L  + +GKQ+H  +    L  +      LI MY KCG L+ A   F     K
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEK 401

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
             ++W A+I+GY Q+G+ E+AL+LF  M+  G++PD  TF +++ A +   ++ LG Q  
Sbjct: 402 SAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             ++   G  +     + +VD+  + G L EA+    +MP
Sbjct: 462 SYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 500



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 157/350 (44%), Gaps = 36/350 (10%)

Query: 37  DVVSYNIMLSC-ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           DV++Y + L    LL+S  +  A   F ++P K+  S N ++S +    ++  A+ LFL+
Sbjct: 40  DVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLS 99

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVAW-------------- 135
            P +N+ +W+ M+  +   G+   A+ LF+      V P +  V                
Sbjct: 100 SPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHP 159

Query: 136 --------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
                           ++  Y K G +  A ++F EM  K+ VT+NAM+ G  +      
Sbjct: 160 FAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQ 219

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+L   M   GI     + SS+L   + ++ L LG QVH LV +S    +      L+ 
Sbjct: 220 ALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD 279

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y KC  L+D  +LF E+  +D V++N +I+ YA +      LRLF +M+  G     + 
Sbjct: 280 FYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP 339

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
           +  +L        V +G Q    +V   G+A++      ++D+  + G L
Sbjct: 340 YATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGML 388


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 286/442 (64%), Gaps = 3/442 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   T ++  Y +FG VD A  +F+ MP +N+V+W+AMIA Y +N  A + L+  R M+ 
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMT 276

Query: 192 --LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                 PN+ ++ SVL  C+ L++L+ G+ +H  + +  L      ++ L++MY +CG L
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +   ++F  +  +DVV+WN++IS Y  HG G KA+++F++M   G  P  +TFV++L AC
Sbjct: 337 DVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H GLV+ G + F+SM  D+GI  + +HY CMVDLLGRA +L EA  +++ M  +P P +
Sbjct: 397 SHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G+LL +CR+H  ++LAE A+  LF L P N AG YV LA+IYA  + WD+V R++  ++
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVKKLLE 515

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
              + K+PG  W+EV   ++ F S D  +P +  IH  L +L + MK  GY+P  +  L+
Sbjct: 516 HRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLY 575

Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
            +  E KE+++L HSEKLA+AFGLI    G PIR+ KNLR+C DCH  TK+IS   ++EI
Sbjct: 576 ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEI 635

Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
           +VRD  RFH FK+G CSCGDYW
Sbjct: 636 LVRDVNRFHRFKNGVCSCGDYW 657



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 13/225 (5%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +I  Y   G VD A K+FD+   + +  WNA+          E+ L L   M  +G+ 
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175

Query: 196 PNASSLSSVLLGC-------SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
            +  + + VL  C        HL+    GK++H  + +         +T L+ MY + G 
Sbjct: 176 SDRFTYTYVLKACVASECTADHLTK---GKEIHAHLTRRGYNSHVYIMTTLVDMYARFGC 232

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKPDSITFVALL 306
           ++ A  +F  +  ++VV+W+AMI+ YA++GK  +ALR F +M  E     P+S+T V++L
Sbjct: 233 VDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVL 292

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            AC     ++ G +     +   G+ +     + +V + GR GKL
Sbjct: 293 QACASLAALEQG-RLIHGYILRRGLDSILPVISALVTMYGRCGKL 336



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +   ++L C H SSL  G +VH+ +  +   +D    T LI MY   G ++ A K+
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           F + +++ +  WNA+       G GE+ L L+ KM   G++ D  T+  +L AC
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 56/287 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+W++++A +AK  GK  +A   F +           M++    +S + V    
Sbjct: 243 MPVRNVVSWSAMIACYAKN-GKAFEALRTFRE-----------MMTETKDSSPNSVTMVS 290

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q            +I G++ ++ +    D  L +        SA+++ Y  CG+LD  
Sbjct: 291 VLQACASLAALEQGRLIHGYILRRGL----DSILPV-------ISALVTMYGRCGKLDVG 339

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     + VV+W ++IS Y   G    A ++F+E                       
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEE----------------------- 376

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPL 239
                   M+  G  P   +  SVL  CSH   ++ GK++ + +++    K        +
Sbjct: 377 --------MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACM 428

Query: 240 ISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
           + +  +   L++A K+  +++ +     W +++     HG  E A R
Sbjct: 429 VDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAER 475


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 332/613 (54%), Gaps = 48/613 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-QPDVVSYNIMLSCI----LLNSDDVVAA 58
           ++  +WN+++A +A Q G  ++A  L++ +  +P V ++  +LS      LL+    + A
Sbjct: 187 RSVSSWNAMIAAYA-QSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHA 245

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                R    D +  N +++ + + K +  A  +F  +P ++ VSWSAMI+ + E    D
Sbjct: 246 L-ISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFD 304

Query: 119 KAVELFKVAPVKSV---------------------------------------VAWTAMI 139
           +A+E +    ++ V                                       V  TA++
Sbjct: 305 EAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALV 364

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y  +G +D A  LFD++  ++   W  +I GY +       L+L R M      P   
Sbjct: 365 DLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATK 424

Query: 200 SL-SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            + S V+  C+ L +    +Q H  +    +  D    T L++MY + G+LE A ++F +
Sbjct: 425 IIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDK 484

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  +D + W  +I+GYA+HG+   AL L+ +M+ EG +P  +TF+ +L AC+HAGL + G
Sbjct: 485 MSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQG 544

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            Q F S+ +DY +     HY+C++DLL RAG+L +A +LI  MP +P    + +LL A R
Sbjct: 545 KQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASR 604

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +HK +  A  AA  +  L+P + A  YV L+N++A       +A +R +M    V K  G
Sbjct: 605 IHKDVKRATHAAGQITKLDPVDPAS-YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRG 663

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 498
            SWIEV   +HEF  GD  HP    I  +L+ L  ++K AGYVP+ E  LH VGE+ KE 
Sbjct: 664 SSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKEL 723

Query: 499 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 558
           LL  HSEKLAIAFGLI    GT +R+F  LR+C DCH A K+ISAI +REIIVRD++RFH
Sbjct: 724 LLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFH 783

Query: 559 HFKDGTCSCGDYW 571
            F+DG CSCGDYW
Sbjct: 784 KFRDGQCSCGDYW 796



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 189/362 (52%), Gaps = 21/362 (5%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKDTASW 73
           +Q   L+  +++ D+I      S N+ L   ++ +      V +A   F  +  K+  SW
Sbjct: 35  RQCQDLESVRQIHDRIS--GAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSW 92

Query: 74  NTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISG--YIECGQLDKAVELFKVAPVK 130
            +M++ + Q  +   A DL+  M  + N V ++ ++     IE  +  KA+   +++  K
Sbjct: 93  GSMLTAYAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIEALEEGKAIH-SRISGTK 151

Query: 131 S----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT-WNAMIAGYVENSWAEDGLKL 185
                V+   ++++ Y K G ++ A++LF+ M  +  V+ WNAMIA Y ++   E+ ++L
Sbjct: 152 GLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRL 211

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M    + P+  + +SVL  CS+L  L  G+++H L+       D +    L++MY +
Sbjct: 212 YEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYAR 268

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           C  L+DA K+F  + R+DVV+W+AMI+ +A+    ++A+  + KM+ EG++P+  TF ++
Sbjct: 269 CKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASV 328

Query: 306 LLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           LLAC   G +  G    D ++ N Y I     + T +VDL    G L EA  L  ++  +
Sbjct: 329 LLACASVGDLRAGRAVHDQILGNGYKITLV--NGTALVDLYTSYGSLDEARSLFDQIENR 386

Query: 365 PQ 366
            +
Sbjct: 387 DE 388


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/440 (45%), Positives = 273/440 (62%), Gaps = 13/440 (2%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   ++M+  Y K G++  A K+FDEMP +N+V+W+ MI GY +    E+ L+L +  + 
Sbjct: 45  VFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALI 104

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +  N  + SSV+  C + + L+LGKQ+H L  K+     +   + LIS+Y KCG +ED
Sbjct: 105 EDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIED 164

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F EI  +++  WNAM+   AQH   EKA  LF +M+  GMKP+ ITF+ +L AC+H
Sbjct: 165 AYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSH 224

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AGLV+ G  YF+ M  +YGI     HY  MVDLLGRAGKL +AV +IKKMP +P  +++G
Sbjct: 225 AGLVEKGQFYFELM-KEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWG 283

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL+ CR+H   +LA F A  +F L P ++A              ++++ AR R  +++ 
Sbjct: 284 ALLTGCRIHGDTELASFVADRVFELGPVSSAA------------GRYEEAARARKMLRDQ 331

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            V K  G SW+E G  +H F +GDR HP    I++KL+EL + M+ AGY+ D  F L  V
Sbjct: 332 GVKKETGLSWVEEGNRIHTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEV 391

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
             E K Q + +HSE+LAIAFGLI  P   PIRV KNLRVCGDCH A K++S    R IIV
Sbjct: 392 DGEEKNQTIRYHSERLAIAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIV 451

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFH F+DG CSC DYW
Sbjct: 452 RDNNRFHRFEDGNCSCRDYW 471



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 40/261 (15%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK--- 130
           ++M+  + +   +  AR +F  MP++N VSWS MI GY + G+ ++A+ LFK A ++   
Sbjct: 49  SSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLD 108

Query: 131 ------------------------------------SVVAWTAMISGYMKFGKVDLAEKL 154
                                               S    +++IS Y K G ++ A  +
Sbjct: 109 VNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLV 168

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F E+P +NL  WNAM+    +++  E    L + M G+G++PN  +   VL  CSH   +
Sbjct: 169 FHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLV 228

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMISG 273
           + G+   +L+ +  +         ++ +  + G L+DA  +  ++  +   + W A+++G
Sbjct: 229 EKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTG 288

Query: 274 YAQHGKGEKALRLFDKMKDEG 294
              HG  E A  + D++ + G
Sbjct: 289 CRIHGDTELASFVADRVFELG 309



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 14/204 (6%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G+RP+     S    C  LS   +G+ VH    K+    D    + ++ MY KCG+
Sbjct: 1   MLDNGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGE 60

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           + DA K+F E+  ++VV+W+ MI GY+Q G+ E+ALRLF +   E +  +  TF +++  
Sbjct: 61  IGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRV 120

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKMP 362
           C ++ L++LG Q        +G+  K  +       + ++ L  + G + +A  +  ++P
Sbjct: 121 CGNSTLLELGKQI-------HGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIP 173

Query: 363 FKPQPAIFGTLLSACRVHKRLDLA 386
            +    ++  +L AC  H   + A
Sbjct: 174 IR-NLGMWNAMLIACAQHAHTEKA 196


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 342/616 (55%), Gaps = 48/616 (7%)

Query: 3   VKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQ-PDVVSY-NIMLSCILLNSDDV-- 55
           V   + WNS+L  F      R  L+   E+ ++    PD  ++ +++  C LL    V  
Sbjct: 40  VLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGK 99

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           V      + +   D     T+++ +    ++  AR LF  M  +N V W++MISGY++  
Sbjct: 100 VLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159

Query: 116 QLDKAVELFK--------------------VAPVKSV-------------------VAWT 136
             ++A+ L+K                     A +K +                   V  +
Sbjct: 160 CPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS 219

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG-LGIR 195
           A+++ Y K G +  A ++FD++  K++  W+A+I GYV+N+ + + L+L R + G   +R
Sbjct: 220 ALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMR 279

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  ++ +V+  C+ L  L+ G+ VH  + ++      +    LI M+ KCGD++ A ++
Sbjct: 280 PNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRI 339

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  KD+++WN+M++G A HG G +AL  F  M+   ++PD ITF+ +L AC+HAGLV
Sbjct: 340 FDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLV 399

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G + F  +   YG+  K +HY CMVDLL RAG L EA + I+ MP +P  AI+G++L 
Sbjct: 400 QEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLG 459

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACRV+  L+L E AA  L  L P N  G Y+ L+NIYA  K W++V ++R  M E  + K
Sbjct: 460 ACRVYNNLELGEEAARCLLELEPTN-DGVYILLSNIYARRKMWNEVKKVRELMNEKGIQK 518

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG S + +  + H F +GD  HPE+  I   L+++ +++KL GYV D    L  + +  
Sbjct: 519 TPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNK 578

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE+ +  HSEKLA+ +GL+K  +G  I + KNLRVC DCH   K +S I +R+I +RD  
Sbjct: 579 KEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRN 638

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHFKDG+CSC DYW
Sbjct: 639 RFHHFKDGSCSCRDYW 654



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 187/383 (48%), Gaps = 37/383 (9%)

Query: 40  SYNIMLSCIL-LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE 98
           S N +++ +L + S  V  A+  F    + D  +WN+M+  FV      +A   +  M E
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 99  K-----NSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAW---------TAMISGY 142
           +     +  ++ +++ G   C  L +    FKV  V    VV +         T +++ Y
Sbjct: 72  RSRNVPDRFTFPSLLKG---CALLLE----FKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
              G +  A  LF+ M  +N V W +MI+GY++N    + L L + M   G  P+  +++
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           +++  C+ L  L +G ++H  + +  +       + L++MY KCGDL+ A ++F ++  K
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDK 244

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           DV  W+A+I GY ++ +  +AL+LF ++     M+P+ +T +A++ AC   G ++ G   
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG--- 301

Query: 322 FDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
               V+DY    +  H       ++D+  + G +  A  +   M +K   + + ++++  
Sbjct: 302 --RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGL 358

Query: 378 RVH--KRLDLAEFAAMNLFNLNP 398
            +H   R  LA+F  M   +L P
Sbjct: 359 ALHGLGREALAQFHLMQTTDLQP 381


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/477 (40%), Positives = 301/477 (63%), Gaps = 3/477 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WNS++AG     G L  A   F   P+ +V ++N ML+  L+    VV A  
Sbjct: 75  MPSRDVVSWNSIIAGCLAH-GDLDAASAYFAGAPERNVATWNAMLAG-LVRLGRVVDAQR 132

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  S+ TM+    ++  + +AR++F +MP++N VSW+AMISG +E G   +A
Sbjct: 133 LFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEA 192

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            ELF+  P K+VVA TAMI+G+ K G VD A +LFD +  K++++WNAMIAGYV N   E
Sbjct: 193 RELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGE 252

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + ++L  +M   G++P+ ++L +VL  CS L+ L+ GK  H +  K+ L    +    L+
Sbjct: 253 EAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALM 312

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           +MY KCG++ ++  +F+ ++ KD+V+WN +I+ YAQHGK +K + LF +M+  G+ PD I
Sbjct: 313 TMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDI 372

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+++L AC H G+VD  ++ FD M + Y I+ + +HY C+VD+L RAG+L +A   IK 
Sbjct: 373 TFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKH 432

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP K +  ++G+LL AC++H  + L E AA  L   + + ++G YV L+NIYAA   W  
Sbjct: 433 MPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQ-SDSQSSGPYVILSNIYAAAGMWGQ 491

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           V +IR  MKE  V K PGYSW E+G  VH F  GD  HPE+  I  +L+++   M++
Sbjct: 492 VNQIRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHMRM 548



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 53/244 (21%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           IS   + G V  A ++FD M  +++V+WNA++       W                    
Sbjct: 22  ISALARAGDVAAARRVFDAMTHRDVVSWNALLTAL----WRA------------------ 59

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
                   G  HL + +      +L  ++   +D  +   +I+     GDL+ A   F  
Sbjct: 60  --------GRHHLPAAR------RLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAG 105

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
              ++V TWNAM++G  + G+   A RLFD+M +  +    +++  ++      G V+  
Sbjct: 106 APERNVATWNAMLAGLVRLGRVVDAQRLFDEMPERNV----VSYTTMVDWLARRGEVERA 161

Query: 319 IQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            + FDSM         PD     +  M+      G  VEA +L + MP K   A    + 
Sbjct: 162 REVFDSM---------PDRNLVSWAAMISGCVENGMFVEARELFEAMPEKNVVACTAMIT 212

Query: 375 SACR 378
             C+
Sbjct: 213 GHCK 216


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 313/572 (54%), Gaps = 12/572 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFFQRLPI 67
           S L   A   G L+  Q +   I +    S N++   L  + + S  V      F+ +  
Sbjct: 156 SSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN 215

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQL-----DKAV 121
            D  SWN ++SGF   +   +   +F  M  E    +    IS    C  L      K V
Sbjct: 216 PDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQV 275

Query: 122 E--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
              + K +        TA++  Y K   ++ A   FD +  +++ +W  +I+GY +   A
Sbjct: 276 HAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQA 335

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           E  +K  R M   GI+PN  +L+S L GCSH+++L+ G+Q+H +  K+    D    + L
Sbjct: 336 EKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSAL 395

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           + +Y KCG +E A  +F  +  +D+V+WN +ISGY+QHG+GEKAL  F  M  EG+ PD 
Sbjct: 396 VDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDE 455

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            TF+ +L AC+  GLV+ G + FDSM   YGI    +HY CMVD+LGRAGK  E    I+
Sbjct: 456 ATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIE 515

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
           +M   P   I+ T+L AC++H  +D  E AA  LF + P   +  Y+ L+NI+A+  +WD
Sbjct: 516 EMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSS-YILLSNIFASKGRWD 574

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           DV  IR  M    + K PG SW+EV   VH F S D  HP++  I+ KL +L + +   G
Sbjct: 575 DVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIG 634

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
           YVP  E  LH V  + K + L +HSE+LA++F L+      PIR+FKNLR+C DCH   K
Sbjct: 635 YVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMK 694

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            IS I  +EI+VRD  RFHHFK GTCSC D W
Sbjct: 695 LISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 183/413 (44%), Gaps = 60/413 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD------ 54
           M  K  V+WN++L G+A Q G  K   +LF K+ + +       LS +L    +      
Sbjct: 11  MPEKNGVSWNALLNGYA-QLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLRE 69

Query: 55  --------------------------------VVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                           V  A   F ++   D  +W+ MI+G  Q
Sbjct: 70  GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQ 129

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVA 134
           + +  +A +LF  M  K    N  + S+++S     G L     +     K       + 
Sbjct: 130 QGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLV 189

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
              +I  YMK   V+   K+F+ M   +LV+WNA+++G+ ++     G ++   M+  G 
Sbjct: 190 SNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGF 249

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +PN  +  SVL  CS L   + GKQVH  + K+    D    T L+ MY K   LEDA  
Sbjct: 250 KPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGV 309

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F  +  +D+ +W  +ISGYAQ  + EKA++ F +M+ EG+KP+  T  + L  C+H   
Sbjct: 310 AFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMAT 369

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKM 361
           ++ G Q        + +A K  H+      + +VDL G+ G +  A  + K +
Sbjct: 370 LENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL 415



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 44/310 (14%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---KVAPVK------------ 130
           M  A  LF  MPEKN VSW+A+++GY + G   K ++LF   K    K            
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 131 ----------SVVAWTAMISG--------------YMKFGKVDLAEKLFDEMPTKNLVTW 166
                      V+   A+ SG              Y K G V  A K+F ++   ++V W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           +AMI G  +    ++  +L  +M   G RPN  +LSS++   +++  L+ G+ +H  + K
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D     PLI MY K   +ED  K+F  +   D+V+WNA++SG+       +  R+
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDL 344
           F +M  EG KP+  TF+++L +C+     + G Q    ++ +   ++  D +  T +VD+
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN---SSDDDDFVGTALVDM 297

Query: 345 LGRAGKLVEA 354
             +A  L +A
Sbjct: 298 YAKARCLEDA 307


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 325/586 (55%), Gaps = 21/586 (3%)

Query: 2   NVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDD 54
           NV T   WN+VL+G ++    R  L     +  +  +PD  + + +L  +    LL    
Sbjct: 238 NVAT---WNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 294

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  F F +     D  +   ++  + +   +  A+ +F A+  +N  +W+++++GY   
Sbjct: 295 EIHCF-FLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANA 353

Query: 115 GQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTW 166
           G+ D A+EL ++         +  W  +I+GY   G+   A  L  ++     T N+V+W
Sbjct: 354 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 413

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+G   N   ED       M   G++P+  ++S +L  C+ L+  + GK++H    +
Sbjct: 414 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 473

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T LI MY K G L  A  +F  IQ+K++V  NAM++G A HG+G +A+ L
Sbjct: 474 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 533

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M + G+KPDSITF ALL AC   GLV  G +YFD M   YG+    ++Y CMVDLL 
Sbjct: 534 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLA 593

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R G L EA+D I++ P  P  + +G LL+ C +H  L LAE AA NLF L P N+A  Y+
Sbjct: 594 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSAN-YL 652

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            + N+Y   + +D+   ++ +MK   V   PG+SWI++   +H F    + HPE   I+E
Sbjct: 653 LMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYE 712

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRVF 525
           +L  L  ++K AGYVPD     + V EE KE+LLL H+EKLAI +GLI+      P+RV 
Sbjct: 713 ELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVM 772

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KN R+C DCH   K+IS++  R+II+RD  RFHHF DG CSC DYW
Sbjct: 773 KNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 108/200 (54%), Gaps = 4/200 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD----LAEKLFDEMPTKNLVTW 166
           Y E   +  A  +       SVV W A+++   + G VD    LA ++    P  N+ TW
Sbjct: 183 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATW 242

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N +++G   +    + L ++  M+  G+RP+A+++SS+L   ++   L+ G ++H    +
Sbjct: 243 NTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLR 302

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + L  D    T L+ MY KCG L+ A K+F  ++ +++ TWN++++GYA  G+ + AL L
Sbjct: 303 NQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALEL 362

Query: 287 FDKMKDEGMKPDSITFVALL 306
            + MK   + PD  T+  L+
Sbjct: 363 VELMKKNRLDPDITTWNGLI 382



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 41/245 (16%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMP---TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A++    + G+     +L  E      K+ V WN  +A   E    ++ + + R M   G
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 194 I-RPNASSLSSVLLGCSHLSSLQLGKQVHQLV--FKSPLCK---DTTALT---------- 237
           + R    ++        H  +L+L    H LV  F + +     D  A T          
Sbjct: 152 VPRRRGRAV--------HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGS 203

Query: 238 -----PLISMYCKCGDLEDACKLFLEIQRK----DVVTWNAMISGYAQHGKGEKALRLFD 288
                 +++   + G ++DA +L   + R     +V TWN ++SG ++HG+  +AL +  
Sbjct: 204 VVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVA 263

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLG 346
            M  +G++PD+ T  +LL +  + GL+  G++     + +     +PD Y  T +VD+  
Sbjct: 264 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRN---QLEPDVYTGTALVDMYA 320

Query: 347 RAGKL 351
           + G+L
Sbjct: 321 KCGRL 325



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 27/217 (12%)

Query: 193 GIRP-NASSLSSVLLGCS--------HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           G+ P +A  L S+L  C+        H  + +L  Q+H L  ++ L +D      L+ + 
Sbjct: 38  GVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLL 97

Query: 244 CKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KP 297
            + G      +L  E      KD V WN  ++  A+  + ++A+ +F +M+  G+   + 
Sbjct: 98  ARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPRRRG 157

Query: 298 DSITFVALLLACNHAGLVD--LGIQYFD-------SMVNDYGIAAKPDHYTCMVDLLGRA 348
            ++   AL LA +   LV   L   Y +       + V D   A     +  +V    R 
Sbjct: 158 RAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARL 217

Query: 349 GKLVEAVDLIKKMPFK-PQP--AIFGTLLSACRVHKR 382
           G + +A++L  +M    P+P  A + T+LS C  H R
Sbjct: 218 GLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR 254


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 272/436 (62%), Gaps = 3/436 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +I  Y+ F  ++ A ++FD MP +  N V+WNAMIA YV+++   +   L   M    + 
Sbjct: 135 LIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV 194

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +    +S+L  C+ L +L+ GK +H  + KS +  D+   T +I MYCKCG LE A ++
Sbjct: 195 LDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEV 254

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E+ +K + +WN MI G A HGKGE A+ LF +M+ E + PD ITFV +L AC H+GLV
Sbjct: 255 FNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLV 314

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G  YF  M    G+    +H+ CMVDLLGRAG L EA  LI +MP  P   + G L+ 
Sbjct: 315 EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 374

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+H   +L E     +  L P N+ G YV LAN+YA+  +W+DVA++R  M +  V K
Sbjct: 375 ACRIHGNTELGEQIGKKVIELEPHNS-GRYVLLANLYASAGRWEDVAKVRKLMNDRGVKK 433

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            PG+S IE  + V EF +G R HP+   I+ KL E+ + ++  GYVPD +  LH + EE 
Sbjct: 434 APGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEE 493

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE  L +HSEKLAIAFGL+K   G  +R+ KNLR+C DCH+A+K IS +  REII+RD  
Sbjct: 494 KENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRN 553

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHF+ G CSC DYW
Sbjct: 554 RFHHFRMGGCSCKDYW 569



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 3/196 (1%)

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           +GY+    A + + +   M+   + PN  +   ++  C    +++ GKQ+H  V K    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFD 288
            D  +L  LI MY     LE A ++F  + ++D   V+WNAMI+ Y Q  +  +A  LFD
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M+ E +  D     ++L AC   G ++ G ++    +   GI       T ++D+  + 
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKC 245

Query: 349 GKLVEAVDLIKKMPFK 364
           G L +A ++  ++P K
Sbjct: 246 GCLEKASEVFNELPQK 261



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 59/317 (18%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK--NSVSWSAMISGYIECGQLDKAVELFKV 126
           D  S N +I  +V  +++ +AR +F  MP++  NSVSW+AMI+ Y++  +L +A  LF  
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187

Query: 127 APVKSVV----------------------AW-----------------TAMISGYMKFGK 147
             +++VV                       W                 T +I  Y K G 
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           ++ A ++F+E+P K + +WN MI G   +   E  ++L + M    + P+  +  +VL  
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQ 260
           C+H   ++ GK   Q +       +   L P       ++ +  + G LE+A KL  E+ 
Sbjct: 308 CAHSGLVEEGKHYFQYM------TEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMP 361

Query: 261 -RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLG 318
              D     A++     HG  E   ++  K+ +  ++P +S  +V L      AG  +  
Sbjct: 362 VNPDAGVLGALVGACRIHGNTELGEQIGKKVIE--LEPHNSGRYVLLANLYASAGRWE-D 418

Query: 319 IQYFDSMVNDYGIAAKP 335
           +     ++ND G+   P
Sbjct: 419 VAKVRKLMNDRGVKKAP 435


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/440 (45%), Positives = 270/440 (61%), Gaps = 5/440 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI- 194
           T++IS Y   G VD+A  LF  MP +N+++W+ MI GYV     ++ L L R M  LG+ 
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162

Query: 195 --RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
             RPN  ++S VL  C  L +L+ GK  H  + K  +  D    T LI MY KCG +E A
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKA 222

Query: 253 CKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
             +F  +   KDV+ W+AMISG A HG  E+ + LF KM ++G++P+++TF+A+  AC H
Sbjct: 223 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLV  G  Y   M  DY I     HY CMVDL GRAG++ EA +++K MP +P   ++G
Sbjct: 283 GGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWG 342

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LLS  R+H  ++  E A   L  L P N+ G YV L+N+YA   +W+DV  +R  M+  
Sbjct: 343 ALLSGSRMHGDIETCELALKKLIELEPTNS-GAYVLLSNVYAKRGRWEDVRHVRDLMETM 401

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K+PG S IEVG V+HEF  GD  HPE   IH  L+E+ +R+K+ GYV + +  L  +
Sbjct: 402 GIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDL 461

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE  L  HSEKLA+A+G +K   GTPIR+ KNLR+C DCH A K IS +  REIIV
Sbjct: 462 DEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIV 521

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHF  G CSC DYW
Sbjct: 522 RDCNRFHHFTQGLCSCRDYW 541



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 9/205 (4%)

Query: 159 PTKNLVTWNAMIAGYVENSWAEDG-----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           PT     WN +I  +V+      G     + +   M   G++P+  +   +L   +  S 
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L LG+ VH  + +  L  D    T LISMY   G ++ A  LF  +  ++V++W+ MI+G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 274 YAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           Y + G+ ++AL LF +M+  G   ++P+  T   +L AC   G ++ G ++  + ++  G
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCG 198

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAV 355
           +       T ++D+  + G + +A 
Sbjct: 199 MPVDVVLGTALIDMYAKCGSVEKAT 223



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 46/286 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPI 67
            + L       G +  A+ LF  +P+ +V+S++ M++  +      + +A F   Q L +
Sbjct: 102 QTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGV 161

Query: 68  KDTASWNTMISGFV---------QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            D       +SG +         +    A A      MP  + V  +A+I  Y +CG ++
Sbjct: 162 NDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMP-VDVVLGTALIDMYAKCGSVE 220

Query: 119 KAVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           KA  +F  + P K V+AW+AMISG    G                               
Sbjct: 221 KATWVFSNLGPNKDVMAWSAMISGLAMHG------------------------------- 249

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTAL 236
            AE+ + L   MI  G+RPNA +  +V   C H   +  GK  + ++     +       
Sbjct: 250 LAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHY 309

Query: 237 TPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 281
             ++ +Y + G +++A  +   +    DV+ W A++SG   HG  E
Sbjct: 310 GCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 355


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 320/577 (55%), Gaps = 38/577 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYN----------------IMLSCILLNSDDVVAAFDFFQR 64
           G+L  A  L  + P P  V Y                  +LS +LL+   +  A      
Sbjct: 76  GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSAS 135

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           LP     +    + G+  K          LA+  +  V+ +A++  Y   G    A  LF
Sbjct: 136 LPACGGLAVGRALHGYAVK----------LALSGEPYVA-TALLGMYARAGDAAAARVLF 184

Query: 125 K-VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
             + P   VV+ TAM++ Y K G +D A  LFD +P+K+L+ WNAM+ GY ++    + L
Sbjct: 185 DGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEAL 244

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK---DTTALTPLI 240
           +L R M+  G+ P+  S+   L   + L + + G+ +H  V  S   +   +    T LI
Sbjct: 245 RLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALI 304

Query: 241 SMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
            MY KCG LEDA  +F  L    +D+V WNAM++GYA HG   +AL  F +++ +G+ P 
Sbjct: 305 DMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPT 364

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            ITF+ +L AC+H+GLVD G + F SM  +YGI  K +HY CMVDLLGRAG++ EA +L+
Sbjct: 365 DITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELV 424

Query: 359 KKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           + M   KP   ++ +LL+ACR+HK ++L +  A +L     AN +G YV L+N+YAA   
Sbjct: 425 QSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLAN-SGTYVLLSNMYAAAGN 483

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W +V R+R  M+ + + K PG S +EVG  V EF +GDR HP    I+ KL+E+    + 
Sbjct: 484 WREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARA 543

Query: 478 AGYVPDLE---FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
            G+VP  E     L       KEQ L  HSEKLA+AFGLI  P GT I++ KNLR C DC
Sbjct: 544 RGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADC 603

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H   K +S +  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 604 HAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/619 (35%), Positives = 342/619 (55%), Gaps = 52/619 (8%)

Query: 4   KTTVNWNSVLAGFAKQR------GKLKDAQELFDKIPQPDVVSYNIMLSC---------- 47
           +  V+WN +L G+A+        G L++ Q     +P  ++   +++  C          
Sbjct: 232 RNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLR 291

Query: 48  ----------ILLNSDDV----VAAFD----------FFQRLPIKDTASWNTMISGFVQK 83
                     + L  D V    +AA+            F  +  K  +SWN +I    Q 
Sbjct: 292 ELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQN 351

Query: 84  KNMAKARDLFLAMPEK--NSVSWSAMISGYIECGQL-----DKAVELF--KVAPVKSVVA 134
              + A +LF  M         W ++ S  + CG L      KA   F  +    K    
Sbjct: 352 GEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFI 411

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-- 192
             +++S Y++ G+  LA  LFD +  K+ V+WN MIAGY +N    + L+L R M     
Sbjct: 412 RVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKG 471

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G  P+  + +S L+ CS L +++LGK++H    K+ LC+D+   + +I MY KCG ++DA
Sbjct: 472 GHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDA 531

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
              F  ++ KD V+W  MI+GYA +G+G++A+ L+DKM  EGM+PD  T++ LL+AC HA
Sbjct: 532 RVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHA 591

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           G+++ G+ +F  M N   I AK +HY C++ +L RAG+  +AV L++ MP +P   I  +
Sbjct: 592 GMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSS 651

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           +LSAC +H  ++L +  A  L  L P  A   YV  +N+YA  ++WD++ ++R  +++  
Sbjct: 652 VLSACHMHGEVELGKKVADKLLELEPHKAEH-YVLASNMYAGSRQWDEMRKVRKMLRDAG 710

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K PG SWI++   V+ F +G+   PE+  + +    LE++++ AGY PD    LH + 
Sbjct: 711 VAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELE 770

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE K + L +HSEK AIAFGL++    T +RVFKN+R+C DCH A K IS +  REI+VR
Sbjct: 771 EEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVR 830

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF+DG CSCGDYW
Sbjct: 831 DKKRFHHFRDGLCSCGDYW 849



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 22/217 (10%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM---IGL 192
            +++S Y + G+VD AEK+F+ M  +NLV+WNA++A   +      GL+L R     +G 
Sbjct: 103 NSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD---PRRGLELFRDCLEDLGG 159

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              P+ ++L +VL  C+ L+  + G+ VH L  KS           L+ MY KCG++ DA
Sbjct: 160 TAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADA 219

Query: 253 CKLFLEI---QRKDVVTWNAMISGYAQHGKGEKALRLFD--KMKDEGMKPDSITFVALLL 307
              FLE      ++VV+WN M+ GYA++G+   A  L    +M++ G+  D IT +++L 
Sbjct: 220 ECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLP 279

Query: 308 ACN-----------HAGLVDLGIQYFDSMVNDYGIAA 333
            C+           HA +V  G+     MV +  IAA
Sbjct: 280 VCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAA 316



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 66/326 (20%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------------LLNSDDVVA 57
           NS+++ + +  G++ DA+++F+ +   ++VS+N +++ +             L      A
Sbjct: 103 NSLVSMYGRC-GRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLEDLGGTA 161

Query: 58  AFD---FFQRLPIKDTASW---NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           A D       LP+    +W      + G   K         + A P  ++V    ++  Y
Sbjct: 162 APDEATLVTVLPMCAALAWPETGRAVHGLAVKSG-------WDAAPRVSNV----LVDMY 210

Query: 112 IECGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            +CG++  A   F  AP    ++VV+W  M+ GY + G+   A  L  EM          
Sbjct: 211 AKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREM---------- 260

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
                               M   G+  +  ++ SVL  CS L  L   +++H  V +  
Sbjct: 261 -------------------QMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRG 301

Query: 229 LCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           L   T  + P  LI+ Y +CG L  AC++F  I  K V +WNA+I  +AQ+G+   A+ L
Sbjct: 302 L-HLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIEL 360

Query: 287 FDKMKDE-GMKPDSITFVALLLACNH 311
           F +M +  G KPD  +  +LLLAC +
Sbjct: 361 FREMTNACGQKPDWFSIGSLLLACGN 386


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 328/571 (57%), Gaps = 11/571 (1%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDDVVAAFDFFQRL 65
           N++L  + K    L+DA  LFD++PQ D VS+  +L+      L N    +  + F    
Sbjct: 41  NTLLDAYGKC-NLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDR 99

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDL---FLAMP-EKNSVSWSAMISGYIECGQLDKAV 121
              D   + T++       ++   + +   F+  P   + V  S+++  Y +CG    A 
Sbjct: 100 LQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIAR 159

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            +F    VK+ V+WTAM+SGY + G  D A +LF   P +NL +W A+I+G V++ +  D
Sbjct: 160 SVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCID 219

Query: 182 GLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           G  +   M   G+   +   LSSV+  C++L+ L LGKQ+H LV  S           L+
Sbjct: 220 GCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALV 279

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KC D+  A  +F  +  +DVV+W ++I G AQHG+ ++AL L+D+M    +KP+ +
Sbjct: 280 DMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEV 339

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFV L+ AC+HAGLV  G + F +M+ DY I+     +TC +DLL R+G L EA DLIK 
Sbjct: 340 TFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKT 399

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP KP    +  LLSAC+ H   ++    A  L +LN  +    YV L+N+YA   KW+ 
Sbjct: 400 MPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLN-MHEPSTYVLLSNVYAGAGKWEQ 458

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           ++R+R  M +  V + PGYS I++G     F +G+  HP    I   LKEL+  M+  GY
Sbjct: 459 MSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGY 518

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           +PD  + LH + E+ KE+ L +HSE+ A+A+GL+K   GT IR+ KNLR+CGDCH   K 
Sbjct: 519 IPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKL 578

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            S+I  +EIIVRD TR+HHFKDG CSC D+W
Sbjct: 579 TSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S L  + L   H + L   K++H  + KS L +       L+  Y KC  L+DA  LF E
Sbjct: 4   SYLHRLKLCTKHQAPLN-AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDE 62

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDL 317
           + ++D V+W ++++ Y Q     K L +F  M   + ++PD   +  LL AC     + L
Sbjct: 63  MPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRL 122

Query: 318 GIQ 320
           G Q
Sbjct: 123 GKQ 125


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 332/558 (59%), Gaps = 8/558 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G++ DA+ LFDK+   DVV++NIM+     N+  D V+  ++  +    + D     T++
Sbjct: 165 GRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVL 224

Query: 78  SGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S      N++  + +   + +      S   +++++ Y  CG +  A E++   P K +V
Sbjct: 225 SACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
             TAM+SGY K G V  A  +FD M  K+LV W+AMI+GY E+    + L+L   M    
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I P+  ++ SV+  C+++ +L   K +H    K+   +       LI MY KCG+L  A 
Sbjct: 345 IVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAR 404

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  + RK+V++W++MI+ +A HG  + A+ LF +MK++ ++P+ +TF+ +L AC+HAG
Sbjct: 405 EVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAG 464

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+ G ++F SM+N++ I+ + +HY CMVDL  RA  L +A++LI+ MPF P   I+G+L
Sbjct: 465 LVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSL 524

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           +SAC+ H  ++L EFAA  L  L P +  G  V L+NIYA  K+WDDV  +R  MK   V
Sbjct: 525 MSACQNHGEIELGEFAATRLLELEP-DHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGV 583

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K    S IEV   VH F   DR H +   I++KL  +  ++KL GY P     L  + E
Sbjct: 584 SKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEE 643

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E K++++L+HSEKLA+ +GLI     + IR+ KNLR+C DCH   K +S + + EI++RD
Sbjct: 644 EEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRD 703

Query: 554 TTRFHHFKDGTCSCGDYW 571
            TRFHHF  G CSC DYW
Sbjct: 704 RTRFHHFNGGICSCRDYW 721



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 174/383 (45%), Gaps = 44/383 (11%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A   F  +P   T   N ++  F +         L+L +       +  S+  ++    +
Sbjct: 68  ALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSK 127

Query: 114 CGQLDKAVELFKVAPV-----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
              L+  +E+  +A             +A+I+ Y   G++  A  LFD+M  +++VTWN 
Sbjct: 128 LSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNI 187

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI GY +N+  +  LKL   M   G  P+A  L +VL  C+H  +L  GK +HQ +  + 
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNG 247

Query: 229 LCKDTTALTPLISMYCKCGDL-------------------------------EDACKLFL 257
               +   T L++MY  CG +                               +DA  +F 
Sbjct: 248 FRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFD 307

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  KD+V W+AMISGYA+  +  +AL+LF++M+   + PD IT ++++ AC + G + +
Sbjct: 308 RMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGAL-V 366

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
             ++  +  +  G          ++D+  + G LV+A ++ + MP K     + ++++A 
Sbjct: 367 QAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-NVISWSSMINAF 425

Query: 378 RVHKRLD--LAEFAAMNLFNLNP 398
            +H   D  +A F  M   N+ P
Sbjct: 426 AMHGDADSAIALFHRMKEQNIEP 448



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 2/218 (0%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           +D A  LF  +P       N ++  +      E+ L L   +   G   +  S   +L  
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            S LS+L LG ++H L  K      D    + LI+MY  CG + DA  LF ++  +DVVT
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WN MI GY+Q+   +  L+L+++MK  G +PD+I    +L AC HAG +  G +     +
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG-KAIHQFI 243

Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            D G        T +V++    G +  A ++  ++P K
Sbjct: 244 KDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSK 281



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 19/194 (9%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T+  N+ L     + G L  A+E+F+ +P+ +V+S++ M++   ++  D  +A   F R+
Sbjct: 383 TLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHG-DADSAIALFHRM 441

Query: 66  PIKDTASWNTMISGFVQKKNMA----KARDLFLAMPEKNSVS-----WSAMISGYIECGQ 116
             ++         G +   + A    + +  F +M  ++ +S     +  M+  Y     
Sbjct: 442 KEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANH 501

Query: 117 LDKAVELFKVAPV-KSVVAWTAMISGYMKFGKVDLAE----KLFDEMPTKN--LVTWNAM 169
           L KA+EL +  P   +V+ W +++S     G+++L E    +L +  P  +  LV  + +
Sbjct: 502 LRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNI 561

Query: 170 IAGYVENSWAEDGL 183
            A   E  W + GL
Sbjct: 562 YAK--EKRWDDVGL 573


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/582 (37%), Positives = 329/582 (56%), Gaps = 22/582 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLN--SDDVVAAFDFFQRL 65
           ++ L  F    G    A+++FD+IP    D V +  ++ C + +  SD+ +  F   +R 
Sbjct: 53  HNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRC 112

Query: 66  PIK-DTASWNTMISGFVQKKNM---AKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKA 120
            +K D  +   +  G  +  ++   A+     + M       + +A++  Y + G + +A
Sbjct: 113 GVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEA 172

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F     +SVV+WT ++ G ++   V     +FDEMP +N V W  MIAGY+++   +
Sbjct: 173 RRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQ 232

Query: 181 DGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTP 238
           +   L+R MI  L +  N  +L S+L  CS    L +G+ VH    K+   + +    T 
Sbjct: 233 ESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTA 292

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           ++ MY KCG +  A K F ++ +++VV+WNAM+SG A HG G  AL +F +M  E  KPD
Sbjct: 293 MVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPD 351

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +TF ++L AC+H+GLVD G  YF ++ + YGI  K +HY CMVDLLGRAG+L EA  L+
Sbjct: 352 DVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILV 411

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           ++MP +P   + G+LL +C +H +L L E     L  L+P N    ++ L+N+YA   K 
Sbjct: 412 REMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTE-YHILLSNMYALAGKQ 470

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
           +    +R  +K+  + K+PG S I VG  VH+F +GD+ HP    ++  L E+  R++LA
Sbjct: 471 NRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLA 530

Query: 479 GYVPDLEFALHA---------VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           GY P+      A         V +E KEQ L  HSEKLAI FGLI    G P+ +FKNLR
Sbjct: 531 GYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLR 590

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +C DCH A K +S I  REI++RD  RFH FK+G+CSC DYW
Sbjct: 591 ICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 330/555 (59%), Gaps = 29/555 (5%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            G++ +  E+F+ +   DVVS+N ++  +  +   +  +   F           N M SG 
Sbjct: 533  GRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFS----------NMMKSGL 582

Query: 81   VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            V  K        FLA     SV         +E G+   +V + K    +      A++S
Sbjct: 583  VPNKVTFVN---FLAALTPLSV---------LELGKQIHSV-MLKHGVTEDNAVDNALMS 629

Query: 141  GYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K G VD  E+LF  M   ++ ++WN+MI+GY+ N   ++ +  + +M+      +  
Sbjct: 630  CYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHC 689

Query: 200  SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
            + S VL  C+ +++L+ G ++H    +S L  D    + L+ MY KCG ++ A K+F  +
Sbjct: 690  TFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSM 749

Query: 260  QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             +K+  +WN+MISGYA+HG G KAL +F++M++ G  PD +TFV++L AC+HAGLV+ G+
Sbjct: 750  SQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGL 809

Query: 320  QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
             YF+ ++ DYGI  + +HY+C++DLLGRAG+L +  + +K+MP KP   I+ T+L AC+ 
Sbjct: 810  DYFE-LMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQ 868

Query: 380  HK---RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
             K   ++DL   A+  L  L P N    YV  +  +AA+ +W+D A+ R +MK   V K 
Sbjct: 869  SKHRAKIDLGTEASRMLLELEPQNPVN-YVLSSKFHAAIGRWEDTAKARAAMKGAAVKKE 927

Query: 437  PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
             G SW+ +   VH F +GDR HP    I+EKL  L ++++ AGYVP  E+ LH + EE K
Sbjct: 928  AGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENK 987

Query: 497  EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
            E+LL +HSEKLA+AF L +   G PIR+ KNLRVCGDCH A +YIS I  R+II+RD+ R
Sbjct: 988  EELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIR 1047

Query: 557  FHHFKDGTCSCGDYW 571
            FHHFKDG CSCGDYW
Sbjct: 1048 FHHFKDGKCSCGDYW 1062



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 118/236 (50%), Gaps = 22/236 (9%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIR 195
           +++ Y K  ++D A ++FD MP +N V+W  +I+G+V +   ED   L R M+  G G R
Sbjct: 106 LVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCR 165

Query: 196 PNASSLSSVLLGCSHLSSLQLG--KQVHQLVFKSPLCKDTTALTPLISMY--CKCGDLED 251
           P + +  SVL  C      +LG   QVH LV K+    +TT    LISMY  C  G    
Sbjct: 166 PTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPIL 225

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK--DEG--MKPDSITFVALL- 306
           A ++F     +D++TWNA++S YA+ G       LF  M+  D G  ++P   TF +L+ 
Sbjct: 226 AQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLIT 285

Query: 307 ---LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDL 357
              L+    GL+D   Q F  ++         D Y  + +V    R G L EA D+
Sbjct: 286 ATYLSSCSLGLLD---QLFVRVLKS---GCSSDLYVGSALVSAFARHGMLDEAKDI 335



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/439 (19%), Positives = 177/439 (40%), Gaps = 90/439 (20%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD---------------- 69
           AQ +FD  P  D++++N ++S +     D +  F  F+ +   D                
Sbjct: 226 AQRVFDTTPVRDLITWNALMS-VYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLI 284

Query: 70  TASW----------------------------NTMISGFVQKKNMAKARDLFLAMPEKNS 101
           TA++                            + ++S F +   + +A+D++L + E+N+
Sbjct: 285 TATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNA 344

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAP--------------------------------- 128
           V+ + +I+G ++    + A E+F  A                                  
Sbjct: 345 VTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREV 404

Query: 129 ----------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
                      + +     +++ Y K G +D A ++F  M  ++ ++WN +I    +N +
Sbjct: 405 HAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGY 464

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E  +    +M    I P+  +  S L  C+ L  L  G+Q+H    K  L  DT+    
Sbjct: 465 CEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNA 524

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA-QHGKGEKALRLFDKMKDEGMKP 297
           L+ MY +CG + +  ++F  +   DVV+WN+++   A       +++++F  M   G+ P
Sbjct: 525 LVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVP 584

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           + +TFV  L A     +++LG Q    M+  +G+         ++    ++G +     L
Sbjct: 585 NKVTFVNFLAALTPLSVLELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERL 643

Query: 358 IKKMPFKPQPAIFGTLLSA 376
             +M  +     + +++S 
Sbjct: 644 FSRMSGRRDAISWNSMISG 662



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 53/298 (17%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV------- 126
           N +++ + +   +  AR +F  MP +N+VSW+ +ISG++  G  + A  LF+        
Sbjct: 104 NHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPG 163

Query: 127 --------------------------APVKSVVAWT----------AMIS--GYMKFGKV 148
                                       V  +V+ T          A+IS  G    G  
Sbjct: 164 CRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPP 223

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM----IGLGIRPNASSLSSV 204
            LA+++FD  P ++L+TWNA+++ Y +   A     L R M     G+ +RP   +  S 
Sbjct: 224 ILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGS- 282

Query: 205 LLGCSHLSSLQLG--KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           L+  ++LSS  LG   Q+   V KS    D    + L+S + + G L++A  ++L ++ +
Sbjct: 283 LITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKER 342

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           + VT N +I+G  +   GE A  +F   +D     +  T+V LL A       + G++
Sbjct: 343 NAVTLNGLIAGLVKQQHGEAAAEIFMGARDSA-AVNVDTYVVLLSAIAEFSTAEQGLR 399



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 86/371 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY--------------- 41
           M+    V+WNS++   A  +  + ++ ++F  + +    P+ V++               
Sbjct: 545 MSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLEL 604

Query: 42  --------------------NIMLSCILLNSDDVVAAFDFFQRLP-IKDTASWNTMISGF 80
                               N ++SC    S DV +    F R+   +D  SWN+MISG+
Sbjct: 605 GKQIHSVMLKHGVTEDNAVDNALMSC-YAKSGDVDSCERLFSRMSGRRDAISWNSMISGY 663

Query: 81  VQKKNMAKARDLFLAMPEKNSV----SWSAMISGYIECGQLDKAVEL----FKVAPVKSV 132
           +   ++ +A D    M     +    ++S +++       L++ +E+     +      V
Sbjct: 664 IYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDV 723

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V  +A++  Y K G++D A K+F  M  KN  +WN+MI+GY  +      L++   M   
Sbjct: 724 VVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQES 783

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G  P+  +  SVL  CSH   ++ G    +L+       +   + P I  Y    DL   
Sbjct: 784 GESPDHVTFVSVLSACSHAGLVERGLDYFELM-------EDYGILPRIEHYSCVIDLL-- 834

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
                                    G+  +  ++ + MK   MKP+++ +  +L+AC   
Sbjct: 835 -------------------------GRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQS 869

Query: 311 -HAGLVDLGIQ 320
            H   +DLG +
Sbjct: 870 KHRAKIDLGTE 880



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 46/266 (17%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           + +H  V K  L  D      L++ Y K   L+ A ++F  +  ++ V+W  +ISG+   
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 278 GKGEKALRLFDKMKDE--GMKPDSITFVALLLACNHAGLVDLGI---------------- 319
           G  E A  LF  M  E  G +P S TF ++L AC  +G   LG                 
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 320 -QYFDSMVNDYG--------IAAKPDHYTCMVDLL---------GRAGKLVEAVDLIKKM 361
               +++++ YG        +A +    T + DL+          + G  +    L + M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 362 PF-------KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV--QLANIY 412
            +       +P    FG+L++A  +     L     + +  L    ++  YV   L + +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYL-SSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPG 438
           A     D+   I L +KE N V + G
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNG 349


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 311/554 (56%), Gaps = 30/554 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +F+ IP P +  YN ++S +         AF  + R+    T   N    GF     
Sbjct: 59  ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPN----GFTFP-- 112

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                 LF A     S  W       +  G+      L  + P        A+++ Y K 
Sbjct: 113 -----SLFKAC---GSQPW-------LRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKC 157

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA--ED---GLKLLRMMIGLG---IRPN 197
           GKV     LF+++   +L +WN++++ YV NS A  ED    L++L + I +    I+ N
Sbjct: 158 GKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKAN 217

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +L +++  C+ L +L  G   H  V K  L  +    T LI MY KCG L+ AC+LF 
Sbjct: 218 EVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFD 277

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++  +D + +NAMI G+A HG G +AL LF KM  EG+ PD +T V  + +C+H GLV+ 
Sbjct: 278 QLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEE 337

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G   F+SM   YG+  K +HY C+VDLLGRAG+L EA + +  MP KP   I+ +LL A 
Sbjct: 338 GCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAA 397

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           RVH  L++ E    +L  L P   +G YV L+N+YA++ +WDDV R+R  MK++ + K+P
Sbjct: 398 RVHGNLEIGEVVLKHLIQLEP-ETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVP 456

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S +EVG  +HEF  GD+ HP    I+ KL+E+ +R+   G+ P     L  + EE KE
Sbjct: 457 GSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKE 516

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
             L +HSE+LAIAF LI      PIR+ KNLRVCGDCH ++K IS I +REIIVRD  RF
Sbjct: 517 DALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRF 576

Query: 558 HHFKDGTCSCGDYW 571
           HHFK+G CSC DYW
Sbjct: 577 HHFKEGACSCSDYW 590



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 141/300 (47%), Gaps = 43/300 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            + L  +  + GK+   + LF++I +PD+ S+N +LS  + NS  +            +D
Sbjct: 147 QAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAIC-----------ED 195

Query: 70  TASWNTMISGFVQ-KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA----VELF 124
            +    +++ F++ +K++ KA          N V+  A+IS   E G L +     V + 
Sbjct: 196 VSLSLEVLTLFIEMQKSLIKA----------NEVTLVALISACAELGALSQGAWAHVYVL 245

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K     +    TA+I  Y K G +DLA +LFD++P ++ + +NAMI G+  + +    L 
Sbjct: 246 KHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALD 305

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP------ 238
           L + M   G+ P+  +L   +  CSH+  ++ G      VF+S   K+   + P      
Sbjct: 306 LFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCD----VFES--MKEVYGVEPKLEHYG 359

Query: 239 -LISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGK---GEKALRLFDKMKDE 293
            L+ +  + G L +A +  L +  K + V W +++     HG    GE  L+   +++ E
Sbjct: 360 CLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPE 419


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 304/527 (57%), Gaps = 13/527 (2%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           DD V  FD   R+  +D  +W+TM++GFV      +A ++++ M      +   +I G +
Sbjct: 155 DDAVKVFD---RMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVM 211

Query: 113 EC------GQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +        ++  +V   L + A    VV  T+++  Y K G  D A ++F+ MP +N V
Sbjct: 212 QACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDV 271

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +W+A+I+   +   A++ L L RMM   G+ PN+  +   LL CS L  L+LGK +H  +
Sbjct: 272 SWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFI 331

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            ++ L  D    T +I MY KCG L  A  LF ++  +D+++WN MI+    HG+G  AL
Sbjct: 332 LRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDAL 390

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF +MK   ++PD  TF +LL A +H+GLV+ G  +F+ MVN+YGI     H  C+VDL
Sbjct: 391 SLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDL 450

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           L R+G + EA  L+  +  KP  +I   LLS C  + +L+L E  A  +  L P +  G 
Sbjct: 451 LARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDV-GV 509

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
              ++N+YAA K W  V  +R  MK++   K PG S IE+   +H F   D+ HP+   I
Sbjct: 510 LALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQI 569

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
            + + +L+  M+  GY+P  EF  H + E VKEQLL  HSE+LA AFGL+    GT + V
Sbjct: 570 LQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVV 629

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVCGDCH A KY+S I  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 630 IKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 171/380 (45%), Gaps = 44/380 (11%)

Query: 41  YNIMLSCILL---NSDDVVAAFDFFQRLPIKDTA--SWNTMISGFVQKKNMAKARDLFLA 95
           ++I+ SC+      + D+ AA       P   ++  +WN +++   +  +  +A  +F A
Sbjct: 35  HHILSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRA 94

Query: 96  MP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKV 148
           +P     +S +++  +S     G L     +   A        +   +++++ Y K G +
Sbjct: 95  LPPAARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAM 154

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D A K+FD M  ++ VTW+ M+ G+V        +++   M   G+  +   +  V+  C
Sbjct: 155 DDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQAC 214

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           +     ++G  VH  + +  +  D    T L+ MY K G  + A ++F  +  ++ V+W+
Sbjct: 215 AATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWS 274

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG--IQYF---- 322
           A+IS  AQ+G  ++AL LF  M+  G+ P+S   V  LLAC+  GL+ LG  I  F    
Sbjct: 275 ALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT 334

Query: 323 ---DSMVN--------------------DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
              D MV                     D  ++     +  M+   G  G+  +A+ L +
Sbjct: 335 LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQ 394

Query: 360 KM---PFKPQPAIFGTLLSA 376
           +M     +P  A F +LLSA
Sbjct: 395 EMKRNEVRPDHATFASLLSA 414



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 21/156 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G L  AQ LFDK+   D++S+N+M++C   +    D ++ F   +R  ++ D A++ +++
Sbjct: 353 GSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLL 412

Query: 78  SGFVQKKNMAKARDLFLAM--------PEKNSVSWSAMI--SGYIECGQLDKAVELFKVA 127
           S       + + +  F  M         EK+ V    ++  SG +E  + +  V      
Sbjct: 413 SALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVE--EANGLVASLHSK 470

Query: 128 PVKSVVAWTAMISGYMKFGKVDL----AEKLFDEMP 159
           P  S++   A++SG +   K++L    AEK+ +  P
Sbjct: 471 PTISIL--VALLSGCLNNNKLELGESTAEKILELQP 504


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 334/617 (54%), Gaps = 52/617 (8%)

Query: 5   TTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF 59
            + +WNS+++ +A      G     QE+     +PD++++N +LS  LL    ++V+  F
Sbjct: 297 NSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNF 356

Query: 60  DFFQRLPIK------------------------------------DTASWNTMISGFVQK 83
              Q    K                                    D     +++  +++ 
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKN 416

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMI 139
             + KA  +F     KN  +W+++ISGY   G  D A +L      + +    V W +++
Sbjct: 417 DCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLV 476

Query: 140 SGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           SGY   G+ + A  + + +     T N+V+W AMI+G  +N    D L+    M    ++
Sbjct: 477 SGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVK 536

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN++++ ++L  C+  S L++G+++H    +     D    T LI MY K G L+ A ++
Sbjct: 537 PNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEV 596

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  I+ K +  WN M+ GYA +G GE+   LFD+M+  G++PD+ITF ALL  C ++GLV
Sbjct: 597 FRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLV 656

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G +YFDSM  DY I    +HY+CMVDLLG+AG L EA+D I  +P K   +I+G +L+
Sbjct: 657 MDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLA 716

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+HK + +AE AA NL  L P N+A  Y  + NIY+   +W DV R++ SM     VK
Sbjct: 717 ACRLHKDIKIAEIAARNLLRLEPYNSAN-YALMMNIYSTFDRWGDVERLKESMTALG-VK 774

Query: 436 MPG-YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           +P  +SWI+V   +H F +  + HPE   I+ +L +L   +K  GYV D+      + + 
Sbjct: 775 IPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDS 834

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE++LL H+EKLA+ +GL+K   G+PIRV KN R+C DCH   KYIS    REI +RD 
Sbjct: 835 EKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDG 894

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHF +G CSC D W
Sbjct: 895 GRFHHFMNGECSCKDRW 911



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 172/396 (43%), Gaps = 51/396 (12%)

Query: 42  NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ LSC L+N  +     D     F   P+++   WNT++   ++ +    A +LF  M 
Sbjct: 165 DVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQ 224

Query: 98  EKNSVSWSAMISGYIE-CGQLDKAVE-------LFKVAPVKSVVAWTAMISGYMKFGKVD 149
             ++ +    I   ++ CG+L    E       + +   V +     +++S Y +  +++
Sbjct: 225 SASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLE 284

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG-- 207
           LA   FD     N  +WN++I+ Y  N        LL+ M   G++P+  + +S+L G  
Sbjct: 285 LARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHL 344

Query: 208 ------------------------CSHLSSLQ---------LGKQVHQLVFKSPLCKDTT 234
                                   CS  S+LQ         LGK++H  + +S L  D  
Sbjct: 345 LQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVY 404

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
             T L+  Y K   L+ A  +F   + K++  WN++ISGY   G  + A +L ++MK+EG
Sbjct: 405 VCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEG 464

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +KPD +T+ +L+   + +G  +  +   +  +   G+      +T M+    +    ++A
Sbjct: 465 IKPDLVTWNSLVSGYSMSGRSEEALAVINR-IKSLGLTPNVVSWTAMISGCCQNENYMDA 523

Query: 355 VDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAE 387
           +    +M     KP      TLL AC     L + E
Sbjct: 524 LQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGE 559



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 6/218 (2%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL---G 193
           +M+  Y++FG  + A K+F     +N + WN+ I  +   S+  D  ++L +   L   G
Sbjct: 69  SMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFA--SFGGDSHEILAVFKELHDKG 126

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           ++ ++ +L+ VL  C  L  L LG +VH  + K     D      LI++Y K   ++ A 
Sbjct: 127 VKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGAN 186

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F E   ++   WN ++    +  K E AL LF +M+    K    T V LL AC    
Sbjct: 187 QVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLR 246

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            ++ G Q    ++  +G  +       +V +  R  +L
Sbjct: 247 ALNEGKQIHGYVIR-FGRVSNTSICNSIVSMYSRNNRL 283


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/497 (41%), Positives = 304/497 (61%), Gaps = 9/497 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQL 117
           F+ +P +D  SWNT+ISG  Q      A    R++  A    +S + S+++  + E   L
Sbjct: 153 FEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNL 212

Query: 118 DKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            K  E+   A        V   +++I  Y K  +VD + ++F  +P  + ++WN++IAG 
Sbjct: 213 LKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGC 272

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V+N   ++GLK  + M+   I+PN  S SS++  C+HL++L LGKQ+H  + +S    + 
Sbjct: 273 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 332

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+ MY KCG++  A  +F +++  D+V+W AMI GYA HG    A+ LF +M+ E
Sbjct: 333 FIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVE 392

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KP+ + F+A+L AC+HAGLVD   +YF+SM  DY I    +HY  + DLLGR G+L E
Sbjct: 393 GVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEE 452

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A + I  M  +P  +++ TLL+ACRVHK ++LAE  +  LF ++P N  G YV L+NIY+
Sbjct: 453 AYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQN-IGAYVLLSNIYS 511

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  +W D  ++R++M++  + K P  SWIE+   VH F +GD+ HP    I+E LK L +
Sbjct: 512 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLE 571

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +M+  GYV D    LH V EE K  LL  HSE+LAI FG+I  P GT IRV KNLRVC D
Sbjct: 572 QMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVD 631

Query: 534 CHRATKYISAIEKREII 550
           CH ATK+IS I  REI+
Sbjct: 632 CHTATKFISKIVGREIV 648



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 121/213 (56%), Gaps = 9/213 (4%)

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           K+F+ MP +++V+WN +I+G  +N   ED L ++R M    +RP++ +LSSVL   +   
Sbjct: 151 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 210

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L  GK++H    ++    D    + LI MY KC  ++D+C++F  + + D ++WN++I+
Sbjct: 211 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 270

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G  Q+G  ++ L+ F +M    +KP+ ++F +++ AC H   + LG Q     ++ Y I 
Sbjct: 271 GCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ-----LHGYIIR 325

Query: 333 AKPDH----YTCMVDLLGRAGKLVEAVDLIKKM 361
           ++ D      + +VD+  + G +  A  +  KM
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 358


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/482 (39%), Positives = 299/482 (62%), Gaps = 3/482 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L  +    G++ DA  LF+ +P  D  S+NI+L+  L+ S ++  A  
Sbjct: 124 MPERNVVSWNTMLEAYTSS-GRVGDACTLFNGMPVRDAGSWNILLAA-LVRSGNIDKARK 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  +W TM++G  +  ++ +AR LF  MPE+N VSW+AMISGY     +D+A
Sbjct: 182 LFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEA 241

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF   P + + +W  MI+G+++   ++ A++LFD+MP +N+VTW  M+ GY+++  +E
Sbjct: 242 HDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSE 301

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L+L   M+  GIRPN  +    +  CS+L+ L  G+QVHQ++ K+P   DT   + L+
Sbjct: 302 TALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLM 361

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG++  A K+F   + KDV++WN MI+ YA HG G +A+ L++KM++ G KP+ +
Sbjct: 362 NLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDV 421

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+V LL AC+H+GLVD G++ F+ MV D  IA + +HYTC++DL  RAG+L +A  LI  
Sbjct: 422 TYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHF 481

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           +  +P   ++  LL  C  H    + + AA NL    P N AG Y  L NIYA+  KW +
Sbjct: 482 LKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEP-NNAGTYTLLCNIYASAGKWKE 540

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
            A+IR  M +  + K PG SWIEV   VH F S D+ H E   I+  L+++   M++A  
Sbjct: 541 AAKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINSLLQDIHDIMRMADT 600

Query: 481 VP 482
           VP
Sbjct: 601 VP 602



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 50/338 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSV 132
           N  ++       ++ AR LF   P+++ VSW+A+++ Y   G L  A  LF +    ++V
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNV 98

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V WTA++SGY + G+VD AE LF  MP +N+V+WN M+  Y  +    D   L     G+
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFN---GM 155

Query: 193 GIRP------------------------------NASSLSSVLLGCSHLSSLQLGKQVHQ 222
            +R                               N  + ++++ G +   S+   +    
Sbjct: 156 PVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARA--- 212

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            +F     ++  +   +IS Y +   +++A  LF+++  +D+ +WN MI+G+ Q+   E+
Sbjct: 213 -LFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLER 271

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM- 341
           A  LFDKM     + + +T+  ++     +   +  +Q F+ M+ D GI  +P+  T + 
Sbjct: 272 AQELFDKMP----RRNVVTWTTMMNGYLQSIQSETALQLFNGMLID-GI--RPNQVTFLG 324

Query: 342 -VDLLGRAGKLVEAV---DLIKKMPFKPQPAIFGTLLS 375
            VD       L E      +I K PF+    I  TL++
Sbjct: 325 AVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMN 362



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 25/269 (9%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G+V  A +LFD  P +++V+W A++A Y       D   L         RP+A    +V+
Sbjct: 49  GRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD-------RPDAR--RNVV 99

Query: 206 LGCSHLSSLQLGKQVH--QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
              + LS      +V   + +F     ++  +   ++  Y   G + DAC LF  +  +D
Sbjct: 100 TWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRD 159

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
             +WN +++   + G  +KA +LFD+M +  +    + +  ++     +G V+     FD
Sbjct: 160 AGSWNILLAALVRSGNIDKARKLFDRMPERNV----MAWTTMVAGIARSGSVNEARALFD 215

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
            M     ++     +  M+    R   + EA DL  KMP +   A +  +++    +K L
Sbjct: 216 GMPERNVVS-----WNAMISGYARNHMIDEAHDLFMKMPTR-DIASWNIMITGFIQNKNL 269

Query: 384 DLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           + A+     LF+  P      +  + N Y
Sbjct: 270 ERAQ----ELFDKMPRRNVVTWTTMMNGY 294



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           ++     G + DA +LF     +DVV+W A+++ YA  G    A  LFD+      + + 
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR---PDARRNV 98

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +T+ ALL     AG VD     F  M     ++     +  M++    +G++ +A  L  
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFGRMPERNVVS-----WNTMLEAYTSSGRVGDACTLFN 153

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP +   + +  LL+A      +D A      LF+  P      +  +    A     +
Sbjct: 154 GMPVRDAGS-WNILLAALVRSGNIDKAR----KLFDRMPERNVMAWTTMVAGIARSGSVN 208

Query: 420 DVARIRLSMKENNVVK----MPGYS 440
           +   +   M E NVV     + GY+
Sbjct: 209 EARALFDGMPERNVVSWNAMISGYA 233


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/483 (41%), Positives = 297/483 (61%), Gaps = 4/483 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L  +A   G+  DA  LFD++P  D  S+NI+L+ +L+ S  V  A +
Sbjct: 129 MPQRNVVSWNTMLEAYAVA-GRAGDACALFDRMPVRDAGSWNILLA-MLVRSGSVDKARE 186

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P +D  +W TM+ G  +  N+ +AR LF +MPE+N VSW+AMISGY    +LD+A
Sbjct: 187 LFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEA 246

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++LF   P + + +   MI+G+++   +  A KLFDEMP +N+VTW  M+ GY++   +E
Sbjct: 247 LDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSE 306

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L L R M+  GIRPN  +    L  CS L++L  GKQVHQ++ K+    DT   + L+
Sbjct: 307 LSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALM 366

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG++  A KLF   + KD+++WN +I+ YA HG G +A+ L++KM+  G +P+ +
Sbjct: 367 NVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDV 426

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+V LL AC+H+GLVD G++ F+SMVND  IA + +HYTC++DL  RAG+L +A  LI  
Sbjct: 427 TYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHY 486

Query: 361 MPFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
           +  KP   +++  LL  C  H    +   AA NL    P N AG Y  L+NIYA+  KW 
Sbjct: 487 LKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDN-AGTYTLLSNIYASAGKWK 545

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           + A IR  M    + K PG SWIEV   VH F + D+ H E   I+  L+ +   M++ G
Sbjct: 546 EAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHYMMRIVG 605

Query: 480 YVP 482
            VP
Sbjct: 606 TVP 608



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV-KSV 132
           N +I        +  AR LF   PE++ VSW+A++S Y   G L  A  LF  +   ++V
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V WTA++SGY + G VD AE LF  MP +N+V+WN M+  Y     A D   L   M   
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRM--- 160

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            +R +A S + +L       S+    +  +L  + P  +D  A T ++    + G++++A
Sbjct: 161 PVR-DAGSWNILLAMLVRSGSVD---KARELFGRMPE-RDVMAWTTMVDGVARSGNVDEA 215

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
             LF  +  ++VV+WNAMISGY ++ + ++AL LF KM
Sbjct: 216 RLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKM 253



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 23/209 (11%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI      G + DA KLF     +DVV+W A++S YA+ G    A  LFD+      + +
Sbjct: 46  LIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDR---SDARRN 102

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +T+ ALL     AGLVD     F  M     ++     +  M++    AG+  +A  L 
Sbjct: 103 VVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVS-----WNTMLEAYAVAGRAGDACALF 157

Query: 359 KKMPFKPQPA---IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
            +MP +   +   +   L+ +  V K        A  LF   P      +  + +  A  
Sbjct: 158 DRMPVRDAGSWNILLAMLVRSGSVDK--------ARELFGRMPERDVMAWTTMVDGVARS 209

Query: 416 KKWDDVARIRLSMKENNVVK----MPGYS 440
              D+   +  SM E NVV     + GY+
Sbjct: 210 GNVDEARLLFDSMPERNVVSWNAMISGYT 238


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/620 (36%), Positives = 335/620 (54%), Gaps = 57/620 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-----IPQPDVVSYNIMLSCILLNSDDVVAA 58
           +  V+WN++L  +A Q G + +A  LF +     I    V   N    C  L    ++  
Sbjct: 289 RDVVSWNAMLGAYA-QHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHG 347

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
               + L  +D    N ++  + +  +  +AR LF  +P  N+VSW+ MI+G  + GQ+ 
Sbjct: 348 CALEKGLD-RDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMK 405

Query: 119 KAVELFK------VAPVKSV-------------------------------------VAW 135
           +AVELF+      +APV++                                         
Sbjct: 406 RAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIG 465

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKN---LVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           TA++  Y   G +D A   F     ++   +V+WNA+I+   ++   +  L   R M   
Sbjct: 466 TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLH 525

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ PN  +  +VL  C+  ++L  G+ VH  +  S +  +    T L SMY +CG LE A
Sbjct: 526 GVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESA 585

Query: 253 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
            ++F ++   +DVV +NAMI+ Y+Q+G   +AL+LF +M+ EG +PD  +FV++L AC+H
Sbjct: 586 REIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSH 645

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GL D G + F SM   YGIA   DHY C VD+LGRAG L +A +LI+ M  KP   ++ 
Sbjct: 646 GGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWK 705

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
           TLL ACR ++ +D    A   +  L+P + +  YV L+NI A   KWD+ A +R  M+  
Sbjct: 706 TLLGACRKYRDVDRGRLANSMVRELDPGDESA-YVVLSNILAGAGKWDEAAEVRTEMESR 764

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K  G SWIE+ + VHEF +GDR HP    I+ +L+ L   ++  GYVPD    L  V
Sbjct: 765 GLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKV 824

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            E  KE+LL  HSE+LAIA G++     T +RV KNLRVC DCH ATK+IS I  +EI+V
Sbjct: 825 DEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVV 883

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RDT RFHHF DG+CSCGDYW
Sbjct: 884 RDTHRFHHFVDGSCSCGDYW 903



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECG 115
           + F RL ++D ASW T+I+ + +     +A  +F  M ++    ++V++ A++      G
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 116 QLD--KAVELFKVAPV---KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
            L   +++  + V      KSV+A   ++  Y   G V  A  LF++M  ++LV+WNA I
Sbjct: 143 DLSQGRSIHAWIVESGLKGKSVLA-NLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAI 200

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A   ++      L+L + M   G+RP   +L   L  C+   +++  + +H +V +S L 
Sbjct: 201 AANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLE 257

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +     T L S Y + G L  A ++F     +DVV+WNAM+  YAQHG   +A  LF +M
Sbjct: 258 QTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLG 346
             EG+ P  +T V     C+           F  M++   +    D        ++D+  
Sbjct: 318 LHEGISPSKVTLVNASTGCSSL--------RFGRMIHGCALEKGLDRDIVLGNALLDMYT 369

Query: 347 RAGKLVEAVDLIKKMP 362
           R G   EA  L K++P
Sbjct: 370 RCGSPEEARHLFKRIP 385



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y+K   +   E++F  +  ++  +W  +I  Y E+  A+  + +   M   G+R +A + 
Sbjct: 72  YLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTF 131

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
            +VL  C+ L  L  G+ +H  + +S L   +     L+ +Y  CG +  A  LF +++R
Sbjct: 132 LAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMER 191

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            D+V+WNA I+  AQ G    AL LF +M+ EG++P  IT V  L  C
Sbjct: 192 -DLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVC 238



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L  G+++H  +    L ++      L+ +Y KC  L D  ++F  ++ +D  +W  +I+ 
Sbjct: 45  LSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y +HG+ ++A+ +F +M+ EG++ D++TF+A+L AC   G +  G +   + + + G+  
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RSIHAWIVESGLKG 161

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           K      ++ + G  G +  A+ L +KM
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFEKM 189


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/504 (41%), Positives = 294/504 (58%), Gaps = 10/504 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVA 127
           N ++S + +   +++AR +   M  ++ VSW+++++GY +  + D A+E+       K++
Sbjct: 180 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKIS 239

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                +A             V   + +F +M  K+LV+WN MI  Y++N+   + ++L  
Sbjct: 240 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 299

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G  P+A S++SVL  C   S+L LGK++H  + +  L  +      LI MY KCG
Sbjct: 300 GMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCG 359

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L+ A  +F  ++ +DVV+W AMIS Y   G+G  A+ LF KM+D G+ PDSI FV  L 
Sbjct: 360 CLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLA 419

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL++ G   F  M + Y I  + +H  CMVDLLGRAGK+ EA   I++MP +P  
Sbjct: 420 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNE 479

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LL ACRVH   D+   AA  LF L P   +G YV L+NIYA   +W++V  IR  
Sbjct: 480 RVWGALLGACRVHSNTDIGLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNI 538

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MK   + K PG S +EV  ++H F  GDR HP+   I+ +L  L K+MK  GYVPD E A
Sbjct: 539 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESA 598

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVP---LGTPIRVFKNLRVCGDCHRATKYISAI 544
           LH V EE KE  L  HSEKLAI F L+          IR+ KNLR+CGDCH A K IS I
Sbjct: 599 LHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQI 658

Query: 545 EKREIIVRDTTRFHHFKDGTCSCG 568
             REII+RDT RFH F+ G CSC 
Sbjct: 659 TSREIIIRDTNRFHVFRFGVCSCA 682



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 20/297 (6%)

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----------WTAMISGYM 143
           L + +KNS   +A + G +    LD   +L  +  V S +              ++  Y 
Sbjct: 31  LELDQKNSPKETAFMLGQV----LDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYA 86

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
               V  A K+FDE+P +N++  N MI  YV N +  +G+++   M    ++P+  +   
Sbjct: 87  SLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPC 146

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL  CS   ++ +GK++H    K  L         L+SMY KCG L +A  +  E+ R+D
Sbjct: 147 VLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 206

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           VV+WN++++GYAQ+ + + AL +  +M+   +  D+ T  +LL A ++    +  + Y  
Sbjct: 207 VVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN--VMYVK 264

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
            M    G  +    +  M+ +  +    VEAV+L   M    F+P      ++L AC
Sbjct: 265 DMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 179/410 (43%), Gaps = 72/410 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
           M+ +  V+WNS++AG+A Q  +  DA E+  ++    +      ++ +L       +++V
Sbjct: 202 MSRRDVVSWNSLVAGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           +   D F ++  K   SWN MI  +++     +A +L+  M     E ++VS ++++   
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPA- 319

Query: 112 IECG---------QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             CG         ++   +E  K+ P  +++   A+I  Y K G +D A  +F+ M +++
Sbjct: 320 --CGDTSALSLGKKIHGYIERKKLIP--NLLLENALIDMYAKCGCLDRARDVFENMKSRD 375

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+W AMI+ Y  +    D + L   M   G+ P++ +  + L  CSH   L+ G+   +
Sbjct: 376 VVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 435

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+       D   +TP +           AC                M+    + GK ++
Sbjct: 436 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 465

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AKPDHYTCM 341
           A +   +M    M+P+   + ALL AC      D+G+   D +   + +A  +  +Y  +
Sbjct: 466 AYKFIQEMP---MEPNERVWGALLGACRVHSNTDIGLLAADKL---FQLAPEQSGYYVLL 519

Query: 342 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVH 380
            ++  +AG+  E     +++K    K  P         I  T L   R H
Sbjct: 520 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 569


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/539 (39%), Positives = 310/539 (57%), Gaps = 51/539 (9%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC-GQLDKAVELF---------- 124
           M +    +++M  AR +F  MP  N +SW+A+ISGY++C GQ + AVEL           
Sbjct: 293 MYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEP 352

Query: 125 -----------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
                                        K +     V   A++S Y + G ++ A K F
Sbjct: 353 NHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAF 412

Query: 156 DEMPTKNLVTWNAMIA--GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           D++  +NL++ ++ I   G    SW+    ++  M +G+     AS LS+     + +  
Sbjct: 413 DQLYERNLLSTSSDIGETGRSNASWSS---QIESMDVGVSTFTFASLLSAA----ATVGL 465

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMIS 272
              G+Q+H L  K+    D      L+SMY +CG L+DAC+ F E++   +V++W ++IS
Sbjct: 466 PTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIIS 525

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
             A+HG  E+AL LF  M   G+KP+ +T++A+L AC+H GLV  G +YF SM  D+ + 
Sbjct: 526 ALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLI 585

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
            + +HY CMVDLL R+G + EA++ I +MP K    ++ TLL ACR ++ +++ E AA +
Sbjct: 586 PRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARH 645

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           + +L P + A  YV L+N+YA    WD+VARIR  M+  N+ K  G SW+ VG  +HEFR
Sbjct: 646 VIDLEPQDPAP-YVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFR 704

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           +GD  HP    I+ KL  L + +K  GYVPD    LH + +++KEQ LL HSEK+A+AFG
Sbjct: 705 AGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFG 764

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI      PIR+FKNLRVC DCH A KYIS    REII+RD+ RFH  KDG CSCG+YW
Sbjct: 765 LITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 173/388 (44%), Gaps = 59/388 (15%)

Query: 42  NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ + C L++    + D+VAA   F  L  +    W  MI+ +VQ     KA +LFL M 
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 98  EK----NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKF---G 146
           E     +  + S+M+S   E G      +L     ++  V        ++  Y K     
Sbjct: 242 EDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQ 301

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSSVL 205
            ++ A K+F  MPT N+++W A+I+GYV+    E + ++LL  M+   I PN  + SS+L
Sbjct: 302 SMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLL 361

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C++LS    G+Q+H  V K+ +         L+SMY + G +E+A K F ++  ++++
Sbjct: 362 KACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLL 421

Query: 266 ------------------------------TWNAMISGYAQHG---KGEKALRLFDKMKD 292
                                         T+ +++S  A  G   KG++   L  K   
Sbjct: 422 STSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGF 481

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           E  K  S + V++   C   G +D   + FD M +D+ + +    +T ++  L + G   
Sbjct: 482 ESDKGISNSLVSMYSRC---GYLDDACRAFDEMEDDHNVIS----WTSIISALAKHGHAE 534

Query: 353 EAVDLIKKMPF---KPQPAIFGTLLSAC 377
            A+ L   M     KP    +  +LSAC
Sbjct: 535 RALSLFHDMILSGVKPNDVTYIAVLSAC 562



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           ++++ Y K G V  A ++FD M   ++LV+W AM      N   ++ L LL  M+  G+R
Sbjct: 84  SLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLESGLR 143

Query: 196 PNASSLSSVLLGCSHLSSLQL-GKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDAC 253
           PNA +L +    C      +  G  V     K+     D +    LI M+ + GDL  A 
Sbjct: 144 PNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAAR 203

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K+F  +  + VV W  MI+ Y Q G   KA+ LF  M ++G +PD  T  +++ AC   G
Sbjct: 204 KVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQG 263

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
              LG Q   S+V   G+ +       +VD+  +  ++ ++++  +K+ FK  P
Sbjct: 264 SAGLG-QQLHSLVLRLGLVSDTCVSCGLVDMYTKL-QMEQSMECARKV-FKRMP 314



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 216 LGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISG 273
           LG+ +H +L+    L  D      L++MY KCG +  A ++F  ++  +D+V+W AM   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             ++G  ++AL L  +M + G++P++ T  A   AC
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHAC 156


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/487 (39%), Positives = 300/487 (61%), Gaps = 3/487 (0%)

Query: 87  AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
           A A  L L   +K+    +++I  Y+ CG +  A ++     VK V++WT++++ Y +  
Sbjct: 168 AHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSR 227

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            +  AE++F   P K++V W AM+ GY +N+     L+    M G G+  +  SL+  + 
Sbjct: 228 DMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAIS 287

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C+ L +++    + ++  +S L ++    + L+ MY KCG +++AC++F  +Q K+V T
Sbjct: 288 ACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYT 347

Query: 267 WNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +++MI G A HG+   A+ LF+ M +   ++P+ +TF+ +L AC+HAG+V  G  YF  M
Sbjct: 348 YSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQM 407

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
            + YGI    DHYTCMVDLLGRAG ++EA+DL+K M  +P   ++G LL ACR+H    +
Sbjct: 408 KDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKV 467

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-V 444
           A+ AA +LF L P    G YV L+N  A+  +WD+V+++R  M+   + K P  S  E  
Sbjct: 468 AKVAAQHLFKLEP-EGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGR 526

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
             +VH+F +GD  HP +  I + L EL  R+KLAGYVP L   ++ V +E KE+LL+ HS
Sbjct: 527 DGLVHQFFAGDNTHPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHS 586

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
           EKLA++FGL+ +   + IR+ KNLR+C DCH   + +S +E  EIIVRD  RFHHF+DG 
Sbjct: 587 EKLALSFGLLTLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGE 646

Query: 565 CSCGDYW 571
           CSCG +W
Sbjct: 647 CSCGGFW 653



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 141/320 (44%), Gaps = 46/320 (14%)

Query: 12  VLAGFAKQR-------------GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +L GF K R             G +  A+++ D++   DV+S+  +++     S D+ +A
Sbjct: 174 LLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAA-YSRSRDMGSA 232

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIEC 114
            + F   P+KD  +W  M++G+ Q     KA + F  M       + VS +  IS   + 
Sbjct: 233 EEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQL 292

Query: 115 GQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           G + +AV + ++A      ++VV  + ++  Y K G +D A ++F+ M  KN+ T+++MI
Sbjct: 293 GAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMI 352

Query: 171 AGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
            G   +  A D + L   M+    + PN  +   VL  CSH   ++ G+      +    
Sbjct: 353 VGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGR------YYFAQ 406

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV----------TWNAMISGYAQHGK 279
            KD   + P    Y    DL     L +E    D+V           W A++     HG 
Sbjct: 407 MKDRYGILPSADHYTCMVDLLGRAGLVIEAL--DLVKSMTVEPHGGVWGALLGACRIHGN 464

Query: 280 GE----KALRLFDKMKDEGM 295
            +     A  LF K++ EG+
Sbjct: 465 TKVAKVAAQHLF-KLEPEGI 483


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 296/524 (56%), Gaps = 42/524 (8%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ +A    + +   D  SWN+MI G V+     +A  LF  M  +N           + 
Sbjct: 365 DLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLN 424

Query: 114 C---GQLD-KAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
           C   G++D K+V   + K       +   A++  Y K   ++ A  +F++M  K++++W 
Sbjct: 425 CCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWT 484

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           +++ GY +N   E+ LK    M   G+ P+   ++S+L  C+ L+ L+ GKQVH    K 
Sbjct: 485 SLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKL 544

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L    +    L++MY KCG L+DA  +F+ +  +DV+TW A+I GYA++GKG  +L+ F
Sbjct: 545 GLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYF 604

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +MK                                     YGI   P+HY CM+DL GR
Sbjct: 605 QQMK-----------------------------------KIYGIEPGPEHYACMIDLFGR 629

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
            GKL EA +++ +M  KP   ++  LL+ACRVH  L+L E AA NLF L P NA   YV 
Sbjct: 630 LGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGERAATNLFELEPMNAMP-YVM 688

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           L+N+Y A +KWDD A+IR  MK   + K PG SWIE+ + +H F S DR HP    I+ K
Sbjct: 689 LSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSRLHTFISEDRGHPREAEIYSK 748

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           + E+ +R+K  GYVPD+ F+LH +  E KE  L +HSEKLA+AFGL+  P G PIR+FKN
Sbjct: 749 IDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKLAVAFGLLASPPGAPIRIFKN 808

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVCGDCH A KYIS +  R II+RD+  FHHFK+G CSC DYW
Sbjct: 809 LRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 212/476 (44%), Gaps = 51/476 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++  + N +L G +K  G++ DA+ELFDK+ Q D  ++N M+S    N   +V A + F 
Sbjct: 113 QSIFHSNQLLNGLSKS-GQIDDARELFDKMLQRDEYTWNTMVSG-YANVGRLVEARELFN 170

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDK 119
               + + +W+++ISG+ +    A+A DLF  M     + +  +  +++ G    G + K
Sbjct: 171 GFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQK 230

Query: 120 AVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTK--NLVTWNAMIAG 172
             E+     VK+     V     ++  Y K   +  AE LF  +     N V W AM+ G
Sbjct: 231 G-EMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTG 289

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N      ++  R M   G+  N  +  S+L  CS +S+   G+QVH  + ++    +
Sbjct: 290 YAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCN 349

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               + L+ MY KCGDL  A ++   ++  DVV+WN+MI G  +HG  E+A+ LF KM  
Sbjct: 350 AYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHA 409

Query: 293 EGMKPDSITFVALLLAC---------NHAGLVDLGIQYF----DSMVNDYGIAAKPDHYT 339
             MK D  TF ++L  C          H  ++  G + +    +++V+ Y   AK +   
Sbjct: 410 RNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMY---AKTEDLN 466

Query: 340 C------------------MVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSACR 378
           C                  +V    + G   E++     M      P   I  ++LSAC 
Sbjct: 467 CAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACA 526

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
               L+  +    +   L   ++      L  +YA     DD   I +SM   +V+
Sbjct: 527 ELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVI 582



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 116/260 (44%), Gaps = 17/260 (6%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           ++D+  A+  F+++  KD  SW ++++G+ Q  +  ++   F  M   + VS    I   
Sbjct: 462 TEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDM-RISGVSPDQFIVAS 520

Query: 112 I--ECGQLD-----KAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           I   C +L      K V  +  K+    S+    ++++ Y K G +D A+ +F  M  ++
Sbjct: 521 ILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRD 580

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           ++TW A+I GY  N    D LK  + M  + GI P     + ++     L  L   K++ 
Sbjct: 581 VITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEIL 640

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHG 278
             +   P   D T    L++     G+L   E A     E++  + + +  + + Y    
Sbjct: 641 NQMDVKP---DATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLAAR 697

Query: 279 KGEKALRLFDKMKDEGMKPD 298
           K + A ++   MK +G+  +
Sbjct: 698 KWDDAAKIRRLMKSKGITKE 717



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 119/296 (40%), Gaps = 48/296 (16%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVH--QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           A S  S+      L+ L    Q+   + +F   L +D      ++S Y   G L +A +L
Sbjct: 109 ADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEAREL 168

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F     +  +TW+++ISGY + G+  +A  LF +M+ EG KP   T  ++L  C+  GL+
Sbjct: 169 FNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLI 228

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
             G      +V + G  +       +VD+  +   + EA  L K + F     +  T + 
Sbjct: 229 QKGEMIHGYVVKN-GFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMV 287

Query: 376 ACRV-----HKRLDL-----AEFAAMNLFNLNPA-----------------------NAA 402
                    HK ++       E    N F   P+                       N  
Sbjct: 288 TGYAQNGDDHKAIEFFRYMHTEGVESNQFTF-PSILTACSSVSAHCFGEQVHGCIVRNGF 346

Query: 403 GC--YVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW--IEVGTVVHEFR 452
           GC  YVQ  L ++YA         R+  +M++++VV     SW  + VG V H F 
Sbjct: 347 GCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVV-----SWNSMIVGCVRHGFE 397


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/554 (37%), Positives = 312/554 (56%), Gaps = 23/554 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLN---SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           A ++F     P+V  Y  ++  ++L+   +D +   +       + D+ +  +++     
Sbjct: 83  ASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGC 142

Query: 83  KKNMAKARD-----LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
              + + R+     L L +    S+    +I  Y +CG  + A  +F   P + VVA T 
Sbjct: 143 HLALKEGREVHSQVLKLGLSSNRSIRIK-LIELYGKCGAFEDARRVFDEMPERDVVASTV 201

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           MI+ Y   G              K+ V W AMI G V N  +   L++ R M    + PN
Sbjct: 202 MINYYFDHG-------------IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPN 248

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             ++  VL  CS L +LQLG+ V   + K  +  +      LI+MY +CGD+++A ++F 
Sbjct: 249 EVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFE 308

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           +++ K+V+T+N+MI G+A HGK  +A+ LF  +  +G  P S+TFV +L AC+H GL +L
Sbjct: 309 QMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAEL 368

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G + F SM  DYGI  + +HY CMVDLLGR G+L EA   I+ M   P   + G LLSAC
Sbjct: 369 GFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSAC 428

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           ++H  L+LAE  A +L     A++ G Y+ L+N Y++  KW + A +R +M+E  + K P
Sbjct: 429 KIHGNLELAERVAKSLVACKNADS-GTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEP 487

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S IEV   +HEF  GD  HP+   I++KL+EL + ++L GY P  E  LH + +  KE
Sbjct: 488 GCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKE 547

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
             L  HSE+LAI +GLI     T +RV KNLRVC DCH   K IS I +R+I+VRD  RF
Sbjct: 548 WALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRF 607

Query: 558 HHFKDGTCSCGDYW 571
           HHF++G CSCGDYW
Sbjct: 608 HHFENGVCSCGDYW 621



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 125/285 (43%), Gaps = 51/285 (17%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
               +  A K+F      N+  + A+I G V + +  DG+ L   MI   + P++ +++S
Sbjct: 76  NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTS 135

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL  C    +L+ G++VH  V K  L  + +    LI +Y KCG  EDA ++F E+  +D
Sbjct: 136 VLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195

Query: 264 VVT------------------WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           VV                   W AMI G  ++G+  +AL +F  M+ E + P+ +T V +
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCV 255

Query: 306 LLACNHAGLVDLG---IQYFD------------SMVNDYGIAAKPDH------------- 337
           L AC+  G + LG     Y D            +++N Y      D              
Sbjct: 256 LSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNV 315

Query: 338 --YTCMVDLLGRAGKLVEAVDLIK---KMPFKPQPAIFGTLLSAC 377
             Y  M+      GK VEAV+L +   K  F P    F  +L+AC
Sbjct: 316 ITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNAC 360



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 155/349 (44%), Gaps = 57/349 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  +DA+ +FD++P+ DVV+  +M+              +++    IKDT  W  MI G 
Sbjct: 179 GAFEDARRVFDEMPERDVVASTVMI--------------NYYFDHGIKDTVCWTAMIDGL 224

Query: 81  VQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECG--QLDKAVELF--KVAPVKSV 132
           V+     +A ++F  M  +    N V+   ++S   E G  QL + V  +  K     + 
Sbjct: 225 VRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNH 284

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
               A+I+ Y + G +D A+++F++M  KN++T+N+MI G+  +  + + ++L R +I  
Sbjct: 285 FVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQ 344

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G  P++ +   VL  CSH    +LG +    +F S + KD   + P I  Y         
Sbjct: 345 GFTPSSVTFVGVLNACSHGGLAELGFE----IFHS-MAKD-YGIEPQIEHY--------- 389

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
                            M+    + G+ E+A      MK   + PD +   ALL AC   
Sbjct: 390 ---------------GCMVDLLGRLGRLEEAYSFIRMMK---VAPDHVMLGALLSACKIH 431

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           G ++L  +   S+V      A    Y  + +    +GK  EA ++   M
Sbjct: 432 GNLELAERVAKSLVACKN--ADSGTYILLSNAYSSSGKWKEAAEVRTNM 478



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 129/305 (42%), Gaps = 38/305 (12%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K TV W +++ G  +  G+   A E+F  + + DV+   + + C+L    ++ A     
Sbjct: 211 IKDTVCWTAMIDGLVRN-GESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGAL---- 265

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                     W   +  ++ K  +           E N     A+I+ Y  CG +D+A  
Sbjct: 266 ------QLGRW---VRSYMDKHRI-----------ELNHFVGGALINMYSRCGDIDEAQR 305

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGK----VDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +F+    K+V+ + +MI G+   GK    V+L   L  +  T + VT+  ++        
Sbjct: 306 VFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGL 365

Query: 179 AEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
           AE G ++   M    GI P       ++     L  L+   + +  +    +  D   L 
Sbjct: 366 AELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLE---EAYSFIRMMKVAPDHVMLG 422

Query: 238 PLISMYCKC-GDLEDA---CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
            L+S  CK  G+LE A    K  +  +  D  T+  + + Y+  GK ++A  +   M++E
Sbjct: 423 ALLSA-CKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREE 481

Query: 294 GMKPD 298
           G++ +
Sbjct: 482 GIEKE 486



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 115/300 (38%), Gaps = 61/300 (20%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S+L  C H + +     ++  + ++   +D   +  L+ +      +  A K+F   Q  
Sbjct: 37  SLLQNCKHNNQI---PPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNP 93

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------H 311
           +V  + A+I G          + L+ +M +  + PDS    ++L AC            H
Sbjct: 94  NVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVH 153

Query: 312 AGLVDLGI------------------------QYFDSMVNDYGIAAKP------DH---- 337
           + ++ LG+                        + FD M     +A+        DH    
Sbjct: 154 SQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKD 213

Query: 338 ---YTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEF--A 389
              +T M+D L R G+   A+++ + M  +   P       +LSAC     L L  +  +
Sbjct: 214 TVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRS 273

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
            M+   +   +  G    L N+Y+     D+  R+   MKE NV+    Y+ + +G  +H
Sbjct: 274 YMDKHRIELNHFVGG--ALINMYSRCGDIDEAQRVFEQMKEKNVIT---YNSMIMGFALH 328


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 325/586 (55%), Gaps = 21/586 (3%)

Query: 2   NVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDD 54
           NV T   WN+VL+G ++    R  L     +  +  +PD  + + +L  +    LL    
Sbjct: 256 NVAT---WNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 312

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  F F +     D  +   ++  + +   +  A+ +  A+  +N  +W+++++GY   
Sbjct: 313 EIHCF-FLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANA 371

Query: 115 GQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTW 166
           G+ D A+EL ++         +  W  +I+GY   G+   A  L  ++     T N+V+W
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 431

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+G   N   ED       M   G++P+  ++S +L  C+ L+  + GK++H    +
Sbjct: 432 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T LI MY K G L  A  +F  IQ+K++V  NAM++G A HG+G +A+ L
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M + G+KPDSITF ALL AC   GLV  G +YFDSM   YG+    ++Y CMVDLL 
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLA 611

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R G L EA+D I++ P  P  + +G LL+ C +H  L LAE AA NLF L P N+A  Y+
Sbjct: 612 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSAN-YL 670

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            + N+Y   + +D+   ++ +MK   V   PG+SWI++   +H F    + HPE   I+E
Sbjct: 671 LMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYE 730

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRVF 525
           +L  L  ++K AGYVPD     + V EE KE+LLL H+EKLAI +GLI+      P+RV 
Sbjct: 731 ELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVM 790

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KN R+C DCH   K+IS++  R+II+RD  RFHHF DG CSC DYW
Sbjct: 791 KNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 4/200 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD----LAEKLFDEMPTKNLVTW 166
           Y E   +  A  +       SVV W A+++   + G VD    LA ++    P  N+ TW
Sbjct: 201 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATW 260

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N +++G   +    + L ++  M+  G+RP+A+++SS+L   ++   L+ G ++H    +
Sbjct: 261 NTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLR 320

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + L  D    T L+ MY KCG L+ A K+   ++ +++ TWN++++GYA  G+ + AL L
Sbjct: 321 NQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALEL 380

Query: 287 FDKMKDEGMKPDSITFVALL 306
            + MK   + PD  T+  L+
Sbjct: 381 VELMKKNRLDPDITTWNGLI 400



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 52/307 (16%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMP---TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A++    + G+     +L  E      K+ V WN  +A   E    ++ + + R M   G
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP--LISMYCKCGDL-- 249
           +  +  + + VL  C    +L+ G+ VH    K  L  D   L P  L  MY +  D+  
Sbjct: 152 VPADGYTCARVLHACGRAGALREGRAVHAYALK--LALDAHPLVPGFLAGMYAENADVAA 209

Query: 250 -----------------------------EDACKLFLEIQRK----DVVTWNAMISGYAQ 276
                                        +DA +L   + R     +V TWN ++SG ++
Sbjct: 210 ATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSR 269

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG+  +AL +   M  +G++PD+ T  +LL +  + GL+  G++     + +     +PD
Sbjct: 270 HGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRN---QLEPD 326

Query: 337 HY--TCMVDLLGRAGKL---VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
            Y  T +VD+  + G+L    + +D ++        ++     +A R    L+L E    
Sbjct: 327 VYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKK 386

Query: 392 NLFNLNP 398
           N   L+P
Sbjct: 387 N--RLDP 391


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 313/557 (56%), Gaps = 42/557 (7%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           V  A + F  +  KD  SW  M++ F +     +A  LF  M     + N+ +++++   
Sbjct: 190 VDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKA 249

Query: 111 YIECGQLDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
            +     D    +   A +KS     +    A++  Y K G +D A + F+E+P K+++ 
Sbjct: 250 CLGLEAFDVGKSVHGCA-LKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIP 308

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W+ MIA Y ++  +++ +++   M    + PN  + +SVL  C+ +  L LG Q+H  V 
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K  L  D      L+ +Y KCG +E++ +LF E   ++ VTWN +I G+ Q G GEKALR
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALR 428

Query: 286 LFDKMKDE-------------------------------GMKPDSITFVALLLACNHAGL 314
           LF  M +                                 +KPD +TFV +L AC +AGL
Sbjct: 429 LFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGL 488

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           +D G  YF SM+ D+GI    +HYTCMV LLGR G L +AV LI ++PF+P   ++  LL
Sbjct: 489 LDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALL 548

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
            AC +H  ++L   +A  +  + P + A  +V L+N+YA  K+WD+VA +R +MK   V 
Sbjct: 549 GACVIHNDIELGRISAQRVLEMEPQDKA-THVLLSNMYATAKRWDNVASVRKNMKRKGVK 607

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SWIE    VH F  GD  HPE+  I+  L+ L  + K AGY+P+    L  V +E
Sbjct: 608 KEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDE 667

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            KE+LL  HSE+LA++FG+I+ P G+PIR+ KNLR+C DCH A K IS + +REI+VRD 
Sbjct: 668 EKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDI 727

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHF++G CSCGDYW
Sbjct: 728 NRFHHFQEGLCSCGDYW 744



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 179/336 (53%), Gaps = 10/336 (2%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D+ ++NI+L+ + + SD +  A   F  +P ++T S+ T+I G+ +     +A +LF+ +
Sbjct: 72  DLFAWNILLN-MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 97  P----EKNSVSWSAMISGYI--ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKV 148
                E N   ++ ++   +  +CG+L   +   +FK+    +    TA+I  Y   G+V
Sbjct: 131 HREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRV 190

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D+A ++FD +  K++V+W  M+  + EN   ++ LKL   M  +G +PN  + +SV   C
Sbjct: 191 DVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
             L +  +GK VH    KS    D      L+ +Y K GD++DA + F EI +KDV+ W+
Sbjct: 251 LGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWS 310

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            MI+ YAQ  + ++A+ +F +M+   + P+  TF ++L AC     ++LG Q     V  
Sbjct: 311 FMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQ-IHCHVIK 369

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            G+ +       ++D+  + G++  +++L  + P +
Sbjct: 370 IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHR 405



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 13/249 (5%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E+ K      + AW  +++ Y+K   +  A KLFDEMP +N +++  +I GY E+    +
Sbjct: 63  EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLE 122

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            ++L   +   G   N    +++L         +LG  +H  +FK     +    T LI 
Sbjct: 123 AIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALID 182

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y  CG ++ A ++F  I  KD+V+W  M++ +A++   ++AL+LF +M+  G KP++ T
Sbjct: 183 AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFT 242

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHY--TCMVDLLGRAGKLVEAV 355
           F ++  AC       LG++ FD   + +G A K     D Y    ++DL  ++G + +A 
Sbjct: 243 FASVFKAC-------LGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 356 DLIKKMPFK 364
              +++P K
Sbjct: 296 RAFEEIPKK 304



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 54/314 (17%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF----QRLPIKDTASWN 74
           + G + DA+  F++IP+ DV+ ++ M++     SD    A + F    Q L + +  ++ 
Sbjct: 287 KSGDIDDARRAFEEIPKKDVIPWSFMIA-RYAQSDQSKEAVEMFFQMRQALVLPNQFTFA 345

Query: 75  TMISGFVQKK-----NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +++      +     N      + + +     VS +A++  Y +CG+++ ++ELF  +P 
Sbjct: 346 SVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVS-NALMDVYAKCGRMENSMELFAESPH 404

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           ++ V W  +I G+++ G                                 E  L+L   M
Sbjct: 405 RNDVTWNTVIVGHVQLGD-------------------------------GEKALRLFLNM 433

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +   ++    + SS L  C+ L++L+ G Q+H L  K     D      ++S     G L
Sbjct: 434 LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKP----DKLTFVGVLSACANAGLL 489

Query: 250 EDACKLFLEIQRKDVVT-----WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           +     F  + +   +      +  M+    + G  +KA++L D++     +P  + + A
Sbjct: 490 DQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP---FQPSVMVWRA 546

Query: 305 LLLACNHAGLVDLG 318
           LL AC     ++LG
Sbjct: 547 LLGACVIHNDIELG 560



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 37/251 (14%)

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP---NASSLSSVLLGCSHLSSLQLGKQ 219
           +V  N  +  +    ++    KL +  +G  + P   N+ + ++ L  C        GK 
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQEFVG-HVSPSEFNSHAYANALQDCIQKDEPSRGKG 59

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  + K   C D  A   L++MY K   L DA KLF E+  ++ +++  +I GYA+  +
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALL-----LACN------HAGLVDLGIQ----YFDS 324
             +A+ LF ++  EG + +   F  +L       C       HA +  LG +       +
Sbjct: 120 FLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTA 179

Query: 325 MVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQ 366
           +++ Y +  + D                +T MV          EA+ L  +M    FKP 
Sbjct: 180 LIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPN 239

Query: 367 PAIFGTLLSAC 377
              F ++  AC
Sbjct: 240 NFTFASVFKAC 250


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/539 (37%), Positives = 316/539 (58%), Gaps = 42/539 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNS--VSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           N +I  + +   +A+AR +F  + EKN+  +SW+ +I  Y + G   +A+ LFK   ++ 
Sbjct: 63  NLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEG 122

Query: 132 VVA---------------------------------------WTAMISGYMKFGKVDLAE 152
           V+A                                        T++++ + K   VD A 
Sbjct: 123 VIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAAR 182

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
            +FD +P KNLVTWN M+A Y +N   +  +++ R M   G++P+A +  +++  C+ L+
Sbjct: 183 AVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALA 242

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +   G+ VH  +  S +  D    T ++  Y KCG L++A  +F  + +K+ VTW+A+++
Sbjct: 243 AHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILA 302

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
            YAQ+G   +A+ L+ +M   G++ + ITF+ LL AC+HAG    G+ YF SM+ D+G+ 
Sbjct: 303 AYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVV 362

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
              +HY  ++DLLGR+G+L  + DLI  MP++P  + +  LL ACR+H  +D     A  
Sbjct: 363 PVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAEL 422

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           ++ L+P + +G Y+ L+N+Y++  + D+  R R +M+   + K PG S IEV   VHEF 
Sbjct: 423 IYELDPED-SGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFM 481

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           +  ++HP+L  IH +++ L+ R+K AGYV D+   L  V EE KEQLL +HSE+LAIAFG
Sbjct: 482 AAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFG 541

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI  P GT + + KNLRVC DCH A K IS +  R+I+VRD  RFHHF++G CSCGDYW
Sbjct: 542 LISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 25/183 (13%)

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           R   S+   +L  C+   +L  GK+VH  + K     D      LI MY KCG + +A  
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 255 LFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 310
           +F +IQ K  DV++WN +I  Y Q+G G++AL LF  M  EG+  + +T +  + AC   
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 311 ---------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
                    HA  VD  ++  D+MV            T +V++ G+   +  A  +   +
Sbjct: 141 PSEEEGRIVHAIAVDKRLES-DTMVG-----------TSLVNMFGKCKNVDAARAVFDSL 188

Query: 362 PFK 364
           P K
Sbjct: 189 PRK 191


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 322/583 (55%), Gaps = 35/583 (6%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------------------LLN 51
            NS+++ F+     +++A  +FD + + D++S+N M+S                    L N
Sbjct: 515  NSLISMFS-SFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 573

Query: 52   SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              +              D   W   I G V K  +           + N    + +++ Y
Sbjct: 574  ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL-----------DSNVCICNTLLTLY 622

Query: 112  IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE---MPTKNLVTWNA 168
             E G+ + A  +F+    + +++W +M++ Y++ GK     K+  E   M   + VTWNA
Sbjct: 623  SEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNA 682

Query: 169  MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
            +I G+ EN    + +K  +++   GI  N  ++ S L   ++L+ L+ G+Q+H LV K  
Sbjct: 683  LIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLG 741

Query: 229  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
               D       + MY KCG++ D  K+  +   +  ++WN +IS +A+HG  +KA   F 
Sbjct: 742  FESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFH 801

Query: 289  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
            +M   G KPD +TFV+LL ACNH GLVD G+ Y+DSM  ++G+    +H  C++DLLGR+
Sbjct: 802  EMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRS 861

Query: 349  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            G+L  A   IK+MP  P    + +LL+ACR+H  L+LA   A +L  L+P++ +  YV  
Sbjct: 862  GRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA-YVLY 920

Query: 409  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
            +N+ A   KW+DV  +R  M  NN+ K P  SW+++   VH F  G++ HP+   I  KL
Sbjct: 921  SNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKL 980

Query: 469  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
             EL K  K AGYVPD  FALH + EE KE  L  HSE+LA+AFGLI  P  + +R+FKNL
Sbjct: 981  GELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNL 1040

Query: 529  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            RVCGDCH   K++S I  R+I++RD  RFHHF  G CSCGDYW
Sbjct: 1041 RVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 167/364 (45%), Gaps = 82/364 (22%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           +V+  ++  AR++F  MPE++ VSW+AM+SGY + G+ +KA  LF       V A  A++
Sbjct: 75  YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALV 134

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             + K GK++ A  LF  M  +++V+WNAMI GY    +A+D   + R M+  G+ P+  
Sbjct: 135 DFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCY 194

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVF-------------------------------KSP 228
           +L SVL   +    L +  Q+H ++                                K  
Sbjct: 195 TLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGM 254

Query: 229 LCKD---TTAL-------------TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           L KD   +TAL               LI MY K G++EDA + F E++ K+V++W ++IS
Sbjct: 255 LKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLIS 314

Query: 273 GYAQHGKG---------------------------------EKALRLFDKMKDEGMKPDS 299
           GYA+HG G                                 E+A+ LF +M   G++P+ 
Sbjct: 315 GYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNG 374

Query: 300 ITFVALLLACNHAG-LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
               +L+ AC+ +G + D G Q    +V   GI       T +V   G  G +  A  L 
Sbjct: 375 FMVASLITACSRSGYMADEGFQVHGFVVKT-GILGDVYVGTALVHFYGSIGLVYNAQKLF 433

Query: 359 KKMP 362
           ++MP
Sbjct: 434 EEMP 437



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 187/415 (45%), Gaps = 64/415 (15%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           V  N  L  F  + GK++DA  LF  + + DVVS+N M+    +   +DD    F    R
Sbjct: 127 VKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLR 186

Query: 65  ----------------------LPIKDT----------ASWNT----MISGFVQKKNMAK 88
                                 L I +            S++     +I+ + +  ++  
Sbjct: 187 GGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRS 246

Query: 89  ARDLFLAMPEKNSVSWSAMISG----------------YIECGQLDKAVELFKVAPVKSV 132
           A+DL   M +K+  S +A+I+G                Y + G+++ A   F     K+V
Sbjct: 247 AKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNV 306

Query: 133 VAWTAMISGYMK--FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           ++WT++ISGY K  +G +  A  +FDEM  +N  +W+ M++GYV     E+ + L   M 
Sbjct: 307 ISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMW 366

Query: 191 GLGIRPNASSLSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           GLG+ PN   ++S++  CS    +   G QVH  V K+ +  D    T L+  Y   G +
Sbjct: 367 GLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 426

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            +A KLF E+   +VV+W +++ GY+  G   + L ++ +M+ EG+  +  TF  +  +C
Sbjct: 427 YNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 486

Query: 310 NHAGLVD---LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              GL++   LG Q    ++  YG          ++ +      + EA  +   M
Sbjct: 487 ---GLLEDQVLGYQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 537



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 57/340 (16%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSC---------------ILLNSDDVVAAFDFFQ 63
           + G L+ A++L   + + D+ S   +++                +   S ++  A   F 
Sbjct: 240 KNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFD 299

Query: 64  RLPIKDTASWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            +  K+  SW ++ISG+ +    +MA AR +F  M  +N  SWS M+SGY+  G  ++AV
Sbjct: 300 EMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAV 359

Query: 122 ELF----------------------------------------KVAPVKSVVAWTAMISG 141
            LF                                        K   +  V   TA++  
Sbjct: 360 GLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHF 419

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y   G V  A+KLF+EMP  N+V+W +++ GY ++    + L + + M   G+  N ++ 
Sbjct: 420 YGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF 479

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           ++V   C  L    LG QV   + +       +    LISM+     +E+AC +F  +  
Sbjct: 480 ATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNE 539

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            D+++WNAMIS YA HG   ++LR F  M+    + +S T
Sbjct: 540 CDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 579



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 135/263 (51%), Gaps = 15/263 (5%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           V  A   F+ +P  +  SW +++ G+    N  +  +++  M ++    N  +++ + S 
Sbjct: 426 VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS- 484

Query: 111 YIECGQLDKAVELFKV-------APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
              CG L+  V  ++V           SV    ++IS +  F  V+ A  +FD M   ++
Sbjct: 485 --SCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDI 542

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           ++WNAMI+ Y  +    + L+    M  L    N+++LSS+L  CS + +L+ G+ +H L
Sbjct: 543 ISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGL 602

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K  L  +      L+++Y + G  EDA  +F  +  +D+++WN+M++ Y Q GK    
Sbjct: 603 VVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDG 662

Query: 284 LRLFDKMKDEGMKPDSITFVALL 306
           L++  ++   G KPD +T+ AL+
Sbjct: 663 LKILAELLQMG-KPDRVTWNALI 684



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G  +H  +  +    D    T LI  Y K GD+  A  +F  +  + VV+W AM+SGY+Q
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH--------AGLVDLGIQYFDSMVND 328
           +G+ EKA  LF  M+  G+K +    V     C            +++  +  +++M+  
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANH-ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGG 167

Query: 329 YGIAAKPDHYTCMVDLLGRAG 349
           Y +    D   CM   + R G
Sbjct: 168 YAVQGFADDSFCMFRSMLRGG 188


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 317/559 (56%), Gaps = 35/559 (6%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +F+ IP P +  YN ++S +  +SD +  AF  +  +    T   N+          
Sbjct: 55  AFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFT-------- 106

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                 LF A     S  W       ++ G    A  L  + P        ++++ Y K+
Sbjct: 107 ---FPSLFKACA---SHPW-------LQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKY 153

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW----------AEDGLKLLRMMIGLG-- 193
           GK+ ++  LFD++   +L TWN M+A Y +++           A+  L+ L +   +   
Sbjct: 154 GKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLS 213

Query: 194 -IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            I+PN  +L +++  CS+L +L  G   H  V ++ L  +    T L+ MY KCG L  A
Sbjct: 214 QIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLA 273

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
           C+LF E+  +D   +NAMI G+A HG G +AL L+  MK E + PD  T V  + AC+H 
Sbjct: 274 CQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHG 333

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G++ F+SM   +G+  K +HY C++DLLGRAG+L EA + ++ MP KP   ++ +
Sbjct: 334 GLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRS 393

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL A ++H  L++ E A  +L  L P   +G YV L+N+YA++ +W+DV R+R+ MK++ 
Sbjct: 394 LLGAAKLHGNLEMGEAALKHLIELEP-ETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHG 452

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           V K+PG+S +E+   +HEF +GD+ HP    I+ K+ E+ +R+   G+ P     L  V 
Sbjct: 453 VDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVE 512

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE KE  L +HSE+LAIAF LI      PIR+ KNLRVCGDCH  TK ISA  +R+IIVR
Sbjct: 513 EEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVR 572

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHFKDG+CSC DYW
Sbjct: 573 DRNRFHHFKDGSCSCLDYW 591



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 37/299 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  GKL  ++ LFD+I +PD+ ++N ML+    ++  V  +  F      +D
Sbjct: 144 NSLLNFYAKY-GKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSF------ED 196

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV----ELFK 125
                  +  F          D+ L+  + N V+  A+IS     G L +       + +
Sbjct: 197 ADMSLEALHLFC---------DMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLR 247

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
                +    TA++  Y K G ++LA +LFDE+  ++   +NAMI G+  +      L+L
Sbjct: 248 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALEL 307

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP------- 238
            R M    + P+ +++   +  CSH   ++ G +    +F+S   K    + P       
Sbjct: 308 YRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLE----IFES--MKGVHGMEPKLEHYGC 361

Query: 239 LISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGK---GEKALRLFDKMKDE 293
           LI +  + G L++A +   ++  K + + W +++     HG    GE AL+   +++ E
Sbjct: 362 LIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPE 420


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 325/586 (55%), Gaps = 21/586 (3%)

Query: 2   NVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDD 54
           NV T   WN+VL+G ++    R  L     +  +  +PD  + + +L  +    LL    
Sbjct: 256 NVAT---WNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 312

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  F F +     D  +   ++  + +   +  A+ +  A+  +N  +W+++++GY   
Sbjct: 313 EIHCF-FLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANA 371

Query: 115 GQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTW 166
           G+ D A+EL ++         +  W  +I+GY   G+   A  L  ++     T N+V+W
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 431

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I+G   N   ED       M   G++P+  ++S +L  C+ L+  + GK++H    +
Sbjct: 432 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T LI MY K G L  A  +F  IQ+K++V  NAM++G A HG+G +A+ L
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M + G+KPDSITF ALL AC   GLV  G +YFDSM   YG+    ++Y CMVDLL 
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLA 611

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R G L EA+D I++ P  P  + +G LL+ C +H  L LAE AA NLF L P N+A  Y+
Sbjct: 612 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSAN-YL 670

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            + N+Y   + +D+   ++ +MK   V   PG+SWI++   +H F    + HPE   I+E
Sbjct: 671 LMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYE 730

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRVF 525
           +L  L  ++K AGYVPD     + V EE KE+LLL H+EKLAI +GLI+      P+RV 
Sbjct: 731 ELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVM 790

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KN R+C DCH   K+IS++  R+II+RD  RFHHF DG CSC DYW
Sbjct: 791 KNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 4/200 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD----LAEKLFDEMPTKNLVTW 166
           Y E   +  A  +       SVV W A+++   + G VD    LA ++    P  N+ TW
Sbjct: 201 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATW 260

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N +++G   +    + L ++  M+  G+RP+A+++SS+L   ++   L+ G ++H    +
Sbjct: 261 NTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLR 320

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           + L  D    T L+ MY KCG L+ A K+   ++ +++ TWN++++GYA  G+ + AL L
Sbjct: 321 NQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALEL 380

Query: 287 FDKMKDEGMKPDSITFVALL 306
            + MK   + PD  T+  L+
Sbjct: 381 VELMKKNRLDPDITTWNGLI 400



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 52/307 (16%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMP---TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A++    + G+     +L  E      K+ V WN  +A   E    ++ + + R M   G
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP--LISMYCKCGDL-- 249
           +  +  + + VL  C    +L+ G+ VH    K  L  D   L P  L  MY +  D+  
Sbjct: 152 VPADGYTCARVLHACGRAGALREGRAVHAYALK--LALDAHPLVPGFLAGMYAENADVAA 209

Query: 250 -----------------------------EDACKLFLEIQRK----DVVTWNAMISGYAQ 276
                                        +DA +L   + R     +V TWN ++SG ++
Sbjct: 210 ATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSR 269

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG+  +AL +   M  +G++PD+ T  +LL +  + GL+  G++     + +     +PD
Sbjct: 270 HGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRN---QLEPD 326

Query: 337 HY--TCMVDLLGRAGKL---VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
            Y  T +VD+  + G+L    + +D ++        ++     +A R    L+L E    
Sbjct: 327 VYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKK 386

Query: 392 NLFNLNP 398
           N   L+P
Sbjct: 387 N--RLDP 391


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/568 (38%), Positives = 321/568 (56%), Gaps = 26/568 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSC---------------ILLNSDDVVAAFDFFQRL 65
           G ++DA  LF+++P  D +S+  +L+                 +   D +      F  L
Sbjct: 52  GLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACL 111

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELF 124
            +K  A    M  G        +    F+  P   + V  S+++  Y +CG  D    +F
Sbjct: 112 -VKACAILGAMKQG-------KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVF 163

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                K+ ++WTAMISGY + G+   A +LF +MP KNL++W A+I+G V++    D   
Sbjct: 164 DSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFY 223

Query: 185 LLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           L   M   GI   +   LSS++   ++L+ L LGKQ+H LV              L+ MY
Sbjct: 224 LFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMY 283

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KC D+  A K+F  + ++D+V+W ++I G AQHG  E+AL L+++M   G+KP+ +TFV
Sbjct: 284 AKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFV 343

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
            L+ AC+H GLV  G  +F+SM+ DYGI     HYTC++DLL R+G L EA +LIK MPF
Sbjct: 344 GLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPF 403

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           KP  A +  LLSAC  H+   +    A +L +L P + +  Y+ L+NIYA+   W+ V++
Sbjct: 404 KPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPS-TYILLSNIYASAAMWESVSK 462

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  M    V K PGYS I +G     F +G+  HP    I   L+EL+  MK  GY+PD
Sbjct: 463 VRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPD 522

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
               LH + ++ KE+ L +HSE+LA+A+GL+K   G  + + KNLRVCGDCH   K+IS 
Sbjct: 523 TSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISI 582

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I KREI+VRD  R+HHFKDG CSC ++W
Sbjct: 583 IVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 59/338 (17%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFFQRLPIKDTASW 73
           A ++GK   A  +   +   DVV  +++     C L +   VV     F  +  K++ SW
Sbjct: 120 AMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVV-----FDSISSKNSISW 174

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
             MISG+ Q      A  LF  MP KN +SW+A+ISG ++ G    +  LF         
Sbjct: 175 TAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGID 234

Query: 126 -VAPV-------------------------------KSVVAWTAMISGYMKFGKVDLAEK 153
            V P                                 S+    A++  Y K   V  A+K
Sbjct: 235 IVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKK 294

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F  M  +++V+W ++I G  ++  AE+ L L   M+  G++PN  +   ++  CSH+  
Sbjct: 295 IFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGL 354

Query: 214 LQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWN 268
           +  G+     + K    +P  +  T L  L+S   + G LE+A  L   +  K D  TW 
Sbjct: 355 VSKGRYFFNSMIKDYGINPSLQHYTCLLDLLS---RSGHLEEAENLIKAMPFKPDEATWA 411

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 305
           A++S    H      +R+ D +    +KP D  T++ L
Sbjct: 412 ALLSACNHHRNTLIGIRVADHLLS--LKPEDPSTYILL 447



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRP 196
           +I+ Y K G +  A  LF+++P ++ ++W +++    + +     L +   M    G++P
Sbjct: 44  LINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQP 103

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +    + ++  C+ L +++ GKQVH     SP+  D    + L+ MY KCG  +    +F
Sbjct: 104 DHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVF 163

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
             I  K+ ++W AMISGYAQ G+   A++LF KM
Sbjct: 164 DSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM 197



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 31/197 (15%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S L   L  C+   S  +GK++H  + K+ + +  +    LI+MY KCG ++DA  LF +
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDL 317
           +  +D ++W ++++   Q       L +F  M K +G++PD   F  L+ AC   G +  
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 318 GIQYF---------------DSMVNDYGIAAKPD---------------HYTCMVDLLGR 347
           G Q                  S+V+ Y     PD                +T M+    +
Sbjct: 124 GKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 348 AGKLVEAVDLIKKMPFK 364
           +G+ ++A+ L +KMP K
Sbjct: 184 SGRKLDAIQLFQKMPVK 200


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/473 (42%), Positives = 287/473 (60%), Gaps = 4/473 (0%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++AG+AK R +  +A+ LFD +P  D+VS+N ML+    N + +     FF+ +  +D
Sbjct: 31  NAMVAGYAKNR-QFDEARRLFDAMPAKDLVSWNSMLTGYTRNGE-MRLGLQFFEEMAERD 88

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             SWN M+ GFV+  ++  + + F  +P  N+VSW  M+ G+   G++ +A  LF   P+
Sbjct: 89  VVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPI 148

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           ++VVAW AMI+ Y++   VD A  LF EMP KN ++W  +I GYV     ++  +LL  M
Sbjct: 149 RNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 208

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
                +P+ S+ +  L  C+HL++LQ+GKQ+HQLV KS    D      LI+MY KCG +
Sbjct: 209 PYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSI 267

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             A  LF +I   DVV+WN++I+ YA +G G +AL+LF KM+ EG+ PD +TFV +L AC
Sbjct: 268 SSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSAC 327

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
           +H GL+D G++ F  MV  Y I    +HY CMVDLLGRAG+L EA  L++ M       I
Sbjct: 328 SHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGI 387

Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
           +G LL ACR+H  L+LA+FAA  L    P   +  YV L+N+ A   +WD+VAR+R  MK
Sbjct: 388 WGALLGACRIHGNLELAKFAAEKLLEFEPHKTSN-YVLLSNMQAEAGRWDEVARVRRLMK 446

Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
           E    K PG+SWIE+   VH F S D  HP  V +   L+ L   M+  G +P
Sbjct: 447 EKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSLTAHMRNTGDMP 499



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 152/289 (52%), Gaps = 15/289 (5%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           MI+ + +   +AKAR+LF  +P K N V  +AM++GY +  Q D+A  LF   P K +V+
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           W +M++GY + G++ L  + F+EM  +++V+WN M+ G+VE        +    +     
Sbjct: 61  WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI----- 115

Query: 195 RPNASSLSSVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            PN +++S V + C      + GK  +  +L  + P+ ++  A   +I+ Y +   +++A
Sbjct: 116 -PNPNTVSWVTMLCGF---ARFGKIAEARRLFDQMPI-RNVVAWNAMIAAYVQNCHVDEA 170

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF+E+  K+ ++W  +I+GY + GK ++A +L ++M     KPD  TF   L +C H 
Sbjct: 171 ISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHL 229

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             + +G Q    +V   G A        ++ +  + G +  A  L K +
Sbjct: 230 AALQVGKQ-LHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI 277


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/580 (38%), Positives = 333/580 (57%), Gaps = 49/580 (8%)

Query: 38  VVSYNIMLSCILLNS--------DDVVAAFDFFQRLPI--KDTASWNTMISGFVQKKNMA 87
           VV Y   +S  L NS         DV  A+  F  +PI  +D  SWN++ISGF       
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 88  KARDLFLAMP-------EKNSVSWSAMISGYIECGQLDKAVELFKVAP--------VKSV 132
           +A   F  M        E N V+  A++    E G ++ +  + +            K V
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM--- 189
           V  TA++  + + G + LA ++FD +  KN+V W+AMIAGY + S  E+ L+L R M   
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 190 ---IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
              +G+ ++PNA +L SV+  CS L + +    +H+    + L +D    + LI M  KC
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 247 GDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           GD+E   ++F E+    + VV+W++MI     HG+G++AL LF +M+  G +P+ IT+++
Sbjct: 431 GDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYIS 490

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+HAGLV+ G   F+SM  DYG++    HY C+VDLLGRAG L EA ++I  MP K
Sbjct: 491 VLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
              A++G+LL+AC +H    L E     + +L+ +N+ G +V LAN+Y    +WDDV R+
Sbjct: 551 ADLALWGSLLAACHLHGNCKLGEIVEKKILSLD-SNSVGHHVLLANMYEDAGRWDDVVRM 609

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPD 483
           R+ ++ + + K+PG S+IE+G  V+ F + DR HPE   I+++L  L++R+ K A YV  
Sbjct: 610 RVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVT- 668

Query: 484 LEFALHAVGEEVKEQLLL--FHSEKLAIAFGLIKVP----------LGTPIRVFKNLRVC 531
            E  L+    ++   +    +HSE+LAIAFGLI +             TPIR+ KNLRVC
Sbjct: 669 -ETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVC 727

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH  TK +S +  RE+IVRD  RFHHF+DG CSCGDYW
Sbjct: 728 RDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 164/371 (44%), Gaps = 57/371 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K T +WNS++A  A Q    + A   F ++    V S N     +L       A     +
Sbjct: 16  KDTFHWNSLIAKNATQ--NPQTALTFFTRMQAHAVPSNNFTFPALL------KACAALRR 67

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            LP     ++ T          +  A D F A         +A++  Y +CG    A ++
Sbjct: 68  LLPTLQVHAYLT---------RLGLAADRFSA---------AALVDAYGKCGHAYYAAQV 109

Query: 124 FKVAPVKSV--VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           F   P  SV  V+WTA+IS Y   G VD A   F  M  + +  W              D
Sbjct: 110 FDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRM--RWMRGW--------------D 153

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           G +      G+ +    + +S+  +GC   + L+ G  VH LV K      T     ++ 
Sbjct: 154 GSEC----CGVDVVSLGALVSACAVGCGS-NCLRRGSAVHGLVVKYGFGVSTHLGNSMVH 208

Query: 242 MYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MK 296
           MY  C D+  A ++F  + I+++DVV+WN++ISG+  +G+ E+ALR F+ M  EG   ++
Sbjct: 209 MYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVE 268

Query: 297 PDSITFVALLLACNHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           P+ +T +ALL +C   G V+      +Y  S  +   +A      T ++D+  R G L  
Sbjct: 269 PNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLAL 328

Query: 354 AVDLIKKMPFK 364
           A ++   +  K
Sbjct: 329 AREIFDGVEGK 339



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           I  KD   WN++I+  A     + AL  F +M+   +  ++ TF ALL AC     +   
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +Q   + +   G+AA       +VD  G+ G    A  +  +MP
Sbjct: 72  LQ-VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMP 114


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/519 (37%), Positives = 304/519 (58%), Gaps = 9/519 (1%)

Query: 61   FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS--GYIEC 114
             F  +P +D  S+N +I+ +   +  A    LF  M     ++  + ++ M+S  G +  
Sbjct: 491  LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550

Query: 115  GQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
              + K +  +L  +      +   A+I  Y K G +D A+  F     K+ ++W A+I G
Sbjct: 551  VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 610

Query: 173  YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            YV+N   E+ L+L   M   G+RP+ ++ SS++   S L+ + LG+Q+H  + +S     
Sbjct: 611  YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 670

Query: 233  TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
              + + L+ MY KCG L++A + F E+  ++ ++WNA+IS YA +G+ + A+++F+ M  
Sbjct: 671  VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 730

Query: 293  EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             G  PDS+TF+++L AC+H GL D  ++YF  M + Y I+   +HY C++D LGR G   
Sbjct: 731  CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 790

Query: 353  EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
            +   ++ +MPFK  P I+ ++L +CR+H   +LA  AA  LF + P +A   YV L+NIY
Sbjct: 791  QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATP-YVILSNIY 849

Query: 413  AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
            A   +W+D A ++  M++  V K  GYSW+E+   ++ F S D   P +  I ++L  L 
Sbjct: 850  ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 909

Query: 473  KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            K M   GY PD+  ALH V  E+K + L +HSE+LAIAF L+  P GTPIR+ KNL  C 
Sbjct: 910  KEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACL 969

Query: 533  DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            DCH   K IS I  R+IIVRD+ RFHHFKDG CSCGDYW
Sbjct: 970  DCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 180/384 (46%), Gaps = 27/384 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +    W  ++   A   G+  DA  LF  +    V+   + ++ +L      V +   F 
Sbjct: 317 RNATTWTIMMRAHAAA-GRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFA 375

Query: 64  RLPIKDTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                DT  +  NT++  + +   +A AR +FL M +K++V+++AM+ G  + G   +A+
Sbjct: 376 IKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQAL 435

Query: 122 ELF-----------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +LF                       +   V +V    +++  Y K   +D   +LFDEM
Sbjct: 436 QLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM 495

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P ++ V++N +IA Y  N  A   L+L R M  LG        +++L     L  + +GK
Sbjct: 496 PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGK 555

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  +    L  +      LI MY KCG L+ A   F     K  ++W A+I+GY Q+G
Sbjct: 556 QIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNG 615

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
           + E+AL+LF  M+  G++PD  TF +++ A +   ++ LG Q    ++   G  +     
Sbjct: 616 QHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSG 674

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMP 362
           + +VD+  + G L EA+    +MP
Sbjct: 675 SVLVDMYAKCGCLDEALRTFDEMP 698



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           +  G L +A  +F   P K++ +   ++S Y   G +  A+ LF   P +N  TW  M+ 
Sbjct: 268 LSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMR 327

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV--LLGCS----HLSSLQLGKQVHQLVF 225
            +       D L L R M+G G+ P+  ++++V  L GC+    H  +++ G   H  V 
Sbjct: 328 AHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC 387

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
            +           L+  YCK G L  A ++FLE+  KD VT+NAM+ G ++ G   +AL+
Sbjct: 388 NT-----------LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQ 436

Query: 286 LFDKMKDEG 294
           LF  M+  G
Sbjct: 437 LFAAMRRAG 445



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 146/355 (41%), Gaps = 62/355 (17%)

Query: 37  DVVSYNIMLSC-ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           DV++Y + L    LL+S  +  A   F ++P K+  S N ++S +    ++  A+ LFL+
Sbjct: 254 DVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLS 313

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVAW-------------- 135
            P +N+ +W+ M+  +   G+   A+ LF+      V P +  V                
Sbjct: 314 SPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHP 373

Query: 136 --------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
                           ++  Y K G +  A ++F EM  K+ VT+NAM+ G  +      
Sbjct: 374 FAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQ 433

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL----- 236
            L+L   M   G   +                      +H L +     + T+ L     
Sbjct: 434 ALQLFAAMRRAGYSRHP---------------------LHLLQYSHSRSRSTSVLNVFVN 472

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             L+  Y KC  L+D  +LF E+  +D V++N +I+ YA +      LRLF +M+  G  
Sbjct: 473 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 532

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
              + +  +L        V +G Q    +V   G+A++      ++D+  + G L
Sbjct: 533 RQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGML 586



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 140/351 (39%), Gaps = 68/351 (19%)

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           G  +L   + LG+R   S LSS   G  H +     +  H+ +F         +L  ++S
Sbjct: 252 GFDVLTYRLNLGLR---SLLSS---GHLHRARAMFDQMPHKNIF---------SLNLILS 296

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y   GDL  A  LFL    ++  TW  M+  +A  G+   AL LF  M  EG+ PD +T
Sbjct: 297 AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVT 356

Query: 302 FVAL--LLACNHAGLVDLGIQY-FDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVD 356
              +  L  C    L    I++  D+ V           + C  ++D   + G L  A  
Sbjct: 357 VTTVLNLPGCTVPSLHPFAIKFGLDTHV-----------FVCNTLLDAYCKHGLLAAARR 405

Query: 357 LIKKMPFKPQPAIFGTLLSACR---VHKRLDLAEFAAM----------NLFNLNPANAAG 403
           +  +M  K     +  ++  C    +H +  L  FAAM          +L   + + +  
Sbjct: 406 VFLEMHDK-DAVTYNAMMMGCSKEGLHTQA-LQLFAAMRRAGYSRHPLHLLQYSHSRSRS 463

Query: 404 CYV-------QLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIE-VGTVVHEF 451
             V        L + Y+     DD+ R+   M E + V     +  Y+W +   TV+  F
Sbjct: 464 TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF 523

Query: 452 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           R   +     +    ++      + +AG +PD+      +G+++  QL+L 
Sbjct: 524 REMQK-----LGFDRQVLPYATMLSVAGSLPDVH-----IGKQIHAQLVLL 564


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 319/563 (56%), Gaps = 26/563 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           + S++ GF    G   DA  LF ++ +  V++ N  ++ +L             +   ++
Sbjct: 93  YTSLIDGFV-SFGSYTDAINLFCQMVRKHVLADNYAVTAML-------------KACVLQ 138

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                   + G V K  +   R + L + E            Y +CG L+ A ++F   P
Sbjct: 139 RALGSGKEVHGLVLKSGLGLDRSIALKLVEL-----------YGKCGVLEDARKMFDGMP 187

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + VVA T MI      G V+ A ++F+EM T++ V W  +I G V N     GL++ R 
Sbjct: 188 ERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFRE 247

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G+ PN  +   VL  C+ L +L+LG+ +H  + K  +  +      LI+MY +CGD
Sbjct: 248 MQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGD 307

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           +++A  LF  ++ KDV T+N+MI G A HGK  +A+ LF +M  E ++P+ ITFV +L A
Sbjct: 308 IDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNA 367

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H GLVDLG + F+SM   +GI  + +HY CMVD+LGR G+L EA D I +M  +    
Sbjct: 368 CSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDK 427

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           +  +LLSAC++HK + + E  A  L + +    +G ++ L+N YA++ +W   A +R  M
Sbjct: 428 MLCSLLSACKIHKNIGMGEKVA-KLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKM 486

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           ++  ++K PG S IEV   +HEF SGD  HPE   I++KL+EL    K  GY+P  E AL
Sbjct: 487 EKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVAL 546

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
           H + +E KE  L  HSE+LAI +GL+     T +RV KNLR+C DCH   K I+ I +R+
Sbjct: 547 HDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRK 606

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I+VRD  RFHHF++G CSC DYW
Sbjct: 607 IVVRDRNRFHHFENGECSCKDYW 629



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 157/383 (40%), Gaps = 100/383 (26%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y +   +D A++LF+     +V  +T++I G++ FG    A  LF +M  K+++  N   
Sbjct: 69  YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADN--- 125

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
                                        +++++L  C    +L  GK+VH LV KS L 
Sbjct: 126 ----------------------------YAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157

Query: 231 KDTTALTPLISMYCKCGDLEDACKL-------------------------------FLEI 259
            D +    L+ +Y KCG LEDA K+                               F E+
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEM 217

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG- 318
             +D V W  +I G  ++G+  + L +F +M+ +G++P+ +TFV +L AC   G ++LG 
Sbjct: 218 GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGR 277

Query: 319 ------------IQYF--DSMVNDYGIAAKPDH---------------YTCMVDLLGRAG 349
                       +  F   +++N Y      D                Y  M+  L   G
Sbjct: 278 WIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHG 337

Query: 350 KLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFN-LNP-ANAA 402
           K +EAV+L  +M     +P    F  +L+AC     +DL    F +M + + + P     
Sbjct: 338 KSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHY 397

Query: 403 GCYVQ-LANIYAAMKKWDDVARI 424
           GC V  L  +    + +D + R+
Sbjct: 398 GCMVDILGRVGRLEEAFDFIGRM 420



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           + +H    K+   +D      L+ +YCK   ++ A KLF   Q  +V  + ++I G+   
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G    A+ LF +M  + +  D+    A+L AC     +  G +    +V   G+      
Sbjct: 104 GSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSG-KEVHGLVLKSGLGLDRSI 162

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMP 362
              +V+L G+ G L +A  +   MP
Sbjct: 163 ALKLVELYGKCGVLEDARKMFDGMP 187


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/435 (45%), Positives = 276/435 (63%), Gaps = 2/435 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           MI+ Y + G++  A+  FD  P +N  +WNAMIAGY +N   +  L L R M   G R +
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +  + +  C+ LS+L  G+ +H +   + L       T +++MY KCG+L+DA  +F 
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            I+ K++++W+ MI+ + Q+G  ++AL  F  M  +G+ PD++TF ++L AC+HAGL + 
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G  +FD +V+D+GI    DH+ CMVDLLGR+G+L+EA +L++ MPF P    + TLL+AC
Sbjct: 181 GFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAAC 240

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           RVHK ++  + AA  L  L  +   G YV L+NI+AA     + A++R  M+   V K P
Sbjct: 241 RVHKSVERGKRAAEVLLELT-SEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARGVRKKP 299

Query: 438 GYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           G+S IE+    HEF +G++  HP+   I E+LK L   MK  GYVPD    L  V E+ K
Sbjct: 300 GWSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDEK 359

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E LL FHSEKLAIA GLI  P GT +RV KNLRVC DCH ATK+IS I  R+IIVRD  R
Sbjct: 360 ESLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLNR 419

Query: 557 FHHFKDGTCSCGDYW 571
           FHH ++G CSCGDYW
Sbjct: 420 FHHTENGVCSCGDYW 434



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 53/257 (20%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---------- 125
           MI+ + +   M  A+  F A P +NS SW+AMI+GY + G    A+ LF+          
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 126 ----VAPVKSVVAWTAMISG-------------------------YMKFGKVDLAEKLFD 156
               VA + +    +A+++G                         Y K G +D A  +F 
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
            +  KNL++W+ MI  +V+N   +  L     M   G+ P+A +  S+L  CSH    + 
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--------KDVVTWN 268
           G       F   L      +TP +  +    DL       LE +          D VTWN
Sbjct: 181 G------FFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWN 234

Query: 269 AMISGYAQHGKGEKALR 285
            +++    H   E+  R
Sbjct: 235 TLLAACRVHKSVERGKR 251



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 53/239 (22%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSY------------------ 41
           + + +WN+++AG+A Q G  K A  LF    ++  + D+V++                  
Sbjct: 24  RNSSSWNAMIAGYA-QNGHCKAALHLFRAMNNEGQRCDMVTFVAAIDACAGLSALVAGRS 82

Query: 42  ------------NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKN 85
                       ++ +S  ++N        D     F  +  K+  SW+TMI+ FVQ  +
Sbjct: 83  LHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFSSIRNKNLISWSTMITAFVQNGH 142

Query: 86  MAKARDLFLAMPEK----NSVSWSAMIS-----GYIECG--QLDKAVELFKVAPVKSVVA 134
             +A D FLAM       ++V++ +++S     G  E G    D  V  F + P  ++  
Sbjct: 143 TDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEHGFFHFDLLVHDFGITP--TMDH 200

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           +  M+    + G++  AE+L   MP   + VTWN ++A    +   E G +   +++ L
Sbjct: 201 FKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAACRVHKSVERGKRAAEVLLEL 259


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 348/615 (56%), Gaps = 56/615 (9%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM-LSCILLNSDDVVAAFDFFQRLP 66
           N N ++    KQ G L  A ++  + P P   +Y ++ LSC   NS  +    D  + L 
Sbjct: 49  NNNPLIQSLCKQ-GNLNQALQVLSQEPNPTQHTYELLILSCTRQNS--LPQGIDLHRHL- 104

Query: 67  IKDTASWNT-----MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           I D +  +      +I+ + +  ++  AR +F    ++    W+A+       G   + +
Sbjct: 105 IHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVL 164

Query: 122 ELFK--------------VAPVKSVVAWTAMIS--------------------------- 140
           +L++                 +K+ VA  A +S                           
Sbjct: 165 DLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTL 224

Query: 141 --GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRP 196
              Y +FG V  A ++FD+MP KN+V+W+AMIA Y +N    + L+L R M+     + P
Sbjct: 225 LDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLP 284

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N+ ++ SVL  C+ L++L+ GK +H  + +  L      ++ L+++Y +CG+LE   ++F
Sbjct: 285 NSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVF 344

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++++DVV+WN++IS Y  HG G KA+++F +M D+G+ P  I+FV++L AC+HAGLV+
Sbjct: 345 ERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVE 404

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G   F+SMV  + I    +HY CMVDLLGRA +L EA  +I  M  +P P ++G+LL +
Sbjct: 405 EGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGS 464

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CR+H  ++LAE A   LF L P N AG YV LA+IYA  K W++V R+++ ++   + K+
Sbjct: 465 CRIHCNVELAERATSRLFELEPTN-AGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKV 523

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG S IE+   ++ F S D  +P++  +H  L +L   MK  GYVPD +  L+ +  E K
Sbjct: 524 PGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEK 583

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           E+++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS    REI+VRD  R
Sbjct: 584 ERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNR 643

Query: 557 FHHFKDGTCSCGDYW 571
           FH F+DG CSCGDYW
Sbjct: 644 FHLFQDGVCSCGDYW 658



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 123/247 (49%), Gaps = 10/247 (4%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV-- 126
           D+ + N +I    ++ N+ +A  +    P     ++  +I        L + ++L +   
Sbjct: 46  DSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLI 105

Query: 127 --APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                +     T +I+ Y +   +D A K+FD+   + +  WNA+        +  + L 
Sbjct: 106 HDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLD 165

Query: 185 LLRMMIGLGIRPNASSLSSVLLGC----SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           L R M  +G+  +  + + VL  C    + +S L  G+++H  + +         +T L+
Sbjct: 166 LYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLL 225

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPD 298
            MY + G + +A ++F ++  K+VV+W+AMI+ Y+++GK  +AL LF KM  +++ + P+
Sbjct: 226 DMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPN 285

Query: 299 SITFVAL 305
           S+T V++
Sbjct: 286 SVTMVSV 292



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 87/180 (48%), Gaps = 32/180 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK--IPQPDVVSYNIMLSCI---------- 48
           M VK  V+W++++A ++K  GK  +A ELF K  +   D++  ++ +  +          
Sbjct: 244 MPVKNVVSWSAMIACYSKN-GKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAAL 302

Query: 49  ----LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
               L++   +    D    LP+      + +++ + +  N+     +F  M +++ VSW
Sbjct: 303 EQGKLMHGYILRRGLDSI--LPV-----VSALVTVYARCGNLELGHRVFERMEKRDVVSW 355

Query: 105 SAMISGYIECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +++IS Y   G   KA+++FK      ++P  S +++ +++      G V+  + LF+ M
Sbjct: 356 NSLISSYGIHGFGRKAIQIFKEMIDQGLSP--SPISFVSVLGACSHAGLVEEGKVLFESM 413


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/532 (38%), Positives = 309/532 (58%), Gaps = 41/532 (7%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---------VAPVK 130
           + +  ++  AR +F AMP +N V+WSA+I G++ C ++ +A  LFK         ++P  
Sbjct: 168 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 227

Query: 131 -------------------------------SVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                                           + A  +++S Y K G +D A  LFDEM 
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 287

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            K+ V+++A+++GYV+N  AE+   + + M    + P+A+++ S++  CSHL++LQ G+ 
Sbjct: 288 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 347

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
            H  V    L  +T+    LI MY KCG ++ + ++F  +  +D+V+WN MI+GY  HG 
Sbjct: 348 SHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGL 407

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
           G++A  LF +M + G  PD +TF+ LL AC+H+GLV  G  +F  M + YG+  + +HY 
Sbjct: 408 GKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI 467

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
           CMVDLL R G L EA + I+ MP +    ++  LL ACRV+K +DL +  +  +  L P 
Sbjct: 468 CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP- 526

Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
              G +V L+NIY+A  ++D+ A +R+  K     K PG SWIE+   +H F  GD+ HP
Sbjct: 527 EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHP 586

Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 519
           +   I+ +L  +   +K  GY PD  F L  + EE KE+ L+ HSEKLAIA+G++ +   
Sbjct: 587 QSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSED 646

Query: 520 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             I V KNLRVCGDCH   K+IS +++R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 647 KTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 168/328 (51%), Gaps = 22/328 (6%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSAMISGY 111
           A   F  +P +D  +WN M++G+        A    L+M  +      N+ +  A++   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 112 IECGQLDKAVELF--------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
            + G L +   +               K      V+  TA++  Y K G +  A ++FD 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQL 216
           MP +N VTW+A+I G+V  S       L + M+  G+   + +S++S L  C+ L  L++
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G+Q+H L+ KS +  D TA   L+SMY K G ++ A  LF E+  KD V+++A++SGY Q
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           +G+ E+A  +F KM+   ++PD+ T V+L+ AC+H   +  G     S++   G+A++  
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETS 362

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               ++D+  + G++  +  +   MP +
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSR 390



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 118/257 (45%), Gaps = 20/257 (7%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGY 111
           D  +A FD    + +KDT S++ ++SG+VQ     +A  +F  M   N     + M+S  
Sbjct: 277 DQAIALFD---EMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333

Query: 112 IECGQL---------DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             C  L           +V +  +A   S+    A+I  Y K G++DL+ ++F+ MP+++
Sbjct: 334 PACSHLAALQHGRCSHGSVIIRGLASETSIC--NALIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VH 221
           +V+WN MIAGY  +   ++   L   M  LG  P+  +   +L  CSH   +  GK   H
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 451

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISG---YAQH 277
            +     L         ++ +  + G L++A +    +  R DV  W A++     Y   
Sbjct: 452 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 511

Query: 278 GKGEKALRLFDKMKDEG 294
             G+K  R+  ++  EG
Sbjct: 512 DLGKKVSRMIQELGPEG 528



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 47/274 (17%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A++  Y++C  L  A  +F   P + +VAW AM++GY   G                  
Sbjct: 49  TALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG------------------ 90

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
            ++  +A             LL M + +  +RPNAS+L ++L   +   +L  G  VH  
Sbjct: 91  MYHHAVA------------HLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAY 138

Query: 224 VF----------KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
                       KS L       T L+ MY KCG L  A ++F  +  ++ VTW+A+I G
Sbjct: 139 CIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGG 198

Query: 274 YAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           +    +  +A  LF  M  +G   + P SI   + L AC     + +G Q   +++   G
Sbjct: 199 FVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSG 255

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           + A       ++ +  +AG + +A+ L  +M  K
Sbjct: 256 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 289



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 33/264 (12%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + PN  +    L  CS L+    G+ +H+    + L  D    T L+ MY KC  L DA 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALR--LFDKMKDEGMKPDSITFVALLLACNH 311
            +F  +  +D+V WNAM++GYA HG    A+   L  +M+   ++P++ T VALL     
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 312 AGLVDLGIQYFDSMVNDYGIAA--KPDHY------------TCMVDLLGRAGKLVEAVDL 357
            G +  G     + V+ Y I A   P+              T ++D+  + G L+ A  +
Sbjct: 126 QGALAQG-----TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 358 IKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
              MP + +    A+ G  +   R+ +   L  F AM    L       C++   +I +A
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLL--FKAMLAQGL-------CFLSPTSIASA 231

Query: 415 MKKWDDVARIRLSMKENNVVKMPG 438
           ++    +  +R+  + + ++   G
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSG 255


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 308/518 (59%), Gaps = 10/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQL 117
           F ++P +D  SW  +I+G+ Q    A+A     D+  A    N  ++++++     CG  
Sbjct: 15  FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 74

Query: 118 DKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               ++  +A      + V   +A++  Y +  ++D+A  +FD + +KN V+WNA+IAG+
Sbjct: 75  SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 134

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
              +  E  L     M   G      + SS+    + + +L+ G+ VH  + KS      
Sbjct: 135 ARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 194

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                ++ MY K G + DA K+F  + ++D+VTWN M++  AQ+G G++A+  F++++  
Sbjct: 195 FVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKC 254

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++ + ITF+++L AC+H GLV  G  YFD M+ DY +  + DHY   VDLLGRAG L E
Sbjct: 255 GIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKE 313

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  + KMP +P  A++G LL ACR+HK   + ++AA ++F L+P +  G  V L NIYA
Sbjct: 314 ALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDT-GPPVLLYNIYA 372

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +  KW+D AR+R  MK   V K P  SW+++   VH F + D  HP+   I+   +E+  
Sbjct: 373 STGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINM 432

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           R+K AGYVP+    L  + E+ +E  L +HSEK+A+AF LI +P G  IR+ KN+R+CGD
Sbjct: 433 RIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGD 492

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A KY+S + KREI+VRDT RFHHF +G+CSCGDYW
Sbjct: 493 CHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 118/235 (50%), Gaps = 2/235 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y K G V  A  +FD+MP++++V+W  +IAGY +N    + + LL  M+    RPN  + 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +S+L          +G+Q+H L  K    +D    + L+ MY +C  ++ A  +F  +  
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           K+ V+WNA+I+G+A+   GE  L  F +M+  G      T+ ++  A    G ++ G ++
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-RW 180

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
             + +   G          M+ +  ++G +V+A  +  +M  K     + T+L+A
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 234



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MYCKCG + DA  +F ++  +DVV+W  +I+GYAQ+    +A+ L   M     +P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 302 FVALLLACNHAGLVDLGIQ 320
           F +LL A    G   +G Q
Sbjct: 61  FTSLLKATGACGGCSIGEQ 79


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/482 (39%), Positives = 300/482 (62%), Gaps = 3/482 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L  +    G+++DA  LFD +P  D  S+NI+L+  L+ S ++  A  
Sbjct: 124 MPERNVVSWNTMLEAYTSA-GRVRDAWTLFDGMPVRDAGSWNILLAA-LVRSGNMDKARK 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  +W TM++G  +  ++ +AR LF  MPE+N VSW+AMISGY    ++D+A
Sbjct: 182 LFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEA 241

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF   P + + +W  MI+G+++   ++ A+ LFD+MP +N++TW  M+ GY+++  +E
Sbjct: 242 HDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSE 301

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L++   M+  GIRPN  +    +  CS+L+ L  G+QVHQ++ K+    DT   + L+
Sbjct: 302 TALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLM 361

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG++  A K+F   + KDV++WN MI+ YA HG G +A+ L++KM+++G KP+ +
Sbjct: 362 NLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDV 421

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+V LL AC+H+GLVD G++ F+ MV D  IA + +HYTC++DL  RAG+L +A  LI  
Sbjct: 422 TYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHF 481

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           +  +P   ++  LL  C  H    + + AA NL    P N AG Y  L NIYA+  KW +
Sbjct: 482 LKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEP-NNAGTYTLLCNIYASAGKWKE 540

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
            A+IR  M +  + K PG SWIEV   VH F S D+ H E   I+  L+++   M++A  
Sbjct: 541 AAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLLQDIHDIMRMACT 600

Query: 481 VP 482
           VP
Sbjct: 601 VP 602



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 179/401 (44%), Gaps = 101/401 (25%)

Query: 77  ISGFVQKKN-----------MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF- 124
           +SG VQ  N           ++ AR LF   P+++ VSW+A+++ Y   G L  A  LF 
Sbjct: 31  VSGHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD 90

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI-----AGYVENSWA 179
           +    ++VV WTA++SGY + G+VD AE LF  MP +N+V+WN M+     AG V ++W 
Sbjct: 91  RPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWT 150

Query: 180 E-DGLK---------LLRMMIGLGIRPNASSL------------SSVLLGCSHLSSLQLG 217
             DG+          LL  ++  G    A  L            ++++ G +   S+   
Sbjct: 151 LFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEA 210

Query: 218 K----------------------------QVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
           +                            + H L  K P  +D  +   +I+ + +  DL
Sbjct: 211 RALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMP-TRDIASWNIMITGFIQDRDL 269

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E A  LF ++ R++V+TW  M++GY Q  + E AL++F+ M  EG++P+ +TF+  + AC
Sbjct: 270 ERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDAC 329

Query: 310 NHAGLVDLGIQ----------YFDSMVND------------------YGIAAKPD--HYT 339
           ++   +  G Q           FD+ +                    + ++ + D   + 
Sbjct: 330 SNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWN 389

Query: 340 CMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
            M+      G  VEA+ L +KM    +KP    +  LLSAC
Sbjct: 390 GMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSAC 430



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           ++     G + DA +LF     +DVV+W A+++ YA+ G    A  LFD+      + + 
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDR---PDARRNV 98

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
           +T+ ALL     AG VD     F  M     ++     +  M++    AG++ +A  L  
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFQRMPERNVVS-----WNTMLEAYTSAGRVRDAWTLFD 153

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP +   + +  LL+A      +D A      LF+  P      +  +    A     D
Sbjct: 154 GMPVRDAGS-WNILLAALVRSGNMDKAR----KLFDRMPERNVMAWTTMVAGIARSGSVD 208

Query: 420 DVARIRLSMKENNVVK----MPGYS 440
           +   +   M E NVV     + GY+
Sbjct: 209 EARALFDGMPERNVVSWNAMISGYA 233


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 322/579 (55%), Gaps = 58/579 (10%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ--KKNMAKARDLFLAMP-----EKNSV 102
           L+  D+  A   F ++P ++  SWNT+I GF +  +     A  LF  M      E N  
Sbjct: 63  LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRF 122

Query: 103 SW-----------------------------------SAMISGYIECGQLDKAVELFKVA 127
           ++                                   S ++  Y+ CG +  A  LF   
Sbjct: 123 TFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKN 182

Query: 128 PVK--------------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            ++               VV W  MI GYM+ G    A  LFD+M  +++V+WN MI+GY
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 242

Query: 174 VENSWAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            +N + +D +++ R M  G  IRPN  +L SVL   S L SL+LG+ +H     S +  D
Sbjct: 243 SQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRID 302

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               + LI MY KCG +E A  +F  + R++V+TW+AMI+G+A HG+   A+  F KM+ 
Sbjct: 303 DVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQ 362

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G++P  + ++ LL AC+HAGLV+ G +YF  MV+  G+  + +HY CMVDLLGR G L 
Sbjct: 363 AGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLD 422

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA + I  MP KP   I+  LL ACR+H+ +++ +  A  L ++ P ++ G YV L+N+Y
Sbjct: 423 EAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDS-GAYVALSNMY 481

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A+   W +V+ +RL MKE ++ K PG SWI++  V+HEF   D  HP    I+  L E+ 
Sbjct: 482 ASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEIS 541

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            +++LAGY P     L  + EE KE  L +HSEK+A AFGLI    G PIR+ KNLR+C 
Sbjct: 542 DKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICE 601

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH + K IS + KR+I VRD  RFHHF+DG+CSC DYW
Sbjct: 602 DCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 15/281 (5%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           +VV +N+M+    +   D  AA   F ++  +   SWNTMISG+ Q      A ++F  M
Sbjct: 200 EVVLWNVMIDG-YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREM 258

Query: 97  PE-----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGK 147
            +      N V+  +++      G L+    L   A    +    V  +A+I  Y K G 
Sbjct: 259 KKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 318

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           ++ A  +F+ +P +N++TW+AMI G+  +  A D +     M   G+RP+  +  ++L  
Sbjct: 319 IEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 378

Query: 208 CSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVV 265
           CSH   ++ G++   Q+V    L         ++ +  + G L++A +  L +  K D V
Sbjct: 379 CSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDV 438

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 305
            W A++     H   E   R+ + + D  M P DS  +VAL
Sbjct: 439 IWKALLGACRMHRNVEMGKRVANILMD--MVPHDSGAYVAL 477


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 308/518 (59%), Gaps = 10/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQL 117
           F ++P +D  SW  +I+G+ Q    A+A     D+  A    N  ++++++     CG  
Sbjct: 118 FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 177

Query: 118 DKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               ++  +A      + V   +A++  Y +  ++D+A  +FD + +KN V+WNA+IAG+
Sbjct: 178 SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 237

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
              +  E  L     M   G      + SS+    + + +L+ G+ VH  + KS      
Sbjct: 238 ARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTA 297

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                ++ MY K G + DA K+F  + ++D+VTWN M++  AQ+G G++A+  F++++  
Sbjct: 298 FVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKC 357

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G++ + ITF+++L AC+H GLV  G  YFD M+ DY +  + DHY   VDLLGRAG L E
Sbjct: 358 GIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKE 416

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  + KMP +P  A++G LL ACR+HK   + ++AA ++F L+P +  G  V L NIYA
Sbjct: 417 ALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDT-GPPVLLYNIYA 475

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           +  KW+D AR+R  MK   V K P  SW+++   VH F + D  HP+   I+   +E+  
Sbjct: 476 STGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINM 535

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           R+K AGYVP+    L  + E+ +E  L +HSEK+A+AF LI +P G  IR+ KN+R+CGD
Sbjct: 536 RIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGD 595

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A KY+S + KREI+VRDT RFHHF +G+CSCGDYW
Sbjct: 596 CHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 121/241 (50%), Gaps = 2/241 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            ++I  Y K G V  A  +FD+MP++++V+W  +IAGY +N    + + LL  M+    R
Sbjct: 99  NSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFR 158

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           PN  + +S+L          +G+Q+H L  K    +D    + L+ MY +C  ++ A  +
Sbjct: 159 PNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMV 218

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +  K+ V+WNA+I+G+A+   GE  L  F +M+  G      T+ ++  A    G +
Sbjct: 219 FDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 278

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G ++  + +   G          M+ +  ++G +V+A  +  +M  K     + T+L+
Sbjct: 279 EQG-RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLT 336

Query: 376 A 376
           A
Sbjct: 337 A 337



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%)

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
           +  GL+ L ++    + P      S++  C+   +L   + +H  + +S L  D   L  
Sbjct: 41  SSTGLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNS 100

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI MYCKCG + DA  +F ++  +DVV+W  +I+GYAQ+    +A+ L   M     +P+
Sbjct: 101 LIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPN 160

Query: 299 SITFVALLLACNHAGLVDLGIQ 320
             TF +LL A    G   +G Q
Sbjct: 161 GFTFTSLLKATGACGGCSIGEQ 182


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/538 (37%), Positives = 311/538 (57%), Gaps = 41/538 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
             ++  + +  ++  AR +F AMP +N V+WSA+I G++ C ++ +A  LFK        
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 126 -VAPVK-------------------------------SVVAWTAMISGYMKFGKVDLAEK 153
            ++P                                  + A  +++S Y K G +D A  
Sbjct: 337 FLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LFDEM  K+ V+++A+++GYV+N  AE+   + + M    + P+A+++ S++  CSHL++
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           LQ G+  H  V    L  +T+    LI MY KCG ++ + ++F  +  +D+V+WN MI+G
Sbjct: 457 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 516

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y  HG G++A  LF +M + G  PD +TF+ LL AC+H+GLV  G  +F  M + YG+  
Sbjct: 517 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTP 576

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
           + +HY CMVDLL R G L EA + I+ MP +    ++  LL ACRV+K +DL +  +  +
Sbjct: 577 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 636

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
             L P    G +V L+NIY+A  ++D+ A +R+  K     K PG SWIE+   +H F  
Sbjct: 637 QELGP-EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 454 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 513
           GD+ HP+   I+ +L  +   +K  GY PD  F L  + EE KE+ L+ HSEKLAIA+G+
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 755

Query: 514 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + +     I V KNLRVCGDCH   K+IS +++R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 756 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 195/436 (44%), Gaps = 93/436 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-AFDFFQRLPIKDTASWN----- 74
           G L  A  LFD+IP PDV +YN ++     +S    A     ++R+     A  N     
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 75  ----------------------------------TMISGFVQKKNMAKARDLFLAMPEKN 100
                                              ++  +V+   +  A  +F  MP ++
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 101 SVSWSAMISGYIECGQLDKAV--------ELFKVAPVKS--------------------- 131
            V+W+AM++GY   G    AV        ++ ++ P  S                     
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 132 ----------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                                 V+  TA++  Y K G +  A ++FD MP +N VTW+A+
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I G+V  S       L + M+  G+   + +S++S L  C+ L  L++G+Q+H L+ KS 
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 370

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           +  D TA   L+SMY K G ++ A  LF E+  KD V+++A++SGY Q+G+ E+A  +F 
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           KM+   ++PD+ T V+L+ AC+H   +  G     S++   G+A++      ++D+  + 
Sbjct: 431 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKC 489

Query: 349 GKLVEAVDLIKKMPFK 364
           G++  +  +   MP +
Sbjct: 490 GRIDLSRQVFNMMPSR 505



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 147/318 (46%), Gaps = 35/318 (11%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS--WAEDGLKLLRMMIGLGIRPNAS 199
           ++  G +  A  LFD++P+ ++ T+N +I  Y  +S   A DGL L R M+   + PN  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +    L  CS L+    G+ +H+    + L  D    T L+ MY KC  L DA  +F  +
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALR--LFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
             +D+V WNAM++GYA HG    A+   L  +M+   ++P++ T VALL      G +  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 318 GIQYFDSMVNDYGIAA--KPDHY------------TCMVDLLGRAGKLVEAVDLIKKMPF 363
           G     + V+ Y I A   P+              T ++D+  + G L+ A  +   MP 
Sbjct: 247 G-----TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 301

Query: 364 KPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           + +    A+ G  +   R+ +   L  F AM    L       C++   +I +A++    
Sbjct: 302 RNEVTWSALIGGFVLCSRMTQAFLL--FKAMLAQGL-------CFLSPTSIASALRACAS 352

Query: 421 VARIRLSMKENNVVKMPG 438
           +  +R+  + + ++   G
Sbjct: 353 LDHLRMGEQLHALLAKSG 370


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 270/440 (61%), Gaps = 30/440 (6%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKN----LVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            +++  Y+K G++    +LFDE P +N    ++ WN                        
Sbjct: 177 VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN------------------------ 212

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G+RPN  ++ S LL C+ + +LQ+G+++H  +  +    +    T L+ MY KCG+++ 
Sbjct: 213 -GVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKS 271

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F+E + KD++TW+ MI G+A HG  ++AL+ F KMK  G+ PD + F+A+L AC+H
Sbjct: 272 ASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSH 331

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +G VD G+ +F+SM  DY I     HYT +VDLLGRAG+L EA+  I+ MP  P   I+G
Sbjct: 332 SGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWG 391

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            L  ACR HK +++AE  A  L  L P +  G YV L+N+YAA+ +W+DV R+R  MK  
Sbjct: 392 ALFCACRAHKNIEMAELTAEKLLQLEPKHP-GSYVFLSNVYAAVGRWEDVERVRTLMKNR 450

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            V K PG+S+IEV   VH F +GD  H     I  KL+E+    K  GY+P+  + LH +
Sbjct: 451 GVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNI 510

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE KE  L  HSEKLA+AFGLI    G+ IR+ KNLRVCGDCH   KY S + +REII+
Sbjct: 511 EEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIIL 570

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFKDGTCSCGDYW
Sbjct: 571 RDIKRFHHFKDGTCSCGDYW 590



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 30/223 (13%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +IS       +D A  +F      NL  +NA+I G  ENS  E  +    +M+ L IR
Sbjct: 76  TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +L  VL   + L  + LG+ +H  V K  L  D+     L+ MY K G+L    +L
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195

Query: 256 FLEIQRKD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           F E  +++    ++ WN                         G++P+ +T V+ LLAC  
Sbjct: 196 FDESPQRNKAESILLWN-------------------------GVRPNDLTVVSALLACTK 230

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            G + +G +   + ++  G        T +VD+  + G +  A
Sbjct: 231 IGALQVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSA 272



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 44/251 (17%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           Q+H  +F   L  ++  +T LIS  C    L+ A  +F      ++  +NA+I G A++ 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 279 KGEKALRLFDKMKDEGMKPDSITF------VALLL-----ACNHAGLVDLGIQYFDSMVN 327
           + E ++  F  M    ++PD +T       VA L+      C H G++ LG++ FDS V 
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVR 176

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-------------FKPQPAIFGTLL 374
                        +VD+  + G+L   + L  + P              +P      + L
Sbjct: 177 -----------VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSAL 225

Query: 375 SACRVHKRLDLAE----FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
            AC     L + E    + + N F LN     G    L ++YA        +R+ +  K 
Sbjct: 226 LACTKIGALQVGERIHNYLSSNGFQLN----RGIGTALVDMYAKCGNIKSASRVFVETKG 281

Query: 431 NNVVKMPGYSW 441
            +++      W
Sbjct: 282 KDLLTWSVMIW 292


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 323/571 (56%), Gaps = 34/571 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSC----------------ILLNS--DDVVAAFDFFQR 64
           +++AQ +FD +P  +VV++N + SC                ++LN    D+V        
Sbjct: 394 VREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHA 453

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
                      +I GF  +  M +  D+F+          +A++S Y +C  + +A  +F
Sbjct: 454 CSDLQDLKSGKVIHGFAVRHGMVE--DVFVC---------NALLSLYAKCVCVREAQVVF 502

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAE 180
            + P + V +W  +++ Y    + +    +F +M    +    +TW+ +I G V+NS  E
Sbjct: 503 DLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIE 562

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           + +++ R M  +G +P+ +++ S+L  CS    L++GK++H  VF+     D      L+
Sbjct: 563 EAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALV 622

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG L  +  +F  +  KDV +WN MI     HG G++AL LF+KM    +KPDS 
Sbjct: 623 DMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSA 682

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF  +L AC+H+ LV+ G+Q F+SM  D+ +  + +HYTC+VD+  RAG L EA   I++
Sbjct: 683 TFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQR 742

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P    +   L+ CRV+K ++LA+ +A  LF ++P N +  YV L NI    K W +
Sbjct: 743 MPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDP-NGSANYVTLFNILVTAKLWSE 801

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
            ++IR  MKE  + K PG SW  VG  VH F +GD+ + E   I+  L EL  ++K AGY
Sbjct: 802 ASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGY 861

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
            PD ++ LH + +E K + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A KY
Sbjct: 862 KPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKY 921

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +S +    I+VRD+ RFHHFK+G CSC D+W
Sbjct: 922 MSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 187/430 (43%), Gaps = 84/430 (19%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-------------------L 50
           +S    F  +   +++AQ +FD +P  DVV++N + SC +                   +
Sbjct: 179 SSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGV 238

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK--------------------AR 90
             D V  +        ++D  S    I GF  K  M +                    A+
Sbjct: 239 KPDPVTVSCILSACSDLQDLKS-GKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQ 297

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP---------------- 128
            +F  MP +N ++W+++ S Y+ CG   K + +F+      V P                
Sbjct: 298 AVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLK 357

Query: 129 -----------------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
                            V+ V   TA+++ Y     V  A+ +FD MP +N+VTWN++ +
Sbjct: 358 DLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSS 417

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
            YV   + + GL + R M+  G++P+  ++ S+L  CS L  L+ GK +H    +  + +
Sbjct: 418 CYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE 477

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+S+Y KC  + +A  +F  I  ++V +WN +++ Y  + + EK L +F +M 
Sbjct: 478 DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMN 537

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            + +K D IT+  ++  C     ++  ++ F  M     +  KPD  T    L  RA  L
Sbjct: 538 RDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQT---MGFKPDETTIYSIL--RACSL 592

Query: 352 VEAVDLIKKM 361
            E + + K++
Sbjct: 593 SECLRMGKEI 602



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 163/339 (48%), Gaps = 21/339 (6%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISG 110
           V  A   F  L  +D  +WN++ + +V     ++ +   R + L   + N ++ S+++ G
Sbjct: 91  VEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPG 150

Query: 111 YIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             +   L    E+     +   V+ V   +A ++ Y K   V  A+ +FD MP +++VTW
Sbjct: 151 CSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTW 210

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N++ + YV   + + GL + R M+  G++P+  ++S +L  CS L  L+ GK +H    K
Sbjct: 211 NSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALK 270

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
             + ++      L+++Y  C  + +A  +F  +  ++V+TWN++ S Y   G  +K L +
Sbjct: 271 HGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNV 330

Query: 287 FDKMKDEGMKPDSITFVALLLACNH-----AGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           F +M   G+KPD +   ++L AC+      +G    G      MV D  +       T +
Sbjct: 331 FREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVC------TAL 384

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
           V+L      + EA  +   MP +    +    LS+C V+
Sbjct: 385 VNLYANCLCVREAQTVFDLMPHR--NVVTWNSLSSCYVN 421



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 101/175 (57%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A I  Y K   V+ A ++FD++  +++VTWN++ A YV   + + GL + R M    ++
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            N  ++SS+L GCS L  L+ GK++H  V +  + +D    +  ++ Y KC  + +A  +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           F  +  +DVVTWN++ S Y   G  +K L +F +M  +G+KPD +T   +L AC+
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%)

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + +K+       GI+P+     +V   C+        KQ H    +  +  D +     
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I  Y KC  +E A ++F ++  +DVVTWN++ + Y   G  ++ L +F KM    +K + 
Sbjct: 82  IHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANP 141

Query: 300 ITFVALLLACN 310
           +T  ++L  C+
Sbjct: 142 LTVSSILPGCS 152



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 109/232 (46%), Gaps = 34/232 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK  G L  ++ +FD +P  DV S+N M+    ++ +    A   F+++ +  
Sbjct: 619 NALVDMYAKC-GGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNG-KEALSLFEKMLLSM 676

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKA 120
              D+A++  ++S       + +   +F +M      E  +  ++ ++  Y   G L++A
Sbjct: 677 VKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEA 736

Query: 121 VELFKVAPVK-SVVAWTAMISGYMKFGKVDL----AEKLFDEMP--TKNLVT-WNAMIAG 172
               +  P++ + +AW A ++G   +  V+L    A+KLF+  P  + N VT +N ++  
Sbjct: 737 YGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTA 796

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            +   W+E   K+ ++M   GI            GCS      +G +VH  V
Sbjct: 797 KL---WSEAS-KIRKLMKERGITKTP--------GCSW---FHVGNRVHTFV 833


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/538 (37%), Positives = 311/538 (57%), Gaps = 41/538 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
             ++  + +  ++  AR +F AMP +N V+WSA+I G++ C ++ +A  LFK        
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 126 -VAPVK-------------------------------SVVAWTAMISGYMKFGKVDLAEK 153
            ++P                                  + A  +++S Y K G +D A  
Sbjct: 337 FLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LFDEM  K+ V+++A+++GYV+N  AE+   + + M    + P+A+++ S++  CSHL++
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           LQ G+  H  V    L  +T+    LI MY KCG ++ + ++F  +  +D+V+WN MI+G
Sbjct: 457 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 516

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y  HG G++A  LF +M + G  PD +TF+ LL AC+H+GLV  G  +F  M + YG+  
Sbjct: 517 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTP 576

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
           + +HY CMVDLL R G L EA + I+ MP +    ++  LL ACRV+K +DL +  +  +
Sbjct: 577 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 636

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
             L P    G +V L+NIY+A  ++D+ A +R+  K     K PG SWIE+   +H F  
Sbjct: 637 QELGP-EGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 454 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 513
           GD+ HP+   I+ +L  +   +K  GY PD  F L  + EE KE+ L+ HSEKLAIA+G+
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGI 755

Query: 514 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + +     I V KNLRVCGDCH   K+IS +++R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 756 LSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 195/436 (44%), Gaps = 93/436 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-AFDFFQRLPIKDTASWN----- 74
           G L  A  LFD+IP PDV +YN ++     +S    A     ++R+     A  N     
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 75  ----------------------------------TMISGFVQKKNMAKARDLFLAMPEKN 100
                                              ++  +V+   +  A  +F  MP ++
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 101 SVSWSAMISGYIECGQLDKAV--------ELFKVAPVKS--------------------- 131
            V+W+AM++GY   G    AV        ++ ++ P  S                     
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 132 ----------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                                 V+  TA++  Y K G +  A ++FD MP +N VTW+A+
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           I G+V  S       L + M+  G+   + +S++S L  C+ L  L++G+Q+H L+ KS 
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 370

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           +  D TA   L+SMY K G ++ A  LF E+  KD V+++A++SGY Q+G+ E+A  +F 
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           KM+   ++PD+ T V+L+ AC+H   +  G     S++   G+A++      ++D+  + 
Sbjct: 431 KMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKC 489

Query: 349 GKLVEAVDLIKKMPFK 364
           G++  +  +   MP +
Sbjct: 490 GRIDLSRQVFNMMPSR 505



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 145/318 (45%), Gaps = 35/318 (11%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS--WAEDGLKLLRMMIGLGIRPNAS 199
           ++  G +  A  LFD++P+ ++ T+N +I  Y  +S   A DGL L R M+   + PN  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +    L  CS L+    G+ +H+    + L  D    T L+ MY KC  L DA  +F  +
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALR--LFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
             +D+V WNAM++GYA HG    A+   L  +M+   ++P++ T VALL      G +  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 318 GIQYFDSMVNDYGIAAKPDHY--------------TCMVDLLGRAGKLVEAVDLIKKMPF 363
           G     + V+ Y I A                   T ++D+  + G L+ A  +   MP 
Sbjct: 247 G-----TSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 301

Query: 364 KPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           + +    A+ G  +   R+ +   L  F AM    L       C++   +I +A++    
Sbjct: 302 RNEVTWSALIGGFVLCSRMTQAFLL--FKAMLAQGL-------CFLSPTSIASALRACAS 352

Query: 421 VARIRLSMKENNVVKMPG 438
           +  +R+  + + ++   G
Sbjct: 353 LDHLRMGEQLHALLAKSG 370


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/458 (43%), Positives = 280/458 (61%), Gaps = 3/458 (0%)

Query: 116 QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           +L KA+   + ++    +V   TA+++ Y     V  A ++FDE+P +N+V+WNA+I GY
Sbjct: 159 ELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGY 218

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N      + + R M   G +P   ++  VLL C+HL +L  G+ +   +  + L  + 
Sbjct: 219 NHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNV 278

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T LI MY KCG +++A K+F  ++ K+V TWN +ISGYA +G+GE AL+ F +M  E
Sbjct: 279 FVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIME 338

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
             KPD +TF+ +L AC H GLV+ G  YF SM  ++G+  + +HY CMVDLLGRAG L E
Sbjct: 339 KFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDE 398

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A  LI+ M  +P P I+  LL ACR+H  + L EFA   L  L P N    YV LAN+YA
Sbjct: 399 AQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGEN-YVLLANLYA 457

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
             ++WD V  +R  M    V K+PG S IE+  VV+EF   + + P    +++ L ++ K
Sbjct: 458 RDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNK 517

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           ++KLAGYV D   A + + EE KE  L++HSEKLA+AFGL+K P G  +R+ KNLR+C D
Sbjct: 518 KLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQD 577

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K +S + +R+I VRD  RFHHF  G CSC DYW
Sbjct: 578 CHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 104/198 (52%), Gaps = 1/198 (0%)

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+MI  Y +++     + +   M   GI P++S+  +VL   + L   +LGK +H  + +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                +    T L++MY  C  + DA ++F EI  +++V+WNA+I+GY  +    K + +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F +M+  G KP  +T V +LLAC H G ++ G ++ D  ++   +       T ++D+  
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQG-RWIDDYIDHNRLRLNVFVGTALIDMYA 289

Query: 347 RAGKLVEAVDLIKKMPFK 364
           + G + EA  + K M  K
Sbjct: 290 KCGVVDEAEKIFKAMRVK 307



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 118/325 (36%), Gaps = 71/325 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-----DDV 55
           M  ++ V  ++ L         + DA+++FD+IP  ++VS+N +++    N       DV
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--NSVSWSAMISGYIE 113
                     P++ T     +    +   N  +  D ++       N    +A+I  Y +
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           CG +D+A ++FK   VK+V  W  +ISGY   G+                          
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGR-------------------------- 324

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
                 E  L+    MI    +P+  +   VL  C H   +  G+      F S   K+ 
Sbjct: 325 -----GESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRT----YFTS--MKEE 373

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
             L P I  Y                          M+    + G  ++A +L   M   
Sbjct: 374 FGLRPRIEHY------------------------GCMVDLLGRAGFLDEAQQLIQAM--- 406

Query: 294 GMKPDSITFVALLLACNHAGLVDLG 318
            M+PD I +  LL AC   G + LG
Sbjct: 407 SMQPDPIIWRELLGACRIHGNIQLG 431


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/518 (39%), Positives = 296/518 (57%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ---L 117
           F+ +P  D   W+ +IS + Q     +A ++FL M   + V     +SG ++ C     L
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           D   ++     K+     +    A++  Y K   ++ + ++F  +   N V+WN +I GY
Sbjct: 369 DLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGY 428

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++ +AED L + + M    +     + SSVL  C++ +S++   Q+H L+ KS    DT
Sbjct: 429 CQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDT 488

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI  Y KCG + DA K+F  I + DVV+WNA+ISGYA HG+   AL LF++M   
Sbjct: 489 IVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKS 548

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
             KP+ +TFVALL  C   GLV+ G+  F+SM  D+ I    DHYTC+V LLGRAG+L +
Sbjct: 549 DTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLND 608

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  I  +P  P P ++  LLS+C VHK + L +F+A  +  + P +    YV L+N+YA
Sbjct: 609 ALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETT-YVLLSNMYA 667

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A    D VA +R SM+   V K  G SW+E+   VH F  G   HP++  I+  L+ L  
Sbjct: 668 AAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNL 727

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +    GYVPD+   LH V EE K ++L  HSE+LA+A+GL   P G PIR+ KNLR C D
Sbjct: 728 KASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLD 787

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K IS I +REI+VRD  RFHHF +G CSCGDYW
Sbjct: 788 CHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 135/297 (45%), Gaps = 39/297 (13%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
           DT   N +++ + +   +A AR LF  MPE+N VS+  ++ GY   G  ++A  LF+   
Sbjct: 83  DTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQ 142

Query: 126 -----------VAPVKSVVAWTA-------------------------MISGYMKFGKVD 149
                         +K +VA  A                         +I  Y   G V 
Sbjct: 143 REGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVS 202

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A  +FD +  K+ VTW AM++ Y EN   ED L     M   G +PN   L+SVL    
Sbjct: 203 HARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAV 262

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            LSS  LGK +H    K+    +      L+ MY KCG +EDA  +F  I   DV+ W+ 
Sbjct: 263 CLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSF 322

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           +IS YAQ  + E+A  +F +M    + P+  +   +L AC +   +DLG Q  + ++
Sbjct: 323 LISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 162/376 (43%), Gaps = 72/376 (19%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           +++I  +     ++ AR +F  +  K++V+W+AM+S Y E    + A+  F         
Sbjct: 189 SSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK 248

Query: 126 ------VAPVKSVVAWTAMISG-------------------------YMKFGKVDLAEKL 154
                  + +K+ V  ++ + G                         Y K G ++ A  +
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTV 308

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F+ +P  +++ W+ +I+ Y ++   E   ++   M+   + PN  SLS VL  C++++ L
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
            LG+Q+H LV K     +      L+ +Y KC ++E++ ++F  ++  + V+WN +I GY
Sbjct: 369 DLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGY 428

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD----SMVNDYG 330
            Q G  E AL +F +M+   +    +TF ++L AC +   +   +Q       S  N+  
Sbjct: 429 CQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDT 488

Query: 331 IAAKP--DHYT---CMVDLL------------------------GRAGKLVEAVDLIKKM 361
           I      D Y    C+ D L                        GRA   +E  + + K 
Sbjct: 489 IVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKS 548

Query: 362 PFKPQPAIFGTLLSAC 377
             KP    F  LLS C
Sbjct: 549 DTKPNDVTFVALLSVC 564



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 144/377 (38%), Gaps = 84/377 (22%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G ++DA+ +F+ IP  DV+ ++ ++S     S     AF+ F R+           +SG 
Sbjct: 300 GYIEDARTVFEIIPHDDVILWSFLIS-RYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGV 358

Query: 81  VQK---------------------------------------KNMAKARDLFLAMPEKNS 101
           +Q                                        +NM  + ++F ++ + N 
Sbjct: 359 LQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANE 418

Query: 102 VSWSAMISGYIECGQLDKAVELFK-----------------------VAPVKSVV----- 133
           VSW+ +I GY + G  + A+ +F+                        A +K  V     
Sbjct: 419 VSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSL 478

Query: 134 -----------AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                         ++I  Y K G +  A K+F+ +   ++V+WNA+I+GY  +  A D 
Sbjct: 479 IEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDA 538

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLIS 241
           L+L   M     +PN  +  ++L  C     +  G  + + +     +       T ++ 
Sbjct: 539 LELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVR 598

Query: 242 MYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DS 299
           +  + G L DA K   +I      + W A++S    H     AL  F   K   ++P D 
Sbjct: 599 LLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKN--VALGKFSAEKVLEIEPQDE 656

Query: 300 ITFVALLLACNHAGLVD 316
            T+V L      AG++D
Sbjct: 657 TTYVLLSNMYAAAGILD 673


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 317/539 (58%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L +   +  A   F+++    +  +NTM+ G V+  N  +A   +  M E+  
Sbjct: 25  NLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGV 84

Query: 100 --NSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             ++ ++  ++        +++ ++    + K+     V    ++IS Y K G++ +   
Sbjct: 85  KPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA 144

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS 212
           +F++M  +++ +W+A+I  +       D L+LL  M   G  R   S L SVL  C+HL 
Sbjct: 145 VFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLG 204

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L LG+ VH  + ++    +    T LI MY KCG L     LF ++ +K+ ++++ MIS
Sbjct: 205 ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMIS 264

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG G + LR+F +M ++G++PD I +V +L AC+HAGLV  G+Q F+ M  ++GI 
Sbjct: 265 GLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIE 324

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY CMVDL+GRAGK+ EA++LIK MP +P   ++ +LLSA +VH  L   E AA  
Sbjct: 325 PTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQ 384

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           LF L+   A+  YV L+N+YA  ++W+DVAR R +M    + + PG+S +EV   +H F 
Sbjct: 385 LFKLDSQKASD-YVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 443

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D  HP+  S++E L ++E ++K  GY PD    L  V EE K+Q L  HS+KLAIA+ 
Sbjct: 444 SQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYA 503

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI    G+P+R+ +NLR+C DCH  TK IS I  REI VRD  RFHHFKDG CSC DYW
Sbjct: 504 LIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562


>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
 gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/500 (40%), Positives = 292/500 (58%), Gaps = 11/500 (2%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAW 135
           +V+   +  ++ +F  M  KN V+W+++ISGY   G  D A  L      + +    + W
Sbjct: 2   YVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLITW 61

Query: 136 TAMISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            ++++GY   G    A  L  ++     T N+V+W A+I+G  +N    + ++    M  
Sbjct: 62  NSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQE 121

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            GI+PN++++SS+L  C  LS LQ GK++H L  +    +D    T LI  Y K GDLE 
Sbjct: 122 EGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLES 181

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F   + K + +WN MI G+A +G G + + L D M+  G+ PD+ITF ALL  C +
Sbjct: 182 AHKVFWSAE-KTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCKN 240

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           +GLV+ G + FD M NDYGI    +HY+CM DLLGRAG L EA D I+ MP KP  +++G
Sbjct: 241 SGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWG 300

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            +L +CR+H  ++ AE AA  LF L P N+A  YV + ++YA   +W+DV RI+  M   
Sbjct: 301 AMLGSCRIHGNIEFAEIAAKELFKLEPYNSAN-YVLMLSLYAMSNRWEDVDRIKDLMDTR 359

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            +     +SWI++   VH F +G   H +   I+ +L +L   +K  GY+PD+      +
Sbjct: 360 GIKPRQVWSWIQIDQRVHLFSAGGIPHQDEGEIYYELYQLVSELKKFGYLPDVNCVYQNI 419

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            EE K ++LL H+EKLAI +GLIK     PIRV KN R+C DCH A K IS +  REI +
Sbjct: 420 DEEEKVKMLLSHTEKLAITYGLIKTS-SAPIRVIKNTRICSDCHTAAKLISLVRSREIFL 478

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHFK G CSC DYW
Sbjct: 479 RDGVRFHHFKAGKCSCNDYW 498



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 33/307 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           M  K  V WNS+++G++  +G    A+ L +++ +    PD++++N +++   +      
Sbjct: 18  MKNKNIVAWNSLISGYS-FKGHFDHAKRLLNRMKEEGIKPDLITWNSLVAGYSMRG-HTK 75

Query: 57  AAFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            A      + I     +  SW  +ISG  Q  N +++ + F+ M E+     SA IS  +
Sbjct: 76  EALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLL 135

Query: 113 E-CGQ---LDKAVELFKVAPVKSVV----AWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
             CG    L K  E+  ++  KS +      TA+I  Y K G ++ A K+F     K L 
Sbjct: 136 RTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLESAHKVF-WSAEKTLA 194

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WN MI G+  N    + + LL  M   GI P+A + +++L GC +   ++ G +   ++
Sbjct: 195 SWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMM 254

Query: 225 FKSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQ 276
                  +   + P I  Y        + G L++A      +  K D   W AM+     
Sbjct: 255 ------SNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRI 308

Query: 277 HGKGEKA 283
           HG  E A
Sbjct: 309 HGNIEFA 315



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K   L  +  +F  ++ K++V WN++ISGY+  G  + A RL ++MK+EG+KPD IT
Sbjct: 1   MYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLIT 60

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPD--HYTCMVDLLGRAGKLVEAVDLI 358
           + +L+   +  G     +    ++++D  I+   P+   +T ++    + G   E+++  
Sbjct: 61  WNSLVAGYSMRGHTKEAL----ALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAF 116

Query: 359 KKMP---FKPQPAIFGTLLSAC 377
            +M     KP  A   +LL  C
Sbjct: 117 VQMQEEGIKPNSATISSLLRTC 138



 Score = 38.9 bits (89), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAF 59
           KT  +WN ++ GFA   G  ++   L D + +    PD +++  +LS    NS  V   +
Sbjct: 191 KTLASWNCMIMGFAIN-GCGREVIALLDGMQRAGILPDAITFTALLSG-CKNSGLVEEGW 248

Query: 60  DFFQRLP----IKDTASWNTMISGFVQKKN-MAKARDLFLAMPEKNSVS-WSAM-----I 108
             F  +     IK T    + ++  + +   + +A D    MP K   S W AM     I
Sbjct: 249 KCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRI 308

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
            G IE  ++  A ELFK+ P  S   +  M+S Y    + +  +++ D M T+ +
Sbjct: 309 HGNIEFAEI-AAKELFKLEPYNS-ANYVLMLSLYAMSNRWEDVDRIKDLMDTRGI 361


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 296/479 (61%), Gaps = 16/479 (3%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG-------YMKFGKVDLAE 152
           NS   +++IS Y+ C QL+ A ++     ++ V +WT  ++G       +M+ G+ ++A+
Sbjct: 45  NSSIAASLISTYVNCNQLNLAYQV-----IRQVFSWTVSLAGLNLVIDSFMRIGEYEIAK 99

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           K+F +MP +++VTWN+MI GYV N   E+ L+  + M+   + P+  + +SV+  C+ L 
Sbjct: 100 KVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLG 159

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L   + +H L+ +  +  +    + LI MY KCG +E A ++F  ++R DV  WN++I+
Sbjct: 160 ALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLIN 219

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG    A+ +F KM+ E + PDS+TF+ +L AC+H GLV  G +YFD M N Y I 
Sbjct: 220 GLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIK 279

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
            + +HY  MVDLLGRAG L EA  +I  MP +P   ++  LLSACR H+  +L E A  N
Sbjct: 280 PQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEVAVAN 339

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           +        +G YV L+NIY +  +WD+   +R  MKE  V K  G SW E   VVH FR
Sbjct: 340 I----SGPKSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFR 395

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           +GD+ HPE  ++++ L+ L +R KL G+VP  E  +  V EE KE+ L  HSEKLA+A+G
Sbjct: 396 AGDKSHPETEALYKILEGLIQRTKLEGFVPSTELVMMDVSEEEKEENLYHHSEKLALAYG 455

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++K   GT IR++KNLR+C DCH   K +S +  R II+RD  RFH F+ G+CSCGDYW
Sbjct: 456 ILKTSPGTEIRIYKNLRICYDCHNWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 110/233 (47%), Gaps = 16/233 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQL 117
           F ++P +D  +WN+MI G+V+     +A   F AM     E +  +++++I+     G L
Sbjct: 102 FCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGAL 161

Query: 118 DKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           + A  L  +   K +    +  +A+I  Y K G+++ A+++F+ +   ++  WN++I G 
Sbjct: 162 NHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGL 221

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPL 229
             +  A D + +   M    + P++ +   +L  CSH   ++ G++   L+       P 
Sbjct: 222 AVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQ 281

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 281
            +   A+  L+    + G L++A  +   +    DV+ W  ++S    H   E
Sbjct: 282 LEHYGAMVDLLG---RAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTE 331


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 302/541 (55%), Gaps = 41/541 (7%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---- 125
           T   NT++  + +   +  A  +F  M  +  V+W+++I+ Y   G  D+A+ LF     
Sbjct: 33  TTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR 92

Query: 126 --VAP---------------------------------VKSVVAWTAMISGYMKFGKVDL 150
             V+P                                   ++    A++  Y K G ++ 
Sbjct: 93  EGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMED 152

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A  +F EMP K++++WN MI GY +NS   + L L   M+ L ++P+ ++L+ +L  C+ 
Sbjct: 153 ANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACAS 211

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L+SL  GK+VH  + ++    D      L+ MY KCG    A  LF  I  KD++TW  M
Sbjct: 212 LASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVM 271

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I+GY  HG G  A+  F++M+  G++PD ++F+++L AC+H+GL+D G ++F+ M ++  
Sbjct: 272 IAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECN 331

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           +  K +HY C+VDLL R+GKL  A   IK MP +P   I+G LLS CR+H  + LAE  A
Sbjct: 332 VKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVA 391

Query: 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
            ++F L P N  G YV LAN YA  +KW++V ++R  +    + K PG SWIEV + VH 
Sbjct: 392 EHVFELEPEN-TGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHI 450

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
           F +G+  HP+   I   LK L  +MK  GY P   +AL       KE  L  HSEKLA+A
Sbjct: 451 FLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMA 510

Query: 511 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
           FG++ +P    IRV KNLRVCGDCH   K+IS    REI++RD+ RFHHFKDG C C  +
Sbjct: 511 FGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGF 570

Query: 571 W 571
           W
Sbjct: 571 W 571



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 7/241 (2%)

Query: 129 VKSVVAW-----TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           VK+ V W       ++  Y K G +D A  +FD M  + +VTW ++IA Y     +++ +
Sbjct: 25  VKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAI 84

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           +L   M   G+ P+  ++++VL  C+   SL+ GK VH  + ++ +  +      L+ MY
Sbjct: 85  RLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMY 144

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +EDA  +FLE+  KD+++WN MI GY+++    +AL LF  M  E MKPD  T  
Sbjct: 145 AKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLA 203

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
            +L AC     +D G +    ++ + G  +       +VD+  + G  V A  L   +P 
Sbjct: 204 CILPACASLASLDRGKEVHGHILRN-GFFSDQQVANALVDMYVKCGVPVLARLLFDMIPT 262

Query: 364 K 364
           K
Sbjct: 263 K 263



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 154/360 (42%), Gaps = 64/360 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           M+V+T V W S++A +A++ G   +A  LF ++ +    PD+ +   +L     N   + 
Sbjct: 59  MSVRTVVTWTSLIAAYARE-GLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNG-SLE 116

Query: 57  AAFDFFQRLPIKDTAS----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              D    +   D  S     N ++  + +  +M  A  +FL MP K+ +SW+ MI GY 
Sbjct: 117 NGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYS 176

Query: 113 ECGQLDKAVELF-----KVAPVKSVVAW-------------------------------- 135
           +    ++A+ LF     ++ P  + +A                                 
Sbjct: 177 KNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQV 236

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             A++  Y+K G   LA  LFD +PTK+L+TW  MIAGY  + +  + +     M   GI
Sbjct: 237 ANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGI 296

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCG 247
            P+  S  S+L  CSH   L  G +   ++      +D   + P       ++ +  + G
Sbjct: 297 EPDEVSFISILYACSHSGLLDEGWRFFNVM------QDECNVKPKLEHYACIVDLLARSG 350

Query: 248 DLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            L  A K    +    D   W A++SG   H   + A ++ + + +  ++P++  +  LL
Sbjct: 351 KLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFE--LEPENTGYYVLL 408



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           + S+L  C++   + LG+ VH    K+ +   TT    L+ MY KCG L+ A  +F  + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            + VVTW ++I+ YA+ G  ++A+RLF +M  EG+ PD  T   +L AC   G ++ G  
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 321 YFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 364
             + +  +     + + + C  ++D+  + G + +A  +  +MP K
Sbjct: 121 VHNYIREN---DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK 163



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 148/350 (42%), Gaps = 63/350 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++  +AK  G ++DA  +F ++P  D++S+N M+     NS  ++ ++ F        
Sbjct: 138 NALMDMYAKC-GSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMK 196

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVEL 123
            D  +   ++       ++ + +++   +      S     +A++  Y++CG    A  L
Sbjct: 197 PDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLL 256

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWA 179
           F + P K ++ WT MI+GY   G  + A   F+EM    +    V++ +++     +   
Sbjct: 257 FDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLL 316

Query: 180 EDGLKLLRMMI---------------------------------GLGIRPNASSLSSVLL 206
           ++G +   +M                                   + I P+A+   ++L 
Sbjct: 317 DEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLS 376

Query: 207 GCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV- 264
           GC     ++L ++V + VF+  P  ++T     L + Y +    E+  KL  +I R+ + 
Sbjct: 377 GCRIHHDVKLAEKVAEHVFELEP--ENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLK 434

Query: 265 ----VTW-------NAMISGYAQHGKGEKA----LRLFDKMKDEGMKPDS 299
                +W       +  ++G + H + +K      RL  KMK+EG  P +
Sbjct: 435 KNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKT 484


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/439 (44%), Positives = 282/439 (64%), Gaps = 5/439 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG--LG 193
           T +I  Y K G V  AE +F  MP +N+V+W+AMI  Y +N    D ++L + M+     
Sbjct: 218 TTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDAD 277

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + PN+ ++ SVL  C+ +++L  GK +H  + +       + L  L++MY +CG LE   
Sbjct: 278 LVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGR 337

Query: 254 KLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +F  I  R+DVV+WN++ISGY  HG G +A+++F++M   G  P  ITF+++L AC+HA
Sbjct: 338 HIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHA 397

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G   F+SMV +YG+  + +HY CMVDLLGRAG+L EA++LI+ M  +P P ++G 
Sbjct: 398 GLVNEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGA 456

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL ACR+H  ++ AE A  +LF+L P NA G YV LA+IYA  K  + V  ++  ++E+ 
Sbjct: 457 LLGACRIHGHVEYAEIACSHLFDLEPRNA-GNYVLLADIYARAKLHNQVGVLKELLEEHA 515

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K+ G SWIEV   +H F S D  +P +  +   + E   +MK  GYVPD    L+ + 
Sbjct: 516 LEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIE 575

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
            E KE++L+ HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS   +REI+VR
Sbjct: 576 GEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVR 635

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF+DG CSCGDYW
Sbjct: 636 DVNRFHHFRDGVCSCGDYW 654



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 19/224 (8%)

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A  +F+  P  S    T +I  Y   G +  A ++FDE P KN+  WNA++        
Sbjct: 99  EADPVFRSDPFLS----TRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADH 154

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGC-----SHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++ L  L  M  LG+  ++ S +  L  C     SH  +    ++VH    +      T
Sbjct: 155 GDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHT 214

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--K 291
              T LI  Y K G +  A  +F  +  ++VV+W+AMI  YA++ +   A+ LF  M   
Sbjct: 215 HVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMAS 274

Query: 292 DEGMKPDSITFVALLLAC------NHAGLVDLGI--QYFDSMVN 327
           D  + P+SIT V++L AC      +H  L+   I  + FDS+V+
Sbjct: 275 DADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVS 318



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 109/253 (43%), Gaps = 43/253 (16%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
            T+I  + +   +  A  +F AMPE+N VSWSAMI  Y +  +   A+ELFK        
Sbjct: 218 TTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDAD 277

Query: 126 --------------VAPVKS-------------------VVAWTAMISGYMKFGKVDLAE 152
                          A V +                   V    A+++ YM+ G +++  
Sbjct: 278 LVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGR 337

Query: 153 KLFDEM-PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            +F  +   +++V+WN++I+GY  + +  + +++   MI +G  P+  +  SVL  CSH 
Sbjct: 338 HIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHA 397

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAM 270
             +  GK + + + +  +         ++ +  + G L++A +L   +        W A+
Sbjct: 398 GLVNEGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGAL 457

Query: 271 ISGYAQHGKGEKA 283
           +     HG  E A
Sbjct: 458 LGACRIHGHVEYA 470


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/508 (41%), Positives = 293/508 (57%), Gaps = 17/508 (3%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV--------ELF 124
           +N +ISG+     ++ A  +F  M E      S  I G +    + + +        E  
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           K      V    + I+ YMK G V+   +LFDEMP K L+TWNA+I+GY +N  A D L+
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 240

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L   M   G+ P+  +L SVL  C+HL + ++G++V +LV  +    +      LISMY 
Sbjct: 241 LFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYA 300

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           +CG+L  A  +F  +  K +V+W AMI  Y  HG GE  L LFD M   G++PD   FV 
Sbjct: 301 RCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVM 360

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           +L AC+H+GL D G++ F +M  +Y +   P+HY+C+VDLLGRAG+L EA++ I  MP +
Sbjct: 361 VLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVE 420

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
           P  A++G LL AC++HK +D+AE A   +    P N  G YV ++NIY+  K  + + RI
Sbjct: 421 PDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMN-IGYYVLMSNIYSDSKNQEGIWRI 479

Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR-MKLAGYVPD 483
           R+ M+E    K PGYS++E    VH F +GDR H +   +H  L ELE   M+LAG + D
Sbjct: 480 RVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM-D 538

Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
            +      GEEV       HSE+LAIAFG++    GT I V KNLRVC DCH   K +S 
Sbjct: 539 CD-----RGEEVSSTTRE-HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSK 592

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I  R  +VRD +RFH+FKDG CSC DYW
Sbjct: 593 IVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 3/231 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNL--VTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           TA+IS Y K G V+ A K+F+E P  +   V +NA+I+GY  NS   D   + R M   G
Sbjct: 89  TALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETG 148

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  ++ ++  ++  C+    L LG+ +H    K     +   L   I+MY KCG +E   
Sbjct: 149 VSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGR 208

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +LF E+  K ++TWNA+ISGY+Q+G     L LF++MK  G+ PD  T V++L +C H G
Sbjct: 209 RLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLG 268

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              +G Q    +V   G A        ++ +  R G L +A  +   MP K
Sbjct: 269 AKKIG-QEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVK 318



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
            +WN  +      S   + + L R M+  G  P+A S   +L  C+ LS    G+Q+H  
Sbjct: 16  TSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV--VTWNAMISGYAQHGKGE 281
           V +     +   LT LISMYCKCG +EDA K+F E        V +NA+ISGY  + K  
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
            A  +F +MK+ G+  DS+T + L+  C     + LG       V   G  ++       
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG-GTYSEVAVLNSF 194

Query: 342 VDLLGRAGKLVEAVDLIKKMPFK 364
           + +  + G +     L  +MP K
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVK 217



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 155/399 (38%), Gaps = 85/399 (21%)

Query: 21  GKLKDAQELFDKIPQPDV--VSYNIMLSCILLNSDDVVAAFDFFQRL------------- 65
           G ++DA+++F++ P      V YN ++S    NS    AAF  F+R+             
Sbjct: 99  GLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAF-MFRRMKETGVSVDSVTIL 157

Query: 66  ---PI-----------------------KDTASWNTMISGFVQKKNMAKARDLFLAMPEK 99
              P+                        + A  N+ I+ +++  ++   R LF  MP K
Sbjct: 158 GLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVK 217

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK------VAP------------------------- 128
             ++W+A+ISGY + G     +ELF+      V P                         
Sbjct: 218 GLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVG 277

Query: 129 --------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
                     +V    A+IS Y + G +  A  +FD MP K+LV+W AMI  Y  +   E
Sbjct: 278 ELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGE 337

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPL 239
            GL L   MI  GIRP+ +    VL  CSH      G ++ + + +   L       + L
Sbjct: 338 TGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCL 397

Query: 240 ISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           + +  + G L++A +    +    D   W A++     H   + A   F K+ +   +P 
Sbjct: 398 VDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPM 455

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           +I +  L+           GI     M+ +     KP +
Sbjct: 456 NIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 494



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 18/136 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNS--- 52
           M VK  + WN+V++G++ Q G   D  ELF+++      PD  +  +++ SC  L +   
Sbjct: 214 MPVKGLITWNAVISGYS-QNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 272

Query: 53  ----DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
                ++V A  F   + +      N +IS + +  N+AKAR +F  MP K+ VSW+AMI
Sbjct: 273 GQEVGELVEANGFAPNVFLS-----NALISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 327

Query: 109 SGYIECGQLDKAVELF 124
             Y   G  +  + LF
Sbjct: 328 GCYGMHGMGETGLTLF 343



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           N++++ +A+  G L  A+ +FD +P   +VS+  M+ C  ++   +  +  FD   +  I
Sbjct: 293 NALISMYARC-GNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGI 351

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAV 121
           + D A +  ++S         K  +LF AM      E     +S ++      G+LD+A+
Sbjct: 352 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 411

Query: 122 ELFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMIAGYVENS 177
           E     PV+   A W A++        VD+AE  F    E    N + +  +++    +S
Sbjct: 412 EFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMN-IGYYVLMSNIYSDS 470

Query: 178 WAEDGLKLLRMMI 190
             ++G+  +R+M+
Sbjct: 471 KNQEGIWRIRVMM 483


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 312/486 (64%), Gaps = 6/486 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M ++  V+WN+++ G+A+  G  + A +LF ++P+ +VVS+N +++  L+    +  A  
Sbjct: 90  MPLRNVVSWNTMVDGYARN-GLTQQALDLFRRMPERNVVSWNTIITA-LVQCGRIEDAQR 147

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++  +D  SW TM++G  +   +  AR LF  MP +N VSW+AMI+GY +  +LD+A
Sbjct: 148 LFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEA 207

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++LF+  P + + +W  MI+G+++ G+++ AEKLF EM  KN++TW AM+ GYV++  +E
Sbjct: 208 LQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSE 267

Query: 181 DGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + L++ ++M+    ++PN  +  +VL  CS L+ L  G+Q+HQ++ K+     T  ++ L
Sbjct: 268 EALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSAL 327

Query: 240 ISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           I+MY KCG+L  A K+F +  + ++D+++WN MI+ YA HG G++A+ LF++M++ G+  
Sbjct: 328 INMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCA 387

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
           + +TFV LL AC+H GLV+ G +YFD ++ +  I  + DHY C+VDL GRAG+L EA ++
Sbjct: 388 NDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNI 447

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I+ +  +    ++G LL+ C VH   D+ +  A  +  + P N AG Y  L+N+YA++ K
Sbjct: 448 IEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQN-AGTYSLLSNMYASVGK 506

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
           W + A +R+ MK+  + K PG SWIEVG  V  F  GD+ H +   +   L +L  +MK 
Sbjct: 507 WKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPHSQYEPLGHLLHDLHTKMKK 566

Query: 478 AGYVPD 483
           AG +PD
Sbjct: 567 AGDMPD 572



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 176/311 (56%), Gaps = 44/311 (14%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           W +++ G+ K  G +++A++LFD+   + +VV++  M++   +  + V  A   F  +P+
Sbjct: 35  WTTMITGYLKC-GMIREARKLFDRWDAKKNVVTWTAMVNG-YIKFNQVKEAERLFYEMPL 92

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           ++  SWNTM+ G+ +     +A DLF  MPE+N VSW+ +I+  ++CG+++ A  LF   
Sbjct: 93  RNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQM 152

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
             + VV+WT M++G  K G+V+ A  LFD+MP +N+V+WNAMI GY +N   ++ L+L +
Sbjct: 153 KDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQ 212

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M      P                                  +D  +   +I+ + + G
Sbjct: 213 RM------PE---------------------------------RDMPSWNTMITGFIQNG 233

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 306
           +L  A KLF E+Q K+V+TW AM++GY QHG  E+ALR+F KM     +KP++ TFV +L
Sbjct: 234 ELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVL 293

Query: 307 LACNH-AGLVD 316
            AC+  AGL +
Sbjct: 294 GACSDLAGLTE 304



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 164/309 (53%), Gaps = 22/309 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSV 132
           N  IS   ++  +  AR +F  MPE++   W+ MI+GY++CG + +A +LF +    K+V
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V WTAM++GY+KF +V  AE+LF EMP +N+V+WN M+ GY  N   +  L L R M   
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            +  + +++ + L+ C  +          Q +F     +D  + T +++   K G +EDA
Sbjct: 125 NV-VSWNTIITALVQCGRIEDA-------QRLFDQMKDRDVVSWTTMVAGLAKNGRVEDA 176

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
             LF ++  ++VV+WNAMI+GYAQ+ + ++AL+LF +M +  M P   T +   +     
Sbjct: 177 RALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDM-PSWNTMITGFI---QN 232

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQPA 368
           G ++   + F  M     I      +T M+    + G   EA+ +  KM      KP   
Sbjct: 233 GELNRAEKLFGEMQEKNVIT-----WTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTG 287

Query: 369 IFGTLLSAC 377
            F T+L AC
Sbjct: 288 TFVTVLGAC 296



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 135/305 (44%), Gaps = 56/305 (18%)

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           IS   + G++D A K+F+EMP +++  W  MI GY                         
Sbjct: 8   ISRLCREGEIDYARKVFEEMPERDIGLWTTMITGY------------------------- 42

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
                  L C  +      ++  +L  +    K+    T +++ Y K   +++A +LF E
Sbjct: 43  -------LKCGMI------REARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYE 89

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  ++VV+WN M+ GYA++G  ++AL LF +M +  +    +++  ++ A    G ++  
Sbjct: 90  MPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNV----VSWNTIITALVQCGRIEDA 145

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
            + FD M  D  + +    +T MV  L + G++ +A  L  +MP +     +  +++   
Sbjct: 146 QRLFDQM-KDRDVVS----WTTMVAGLAKNGRVEDARALFDQMPVR-NVVSWNAMITGYA 199

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK--- 435
            ++RLD     A+ LF   P      +  +   +    + +   ++   M+E NV+    
Sbjct: 200 QNRRLD----EALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTA 255

Query: 436 -MPGY 439
            M GY
Sbjct: 256 MMTGY 260


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/470 (42%), Positives = 290/470 (61%), Gaps = 5/470 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I+ Y  CG    A + F       + +W A+I    K G + +A KLFD+MP KN++
Sbjct: 99  TSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVI 158

Query: 165 TWNAMIAGYVENSWAEDGLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           +W+ MI GYV     +  L L R    + G  +RPN  ++SSVL  C+ L +LQ GK VH
Sbjct: 159 SWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVH 218

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
             + K+ +  D    T LI MY KCG +E A  +F  +   KDV+ W+AMI+ ++ HG  
Sbjct: 219 AYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLS 278

Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           E+ L LF +M ++G++P+++TFVA+L AC H GLV  G +YF  M+N+YG++    HY C
Sbjct: 279 EECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGC 338

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400
           MVDL  RAG++ +A +++K MP +P   I+G LL+  R+H  ++  E A   L  L+PAN
Sbjct: 339 MVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPAN 398

Query: 401 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
           ++  YV L+N+YA + +W +V  +R  M+   + K+PG S +EV  V+ EF +GD  HPE
Sbjct: 399 SSA-YVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPE 457

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
           L++++  L E+ KR++  GY  +    L  + EE KE  L  HSEKLAIA+  ++   GT
Sbjct: 458 LLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGT 517

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
            IR+ KNLR+C DCH A K IS    REIIVRD  RFHHFK+G CSC DY
Sbjct: 518 TIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 133/273 (48%), Gaps = 21/273 (7%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A++ FD+I QPD+ S+N ++      +  +  A   F ++P K+  SW+ MI G+V    
Sbjct: 114 ARQAFDEITQPDLPSWNAIIHANA-KAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGE 172

Query: 86  MAKARDLFLAMP-------EKNSVSWSAMISGYIECGQLD--KAVELF--KVAPVKSVVA 134
              A  LF ++          N  + S+++S     G L   K V  +  K      VV 
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232

Query: 135 WTAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            T++I  Y K G ++ A+ +FD + P K+++ W+AMI  +  +  +E+ L+L   M+  G
Sbjct: 233 GTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDG 292

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDL 249
           +RPNA +  +VL  C H   +  G +  + +      SP+ +       ++ +Y + G +
Sbjct: 293 VRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGC---MVDLYSRAGRI 349

Query: 250 EDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 281
           EDA  +   +    DV+ W A+++G   HG  E
Sbjct: 350 EDAWNVVKSMPMEPDVMIWGALLNGARIHGDVE 382



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 12/197 (6%)

Query: 159 PTKNLVTWNAMIAG----YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           P      WN +I       V+N      L L   M    + P+  +   +L     +++ 
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLL---QSINTP 76

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             G+Q+H  +    L  D    T LI+MY  CG    A + F EI + D+ +WNA+I   
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           A+ G    A +LFD+M ++ +    I++  ++      G     +  F S+    G   +
Sbjct: 137 AKAGMIHIARKLFDQMPEKNV----ISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLR 192

Query: 335 PDHYTCMVDLLGRAGKL 351
           P+ +T M  +L    +L
Sbjct: 193 PNEFT-MSSVLSACARL 208


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/483 (40%), Positives = 298/483 (61%), Gaps = 4/483 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L  +    G+++DA  LF+++P  D  S+NI+L C L+ S  +  A  
Sbjct: 130 MAERNVVSWNTMLEAYTAV-GRVEDASALFNRMPVRDAGSWNILL-CGLVRSGSLERARK 187

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+R+P++D  SW TMISG  +  ++  A  LF AMPE+N VSW+AMISGY    ++++A
Sbjct: 188 MFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEA 247

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++LF   P++ V +W  MI+G+++   +  A +LFDEMP +N++TW  M+ GY++   +E
Sbjct: 248 LDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSE 307

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             LKL   M+  GI+PN  +    L  CS+L++L  G+QVHQ++ K+P   DT   + L+
Sbjct: 308 MALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLM 367

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG++  A  +F     KD+++WN +I+ YA HG G +A+ L+  M++ G KP+  
Sbjct: 368 NLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDA 427

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+V LL AC+HAGLVD G++ F+SMV D  I  + +HYTC+VDL  RAG+L +A  LI  
Sbjct: 428 TYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISW 487

Query: 361 MPFKPQPA-IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
              KP  + ++  LL  C  H    + + AA +L    P N AG Y  L NIYA+  KW 
Sbjct: 488 FKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDN-AGTYTLLCNIYASAGKWK 546

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           + A IR  M    + K PG SWIEV   VH F S D+ H E   I++ L+++ + M++AG
Sbjct: 547 EAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINDLLQDIHRIMRMAG 606

Query: 480 YVP 482
            VP
Sbjct: 607 TVP 609



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 124/218 (56%), Gaps = 9/218 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSV 132
           N  ++       ++ AR LF  MP+++ VSW+AM++ Y   G L +A  LF +    ++V
Sbjct: 45  NWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNV 104

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V WTA++SGY +  +VD AE LF+ M  +N+V+WN M+  Y      ED   L   M   
Sbjct: 105 VTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRM--- 161

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
            +R +A S + +L G     SL+  ++    +F+    +D  + T +IS   + G ++DA
Sbjct: 162 PVR-DAGSWNILLCGLVRSGSLERARK----MFERMPVRDVMSWTTMISGLARNGSVDDA 216

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
             LF  +  ++VV+WNAMISGYA++ + E+AL LF KM
Sbjct: 217 WVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKM 254



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 8/118 (6%)

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G + DA +LF  +  +DVV+W AM++ YA+ G  ++A  LFD+      + + +T+ ALL
Sbjct: 55  GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR---PDARRNVVTWTALL 111

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
                A  VD     F+ M     ++     +  M++     G++ +A  L  +MP +
Sbjct: 112 SGYARARRVDEAEALFEGMAERNVVS-----WNTMLEAYTAVGRVEDASALFNRMPVR 164


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/528 (41%), Positives = 325/528 (61%), Gaps = 17/528 (3%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKN-MAKARDLFLAMPEK----NSVSWSAMISGY- 111
            +++ F  +   D  SWN+++   V      A++ ++F  M       N V++  ++S   
Sbjct: 530  SWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALS 589

Query: 112  ----IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTW 166
                +E G+   AV L K   ++      A++S Y K G +D  E+LF  M   ++ V+W
Sbjct: 590  PLSVLELGKQVHAVVL-KHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSW 648

Query: 167  NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            N+MI+GY+ N   ++ +  + +M+      +  + S VL  C+ +++L+ G ++H    +
Sbjct: 649  NSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIR 708

Query: 227  SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
            S L  D    + L+ MY KCG ++ A K+F  + +K+  +WN+MISGYA+HG GEKAL +
Sbjct: 709  SQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEI 768

Query: 287  FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
            F++M+  G  PD +TFV++L AC+HAGLVD G+ YF+ M+ D+GI    +HY+C++DLLG
Sbjct: 769  FEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MMEDHGILPHIEHYSCVIDLLG 827

Query: 347  RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK---RLDLAEFAAMNLFNLNPANAAG 403
            RAGKL++  + I +MP KP   I+ T+L ACR  K   R+DL + A+  L  L P N   
Sbjct: 828  RAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVN 887

Query: 404  CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
             YV  +N YAA  +W+D A+ R +M    + K  G SW+ +G  VH F +GDR HP    
Sbjct: 888  -YVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKE 946

Query: 464  IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
            I+EKL  L +++K AGYVP  EFAL+ + EE KE+LL +HSEKLA+AF L +     PIR
Sbjct: 947  IYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIR 1006

Query: 524  VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            + KNLRVCGDCH A +YIS I  R+II+RD+ RFHHF+DG CSCGDYW
Sbjct: 1007 IMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 170/374 (45%), Gaps = 57/374 (15%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--------QPDVVSYNIMLSCILLNSDD 54
           V+  + WN++++ +AK +G +     LF  +         +P+  ++  +++   L+S  
Sbjct: 227 VRDLITWNALMSVYAK-KGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCS 285

Query: 55  VVAAFDFFQRLPIKDTAS----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                  F R+    ++S     + ++S F +   + +A+D+F+ + E+N+V+ + +I G
Sbjct: 286 SGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVG 345

Query: 111 YIECGQLDKAVELFK-------------VAPVKSVVAWT--------------------- 136
            ++    ++AV +F              V  + +V  ++                     
Sbjct: 346 LVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGL 405

Query: 137 ---------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                     +++ Y K G +D A ++F  +  ++ V+WN +I+   +N + E  +    
Sbjct: 406 IDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYC 465

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           MM    I P+  +  S L  C+ L  L  G+QVH    K  L  DT+    L+ MY  CG
Sbjct: 466 MMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCG 525

Query: 248 DLEDACKLFLEIQRKDVVTWNAMIS-GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
              ++ ++F  +   D+V+WN+++    + H    +++ +F  M   G+ P+ +TFV LL
Sbjct: 526 ARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLL 585

Query: 307 LACNHAGLVDLGIQ 320
            A +   +++LG Q
Sbjct: 586 SALSPLSVLELGKQ 599



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 147/326 (45%), Gaps = 28/326 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV--------SWSAMIS 109
           A   F   P++D  +WN ++S + +K  +     LF+AM   +S         ++ ++I+
Sbjct: 218 AQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLIT 277

Query: 110 GY----IECGQLDKA-VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                    G LD+    + K      +   +A++S + + G +D A+ +F  +  +N V
Sbjct: 278 ATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAV 337

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP----NASSLSSVLLGCSHLS----SLQL 216
           T N +I G V+   +E+ + +      +G R     N  +   +L   +  S     L  
Sbjct: 338 TLNGLIVGLVKQHCSEEAVGIF-----MGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMR 392

Query: 217 GKQVHQLVFKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           G++VH  + ++ L     AL+  L++MY KCG ++ A ++F  +  +D V+WN +IS   
Sbjct: 393 GREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLD 452

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
           Q+G  E A+  +  M+   + P +   ++ L +C    L+  G Q     V  +G+    
Sbjct: 453 QNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVK-WGLDLDT 511

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKM 361
                +V + G  G   E+ ++   M
Sbjct: 512 SVSNALVKMYGDCGARSESWEIFNSM 537



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 23/277 (8%)

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           +EL K      +     +++ Y K  ++  A ++FD M  +N V+W  +++GYV +   +
Sbjct: 80  LELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITD 139

Query: 181 DGLKLLRMMIGLG---IRPNASSLSSVLLGCSHLSS--LQLGKQVHQLVFKSPLCKDTTA 235
           +  ++ + M+  G    RP   +  SVL  C       L    QVH LV K+    +TT 
Sbjct: 140 EAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTV 199

Query: 236 LTPLISMY--CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              LISMY  C  G    A ++F     +D++TWNA++S YA+ G       LF  M  +
Sbjct: 200 CNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHD 259

Query: 294 G----MKPDSITFVALLLACN----HAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVD 343
                ++P+  TF +L+ A +     +G++D   Q F  ++      +  D Y  + +V 
Sbjct: 260 DSAIELRPNEHTFGSLITATSLSSCSSGVLD---QVFARVLKS---GSSSDLYVGSALVS 313

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
              R G L EA D+   +  +    + G ++   + H
Sbjct: 314 AFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQH 350



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 47/352 (13%)

Query: 39  VSYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           +++++ LS  L+N       + AA   F  +  ++  SW  ++SG+V      +A  +F 
Sbjct: 87  LTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFK 146

Query: 95  AMPEKNS-------VSWSAMISGYIECGQ--LDKAVELF----KVAPVKSVVAWTAMIS- 140
           AM  + S        ++ +++    + G   L  AV++     K     +     A+IS 
Sbjct: 147 AMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISM 206

Query: 141 -GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI----GLGIR 195
            G    G    A+++FD  P ++L+TWNA+++ Y +  +      L   M+     + +R
Sbjct: 207 YGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELR 266

Query: 196 PNASSLSSVLLGCSHLSSLQLG--KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           PN  +  S++   S LSS   G   QV   V KS    D    + L+S + + G L++A 
Sbjct: 267 PNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAK 325

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-- 311
            +F+ ++ ++ VT N +I G  +    E+A+ +F   +D     ++ TFV LL A     
Sbjct: 326 DIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDS-FVVNTDTFVVLLSAVAEFS 384

Query: 312 ------------------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
                              GL+DL I   + +VN Y      D  + +  LL
Sbjct: 385 IPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLL 436



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +++H  + K  L  D      L+++Y K   L  A ++F  +  ++ V+W  ++SGY   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 278 GKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAG 313
           G  ++A R+F  M  EG    +P   TF ++L AC  AG
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 330/586 (56%), Gaps = 40/586 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++  +AK  GK++DA ++F+++   DVV++N M++    N   +D ++ F   +   I
Sbjct: 78  NALVDMYAKC-GKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKI 136

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL--DKA 120
           + D  +W+++ISG+ Q+    +A D+F  M       N V+  +++S     G L   K 
Sbjct: 137 ELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKE 196

Query: 121 VELFKVAPV---------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAM 169
              + V  +           +    A+I  Y K   +++A  +FDE+  K+  +VTW  M
Sbjct: 197 THCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVM 256

Query: 170 IAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           I GY ++  A   L+L   M  +   I PN  ++S VL+ C+ L++L+ GKQ+H  V + 
Sbjct: 257 IGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRR 316

Query: 228 PLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
                        LI MY K GD++ A  +F  + +++ V+W ++++GY  HG    AL 
Sbjct: 317 SRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGA---ALV 373

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           L           D ITF+ +L AC+H+G+VD GI  F  M  D+ +    +HY CM DL 
Sbjct: 374 L-----------DGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLF 422

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GRAG+L EA  LI  M  +P P ++  LLSACR H   +LAEFAA  L  L   N  G Y
Sbjct: 423 GRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADND-GTY 481

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
             L+NIYA  ++W DVARIR  MK   + K PG+SW++    +  F  GDR H +   I+
Sbjct: 482 TLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQKIY 541

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           E L +L KR+K  GYVP   F+LH V +E K   LL HSEKLA+A+ ++ +P G PIR+ 
Sbjct: 542 ETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTLPPGAPIRIT 601

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLR+CGD H A  YIS I + EII+RD++RFH FK+G+CSC  YW
Sbjct: 602 KNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 153/347 (44%), Gaps = 68/347 (19%)

Query: 101 SVSWSAMISGYIECGQLDKAVELFK-----------------VAPVKSVVAW---TAMIS 140
           SVSW++++S Y  C   + AV LF+                 + PV   + +    A++ 
Sbjct: 23  SVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGFFVGNALVD 82

Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL--------------- 185
            Y K GK++ A K+F+ M  K++VTWNAM+ GY +N   ED L L               
Sbjct: 83  MYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVT 142

Query: 186 --------------------LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH---- 221
                                R M G   RPN  +L S+L  C+ + +L  GK+ H    
Sbjct: 143 WSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSV 202

Query: 222 QLVFKSPLCKDT---TALTPLISMYCKCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQ 276
           + + K     DT     +  LI MY KC  LE A  +F EI  + +DVVTW  MI GYAQ
Sbjct: 203 KFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQ 262

Query: 277 HGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           HG    AL+LF +M   D  + P+  T   +L+AC     +  G Q    ++    I + 
Sbjct: 263 HGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSD 322

Query: 335 PDHY-TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
                 C++D+  ++G +  A  +   M  K     + +LL+   +H
Sbjct: 323 VLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLLTGYGMH 368



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 141/362 (38%), Gaps = 107/362 (29%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLS------CILLNSDDVV 56
           V W+SV++G+A QRG   +A ++F ++     +P+VV+   +LS       +L   +   
Sbjct: 141 VTWSSVISGYA-QRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHC 199

Query: 57  AAFDFF----QRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISG 110
            +  F           D A  N +I  + + K++  AR +F  +   +++ V+W+ MI G
Sbjct: 200 YSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGG 259

Query: 111 YIECGQLDKAVELF-----------------------------------------KVAPV 129
           Y + G  + A++LF                                         + + +
Sbjct: 260 YAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRI 319

Query: 130 KSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            S V + A  +I  Y K G VD A+ +FD M  +N V+W +++ GY              
Sbjct: 320 DSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGY-------------- 365

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M G  +  +  +   VL  CSH   +  G  +   + K  +      + P +  Y    
Sbjct: 366 GMHGAALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFV------VDPGVEHYACMA 419

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           DL                        + + G+  +A RL + M    M+P  + ++ALL 
Sbjct: 420 DL------------------------FGRAGRLCEATRLINDMS---MEPTPVVWIALLS 452

Query: 308 AC 309
           AC
Sbjct: 453 AC 454


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/524 (39%), Positives = 310/524 (59%), Gaps = 16/524 (3%)

Query: 26  AQELFDKIPQ--PDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLP----IKDTASWNTMI 77
           AQ++F+ + +  P+   +N   SC+  L   D  + A   F RL       DT + ++++
Sbjct: 79  AQQIFECVEKQKPETFVWN---SCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 135

Query: 78  SGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
              +   +++  R L   + +     N    + ++  Y  CG++ +A  LF+  P + VV
Sbjct: 136 RACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVV 195

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
            W  MI+  +K G  + A  LF  MP +N+ +W +MIAGYV+   A++ + L   M   G
Sbjct: 196 TWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG 255

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           ++ N  ++ +VL  C+ L +L LG ++H+   +    ++      LI MY KCG LE+AC
Sbjct: 256 VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEAC 315

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           K+F E++ + VV+W+AMI G A HG+ E+ALRLF  M   G++P+ +TF+ LL AC+H G
Sbjct: 316 KVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMG 375

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L+  G ++F SM  DYGI  + +HY CMVDLL RAG L EA + I  MP KP   ++G L
Sbjct: 376 LISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGAL 435

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L ACRVHK +++AE A  +L  L+P N  G YV L+NIYA   +W+D AR+R  MK+  V
Sbjct: 436 LGACRVHKNVEMAEEAIKHLLELDPLN-DGYYVVLSNIYAEAGRWEDTARVRKFMKDRQV 494

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG+S I V  VVHEF +G+  HP+   I ++ +EL + M+L GYVP+    L  + E
Sbjct: 495 KKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEE 554

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 537
             K + +  HSEKLA+ FGL+  P  TPIR+ KNLR+C DCH A
Sbjct: 555 GEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSA 598



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 145/279 (51%), Gaps = 23/279 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ +A+ LF+K+PQ DVV++NIM++  L+   D   A+D F R+P ++  SW +MI+G+
Sbjct: 177 GEMGEARLLFEKMPQRDVVTWNIMIA-QLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGY 235

Query: 81  VQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV----KSV 132
           VQ     +A  LF  M E     N V+  A+++   + G LD  + + + +      ++V
Sbjct: 236 VQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNV 295

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
                +I  Y+K G ++ A K+F+EM  + +V+W+AMI G   +  AE+ L+L   M  +
Sbjct: 296 RISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQV 355

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-------CK 245
           GI PN  +   +L  CSH+  +  G++     F + + +D   + P I  Y        +
Sbjct: 356 GIEPNGVTFIGLLHACSHMGLISEGRR-----FFASMTRD-YGIIPQIEHYGCMVDLLSR 409

Query: 246 CGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKA 283
            G L +A +  L +  K + V W A++     H   E A
Sbjct: 410 AGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 448


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 308/527 (58%), Gaps = 10/527 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMIS 109
           D+  AF  F  +P  D   W+ MI+ F Q     KA D+F+ M E     N  + S++++
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILN 356

Query: 110 GYI--ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           G    +C  L + +   + KV     V    A+I  Y K  K+D A KLF E+ +KN+V+
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVS 416

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN +I GY         L + R  +   +     + SS L  C+ L+S++LG QVH L  
Sbjct: 417 WNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAI 476

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K+   K       LI MY KCGD++ A  +F E++  DV +WNA+ISGY+ HG G +ALR
Sbjct: 477 KTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALR 536

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +FD MK    KP+ +TF+ +L  C++AGL+D G   F+SM+ D+GI    +HYTCMV L 
Sbjct: 537 IFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLF 596

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR+G+L +A++LI+ +P++P   I+  +LSA       + A  +A  +  +NP + A  Y
Sbjct: 597 GRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEA-TY 655

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L+N+YA  K+W +VA IR SMKE  V K PG SWIE    VH F  G   HP++  I+
Sbjct: 656 VLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLIN 715

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRV 524
             L+ L  +   AGYVPD    L  + +E K++ L  HSE+LA+A+GL+++P     I +
Sbjct: 716 GMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILI 775

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K IS+I +R++++RD  RFHHF  G CSC D+W
Sbjct: 776 MKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 27/339 (7%)

Query: 42  NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           N  +   L+N+  V  + D     F+ +  KD   W  ++S +V+      +  L   M 
Sbjct: 180 NAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMG 239

Query: 98  EK----NSVSWSAMISGYIECG--QLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVD 149
                 N+ ++   +   I  G     K+V  ++ K            ++  Y + G + 
Sbjct: 240 MDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMS 299

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGC 208
            A K+F+EMP  ++V W+ MIA + +N +    + + +RM  G  + PN  +LSS+L GC
Sbjct: 300 DAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGF-VVPNEFTLSSILNGC 358

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           +      LG+Q+H LV K     D      LI +Y KC  ++ A KLF E+  K+VV+WN
Sbjct: 359 AIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWN 418

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            +I GY   G+G KAL +F +     +    +TF + L AC     ++LG+Q        
Sbjct: 419 TVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQV------- 471

Query: 329 YGIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKM 361
           +G+A K ++         ++D+  + G +  A  +  +M
Sbjct: 472 HGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEM 510



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 153/363 (42%), Gaps = 46/363 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N +L  + K  G  KDA  LFD++P+ + VSY  +         D V  +    R   + 
Sbjct: 88  NILLNAYVKA-GFDKDALNLFDEMPERNNVSYVTLTQGYACQ--DPVGLYSRLHREGHEL 144

Query: 69  DTASWNTMISGFVQKKNMAKARDLF-LAMP------EKNSVSWSAMISGYIECGQLDKAV 121
           +   + + +  FV   ++ KA   + L  P      + N+   +A+I+ Y  CG +D A 
Sbjct: 145 NPHVFTSFLKLFV---SLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            +F+    K +V W  ++S                                YVEN   ED
Sbjct: 202 SVFEGILCKDIVVWAGIVS-------------------------------CYVENGCFED 230

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+LL  M   G  PN  +  + L     L +    K VH  + K+    D      L+ 
Sbjct: 231 SLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQ 290

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y + GD+ DA K+F E+ + DVV W+ MI+ + Q+G   KA+ +F +M++  + P+  T
Sbjct: 291 LYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFT 350

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             ++L  C       LG Q    +V   G          ++D+  +  K+  AV L  ++
Sbjct: 351 LSSILNGCAIGKCSGLGEQ-LHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAEL 409

Query: 362 PFK 364
             K
Sbjct: 410 SSK 412



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 40/302 (13%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P  D+ ++ TM+   ++K +   A+ +   + +K S                   ++LF
Sbjct: 44  VPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGS------------------CLDLF 85

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                    A   +++ Y+K G    A  LFDEMP +N V++  +  GY      +D + 
Sbjct: 86  ---------ATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQDPVG 132

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
           L   +   G   N    +S L     L   ++   +H  + K     +      LI+ Y 
Sbjct: 133 LYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYS 192

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            CG ++ A  +F  I  KD+V W  ++S Y ++G  E +L+L  +M  +G  P++ TF  
Sbjct: 193 VCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDT 252

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKK 360
            L A      + LG  +F   V+   +       P     ++ L  + G + +A  +  +
Sbjct: 253 ALKAS-----IGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 361 MP 362
           MP
Sbjct: 308 MP 309



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 67/311 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++ K  V+WN+V+ G+ +  G+   A  +F +  +  V    +  S  L     +     
Sbjct: 409 LSSKNVVSWNTVIVGY-ENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLA---- 463

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                    +      + G   K N AK          + +VS +++I  Y +CG +  A
Sbjct: 464 ---------SMELGVQVHGLAIKTNNAK----------RVAVS-NSLIDMYAKCGDIKVA 503

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             +F       V +W A+ISGY   G    A ++FD                        
Sbjct: 504 QTVFNEMETIDVASWNALISGYSTHGLGRQALRIFD------------------------ 539

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA----- 235
                  +M G   +PN  +   VL GCS+   +  G    Q  F+S +C          
Sbjct: 540 -------IMKGSDCKPNGLTFLGVLSGCSNAGLIDQG----QDCFESMICDHGIEPCLEH 588

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
            T ++ ++ + G L+ A  L   I  +  V+ W AM+S        E A R  +++    
Sbjct: 589 YTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKIN 648

Query: 295 MKPDSITFVAL 305
            K D  T+V L
Sbjct: 649 PK-DEATYVLL 658



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 51/257 (19%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K +H  + K   C D  A   L++ Y K G  +DA  LF E+  ++ V++  +  GYA  
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA-- 126

Query: 278 GKGEKALRLFDKMKDEG--MKPDSIT-FVALLLACN--------HAGLVDLGIQYFDS-- 324
              +  + L+ ++  EG  + P   T F+ L ++ +        H+ +V LG   +DS  
Sbjct: 127 --CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLG---YDSNA 181

Query: 325 -----MVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKM--- 361
                ++N Y +    D                +  +V      G   +++ L+ +M   
Sbjct: 182 FVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMD 241

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL----FNLNPANAAGCYVQLANIYAAMKK 417
            F P    F T L A         A+     +    + L+P    G    L  +Y  +  
Sbjct: 242 GFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG----LLQLYTQLGD 297

Query: 418 WDDVARIRLSMKENNVV 434
             D  ++   M +N+VV
Sbjct: 298 MSDAFKVFNEMPKNDVV 314


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/479 (40%), Positives = 301/479 (62%), Gaps = 7/479 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           M  +  V+WNS++AG     G L  A   F   P+ +V ++N ML+ +L    +DD   A
Sbjct: 75  MPSRDVVSWNSIIAGCLAH-GDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADD---A 130

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
              F  +P ++  S+ TM+ G  ++  +A+AR++F AMP++N VSW+AMISGY+E G   
Sbjct: 131 DRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFV 190

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           +A +LF+  P K+VVA TAMI+ Y K G V+ A +LFD +  K++++WN MIAGYV N  
Sbjct: 191 EATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGH 250

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ ++L  +M   G++P+ ++L +VL  CS L+ L+ GK  H +  K+ L    +    
Sbjct: 251 GEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNA 310

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           L++MY KCG++ ++  +F+ ++ KD+V+WN +I+ YAQHGK +K + LF +M+  G+ PD
Sbjct: 311 LMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPD 370

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            ITF+++L AC H G VD  ++ FD M + Y I+ + +HY C+VD+L RAG+L +A   I
Sbjct: 371 DITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYI 430

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           K MP + +  ++G+LL AC++H  + L E AA  L   + + ++G YV L+NIYAA   W
Sbjct: 431 KDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQ-SDSESSGPYVILSNIYAAAGMW 489

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477
             V ++R  MKE  V K PGYSW E+   VH F  GD  HPE+  I  +L+++   M++
Sbjct: 490 GQVNQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGDASHPEMRKIISELRKISFHMRM 548


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/426 (44%), Positives = 268/426 (62%), Gaps = 1/426 (0%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A K+FDEM   + V+W+AMI GYV    + D + L R M   G+ P+  ++ SVL
Sbjct: 63  GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+ L +L+LGK V   V K  + K+      LI M+ KCGD++ A  LF  ++ +++V
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +W ++I G A HG+G +A+ +F++M   G+ PD + F+ LL AC+H+GLVD G +YFDSM
Sbjct: 183 SWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
             D+ I  K +HY CMVD+L RAG + EA+  +++MP  P P ++ TL++ACR H  L L
Sbjct: 243 RKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKL 302

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
            E     L    P + +  YV L+NIYA M  W+   RIR +M    + K+PG + IE+ 
Sbjct: 303 GEKITRQLIRNEPMHESN-YVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELD 361

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
             ++EF +GD+ H +   I+E + E+ K MK AGY+P     L  + +E KE  L  HSE
Sbjct: 362 NEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSE 421

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           KLAIAF L+  P GT IR+ KNLRVC DCH A+K+IS I  REI+VRD  RFHHFK+G C
Sbjct: 422 KLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLC 481

Query: 566 SCGDYW 571
           SC D+W
Sbjct: 482 SCRDFW 487



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----GDLED 251
           PN  +   VL  C+ + +L LGK VH  V K     +      L+ MYC C    G +E 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A K+F E+ + D V+W+AMI GY + G+   A+ LF +M+ +G+ PD IT V++L AC  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            G ++LG ++ +S V    +    +    ++D+  + G + +A +L + M
Sbjct: 128 LGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSM 176



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 46/264 (17%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA-------------- 134
           AR +F  M + +SVSWSAMI GY+  G+   A+ LF+   +K V                
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 135 --------W-----------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                   W                  A+I  + K G VD A  LF  M  +N+V+W ++
Sbjct: 128 LGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV 187

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-P 228
           I G   +    + + +   M+  G+ P+      +L  CSH   +  GK+    + K   
Sbjct: 188 IGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFS 247

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKAL 284
           +         ++ M C+ G +++A K   E+    + V W  +I+    HG+   GEK  
Sbjct: 248 IVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKIT 307

Query: 285 RLFDKMKDEGMKPDSITFVALLLA 308
           R    +++E M   +   ++ + A
Sbjct: 308 RQL--IRNEPMHESNYVLLSNIYA 329


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 302/520 (58%), Gaps = 13/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--------- 112
           F  + ++   SWNTMI+G+       +A  LF  M  + +      +S  I         
Sbjct: 115 FDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAI 174

Query: 113 -ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
            EC QL       K+A   +    TA++  Y K   +  A  +F++MP + LVTW+++ A
Sbjct: 175 NECKQLHTIA--LKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFA 232

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GYV+N   E+ L L R     G+     +LS++L  C+ L+    G Q+H ++ K     
Sbjct: 233 GYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHG 292

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           +      L+ +Y +CG +E A  LF  ++ K+VV WNAMI+ +++H    +A+ LF+KM+
Sbjct: 293 NFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQ 352

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G+ P+ +T++++L  C+HAGLV+ G  YF  +++D  +     HY+CMVD+LGR+GK 
Sbjct: 353 QLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKT 412

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA +L+ KMPF+P  +++G+LL +CR +  + LA  AA  LF L P N  G +V L+N+
Sbjct: 413 DEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDN-GGNHVLLSNV 471

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YAA   W++V   R  +K++   K  G SWIE    VH F  G+R HP +  I+ KL+E+
Sbjct: 472 YAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEI 531

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
              M+       +E  LH V  E KE+LL  HSEKLA++FGLI +P   PI + KNLR+C
Sbjct: 532 YHEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRIC 591

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K  + I +R +IVRDT RFHHFKDG+CSCGD+W
Sbjct: 592 GDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 151/321 (47%), Gaps = 16/321 (4%)

Query: 59  FDFFQRLPIKDTASWNTMISG-------FVQKKNMAKA-RDLFLAMPEKNSVSWSAMISG 110
           +  +  +    T S + + SG       F  K N + + +D  LA  ++N +  SA+   
Sbjct: 4   WSMYHAINPHSTGSLSVLCSGIYLAARSFCNKLNHSSSLKDRRLARIDRNLIDVSAISQR 63

Query: 111 YIECGQ-----LDKAVELFKV--APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
              C +     + K+     +    V   +    +I+ Y K G+ D A  +FD M  +++
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+WN MIAGY  +      LKL   M   G   +  +LSS +  C+   ++   KQ+H +
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
             K  L  ++   T ++ +Y KC  ++DAC +F ++  + +VTW+++ +GY Q+G  E+A
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEA 243

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           L LF   + EG++    T  A+L AC    L   GIQ   +++   G          +VD
Sbjct: 244 LHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQ-LHAVILKCGFHGNFFVAASLVD 302

Query: 344 LLGRAGKLVEAVDLIKKMPFK 364
           +  R G++ +A  L   M  K
Sbjct: 303 VYARCGQIEKAYALFAYMEHK 323



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 80/364 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V++ V+WN+++AG+    G+   A +LF ++ +         LS  +       A  +
Sbjct: 118 MHVRSIVSWNTMIAGYT-HSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINE 176

Query: 61  FFQ------RLPIKDTASWNTMISGFVQKKNMAK-ARDLFLAMPEKNSVSWSAMISGYIE 113
             Q      +L +   +   T I     K NM K A  +F  MPE+  V+WS++ +GY++
Sbjct: 177 CKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQ 236

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISG---------------------------- 141
            G  ++A+ LF+ A  + V       +A++S                             
Sbjct: 237 NGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFV 296

Query: 142 -------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
                  Y + G+++ A  LF  M  KN+V WNAMIA +  ++ + + + L   M  LGI
Sbjct: 297 AASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGI 356

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            PN  +  SVL  CSH   ++ G+      + S L  D T                    
Sbjct: 357 FPNEVTYLSVLSVCSHAGLVEKGRH-----YFSLLMSDRTV------------------- 392

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
                   +V+ ++ M+    + GK ++A  L +KM  E   P +  + +LL +C +   
Sbjct: 393 ------EPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFE---PTASMWGSLLGSCRNYNN 443

Query: 315 VDLG 318
           + L 
Sbjct: 444 IRLA 447


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 317/539 (58%), Gaps = 10/539 (1%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L +   +  A   F+++    +  +NTM+ G V+  N  +A   +  M E+  
Sbjct: 68  NLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGV 127

Query: 100 --NSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
             ++ ++  ++        +++ ++    + K+     V    ++IS Y K G++ +   
Sbjct: 128 KPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCA 187

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS 212
           +F++M  +++ +W+A+I  +       D L+LL  M   G  R   S L SVL  C+HL 
Sbjct: 188 VFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLG 247

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +L LG+ VH  + ++    +    T LI MY KCG L     LF ++ +K+ ++++ MIS
Sbjct: 248 ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMIS 307

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332
           G A HG G + LR+F +M ++G++PD I +V +L AC+HAGLV  G+Q F+ M  ++GI 
Sbjct: 308 GLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIE 367

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392
               HY CMVDL+GRAGK+ EA++LIK MP +P   ++ +LLSA +VH  L   E AA  
Sbjct: 368 PTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQ 427

Query: 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452
           LF L+   A+  YV L+N+YA  ++W+DVA+ R +M    + + PG+S +EV   +H F 
Sbjct: 428 LFKLDSQKASD-YVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 486

Query: 453 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
           S D  HP+  S++E L ++E ++K  GY PD    L  V EE K+Q L  HS+KLAIA+ 
Sbjct: 487 SQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYA 546

Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LI    G+PIR+ +NLR+C DCH  TK IS I  REI VRD  RFHHFKDG CSC DYW
Sbjct: 547 LIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 325/581 (55%), Gaps = 13/581 (2%)

Query: 3   VKTTVNWNSVLAGFAK--QRGKLK--DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +K  ++  S++A   +  + G LK   A  +   + Q   ++  ++ S  +  S  V  A
Sbjct: 1   MKPMLDQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYA 60

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKN----MAKARDLFLAMPEKNSVSWSAMISGYIEC 114
              F      +   WNT+I G+    +    +A  RD+FL     NS ++  ++    + 
Sbjct: 61  HRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKL 120

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKF----GKVDLAEKLFDEMPTKNLVTWNAMI 170
            +L +  EL        +   T +++G +K     G +D A  +FDEMP  +  +W+ M+
Sbjct: 121 LRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMV 180

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           +GY +N  A + LKL R M    +  +A +L+SV+  C  L +L LGK VH  + K  + 
Sbjct: 181 SGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVK 240

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            D    T L+ MY KCG L++A K+F  +  +DV  W+ MI+GYA HG GEKAL+LFD M
Sbjct: 241 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAM 300

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           K     P+ +TF ++L AC+H+GLV+ G Q F++M  +Y I  +  HY CMVDL  RAG 
Sbjct: 301 KRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGM 360

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           +  A   I+ MP +P   ++ TLL AC+ H   DL E  +  +  L+P++    YV ++N
Sbjct: 361 VGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPEN-YVLVSN 419

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           +YA++ +W  V ++R  MK+    K  G+S IE+  +VH+F  GD  HPE   I+  L +
Sbjct: 420 VYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQ 479

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           + +++K  G+V      LH + EE KE  L  HSE+LAIA+GL+  P G+PIR+ KNLRV
Sbjct: 480 MARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRV 539

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           C DCH   K IS +  REIIVRD  RFHHF++  CSC DYW
Sbjct: 540 CRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|357111099|ref|XP_003557352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 685

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 315/573 (54%), Gaps = 50/573 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+VL  +AK  G  +  +  F  + + D VS+NI++S  + N D ++ +   F   P++D
Sbjct: 152 NAVLDMYAKC-GDYECTKRAFKAMTKIDAVSWNIVISACMQNGD-ILGSMQLFDVSPLRD 209

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV------SWSAMISGYIECGQLDKAVE- 122
           T+SWNT+ISG ++    AKA D    M     V      S +  ++G +    L + +  
Sbjct: 210 TSSWNTVISGLMRNGCAAKALDCLYRMARARVVFNHYTYSTALALAGMLSLQDLGRQLHG 269

Query: 123 -LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMIAGYVENSW 178
            +   A        ++++  Y K G ++ A  +FD   ++       W+AM+AGYV+N  
Sbjct: 270 RVLTAAVDTDAFVRSSLMDMYCKCGSMETAVLIFDSWSQLTGDMNFAWSAMVAGYVQNGR 329

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+  +  R M+  G+  +  +L+S +  C++   ++ G+     +F             
Sbjct: 330 EEEAFEFFRSMLREGVAAHQFTLTSAIAACANAGMVEQGR-----IF------------- 371

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
                      + AC        K+V  W +M+  YA HGKG  A+ LF++M  E + P+
Sbjct: 372 -----------DRACA-------KNVALWTSMLCSYASHGKGRMAIELFNRMTAEKITPN 413

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            IT V +L AC+H  LV+ G  +F  M ++YGI    +HY CMVDL GRAG L +A + I
Sbjct: 414 EITLVGVLSACSHGRLVNEGDHFFKLMQDEYGIVPSIEHYNCMVDLYGRAGMLYKAHNFI 473

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           K+   K +  ++ TLLSACR+HK ++ A+ A+ NL  L   +A G YV L+N+YA   KW
Sbjct: 474 KENNIKHEAIVWKTLLSACRLHKHMEYAKLASENLIQLEECDA-GSYVMLSNVYATHSKW 532

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
            D +++R SM+E  V K PG SWI +  ++H F +GD  HP    I+  L++L +R+K  
Sbjct: 533 LDTSKLRSSMRERRVWKQPGRSWIHLKNIMHTFVAGDTAHPRSAEIYAYLEKLMERLKDL 592

Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
           GY    +   H V EE +E  L FHSEKLAIAFG+I  P GTP+R+FKNLRVC DCH A 
Sbjct: 593 GYTSRTDLVAHDVEEEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCVDCHEAI 652

Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KY+S    REI+VRD  RFHHFKD  CSC D+W
Sbjct: 653 KYVSQATDREIVVRDLYRFHHFKDAKCSCEDFW 685



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 164/395 (41%), Gaps = 55/395 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCIL----LNSDD 54
           ++   W + +AG A+  G+  D    F ++      +P+      +L C      + S  
Sbjct: 75  RSASAWTAFIAGCARS-GRHMDGLSAFTEMRAKGGAEPNAFVLAAVLRCCAGLRDMESGK 133

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  +   +     D    N ++  + +  +    +  F AM + ++VSW+ +IS  ++ 
Sbjct: 134 CIHGW-MLRNGAHLDVVLCNAVLDMYAKCGDYECTKRAFKAMTKIDAVSWNIVISACMQN 192

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G +  +++LF V+P++   +W  +ISG M+                              
Sbjct: 193 GDILGSMQLFDVSPLRDTSSWNTVISGLMR------------------------------ 222

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
            N  A   L  L  M    +  N  + S+ L     LS   LG+Q+H  V  + +  D  
Sbjct: 223 -NGCAAKALDCLYRMARARVVFNHYTYSTALALAGMLSLQDLGRQLHGRVLTAAVDTDAF 281

Query: 235 ALTPLISMYCKCGDLEDACKLF---LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
             + L+ MYCKCG +E A  +F    ++       W+AM++GY Q+G+ E+A   F  M 
Sbjct: 282 VRSSLMDMYCKCGSMETAVLIFDSWSQLTGDMNFAWSAMVAGYVQNGREEEAFEFFRSML 341

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            EG+     T  + + AC +AG+V+ G       + D   A     +T M+      GK 
Sbjct: 342 REGVAAHQFTLTSAIAACANAGMVEQG------RIFDRACAKNVALWTSMLCSYASHGKG 395

Query: 352 VEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRL 383
             A++L  +M      P       +LSAC  H RL
Sbjct: 396 RMAIELFNRMTAEKITPNEITLVGVLSACS-HGRL 429



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK-LLRMMIGLGIRPNASSLSSVLLGCS 209
           A KL DE P ++   W A IAG   +    DGL     M    G  PNA  L++VL  C+
Sbjct: 65  ARKLLDETPKRSASAWTAFIAGCARSGRHMDGLSAFTEMRAKGGAEPNAFVLAAVLRCCA 124

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L  ++ GK +H  + ++    D      ++ MY KCGD E   + F  + + D V+WN 
Sbjct: 125 GLRDMESGKCIHGWMLRNGAHLDVVLCNAVLDMYAKCGDYECTKRAFKAMTKIDAVSWNI 184

Query: 270 MISGYAQHGKGEKALRLFD 288
           +IS   Q+G    +++LFD
Sbjct: 185 VISACMQNGDILGSMQLFD 203


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 320/571 (56%), Gaps = 55/571 (9%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           V AA   F  +  +DT  WNTM+SG V+     +A  +F  M +     +S + +A++ G
Sbjct: 157 VAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPG 216

Query: 111 YIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
             E   L   + +     KV         T +   Y K G+++ A  LF ++   +LV++
Sbjct: 217 VAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSY 276

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           NAMI+GY  N+  E  ++L + ++  G + N+SS+  ++        L L + +H    K
Sbjct: 277 NAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTK 336

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S +  +++  T L ++Y +  ++E A  LF E   K + +WNAMISGYAQ+G  EKA+ L
Sbjct: 337 SGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISL 396

Query: 287 FDKMKDEGMKPD----------------------------------------------SI 300
           F +M+   ++P+                                               +
Sbjct: 397 FQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVSPTGV 456

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+++L AC+HAGLV  G + F SMV+D+G    P+HY CMVDLLGRAG L +A+D I+K
Sbjct: 457 TFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRK 516

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MP +P P ++G LL AC +HK  +LA  A+  LF L+P N  G YV L+NIY+A + + +
Sbjct: 517 MPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNV-GYYVLLSNIYSAGQNYPE 575

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
            A +R  +K   + K PG + IEV   +H F SGD+ HP+  +I+  L++L  +M+ AG+
Sbjct: 576 AASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGF 635

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
             +   ALH V EE KE ++  HSEKLAIAFGLI    GT IR+ KNLRVC DCH ATK+
Sbjct: 636 QTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKF 695

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I +R I+VRD  RFHHFKDG CSCGDYW
Sbjct: 696 ISKITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 28/285 (9%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           +  A  LF  IP PD+  YN+++    LN                      N+  S    
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLN----------------------NSPSSAVSL 95

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-VVAWTAMISG 141
             ++ K+  L     E ++ +++ +ISG    G          VA   S +   +A+++ 
Sbjct: 96  YTHLRKSTPL-----EPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVAC 150

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y KF +V  A K+FD M  ++ V WN M++G V+NS  ++ + +   M+  GI  +++++
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           ++VL G + L  L LG  +  L  K         +T L  +Y KCG++E A  LF +I +
Sbjct: 211 AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQ 270

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            D+V++NAMISGY  + + E ++RLF ++   G K +S + V L+
Sbjct: 271 PDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/621 (34%), Positives = 334/621 (53%), Gaps = 63/621 (10%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD------ 54
            M  +  ++WNS++A +  Q GK  D  ++  ++ Q   V  ++  +  L    +      
Sbjct: 459  MTERDLISWNSMMACYV-QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIE 517

Query: 55   --------VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
                    +VA F  F  +        N +++ + +   M +A+ +   MP+ + V+W+A
Sbjct: 518  SKIVHALIIVAGFHDFLIVG-------NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNA 570

Query: 107  MISGYIECGQLDKAVELFKV------------------------------APVKSVVAWT 136
            +I G+ E  + ++AV+ +K+                               P+ + +  T
Sbjct: 571  LIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT 630

Query: 137  ----------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                      ++I+ Y K G ++ +  +FD +  K+ +TWNAM+A    +   E+ LK+ 
Sbjct: 631  GFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIF 690

Query: 187  RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
              M  +G+  +  S S  L   ++L+ L+ G+Q+H LV K     D       + MY KC
Sbjct: 691  GEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKC 750

Query: 247  GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            G++ D  K+  +   +  ++WN +IS +A+HG  +KA   F +M   G KPD +TFV+LL
Sbjct: 751  GEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 810

Query: 307  LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             ACNH GLVD G+ Y+DSM  ++G+    +H  C++DLLGR+G+L  A   IK+MP  P 
Sbjct: 811  SACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPN 870

Query: 367  PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
               + +LL+ACR+H  L+LA   A +L  L+P++ +  YV  +N+ A   KW+DV  +R 
Sbjct: 871  DLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA-YVLYSNVCATSGKWEDVENLRK 929

Query: 427  SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
             M  NN+ K P  SW+++   VH F  G++ HP+   I  KL EL K  K AGYVPD  F
Sbjct: 930  EMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSF 989

Query: 487  ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            ALH + EE KE  L  HSE+LA+AFGLI  P  + +R+FKNLRVCGDCH   K++S I  
Sbjct: 990  ALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVG 1049

Query: 547  REIIVRDTTRFHHFKDGTCSC 567
            R+I++RD  RFHHF  G CSC
Sbjct: 1050 RKIVLRDPYRFHHFSGGKCSC 1070



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 40/268 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           NT+I+ + +  N+  AR +F  M  +N  SWS M+SGY+  G  ++AV LF         
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 192

Query: 125 -------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
                                          K   +  V   TA++  Y   G V  A+K
Sbjct: 193 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 252

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           LF+EMP  N+V+W +++ GY ++    + L + + M   G+  N ++ ++V   C  L  
Sbjct: 253 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 312

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
             LG QV   + +       +    LISM+     +E+AC +F  +   D+++WNAMIS 
Sbjct: 313 QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 372

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           YA HG   ++LR F  M+    + +S T
Sbjct: 373 YAHHGLCRESLRCFHWMRHLHNETNSTT 400



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 202/434 (46%), Gaps = 45/434 (10%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           V  A   F+ +P  +  SW +++ G+    N  +  +++  M ++    N  +++ + S 
Sbjct: 247 VYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS- 305

Query: 111 YIECGQLDKAVELFKV-------APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
              CG L+  V  ++V           SV    ++IS +  F  V+ A  +FD M   ++
Sbjct: 306 --SCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDI 363

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           ++WNAMI+ Y  +    + L+    M  L    N+++LSS+L  CS + +L+ G+ +H L
Sbjct: 364 ISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGL 423

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K  L  +      L+++Y + G  EDA  +F  +  +D+++WN+M++ Y Q GK    
Sbjct: 424 VVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDG 483

Query: 284 LRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQYFDSMV---NDYGIAAKPDHYT 339
           L++  ++   G   + +TF + L AC N   L++  I +   +V   +D+ I        
Sbjct: 484 LKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNA---- 539

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-- 397
            +V + G+ G ++EA  +++ MP +P    +  L+     ++  + A   A  L      
Sbjct: 540 -LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEA-VKAYKLIREKGI 596

Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
           PAN    Y+ + ++  A    DD+ +            MP    I    V+  F S D V
Sbjct: 597 PAN----YITMVSVLGACSAPDDLLK----------HGMP----IHAHIVLTGFESDDYV 638

Query: 458 HPELVSIHEKLKEL 471
              L++++ K  +L
Sbjct: 639 KNSLITMYAKCGDL 652



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             +I+ Y KFG ++ A  +FDEM  +N  +W+ M++GYV     E+ + L   M GLG+ 
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 192

Query: 196 PNASSLSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           PN   ++S++  CS    +   G QVH  V K+ +  D    T L+  Y   G + +A K
Sbjct: 193 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 252

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF E+   +VV+W +++ GY+  G   + L ++ +M+ EG+  +  TF  +  +C   GL
Sbjct: 253 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GL 309

Query: 315 VD---LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           ++   LG Q    ++  YG          ++ +      + EA  +   M
Sbjct: 310 LEDQVLGYQVLGHII-QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 358



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 8/282 (2%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D VS    L  +  +   V  A   F  +   D  SWN MIS +       ++   F  M
Sbjct: 330 DSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM 389

Query: 97  ----PEKNSVSWSAMISGYIECGQL--DKAVE--LFKVAPVKSVVAWTAMISGYMKFGKV 148
                E NS + S+++S       L   + +   + K+    +V     +++ Y + G+ 
Sbjct: 390 RHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRS 449

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           + AE +F  M  ++L++WN+M+A YV++    DGLK+L  ++ +G   N  + +S L  C
Sbjct: 450 EDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAAC 509

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           S+   L   K VH L+  +           L++MY K G + +A K+   + + D VTWN
Sbjct: 510 SNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWN 569

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           A+I G+A++ +  +A++ +  ++++G+  + IT V++L AC+
Sbjct: 570 ALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 346/617 (56%), Gaps = 48/617 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAA 58
           M V+ +V +N+++ G+ K     +  +   + + Q  PD+++   +L C   +  D+  A
Sbjct: 268 MVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVL-CACGHLRDLSLA 326

Query: 59  ---FDFFQRLP-IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
              +++  R   + ++   N +I  + +  +M  ARD+F +M  K++VSW+++ISGYI+ 
Sbjct: 327 KYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQS 386

Query: 115 GQLDKAVELFKVA----------------------------------PVKSVV-----AW 135
           G L +A++LFK+                                    +KS +       
Sbjct: 387 GDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVS 446

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A+I  Y K G+V  + K+F+ M T + VTWN +I+  V       GL++   M    + 
Sbjct: 447 NALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVV 506

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+ ++    L  C+ L++ +LGK++H  + +     +      LI MY KCG LE + ++
Sbjct: 507 PDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRV 566

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  + R+DVVTW  MI  Y  +G+GEKAL  F  M+  G+ PDS+ F+AL+ AC+H+GLV
Sbjct: 567 FERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLV 626

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G+  F+ M   Y I    +HY C+VDLL R+ K+ +A + I+ MP +P  +I+ ++L 
Sbjct: 627 EKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLR 686

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR    ++ AE  +  +  LNP +  G  +  +N YAA++KWD V+ IR S+++ ++ K
Sbjct: 687 ACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKK 745

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHAVGEE 494
            PGYSWIE+G  VH F SGD   P+  +IH+ L+ L   M   GY+PD  E + +   EE
Sbjct: 746 NPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEE 805

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            K +L+  HSE+LAIAFGL+    GTP++V KNLRVC DCH  TK IS I  REI+VRD 
Sbjct: 806 EKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDA 865

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFH FKDG CSC D W
Sbjct: 866 NRFHLFKDGICSCKDRW 882



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 177/386 (45%), Gaps = 45/386 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ +   + L     + G L  A+++FD++P  D+V                     
Sbjct: 135 MGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLV--------------------- 173

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGY----- 111
                      SWN++ISG+       +A +++  +       +S + S+++  +     
Sbjct: 174 -----------SWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLV 222

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           ++ GQ      L       SVV    +++ Y+KF +   A ++FDEM  ++ VT+N MI 
Sbjct: 223 VKQGQGLHGFTLKSGVNSVSVVN-NGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMIC 281

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY++    E+ +K+    +    +P+  +++SVL  C HL  L L K ++  + ++    
Sbjct: 282 GYLKLEMVEESVKMFLENLD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVL 340

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           ++T    LI +Y KCGD+  A  +F  ++ KD V+WN++ISGY Q G   +A++LF  M 
Sbjct: 341 ESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMM 400

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
               + D IT++ L+        +  G     + +   GI         ++D+  + G++
Sbjct: 401 IMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKS-GIYIDLSVSNALIDMYAKCGEV 459

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSAC 377
            +++ +   M        + T++SAC
Sbjct: 460 GDSLKIFNSMG-TLDTVTWNTVISAC 484



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 161/320 (50%), Gaps = 17/320 (5%)

Query: 57  AAFDFFQRL-PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGY 111
           ++   F+R+ P K+   WN++I  F +     KA + +  + E     +  ++ ++I   
Sbjct: 57  SSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKA- 115

Query: 112 IECGQLDKAV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
             C  L  A        ++ ++     +    A++  Y + G +  A ++FDEMP ++LV
Sbjct: 116 --CAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLV 173

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WN++I+GY  + + E+ L++   +    I P++ ++SSVL   ++L  ++ G+ +H   
Sbjct: 174 SWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFT 233

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            KS +   +     L++MY K     DA ++F E+  +D VT+N MI GY +    E+++
Sbjct: 234 LKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESV 293

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           ++F +  D+  KPD +T  ++L AC H   + L    ++ M+   G   +      ++D+
Sbjct: 294 KMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRA-GFVLESTVKNILIDV 351

Query: 345 LGRAGKLVEAVDLIKKMPFK 364
             + G ++ A D+   M  K
Sbjct: 352 YAKCGDMITARDVFNSMECK 371


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 307/527 (58%), Gaps = 10/527 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  AF  F  +P  D   W+ MI+ F Q     +A DLF+ M E     N  + S++++
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILN 356

Query: 110 GYI--ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           G    +C  L + +   + KV     +    A+I  Y K  K+D A KLF E+ +KN V+
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS 416

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN +I GY           + R  +   +     + SS L  C+ L+S+ LG QVH L  
Sbjct: 417 WNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAI 476

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           K+   K       LI MY KCGD++ A  +F E++  DV +WNA+ISGY+ HG G +ALR
Sbjct: 477 KTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALR 536

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           + D MKD   KP+ +TF+ +L  C++AGL+D G + F+SM+ D+GI    +HYTCMV LL
Sbjct: 537 ILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLL 596

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GR+G+L +A+ LI+ +P++P   I+  +LSA       + A  +A  +  +NP + A  Y
Sbjct: 597 GRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEA-TY 655

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V ++N+YA  K+W +VA IR SMKE  V K PG SWIE    VH F  G   HP++  I+
Sbjct: 656 VLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLIN 715

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRV 524
             L+ L  +   AGYVPD    L  + +E K++ L  HSE+LA+A+GL+++P     I +
Sbjct: 716 GMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILI 775

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR+C DCH A K IS+I +R++++RD  RFHHF  G CSCGD+W
Sbjct: 776 MKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 25/338 (7%)

Query: 42  NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           N  +   L+N+  V  + D     F+ +  KD   W  ++S +V+      +  L   M 
Sbjct: 180 NAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMR 239

Query: 98  EK----NSVSWSAMISGYIECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVD 149
                 N+ ++   +   I  G  D A     ++ K   V        ++  Y + G + 
Sbjct: 240 MAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMS 299

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A K+F+EMP  ++V W+ MIA + +N +  + + L   M    + PN  +LSS+L GC+
Sbjct: 300 DAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
                 LG+Q+H LV K     D      LI +Y KC  ++ A KLF E+  K+ V+WN 
Sbjct: 360 IGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNT 419

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           +I GY   G+G KA  +F +     +    +TF + L AC     +DLG+Q        +
Sbjct: 420 VIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQV-------H 472

Query: 330 GIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKM 361
           G+A K ++         ++D+  + G +  A  +  +M
Sbjct: 473 GLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM 510



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 32/269 (11%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           + N+   +A+I+ Y  CG +D A  +F+    K +V W  ++S                 
Sbjct: 178 DSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVS----------------- 220

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
                          YVEN + ED LKLL  M   G  PN  +  + L     L +    
Sbjct: 221 --------------CYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFA 266

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K VH  + K+    D      L+ +Y + GD+ DA K+F E+ + DVV W+ MI+ + Q+
Sbjct: 267 KGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G   +A+ LF +M++  + P+  T  ++L  C       LG Q    +V   G       
Sbjct: 327 GFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQ-LHGLVVKVGFDLDIYV 385

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
              ++D+  +  K+  AV L  ++  K +
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNE 414



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 17/247 (6%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ K      + A   +++ Y+K G    A  LFDEMP +N V++  +  GY      +D
Sbjct: 74  DILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQD 129

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            + L   +   G   N    +S L     L   ++   +H  + K     +      LI+
Sbjct: 130 PIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALIN 189

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y  CG ++ A  +F  I  KD+V W  ++S Y ++G  E +L+L   M+  G  P++ T
Sbjct: 190 AYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYT 249

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK------PDHYTCMVDLLGRAGKLVEAV 355
           F   L A        +G+  FD     +G   K      P     ++ L  + G + +A 
Sbjct: 250 FDTALKA-------SIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAF 302

Query: 356 DLIKKMP 362
            +  +MP
Sbjct: 303 KVFNEMP 309



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 111/295 (37%), Gaps = 74/295 (25%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDV 55
           ++ K  V+WN+V+ G+ +  G+   A  +F     +++   +V   + + +C  L S D+
Sbjct: 409 LSSKNEVSWNTVIVGY-ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDL 467

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                                + G   K N AK          K +VS +++I  Y +CG
Sbjct: 468 ------------------GVQVHGLAIKTNNAK----------KVAVS-NSLIDMYAKCG 498

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
            +  A  +F       V +W A+ISGY   G                             
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHG----------------------------- 529

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCK 231
                  L++L +M     +PN  +   VL GCS+   +  G++  + + +     P  +
Sbjct: 530 --LGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLE 587

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
             T +  L+    + G L+ A KL   I  +  V+ W AM+S        E A R
Sbjct: 588 HYTCMVRLLG---RSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARR 639


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/469 (39%), Positives = 293/469 (62%), Gaps = 3/469 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +++I  Y+ CG +  A ++F     K V++WT+++  Y + G +  AE++F   P K++V
Sbjct: 181 NSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMV 240

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            W AM+ GY +N+     L++   M  LG+  +  SL+  +  C+ L +L+    V ++ 
Sbjct: 241 AWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIA 300

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            ++    +    + L+ MY KCG +++A K+F  +Q K+V T+++MI+G A HG+  +A+
Sbjct: 301 ERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAI 360

Query: 285 RLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
            LF +M +   ++P+ +TF+ +L AC+HAG+V  G  YF  M + YGI    DHY CMVD
Sbjct: 361 ALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVD 420

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAG + EA+DL++ M   P   ++G LL ACR+H + ++A+  A +LF L P  + G
Sbjct: 421 LLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEP-ESIG 479

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-VGTVVHEFRSGDRVHPELV 462
            YV L+NI A+  KW++V+++R+ M++  + K P  S  E    +VH+F +GD  HP   
Sbjct: 480 NYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTH 539

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I + L EL  ++KL GYVP L   ++ V +E KE+LL+ HSEKLA++FGL+ +  G  I
Sbjct: 540 EIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTI 599

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+ KNLR+C DCH   + +S +E  EIIVRD  RFHHFK+G CSCG +W
Sbjct: 600 RIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 27/314 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  +    G +  A+++FD++ + DV+S+  ++      S D+ +A + F R P+KD
Sbjct: 181 NSLIGAYVAC-GDVGAARKVFDEMVEKDVISWTSIV-VAYTRSGDMRSAEEVFGRCPVKD 238

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFK 125
             +W  M++G+ Q     KA ++F  M E     + VS +  IS   + G L +A  + +
Sbjct: 239 MVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQE 298

Query: 126 VAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           +A       +VV  + ++  Y K G +D A K+F  M  KN+ T+++MIAG   +  A +
Sbjct: 299 IAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASE 358

Query: 182 GLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            + L + M+    + PN  +   VL  CSH   +  G+      +     KD   + P  
Sbjct: 359 AIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGR------YYFAQMKDKYGIMPSA 412

Query: 241 SMYCKCGDLEDACKLF---LEIQRKDVVT-----WNAMISGYAQHGKGEKALRLFDKMKD 292
             Y    DL     L    L++ R   VT     W A++     HGK E A  + + +  
Sbjct: 413 DHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFK 472

Query: 293 EGMKPDSITFVALL 306
             ++P+SI    LL
Sbjct: 473 --LEPESIGNYVLL 484


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/474 (42%), Positives = 286/474 (60%), Gaps = 2/474 (0%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           + V  S+++  Y +CG L+ A  +F    VK+ ++WTAM+SGY K G+ + A +LF  +P
Sbjct: 139 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 198

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGK 218
            KNL +W A+I+G+V++    +   +   M    +   +   LSS++  C++L++   G+
Sbjct: 199 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 258

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
           QVH LV              LI MY KC D+  A  +F  ++ +DVV+W ++I G AQHG
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
           + EKAL L+D M   G+KP+ +TFV L+ AC+H G V+ G + F SM  DYGI     HY
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
           TC++DLLGR+G L EA +LI  MPF P    +  LLSAC+   R  +    A +L +   
Sbjct: 379 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 438

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
                 Y+ L+NIYA+   W  V+  R  + E  V K PG+S +EV      F +G+  H
Sbjct: 439 LKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSH 498

Query: 459 PELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           P    I   LK+LE+ M++  GYVPD  + LH + E+ KE+LL +HSE+ A+A+GL+K  
Sbjct: 499 PLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAV 558

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            GTPIR+ KNLRVCGDCH   K+IS I +REIIVRD TR+HHFK G CSC D+W
Sbjct: 559 PGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 47/301 (15%)

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
           C LLNS   V     F  + +K+T SW  M+SG+ +     +A +LF  +P KN  SW+A
Sbjct: 153 CGLLNSAKAV-----FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTA 207

Query: 107 MISGYIECGQLDKAVELFK---------VAPV---------------------------- 129
           +ISG+++ G+  +A  +F          + P+                            
Sbjct: 208 LISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIAL 267

Query: 130 ---KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
                V    A+I  Y K   V  A+ +F  M  +++V+W ++I G  ++  AE  L L 
Sbjct: 268 GFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALY 327

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCK 245
             M+  G++PN  +   ++  CSH+  ++ G+++ Q + K    + +    T L+ +  +
Sbjct: 328 DDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGR 387

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
            G L++A  L   +    D  TW A++S   + G+G+  +R+ D +       D  T++ 
Sbjct: 388 SGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYIL 447

Query: 305 L 305
           L
Sbjct: 448 L 448



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
            + K+  V+       +++ Y K G    A ++FDEMP ++ + W +++    + + +  
Sbjct: 28  HIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGK 87

Query: 182 GLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            L +   +     +RP+    S+++  C++L S+  G+QVH     S    D    + L+
Sbjct: 88  TLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLV 147

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            MY KCG L  A  +F  I+ K+ ++W AM+SGYA+ G+ E+AL LF
Sbjct: 148 DMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 151/369 (40%), Gaps = 79/369 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK T++W ++++G+AK  G+ ++A ELF  +P  ++ S+  ++S   + S   + AF 
Sbjct: 166 IRVKNTISWTAMVSGYAKS-GRKEEALELFRILPVKNLYSWTALISG-FVQSGKGLEAFS 223

Query: 61  FF-----QRLPIKD--------------TASW---------------------NTMISGF 80
            F     +R+ I D               AS                      N +I  +
Sbjct: 224 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMY 283

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWT 136
            +  ++  A+D+F  M  ++ VSW+++I G  + GQ +KA+ L+       V    V + 
Sbjct: 284 AKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFV 343

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTK-----NLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            +I      G V+   +LF  M        +L  +  ++     +   ++   L+  M  
Sbjct: 344 GLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM-- 401

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC------- 244
               P+  + +++L  C      Q+G ++   +  S   KD +    L ++Y        
Sbjct: 402 -PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 460

Query: 245 ------KCGDLE---DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-- 293
                 K G++E   D     +E++++  V +    +G   H   E   RL  K+++E  
Sbjct: 461 VSEARRKLGEMEVRKDPGHSSVEVRKETEVFY----AGETSHPLKEDIFRLLKKLEEEMR 516

Query: 294 ---GMKPDS 299
              G  PD+
Sbjct: 517 IRNGYVPDT 525



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+   +L   K +H  + K  + +       L+++Y KCG    A ++F E+  +D + W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 268 NAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSM 325
            ++++   Q     K L          G++PD   F AL+ AC + G +D G Q +   +
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           V++Y  A      + +VD+  + G L  A
Sbjct: 133 VSEY--ANDEVVKSSLVDMYAKCGLLNSA 159


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/470 (39%), Positives = 291/470 (61%), Gaps = 4/470 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           +A+I  Y++CG L  A  +F   P + V++WT +I  Y + G +  A  LFD +P K++V
Sbjct: 149 NAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMV 208

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TW AM+ GY +N+   D L++ R +   G+  +  +L  V+  C+ L + +    +  + 
Sbjct: 209 TWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIA 268

Query: 225 FKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
             S        L  + LI MY KCG++E+A  +F  ++ ++V ++++MI G+A HG+   
Sbjct: 269 ESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARA 328

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A++LF  M + G+KP+ +TFV +L AC+HAGLVD G Q F SM   YG+A   + Y CM 
Sbjct: 329 AIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMT 388

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DLL RAG L +A+ L++ MP +   A++G LL A  VH   D+AE A+  LF L P N  
Sbjct: 389 DLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDN-I 447

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV-GTVVHEFRSGDRVHPEL 461
           G Y+ L+N YA+  +WDDV+++R  ++E N+ K PG+SW+E    ++H+F +GD  HP++
Sbjct: 448 GNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKI 507

Query: 462 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             I ++L +L +R+K  GY P+L    + + +  K  LL+ HSEKLA+AFGL+   +G+ 
Sbjct: 508 NEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGST 567

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I++ KNLR+C DCH      S +  R+I+VRD TRFHHF +G CSC ++W
Sbjct: 568 IKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 30/316 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+V+  + K  G L+ A+ +FD++P+ DV+S+  ++        D+ AA D F  LP+KD
Sbjct: 149 NAVIDMYVKC-GSLRCARMVFDEMPERDVISWTGLI-VAYTRIGDMRAARDLFDGLPVKD 206

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFK 125
             +W  M++G+ Q      A ++F  +     E + V+   +IS   + G    A  +  
Sbjct: 207 MVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRD 266

Query: 126 VAPVK------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           +A         +V+  +A+I  Y K G V+ A  +F  M  +N+ ++++MI G+  +  A
Sbjct: 267 IAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRA 326

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTA 235
              +KL   M+  G++PN  +   VL  CSH   +  G+Q+   + K    +P  +    
Sbjct: 327 RAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYAC 386

Query: 236 LTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA----LRLFDKM 290
           +T L+S   + G LE A +L   +    D   W A++     HG  + A     RLF+  
Sbjct: 387 MTDLLS---RAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE-- 441

Query: 291 KDEGMKPDSITFVALL 306
               ++PD+I    LL
Sbjct: 442 ----LEPDNIGNYLLL 453



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 22/251 (8%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIA--GYVEN 176
           LF      +  AWTA+I  Y   G +  A   +  M  + +     T++A+ +    V +
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
           S     L    +++G G   +    ++V+       SL+  +    +VF     +D  + 
Sbjct: 125 SALGAQLHAQTLLLG-GFSSDLYVNNAVIDMYVKCGSLRCAR----MVFDEMPERDVISW 179

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           T LI  Y + GD+  A  LF  +  KD+VTW AM++GYAQ+     AL +F +++DEG++
Sbjct: 180 TGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVE 239

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVND------YGIAAKPDHYTCMVDLLGRAGK 350
            D +T V ++ AC       LG   + + + D      +G+       + ++D+  + G 
Sbjct: 240 IDEVTLVGVISAC-----AQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGN 294

Query: 351 LVEAVDLIKKM 361
           + EA D+ K M
Sbjct: 295 VEEAYDVFKGM 305



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 8/205 (3%)

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---LFLEIQRKDVVTWN 268
           SSL   K+VH  ++   L + +  LT L+ +      +        LF ++   +   W 
Sbjct: 19  SSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWT 78

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           A+I  YA  G   +AL  +  M+   + P S TF AL  AC       LG Q     +  
Sbjct: 79  ALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLL 138

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
            G ++       ++D+  + G L  A  +  +MP +   +  G +++  R+    D+   
Sbjct: 139 GGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG---DMR-- 193

Query: 389 AAMNLFNLNPANAAGCYVQLANIYA 413
           AA +LF+  P      +  +   YA
Sbjct: 194 AARDLFDGLPVKDMVTWTAMVTGYA 218


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/614 (36%), Positives = 334/614 (54%), Gaps = 44/614 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK---IPQPDVVSYNIML------------ 45
           M  +  V+WN+++AG      +L+  Q   D    + +    +Y+ ++            
Sbjct: 262 METRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA 321

Query: 46  ----SCIL---LNSDDVVA---------------AFDFFQRLP-IKDTASWNTMISGFVQ 82
               SC+L    +SD  V                AF+ F  +P  ++  SW  MI G +Q
Sbjct: 322 RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQ 381

Query: 83  KKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
             ++  A  LF  M E N      ++S +++  I         ++ K     +    TA+
Sbjct: 382 NADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTAL 441

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ++ Y K G  + A  +F  +  K++V W+AM++ Y +    +    +   M   G++PN 
Sbjct: 442 LASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNE 501

Query: 199 SSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
            ++SS +  C S  + +  G+Q H +  K          + L++MY + G ++ A  +F 
Sbjct: 502 FTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFE 561

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
               +D+V+WN+MISGYAQHG  ++AL  F +M+  G++ D  TF+A+++ C HAGLV  
Sbjct: 562 RQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKE 621

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G QYFDSMV D+ I+   +HY+CMVDL  RAGKL E ++LI+ MPF     ++ TLL AC
Sbjct: 622 GQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGAC 681

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           RVHK ++L + AA  L  L P ++A  YV L+NIYAA  +W +   +R  M    V K  
Sbjct: 682 RVHKNVELGKLAAQKLLLLEPDDSA-TYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEA 740

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G SWI++   VH F + D+ HP    I+ KLK +  R+K  GY P+    LH + EE KE
Sbjct: 741 GCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKE 800

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
            +L+ HSE+LA+AFGLI  P  TP+++ KNLRVCGDCH   K +S IE REII+RD +RF
Sbjct: 801 TMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRF 860

Query: 558 HHFKDGTCSCGDYW 571
           HHF  G CSCGD+W
Sbjct: 861 HHFNAGACSCGDFW 874



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 137/256 (53%), Gaps = 9/256 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F+ +P ++  +W ++++G+VQ +  +    LF  M  +    N  ++++++S     G +
Sbjct: 158 FEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAV 217

Query: 118 DKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           D       +  K     +V    ++I+ Y K G V+ A+ +F +M T+++V+WN ++AG 
Sbjct: 218 DLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGL 277

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           + N    + L+L         + + S+ S+V+  C++L  L L +Q+H  V K     D 
Sbjct: 278 LLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDG 337

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             +T ++  Y KCG+L+DA  +FL +   ++VV+W AMI G  Q+     A  LF +M++
Sbjct: 338 NVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMRE 397

Query: 293 EGMKPDSITFVALLLA 308
           + +KP+  T+  +L A
Sbjct: 398 DNVKPNEFTYSTVLTA 413



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 134/266 (50%), Gaps = 5/266 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           TA++  YMK G V+    +F+ MP +N+VTW +++ GYV+     D + L   M   G+ 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT-ALTPLISMYCKCGDLEDACK 254
           PN  + +SVL   +   ++ LG++VH    K   C+ T      LI+MY KCG +E+A  
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFG-CRSTVFVCNSLINMYSKCGLVEEAKA 257

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F +++ +D+V+WN +++G   +    +AL+LF   +    K    T+  ++  C +   
Sbjct: 258 VFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQ 317

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           + L  Q   S V  +G  +  +  T ++D   + G+L +A ++   MP       +  ++
Sbjct: 318 LALARQ-LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMI 376

Query: 375 SACRVHKRLDLAE--FAAMNLFNLNP 398
             C  +  + LA   F+ M   N+ P
Sbjct: 377 GGCIQNADIPLAAALFSRMREDNVKP 402


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/537 (39%), Positives = 316/537 (58%), Gaps = 33/537 (6%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMIS---- 109
           A   F ++P ++  SWN MI+G   + N  K+  LF  M  +  V    ++++ +     
Sbjct: 159 AEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGA 218

Query: 110 -GYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
            G I  G    A  + +  P+  ++++A +A++  Y K G +  A+K+FD +  KNL++W
Sbjct: 219 LGAIRGGTQIHASLITRGFPISIRNIIA-SAIVDLYAKCGYLFEAQKVFDRIEQKNLISW 277

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS----SVLLGC-SHLSSLQLGKQVH 221
           +A+I G+ +     + + L R +     R + S++     S+++G  + L+ ++ GKQ+H
Sbjct: 278 SALIQGFAQEGNLLEAMDLFRQL-----RESVSNVDGFVLSIMMGVFADLALVEQGKQMH 332

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             + K P   D +    +I MY KCG  E+A +LF E+Q ++VV+W  MI+GY +HG GE
Sbjct: 333 CYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGE 392

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           KA+ LF++M+ +G++ D + ++ALL AC+H+GL+    +YF  + N++ +    +HY CM
Sbjct: 393 KAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACM 452

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL---NP 398
           VD+LGRAG+L EA +LI+ M  KP   I+ TLLSACRVH  L++       LF +   NP
Sbjct: 453 VDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNP 512

Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
            N    YV ++NIYA    W +  R+R  +K   + K  G SW+E+   +H F  GD  H
Sbjct: 513 VN----YVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTH 568

Query: 459 PELVSIHEKLKELEKRMK-LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
           P    IHE LKE+E+R+K   GY   L FALH V EE KE+ L  HSEKLAI   L+   
Sbjct: 569 PLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDG 628

Query: 518 L---GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +   G  IRVFKNLRVCGDCH   K +S I K+  +VRD  RFH F+DG CSCGDYW
Sbjct: 629 MEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 1/228 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K  +VDLA  +FD M  +N+V+W A++ GY++   A+  L LL  M   G++PN
Sbjct: 45  LIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPN 104

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + S+ L  C  L  ++ G Q+H +  KS     +      I MY KCG +  A ++F 
Sbjct: 105 EFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFN 164

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++  +++V+WNAMI+G+   G G K+L LF +M+ +G  PD  TF + L AC   G +  
Sbjct: 165 KMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRG 224

Query: 318 GIQYFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           G Q   S++   + I+ +    + +VDL  + G L EA  +  ++  K
Sbjct: 225 GTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK 272



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 156/313 (49%), Gaps = 22/313 (7%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----------DFFQRLPIKDTASWNTMIS 78
           LFD+  Q    + N+     L+ ++D++  +            F R+  ++  SW  ++ 
Sbjct: 19  LFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMC 78

Query: 79  GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           G++Q+ N   +  L   M     + N  ++S  +      G ++  +++  +  VKS   
Sbjct: 79  GYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMC-VKSGFE 137

Query: 135 W-----TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           W      A I  Y K G++ +AE++F++MP +NLV+WNAMIAG+         L L + M
Sbjct: 138 WVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRM 197

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKS-PLCKDTTALTPLISMYCKCG 247
            G G  P+  + +S L  C  L +++ G Q+H  L+ +  P+       + ++ +Y KCG
Sbjct: 198 QGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCG 257

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            L +A K+F  I++K++++W+A+I G+AQ G   +A+ LF ++++     D      ++ 
Sbjct: 258 YLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMG 317

Query: 308 ACNHAGLVDLGIQ 320
                 LV+ G Q
Sbjct: 318 VFADLALVEQGKQ 330



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 1/164 (0%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           L+ +L  CS       G QVH          D      LI MY KC  ++ AC +F  + 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            ++VV+W A++ GY Q G  + +L L  +M   G+KP+  TF   L AC   G+V+ G+Q
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               M    G           +D+  + G++  A  +  KMPF+
Sbjct: 127 -IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR 169



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 154/365 (42%), Gaps = 100/365 (27%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L +AQ++FD+I Q +++S++ ++        +++ A D F++L  +++ S    + GF
Sbjct: 257 GYLFEAQKVFDRIEQKNLISWSALIQG-FAQEGNLLEAMDLFRQL--RESVS---NVDGF 310

Query: 81  VQKKNMAKARDL------------FLAMPEKNSVS-WSAMISGYIECGQLDKAVELFKVA 127
           V    M    DL             L +P    +S  +++I  Y++CG  ++A  LF   
Sbjct: 311 VLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEM 370

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            V++VV+WT MI+GY K G  + A  LF+ M                      DG++L  
Sbjct: 371 QVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQL--------------------DGIEL-- 408

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
                    +  +  ++L  CSH   ++  ++     + S LC +   + P I  Y    
Sbjct: 409 ---------DEVAYLALLSACSHSGLIRESQE-----YFSRLC-NNHQMKPNIEHY---- 449

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
               AC                M+    + G+ ++A  L + MK   +KP+   +  LL 
Sbjct: 450 ----AC----------------MVDILGRAGQLKEAKNLIENMK---LKPNEGIWQTLLS 486

Query: 308 ACNHAGLVDLGIQYFD---SMVNDYGIAAKPDHYTCMVDLLGRAG---------KLVEAV 355
           AC   G +++G +  +    M  D      P +Y  M ++   AG         KLV+A 
Sbjct: 487 ACRVHGNLEIGREVGEILFRMDTD-----NPVNYVMMSNIYAEAGYWKECERVRKLVKAK 541

Query: 356 DLIKK 360
            L K+
Sbjct: 542 GLKKE 546



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 115/236 (48%), Gaps = 14/236 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD--- 60
           K  ++W++++ GFA Q G L +A +LF ++ +        +LS ++    D+        
Sbjct: 272 KNLISWSALIQGFA-QEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQ 330

Query: 61  ---FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              +  ++P   D +  N++I  +++     +A  LF  M  +N VSW+ MI+GY + G 
Sbjct: 331 MHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGL 390

Query: 117 LDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            +KA+ LF    +  +    VA+ A++S     G +  +++ F  +   + +  N     
Sbjct: 391 GEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYA 450

Query: 173 YVENSWAEDG-LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            + +     G LK  + +I  + ++PN     ++L  C    +L++G++V +++F+
Sbjct: 451 CMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFR 506


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/471 (39%), Positives = 291/471 (61%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + MI  Y++C  +D A ++F   P + V++WT +I+ Y + G ++ A +LF+ +PTK++V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            W AM+ G+ +N+  ++ L+    M   GIR +  +++  +  C+ L + +   +  Q+ 
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307

Query: 225 FKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            KS        +  + LI MY KCG++E+A  +F+ +  K+V T+++MI G A HG+ ++
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367

Query: 283 ALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           AL LF  M  +  +KP+++TFV  L+AC+H+GLVD G Q FDSM   +G+    DHYTCM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           VDLLGR G+L EA++LIK M  +P   ++G LL ACR+H   ++AE AA +LF L P + 
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP-DI 486

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-IEVGTVVHEFRSGDRVHPE 460
            G Y+ L+N+YA+   W  V R+R  +KE  + K P  SW ++    +H+F  G+  HP 
Sbjct: 487 IGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPM 546

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I +KL+EL +R+ + GY PDL    + V +  K  +L+ H+EKLA+AF L+     +
Sbjct: 547 SNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDS 606

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I + KNLR+C DCH+  +  S +  + II+RD  RFHHF+ G CSCGD+W
Sbjct: 607 TITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 52/305 (17%)

Query: 105 SAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFG-KVD-LAEKLFDEM 158
           S++IS   +C  L++  ++     +    +S    T +I    K G  +D  A ++ + +
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
             +N   W A+I GY      ++ + +   M    I P + + S++L  C  +  L LG+
Sbjct: 110 QFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGR 169

Query: 219 QVHQLVFK-SPLC------------------------------KDTTALTPLISMYCKCG 247
           Q H   F+    C                              +D  + T LI+ Y + G
Sbjct: 170 QFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVG 229

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
           ++E A +LF  +  KD+V W AM++G+AQ+ K ++AL  FD+M+  G++ D +T    + 
Sbjct: 230 NMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 289

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHY---TCMVDLLGRAGKLVEAVDLIK 359
           AC   G      +Y D  V    IA K      DH    + ++D+  + G + EAV++  
Sbjct: 290 ACAQLG----ASKYADRAVQ---IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFM 342

Query: 360 KMPFK 364
            M  K
Sbjct: 343 SMNNK 347


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 309/542 (57%), Gaps = 36/542 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL----------AMPEKNSVS 103
           DV  AF  F  +    +  WNT+I       ++++  + F+          + P+K++  
Sbjct: 79  DVNYAFRVFDSIENHSSFMWNTLIRACAH--DVSRKEEAFMLYRKMLERGESAPDKHTFP 136

Query: 104 WSAMISGYIECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +      YI      K V  ++ K      V     +I  Y   G +DLA K+FDEMP +
Sbjct: 137 FVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPER 196

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           +LV+WN+MI   V     +  L+L R M      P+  ++ SVL  C+ L SL LG   H
Sbjct: 197 SLVSWNSMIDALVRVGEYDSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSLGTWSH 255

Query: 222 QLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
             + ++    +  D      LI MYCKCG L  A ++F  +++ D+ +WNAMI G+A HG
Sbjct: 256 VFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHG 315

Query: 279 KGEKALRLFDKMKDEG--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           K E+A+  FD M  EG  +KP+S+TFVALL+ACNH G+V+ G QYFD MV +YGI    +
Sbjct: 316 KAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALE 375

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC-RVHKRLDLAEFAAMNLFN 395
           HY C++DLL RAG + EA+D++  MP KP   I+ +LL AC +    ++L+E  A N+  
Sbjct: 376 HYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIG 435

Query: 396 L------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
                  + +N +G YV L+ +YA+  +W+DV  +R  M ++ + K PG S IE+  + +
Sbjct: 436 TMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISN 495

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           EF +GD  HP+   I+++LK ++ R++           + A  +  KE  L  HSE+LAI
Sbjct: 496 EFFAGDTSHPQTKQIYQQLKVIDDRLR---------SIVDATNDSSKEYSLRLHSERLAI 546

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AFGLI +P  TPIR+FKNLRVC DCH  TK IS +   EIIVRD  RFHHFKDG+CSC D
Sbjct: 547 AFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLD 606

Query: 570 YW 571
           YW
Sbjct: 607 YW 608



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 3/176 (1%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMMIGLG-IRPNASSLS 202
           F  V+ A ++FD +   +   WN +I     + S  E+   L R M+  G   P+  +  
Sbjct: 77  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFP 136

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            VL  C+++  L  GKQVH  + K     D      LI  Y  CG L+ A K+F E+  +
Sbjct: 137 FVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPER 196

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            +V+WN+MI    + G+ + AL+LF  M+ +  +PD  T  ++L AC   G + LG
Sbjct: 197 SLVSWNSMIDALVRVGEYDSALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGSLSLG 251



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 147/351 (41%), Gaps = 62/351 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+ L  F    G L  A+++FD++P+  +V                              
Sbjct: 170 NNGLIHFYGSCGCLDLARKVFDEMPERSLV------------------------------ 199

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLD----KAVE 122
             SWN+MI   V+      A  LF  M    E +  +  +++S     G L       V 
Sbjct: 200 --SWNSMIDALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVF 257

Query: 123 LFKVAPVK---SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           L +   V     V+   ++I  Y K G + +AE++F  M   +L +WNAMI G+  +  A
Sbjct: 258 LLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKA 317

Query: 180 EDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDT 233
           E+ +     M+  G  ++PN+ +  ++L+ C+H   +  G+Q   ++ +     P  +  
Sbjct: 318 EEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHY 377

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKG-----EKALRLF 287
             +  L++   + G + +A  + + +  K D V W +++    + G       E A  + 
Sbjct: 378 GCIIDLLA---RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 434

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGL---VDLGIQYFDSMVNDYGIAAKP 335
             M+D      + +   +LL+  +A      D+GI     +++D+GI  +P
Sbjct: 435 GTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGI--VRKLMSDHGIRKEP 483


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/601 (35%), Positives = 331/601 (55%), Gaps = 57/601 (9%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            NS+L  + K +   + A+ LF+ + + DVVS+NIM+    L + DV  + D F+RLP KD
Sbjct: 429  NSILDLYLKCK-VFEYAERLFELMNEGDVVSWNIMIGA-YLRAGDVEKSLDMFRRLPYKD 486

Query: 70   TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWS-------------------- 105
              SWNT++ G +Q      A +    M     E ++V++S                    
Sbjct: 487  VVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHG 546

Query: 106  ---------------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDL 150
                           +++  Y +CG++DKA  + +  P+  +    A +S          
Sbjct: 547  MVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVS---------- 596

Query: 151  AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
                + E P   +V+W +M++GYV N   EDGLK  R+M+   +  +  ++++++  C++
Sbjct: 597  ----YKE-PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACAN 651

Query: 211  LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
               L+ G+ VH  V K     D    + LI MY K G L+DA  +F +    ++V W +M
Sbjct: 652  AGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSM 711

Query: 271  ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
            ISGYA HG+G  A+ LF++M ++G+ P+ +TF+ +L AC+HAGL++ G +YF  M + Y 
Sbjct: 712  ISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYC 771

Query: 331  IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
            I    +H T MVDL GRAG L +  + I K       +++ + LS+CR+HK +++ ++ +
Sbjct: 772  INPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVS 831

Query: 391  MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
              L  + P++  G YV L+N+ A+  +WD+ AR+R  M +  V K PG SWI++   +H 
Sbjct: 832  EMLLQVAPSDP-GAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHT 890

Query: 451  FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
            F  GDR HP+   I+  L  L  R+K  GY  D++  +  V EE  E L+  HSEKLA+ 
Sbjct: 891  FVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVV 950

Query: 511  FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
            FG+I     TPIR+ KNLR+C DCH   KY S +  REIIVRD  RFHHFK G+CSCGDY
Sbjct: 951  FGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDY 1010

Query: 571  W 571
            W
Sbjct: 1011 W 1011



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 200/400 (50%), Gaps = 34/400 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           N +L  +AK    +  AQ+LFD+IPQ +  ++ I++S      S ++V  F+ F+ +  K
Sbjct: 328 NHLLTLYAKSN-NMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMV--FNLFREMQAK 384

Query: 69  DTASWNTMISGFVQ----KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA 120
                   +S  ++      N+   + +   M       + V  ++++  Y++C   + A
Sbjct: 385 GACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYA 444

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF++     VV+W  MI  Y++ G V+ +  +F  +P K++V+WN ++ G ++  +  
Sbjct: 445 ERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYER 504

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L+ L  M+  G   +A + S  L+  S LS ++LG+Q+H +V K     D    + L+
Sbjct: 505 HALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLV 564

Query: 241 SMYCKCGDLEDACKLF----LEIQRK------------DVVTWNAMISGYAQHGKGEKAL 284
            MYCKCG ++ A  +     L++ RK             +V+W +M+SGY  +GK E  L
Sbjct: 565 EMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGL 624

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMV 342
           + F  M  E +  D  T   ++ AC +AG+++ G ++  + V    I  + D Y  + ++
Sbjct: 625 KTFRLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYVQK--IGHRIDAYVGSSLI 681

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           D+  ++G L +A  ++ +   +P   ++ +++S   +H +
Sbjct: 682 DMYSKSGSLDDAW-MVFRQSNEPNIVMWTSMISGYALHGQ 720



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H L  K+   +       L+++Y K  ++  A KLF EI +++  TW  +ISG+A+ G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ-------- 320
            E    LF +M+ +G  P+  T  ++L  C+           HA ++  GI         
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 321 ----YFDSMVNDYG-----IAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               Y    V +Y      +  + D   +  M+    RAG + +++D+ +++P+K
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYK 485


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/519 (37%), Positives = 311/519 (59%), Gaps = 9/519 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS--GYIEC 114
            F  +  +D  S+N MI+G+   +  +    LF  M     ++ ++ +++++S  G +  
Sbjct: 297 LFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPH 356

Query: 115 GQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             + K +  +L  +      +   A+I  Y K G +D A+  F     K  V+W AMI G
Sbjct: 357 IGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITG 416

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
            V+N   E+ L+L   M   G+ P+ ++ SS +   S+L+ + LG+Q+H  + +S     
Sbjct: 417 CVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSS 476

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             + + L+ MY KCG L++A + F E+  ++ ++WNA+IS YA +G+ + A+++F+ M  
Sbjct: 477 VFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLC 536

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G KPDS+TF+++L AC+H GL +  ++YF+ M  +YGI+   +HY+C++D LGR G+  
Sbjct: 537 YGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFD 596

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           +  +++ +MPF+  P I+ ++L +CR H   DLA  AA  LF++   +A   YV L+NI+
Sbjct: 597 KVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATP-YVILSNIF 655

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A   KW+D A ++  M++  + K  GYSW+EV   V+ F S D+ +P +  I ++L+ L 
Sbjct: 656 AKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLY 715

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           K M   GY PD    L  V +++K + L +HSE+LAIAF LI  P GTPIRV KNL  C 
Sbjct: 716 KEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLSACV 775

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH A K +S I  R+IIVRD++RFHHFKDG CSCGDYW
Sbjct: 776 DCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG 110
           + AA   FQ +P +D+ ++N M+ G  ++ + A+A DLF AM  K       ++S +++ 
Sbjct: 191 LAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTV 250

Query: 111 YIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
               G L    +   L   A   +V    +++  Y K   +D  +KLF EM  ++ V++N
Sbjct: 251 ATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYN 310

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
            MIAGY  N  A   L+L R M  L     A   +S+L     +  + +GKQ+H  +   
Sbjct: 311 VMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLL 370

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
            L  +      LI MY KCG L+ A   F+    K  V+W AMI+G  Q+G+ E+AL+LF
Sbjct: 371 GLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLF 430

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
             M+  G+ PD  TF + + A ++  ++ LG Q    ++   G  +     + ++D+  +
Sbjct: 431 CGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRS-GHMSSVFSGSALLDMYTK 489

Query: 348 AGKLVEAVDLIKKMP 362
            G L EA+    +MP
Sbjct: 490 CGCLDEALQTFDEMP 504



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 51/364 (14%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA-SWNTMISGFVQKKNMAKARDLFL 94
           P     N++L   L++S  +  A   F ++P ++ A S N M+SG+ +   ++ A  LFL
Sbjct: 32  PATYRLNLLLHS-LISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFL 90

Query: 95  AMPE--KNSVSWSAMISGYIEC--GQLDKAVELFK------VAPVK-------------- 130
           + P   +++V+W+ MI  +      +   AV LF+      VAP +              
Sbjct: 91  SSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASG 150

Query: 131 -----------------------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
                                  +VV    ++  Y K G +  A ++F EMP ++ VT+N
Sbjct: 151 GTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYN 210

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           AM+ G  +     + L L   M   G+     + S+VL   + +  L LG+QVH LV ++
Sbjct: 211 AMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARA 270

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
               +      L+  Y KC  L++  KLF E+  +D V++N MI+GYA +      LRLF
Sbjct: 271 T-SSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLF 329

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            +M+       ++ + +LL        + +G Q    +V   G++++      ++D+  +
Sbjct: 330 REMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVL-LGLSSEDLVGNALIDMYSK 388

Query: 348 AGKL 351
            G L
Sbjct: 389 CGML 392


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 288/438 (65%), Gaps = 3/438 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR--MMIGLG 193
           T ++  Y KFG V  A  +F++MP KN+V+W+AMIA Y +N  A + L+L R  M+    
Sbjct: 214 TTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQD 273

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + PN+ ++ SVL  C+ L++L+ G+ +H  + +  L      ++ L++MY +CG LE   
Sbjct: 274 LCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQ 333

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F ++ ++DVV+WN++IS Y  HG G+KA+ +F++M   G++P  I+FV++L AC+HAG
Sbjct: 334 RVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAG 393

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G   F+SM   +GI    +HY CMVDLLGRA +L EA  +I+ M  +P P ++G+L
Sbjct: 394 LVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSL 453

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L +CR+H  ++LAE A++ LF+L P N AG YV LA+IYA    WD V R++  ++   +
Sbjct: 454 LGSCRIHCNVELAERASIRLFDLEPTN-AGNYVLLADIYAEAGMWDGVKRVKKLLEARGL 512

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+PG SWIEV   ++ F S D V+P +  +H  L +L   +K  GYVP  +  L+ +  
Sbjct: 513 QKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKA 572

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
             KE+++L HSEKLA+AFGLI    G  IR+ K+LR+C DCH  TK+IS    +EI+VRD
Sbjct: 573 AEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRD 632

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFHHF+DG CSCGDYW
Sbjct: 633 VNRFHHFRDGVCSCGDYW 650



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 156/363 (42%), Gaps = 59/363 (16%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE--- 122
           P   TA  N +I    ++ N+ +A +L    P     ++  +I   + C   +  ++   
Sbjct: 35  PTASTADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLI---LSCTHQNSLLDAQR 91

Query: 123 ----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
               L +    +     T +I+ Y  F  +D A K+FD+   + +  +NA+         
Sbjct: 92  VHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGH 151

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGC----SHLSSLQLGKQVHQLVFKSPLCKDTT 234
            E+ L + R M  +GI  +  + + VL  C      +S L  G+++H  + +        
Sbjct: 152 GEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVH 211

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK--MKD 292
            +T L+ MY K G + +A  +F ++  K+VV+W+AMI+ YA++GK  +AL LF +  ++ 
Sbjct: 212 IMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLET 271

Query: 293 EGMKPDSITFV-----------------------------------ALLLACNHAGLVDL 317
           + + P+S+T V                                   AL+      G ++L
Sbjct: 272 QDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLEL 331

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLL 374
           G + FD M     ++     +  ++   G  G   +A+ + ++M +   +P P  F ++L
Sbjct: 332 GQRVFDQMDKRDVVS-----WNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVL 386

Query: 375 SAC 377
            AC
Sbjct: 387 GAC 389



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 117/254 (46%), Gaps = 38/254 (14%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSA--------- 106
           F ++P+K+  SW+ MI+ + +     +A +LF  +  +      NSV+  +         
Sbjct: 233 FNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALA 292

Query: 107 ------MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
                 +I GYI    LD       + PV S     A+++ Y + GK++L +++FD+M  
Sbjct: 293 ALEQGRLIHGYILRKGLD------SILPVIS-----ALVTMYARCGKLELGQRVFDQMDK 341

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +++V+WN++I+ Y  + + +  + +   M   G+ P+  S  SVL  CSH   +  GK +
Sbjct: 342 RDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKML 401

Query: 221 -HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHG 278
            + +     +C        ++ +  +   LE+A K+   ++       W +++     H 
Sbjct: 402 FNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHC 461

Query: 279 KGEKA----LRLFD 288
             E A    +RLFD
Sbjct: 462 NVELAERASIRLFD 475


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/565 (40%), Positives = 320/565 (56%), Gaps = 19/565 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLPI------KDTASW 73
           G LKDA +LFD +PQ D V++  +LS C L N    +    F   LPI       D   +
Sbjct: 57  GLLKDALKLFDALPQQDHVAWATVLSACNLSN----LPHKAFSISLPILHEGLQPDHFVF 112

Query: 74  NTMIS-----GFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +++I      G V  K   +    FL  P  ++ V  S+++  Y +    D    +F   
Sbjct: 113 SSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSI 172

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
              S ++WTAMISGY + G+   A +LF E P KNL  W A+I+G V++  A D L L  
Sbjct: 173 FELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFV 232

Query: 188 MMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
            M   G+   +   LSSV+  C++ +  +LGKQVH +V              L+ MY KC
Sbjct: 233 EMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKC 292

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            D+  A  +F E++RKDVV+W ++I G AQHG  E+AL L+D M   G+KP+ +TFV L+
Sbjct: 293 SDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLI 352

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+H GLV  G   F SMV D+GI     HYTC++DL  R+G L EA +LI+ MP KP 
Sbjct: 353 YACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPD 412

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              +  LLSAC+ H    +A   A +L +L P + +  Y+ L+NIYA    W++V+ +R 
Sbjct: 413 EPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSS-YILLSNIYAGAGMWENVSMVRK 471

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            M    V K+PGYS +++G     F +G+   P    I   + +L+  M+  GYVPD   
Sbjct: 472 LMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTSS 531

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            L  + ++ KE+ L +HSE+LA+A+GL+K   GT IR+ KNLRVCGDCH   K ISAI  
Sbjct: 532 VLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAITS 591

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI VRD  R+HHFKDG CSC D+W
Sbjct: 592 REIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 142/313 (45%), Gaps = 46/313 (14%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++++W ++++G+A+   KL+                                 A + F+ 
Sbjct: 176 SSISWTAMISGYARSGRKLE---------------------------------ALELFRE 202

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYI-ECG-----QL 117
            P K+  +W  +ISG VQ  N   A  LF+ M  E  S++   ++S  +  C      +L
Sbjct: 203 SPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVREL 262

Query: 118 DKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
            K V   +  +     +    A++  Y K   V  A+ +F EM  K++V+W ++I G  +
Sbjct: 263 GKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQ 322

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTT 234
           +  AE+ L L   M+  G++PN  +   ++  CSH+  +  G+ + + +V    +     
Sbjct: 323 HGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQ 382

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
             T L+ ++ + G L++A  L   +  K D  TW A++S    HG  + A+R+ D + D 
Sbjct: 383 HYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLD- 441

Query: 294 GMKPDSITFVALL 306
            +KP+  +   LL
Sbjct: 442 -LKPEDPSSYILL 453



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 34/218 (15%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            +I  Y K G +  A KLFD +P ++ V W  +++    ++       +   ++  G++P
Sbjct: 48  TLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQP 107

Query: 197 NASSLSSVLLGCSHLSS--LQLGKQVHQLVFKSPLCKD---------------------- 232
           +    SS++  C++L S  ++LGKQ+H     SP  +D                      
Sbjct: 108 DHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRA 167

Query: 233 ---------TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
                    + + T +IS Y + G   +A +LF E   K++  W A+ISG  Q G    A
Sbjct: 168 VFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDA 227

Query: 284 LRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQ 320
           L LF +M+ EG+   D +   +++ AC ++ + +LG Q
Sbjct: 228 LYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQ 265



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 32/181 (17%)

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
           + K++H  + KS L         LI  Y KCG L+DA KLF  + ++D V W  ++S   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--LGIQ---------YFD- 323
                 KA  +   +  EG++PD   F +L+ AC + G V   LG Q         +F+ 
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 324 -----SMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKMPF 363
                S+V+ Y     PD+               +T M+    R+G+ +EA++L ++ PF
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPF 205

Query: 364 K 364
           K
Sbjct: 206 K 206


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/440 (44%), Positives = 277/440 (62%), Gaps = 2/440 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   ++++  Y K G++  A K+FDEMP +N+VTW+ M+ GY +    E+ L L +  + 
Sbjct: 151 VFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALF 210

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +  N  S SSV+  C++ + L+LG+Q+H L  KS     +   + L+S+Y KCG  E 
Sbjct: 211 ENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEG 270

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A ++F E+  K++  WNAM+  YAQH   +K + LF +MK  GMKP+ ITF+ +L AC+H
Sbjct: 271 AYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSH 330

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
           AGLVD G  YFD M  +  I     HY  +VD+LGRAG+L EA+++I  MP  P  +++G
Sbjct: 331 AGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWG 389

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL++C VHK  +LA FAA  +F L P  ++G ++ L+N YAA  +++D A+ R  +++ 
Sbjct: 390 ALLTSCTVHKNTELAAFAADKVFELGPV-SSGMHISLSNAYAADGRFEDAAKARKLLRDR 448

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
              K  G SW+E    VH F +G+R H +   I+EKL EL + M+ AGY+ D  + L  V
Sbjct: 449 GEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREV 508

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
             + K Q + +HSE+LAIAFGLI  P   PIRV KNLRVCGDCH A K++S   +R IIV
Sbjct: 509 DGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIV 568

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFH F+DG CSC DYW
Sbjct: 569 RDNNRFHRFEDGKCSCNDYW 588



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 99/170 (58%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           + + F++ P K+  TW+++I+ + +N      L+ L+ M+   +RP+   L S    C+ 
Sbjct: 69  SRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAI 128

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           LS   +G+ VH L  K+    D    + L+ MY KCG++  A K+F E+ +++VVTW+ M
Sbjct: 129 LSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGM 188

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           + GYAQ G+ E+AL LF +   E +  +  +F +++  C ++ L++LG Q
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ 238



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 125/284 (44%), Gaps = 43/284 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTM 76
           G++  A+++FD++PQ +VV+++ M+       ++  A + F    F+ L + D  S++++
Sbjct: 165 GEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDY-SFSSV 223

Query: 77  ISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           IS       +   R +      +  + +S   S+++S Y +CG  + A ++F   PVK++
Sbjct: 224 ISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNL 283

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
             W AM+                                 Y ++S  +  ++L + M   
Sbjct: 284 GIWNAMLK-------------------------------AYAQHSHTQKVIELFKRMKLS 312

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G++PN  +  +VL  CSH   +  G+     + +S +         L+ M  + G L++A
Sbjct: 313 GMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEA 372

Query: 253 CKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
            ++   + I   + V W A+++    H   E A    DK+ + G
Sbjct: 373 LEVITNMPIDPTESV-WGALLTSCTVHKNTELAAFAADKVFELG 415


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/479 (37%), Positives = 302/479 (63%), Gaps = 6/479 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+++ G+A Q G++  A ELFD++P+ + VS+N M+   L+    +  A +
Sbjct: 135 MPERNIVSWNTMIDGYA-QSGRIDKALELFDEMPERNTVSWNTMIKA-LVQRGRIDEAMN 192

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+R+PIKD  SW  M+ G  +   + +AR LF  MPE+N +SW+AMI+GY    ++D+A
Sbjct: 193 LFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEA 252

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF+V P +   +W  MI+G+++  +++ A  LFD MP KN+++W AMI GYVEN   E
Sbjct: 253 DQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENE 312

Query: 181 DGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + LK+   M+  G ++PN  +  S+L  CS L+ L  G+Q+HQL+ KS   ++    + L
Sbjct: 313 EALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSAL 372

Query: 240 ISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           I+MY K G+L  A K+F    + ++D+++WN+MI+ YA HG G++A+ ++D+M+  G KP
Sbjct: 373 INMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKP 432

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
             +T++ LL AC+HAGLV+ G+++F  +V D  +  + +HYTC+VDL GRAG+L + ++ 
Sbjct: 433 SEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLNF 492

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I     +   + +G +LSAC VH  + +A+     +     ++ AG YV ++NIYAA  K
Sbjct: 493 INCDDARLSRSFYGAILSACNVHSEVSIAKEVVKKVLETG-SDDAGTYVMMSNIYAASGK 551

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
            +  A +R+ MKE  + K PG SW+++G   H F  GD+ HP+  ++   + +L  +M+
Sbjct: 552 REKAAEMRMKMKEKGLKKQPGCSWVKIGNQTHLFVVGDKSHPQFEALDSIVSDLRNKMR 610



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 216/412 (52%), Gaps = 80/412 (19%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +  V W  V+ G+ K  G +++A+ELFD++  + +VV++  M+S   L S  +  A   F
Sbjct: 75  RDVVTWTDVITGYIKL-GNMREARELFDRVDSRKNVVTWTAMVSG-YLRSKQLSVAETLF 132

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           Q +P ++  SWNTMI G+ Q   + KA +LF  MPE+N+VSW+ MI   ++ G++D+A+ 
Sbjct: 133 QEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMN 192

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF+  P+K V++WTAM+ G  K GKVD A +LFD MP +N+++WNAMI GY  N+  ++ 
Sbjct: 193 LFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEA 252

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            +L ++M      P                                  +D  +   +I+ 
Sbjct: 253 DQLFQVM------PE---------------------------------RDFASWNTMITG 273

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSIT 301
           + +  ++  AC LF  + +K+V++W AMI+GY ++ + E+AL++F KM +D  +KP+  T
Sbjct: 274 FIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGT 333

Query: 302 FVALLLACNH-AGLVDLGIQYFD---------------SMVNDYG-----IAAKP---DH 337
           +V++L AC+  AGLV+ G Q                  +++N Y      IAA+    + 
Sbjct: 334 YVSILSACSDLAGLVE-GQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNG 392

Query: 338 YTCMVDLL------------GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
             C  DL+            G   + +E  D ++K  FKP    +  LL AC
Sbjct: 393 LVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFAC 444



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 139/286 (48%), Gaps = 22/286 (7%)

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           VQ +N+ ++     + P      W  +I    + G+L +A +LF   P + VV WT +I+
Sbjct: 28  VQLRNLVRSIYSSSSKPRVPRPEW--LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVIT 85

Query: 141 GYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           GY+K G +  A +LFD + + KN+VTW AM++GY+ +        L + M      P  +
Sbjct: 86  GYIKLGNMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEM------PERN 139

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
            +S   +   +  S ++ K +   +F     ++T +   +I    + G +++A  LF  +
Sbjct: 140 IVSWNTMIDGYAQSGRIDKALE--LFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERM 197

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             KDV++W AM+ G A++GK ++A RLFD M +  +    I++ A++    +   +D   
Sbjct: 198 PIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNI----ISWNAMITGYTYNNRIDEAD 253

Query: 320 QYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           Q F  M   D+        +  M+    R  ++  A  L  +MP K
Sbjct: 254 QLFQVMPERDFA------SWNTMITGFIRNREINRACGLFDRMPQK 293



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 17/207 (8%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI   CK G L +A KLF  +  +DVVTW  +I+GY + G   +A  LFD++     + +
Sbjct: 52  LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDS---RKN 108

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +T+ A++     +  + +    F  M     ++     +  M+D   ++G++ +A++L 
Sbjct: 109 VVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVS-----WNTMIDGYAQSGRIDKALELF 163

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
            +MP +     + T++ A     R+D     AMNLF   P      +  + +  A   K 
Sbjct: 164 DEMPER-NTVSWNTMIKALVQRGRID----EAMNLFERMPIKDVISWTAMVDGLAKNGKV 218

Query: 419 DDVARIRLSMKENNVVK----MPGYSW 441
           D+  R+   M E N++     + GY++
Sbjct: 219 DEARRLFDCMPERNIISWNAMITGYTY 245


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 279/446 (62%), Gaps = 4/446 (0%)

Query: 129  VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLL 186
            V  V    +++  Y   G  + A K+FDEMP +  NLV+WN+M+  +  N    + L + 
Sbjct: 836  VTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF 895

Query: 187  RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
              M+G+   P+  ++ SVL  C+   +L LG++VH  V K  L +++     LI +Y KC
Sbjct: 896  WEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKC 955

Query: 247  GDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G + DA ++F E+   + VV+W ++I G A +G G++AL LF  M+ E + P  IT V +
Sbjct: 956  GSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGV 1015

Query: 306  LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
            L AC+H GLVD G +YFD M  DYGI+ + +H  CMVDLLGRAG++ EA D I  MP +P
Sbjct: 1016 LYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEP 1075

Query: 366  QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
               ++ TLL +C +HK+L+L + A   L  L+P ++ G YV L+N+YAA+  W DV  +R
Sbjct: 1076 NAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHS-GDYVLLSNLYAAVGMWADVHVLR 1134

Query: 426  LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             +M ++ V K PG+S +E+   V+EF  GDR HPE   I+E L E+ +R++  GY+P   
Sbjct: 1135 KTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTS 1194

Query: 486  FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
              L  + EE KE  L +HSE+LAIAF L+K   G PIR+ KNLR+CGDCH A   IS + 
Sbjct: 1195 NVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVY 1254

Query: 546  KREIIVRDTTRFHHFKDGTCSCGDYW 571
             REIIVRD +RFHHF+ G CSC DYW
Sbjct: 1255 DREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+L R  + L   P+  +   ++  C+ L +L+ G+ +H    K+           L+ 
Sbjct: 791 ALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVH 847

Query: 242 MYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +Y  CG  E A K+F  + ++ +++V+WN+M++ +A +G+  + L +F +M      PD 
Sbjct: 848 LYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDG 907

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            T V++L AC   G + LG +     V   G+         ++DL  + G + +A  + +
Sbjct: 908 FTIVSVLTACAEFGALALG-RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFE 966

Query: 360 KM 361
           +M
Sbjct: 967 EM 968



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 111/246 (45%), Gaps = 29/246 (11%)

Query: 57   AAFDFFQRLPIK--DTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMI 108
            +A   F  +P++  +  SWN+M++ F       +   +F  M      P+  ++   +++
Sbjct: 857  SAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIV--SVL 914

Query: 109  SGYIECGQL--DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNL 163
            +   E G L   + V ++  KV  V++     A+I  Y K G V+ A ++F+EM   + +
Sbjct: 915  TACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTV 974

Query: 164  VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
            V+W ++I G   N + ++ L+L  +M    + P   ++  VL  CSH   +  G +    
Sbjct: 975  VSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDR 1034

Query: 224  VFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 275
            +      K+   ++P       ++ +  + G +E+A    + +    + V W  ++   A
Sbjct: 1035 M------KEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCA 1088

Query: 276  QHGKGE 281
             H K E
Sbjct: 1089 MHKKLE 1094


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 334/586 (56%), Gaps = 46/586 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++  +AK  GK++DA ++F+++   DVV++N M++    N   +D ++ F   +   I
Sbjct: 270 NALVDMYAKC-GKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKI 328

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL--DKA 120
           + D  +W+++ISG+ Q+    +A D+F  M       N V+  +++S     G L   K 
Sbjct: 329 ESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKE 388

Query: 121 VELFKVAPV---------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAM 169
              + V  +           +    A+I  Y K   +++A  +FDE+  K+  +VTW  M
Sbjct: 389 THCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVM 448

Query: 170 IAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           I GY ++  A   L+L   M  +   I PN  ++S VL+ C+ L++L+ GKQ+H  V + 
Sbjct: 449 IGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRR 508

Query: 228 PLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
                        LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+ E A R
Sbjct: 509 SRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFR 568

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +FD+M+ E +  D ITF+ +L AC+H+G+             D+G+    +HY CMVDLL
Sbjct: 569 VFDEMRKEALVLDGITFLVVLYACSHSGM-------------DFGVDPGVEHYACMVDLL 615

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           GRAG+L EA+ LI  MP +P P ++  LLSACR+H   +LAEFAA  L  L   N  G Y
Sbjct: 616 GRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADND-GTY 674

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
             L+NIYA  ++W DVARI   MK   + K+PG+SW++    +  F  GDR H +   I+
Sbjct: 675 TLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIY 734

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           E L +L KR+K         F+LH V +E K   L  HSEKLA+A+ ++ +P G PIR+ 
Sbjct: 735 ETLADLIKRIKA-------NFSLHDVDDEEKGDQLSEHSEKLALAYAILTLPPGAPIRIT 787

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLR+CGD H A  YIS I + EII+RD++RFH FK+G+CSC  YW
Sbjct: 788 KNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 833



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 168/380 (44%), Gaps = 57/380 (15%)

Query: 59  FDFFQRLPIKDTASWNTMIS----GFVQKKNMAKARDLFLA---MPEKNSVSWSAMISGY 111
           FD      I D+ +WN+++S     FV    ++  R++ +    +P+   V     + GY
Sbjct: 184 FDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGY 243

Query: 112 IECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           +  G   + V  F V    V+ V    A++  Y K GK++ A K+F+ M  K++VTWNAM
Sbjct: 244 LGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAM 303

Query: 170 IAGYVENSWAEDGLKL-----------------------------------LRMMIGLGI 194
           + GY +N   ED L L                                    R M G   
Sbjct: 304 VTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRC 363

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVH----QLVFKSPLCKDT---TALTPLISMYCKCG 247
           RPN  +L S+L  C+ + +L  GK+ H    + + K     DT     +  LI MY KC 
Sbjct: 364 RPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCK 423

Query: 248 DLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFV 303
            LE A  +F EI  + +DVVTW  MI GYAQHG    AL+LF +M   D  + P+  T  
Sbjct: 424 SLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 483

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEAVDLIKKMP 362
            +L+AC     +  G Q    ++    I +       C++D+  ++G +  A  +   M 
Sbjct: 484 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS 543

Query: 363 FKPQPAIFGTLLSACRVHKR 382
            K     + +LL+   +H R
Sbjct: 544 -KRNAVSWTSLLTGYGMHGR 562



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVE--LF 124
           WN +I   +   +   A  LF  M      P+  +  +     G I   +L  ++   + 
Sbjct: 94  WNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVI 153

Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL---VTWNAMIAGYVENSWAED 181
           ++    +V    A+IS Y K   V  A K+FDE+  + +   VTWN++++ Y        
Sbjct: 154 RLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNV 213

Query: 182 GLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
            + L R M +G GI P+   + ++L  C +L     G+QVH    +S L +D      L+
Sbjct: 214 AVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALV 273

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG +EDA K+F  ++ KDVVTWNAM++GY+Q+G+ E AL LF KM++E ++ D +
Sbjct: 274 DMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVV 333

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           T+ +++      G    G +  D      G   +P+  T M
Sbjct: 334 TWSSVISGYAQRG---FGCEAMDVFRQMCGCRCRPNVVTLM 371



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 8/236 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           T +I  Y+    +  A  L ++  T    ++  WN +I   +  +     L+L R M  L
Sbjct: 61  TNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTL 120

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              P+  +   V   C  +S+ +LG  +H  V +     +      +ISMY KC  +  A
Sbjct: 121 HWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHA 180

Query: 253 CKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLA 308
            K+F E+  +   D VTWN+++S Y+       A+ LF +M    G+ PD++  V +L  
Sbjct: 181 RKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPV 240

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           C + GL   G Q     V   G+         +VD+  + GK+ +A  + ++M FK
Sbjct: 241 CGYLGLGLCGRQVHGFCVRS-GLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK 295



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 140/337 (41%), Gaps = 73/337 (21%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLS------CILLNSDDVV 56
           V W+SV++G+A QRG   +A ++F ++     +P+VV+   +LS       +L   +   
Sbjct: 333 VTWSSVISGYA-QRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHC 391

Query: 57  AAFDFF----QRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISG 110
            +  F           D A  N +I  + + K++  AR +F  +   +++ V+W+ MI G
Sbjct: 392 YSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGG 451

Query: 111 YIECGQLDKAVELF-----------------------------------------KVAPV 129
           Y + G  + A++LF                                         + + +
Sbjct: 452 YAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRI 511

Query: 130 KSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            S V + A  +I  Y K G VD A+ +FD M  +N V+W +++ GY  +  +ED  ++  
Sbjct: 512 DSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFD 571

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M    +  +  +   VL  CSH S +  G          P  +    +  L+    + G
Sbjct: 572 EMRKEALVLDGITFLVVLYACSH-SGMDFGVD--------PGVEHYACMVDLLG---RAG 619

Query: 248 DLEDACKLFLEIQRKDV-VTWNAMISGYAQHGKGEKA 283
            L +A +L  ++  +   V W A++S    H   E A
Sbjct: 620 RLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELA 656


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 306/524 (58%), Gaps = 11/524 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYI 112
           A D F    ++D  +WN MI+  + K    KA DL   M +      + V+  +++    
Sbjct: 165 ACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224

Query: 113 ECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
           + G L++   L   +      +++    A++  Y K   ++ A+++F+ +  K++++W +
Sbjct: 225 QLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTS 284

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M++G  ++ + ++ L L + M    I  +  +L  VL  C+   +L  GK +H L+ K  
Sbjct: 285 MLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFE 344

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           +  D    T L+ MY KCG ++ A ++F  ++ ++V TWNA+I G A HG GE A+ LFD
Sbjct: 345 INCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFD 404

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M+ + + PD +TF+ALL AC+HAGLVD G+  F +M N + I  + +HY C+VDLL RA
Sbjct: 405 QMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRA 464

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
            K+ +A+  I+ MP K    ++ TLL ACR     DLAE     +  L P ++ G YV L
Sbjct: 465 RKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEP-DSCGRYVML 523

Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
           +N+YA + +WD   ++R  MK   + K PG SWIE+  ++H+F +GDR H +   I+  +
Sbjct: 524 SNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMI 583

Query: 469 KELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           +E+ +R+ L  G+VP     L  + EE KE  L  HSEKLAIA GLI  P G+PIR+ KN
Sbjct: 584 EEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKN 643

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVC DCH   K  S +  REI+ RD +RFHHFK+G+CSC D+W
Sbjct: 644 LRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 205/502 (40%), Gaps = 121/502 (24%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSW 104
           L +S D+  A   F ++   D    NTMI G+ + +N  +A  L+  M E+    ++ ++
Sbjct: 55  LSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTY 114

Query: 105 -----------------------------------SAMISGYIECGQLDKAVELFKVAPV 129
                                              +A+I  Y  CG    A ++F  + V
Sbjct: 115 PFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTV 174

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           + VV W  MI+ ++  G  + A  L DEM   +                           
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD--------------------------- 207

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
               +RP+  ++ S++  C+ L +L+ GK +H    +  L ++      ++ MYCKC D+
Sbjct: 208 ---NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDI 264

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           E A ++F  I+ KDV++W +M+SG A+ G  ++AL LF KM+   ++ D IT V +L AC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK----- 364
              G +D G +Y   +++ + I       T +VD+  + G +  A+ + ++M  +     
Sbjct: 325 AQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 383

Query: 365 -----------------------------PQPAIFGTLLSACRVHKRLD--LAEFAAM-N 392
                                        P    F  LL AC     +D  LA F AM N
Sbjct: 384 NALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 443

Query: 393 LFNLNP-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            F + P     GC V L       +K DD     L+  EN  +K     W    T++   
Sbjct: 444 KFQIEPRMEHYGCVVDL---LCRARKVDDA----LAFIENMPIKANSVLW---ATLLGAC 493

Query: 452 RSGDRVHPELVS-IHEKLKELE 472
           RSG   H +L   I  ++ ELE
Sbjct: 494 RSGG--HFDLAEKIGRRVIELE 513



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 28/265 (10%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           DD+ +A + F R+  KD  SW +M+SG  +     +A  LF  M     E + ++   ++
Sbjct: 262 DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVL 321

Query: 109 SGYIECGQLDKA------VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
           S   + G LD+       ++ F++     +V  TA++  Y K G +DLA ++F  M  +N
Sbjct: 322 SACAQTGALDQGKYIHLLIDKFEINC--DLVLETALVDMYAKCGSIDLALQVFRRMRVRN 379

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           + TWNA+I G   +   ED + L   M    + P+  +  ++L  CSH   +  G  + Q
Sbjct: 380 VFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ 439

Query: 223 LVFKSPLCKDTTALTPLISMY-------CKCGDLEDACKLFLEIQRK-DVVTWNAMISGY 274
            +      K+   + P +  Y       C+   ++DA      +  K + V W  ++   
Sbjct: 440 AM------KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC 493

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDS 299
              G  + A ++  ++ +  ++PDS
Sbjct: 494 RSGGHFDLAEKIGRRVIE--LEPDS 516



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 14/192 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N++L  + K    ++ AQE+F++I + DV+S+  MLS  L  S     A   FQ++ +  
Sbjct: 252 NAILDMYCKC-DDIESAQEVFNRIREKDVLSWTSMLSG-LAKSGYFQEALALFQKMQLNK 309

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMP--EKNS--VSWSAMISGYIECGQLDKAV 121
              D  +   ++S   Q   + + + + L +   E N   V  +A++  Y +CG +D A+
Sbjct: 310 IELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLAL 369

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENS 177
           ++F+   V++V  W A+I G    G  + A  LFD+M    L    VT+ A++       
Sbjct: 370 QVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAG 429

Query: 178 WAEDGLKLLRMM 189
             ++GL + + M
Sbjct: 430 LVDEGLAMFQAM 441



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 194 IRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDL 249
           I+P++  + L SV    +H +S+   KQ H L+ ++ L  +    + LIS       GDL
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             A KLF ++Q  D    N MI GYA+     +A+ L+  M + G+  D+ T+  +L AC
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 310 NHAGLVDLGIQYF-DSMVNDYG 330
              G V LG ++  + + N +G
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFG 143


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 318/556 (57%), Gaps = 34/556 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A+ LF  +P PD   ++ +L         V + F F          S +T++  F
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLK--------VTSKFGF----------SIDTVL--F 176

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWT 136
            +       R LF   P+ N  +++++I    +   L    E+     V      +    
Sbjct: 177 YR-------RMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQA 228

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+I+ Y K   + +A+K+FD MP + ++ WN++I+GY +N   ++ + L  +M+  G +P
Sbjct: 229 ALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQP 288

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +++++ S+L  CS L +L  G  +H     +    +    T LI+MY +CG++  A ++F
Sbjct: 289 DSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 348

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ ++VVTW AMISGY  HG G +A+ LF +M+  G +P++ITFVA+L AC H+GL+D
Sbjct: 349 DSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLID 408

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK-MPFKPQPAIFGTLLS 375
            G + F SM   YG+    +H  CMVD+ GRAG L +A   IKK +P +P PA++ ++L 
Sbjct: 409 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 468

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+H+  DL    A ++ ++ P N  G YV L+NIYA   + D V  +R  M    + K
Sbjct: 469 ACRMHRNFDLGVKVAEHVLSVEPENP-GHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKK 527

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
             GYS IE+    + F  GD+ HP+  +I+  L EL  R   +GYVP  E  +H + EE 
Sbjct: 528 QVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEE 587

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           ++  L +HSEKLA+AFGL+K   G  IR+ KNLR+C DCH A K+IS I  REIIVRD  
Sbjct: 588 RDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKF 647

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHFKDG+CSC DYW
Sbjct: 648 RFHHFKDGSCSCLDYW 663



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 146/300 (48%), Gaps = 12/300 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +IS     G +  A +LF  +P  +   +++++    +  ++ D +   R M+  G  
Sbjct: 127 TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 186

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  + +SV+  C+ LS+L+LGK++H  V       D      LI++Y K  D++ A K+
Sbjct: 187 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 246

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  + ++ ++ WN++ISGY Q+G  ++++ LF  M + G +PDS T V+LL +C+  G +
Sbjct: 247 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGAL 306

Query: 316 DLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           D G     Y D    D  +       T ++++  R G + +A ++   M  +     +  
Sbjct: 307 DFGCWLHDYADGNGFDLNVVLG----TSLINMYTRCGNVSKAREVFDSMKER-NVVTWTA 361

Query: 373 LLSACRVH--KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           ++S   +H   R  +  F  M  +   P N    +V + +  A     DD  R+  SMKE
Sbjct: 362 MISGYGMHGYGRQAMELFTEMRAYGPRPNNIT--FVAVLSACAHSGLIDDGRRVFSSMKE 419



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 26/176 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +T + WNS+++G+  Q G  +++  LF  +     QPD  +        LL+S   +
Sbjct: 250 MPQRTIIAWNSLISGY-DQNGLPQESIGLFHLMMESGFQPDSATI-----VSLLSSCSQL 303

Query: 57  AAFDFFQRLPIKDTASWN----------TMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
            A DF   L   D A  N          ++I+ + +  N++KAR++F +M E+N V+W+A
Sbjct: 304 GALDFGCWL--HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTA 361

Query: 107 MISGYIECGQLDKAVELFK----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           MISGY   G   +A+ELF       P  + + + A++S     G +D   ++F  M
Sbjct: 362 MISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSM 417



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 55/261 (21%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +QVH  +  S L +  + LT LIS+ C  G +  A +LF  +   D   +++++   ++ 
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPD 336
           G     +  + +M   G    + TF +++ AC     + LG + +   MV  YG     D
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYG----SD 223

Query: 337 HY--TCMVDLLGRAGKLVEAVDLIKKMP-------------------------------- 362
            Y    ++ L  +A  +  A  +   MP                                
Sbjct: 224 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 283

Query: 363 --FKPQPAIFGTLLSACRVHKRLD----LAEFAAMNLFNLN---PANAAGCYVQLANIYA 413
             F+P  A   +LLS+C     LD    L ++A  N F+LN     +    Y +  N+  
Sbjct: 284 SGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSK 343

Query: 414 AMKKWDDVARIRLSMKENNVV 434
           A + +D       SMKE NVV
Sbjct: 344 AREVFD-------SMKERNVV 357


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/520 (38%), Positives = 299/520 (57%), Gaps = 13/520 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE--CGQLDK 119
           F+ + I+D  SW T+++ F Q    ++A ++ L + ++  +  S MI   +E  CG   K
Sbjct: 425 FESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGL--K 482

Query: 120 AVELFKVAPVKSV-------VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           ++ L K     ++       +    +I  Y + G+ D +  LF  +  K++V+W +MI  
Sbjct: 483 SISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINC 542

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
              N      + L   M    I+P++ +L S+L+  + LSSL  GKQVH  + +     +
Sbjct: 543 CTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIE 602

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
              ++ L+ MY  CG +  A ++F   + KDVV W AMI+    HG G++A+ LF +M  
Sbjct: 603 GPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQ 662

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G+ PD ++F+ALL AC+H+ LV+ G  Y D MV+ Y +    +HY C+VD+LGR+G+  
Sbjct: 663 TGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTE 722

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA + IK MP  P+ A++  LL ACRVH+   LA  AA  L  L P N  G Y+ ++N++
Sbjct: 723 EAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDN-PGNYILVSNVF 781

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A M KW++    R  M E  + K P  SWIE+G  +H F SGD  H +  +IH KL E+ 
Sbjct: 782 AEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEIT 841

Query: 473 KRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
           + ++   GYV D  F LH   EE K  +L  HSE++AIAFGLI    G PIR+ KNLRVC
Sbjct: 842 EMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVC 901

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH  TK +S + +R+I+VRD  RFHHF  G+CSC D+W
Sbjct: 902 GDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 180/365 (49%), Gaps = 15/365 (4%)

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSV 102
           C LL  D  +  F++ Q+   +D ASWN+++SG VQ     +A  LF  M       NS 
Sbjct: 212 CGLL--DSALRVFEWLQQ-DARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSY 268

Query: 103 SWSAMISGYIECGQLDKAVELFKV---APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
           +  A++    E G L    EL         +  +   A++  Y K+G+VD A ++F ++ 
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIA 328

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            K+ ++WN+M++ YV+NS+  + +     M+  G +P+ + + S+     HLS L  G++
Sbjct: 329 EKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGRE 388

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
            H    K  L  D      L+ MY KCG +E + K+F  +  +D ++W  +++ +AQ  +
Sbjct: 389 FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSR 448

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +AL +  +++ EG+  DS+   ++L  C     + L  Q     + +  +    ++  
Sbjct: 449 HSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENR- 507

Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLN 397
            ++D+ G  G+   +++L +++  K     + ++++ C  + RL+ A   F  M   N+ 
Sbjct: 508 -LIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQ 565

Query: 398 PANAA 402
           P + A
Sbjct: 566 PDSVA 570



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 106/188 (56%), Gaps = 5/188 (2%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL---LRMMIGL 192
           T ++  Y + G+VD A +LF+ MP + + +WNA++  Y+ +  A + +++   +R     
Sbjct: 99  TKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAP 158

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G  P+  +L+SVL  C      + G +VH L  K  L K T     LI MY KCG L+ A
Sbjct: 159 GSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSA 218

Query: 253 CKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            ++F  +Q+  +DV +WN+++SG  Q+G+  +AL LF  M+  G   +S T VA+L  C 
Sbjct: 219 LRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCA 278

Query: 311 HAGLVDLG 318
             GL+ LG
Sbjct: 279 ELGLLSLG 286



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 187/422 (44%), Gaps = 82/422 (19%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF--- 62
            +  N++L  +AK  G++  A  +F +I + D +S+N MLSC + NS     A DFF   
Sbjct: 301 NIQCNALLVMYAKY-GRVDSALRVFGQIAEKDYISWNSMLSCYVQNS-FYAEAIDFFGEM 358

Query: 63  -QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQ 116
            Q     D A   ++ S       +   R+ F A   K  +       + ++  YI+CG 
Sbjct: 359 LQHGFQPDHACVVSLSSALGHLSRLNNGRE-FHAYAIKQRLHTDLQVGNTLMDMYIKCGS 417

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           ++ + ++F+   ++  ++WT +++ + +  +   A ++  E+                  
Sbjct: 418 IECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQ----------------- 460

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              ++G+ +  MMIG           S+L  C  L S+ L KQVH    ++ L  D    
Sbjct: 461 ---KEGIMVDSMMIG-----------SILETCCGLKSISLLKQVHCYAIRNGLL-DLILE 505

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             LI +Y +CG+ + +  LF  +++KD+V+W +MI+    +G+   A+ LF +M+   ++
Sbjct: 506 NRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQ 565

Query: 297 PDSITFVALLLACNHAGLVDL--GIQ---------------YFDSMVNDYGIAAKPDH-- 337
           PDS+  V++L+A   AGL  L  G Q                  S+V+ Y      ++  
Sbjct: 566 PDSVALVSILVAI--AGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAI 623

Query: 338 -------------YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHK 381
                        +T M++  G  G   +A+DL K+M      P    F  LL AC  H 
Sbjct: 624 RVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACS-HS 682

Query: 382 RL 383
           +L
Sbjct: 683 KL 684


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 320/563 (56%), Gaps = 13/563 (2%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           R K   A  + + +     +S +I+  C +  S  +  A   F+ +    T +WN++I G
Sbjct: 24  RLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRG 83

Query: 80  FVQKKNMAKA-----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----LFKVAPVK 130
           F Q  +  +A     R LF ++   ++ ++S  +        L K  E    + +    +
Sbjct: 84  FAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYER 143

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
            VV  T ++  Y + G V++A  +FD MP ++LV WNAMI+ Y +  + ++ L++   M 
Sbjct: 144 DVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMR 203

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
              +  +  +L  +L  CSH+ +L +G ++H++  +  L ++      LI MY KCG L+
Sbjct: 204 NENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLD 263

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
            A ++F  + R D  TWN+MI G+  HG G++A+  F++M + G++P+SI F+ LL  C+
Sbjct: 264 GALEVFNGMPR-DAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCS 322

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H GLV+ G+++F  M + + +     HY C+VD+ GRAGKL +A+++I   P++  P ++
Sbjct: 323 HQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLW 382

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
             LLS+ ++HK + + E A  NL  L   NA  C V LA IYA       VAR+R  +K+
Sbjct: 383 RILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDC-VLLATIYAGANDEQGVARMRKLIKK 441

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALH 489
             +   PG+SWIEV   VH F   D+ HP+   I++KL+E+  +  +AGYV D  +F  H
Sbjct: 442 QGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIFH 501

Query: 490 -AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
            +  EE  E    +HSEKLAIAFGL K P GT +R+ KNLRVC DCH  TK++S    R+
Sbjct: 502 GSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRD 561

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           IIVRD  RFHHFK G CSC DYW
Sbjct: 562 IIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 162/382 (42%), Gaps = 59/382 (15%)

Query: 6   TVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIML----------SCILLN 51
           T  WNS++ GFA+    ++      + LFD +  PD  +++  L           C  ++
Sbjct: 74  TQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVH 133

Query: 52  SDDVVAAFD------------------------FFQRLPIKDTASWNTMISGFVQKKNMA 87
              +   ++                         F  +P +D  +WN MIS + Q     
Sbjct: 134 GSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQ 193

Query: 88  KARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMI 139
           +A  ++  M  +N      +   ++S     G L+  V+L ++A     +++V    A+I
Sbjct: 194 EALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALI 253

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             Y K G +D A ++F+ MP ++  TWN+MI G+  + + ++ +     M+  G+RPN+ 
Sbjct: 254 DMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSI 312

Query: 200 SLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           +   +L GCSH   ++ G +  HQ+  K  +         ++ MY + G LE A ++  +
Sbjct: 313 AFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGD 372

Query: 259 IQ-RKDVVTWNAMISGYAQHGK---GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
              + D V W  ++S    H     GE A+R   ++              +LLA  +AG 
Sbjct: 373 SPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGD------CVLLATIYAGA 426

Query: 315 VD-LGIQYFDSMVNDYGIAAKP 335
            D  G+     ++   GI   P
Sbjct: 427 NDEQGVARMRKLIKKQGIKTTP 448


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
            A    +RLP  D  SW  MI+G+VQ    ++A  LF  M  +    +++ +++ IS    
Sbjct: 517  ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 114  CGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               L +  ++   +      A      A+IS Y + G++  A   F+++  KN ++WN++
Sbjct: 577  IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 170  IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
            ++G  ++ + E+ L++   M+      N  +  S +   + L++++ G+Q+H +V K+  
Sbjct: 637  VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY 696

Query: 230  CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +      LIS+Y K G + DA + F ++  ++V++WNAMI+GY+QHG G +ALRLF++
Sbjct: 697  DSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 290  MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
            MK  G+ P+ +TFV +L AC+H GLV  G+ YF+SM   + +  K +HY C+VDLLGRAG
Sbjct: 757  MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 350  KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            +L  A++ IK+MP      I+ TLLSAC +HK +++ E AA +L  L P ++A  YV ++
Sbjct: 817  QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA-TYVLIS 875

Query: 410  NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
            NIYA  ++W      R  MK+  V K PG SWIEV   VH F +GD++HP    I+E + 
Sbjct: 876  NIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIG 935

Query: 470  ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
             L +R    GYV D    L+   +  K+ +   HSEKLAIAFGL+ +    PIRV KNLR
Sbjct: 936  HLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLR 995

Query: 530  VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            VC DCH   KY+S I  R IIVRD  RFHHF  G CSC D+W
Sbjct: 996  VCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 9/318 (2%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAM 107
           S  +++A   F  +  +D  S+N++ISG VQ+    +A +LF  M       + ++ +++
Sbjct: 309 SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASL 368

Query: 108 ISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +S     G L K ++L     K      ++   +++  Y K   V+ A K F    T+N+
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENI 428

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V WN M+  Y +     D  ++ R M   G+ PN  +  S+L  C+ L +L LG+Q+H  
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K+    +    + LI MY K G L  A ++   +   DVV+W AMI+GY QH    +A
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           L+LF++M+  G++ D+I F + + AC     +  G Q   +     G  A       ++ 
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALIS 607

Query: 344 LLGRAGKLVEAVDLIKKM 361
           L  R G++ EA    +K+
Sbjct: 608 LYARCGRIQEAYLAFEKI 625



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 186/400 (46%), Gaps = 48/400 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC--------- 47
           MN +  V++NS+++G  +Q G    A ELF K+ +    PD ++   +LS          
Sbjct: 322 MNSRDGVSYNSLISGLVQQ-GFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 48  ----------------ILLNSD---------DVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                           I+L            DV  A  FF     ++   WN M+  + Q
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQ 440

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL----DKAVELFKVAPVKSVVA 134
             N++ + ++F  M  +    N  ++ +++      G L         + K     +V  
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            + +I  Y K+G++ LA ++   +P  ++V+W AMIAGYV++    + L+L   M   GI
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGI 560

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +    +S +  C+ + +L+ G+Q+H   + +    D +    LIS+Y +CG +++A  
Sbjct: 561 QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYL 620

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F +I  K+ ++WN+++SG AQ G  E+AL++F +M     + +  T+ + + A      
Sbjct: 621 AFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLAN 680

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +  G Q   SMV   G  ++ +    ++ L  ++G + +A
Sbjct: 681 IKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 9/276 (3%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D   A   F     +   SWN MI  FV +K+  +   LF  M  +         +G ++
Sbjct: 108 DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 114 -CGQLDKAVELFKVAPVK--------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
            C   D A    K    +        S +    +I  Y K G ++ A+K+F+ +  K++V
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TW AMI+G  +N   E+ + L   M    I P    LSSVL   + +   +LG+Q+H LV
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K     +T     L+++Y +   L  A ++F  +  +D V++N++ISG  Q G  ++AL
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            LF KM+ + +KPD IT  +LL AC   G +  G+Q
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           +++  Y + G    A K+FDE   +++ +WN MI  +V          L R M+  GI P
Sbjct: 98  SLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITP 157

Query: 197 NASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           N  + + VL  C     +    KQVH   F             LI +Y K G +E A K+
Sbjct: 158 NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  I  KD+VTW AMISG +Q+G  E+A+ LF  M    + P      ++L A     L 
Sbjct: 218 FNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           +LG Q    +V  +G  ++   Y C  +V L  R+ KL+ A  +   M
Sbjct: 278 ELGEQ-LHCLVIKWGFHSET--YVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 154/378 (40%), Gaps = 88/378 (23%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           SVL     + G+L  A  +  ++P+ DVVS+  M++   +  D    A   F+ +  +  
Sbjct: 502 SVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG-YVQHDMFSEALQLFEEMEYRGI 560

Query: 69  -------------------------------------DTASWNTMISGFVQKKNMAKARD 91
                                                D +  N +IS + +   + +A  
Sbjct: 561 QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYL 620

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------------------------- 124
            F  + +KN++SW++++SG  + G  ++A+++F                           
Sbjct: 621 AFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLAN 680

Query: 125 --KVAPVKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             +   + S+V  T          ++IS Y K G +  A + F++M  +N+++WNAMI G
Sbjct: 681 IKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITG 740

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCK 231
           Y ++    + L+L   M   GI PN  +   VL  CSH+  ++ G    + +FK   L  
Sbjct: 741 YSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVP 800

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKALRLF 287
            +     ++ +  + G L+ A +   E+    D + W  ++S    H     GE+A    
Sbjct: 801 KSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHL 860

Query: 288 DKMKDEGMKPDSITFVAL 305
            +++ E    DS T+V +
Sbjct: 861 LELEPE----DSATYVLI 874



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 75/172 (43%)

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           ++L+  M   G+R N  +   +L GC    SL    ++H  + KS    +   +  L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y + GD   A K+F E   + V +WN MI  +       +   LF +M  EG+ P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             +L AC    +    ++   S    YG  + P     ++DL  + G +  A
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 312/523 (59%), Gaps = 20/523 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F ++  KD  SW  MISG+ +     KA + +  M  +    + ++ ++++S     G L
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 118 DKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           DK + L + A        V+   ++I  Y K   +D A ++F  +P KN+++W ++I G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N  + + L   + MI L ++PN+ +L SVL  C+ + +L  GK++H    ++ L  D 
Sbjct: 474 RLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY +CG +E A   F   + KDV +WN +++GYAQ GKG  A+ LF KM + 
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + PD ITF +LL AC+ +G+V  G++YF+SM + + IA    HY  +VDLLGRAG+L +
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A + IKKMP  P PAI+G LL+ACR+++ ++L E AA ++F ++   + G Y+ L N+YA
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD-TKSVGYYILLCNLYA 710

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
              KWD+VAR+R  M+EN +   PG SW+EV   VH F +GD  HP++  I+  L+   +
Sbjct: 711 DSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYE 770

Query: 474 RMKLAGYVPDLEFALHAVGEEV---KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           +M+  G    L  +  +  +++   K ++   HSE+LAIAFGLI    GTPI V KNL +
Sbjct: 771 KMEATG----LSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYM 826

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD--YW 571
           C +CH   K+IS + +R I VRDT +FHHFKDG CSCGD  YW
Sbjct: 827 CENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 176/361 (48%), Gaps = 45/361 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           N ++S FV+  ++ +A  +F  M E++  SW+ ++ GY + G  D+A+ L+         
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 125 ------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                         +      V    A+I+ Y+K G +  A  +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD MP ++ ++WNAMI+GY EN    +GL+L  MM    + P+  +++SV+  C  L   
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           +LG++VH  V K+    + +    LI M+   G  ++A  +F +++ KD+V+W AMISGY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            ++G  EKA+  +  M+ EG+ PD IT  ++L AC   GL+D GI   +   +  G+ + 
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE-FADRTGLTSY 431

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
                 ++D+  +   + +A+++  ++P K   +    +L       RL+   F A+  F
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL-----RLNYRSFEALFFF 486

Query: 395 N 395
            
Sbjct: 487 Q 487



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 48/364 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIML-SC-------- 47
           M  +   +WN ++ G+AK  G   +A  L+ ++     +PDV ++  +L +C        
Sbjct: 155 MAERDLFSWNVLVGGYAKA-GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR 213

Query: 48  -------------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                    + +   D+ +A   F R+P +D  SWN MISG+ +
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFE 273

Query: 83  KKNMAKARDLFLAMPE----KNSVSWSAMISGYIECG--QLDKAVE--LFKVAPVKSVVA 134
                +   LF  M E     + ++ +++IS     G  +L + V   + K   V  V  
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSV 333

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             ++I  +   G  D AE +F +M  K+LV+W AMI+GY +N   E  ++   +M   G+
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +++SVL  C+ L  L  G  +H+   ++ L         LI MY KC  ++ A +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  I  K+V++W ++I G   + +  +AL  F +M    +KP+S+T V++L AC   G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGA 512

Query: 315 VDLG 318
           +  G
Sbjct: 513 LSCG 516


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/616 (35%), Positives = 338/616 (54%), Gaps = 52/616 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPD---VVSYNIMLSCI--LLNSDD 54
           K  ++WNS+L+ +  Q G   +A E   ++     QPD   +VS +  +  +  LLN  +
Sbjct: 329 KDYISWNSMLSCYV-QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE 387

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V  A+   QRL   DT   NT++  +++ + +  +  +F  M  K+ +SW+ +I+ Y + 
Sbjct: 388 V-HAYAIKQRLD-SDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQS 445

Query: 115 GQLDKAVELFKVAPVKSV--------------------------------------VAWT 136
            +  +A+E+F+ A  + +                                      V   
Sbjct: 446 SRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKN 505

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            +I  Y + G+V  + K+F+ +  K++VTW +MI  Y  +    + L L   M    ++P
Sbjct: 506 RIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQP 565

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           ++ +L S+L     LSSL  GK+VH  + +     +   ++ L+ MY  CG L  A K+F
Sbjct: 566 DSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVF 625

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ KD+V W AMI+    HG G++A+ LF +M   G+ PD ++F+ALL AC+H+ LV+
Sbjct: 626 NAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVN 685

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
            G  Y D M++ Y +    +HY C+VDLLGR+G+  EA + IK MP KP+  ++ +LL A
Sbjct: 686 EGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGA 745

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           CRVHK  +LA  AA  L  L P N  G YV ++N++A M KW++   +R  + E  + K 
Sbjct: 746 CRVHKNHELAVVAANRLLELEPDN-PGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKD 804

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPDLEFALHAVGEEV 495
           P  SWIE+G  VH F + D  H +   I+ KL E+ +R+ K  GY  D    LH V EE 
Sbjct: 805 PACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEE 864

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           K  +L  HSE+LAI+FGLI    G P+R+ KNLRVCGDCH  TK +S +  R+I+VRD  
Sbjct: 865 KVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDAN 924

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHF  G+CSCGD+W
Sbjct: 925 RFHHFSGGSCSCGDFW 940



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 169/351 (48%), Gaps = 45/351 (12%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           +D ASWN+MISG +Q     +A DLF  M       NS +   ++    E  QL+   EL
Sbjct: 229 RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGREL 288

Query: 124 FKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
              A +KS     +   A++  Y K G+VD A ++F E+  K+ ++WN+M++ YV+N   
Sbjct: 289 -HAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLY 347

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + ++ +  M+  G +P+ + + S+     HL  L  GK+VH    K  L  DT     L
Sbjct: 348 AEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTL 407

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           + MY KC  +E +  +F  ++ KD ++W  +I+ YAQ  +  +AL +F + + EG+K D 
Sbjct: 408 MDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDP 467

Query: 300 ITFVALLLACN----------------HAGLVDLGIQYFDSMVNDYGIAAKPDH------ 337
           +   ++L AC+                  GL+DL ++  + +++ YG   +  H      
Sbjct: 468 MMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVK--NRIIDIYGECGEVYHSLKMFE 525

Query: 338 ---------YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSA 376
                    +T M++    +G L EA+ L  +M     +P      ++L A
Sbjct: 526 TVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 171/371 (46%), Gaps = 45/371 (12%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNS-VSWSAM 107
           V +A   F+ +  KD  SWN+M+S +VQ    A+A +    M      P+    VS S+ 
Sbjct: 316 VDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375

Query: 108 IS--GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
           +   G++  G+   A  + +     + V  T M   YMK   ++ +  +FD M  K+ ++
Sbjct: 376 VGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLM-DMYMKCRYIEYSAHVFDRMRIKDHIS 434

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W  +I  Y ++S   + L++ R     GI+ +   + S+L  CS L ++ L KQ+H    
Sbjct: 435 WTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAI 494

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           ++ L  D      +I +Y +CG++  + K+F  +++KD+VTW +MI+ YA  G   +AL 
Sbjct: 495 RNGLL-DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALV 553

Query: 286 LFDKMKDEGMKPDSITFVALLLACNH--------------------------AGLVDL-- 317
           LF +M+   ++PDS+  V++L A                             + LVD+  
Sbjct: 554 LFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYS 613

Query: 318 GIQYFDSMVNDYGIAAKPDH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT 372
           G       +  +      D   +T M++  G  G   +A+DL K+M      P    F  
Sbjct: 614 GCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLA 673

Query: 373 LLSACRVHKRL 383
           LL AC  H +L
Sbjct: 674 LLYACS-HSKL 683



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL---KLLRMMIGL 192
           T ++  Y K G+V  A  LFD M ++ + +WNA+I  Y+ +  A + L   + +R+    
Sbjct: 99  TKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAAS 158

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ P+  +L+SVL         + G +VH L  K  L + T     LI+MY KCG L+ A
Sbjct: 159 GVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSA 218

Query: 253 CKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
            ++F L    +DV +WN+MISG  Q+G   +AL LF  M+   +  +S T V +L  C  
Sbjct: 219 MRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTE 278

Query: 312 AGLVDLG 318
              ++LG
Sbjct: 279 LAQLNLG 285


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 293/518 (56%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F+ +P  D    + MIS + Q     +A +LFL +       N  S S+++       QL
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           D   ++     K+     +    A++  Y K   +D + K+F  +   N V+WN ++ G+
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 440

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++   E+ L +   M    +     + SSVL  C+  +S++   Q+H  + KS    DT
Sbjct: 441 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 500

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI  Y KCG + DA K+F  +  +D+++WNA+ISGYA HG+   AL LFD+M   
Sbjct: 501 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 560

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++ + ITFVALL  C+  GLV+ G+  FDSM  D+GI    +HYTC+V LLGRAG+L +
Sbjct: 561 NVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLND 620

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  I  +P  P   ++  LLS+C +HK + L  F+A  +  + P +    YV L+N+YA
Sbjct: 621 ALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET-TYVLLSNMYA 679

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A    D VA +R SM+   V K+PG SW+E+   +H F  G   HP++  I+  L+ L  
Sbjct: 680 AAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNL 739

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +    GY+PD+   LH V +E K ++L  HSE+LA+A+GL+  P G PIR+ KNLR C D
Sbjct: 740 KTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLD 799

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A   IS I KREIIVRD  RFHHF+DG CSCGDYW
Sbjct: 800 CHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 39/292 (13%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N +++ + +   +A AR LF  MPE+N VS+  ++  + + G  + A  LF+        
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 126 --------------------VAPVKSVVAW-----------TAMISGYMKFGKVDLAEKL 154
                               +A      AW           + +I  Y     V  AE +
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           F+ +  K+ V W AM++ Y EN   E+  ++   M   G +PN  +L+SVL     L S+
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSV 279

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
            LGK +H    K+    +      L+ MY KCGD++DA   F  I   DV+  + MIS Y
Sbjct: 280 VLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRY 339

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           AQ  + E+A  LF ++    + P+  +  ++L AC +   +D G Q  +  +
Sbjct: 340 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAI 391



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 183/435 (42%), Gaps = 92/435 (21%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           +VL     + G L  A+ LFD++P+ ++VS+ + L        D  AA   F+RL  +  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSF-VTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 69  --------------------------DTASW------NTMI-SGFVQKKNM----AKARD 91
                                      + +W      N  + SG +   ++    + A  
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH 218

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA 137
           +F  +  K++V W+AM+S Y E    + A  +F                + +K+ V   +
Sbjct: 219 VFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPS 278

Query: 138 MISG-------------------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           ++ G                         Y K G +  A   F+ +P  +++  + MI+ 
Sbjct: 279 VVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISR 338

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +++  E   +L   ++   + PN  SLSSVL  C+++  L  GKQ+H    K     D
Sbjct: 339 YAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESD 398

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 L+  Y KC D++ + K+F  ++  + V+WN ++ G++Q G GE+AL +F +M+ 
Sbjct: 399 LFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQA 458

Query: 293 EGMKPDSITFVALLLAC------NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
             M    +T+ ++L AC       HAG +   I+   +  ND  I         ++D   
Sbjct: 459 AQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK-STFNNDTVIG------NSLIDTYA 511

Query: 347 RAGKLVEAVDLIKKM 361
           + G + +A+ + + +
Sbjct: 512 KCGYIRDALKVFQHL 526



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 17/277 (6%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
           +D+ ++   F  L   +  SWNT++ GF Q     +A  +F  M         V++S+++
Sbjct: 413 NDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVL 472

Query: 109 ------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
                 +     GQ+  ++E  K       V   ++I  Y K G +  A K+F  +  ++
Sbjct: 473 RACASTASIRHAGQIHCSIE--KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERD 530

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-H 221
           +++WNA+I+GY  +  A D L+L   M    +  N  +  ++L  CS    +  G  +  
Sbjct: 531 IISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFD 590

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
            +     +       T ++ +  + G L DA +   +I      + W A++S    H   
Sbjct: 591 SMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKN- 649

Query: 281 EKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVD 316
             AL  F   K   ++P D  T+V L      AG +D
Sbjct: 650 -VALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLD 685



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 92/216 (42%), Gaps = 49/216 (22%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCI------------- 48
           V+WN+++ GF+ Q G  ++A  +F      ++P   V   +++ +C              
Sbjct: 431 VSWNTIVVGFS-QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHC 489

Query: 49  -----LLNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
                  N+D V+                A   FQ L  +D  SWN +ISG+      A 
Sbjct: 490 SIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAAD 549

Query: 89  ARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK-----SVVAWTAMI 139
           A +LF  M     E N +++ A++S     G ++  + LF    +      S+  +T ++
Sbjct: 550 ALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIV 609

Query: 140 SGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYV 174
               + G+++ A +   ++P+  + + W A+++  +
Sbjct: 610 RLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCI 645


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 286/480 (59%), Gaps = 3/480 (0%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+WN +++G+     ++  A++ FD++P+ +VVS+  M+ C  + + D+  A   F 
Sbjct: 165 KDIVSWNMMISGYGNN-DRVDIARKFFDRMPERNVVSWTSMI-CGYVKAGDMAEAQVLFD 222

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P+KD ASWN M+SG++   +   AR +F  MP  ++ SW+ MISG+ + G+L+ A + 
Sbjct: 223 SMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDF 282

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
           F   P K+V++W  M+ GY+K G  + A  LFD+MP KNLVTW+ MI GY  N      L
Sbjct: 283 FDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKAL 342

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           +L        I+P+ + +  ++  CS L  +   + +        L  D    T LI MY
Sbjct: 343 ELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMY 402

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG +E A ++F     KD++ ++ MI+  A HG G  A+ LFDKM+   +KPDS+TF+
Sbjct: 403 AKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFL 462

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
            +L ACNH GLVD G +YF  M  ++GI     HY C+VDLLGR G L EA +LI+ MP 
Sbjct: 463 GVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPI 522

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
            P   ++G LL+ACRVH  + LAE AA  LF + P N +G Y+ L+NIYAA  +W  VA+
Sbjct: 523 APHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDN-SGNYILLSNIYAAAGRWGSVAK 581

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  ++E+ V K  G SWIE+  VVHEF  GD  H +  SI   L  L + MKL+GY+ D
Sbjct: 582 VRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLID 641



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 187/418 (44%), Gaps = 92/418 (22%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
           A   F  +   +   W ++I G+V+ +   +A  LF+ M  +                  
Sbjct: 54  AHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALAR 113

Query: 100 ---------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                + +  ++++  ++ C ++D A + F     K +V+W  M
Sbjct: 114 LTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMM 173

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           ISGY    +VD+A K FD MP +N+V+W +MI GYV+   A D  +   +   + ++  A
Sbjct: 174 ISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVK---AGDMAEAQVLFDSMPVKDLA 230

Query: 199 SSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDA----- 252
           S   +V++       + +G  V+ +++F      DT +   +IS +CK G+LE A     
Sbjct: 231 S--WNVMVS----GYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFD 284

Query: 253 ---------------------------CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
                                      C LF ++  K++VTW+ MI GYA++G+  KAL 
Sbjct: 285 RMPNKNVISWGIMLDGYIKNGDTNGARC-LFDQMPMKNLVTWSTMIGGYARNGQPLKALE 343

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY---GIAAKPDHYTCMV 342
           LF++ K++ +KPD    + ++ AC+  G++D      +S++++Y    + +    +T ++
Sbjct: 344 LFERFKEQDIKPDETFILGIISACSQLGIIDAA----ESIIHNYVGPSLLSDLRVFTSLI 399

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
           D+  + G + +A+ +  +M        + T+++A   H   R  +  F  M   N+ P
Sbjct: 400 DMYAKCGSIEKALQMF-EMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKP 456



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 139/287 (48%), Gaps = 12/287 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +  T +WN +++GF K  G+L+ A++ FD++P  +V+S+ IML   + N  D   A  
Sbjct: 255 MPIHDTGSWNIMISGFCKA-GELESAKDFFDRMPNKNVISWGIMLDGYIKNG-DTNGARC 312

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQL-- 117
            F ++P+K+  +W+TMI G+ +     KA +LF    E++       I G I  C QL  
Sbjct: 313 LFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGI 372

Query: 118 -DKAVELFK--VAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            D A  +    V P  +  +  +T++I  Y K G ++ A ++F+    K+L+ ++ MIA 
Sbjct: 373 IDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAA 432

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCK 231
              +    D + L   M    I+P++ +   VL  C+H   +  G++   Q+  +  +  
Sbjct: 433 LANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQP 492

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQH 277
                  ++ +  + G LE+A  L   +      V W A+++    H
Sbjct: 493 SEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVH 539



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 30/249 (12%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y +FG  D A K+FDE+   N   W ++I GYVEN   ++   L   M    I     ++
Sbjct: 45  YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           SSVL   + L+  + G+ V+  V K     D      ++ ++ +C  ++ A + F E+  
Sbjct: 105 SSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCE 164

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
           KD+V+WN MISGY  + + + A + FD+M +  +    +++ +++     AG +      
Sbjct: 165 KDIVSWNMMISGYGNNDRVDIARKFFDRMPERNV----VSWTSMICGYVKAGDMAEAQVL 220

Query: 322 FDSM---------------------VNDYGIAAK-PDH----YTCMVDLLGRAGKLVEAV 355
           FDSM                     VN   I  K P H    +  M+    +AG+L  A 
Sbjct: 221 FDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAK 280

Query: 356 DLIKKMPFK 364
           D   +MP K
Sbjct: 281 DFFDRMPNK 289



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 133/306 (43%), Gaps = 36/306 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +K  V W++++ G+A+    LK A ELF++  + D+            +   ++    
Sbjct: 317 MPMKNLVTWSTMIGGYARNGQPLK-ALELFERFKEQDIKP----------DETFILGIIS 365

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              +L I D A   ++I  +V    ++  R             ++++I  Y +CG ++KA
Sbjct: 366 ACSQLGIIDAAE--SIIHNYVGPSLLSDLR------------VFTSLIDMYAKCGSIEKA 411

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVEN 176
           +++F++A  K ++ ++ MI+     G    A  LFD+M   N+    VT+  ++      
Sbjct: 412 LQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHG 471

Query: 177 SWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT- 234
              ++G K  + M    GI+P+    + V+     +  L+   + + L+   P+   +  
Sbjct: 472 GLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLE---EAYNLIRNMPIAPHSVV 528

Query: 235 --ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
             AL     ++C     E A     +I+  +   +  + + YA  G+     ++  K+++
Sbjct: 529 WGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIRE 588

Query: 293 EGMKPD 298
             ++ +
Sbjct: 589 HRVRKN 594



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 204 VLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++  C  L SL   K +H +L+ +S +      +  L+ +Y + G  + A K+F EI + 
Sbjct: 8   IIHNCKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL-GIQY 321
           +   W ++I GY ++ + ++A  LF +M+ E +   + T  ++L A   A L    G Q 
Sbjct: 65  NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKAL--ARLTRFKGGQA 122

Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
               V  YG A        ++DL  R  K+  A     +M  K   + +  ++S    + 
Sbjct: 123 VYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVS-WNMMISGYGNND 181

Query: 382 RLDLAE 387
           R+D+A 
Sbjct: 182 RVDIAR 187


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/563 (38%), Positives = 328/563 (58%), Gaps = 10/563 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           ++VK  V W  +++G AK  G L D Q L  + P  DV+S+  +++       + + V  
Sbjct: 168 IHVKDAVAWTMLISGLAKM-GMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGC 226

Query: 59  FDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGYIE 113
           F       I  D  +   ++S   + K++   R L L + EK   +      A+I  Y +
Sbjct: 227 FKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAK 286

Query: 114 CGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
           CG    A ++F  +       +W A+I GY K G VD+A  LFDEM  ++++T+N+M+ G
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y+ +    + L L   M    +R +  ++ ++L  C+ L +LQ G+ +H  + +  +  D
Sbjct: 347 YIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEAD 406

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
               T L+ MY KCG +++A  +F  + ++DV TW AMI+G A +G G+ AL  F +M+ 
Sbjct: 407 IYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRC 466

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           +G +P+S++++A+L AC+H+ L++ G  YFD M   Y I  + +HY CM+DLLGR+G L 
Sbjct: 467 DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA+DL+K MP +P   I+ ++LSACRVHK +DLA+ AA +L  L P +  G YVQL NIY
Sbjct: 527 EAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEP-DEDGVYVQLYNIY 585

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
              ++W++ ++IR+ M+E  V K  GYS I V   VH+F   D+ HP ++ I   L+E+ 
Sbjct: 586 IDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEIS 645

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            R+K  GY P        V EE KEQ LL HSEKLAIAFGLI +    P+ + KNLRVC 
Sbjct: 646 HRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCE 705

Query: 533 DCHRATKYISAIEKREIIVRDTT 555
           DCH A K IS +  REIIVRD +
Sbjct: 706 DCHSAIKLISRLWNREIIVRDRS 728



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 172/396 (43%), Gaps = 46/396 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-- 67
           NS++         L+ A  LFD++P P    ++  L        D    F  F+R+    
Sbjct: 40  NSLVNCLEPHPLHLRYALHLFDRMP-PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAG 98

Query: 68  --KDTASWNTMISGFVQKK--------NMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
              D  +++ +                 M  A  L   +P       +++I  YI  G  
Sbjct: 99  VRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLA 158

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
             A   F    VK  VAWT +ISG  K G +   + L  + P +++++W ++IA Y   +
Sbjct: 159 ADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRAN 218

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
            A + +   + M+  GI P+  ++ +VL  C+ L  L+LG+ +H LV +  +      + 
Sbjct: 219 RAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVV 278

Query: 238 PLISMYCKCGDLEDA-----------------------CK---------LFLEIQRKDVV 265
            LI MY KCGD   A                       CK         LF E++ +D++
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDII 338

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           T+N+M++GY   G+  +AL LF  M+   ++ D+ T V LL AC   G +  G +   + 
Sbjct: 339 TFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQG-RALHAC 397

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +    + A     T ++D+  + G++ EA  + ++M
Sbjct: 398 IEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRM 433


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 344/617 (55%), Gaps = 51/617 (8%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSY-NIMLSCILLN---S 52
            M  + T++WNSV++G +   G   +A ELF ++     + D V+  +++ +C       +
Sbjct: 478  MPRQDTISWNSVISGCSSN-GLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFA 536

Query: 53   DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              VV  +     L I +T+  N ++  +    +      +F +M +KN VSW+AMI+ Y+
Sbjct: 537  GRVVHGYSVKTGL-IGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYM 595

Query: 113  ECGQLDKAV-------------ELFKVAPV-------------KSVVAWT---------- 136
              G  DK               ++F V                KSV  +T          
Sbjct: 596  RAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLP 655

Query: 137  ---AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
               A++  Y+K   V+ A  +FD +  K++++WN +I GY  N++  +   L   M+ L 
Sbjct: 656  VANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDML-LQ 714

Query: 194  IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             RPNA +++ +L   + +SSL+ G+++H    +    +D+ A   L+ MY KCG L  A 
Sbjct: 715  FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVAR 774

Query: 254  KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
             LF  + +K++++W  MI+GY  HG G+ A+ LF++M+  G++PD+ +F A+L AC H+G
Sbjct: 775  VLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSG 834

Query: 314  LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
            L   G ++F +M  +Y I  K  HYTC+VDLL R G L EA++ I+ MP +P  +I+ +L
Sbjct: 835  LAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSL 894

Query: 374  LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
            L  CR+HK + LAE  A  +F L P N  G YV LANIYA  ++W+ V +++  +    +
Sbjct: 895  LHGCRIHKNVKLAEKVADKVFKLEPEN-TGYYVLLANIYAEAERWEAVKKLKNKIGGRGL 953

Query: 434  VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
             +  GYSWIEV + VH F + +R HP+   I E L ++ +RM+  G+ P  ++AL    +
Sbjct: 954  RENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADD 1013

Query: 494  EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
             V ++ L  HS KLA+AFG++ +P G PIRV KN +VC  CH A K+IS +  REII+RD
Sbjct: 1014 AVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRD 1073

Query: 554  TTRFHHFKDGTCSCGDY 570
            ++RFH F+ G CSC  Y
Sbjct: 1074 SSRFHRFEGGRCSCRGY 1090



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 221/519 (42%), Gaps = 119/519 (22%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNS--VSWSAMISGYIECGQLDKAVELFK------VA 127
           ++  +++  ++ +AR +F  MP + +    W++++S Y + G   +AV LF+      V+
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 128 P-----------VKSVVAWT----------------------AMISGYMKFGKVDLAEKL 154
           P           V S+ + T                      A+I+ Y + G+++ A ++
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD M  ++ ++WN+MI G   N W    + L   M   G   ++ ++ SVL  C+ L   
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 215 QLGKQVHQLVFKSPL----------CKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-D 263
            +GK VH    KS L            D    + L+ MY KCGD+  A ++F  +  K +
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGN 381

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-----LACNHAGLVDLG 318
           V  WN ++ GYA+ G+ E++L LF +M + G+ PD      LL     L+C   GLV  G
Sbjct: 382 VHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG 441

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
                  +   G  A+      ++    ++  + +AV +  +MP +     + +++S C 
Sbjct: 442 ------YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCS 494

Query: 379 VH----KRLDL--------AEFAAMNLFNLNPANAAGCY-------------------VQ 407
            +    + ++L         E  ++ L ++ PA A   Y                     
Sbjct: 495 SNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETS 554

Query: 408 LAN----IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
           LAN    +Y+    W    +I  SM + NVV     SW  +  +    R+G         
Sbjct: 555 LANALLDMYSNCSDWQSTNQIFRSMGQKNVV-----SWTAM--ITSYMRAG--------- 598

Query: 464 IHEKLKELEKRMKLAGYVPD---LEFALHA-VGEEVKEQ 498
           + +K+  L + M L G  PD   +  ALHA  G+E  +Q
Sbjct: 599 LFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQ 637



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 168/355 (47%), Gaps = 49/355 (13%)

Query: 1   MNVKTTVN-WNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI--LLNSD 53
           M+ K  V+ WN ++ G+AK  G+ +++  LF ++ +    PD  + + +L CI  L  + 
Sbjct: 376 MSSKGNVHVWNLIMGGYAKV-GEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCAR 434

Query: 54  DVVAAFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           D + A  +  +L      A  N +IS + +   +  A  +F  MP ++++SW+++ISG  
Sbjct: 435 DGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCS 494

Query: 113 ECGQLDKAVELF----------------KVAPV-KSVVAWTA--MISGYMK----FGKVD 149
             G   +A+ELF                 V P       W A  ++ GY       G+  
Sbjct: 495 SNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETS 554

Query: 150 LAEKLFD----------------EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           LA  L D                 M  KN+V+W AMI  Y+     +    LL+ M+  G
Sbjct: 555 LANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDG 614

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           IRP+  +++S L   +   SL+ GK VH    ++ + K       L+ MY KC ++E+A 
Sbjct: 615 IRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEAR 674

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
            +F  +  KDV++WN +I GY+++    ++  LF  M  +  +P+++T   +L A
Sbjct: 675 LIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPA 728



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 164/360 (45%), Gaps = 62/360 (17%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCIL----LNSDDVVAAFD 60
           W S+++ +AK  G  ++A  LF ++      PD  + + +L C+     L   +V+    
Sbjct: 172 WTSLMSAYAKA-GDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVI--HG 228

Query: 61  FFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             ++L + +  A  N +I+ + +   M  A  +F +M  ++++SW++MI G    G    
Sbjct: 229 LLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGT 288

Query: 120 AVELFK----------------VAP------------------VKSVVAW---------- 135
           AV+LF                 V P                  VKS + W          
Sbjct: 289 AVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGID 348

Query: 136 -----TAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMM 189
                + ++  Y+K G +  A ++FD M +K N+  WN ++ GY +    E+ L L   M
Sbjct: 349 DAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM 408

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
             LGI P+  ++S +L   + LS  + G   H  + K            LIS Y K   +
Sbjct: 409 HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMI 468

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
            DA  +F  + R+D ++WN++ISG + +G   +A+ LF +M  +G + DS+T +++L AC
Sbjct: 469 GDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPAC 528



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 160/365 (43%), Gaps = 58/365 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCILLNSDDV 55
           M+ +  ++WNS++ G     G    A +LF K+         V   +++ +C  L    +
Sbjct: 265 MHPRDAISWNSMIGG-CFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLI 323

Query: 56  VAAFDFFQ------------RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS 103
             A   +             +  I D A  + ++  +V+  +MA AR +F AM  K +V 
Sbjct: 324 GKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVH 383

Query: 104 -WSAMISGYIECGQLDKAVELF------KVAPVKSVVAW--------------------- 135
            W+ ++ GY + G+ ++++ LF       +AP +  ++                      
Sbjct: 384 VWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYI 443

Query: 136 ------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
                        A+IS Y K   +  A  +F+ MP ++ ++WN++I+G   N    + +
Sbjct: 444 VKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAI 503

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
           +L   M   G   ++ +L SVL  C+       G+ VH    K+ L  +T+    L+ MY
Sbjct: 504 ELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMY 563

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
             C D +   ++F  + +K+VV+W AMI+ Y + G  +K   L  +M  +G++PD     
Sbjct: 564 SNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVT 623

Query: 304 ALLLA 308
           + L A
Sbjct: 624 SALHA 628


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/578 (35%), Positives = 331/578 (57%), Gaps = 39/578 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W ++++G+ K   K+  A++LFDK+ +  +VS+  M+S   +       + + FQ++ 
Sbjct: 303 VLWTTLVSGYVKS-NKIDKARQLFDKMNERSLVSWTTMMSG-YVQGGYYCESLELFQQMR 360

Query: 67  ----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG---------YIE 113
               I D  +  T++S  V  ++    R +   +     V++  ++ G         Y +
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFI-----VTYGMLVDGFLGNALLDLYAK 415

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           CG+LD+A+  F+  P KS  +W +M+ G+ + G VD A   F+++P K++V+WN M+  Y
Sbjct: 416 CGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAY 475

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V++    +  ++   M    ++P+ ++L S+L  C+ + +L  G  V+  + K+ +  D 
Sbjct: 476 VKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDA 535

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T LI MY KCG +E A ++F +I  K+V  W AM++ YA  G+  +A+ L+ +M++ 
Sbjct: 536 MLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEER 595

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G+KPD +TF+ALL AC+H GLVD G +YF+ + + Y I     HY CMVDLLGR G L E
Sbjct: 596 GVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEE 655

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
            V  I++MP +P  +I+ +L+ ACR H  ++LAE A   L  ++P N  G +V L+NIYA
Sbjct: 656 TVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTN-NGAHVLLSNIYA 714

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
              +WDDV+++R  + E  V K PG++ IE   VVHEF + + V  +++ +   L+++E+
Sbjct: 715 DAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADILCM---LQDIER 771

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           R+ +   + D                   HSE+LA+AFGLI     +PIRV  ++R+C D
Sbjct: 772 RLLVKQELSDTTSQ---------------HSERLAVAFGLINNQENSPIRVVNSVRMCRD 816

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   K IS    REI++RD  RFH F DG CSC DYW
Sbjct: 817 CHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 218/482 (45%), Gaps = 89/482 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+ L G   + GKLK+  +LF+K+   DV+S+N M+SC +L       A D F  + +  
Sbjct: 171 NNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGM-YREALDLFDEMLVSG 229

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV 121
              D  +  +++S   + K++   + L L + +          + ++  Y +CG++D+A 
Sbjct: 230 VLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAH 289

Query: 122 ELFKVAPVKSV--VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
            L        V  V WT ++SGY+K  K+D A +LFD+M  ++LV+W  M++GYV+  + 
Sbjct: 290 GLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYY 349

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + L+L + M    + P+  +L +VL  C HL    LG+ VH  +    +  D      L
Sbjct: 350 CESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNAL 409

Query: 240 ISMYCKCGDLEDA--------CK-----------------------LFLEIQRKDVVTWN 268
           + +Y KCG L++A        CK                        F +I  KD+V+WN
Sbjct: 410 LDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWN 469

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI---QYFDSM 325
            M++ Y +H    ++  +F KM+   +KPD  T ++LL +C   G ++ GI    Y +  
Sbjct: 470 TMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEK- 528

Query: 326 VNDYGIAAKPDHYTCMVDLLGRA-------------------------------GKLVEA 354
            N+ GI A     T ++D+ G+                                G+ +EA
Sbjct: 529 -NEIGIDAMLG--TALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEA 585

Query: 355 VDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMN----LFNLNPA-NAAGCYV 406
           +DL  +M     KP    F  LL+AC  H  L    +   N     +N+ P  +  GC V
Sbjct: 586 IDLYLEMEERGVKPDHVTFIALLAACS-HGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMV 644

Query: 407 QL 408
            L
Sbjct: 645 DL 646



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 110/218 (50%), Gaps = 1/218 (0%)

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
           +    +D A ++         + WN ++   ++    ++ L+    M+  G+  + S+  
Sbjct: 78  LSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFH 137

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
            ++  C     ++LG +VH  + K    ++ +    L+ +Y KCG L++ C+LF ++  +
Sbjct: 138 FLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHR 197

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           DV++WN MIS Y   G   +AL LFD+M   G+ PD IT V+L+  C     +++G +  
Sbjct: 198 DVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLH 257

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
             +V D  +  +     C+VD+  + GK+ EA  L+ +
Sbjct: 258 LYIV-DNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSR 294



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 130/307 (42%), Gaps = 50/307 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K+  +WNS+L GF +  G +  A++ F+KIP+ D+VS+N M++   +  D    +F+ F 
Sbjct: 432 KSAASWNSMLDGFCRS-GGVDKARDFFNKIPEKDIVSWNTMVNA-YVKHDLFNESFEIFC 489

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFL---AMPEKNSVSWSAM-----ISGYIECG 115
           ++   +     T +   +       A +  +      EKN +   AM     I  Y +CG
Sbjct: 490 KMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCG 549

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIA 171
            ++ A E+F     K+V  WTAM++ Y   G+   A  L+ EM  + +    VT+ A++A
Sbjct: 550 CVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLA 609

Query: 172 GYVENSWAEDGLKLLR-----------------MMIGLG----------------IRPNA 198
                   ++G K                    M+  LG                I P+ 
Sbjct: 610 ACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDV 669

Query: 199 SSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           S  SS++  C    +++L +Q   QL+   P   +  A   L ++Y   G  +D  K+  
Sbjct: 670 SIWSSLMRACRSHHNVELAEQAFKQLIEIDP--TNNGAHVLLSNIYADAGRWDDVSKVRT 727

Query: 258 EIQRKDV 264
           ++    V
Sbjct: 728 KLHETGV 734


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 318/556 (57%), Gaps = 34/556 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A+ LF  +P PD   ++ +L         V + F F          S +T++  F
Sbjct: 73  GSITYARRLFPTVPNPDSFLFDSLLK--------VTSKFGF----------SIDTVL--F 112

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWT 136
            +       R LF   P+ N  +++++I    +   L    E+     V      +    
Sbjct: 113 YR-------RMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQA 164

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           A+I+ Y K   + +A+K+FD MP + ++ WN++I+GY +N   ++ + L  +M+  G +P
Sbjct: 165 ALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQP 224

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           +++++ S+L  CS L +L  G  +H     +    +    T LI+MY +CG++  A ++F
Sbjct: 225 DSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 284

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             ++ ++VVTW AMISGY  HG G +A+ LF +M+  G +P++ITFVA+L AC H+GL+D
Sbjct: 285 DSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLID 344

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK-MPFKPQPAIFGTLLS 375
            G + F SM   YG+    +H  CMVD+ GRAG L +A   IKK +P +P PA++ ++L 
Sbjct: 345 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 404

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR+H+  DL    A ++ ++ P N  G YV L+NIYA   + D V  +R  M    + K
Sbjct: 405 ACRMHRNFDLGVKVAEHVLSVEPENP-GHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKK 463

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
             GYS IE+    + F  GD+ HP+  +I+  L EL  R   +GYVP  E  +H + EE 
Sbjct: 464 QVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEE 523

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           ++  L +HSEKLA+AFGL+K   G  IR+ KNLR+C DCH A K+IS I  REIIVRD  
Sbjct: 524 RDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKF 583

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHFKDG+CSC DYW
Sbjct: 584 RFHHFKDGSCSCLDYW 599



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 146/300 (48%), Gaps = 12/300 (4%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T +IS     G +  A +LF  +P  +   +++++    +  ++ D +   R M+  G  
Sbjct: 63  TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 122

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  + +SV+  C+ LS+L+LGK++H  V       D      LI++Y K  D++ A K+
Sbjct: 123 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 182

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  + ++ ++ WN++ISGY Q+G  ++++ LF  M + G +PDS T V+LL +C+  G +
Sbjct: 183 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGAL 242

Query: 316 DLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           D G     Y D    D  +       T ++++  R G + +A ++   M  +     +  
Sbjct: 243 DFGCWLHDYADGNGFDLNVVLG----TSLINMYTRCGNVSKAREVFDSMKER-NVVTWTA 297

Query: 373 LLSACRVH--KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
           ++S   +H   R  +  F  M  +   P N    +V + +  A     DD  R+  SMKE
Sbjct: 298 MISGYGMHGYGRQAMELFTEMRAYGPRPNNIT--FVAVLSACAHSGLIDDGRRVFSSMKE 355



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 26/176 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +T + WNS+++G+  Q G  +++  LF  +     QPD  +        LL+S   +
Sbjct: 186 MPQRTIIAWNSLISGY-DQNGLPQESIGLFHLMMESGFQPDSATI-----VSLLSSCSQL 239

Query: 57  AAFDFFQRLPIKDTASWN----------TMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
            A DF   L   D A  N          ++I+ + +  N++KAR++F +M E+N V+W+A
Sbjct: 240 GALDFGCWL--HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTA 297

Query: 107 MISGYIECGQLDKAVELFK----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           MISGY   G   +A+ELF       P  + + + A++S     G +D   ++F  M
Sbjct: 298 MISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSM 353



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 55/261 (21%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           +QVH  +  S L +  + LT LIS+ C  G +  A +LF  +   D   +++++   ++ 
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPD 336
           G     +  + +M   G    + TF +++ AC     + LG + +   MV  YG     D
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYG----SD 159

Query: 337 HYT--CMVDLLGRAGKLVEAVDLIKKMP-------------------------------- 362
            Y    ++ L  +A  +  A  +   MP                                
Sbjct: 160 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 219

Query: 363 --FKPQPAIFGTLLSACRVHKRLD----LAEFAAMNLFNLN---PANAAGCYVQLANIYA 413
             F+P  A   +LLS+C     LD    L ++A  N F+LN     +    Y +  N+  
Sbjct: 220 SGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSK 279

Query: 414 AMKKWDDVARIRLSMKENNVV 434
           A + +D       SMKE NVV
Sbjct: 280 AREVFD-------SMKERNVV 293


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 303/528 (57%), Gaps = 42/528 (7%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP--------VK 130
           +M+ AR LF  M +     W+ ++ GY++ G  DKAV ++       V P        +K
Sbjct: 84  DMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIK 143

Query: 131 SVVAWTAMISG-------------------------YMKFGKVDLAEKLFDEMPTKNLVT 165
           +      + +G                         Y+KFG++  AE LF  M  ++LV 
Sbjct: 144 ACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVA 203

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNA+IA  V+  ++   L+  R M   GI+P++ ++ S L  C HL  L+ G+++++   
Sbjct: 204 WNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAR 263

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +  +  +       + M  KCGD++ A  LF E+ +++V++W+ +I GYA +G+ EKAL 
Sbjct: 264 EEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALA 323

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV--NDYGIAAKPDHYTCMVD 343
           LF +MK++G++P+ +TF+A+L AC+H G V+ G QYF+ M   +D  I  + +HY CMVD
Sbjct: 324 LFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVD 383

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGR+G L EA + IK MP +  P I+G LL AC +H+ + L +  A  LF L P   A 
Sbjct: 384 LLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAP-EIAS 442

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            +V L+N+YAA  +W  V ++R  MK+    K+  YS +E    +H    GD+ HP+  S
Sbjct: 443 YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSAS 502

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I  KL++L K+MK  GY+P+ +   H V +E KE  L  HSEKLAIAF LI      PIR
Sbjct: 503 ILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIR 562

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           V KNLR+CGDCH   K +S I  REII+RD  RFHHFK+G CSC D+W
Sbjct: 563 VMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 1/217 (0%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G +  A +LFDEM       WN ++ GYV+N   +  + +   M  LG+RP+  +   V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+ L+ L  G  +H  V K  L       T L+ MY K G+L  A  LF  +  +D+V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
            WNA+I+   Q G   KAL+ F +M   G+KPDS+T V+ L AC H G ++ G + ++  
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE-F 261

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             + GI +    +   +D+  + G + +A++L  +MP
Sbjct: 262 AREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP 298



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 114/273 (41%), Gaps = 52/273 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-CILLN-SDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G+L  A+ LF  + + D+V++N +++ C+    S   + +F       IK D+ +  + +
Sbjct: 184 GELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSAL 243

Query: 78  SGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S       +    +++    E+    N +  +A +    +CG +DKA+ LF   P ++V+
Sbjct: 244 SACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVI 303

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           +W+ +I GY   G+ + A  LF  M  +                               G
Sbjct: 304 SWSTVIGGYAVNGESEKALALFSRMKNQ-------------------------------G 332

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKC 246
           ++PN  +  +VL  CSH   +  G Q    + +S    D   + P       ++ +  + 
Sbjct: 333 VQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQS----DDKNIQPRKEHYACMVDLLGRS 388

Query: 247 GDLEDACKLFLEIQ--RKDVVTWNAMISGYAQH 277
           G LE+A   F++I     D   W A++   A H
Sbjct: 389 GHLEEAYN-FIKIMPIEADPGIWGALLGACAIH 420


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
            A    +RLP  D  SW  MI+G+VQ    ++A  LF  M  +    +++ +++ IS    
Sbjct: 517  ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 114  CGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
               L +  ++   +      A      A+IS Y + G++  A   F+++  KN ++WN++
Sbjct: 577  IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 170  IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
            ++G  ++ + E+ L++   M+      N  +  S +   + L++++ G+Q+H +V K+  
Sbjct: 637  VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY 696

Query: 230  CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
              +      LIS+Y K G + DA + F ++  ++V++WNAMI+GY+QHG G +ALRLF++
Sbjct: 697  DSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 290  MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
            MK  G+ P+ +TFV +L AC+H GLV  G+ YF+SM   + +  K +HY C+VDLLGRAG
Sbjct: 757  MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 350  KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            +L  A++ IK+MP      I+ TLLSAC +HK +++ E AA +L  L P ++A  YV ++
Sbjct: 817  QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA-TYVLIS 875

Query: 410  NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
            NIYA  ++W      R  MK+  V K PG SWIEV   VH F +GD++HP    I+E + 
Sbjct: 876  NIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIG 935

Query: 470  ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
             L +R    GYV D    L+   +  K+ +   HSEKLAIAFGL+ +    PIRV KNLR
Sbjct: 936  HLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLR 995

Query: 530  VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            VC DCH   KY+S I  R IIVRD  RFHHF  G CSC D+W
Sbjct: 996  VCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 9/318 (2%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAM 107
           S  +++A   F  +  +D  S+N++ISG VQ+    +A +LF  M       + ++ +++
Sbjct: 309 SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASL 368

Query: 108 ISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +S     G L K ++L     K      ++   +++  Y K   V+ A K F    T+N+
Sbjct: 369 LSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENI 428

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V WN M+  Y +     D  ++ R M   G+ PN  +  S+L  C+ L +L LG+Q+H  
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTH 488

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V K+    +    + LI MY K G L  A ++   +   DVV+W AMI+GY QH    +A
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           L+LF++M+  G++ D+I F + + AC     +  G Q   +     G  A       ++ 
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALIS 607

Query: 344 LLGRAGKLVEAVDLIKKM 361
           L  R G++ EA    +K+
Sbjct: 608 LYARCGRIQEAYLAFEKI 625



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 186/400 (46%), Gaps = 48/400 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC--------- 47
           MN +  V++NS+++G  +Q G    A ELF K+ +    PD ++   +LS          
Sbjct: 322 MNSRDGVSYNSLISGLVQQ-GFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 48  ----------------ILLNSD---------DVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                           I+L            DV  A  FF     ++   WN M+  + Q
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQ 440

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL----DKAVELFKVAPVKSVVA 134
             N++ + ++F  M  +    N  ++ +++      G L         + K     +V  
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            + +I  Y K+G++ LA ++   +P  ++V+W AMIAGYV++    + L+L   M   GI
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGI 560

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           + +    +S +  C+ + +L+ G+Q+H   + +    D +    LIS+Y +CG +++A  
Sbjct: 561 QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYL 620

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
            F +I  K+ ++WN+++SG AQ G  E+AL++F +M     + +  T+ + + A      
Sbjct: 621 AFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLAN 680

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           +  G Q   SMV   G  ++ +    ++ L  ++G + +A
Sbjct: 681 IKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 9/276 (3%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D   A   F     +   SWN MI  FV +K+  +   LF  M  +         +G ++
Sbjct: 108 DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK 167

Query: 114 -CGQLDKAVELFKVAPVK--------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
            C   D A    K    +        S +    +I  Y K G ++ A+K+F+ +  K++V
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TW AMI+G  +N   E+ + L   M    I P    LSSVL   + +   +LG+Q+H LV
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            K     +T     L+++Y +   L  A ++F  +  +D V++N++ISG  Q G  ++AL
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            LF KM+ + +KPD IT  +LL AC   G +  G+Q
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
           +++  Y + G    A K+FDE   +++ +WN MI  +V          L R M+  GI P
Sbjct: 98  SLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITP 157

Query: 197 NASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           N  + + VL  C     +    KQVH   F             LI +Y K G +E A K+
Sbjct: 158 NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  I  KD+VTW AMISG +Q+G  E+A+ LF  M    + P      ++L A     L 
Sbjct: 218 FNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 361
           +LG Q    +V  +G  ++   Y C  +V L  R+ KL+ A  +   M
Sbjct: 278 ELGEQ-LHCLVIKWGFHSET--YVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 154/378 (40%), Gaps = 88/378 (23%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           SVL     + G+L  A  +  ++P+ DVVS+  M++   +  D    A   F+ +  +  
Sbjct: 502 SVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG-YVQHDMFSEALQLFEEMEYRGI 560

Query: 69  -------------------------------------DTASWNTMISGFVQKKNMAKARD 91
                                                D +  N +IS + +   + +A  
Sbjct: 561 QFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYL 620

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------------------------- 124
            F  + +KN++SW++++SG  + G  ++A+++F                           
Sbjct: 621 AFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLAN 680

Query: 125 --KVAPVKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             +   + S+V  T          ++IS Y K G +  A + F++M  +N+++WNAMI G
Sbjct: 681 IKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITG 740

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCK 231
           Y ++    + L+L   M   GI PN  +   VL  CSH+  ++ G    + +FK   L  
Sbjct: 741 YSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVP 800

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK---GEKALRLF 287
            +     ++ +  + G L+ A +   E+    D + W  ++S    H     GE+A    
Sbjct: 801 KSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHL 860

Query: 288 DKMKDEGMKPDSITFVAL 305
            +++ E    DS T+V +
Sbjct: 861 LELEPE----DSATYVLI 874



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 75/172 (43%)

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           ++L+  M   G+R N  +   +L GC    SL    ++H  + KS    +   +  L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y + GD   A K+F E   + V +WN MI  +       +   LF +M  EG+ P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             +L AC    +    ++   S    YG  + P     ++DL  + G +  A
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/616 (34%), Positives = 337/616 (54%), Gaps = 48/616 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP----DVVSYNIMLS-CILLNSDDV 55
           M  +  ++WNS++A      G    A EL  ++ Q     + V++   LS C  L +  +
Sbjct: 322 MRERDLISWNSMMASHVDN-GNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI 380

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           V AF     L   +    N +++ + +  +MA A+ +   MP+++ V+W+A+I G+ +  
Sbjct: 381 VHAFVILLGLH-HNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNK 439

Query: 116 QLDKAVELFKV-----APVKSVV-----------------------------------AW 135
           + + A+E F +      PV  +                                      
Sbjct: 440 EPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQ 499

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +++I+ Y + G ++ +  +FD +  KN  TWNA+++        E+ LKL+  M   GI 
Sbjct: 500 SSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIH 559

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  S S       +L+ L  G+Q+H L+ K     +   L   + MY KCG+++D  ++
Sbjct: 560 LDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRI 619

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
             + + +   +WN +IS  A+HG  ++A   F +M D G++PD +TFV+LL AC+H GLV
Sbjct: 620 LPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLV 679

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           D G+ YF SM   +G+    +H  C++DLLGRAGKL EA + I KMP  P   ++ +LL+
Sbjct: 680 DEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLA 739

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           AC++H  L+LA  AA  LF L+ ++ +  YV  +N+ A+ ++W DV  +R  M+ +N+ K
Sbjct: 740 ACKIHGNLELARKAADRLFELDSSDDSA-YVLYSNVCASTRRWRDVENVRKQMESHNIKK 798

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
            P  SW+++   V  F  GD+ HP+   I+ KL+EL+K ++ AGY+PD  ++L    EE 
Sbjct: 799 KPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQ 858

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE  L  HSE++A+AFGLI    G+P+R+FKNLRVCGDCH   K +S I  R+II+RD  
Sbjct: 859 KEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAY 918

Query: 556 RFHHFKDGTCSCGDYW 571
           RFHHF  G CSC DYW
Sbjct: 919 RFHHFSSGKCSCSDYW 934



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 10/309 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI-----SGYI 112
           F ++P ++ ASWN ++SGFV+     KA   F  M E     +S   ++++     SG +
Sbjct: 15  FDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTACDRSGCM 74

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
             G       + K      V   T+++  Y  FG V   + +F E+   N+V+W +++ G
Sbjct: 75  TEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVG 134

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y  N   ++ + + R +   G+  N +++++V+  C  L    LG QV   V KS L   
Sbjct: 135 YAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTT 194

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
            +    LISM+  C  +E+A  +F +++ +D ++WN++I+    +G  EK+L  F +M+ 
Sbjct: 195 VSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRY 254

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
              K D IT  ALL  C  A  +  G +    MV   G+ +       ++ +  +AGK  
Sbjct: 255 THAKTDYITISALLPVCGSAQNLRWG-RGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSE 313

Query: 353 EAVDLIKKM 361
           +A  +  KM
Sbjct: 314 DAEFVFHKM 322



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 11/266 (4%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           N D +  A   F  +  +DT SWN++I+  V   +  K+ + F  M   ++ +    IS 
Sbjct: 207 NCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISA 266

Query: 111 YIE-CGQLDKAV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
            +  CG              + K     +V    +++S Y + GK + AE +F +M  ++
Sbjct: 267 LLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERD 326

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           L++WN+M+A +V+N      L+LL  M+      N  + ++ L  C +L +L++   VH 
Sbjct: 327 LISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHA 383

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            V    L  +      L++MY K G +  A ++   +  +D VTWNA+I G+A + +   
Sbjct: 384 FVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNA 443

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLA 308
           A+  F+ +++EG+  + IT V LL A
Sbjct: 444 AIEAFNLLREEGVPVNYITIVNLLSA 469



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 177/388 (45%), Gaps = 43/388 (11%)

Query: 56  VAAFDF-FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIE 113
           VA  D  F+ +   +  SW +++ G+     + +   ++  +       + +AM +    
Sbjct: 110 VAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRS 169

Query: 114 CGQLDKAVELFKV--APVKSVVAWTAMISGYM--KFGKVDLAEK---LFDEMPTKNLVTW 166
           CG L   +  ++V  + +KS +  T  ++  +   FG  D  E+   +FD+M  ++ ++W
Sbjct: 170 CGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISW 229

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N++I   V N   E  L+    M     + +  ++S++L  C    +L+ G+ +H +V K
Sbjct: 230 NSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVK 289

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S L  +      L+SMY + G  EDA  +F +++ +D+++WN+M++ +  +G   +AL L
Sbjct: 290 SGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALEL 349

Query: 287 FDKMKDEGMKPDSITFVALLLACN--------HAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
             +M       + +TF   L AC         HA ++ LG+ +   + N           
Sbjct: 350 LIEMLQTRKATNYVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIGN----------- 398

Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL-- 396
             +V + G+ G +  A  + K MP + +   +  L+     +K  +    AA+  FNL  
Sbjct: 399 -ALVTMYGKFGSMAAAQRVCKIMPDRDE-VTWNALIGGHADNKEPN----AAIEAFNLLR 452

Query: 397 ---NPANAAGCYVQLANIYAAMKKWDDV 421
               P N    Y+ + N+ +A    DD+
Sbjct: 453 EEGVPVN----YITIVNLLSAFLSPDDL 476



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y KFG ++ A+ +FD+MP +N  +WN +++G+V   W +  ++    M+  G+RP++   
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 202 SSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S++  C     +  G  QVH  V K  L  D    T L+  Y   G + +   +F EI+
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--LG 318
             ++V+W +++ GYA +G  ++ + ++ +++ +G+  +      ++ +C    LVD  LG
Sbjct: 122 EPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC--GVLVDKMLG 179

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
            Q   S++   G+         ++ + G    + EA
Sbjct: 180 YQVLGSVIKS-GLDTTVSVANSLISMFGNCDSIEEA 214



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K G +E A  +F ++  ++  +WN ++SG+ + G  +KA++ F  M + G++P S  
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             +L+ AC+ +G +  G     + V   G+A      T ++   G  G + E VD++ K 
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAE-VDMVFKE 119

Query: 362 PFKPQPAIFGTLL 374
             +P    + +L+
Sbjct: 120 IEEPNIVSWTSLM 132


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/468 (41%), Positives = 286/468 (61%), Gaps = 2/468 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAP-VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +A+   Y  CG +     +F   P V+ VV W A+++GY++ G V  A ++F+EMP ++ 
Sbjct: 169 NALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDE 228

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+W+ ++ GYV+    +  L + R M+  G+R N +++ + L   + +  L+ G+ VH++
Sbjct: 229 VSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEV 288

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           V ++ +         L+ M+ KCG +  A ++F  + R+DV  WNAMI G A HG G+ A
Sbjct: 289 VQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDA 348

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + LF +  DEG+ P  ITFV +L AC+  GLV  G +YF  MV+ Y I  + +HY CMVD
Sbjct: 349 VELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVD 408

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAG + EA++LI+ M   P P ++GT+LSAC+ H  +DL       L  L PA+  G
Sbjct: 409 LLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAH-DG 467

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            YV LA+IYA  KKWD+V  +R  M      K  G+S +E    +H+F  GD  H + V 
Sbjct: 468 HYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQ 527

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I+  L  + +R+  AGYVPD+   LH +G+E K   +  HSE+LAIA+G I   +G+PIR
Sbjct: 528 IYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPIR 587

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KNL+VCGDCH  +K ++ +  REIIVRD +RFHH K+G CSC DYW
Sbjct: 588 IVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 75/348 (21%)

Query: 54  DVVAAFDFFQRLP-IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           DV A    F  LP ++D  +WN +++G+V+   +  AR++F  MP ++ VSWS ++ GY+
Sbjct: 180 DVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYV 239

Query: 113 ECGQLDKAVELFKVAPVK---------------------------------------SVV 133
           + G+LD A+ +F+    K                                       SV 
Sbjct: 240 KEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVN 299

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
              A++  + K G V +A ++FD MP +++  WNAMI G   +   +D ++L    +  G
Sbjct: 300 VGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEG 359

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P   +   VL  CS    +  G++  +L+       D   + P +  Y          
Sbjct: 360 LWPTDITFVGVLNACSRCGLVAEGRRYFKLMV------DKYRIEPEMEHY---------- 403

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
                           M+    + G   +A+ L + M    + PD + +  +L AC    
Sbjct: 404 --------------GCMVDLLGRAGLVSEAIELIEGMH---IAPDPVLWGTVLSACKTHN 446

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           LVDLGI   + ++      A   HY  +  +  +A K  E  ++ K M
Sbjct: 447 LVDLGITVGNKLIELE--PAHDGHYVLLASIYAKAKKWDEVREVRKLM 492



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 33/198 (16%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           +S+S+ L    H +S  LG  VH L  K+    D      L   Y  CGD+     +F E
Sbjct: 131 ASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDE 190

Query: 259 IQR-KDVVTWNAMISGYAQHG-----------------------------KGE--KALRL 286
           + R +DVVTWNA+++GY + G                             +GE   AL +
Sbjct: 191 LPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGV 250

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M ++G++ +    V  L A    GL++ G ++   +V   G+    +    +VD+  
Sbjct: 251 FRDMVEKGVRVNEAAVVTALSAAAQMGLLEHG-RFVHEVVQRTGMPVSVNVGAALVDMFS 309

Query: 347 RAGKLVEAVDLIKKMPFK 364
           + G +  A ++   MP +
Sbjct: 310 KCGCVAVAREVFDGMPRR 327


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 341/628 (54%), Gaps = 70/628 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIML-SCILLNSDD---- 54
           +  V+W +++ G   Q G   ++  LF K+     +P+  +++  L +C LLN  D    
Sbjct: 36  RNVVSWTALMCGHI-QNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQ 94

Query: 55  -----VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
                V   FD    +        N++I  + +   + +A  +F  MP +N +SW+AMI+
Sbjct: 95  IHDICVKTGFDMVNVVG-------NSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIA 147

Query: 110 GYIECGQLDKAVELFK------------------------------------------VA 127
           GY   G  +KA+ LF+                                          + 
Sbjct: 148 GYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLY 207

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
            V + VA  A+I  Y+K GK+ +A ++F  +  K++++W A+I GY +     + ++L R
Sbjct: 208 SVNTAVA-GALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFR 266

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            +    I+ +   LSS++   +  + +Q GKQ+H    K P   D +    ++ MY KCG
Sbjct: 267 QLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCG 326

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            + +A +LF E+  ++V++W  MI+GY +HG G++A+RLFD+M+ +  +PD +T++A+LL
Sbjct: 327 MINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLL 386

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
            C+H+GLV+ G +YF  + + +GI A+ +HY CMVDLLGRAG+L EA +L+  MP +   
Sbjct: 387 GCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANV 446

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            I+ TLLSACRVH  L+L +     L  L+  N    YV ++NIYA    W +  RIR  
Sbjct: 447 GIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVN-YVMMSNIYADAGYWKECERIREL 505

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEF 486
           +K   + K  G SW+E+   VH F  GD  HP    IHE LKE+E+RMK   GYV  +++
Sbjct: 506 VKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKY 565

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP---IRVFKNLRVCGDCHRATKYISA 543
           ALH V EE K   L  HSEKLAI   L+   L      IRVFKNLRVCGDCH   K +S 
Sbjct: 566 ALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSK 625

Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I +   +VRD  RFH F+DG CSC DYW
Sbjct: 626 ILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 151/317 (47%), Gaps = 15/317 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIE 113
           A D F R+  ++  SW  ++ G +Q  N  ++  LF    L+  + N  ++S  +     
Sbjct: 26  ACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGL 85

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
              LD   ++  +          V   ++I  Y K G+++ A  +F+ MP +NL++WNAM
Sbjct: 86  LNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAM 145

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           IAGY    + E  L L + M  +G   +  + +S L  CS L +++ G Q+H  +     
Sbjct: 146 IAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGF 205

Query: 230 CK--DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
               +T     LI +Y KCG L  A ++F  I+ K V++W A+I GYAQ G   +++ LF
Sbjct: 206 LYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELF 265

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLL 345
            ++++  ++ D     +++       LV  G Q     +    + +  D   C  ++D+ 
Sbjct: 266 RQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK---VPSGVDISVCNSILDMY 322

Query: 346 GRAGKLVEAVDLIKKMP 362
            + G + EA  L  +MP
Sbjct: 323 LKCGMINEAERLFSEMP 339



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K G++ +A  +FD M  +N+V+W A++ G+++N    + L L   M   G++PN
Sbjct: 13  LIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPN 72

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             + S+ L  C  L+ L +G+Q+H +  K+           +I MY KCG + +A  +F 
Sbjct: 73  DFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFE 132

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +++++WNAMI+GY   G  EKAL LF KM++ G   D  TF + L AC+  G +  
Sbjct: 133 VMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKE 192

Query: 318 GIQYFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           G Q    ++   +  +        ++DL  + GKL  A
Sbjct: 193 GNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMA 230



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 61/333 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN+++AG+    G  + A  LF K+ +          +  L    D+ A  +
Sbjct: 134 MPVRNLISWNAMIAGYTVA-GFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKE 192

Query: 61  FFQRLPIKDTASW----NTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
             Q      T  +    NT ++G     +V+   +  AR +F  + EK+ +SW+A+I GY
Sbjct: 193 GNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGY 252

Query: 112 IECGQLDKAVELFK-------------VAPVKSVVAWTAMI--------------SG--- 141
            + G L +++ELF+             ++ +  V A  A++              SG   
Sbjct: 253 AQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDI 312

Query: 142 ---------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
                    Y+K G ++ AE+LF EMP +N+++W  MI GY ++   ++ ++L   M   
Sbjct: 313 SVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLD 372

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK------DTTALTPLISMYCKC 246
              P+  +  +VLLGCSH   ++ G++     + S LC              ++ +  + 
Sbjct: 373 STEPDDVTYLAVLLGCSHSGLVEKGQE-----YFSRLCSYHGIKARVEHYACMVDLLGRA 427

Query: 247 GDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHG 278
           G L++A  L   +    +V  W  ++S    HG
Sbjct: 428 GRLKEAKNLVDSMPLEANVGIWQTLLSACRVHG 460


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/618 (35%), Positives = 334/618 (54%), Gaps = 49/618 (7%)

Query: 1   MNVKTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCI---LLNSD 53
           M  +  ++WNS++ G+      ++G     Q LF  I        ++   C    L++  
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             V  F        +D    NT++  + +  ++  A+ +F  M  ++ VS+++MI+GY  
Sbjct: 316 RAVHCFGVKACFSREDRFC-NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAR 374

Query: 114 CGQLDKAVELFK------VAP--------------------VKSVVAW------------ 135
            G   +AV+LF+      ++P                     K V  W            
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFV 434

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM-IGLG 193
             A++  Y K G +  AE +F EM  K++++WN +I GY +N +A + L L  ++ +   
Sbjct: 435 SNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKR 494

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             P+  +++ VL  C+ LS+   G+++H  + ++    D      L+ MY KCG L  A 
Sbjct: 495 FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAR 554

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            LF +I  KD+V+W  MI+GY  HG G++A+ LF++M+  G++PD I+FV+LL AC+H+G
Sbjct: 555 LLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSG 614

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G ++F+ M ++  I    +HY C+VD+L R G L +A   I+ MP  P   I+G L
Sbjct: 615 LVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGAL 674

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L  CR+H  + LAE  A  +F L P N  G YV +ANIYA  +KW++V R+R  + +  +
Sbjct: 675 LCGCRIHHDVKLAERVAEKVFELEPEN-TGYYVLMANIYAEAEKWEEVKRLRKRIGQRGL 733

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG SWIE+   V+ F +GD  +PE   I   L+ +  RM   GY P  ++AL    E
Sbjct: 734 RKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEE 793

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
             KE+ L  HSEKLA+A G+I    G  IRV KNLRVCGDCH   K++S + +REI++RD
Sbjct: 794 MEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRD 853

Query: 554 TTRFHHFKDGTCSCGDYW 571
           + RFH FKDG CSC  +W
Sbjct: 854 SNRFHQFKDGHCSCRGFW 871



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 193/389 (49%), Gaps = 25/389 (6%)

Query: 23  LKDAQELFDKIPQPDVV---SYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           LKD +E+ + I     V   +    L+ +  N  D+  A   F ++ I+    WN +++ 
Sbjct: 110 LKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNE 169

Query: 80  FVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKS 131
             +  + + +  LF  M     E +S ++S +   +     ++   +L     K    + 
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGER 229

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
                ++++ Y+K  +VD A K+FDEM  +++++WN++I GYV N  AE GL +   M+ 
Sbjct: 230 NSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLF 289

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            GI  + +++ SV  GC+    + LG+ VH    K+   ++      L+ MY KCGDL+ 
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F E+  + VV++ +MI+GYA+ G   +A++LF++M++EG+ PD  T  A+L  C  
Sbjct: 350 AKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 312 AGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQP 367
             L+D G +  + +  ND G      +   ++D+  + G + EA  +  +M  K      
Sbjct: 410 NRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVKDIISWN 467

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            + G     C  ++        A++LFNL
Sbjct: 468 TVIGGYSKNCYANE--------ALSLFNL 488



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 187/402 (46%), Gaps = 51/402 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNS 52
           + ++  + WN ++   AK  G    +  LF K+    V   +   SC+         +N 
Sbjct: 155 VKIEKALFWNILMNELAKS-GDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNG 213

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            + +  +        +++   N++++ +++   +  AR +F  M E++ +SW+++I+GY+
Sbjct: 214 GEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 113 ECGQLDKAVELF----------KVAPVKSVVAWTA------------------------- 137
             G  +K + +F           +A + SV A  A                         
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 138 ----MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
               ++  Y K G +D A+ +F EM  +++V++ +MIAGY     A + +KL   M   G
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           I P+  ++++VL  C+    L  GK+VH+ + ++ +  D      L+ MY KCG + +A 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD-KMKDEGMKPDSITFVALLLACNHA 312
            +F E++ KD+++WN +I GY+++    +AL LF+  + ++   PD  T   +L AC   
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
              D G +    ++ + G  +       +VD+  + G L+ A
Sbjct: 513 SAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALLLA 553



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +++   N  +  + E+   ++ +KLL +     I P   +L SVL  C+   SL+ GK+V
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
              +  +    D+   + L  MY  CGDL++A ++F +++ +  + WN +++  A+ G  
Sbjct: 117 DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDF 176

Query: 281 EKALRLFDKMKDEGMKPDSITF 302
             ++ LF KM   G++ DS TF
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTF 198


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/626 (36%), Positives = 348/626 (55%), Gaps = 68/626 (10%)

Query: 4    KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML-----SCILL-------- 50
            K +V+WNS+++G   Q    +DA E F ++ +   +  N  L     SC  L        
Sbjct: 924  KDSVSWNSLISGL-DQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQ 982

Query: 51   -NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
             + D +    D        D +  N +++ + +     +   +F  MPE + VSW+++I 
Sbjct: 983  IHCDGLKLGLD-------TDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIG 1035

Query: 110  GYIEC-GQLDKAVELF---------------------------------------KVAPV 129
               +    + +AV+ F                                       K    
Sbjct: 1036 ALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLS 1095

Query: 130  KSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                   A++S Y K G+++  EK+F  M  T++ V+WN+MI+GY+ N      + L+  
Sbjct: 1096 DDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWF 1155

Query: 189  MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
            M+  G R ++ + ++VL  C+ +++L+ G +VH    ++ +  D    + L+ MY KCG 
Sbjct: 1156 MMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGR 1215

Query: 249  LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVALLL 307
            ++ A + F  +  ++V +WN+MISGYA+HG GEKAL+LF +M  +G  PD +   + +L 
Sbjct: 1216 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLS 1275

Query: 308  ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
            AC+H G V+ G ++F SM   Y ++ + +H++CMVDLLGRAGKL E  D I  MP KP  
Sbjct: 1276 ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNV 1335

Query: 368  AIFGTLLSAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
             I+ T+L AC R + R  +L   AA  L  L P NA   YV LAN+YA+ +KW+DVA+ R
Sbjct: 1336 LIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVN-YVLLANMYASGEKWEDVAKAR 1394

Query: 426  LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             +MKE  V K  G SW+ +   VH F +GD++HPE   I++KL+EL ++M+ AGY+P  +
Sbjct: 1395 XAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTK 1454

Query: 486  FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
            +AL  +  E KE+LL +HSEK+A+AF L +     PIR+ KNLRVCGDCH A  YIS I 
Sbjct: 1455 YALFDLELENKEELLSYHSEKIAVAFVLTRQS-ALPIRIMKNLRVCGDCHSAFGYISKIV 1513

Query: 546  KREIIVRDTTRFHHFKDGTCSCGDYW 571
             R+I++RD+ RFHHF+DG CSCGDYW
Sbjct: 1514 GRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 169/348 (48%), Gaps = 27/348 (7%)

Query: 37   DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
            DVV  N+++S      D    A   F R+ I+++ SWN++IS + ++ +   A DLF +M
Sbjct: 681  DVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 97   PEK--------NSVSWSAMISGYIECGQLDKAV--------ELFKVAPVKSVVAWTAMIS 140
             ++        N  ++ ++I+    C  +D  +         + K   ++ +   +A++S
Sbjct: 741  QKEGLGFSFKPNEYTFGSLITA--ACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVS 798

Query: 141  GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
            G+ +FG  D A+ +F++M  +N+V+ N ++ G V+    E   K+   M  L +  N+ S
Sbjct: 799  GFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL-VGINSDS 857

Query: 201  LSSVLLGCSHLSSLQ----LGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKL 255
               +L   S  S L+     G++VH  V ++ L  +  A+   L++MY K G + DAC +
Sbjct: 858  YVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSV 917

Query: 256  FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
            F  +  KD V+WN++ISG  Q+   E A   F +M+  G  P + T ++ L +C   G +
Sbjct: 918  FELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWI 977

Query: 316  DLGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
             LG Q + D +    G+         ++ L    G   E + +   MP
Sbjct: 978  MLGEQIHCDGL--KLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP 1023



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 13/238 (5%)

Query: 100 NSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLF 155
           +S ++ ++I+ Y      ++A EL     K   V ++     +I+ Y++ G +  A+KLF
Sbjct: 543 SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLF 602

Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLSS 213
           DEM  +NLVTW  +I+GY +N   ++     R M+  G  PN  +  S L  C  S  S 
Sbjct: 603 DEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG 662

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQRKDVVTWNAMIS 272
            +LG Q+H L+ K+    D      LISMY  C D   DA  +F  I  ++ ++WN++IS
Sbjct: 663 CKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIIS 722

Query: 273 GYAQHGKGEKALRLFDKMKDEGM----KPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
            Y++ G    A  LF  M+ EG+    KP+  TF +L+ A   +  VD G+   + M+
Sbjct: 723 VYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSS--VDFGLCVLEQML 778



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 173/377 (45%), Gaps = 48/377 (12%)

Query: 3    VKTTVNWNSVLAG------FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDD 54
            ++T +N N V  G      +AK  G + DA  +F+ + + D VS+N ++S +  N  S+D
Sbjct: 886  IRTGLNDNKVAIGNGLVNMYAKS-GAIADACSVFELMVEKDSVSWNSLISGLDQNECSED 944

Query: 55   VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
               +F     L ++ T S   M S F           L   +    S+ W  M+   I C
Sbjct: 945  AAESF-----LRMRRTGS---MPSNFT----------LISTLSSCASLGW-IMLGEQIHC 985

Query: 115  GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY- 173
              L       K+     V    A+++ Y + G      K+F  MP  + V+WN++I    
Sbjct: 986  DGL-------KLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALS 1038

Query: 174  -VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
              E S ++     L MM G G   +  +  ++L   S LS  ++  Q+H LV K  L  D
Sbjct: 1039 DSEASVSQAVKYFLEMMRG-GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDD 1097

Query: 233  TTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
            T     L+S Y KCG++ +  K+F  + + +D V+WN+MISGY  +    KA+ L   M 
Sbjct: 1098 TAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMM 1157

Query: 292  DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGR 347
             +G + DS TF  +L AC     ++ G++     V+  GI A  +      + +VD+  +
Sbjct: 1158 QKGQRLDSFTFATVLSACASVATLERGME-----VHACGIRACMESDVVVGSALVDMYSK 1212

Query: 348  AGKLVEAVDLIKKMPFK 364
             G++  A    + MP +
Sbjct: 1213 CGRIDYASRFFELMPLR 1229



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/449 (20%), Positives = 197/449 (43%), Gaps = 63/449 (14%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--------PDVVSYNIMLS------ 46
            + ++ +++WNS+++ +++ RG    A +LF  + +        P+  ++  +++      
Sbjct: 709  IGIRNSISWNSIISVYSR-RGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSV 767

Query: 47   ----CILLN----------------SDDVVAAF----------DFFQRLPIKDTASWNTM 76
                C+L                     +V+ F          + F+++ +++  S N +
Sbjct: 768  DFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGL 827

Query: 77   ISGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKA--------VELFK 125
            + G V++K    A  +F  M +    NS S+  ++S + E   L++           + +
Sbjct: 828  MVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIR 887

Query: 126  VAPVKSVVA-WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
                 + VA    +++ Y K G +  A  +F+ M  K+ V+WN++I+G  +N  +ED  +
Sbjct: 888  TGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAE 947

Query: 185  LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
                M   G  P+  +L S L  C+ L  + LG+Q+H    K  L  D +    L+++Y 
Sbjct: 948  SFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYA 1007

Query: 245  KCGDLEDACKLFLEIQRKDVVTWNAMISGYA-QHGKGEKALRLFDKMKDEGMKPDSITFV 303
            + G   +  K+F  +   D V+WN++I   +       +A++ F +M   G     +TF+
Sbjct: 1008 ETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFI 1067

Query: 304  ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
             +L A +   L ++  Q   ++V  Y ++        ++   G+ G++ E   +  +M  
Sbjct: 1068 NILSAVSSLSLHEVSHQ-IHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSE 1126

Query: 364  KPQPAIFGTLLSAC----RVHKRLDLAEF 388
                  + +++S       +HK +DL  F
Sbjct: 1127 TRDEVSWNSMISGYIHNELLHKAMDLVWF 1155



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 24/299 (8%)

Query: 42  NIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMISGFVQK----KNMAKARDLF 93
           N+ LS  L+N      D+ +A   F  +  ++  +W  +ISG+ Q     +  A+ RD+ 
Sbjct: 578 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 94  LAMPEKNSVSWSAMISGYIECG----QLDKAVE--LFKVAPVKSVVAWTAMISGYMK-FG 146
            A    N  ++ + +    E G    +L   +   + K      VV    +IS Y     
Sbjct: 638 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 697

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM----IGLGIRPNASSLS 202
             + A  +FD +  +N ++WN++I+ Y           L   M    +G   +PN  +  
Sbjct: 698 SANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFG 757

Query: 203 SVLL-GCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           S++   CS +   L + +Q+   V KS   +D    + L+S + + G  +DA  +F ++ 
Sbjct: 758 SLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMG 817

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLG 318
            ++VV+ N ++ G  +  +GE A ++F +MKD  G+  DS  +V LL A +   +++ G
Sbjct: 818 VRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDS--YVVLLSAFSEFSVLEEG 874


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 327/577 (56%), Gaps = 33/577 (5%)

Query: 21  GKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQRLP-----IKDTASW 73
           G    A+ LF +IP+   DV  +  +L+ ++ +       F FF+ +      + D A  
Sbjct: 67  GVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVA-- 124

Query: 74  NTMISGFV-----QKKNMAK-ARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVELFKV 126
             MIS FV     +   M + A+   + M     V   +A+++ Y++CG +++   +F  
Sbjct: 125 --MISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCE 182

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
              ++VV+W+ ++ G +K+  V+    +FDEMP +N V W  MIAGYV N ++ +G  LL
Sbjct: 183 MNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLL 242

Query: 187 -RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMY 243
             M++   +  N  +LSS+L  C+    + +G+ VH    K  + ++   +  T L+ MY
Sbjct: 243 DEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKG-MGREMHIMVGTALVDMY 301

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            KCG ++ A K+F  + +++VV WNAM+ G A HG+G+  L +F KM +E  KPD +TF+
Sbjct: 302 AKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFM 360

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           A+L AC+H+GLVD G  YF S+ ++YG   K +HY CMVD+LGRAG L EAV LIKKMP 
Sbjct: 361 AVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPM 420

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
            P   + G+LL +C  H +L L E     L  ++  N    +V L+N+Y    K D    
Sbjct: 421 CPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTE-YHVLLSNMYVLEGKQDKANS 479

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
           +R  +K   + K+PG S I VG  +H+F +GD+ HP    I+  L  + +R++LAGYVP+
Sbjct: 480 LRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPN 539

Query: 484 LEFALHAVGE---------EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
               +    +         E KEQ L  HSEKLA+ FG I    G P+ +FKNLR+C DC
Sbjct: 540 TTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDC 599

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H A K +S I  REI++RD  RFH FK G+CSC DYW
Sbjct: 600 HSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCK---DTTALTPLISMYCKCGDLEDACKLFLEI 259
           S+L  C+  SSL  GK++H ++  S L     +T  L  L  +Y  CG    A  LF +I
Sbjct: 20  SLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQI 79

Query: 260 QR--KDVVTWNAMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
            R  KDV  W  +++   QHG K  +    F +M+ EG+  D +  +++ + C     + 
Sbjct: 80  PRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLG 139

Query: 317 LGIQ 320
           +G Q
Sbjct: 140 MGRQ 143


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 298/527 (56%), Gaps = 11/527 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A   F+ +P  D   W+ +IS + Q     +A ++FL M       N  S S ++ 
Sbjct: 299 DIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQ 358

Query: 110 G-----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
                 ++E G+    + + K+     +    A++  Y K   ++ + ++F  +   N V
Sbjct: 359 ACANIAFLELGEQIHNLAI-KLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEV 417

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           +WN +I GY ++ +AED L +   M    +     + SSVL  C++ SS++   Q+H L+
Sbjct: 418 SWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLI 477

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
            KS    DT     LI  Y KCG + DA K+F  I   DVV+WN++IS YA HG+   AL
Sbjct: 478 EKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNAL 537

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LFD+M    +K + +TFV+LL  C   GLV+ G+  F+SM+ D+ I    +HYTC+V L
Sbjct: 538 ELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRL 597

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
           LGRAG+L +A+  I  +P  P P ++  LLS+C VHK + L  +AA  + ++ P +    
Sbjct: 598 LGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETT- 656

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           YV L+N+YAA    D+VA  R SM+   V K  G SW+E+   VH F  G   HP++  I
Sbjct: 657 YVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRII 716

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
           +  L+ L  +    GYVPD+   LH V EE K ++L  HSE+LA+A+GL   P G PIR+
Sbjct: 717 NAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRI 776

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLR C DCH   K IS I +REIIVRD  RFHHF++G CSCGDYW
Sbjct: 777 MKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 39/291 (13%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---- 124
           DT   N +++ + +   +A AR LF  MPE+N VS+  ++ GY   G+ ++A+ELF    
Sbjct: 81  DTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQ 140

Query: 125 -----------------------------------KVAPVKSVVAWTAMISGYMKFGKVD 149
                                              K+   ++    TA+I  Y   G V 
Sbjct: 141 REGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVC 200

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A  +FD +  K+ VTW AM++ Y EN   E  L     M   G +PN   L+S L    
Sbjct: 201 HARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAV 260

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            LSS  LGK +H    K+    +      L+ MY KCGD+EDA  +F  I   DV+ W+ 
Sbjct: 261 CLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSF 320

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
           +IS YAQ  + E+A  +F +M    + P+  +   +L AC +   ++LG Q
Sbjct: 321 LISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQ 371



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 192/478 (40%), Gaps = 112/478 (23%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--- 67
           +VL  F  + G L  A+ LFD +P+ + VS+  ++    L  +    A + F+RL     
Sbjct: 86  NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGE-FEEALELFRRLQREGH 144

Query: 68  ------------------------------------KDTASWNTMISGFVQKKNMAKARD 91
                                               ++      +I  +     +  AR 
Sbjct: 145 EVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARC 204

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAWTA 137
           +F  +  K++V+W+AM+S Y E    + A+  F                + +K+ V  ++
Sbjct: 205 VFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSS 264

Query: 138 MISG-------------------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            + G                         Y K G ++ A  +F+ +P  +++ W+ +I+ 
Sbjct: 265 ALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISR 324

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y ++   E   ++   M+   + PN  SLS VL  C++++ L+LG+Q+H L  K     +
Sbjct: 325 YAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESE 384

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 L+ MY KC ++E++ ++F  +Q  + V+WN +I GY Q G  E AL +F +M+ 
Sbjct: 385 LFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRA 444

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYF---------------DSMVNDYG----IAA 333
             M    +TF ++L AC +   +   +Q                 +S+++ Y     I  
Sbjct: 445 AHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRD 504

Query: 334 KPDHYTCMVD--------------LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
               +  +V+              L GRA   +E  D + K   K     F +LLS C
Sbjct: 505 ALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVC 562



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 6/246 (2%)

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           + V+   VA + +  A   +++ Y K G +  A +LFD MP +N V++  ++ GY     
Sbjct: 70  RVVQRGGVAQLDTFCA-NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGE 128

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ L+L R +   G   N   L+++L     + +  L   +H    K    ++    T 
Sbjct: 129 FEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTA 188

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI  Y  CG +  A  +F  I  KD VTW AM+S Y+++   E AL  F KM+  G KP+
Sbjct: 189 LIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPN 248

Query: 299 SITFVALLLA--CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
                + L A  C  + L+  GI +  S+   Y    +P     ++D+  + G + +A  
Sbjct: 249 PFVLTSALKAAVCLSSALLGKGI-HGCSVKTLYD--TEPHVGGALLDMYAKCGDIEDAHA 305

Query: 357 LIKKMP 362
           + + +P
Sbjct: 306 IFEMIP 311


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/506 (41%), Positives = 291/506 (57%), Gaps = 12/506 (2%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVA 127
           N ++S + +   +++AR +   M  ++ VSW++++ GY +  + D A+E+       K++
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
                +A             V   + +F +M  K+LV+WN MI  Y++N+   + ++L  
Sbjct: 239 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 298

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M   G  P+A S++SVL  C   S+L LGK++H  + +  L  +      LI MY KCG
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCG 358

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
            LE A  +F  ++ +DVV+W AMIS Y   G+G  A+ LF K++D G+ PDSI FV  L 
Sbjct: 359 CLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLA 418

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL++ G   F  M + Y I  + +H  CMVDLLGRAGK+ EA   I+ M  +P  
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
            ++G LL ACRVH   D+   AA  LF L P   +G YV L+NIYA   +W++V  IR  
Sbjct: 479 RVWGALLGACRVHSDTDIGLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNI 537

Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
           MK   + K PG S +EV  ++H F  GDR HP+   I+ +L  L K+MK  GYVPD E A
Sbjct: 538 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESA 597

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVP-----LGTPIRVFKNLRVCGDCHRATKYIS 542
           LH V EE KE  L  HSEKLAI F L+            IR+ KNLR+CGDCH A K IS
Sbjct: 598 LHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLIS 657

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCG 568
            I  REII+RDT RFH F+ G CSC 
Sbjct: 658 QITSREIIIRDTNRFHVFRFGVCSCA 683



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y     V  A K+FDE+P +N++  N MI  YV N +  +G+K+   M G  +RP+
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  CS   ++ +G+++H    K  L         L+SMY KCG L +A  +  
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           E+ R+DVV+WN+++ GYAQ+ + + AL +  +M+   +  D+ T  +LL A ++    + 
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN- 258

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLL 374
            + Y   M    G  +    +  M+ +  +    VEAV+L  +M    F+P      ++L
Sbjct: 259 -VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 375 SAC 377
            AC
Sbjct: 317 PAC 319



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 181/414 (43%), Gaps = 72/414 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
           M+ +  V+WNS++ G+A Q  +  DA E+  ++    +      ++ +L       +++V
Sbjct: 201 MSRRDVVSWNSLVVGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           +   D F ++  K   SWN MI  +++     +A +L+  M     E ++VS ++++   
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA- 318

Query: 112 IECG---------QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
             CG         ++   +E  K+ P  +++   A+I  Y K G ++ A  +F+ M +++
Sbjct: 319 --CGDTSALSLGKKIHGYIERKKLIP--NLLLENALIDMYAKCGCLEKARDVFENMKSRD 374

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +V+W AMI+ Y  +    D + L   +   G+ P++ +  + L  CSH   L+ G+   +
Sbjct: 375 VVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+       D   +TP +           AC                M+    + GK ++
Sbjct: 435 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 464

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AKPDHYTCM 341
           A R    ++D  M+P+   + ALL AC      D+G+   D +   + +A  +  +Y  +
Sbjct: 465 AYRF---IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL---FQLAPEQSGYYVLL 518

Query: 342 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVHKRLD 384
            ++  +AG+  E     +++K    K  P         I  T L   R H + D
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSD 572



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           + VH  +    L  +++    L+  Y    D+  A K+F EI  ++V+  N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
           G   + +++F  M    ++PD  TF  +L AC+ +G + +G +   S     G+++    
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK-VGLSSTLFV 177

Query: 338 YTCMVDLLGRAGKLVEAVDLIKKM 361
              +V + G+ G L EA  ++ +M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/515 (38%), Positives = 311/515 (60%), Gaps = 10/515 (1%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI--SGYIECGQLD 118
           +  +D  SW ++I+G+ Q     +A  L L M     + N  ++++++  +G      + 
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 119 KAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           + +    V       V   +A++  Y + G++D+A  +FD++ +KN V+WNA+IAG+   
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
              E  L +   M   G      + SSV    + + +L+ GK VH  + KS         
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
             ++ MY K G + DA K+F  + +KD+VTWN+M++ +AQ+G G +A+  F++M+  G+ 
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 240

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
            + ITF+++L AC+H GLV  G QYFD M+ ++ +  + DHY  +VDLLGRAG L +A+ 
Sbjct: 241 LNQITFLSILTACSHGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGRAGLLNDALV 299

Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            I KMP KP  A++G LL +CR+HK   + +FAA ++F L+P +  G  V L NIYA+  
Sbjct: 300 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT-GPPVLLYNIYASTG 358

Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
           +WD  AR+R  MK   V K P  SW+E+   VH F + D  HP    I++K +E+  +++
Sbjct: 359 QWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIR 418

Query: 477 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
            AGYVP+ ++ L  V E+ ++  L +HSEK+A+AF LI +PLG  IR+ KN+R+CGDCH 
Sbjct: 419 KAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHS 478

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A +YIS + +REI+VRDT RFHHF  G+CSCGDYW
Sbjct: 479 AFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 12/234 (5%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           D  +A FD   +L  K+  SWN +I+GF +K +      +F  M     E    ++S++ 
Sbjct: 93  DMAIAVFD---QLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 149

Query: 109 SGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S     G L++       + K     S      ++  Y K G +  A K+FD +  K+LV
Sbjct: 150 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLV 209

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TWN+M+  + +     + +     M   G+  N  +  S+L  CSH   ++ GKQ   ++
Sbjct: 210 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM 269

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 277
            +  L  +      ++ +  + G L DA     ++  K     W A++     H
Sbjct: 270 KEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMH 323


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 292/518 (56%), Gaps = 9/518 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F+ +P  D    + MIS + Q     +A +LFL +       N  S S+++       QL
Sbjct: 302 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 361

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           D   ++     K+     +    A++  Y K   +D + K+F  +   N V+WN ++ G+
Sbjct: 362 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 421

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            ++   E+ L +   M    +     + SSVL  C+  +S++   Q+H  + KS    DT
Sbjct: 422 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 481

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                LI  Y KCG + DA K+F  +  +D+++WNA+ISGYA HG+   AL LFD+M   
Sbjct: 482 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 541

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            ++ + ITFVALL  C   GLV+ G+  FDSM  D+GI    +HYTC+V LLGRAG+L +
Sbjct: 542 NVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLND 601

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A+  I  +P  P   ++  LLS+C +HK + L  F+A  +  + P +    YV L+N+YA
Sbjct: 602 ALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET-TYVLLSNMYA 660

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A    D VA +R SM+   V K+PG SW+E+   +H F  G   HP++  I+  L+ L  
Sbjct: 661 AAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNL 720

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           +    GY+PD+   LH V +E K ++L  HSE+LA+A+GL+  P G PIR+ KNLR C D
Sbjct: 721 KTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLD 780

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH A   IS I KREIIVRD  RFHHF+DG CSCGDYW
Sbjct: 781 CHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 183/419 (43%), Gaps = 79/419 (18%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           +VL     + G L  A+ LFD++P+ ++VS+ + L        D  AA   F+RL  +  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSF-VTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 69  --------------------------DTASW------NTMI-SGFVQKKNM----AKARD 91
                                      + +W      N  + SG +   ++    + A  
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH 218

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT--------------- 136
           +F  +  K++V W+AM+S Y E    + A   F+ A   S++A +               
Sbjct: 219 VFNGIVRKDAVVWTAMVSCYSENDCPENA---FRCAQSCSLLAISCARQGIHGCAIKTLN 275

Query: 137 --------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                   A++  Y K G +  A   F+ +P  +++  + MI+ Y +++  E   +L   
Sbjct: 276 DTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLR 335

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           ++   + PN  SLSSVL  C+++  L  GKQ+H    K     D      L+  Y KC D
Sbjct: 336 LMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCND 395

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           ++ + K+F  ++  + V+WN ++ G++Q G GE+AL +F +M+   M    +T+ ++L A
Sbjct: 396 MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRA 455

Query: 309 C------NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           C       HAG +   I+   +  ND  I         ++D   + G + +A+ + + +
Sbjct: 456 CASTASIRHAGQIHCSIEK-STFNNDTVIG------NSLIDTYAKCGYIRDALKVFQHL 507



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 92/216 (42%), Gaps = 49/216 (22%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCI------------- 48
           V+WN+++ GF+ Q G  ++A  +F      ++P   V   +++ +C              
Sbjct: 412 VSWNTIVVGFS-QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHC 470

Query: 49  -----LLNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
                  N+D V+                A   FQ L  +D  SWN +ISG+      A 
Sbjct: 471 SIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAAD 530

Query: 89  ARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK-----SVVAWTAMI 139
           A +LF  M     E N +++ A++S     G ++  + LF    +      S+  +T ++
Sbjct: 531 ALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIV 590

Query: 140 SGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYV 174
               + G+++ A +   ++P+  + + W A+++  +
Sbjct: 591 RLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCI 626



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVH-QLVFKSPLCK-DT 233
           W ED L  L ++  +   P   S +    L GC      + G+ VH  +V +  + + D 
Sbjct: 40  WLEDELTSLAILPSV---PGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDL 96

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L++MY K G L  A +LF  +  +++V++  ++  +AQ G  E A  LF +++ E
Sbjct: 97  FCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWE 156

Query: 294 GMKPDSI---TFVALLLACNHAGL 314
           G + +     T + L +A + AGL
Sbjct: 157 GHEVNQFVLTTMLKLAIAMDAAGL 180


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 314/554 (56%), Gaps = 35/554 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVS--YNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G + DA+++F++ PQ   +S  YN ++S    NS    AA+  F+R+     +  +  + 
Sbjct: 102 GLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAY-MFRRMKETGVSVDSVTML 160

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           G V              +PE   +  S  + G    G LD  V +             + 
Sbjct: 161 GLVP----------LCTVPEYLWLGRS--LHGQCVKGGLDSEVAVL-----------NSF 197

Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
           I+ YMK G V+   +LFDEMP K L+TWNA+I+GY +N  A D L+L   M   G+ P+ 
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            +L SVL  C+HL + ++G +V +LV  +    +       ISMY +CG+L  A  +F  
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           +  K +V+W AMI  Y  HG GE  L LFD M   G++PD   FV +L AC+H+GL D G
Sbjct: 318 MPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 377

Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
           ++ F +M  +Y +   P+HY+C+VDLLGRAG+L EA++ I+ MP +P  A++G LL AC+
Sbjct: 378 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACK 437

Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 438
           +HK +D+AE A   +    P N  G YV ++NIY+  K  + + RIR+ M+E    K PG
Sbjct: 438 IHKNVDMAELAFAKVIEFEP-NNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPG 496

Query: 439 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR-MKLAGYVPDLEFALHAVGEEVKE 497
           YS++E    VH F +GDR H +   +H  L ELE   M+LAG + D +      GEEV  
Sbjct: 497 YSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM-DCD-----RGEEVSS 550

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
                HSE+LAIAFG++    GT I V KNLRVC DCH   K +S I  R+ +VRD +RF
Sbjct: 551 TTRE-HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRF 609

Query: 558 HHFKDGTCSCGDYW 571
           H+FKDG CSC DYW
Sbjct: 610 HYFKDGVCSCKDYW 623



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 3/231 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNL--VTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           TA+IS Y K G V  A K+F+E P  +   V +NA+I+GY  NS   D   + R M   G
Sbjct: 92  TALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETG 151

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +  ++ ++  ++  C+    L LG+ +H    K  L  +   L   I+MY KCG +E   
Sbjct: 152 VSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGR 211

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           +LF E+  K ++TWNA+ISGY+Q+G     L L+++MK  G+ PD  T V++L +C H G
Sbjct: 212 RLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              +G +    +V   G           + +  R G L +A  +   MP K
Sbjct: 272 AKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVK 321



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 3/201 (1%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN  +      S   + + L R M+  G  P+A S   +L  C+ LS    G+Q+H  V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKA 283
           K     +   LT LISMYCKCG + DA K+F E  +     V +NA+ISGY  + K   A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
             +F +MK+ G+  DS+T + L+  C     + LG       V   G+ ++       + 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG-GLDSEVAVLNSFIT 199

Query: 344 LLGRAGKLVEAVDLIKKMPFK 364
           +  + G +     L  +MP K
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVK 220



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 134/352 (38%), Gaps = 86/352 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVS-YNIMLSCILLNSDDV 55
           M VK  + WN+V++G++ Q G   D  EL++++      PD  +  +++ SC  L +  +
Sbjct: 217 MPVKGLITWNAVISGYS-QNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 275

Query: 56  -------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
                  V +  F   + +      N  IS + +  N+AKAR +F  MP K+ VSW+AMI
Sbjct: 276 GHEVGKLVESNGFVPNVFVS-----NASISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 330

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
             Y                             G    G++ L   LFD+           
Sbjct: 331 GCY-----------------------------GMHGMGEIGLM--LFDD----------- 348

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS- 227
                               MI  GIRP+ +    VL  CSH      G ++ + + +  
Sbjct: 349 --------------------MIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREY 388

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALR 285
            L       + L+ +  + G L++A + F+E      D   W A++     H   + A  
Sbjct: 389 KLEPGPEHYSCLVDLLGRAGRLDEAME-FIESMPVEPDGAVWGALLGACKIHKNVDMAEL 447

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
            F K+ +   +P++I +  L+           GI     M+ +     KP +
Sbjct: 448 AFAKVIE--FEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 497


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/640 (34%), Positives = 341/640 (53%), Gaps = 82/640 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++A +AK   + KDA  +FD +P  DV+S+N M+S    N      A + F R+ ++ 
Sbjct: 235 NALMAFYAKS-NRTKDAILVFDGMPHRDVISWNSMISGCTSNGL-YDKAIELFVRMWLEG 292

Query: 69  ---DTASWNTMI---------------------SGFVQKKNMAK--------------AR 90
              D+A+  +++                     +GF+ + ++A                 
Sbjct: 293 EELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTN 352

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--------------------- 129
            +F  M +KN VSW+AMI+ Y   G  DK   LF+   +                     
Sbjct: 353 KIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNE 412

Query: 130 -----KSVVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
                KSV  +              A++  Y+K G ++ A+ +FD + +K++++WN +I 
Sbjct: 413 LLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIG 472

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY  N+ A +   L   M+ L +RPNA +++ +L   + LSSL+ G+++H    +    +
Sbjct: 473 GYSRNNLANEAFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLE 531

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      LI MY KCG L  A +LF  +  K++++W  M++GY  HG+G  A+ LF++M+
Sbjct: 532 DDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMR 591

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G+ PD+ +F A+L AC+H+GL D G ++FD+M  ++ I  +  HYTCMVDLL   G L
Sbjct: 592 VSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNL 651

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA + I  MP +P  +I+ +LL  CR+H+ + LAE  A  +F L P N  G YV LANI
Sbjct: 652 KEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPEN-TGYYVLLANI 710

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA  ++W+ V +++  +    + +  G SWIE    VH F + +R HP+   I E L E+
Sbjct: 711 YAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEV 770

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            KRM+  G+ P  ++AL      V  + L  HS KLA+AFG++ +  G  IRV KN RVC
Sbjct: 771 AKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVC 830

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             CH A K+IS +  REII+RD+ RFHHF+ G CSC  YW
Sbjct: 831 SHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 40/269 (14%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVELFK------------- 125
           +++  ++  AR +F  MP+ + V  W+A++SGY + G L + V LF+             
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 126 -------VAPVKSV-------------------VAWTAMISGYMKFGKVDLAEKLFDEMP 159
                  +A + S+                       A+++ Y K  +   A  +FD MP
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
            +++++WN+MI+G   N   +  ++L   M   G   ++++L SVL  C+ L  L LG+ 
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRV 318

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           VH    K+     T+    L+ MY  C D     K+F  + +K+VV+W AMI+ Y + G 
Sbjct: 319 VHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGL 378

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLA 308
            +K   LF +M  EG +PD     + L A
Sbjct: 379 YDKVAGLFQEMGLEGTRPDIFAITSALHA 407



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 102/178 (57%), Gaps = 1/178 (0%)

Query: 142 YMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           Y+K G ++ A ++FDEMP   ++  W A+++GY +     +G+ L R M   G+RP+A +
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S VL   + L S++ G+ VH L+ K            L++ Y K    +DA  +F  + 
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
            +DV++WN+MISG   +G  +KA+ LF +M  EG + DS T +++L AC    L+ LG
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLG 316



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 171/397 (43%), Gaps = 62/397 (15%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK---DTTALTPLISMYCKCGDLEDACKLF 256
           S  +VL  CS + SL+ GK+ H LV  S L +   D      L+ MY KCGDLE+A ++F
Sbjct: 93  SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVF 152

Query: 257 LEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
            E+ Q  DV  W A++SGYA+ G   + + LF KM   G++PD+ T   +L      G +
Sbjct: 153 DEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSI 212

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           + G +    ++   G  ++      ++    ++ +  +A+ +   MP +   + + +++S
Sbjct: 213 EDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVIS-WNSMIS 270

Query: 376 ACRVHKRLDLA------------EFAAMNLFNLNPANA-----------------AGCYV 406
            C  +   D A            E  +  L ++ PA A                  G   
Sbjct: 271 GCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFIS 330

Query: 407 Q--LANI----YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 460
           Q  LAN+    Y+    W    +I  +M + NVV     SW  +  +    R+G      
Sbjct: 331 QTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVV-----SWTAM--ITSYTRAG------ 377

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL---AIAFGLIKVP 517
              +++K+  L + M L G  PD+ FA+ +         LL H + +   AI  G+ KV 
Sbjct: 378 ---LYDKVAGLFQEMGLEGTRPDI-FAITSALHAFAGNELLKHGKSVHGYAIRNGMEKV- 432

Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
           L     + +    CG+   A      +  +++I  +T
Sbjct: 433 LAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNT 469


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 279/446 (62%), Gaps = 4/446 (0%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLL 186
           V  V    +++  Y   G  + A K+FDEMP +  NLV+WN+M+  +  N    + L + 
Sbjct: 148 VTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF 207

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M+G+   P+  ++ SVL  C+   +L LG++VH  V K  L +++     LI +Y KC
Sbjct: 208 WEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKC 267

Query: 247 GDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
           G + DA ++F E+   + VV+W ++I G A +G G++AL LF  M+ E + P  IT V +
Sbjct: 268 GSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGV 327

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC+H GLVD G +YFD M  DYGI+ + +H  CMVDLLGRAG++ EA D I  MP +P
Sbjct: 328 LYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEP 387

Query: 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
              ++ TLL +C +HK+L+L + A   L  L+P ++ G YV L+N+YAA+  W DV  +R
Sbjct: 388 NAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHS-GDYVLLSNLYAAVGMWADVHVLR 446

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            +M ++ V K PG+S +E+   V+EF  GDR HPE   I+E L E+ +R++  GY+P   
Sbjct: 447 KTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTS 506

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
             L  + EE KE  L +HSE+LAIAF L+K   G PIR+ KNLR+CGDCH A   IS + 
Sbjct: 507 NVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVY 566

Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
            REIIVRD +RFHHF+ G CSC DYW
Sbjct: 567 DREIIVRDRSRFHHFQGGACSCKDYW 592



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            L+L R  + L   P+  +   ++  C+ L +L+ G+ +H    K+           L+ 
Sbjct: 103 ALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVH 159

Query: 242 MYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           +Y  CG  E A K+F E  ++ +++V+WN+M++ +A +G+  + L +F +M      PD 
Sbjct: 160 LYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDG 219

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
            T V++L AC   G + LG +     V   G+         ++DL  + G + +A  + +
Sbjct: 220 FTIVSVLTACAEFGALALG-RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFE 278

Query: 360 KM 361
           +M
Sbjct: 279 EM 280



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 13/238 (5%)

Query: 57  AAFDFFQRLPIK--DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
           +A   F  +P++  +  SWN+M++ F       +   +F  M       +  +  ++++ 
Sbjct: 169 SAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTA 228

Query: 111 YIECGQL--DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVT 165
             E G L   + V ++  KV  V++     A+I  Y K G V+ A ++F+EM   + +V+
Sbjct: 229 CAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVS 288

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLV 224
           W ++I G   N + ++ L+L  +M    + P   ++  VL  CSH   +  G +   ++ 
Sbjct: 289 WTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMK 348

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
               +      L  ++ +  + G +E+A    + +    + V W  ++   A H K E
Sbjct: 349 EDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLE 406


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/639 (33%), Positives = 340/639 (53%), Gaps = 80/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF-------- 59
           N++++ +AK   +++DA  +FD++PQ D++S+N ++     N   D  V  F        
Sbjct: 23  NALISFYAKSN-RIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQ 81

Query: 60  -----DFFQRLP-----------------------IKDTASWNTMISGFVQKKNMAKARD 91
                     +P                       I +T+  N ++  +    +      
Sbjct: 82  ELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNK 141

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----------------- 128
           +F  M +KN VSW+AMI+ Y   G  DK   LF+      + P                 
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNES 201

Query: 129 ---VKSVVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
               KSV  +              A++  Y+K G ++ A  +FD +  K+ ++WN +I G
Sbjct: 202 LKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGG 261

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y  ++ A +   L   M+ L +RPNA +++ +L   + LSSL+ G+++H    +    +D
Sbjct: 262 YSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLED 320

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 L+ MY KCG L  A +LF  +  K++++W  MI+GY  HG+G  A+ LF++MK 
Sbjct: 321 NFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKG 380

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
            G++PD+ +F A+L AC+H+GL D G ++F++M N++ I  K  HY CMVDLL   G L 
Sbjct: 381 SGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLK 440

Query: 353 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412
           EA + I+ MP +P  +I+ +LL  CR+H+ + LAE  A  +F L P N  G YV LANIY
Sbjct: 441 EAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPEN-TGYYVLLANIY 499

Query: 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 472
           A  ++W+ V +++  +    + +  G SWIEV    H F + +R HP+ + I E L ++ 
Sbjct: 500 AEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVA 559

Query: 473 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
           +RM+  G+ P  ++AL    + V ++ L  HS KLA+AFG++ +  G PIRV KN RVC 
Sbjct: 560 RRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCS 619

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            CH A K+IS +  REII+RD+ RFHHF++G CSC  YW
Sbjct: 620 HCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 166/394 (42%), Gaps = 60/394 (15%)

Query: 38  VVSYNIMLSCILLN--------SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           +V Y     C + N        S+ +  A   F  +P +D  SWN++I G        KA
Sbjct: 10  LVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKA 69

Query: 90  RDLFLAM-PEKNSVSWSAMISGYIECGQ-----LDKAVELFKVAP--VKSVVAWTAMISG 141
            +LF+ M  E   +  + ++S    C Q     +   V  + V    +       A++  
Sbjct: 70  VELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDM 129

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y          K+F  M  KN+V+W AMI  Y      +    L + M   GIRP+  ++
Sbjct: 130 YSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAI 189

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +S L   +   SL+ GK VH    ++ + +       L+ MY KCG +E+A  +F  + +
Sbjct: 190 TSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTK 249

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----------- 310
           KD ++WN +I GY++     +A  LF++M  + ++P+++T   +L A             
Sbjct: 250 KDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREM 308

Query: 311 HA---------------GLVDLGI---------QYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           HA                LVD+ +         + FD + N   I+     +T M+   G
Sbjct: 309 HAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLIS-----WTIMIAGYG 363

Query: 347 RAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 377
             G+  +A+ L ++M     +P    F  +L AC
Sbjct: 364 MHGRGRDAIALFEQMKGSGIQPDAGSFSAILYAC 397



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%)

Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           G  VH  + K            LIS Y K   +EDA  +F E+ ++D+++WN++I G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +G  +KA+ LF +M  EG + DS T ++++ AC
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPAC 95


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 310/554 (55%), Gaps = 18/554 (3%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           P    +S  ++  C +  S  +  A   F R+    T +WN+MI GF Q  +  + + + 
Sbjct: 427 PHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIV 486

Query: 94  L-------AMPEKNSVSWSAMISGYIECGQLDKAVE----LFKVAPVKSVVAWTAMISGY 142
                   +    ++ ++S ++    E  +  K  E    + +    + VV  T +I  Y
Sbjct: 487 FYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSY 546

Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
              G ++ A K+F+EMP ++LV+WN+MI+ Y +    E+ LK+   M    +  +  +L 
Sbjct: 547 AGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLV 606

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           S+L  C+H+ +L +G Q+H+   +  L ++      LI MY KCG L  A  +F  + ++
Sbjct: 607 SLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKR 666

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           DV TWN+MI GY  HG+G++A+  F  M   G++P+SITF+ LL  C+H GLV  G+QYF
Sbjct: 667 DVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYF 726

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
             M +++ +     HY CMVDL GRAGKL EA+++I+  P +  P ++ TLL +C++H+ 
Sbjct: 727 HMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRN 786

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           +++ E A  NL  L    A  C V L+ IYA  K    VAR+R  ++   +   PG+SWI
Sbjct: 787 VEIGEMAMRNLVQLGSLGAGDC-VLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWI 845

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL- 501
           EVG  VH F   D+ HP+   I+ KL+E+  R  L GY  + E +L A  E   ++    
Sbjct: 846 EVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAME-ESSLVAAPESNTQEYCWE 904

Query: 502 ----FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
               +HSEKLAIA+GL + P GT + + KNLRVC DCH  TK++S    REIIVRD  RF
Sbjct: 905 TSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRF 964

Query: 558 HHFKDGTCSCGDYW 571
           HHF+ G CSC ++W
Sbjct: 965 HHFRGGHCSCKEFW 978



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 129/333 (38%), Gaps = 60/333 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA------------AFDFFQRLPIK 68
           G ++ A ++F+++P  D+VS+N M+SC         A             FD F  + + 
Sbjct: 550 GLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLL 609

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
            + +    +   VQ    A  R L      +N    +A+I  Y +CG L  A+ +F   P
Sbjct: 610 SSCAHVGALHMGVQMHRFAGERRLV-----ENIFVGNALIDMYAKCGSLASALSIFNSMP 664

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
            + V  W +MI GY   G+ D A   F                                 
Sbjct: 665 KRDVFTWNSMIVGYGVHGRGDEAITFFGS------------------------------- 693

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCG 247
           M+  G+RPN+ +   +L GCSH   ++ G Q  H +  +  L         ++ ++ + G
Sbjct: 694 MLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAG 753

Query: 248 DLEDACKLFLEI-QRKDVVTWNAMISGYAQHGK---GEKALRLFDKMKDEGMKPDSITFV 303
            L++A ++      + D V W  ++     H     GE A+R   ++   G         
Sbjct: 754 KLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGD------ 807

Query: 304 ALLLACNHAGLVDL-GIQYFDSMVNDYGIAAKP 335
            +LL+  +A   DL G+     ++   GI   P
Sbjct: 808 CVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTP 840


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/539 (37%), Positives = 305/539 (56%), Gaps = 40/539 (7%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ AA + F+R+P ++  SWN +  G+++  ++  AR LF  MPE+N  +W+AM++G   
Sbjct: 157 DLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTN 216

Query: 114 CGQLDKAVELF--------------------------KVAPVKSVVAW------------ 135
            G  ++++  F                           V   + V A+            
Sbjct: 217 LGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCV 276

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            +++   YM+ G +   E +   +P+ ++V+ N +IAG  +N  +E  L+   MM  +G+
Sbjct: 277 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 336

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
             +  +  S +  CS L++L  G+Q+H  V K+ + K    +T L+ MY +CG L D+ +
Sbjct: 337 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 396

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F      D    +AMIS Y  HG G+KA+ LF +M + G +P  +TF+ALL AC+H+GL
Sbjct: 397 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGL 456

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            + G+  F+ M   YG+     HYTC+VDLLGR+G L EA  LI  MP  P   I+ TLL
Sbjct: 457 KEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLL 516

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           SAC+  K  D+AE  A  +  L+P ++A  YV L+NI A  ++W DV+ +R +M++NNV 
Sbjct: 517 SACKTQKNFDMAERIAKRVIELDPHDSAS-YVLLSNIRATSRRWGDVSEVRKAMRDNNVR 575

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K PG SW+E+   +H+F +GD  HP    I E L+E+  +++  GY PD+   LH + +E
Sbjct: 576 KEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE 635

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
            KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  REI+VRD
Sbjct: 636 EKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 1/241 (0%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
           Y + G L  A ELF+  P ++V++W  +  GY+K G +  A KLFDEMP +N+ TWNAM+
Sbjct: 152 YADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMV 211

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           AG     + E+ L     M   G+ P+   L SV   C+ L  +  G+QVH  V +S L 
Sbjct: 212 AGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLD 271

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    + L  MY +CG L++   +   +    +V+ N +I+G  Q+G  E AL  F  M
Sbjct: 272 RDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMM 331

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
           +  G+  D +TFV+ + +C+    +  G Q     V   G+       TC+V +  R G 
Sbjct: 332 RSVGVAADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGC 390

Query: 351 L 351
           L
Sbjct: 391 L 391



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 43/200 (21%)

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           A   S +   C  L  L   +Q+H     S    D      L+  Y   GDL  A +LF 
Sbjct: 110 ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 166

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDK---------------------------- 289
            I R++V++WN +  GY ++G    A +LFD+                            
Sbjct: 167 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 226

Query: 290 ---MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
              M+ EGM PD     ++   C  AGL D+        V+ Y + +  D   C+   L 
Sbjct: 227 FLDMRREGMHPDEFGLGSVFRCC--AGLRDV---VTGRQVHAYVVRSGLDRDMCVGSSLA 281

Query: 347 ----RAGKLVEAVDLIKKMP 362
               R G L E   +++ +P
Sbjct: 282 HMYMRCGCLQEGEAVLRMLP 301



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 124/302 (41%), Gaps = 35/302 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S LA    + G L++ + +   +P   +VS N +++    N D   A   F     +  
Sbjct: 277 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 336

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            A   T +S      ++A                  A+  G    GQ+ KA  + KV PV
Sbjct: 337 AADVVTFVSAISSCSDLA------------------ALAQGQQIHGQVMKA-GVDKVVPV 377

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
                 T ++  Y + G +  +E++F      +    +AMI+ Y  +   +  ++L + M
Sbjct: 378 -----MTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 432

Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCK 245
           +  G  P+  +  ++L  CSH    + G    +L+ K+    P  K  T +  L+    +
Sbjct: 433 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLG---R 489

Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFV 303
            G L++A  L L +    D V W  ++S        + A R+  ++ +  + P DS ++V
Sbjct: 490 SGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIE--LDPHDSASYV 547

Query: 304 AL 305
            L
Sbjct: 548 LL 549


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 277/438 (63%), Gaps = 3/438 (0%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLG 193
           T ++  Y +FG V  A  +F  MP KN+V+W+AMIA Y +N      L+L ++M+     
Sbjct: 218 TTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACD 277

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
             PN  ++ SVL  C+ L++L+ GK VH  V +  L      L  LI+MY +CG++    
Sbjct: 278 TVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQ 337

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           ++F  ++++DV++WN++IS Y  HG G+KA+++F+ M + G+ P  ITF+ +L AC+HAG
Sbjct: 338 RVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAG 397

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LV+     F+SM+N Y I  + +HY CMVD+LGRA +L EA++LI+ M FKP P ++G+L
Sbjct: 398 LVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSL 457

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L +CR+H  ++LAE A+  LF L P N AG YV L++IYA  + W+DV R+R  ++   +
Sbjct: 458 LGSCRIHCNVELAERASAMLFELEPKN-AGNYVLLSHIYAKSRMWNDVRRVRKQLESRGL 516

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K+P  SWIEV   ++   S +  +P++  +   L  L   +K  GYVP      + + E
Sbjct: 517 QKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDE 576

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
           E KE+++L HS KLA+AFGLI    G  IR+  NLR+C DCH   K++S    REI++RD
Sbjct: 577 EEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRD 636

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFH FKDG CSCGDYW
Sbjct: 637 VNRFHCFKDGVCSCGDYW 654



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 66  PIKDTASWNT--MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE- 122
           P KD  S N   +I    +  N+ +A  L    P     ++  +I+  IE   L   V+ 
Sbjct: 37  PTKDIKSNNNDDLIQSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDV 96

Query: 123 ---LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
              L      +     T +I+ Y   G VD A K+FDE   K +  WNA+       S  
Sbjct: 97  HHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRG 156

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLS--SLQLGKQVHQLVFKSPLCKDTTA 235
           ED L L   M  +GI  N  + + VL  C  S LS   L+ GK++H  + +         
Sbjct: 157 EDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHV 216

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
           +T L+ +Y + G +  A  +F  +  K++V+W+AMI+ YA++    KAL LF  M  E  
Sbjct: 217 MTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEAC 276

Query: 296 K--PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
              P+ IT V++L AC     ++ G +   + V   G+ +       ++ + GR G++
Sbjct: 277 DTVPNPITMVSVLQACASLAALEHG-KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEI 333



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 3/172 (1%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P   +   ++  C   +SL  G  VH  +  S L +D    T LI+MYC  G ++ ACK+
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F E + K +  WNA+    A   +GE  L L+ +M   G+  +  T+  +L AC  + L 
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELS 191

Query: 316 DLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
              ++      + +  +G        T ++D+  R G +  A  +   MP K
Sbjct: 192 ICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK 243



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 116/245 (47%), Gaps = 30/245 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF--------DKIPQPDVVSYNIMLSC---ILLNS 52
           K  V+W++++A +AK    +K A ELF        D +P P +   +++ +C     L  
Sbjct: 243 KNIVSWSAMIACYAKNEMPMK-ALELFQIMMLEACDTVPNP-ITMVSVLQACASLAALEH 300

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +V A+   +R         NT+I+ + +   ++  + +F  M +++ +SW+++IS Y 
Sbjct: 301 GKLVHAY-VLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYG 359

Query: 113 ECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----- 161
             G   KA+++F+      V+P  S + +  ++      G V+ A+ LF+ M  K     
Sbjct: 360 MHGLGKKAIQIFENMINRGVSP--SYITFITVLCACSHAGLVEEAKILFESMLNKYRIHP 417

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            +  +  M+      +  ++ ++L++ M     +P  +   S+L  C    +++L ++  
Sbjct: 418 RMEHYACMVDILGRANRLDEAIELIQNM---DFKPGPTVWGSLLGSCRIHCNVELAERAS 474

Query: 222 QLVFK 226
            ++F+
Sbjct: 475 AMLFE 479



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 56/226 (24%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK--DTA-SWNTMI 77
           G +  A  +F  +P  ++VS++ M++C   N +  + A + FQ + ++  DT  +  TM+
Sbjct: 228 GYVSYASSVFGAMPDKNIVSWSAMIACYAKN-EMPMKALELFQIMMLEACDTVPNPITMV 286

Query: 78  SGFVQKKNMAK------------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           S      ++A              R L   +P  N+     +I+ Y  CG++     +F 
Sbjct: 287 SVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNT-----LITMYGRCGEISTGQRVFD 341

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
               + V++W ++IS Y   G    A ++F+                             
Sbjct: 342 YMKKRDVISWNSLISIYGMHGLGKKAIQIFEN---------------------------- 373

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
              MI  G+ P+  +  +VL  CSH   ++  K    ++F+S L K
Sbjct: 374 ---MINRGVSPSYITFITVLCACSHAGLVEEAK----ILFESMLNK 412


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/421 (42%), Positives = 270/421 (64%), Gaps = 1/421 (0%)

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A+K+FDE P K+ VTW+AMI GY     +   + L R M   G+ P+  ++ SVL  C+ 
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
           L +L+LGK +   + +  + +       LI M+ KCGD++ A K+F E++ + +V+W +M
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
           I G A HG+G +A+ +FD+M ++G+ PD + F+ +L AC+H+GLVD G  YF++M N + 
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFS 465

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
           I  K +HY CMVD+L RAG++ EA++ ++ MP +P   I+ ++++AC     L L E  A
Sbjct: 466 IVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVA 525

Query: 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 450
             L    P++ +  YV L+NIYA + +W+   ++R  M    + K+PG + IE+   ++E
Sbjct: 526 KELIRREPSHESN-YVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYE 584

Query: 451 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 510
           F +GD+ H +   I+E ++E+ + +K AGYVP     L  + EE KE  L  HSEKLAIA
Sbjct: 585 FVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIA 644

Query: 511 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
           F L+  P GTPIR+ KNLRVC DCH ATK+IS +  REI+VRD  RFHHFK+G CSCGD+
Sbjct: 645 FALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDF 704

Query: 571 W 571
           W
Sbjct: 705 W 705



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 123/273 (45%), Gaps = 28/273 (10%)

Query: 30  FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           F++ P       ++   C    S   V+A   F   P+KD+ +W+ MI G+ +  N A+A
Sbjct: 258 FEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARA 317

Query: 90  RDLFLAMPEK----NSVSWSAMIS-----GYIECGQ-LDKAVELFKVAPVKSVVAWTAMI 139
             LF  M       + ++  +++S     G +E G+ L+  +E   +  ++SV    A+I
Sbjct: 318 VTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNI--MRSVELCNALI 375

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
             + K G VD A K+F EM  + +V+W +MI G   +    + + +   M+  G+ P+  
Sbjct: 376 DMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDV 435

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDA 252
           +   VL  CSH   +  G      +      ++  ++ P       ++ M  + G + +A
Sbjct: 436 AFIGVLSACSHSGLVDKGHYYFNTM------ENMFSIVPKIEHYGCMVDMLSRAGRVNEA 489

Query: 253 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKAL 284
            +    +    + V W ++++  A H +GE  L
Sbjct: 490 LEFVRAMPVEPNQVIWRSIVT--ACHARGELKL 520



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 25/156 (16%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK +V W++++ G+A+  G    A  LF ++    V    I +  +L    D+ A     
Sbjct: 295 VKDSVTWSAMIGGYARA-GNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGAL---- 349

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                 +   W   +  ++++KN+ ++ +L            +A+I  + +CG +D+AV+
Sbjct: 350 ------ELGKW---LESYIERKNIMRSVEL-----------CNALIDMFAKCGDVDRAVK 389

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           +F+   V+++V+WT+MI G    G+   A  +FDEM
Sbjct: 390 VFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEM 425


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 318/578 (55%), Gaps = 19/578 (3%)

Query: 11  SVLAGFAKQRGKLK-DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           S+L G    R   K  A  L +       +S  ++  C +  S  +  A   F R+    
Sbjct: 28  SLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQ 87

Query: 70  TASWNTMISGFVQKKNMAKARDLFL-------AMPEKNSVSWSAMISGYIECGQLDKAVE 122
           T +WN+MI GF Q  +  + + +         +    ++ ++S ++    E  +  K  E
Sbjct: 88  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 147

Query: 123 ----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
               + +    + VV  T +I  Y   G ++ A K+F+EMP ++LV+WN+MI+ Y +   
Sbjct: 148 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 207

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ LK+   M    +  +  +L S+L  C+H+ +L +G Q+H+   +  L ++      
Sbjct: 208 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNA 267

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI MY KCG L  A  +F  + ++DV TWN+MI GY  HG+G++A+  F  M   G++P+
Sbjct: 268 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 327

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           SITF+ LL  C+H GLV  G+QYF  M +++ +     HY CMVDL GRAGKL EA+++I
Sbjct: 328 SITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVI 387

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           +  P +  P ++ TLL +C++H+ +++ E A  NL  L    A  C V L+ IYA  K  
Sbjct: 388 RSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC-VLLSGIYAEAKDL 446

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
             VAR+R  ++   +   PG+SWIEVG  VH F   D+ HP+   I+ KL+E+  R  L 
Sbjct: 447 QGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLV 506

Query: 479 GYVPDLEFALHAVGEEVKEQLLL-----FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           GY  + E +L A  E   ++        +HSEKLAIA+GL + P GT + + KNLRVC D
Sbjct: 507 GYAME-ESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRD 565

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH  TK++S    REIIVRD  RFHHFK G CSC ++W
Sbjct: 566 CHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/635 (36%), Positives = 329/635 (51%), Gaps = 91/635 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
            TT +WN+ L   A+QR   ++A  L+                C +L S D   AF F  
Sbjct: 19  NTTASWNARLRELARQR-HFQEALNLY----------------CQMLASGDSPNAFTFPF 61

Query: 62  -FQR-----LPIKDTA---------------SWNTMISGFVQKKNMAKARDLFLAMPEKN 100
            F+      LP+  +                   ++IS + +   +A AR +F       
Sbjct: 62  AFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSR 121

Query: 101 --SVSWSAMISGYIECGQLDKAVELFK---------------------VAPVK------- 130
             +V ++A+I+GY    +   AV LF+                       P+        
Sbjct: 122 NLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSL 181

Query: 131 -----------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                       +     +++ Y++ G VD A KLFD MP K L+TWNAMI+GY +N  A
Sbjct: 182 HACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLA 241

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
              L L R M   GI P+  +L  VL  C+HL +   G++V Q +  S    +      L
Sbjct: 242 GHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNAL 301

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I+MY +CG+L  A  +F  +  K+V++W A+I+GY  HG+GE A++LFD+M      PD 
Sbjct: 302 INMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDG 361

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
             FV++L AC+HAGL + G+ YF +M  DYG+   P+HY+C+VDLLGRAG+L EA  LI 
Sbjct: 362 AAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIG 421

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            M  +P  A++G LL AC++H+ ++LAE A   +    P N  G YV L+NI++     +
Sbjct: 422 SMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTN-IGYYVLLSNIFSEAGNME 480

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
            + R+R+ M+E  + K PG S++E    +H F +GDR HP+   I+  L  LE  +K  G
Sbjct: 481 GILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRG 540

Query: 480 YVPDLEFALHAVGEEVKEQLLL---FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
              D +       E   E+L+     HSEKLAIAFGLI    GT I V KNLRVCGDCH 
Sbjct: 541 GSNDND------QESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHL 594

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             K +S I  R+++VRD TRFHHFK+G CSC DYW
Sbjct: 595 FLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 14/134 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK------IPQPDVVSYNIMLSCILLNSDD 54
           M  K  + WN++++G+A Q G      +L+ K      +P P V    ++ SC  L +  
Sbjct: 220 MPEKGLITWNAMISGYA-QNGLAGHVLDLYRKMEFTGIVPDP-VTLVGVLSSCAHLGAH- 276

Query: 55  VVAAFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
             A  +  QR+ +     +    N +I+ + +  N+ KAR +F  M EKN +SW+A+I+G
Sbjct: 277 -AAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAG 335

Query: 111 YIECGQLDKAVELF 124
           Y   GQ + AV+LF
Sbjct: 336 YGMHGQGELAVQLF 349


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/537 (38%), Positives = 293/537 (54%), Gaps = 40/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA------ 127
            +++S + +   + +A+ +F  MP  ++V W+A+I+ Y++ G L +AV + + A      
Sbjct: 110 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 128 ---------------------------------PVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                              +SV   TA +  Y+K G++  A ++
Sbjct: 170 PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 229

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD+M  K+ V W AM+ GY  N    + L L   M   G++P+  +++  L  C+ L +L
Sbjct: 230 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 289

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
            LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ WNAMI G 
Sbjct: 290 DLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGL 349

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
              G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M   Y I+ +
Sbjct: 350 GMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPR 409

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            +HY CMVDLL RAG L EA  L+  MP      I G LL  C++H+  +LAE     L 
Sbjct: 410 IEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLI 469

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L P N +G YV L+NIY+   +W+D A++RL MK   V K+P  SW+E    VHEFR G
Sbjct: 470 LLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVG 528

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKLAIAF L+
Sbjct: 529 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLL 588

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
               G  IRV KNLRVC DCH A K +S I  REIIVRD  RFH F+DG+CSC DYW
Sbjct: 589 ITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 13/227 (5%)

Query: 196 PNASSLSS--VLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+S+Y KCG L  A
Sbjct: 66  PNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRA 125

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F E+     V W A+I+ Y   G   +A+ +       GM+PDS T V +L AC  A
Sbjct: 126 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC--A 183

Query: 313 GLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            + DL   +         G+A      T  VDL  + G++ +A ++  KM  K   A +G
Sbjct: 184 RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-WG 242

Query: 372 TLLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
            ++   A   H R  L  F AM    + P     CY     + A  +
Sbjct: 243 AMVGGYASNGHPREALDLFLAMQAEGMKP----DCYAVAGALSACTR 285



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 16/250 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++  A + F ++  KD  +W  M+ G+    +  +A DLFLAM  +    +  + +  +S
Sbjct: 222 EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 281

Query: 110 GYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G LD   +  ++      + + V  TA+I  Y K G    A  +F +M  K+++ 
Sbjct: 282 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV 341

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VH 221
           WNAMI G       +    L+  M   G++ N ++   +L  C+H   +Q G++    + 
Sbjct: 342 WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMT 401

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
           +L   SP  +    +  L+S   + G L++A +L  ++    + V   A++ G   H   
Sbjct: 402 KLYHISPRIEHYGCMVDLLS---RAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 458

Query: 281 EKALRLFDKM 290
           E A  +  ++
Sbjct: 459 ELAEHVLKQL 468


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/641 (32%), Positives = 346/641 (53%), Gaps = 81/641 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L+ ++   G+ KDA+ +F ++P+ D++S+N ML+C + +   + A   F + L +K 
Sbjct: 300 NTLLSVYSDA-GRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKK 358

Query: 70  TASW--------------------------------------NTMISGFVQKKNMAKARD 91
             ++                                      NT+I+ + +   MA+A+ 
Sbjct: 359 EINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKK 418

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA------------------------ 127
           +F  MP+ + V+W+A+I G+    +L++AV  FK+                         
Sbjct: 419 VFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHE 478

Query: 128 -------PVKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
                  P+ +    T          ++I+ Y K G +  +  +FD++  K    WNA+I
Sbjct: 479 DLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAII 538

Query: 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
           A      + E+ LKL+  M   GI  +  + S+ L   + L+ L+ G+Q+H    K    
Sbjct: 539 AANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFE 598

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            D   +   + MY KCG+L+DA ++  +   +  ++WN +IS  A+HG+  KA   F  M
Sbjct: 599 LDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDM 658

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
              G+KP+ ++FV LL AC+H GLVD G+ Y+ SM + YGI    +H  CM+DLLGR+G+
Sbjct: 659 LKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGR 718

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410
           LVEA   I +MP  P   ++ +LL++CR+++ LDL   AA +L  L+P++ +  YV  +N
Sbjct: 719 LVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSA-YVLYSN 777

Query: 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470
           ++A + +W+DV  +R  M  + + K P +SW++    +  F  GD+ HP++  I+ KL  
Sbjct: 778 VFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLG 837

Query: 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           L K +  AGYVPD  ++L    EE KE  +  HSE++A+AFGLI +P G+ +R+FKNLRV
Sbjct: 838 LMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRV 897

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CGDCH   K++S +  R+I++RD  RFHHF +G CSC DYW
Sbjct: 898 CGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 151/310 (48%), Gaps = 10/310 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQL 117
           F R+  ++ ASWN M+SG+V+  +  +A    RD+     + +    +++++   +   +
Sbjct: 15  FDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIASLVTACNKSSIM 74

Query: 118 DKAVELF-----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            K    F     K   +  V   T+ +  Y  +G V  A+K+F+EMP +N+V+W +++  
Sbjct: 75  AKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVS 134

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           Y +N   ++ +   + M   GI  N ++++ V+  C  L  + LG Q+     K  L   
Sbjct: 135 YSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETK 194

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
            +A   LI M+  CGD+ +AC +F E+  +D ++WN++IS  AQ+   E++ R F  M+ 
Sbjct: 195 VSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRL 254

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
              + +  T   LL  C     +  G +    +   YG+ +       ++ +   AG+  
Sbjct: 255 VHEEINYTTLSILLSICGSVDYLKWG-KGVHGLAVKYGLESNICLCNTLLSVYSDAGRSK 313

Query: 353 EAVDLIKKMP 362
           +A  + ++MP
Sbjct: 314 DAELIFRRMP 323



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 113/532 (21%), Positives = 222/532 (41%), Gaps = 90/532 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           M+ +   +WN +++G+ +  G   +A   F  I    +     M++ ++   N   ++A 
Sbjct: 18  MSERNEASWNHMMSGYVRV-GSYVEAVLFFRDICGIGIKPSGFMIASLVTACNKSSIMAK 76

Query: 59  FDF-FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             F F    IK     D     + +  +     ++ A+ +F  MP++N VSW++++  Y 
Sbjct: 77  EGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYS 136

Query: 113 ECGQLDKAVELFK-------------VAPVKS--------------------------VV 133
           + G   + +  +K             +A V S                          V 
Sbjct: 137 DNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVS 196

Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           A  ++I  +   G ++ A  +F+EM  ++ ++WN++I+   +N+  E+  +    M  + 
Sbjct: 197 AANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVH 256

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
              N ++LS +L  C  +  L+ GK VH L  K  L  +      L+S+Y   G  +DA 
Sbjct: 257 EEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAE 316

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC---- 309
            +F  +  +D+++WN+M++ Y Q G+   AL++F +M     + + +TF + L AC    
Sbjct: 317 LIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPE 376

Query: 310 -------NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
                   H  +V LG+Q  D ++              ++   G+  K+ EA  + ++MP
Sbjct: 377 FFTNGKILHGFVVVLGLQ--DELIIG----------NTLITFYGKCHKMAEAKKVFQRMP 424

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC-YVQLANIYAAMKKWDDV 421
            K     +  L+     +  L+ A  AA  L  +   + +G  Y+ + NI  +    +D+
Sbjct: 425 -KLDKVTWNALIGGFANNAELNEA-VAAFKL--MREGSTSGVDYITIVNILGSCLTHEDL 480

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
            +  +               I   TVV  F     V   L++++ K  +L  
Sbjct: 481 IKYGIP--------------IHAHTVVTGFDLDQHVQSSLITMYAKCGDLHS 518



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 18/336 (5%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMIS 109
           D+  A   F  +  +DT SWN++IS   Q     ++   F    L   E N  + S ++S
Sbjct: 210 DINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLS 269

Query: 110 GYIECGQLD-----KAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
               CG +D     K V     K     ++     ++S Y   G+   AE +F  MP ++
Sbjct: 270 ---ICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERD 326

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           L++WN+M+A YV++      LK+   M+ +    N  + +S L  C        GK +H 
Sbjct: 327 LISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHG 386

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            V    L  +      LI+ Y KC  + +A K+F  + + D VTWNA+I G+A + +  +
Sbjct: 387 FVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNE 446

Query: 283 ALRLFDKMKDEGMKP-DSITFVALLLAC-NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
           A+  F  M++      D IT V +L +C  H  L+  GI      V   G        + 
Sbjct: 447 AVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVT-GFDLDQHVQSS 505

Query: 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           ++ +  + G L  +  +  ++ FK   +++  +++A
Sbjct: 506 LITMYAKCGDLHSSSYIFDQLVFKTS-SVWNAIIAA 540



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
           Y KFG+++ A+ +FD M  +N  +WN M++GYV      + +   R + G+GI+P+   +
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 202 SSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
           +S++  C+  S + + G Q H    K  L  D    T  +  Y   G + +A K+F E+ 
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
            ++VV+W +++  Y+ +G  ++ +  + +M+ EG+  +      ++ +C     + LG Q
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
                +  +G+  K      ++ + G  G + EA  +  +M
Sbjct: 182 LLGHALK-FGLETKVSAANSLIFMFGGCGDINEACSIFNEM 221



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 51/121 (42%)

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY K G +  A  +F  +  ++  +WN M+SGY + G   +A+  F  +   G+KP    
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
             +L+ ACN + ++      F       G+       T  V      G +  A  +  +M
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 362 P 362
           P
Sbjct: 121 P 121


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 327/592 (55%), Gaps = 78/592 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G+L+DAQ++FD+    DVVSY                            
Sbjct: 113 HTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYT--------------------------- 145

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK---- 125
                 +I+G+  +  +  A+ +F  +P K+ VSW+AMISGY E G   KA+ELFK    
Sbjct: 146 -----ALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMK 200

Query: 126 --VAPVKSVVA--------------------W-------------TAMISGYMKFGKVDL 150
             V P +S +A                    W              A+I  Y K G+V+ 
Sbjct: 201 TNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVET 260

Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           A +L + +  K++++WN +I GY   +  ++ L L + M+  G  PN  ++ S+L  C+H
Sbjct: 261 ACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 320

Query: 211 LSSLQLGKQVHQLV---FKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQ-RKDVV 265
           L ++ +G+ +H  +    K  +  + ++L T LI MY KCGD++ A ++       + + 
Sbjct: 321 LGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLS 380

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           TWNAMI G+A HG+   A  +F +M+  G++PD ITFV LL AC+H+G++DLG   F SM
Sbjct: 381 TWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 440

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
             DY I  K +HY CM+DLLG +G   EA ++I  MP +P   I+ +LL AC++H  L+L
Sbjct: 441 RQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLEL 500

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV-VKMPGYSWIEV 444
            E  A  L  + P N  G YV L+NIYA   KW++V +IR  + +  +  K+PG S IE+
Sbjct: 501 GESFAKKLIKIEPEN-PGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEI 559

Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
            +VVHEF  GD++HP+   I+  L+E+E  ++ AG+VPD    L  + EE KE  L  HS
Sbjct: 560 DSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 619

Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
           EKLAIAFGLI    GT + + KNLRVC +CH ATK IS I KREII RD TR
Sbjct: 620 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 32/251 (12%)

Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
           F  +  A  +F+ +P  N + WN M  G+  +S     LKL  +MI LG+ PN  +   +
Sbjct: 22  FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFL 81

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K+F     +DV
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 265 VTWNA-------------------------------MISGYAQHGKGEKALRLFDKMKDE 293
           V++ A                               MISGYA+ G  +KAL LF +M   
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            +KPD  T   ++ AC  +G ++LG Q   S +ND+G  +       ++DL  + G++  
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEVET 260

Query: 354 AVDLIKKMPFK 364
           A +L++ +  K
Sbjct: 261 ACELLEGLSNK 271


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 318/578 (55%), Gaps = 19/578 (3%)

Query: 11  SVLAGFAKQRGKLK-DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           S+L G    R   K  A  L +       +S  ++  C +  S  +  A   F R+    
Sbjct: 10  SLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQ 69

Query: 70  TASWNTMISGFVQKKNMAKARDLFL-------AMPEKNSVSWSAMISGYIECGQLDKAVE 122
           T +WN+MI GF Q  +  + + +         +    ++ ++S ++    E  +  K  E
Sbjct: 70  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 129

Query: 123 ----LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
               + +    + VV  T +I  Y   G ++ A K+F+EMP ++LV+WN+MI+ Y +   
Sbjct: 130 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 189

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
            E+ LK+   M    +  +  +L S+L  C+H+ +L +G Q+H+   +  L ++      
Sbjct: 190 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNA 249

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI MY KCG L  A  +F  + ++DV TWN+MI GY  HG+G++A+  F  M   G++P+
Sbjct: 250 LIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPN 309

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
           SITF+ LL  C+H GLV  G+QYF  M +++ +     HY CMVDL GRAGKL EA+++I
Sbjct: 310 SITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVI 369

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
           +  P +  P ++ TLL +C++H+ +++ E A  NL  L    A  C V L+ IYA  K  
Sbjct: 370 RSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC-VLLSGIYAEAKDL 428

Query: 419 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 478
             VAR+R  ++   +   PG+SWIEVG  VH F   D+ HP+   I+ KL+E+  R  L 
Sbjct: 429 QGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLV 488

Query: 479 GYVPDLEFALHAVGEEVKEQLLL-----FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
           GY  + E +L A  E   ++        +HSEKLAIA+GL + P GT + + KNLRVC D
Sbjct: 489 GYAME-ESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRD 547

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH  TK++S    REIIVRD  RFHHFK G CSC ++W
Sbjct: 548 CHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/440 (43%), Positives = 269/440 (61%), Gaps = 1/440 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   TA++  Y     +  A +LFDEMP +N VTWNA+I GY  N      +   R M+ 
Sbjct: 124 VYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLA 183

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G +P+  ++  VL  CSHL +   GK +H+ ++ + L  +    T LI MY KCG + +
Sbjct: 184 DGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYE 243

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
             K+F EI+ K+V TWN +ISGYA +G+G+ AL+ F +M  E  KPD +TF+ +L AC H
Sbjct: 244 VEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCH 303

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLV  G   F SM   +G+  + +HY CMVDLLGRAG L EA++LI+ M  +P P I+ 
Sbjct: 304 QGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWR 363

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL ACRVH    L E+    L  L P N    YV L+NIY+  ++W +V ++R  M   
Sbjct: 364 ALLCACRVHGNTKLGEYIIKRLIELEPNNGEN-YVLLSNIYSRERRWAEVGKLRGMMNLR 422

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K+PG S IE+  VV+EF + +   PE  +I+++L  L K++K  GYV   + AL+ +
Sbjct: 423 GIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDI 482

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +E KE  +++HSEKLA+AFGL+  PL   +R+ KNLR+C DCH   K +S + KR I+V
Sbjct: 483 EKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVV 542

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHF +G CSC DYW
Sbjct: 543 RDRNRFHHFYEGFCSCRDYW 562



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+MI  Y++ +   + L +  +M    I P++S+  +VL   + L    +GK +H +V +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T L+ +YC C  + DA +LF E+  ++ VTWNA+I+GY  + K  KA+  
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M  +G +P   T V +L AC+H G  + G ++    +    +       T ++D+  
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
           + G + E   + +++  K     +  L+S   ++ + D  L  F+ M + N  P
Sbjct: 237 KCGAVYEVEKVFEEIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKP 289



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 48/286 (16%)

Query: 43  IMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------ 96
           + L C  L+  D    FD    +P ++  +WN +I+G+   +   KA D F  M      
Sbjct: 131 VHLYCTCLSISDASQLFD---EMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQ 187

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAE 152
           P + +V    ++S     G  ++   + +         +V   TA+I  Y K G V   E
Sbjct: 188 PSERTVV--VVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVE 245

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           K+F+E+  KN+ TWN +I+GY  N   +  L+    M+    +P+  +   VL  C H  
Sbjct: 246 KVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQG 305

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
            +  G+      ++    K    L P I  Y                          M+ 
Sbjct: 306 LVTEGR------WQFMSMKQQFGLQPRIEHY------------------------GCMVD 335

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
              + G  E+AL L   M    ++PD I + ALL AC   G   LG
Sbjct: 336 LLGRAGLLEEALELIQSM---SIEPDPIIWRALLCACRVHGNTKLG 378


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/440 (43%), Positives = 269/440 (61%), Gaps = 1/440 (0%)

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           V   TA++  Y     +  A +LFDEMP +N VTWNA+I GY  N      +   R M+ 
Sbjct: 124 VYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLA 183

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            G +P+  ++  VL  CSHL +   GK +H+ ++ + L  +    T LI MY KCG + +
Sbjct: 184 DGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYE 243

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
             K+F EI+ K+V TWN +ISGYA +G+G+ AL+ F +M  E  KPD +TF+ +L AC H
Sbjct: 244 VEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCH 303

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            GLV  G   F SM   +G+  + +HY CMVDLLGRAG L EA++LI+ M  +P P I+ 
Sbjct: 304 QGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWR 363

Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
            LL ACRVH    L E+    L  L P N    YV L+NIY+  ++W +V ++R  M   
Sbjct: 364 ALLCACRVHGNTKLGEYIIKRLIELEPNNGEN-YVLLSNIYSRERRWAEVGKLRGMMSLR 422

Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
            + K+PG S IE+  VV+EF + +   PE  +I+++L  L K++K  GYV   + AL+ +
Sbjct: 423 GIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDI 482

Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
            +E KE  +++HSEKLA+AFGL+  PL   +R+ KNLR+C DCH   K +S + KR I+V
Sbjct: 483 EKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVV 542

Query: 552 RDTTRFHHFKDGTCSCGDYW 571
           RD  RFHHF +G CSC DYW
Sbjct: 543 RDRNRFHHFYEGFCSCRDYW 562



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+MI  Y++ +   + L +  +M    I P++S+  +VL   + L    +GK +H +V +
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                D    T L+ +YC C  + DA +LF E+  ++ VTWNA+I+GY  + K  KA+  
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           F  M  +G +P   T V +L AC+H G  + G ++    +    +       T ++D+  
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTALIDMYA 236

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
           + G + E   + +++  K     +  L+S   ++ + D  L  F+ M + N  P
Sbjct: 237 KCGAVYEVEKVFEEIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKP 289



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 48/286 (16%)

Query: 43  IMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------ 96
           + L C  L+  D    FD    +P ++  +WN +I+G+   +   KA D F  M      
Sbjct: 131 VHLYCTCLSISDASQLFD---EMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQ 187

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAE 152
           P + +V    ++S     G  ++   + +         +V   TA+I  Y K G V   E
Sbjct: 188 PSERTVV--VVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVE 245

Query: 153 KLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           K+F+E+  KN+ TWN +I+GY  N   +  L+    M+    +P+  +   VL  C H  
Sbjct: 246 KVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQG 305

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
            +  G+      ++    K    L P I  Y                          M+ 
Sbjct: 306 LVTEGR------WQFMSMKQQFGLQPRIEHY------------------------GCMVD 335

Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
              + G  E+AL L   M    ++PD I + ALL AC   G   LG
Sbjct: 336 LLGRAGLLEEALELIQSM---SIEPDPIIWRALLCACRVHGNTKLG 378


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/542 (38%), Positives = 308/542 (56%), Gaps = 31/542 (5%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           +P PD  S N +L     ++   +A     +RL   DT ++  ++    +          
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTR---------- 132

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAE 152
            LA+ E  S+   A  +G                  V  V    +++  Y   G  + A 
Sbjct: 133 LLALREGESLHAEAAKNGL-----------------VALVFVKNSLVHHYGACGLFESAH 175

Query: 153 KLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
           ++FDE+P   +NLV+WN+++ G+  N    + L + R  +   + P+  ++ SVL  C+ 
Sbjct: 176 RVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAE 235

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNA 269
           + +L LG++VH    K  L  ++     LI +Y KCG +EDA K+F E+   + VV+W +
Sbjct: 236 IGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTS 295

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           +I G A +G G+ AL LF  M+ E + P  IT V +L AC+H GLVD G +YF+ M + Y
Sbjct: 296 LIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKY 355

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
           GIA   +H  CMVDLLGRAG++ EA + I  MP +P   ++ TLL AC +HK+L+L E A
Sbjct: 356 GIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAA 415

Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
              L  L+P ++ G YV L+N+YAA+ +W D   +R +M  + V K PG+S +E+   V+
Sbjct: 416 WARLVELDPGHS-GDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVY 474

Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
           EF  GDR HPE   I++ L E+ +R++  GYVP     L  + EE KE  L +HSE+LAI
Sbjct: 475 EFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAI 534

Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           AF L+K   G+PIR+ KNLR+CGDCH   K IS +  REIIVRD +RFHHFK G CSC D
Sbjct: 535 AFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKD 594

Query: 570 YW 571
           YW
Sbjct: 595 YW 596


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/519 (39%), Positives = 310/519 (59%), Gaps = 18/519 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F ++  KD  SW  MISG+ +     KA + +  M  +    + ++ ++++S     G L
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 118 DKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
           DK + L + A        V+   ++I  Y K   +D A ++F  +P KN+++W ++I G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
             N  + + L   + MI L ++PN+ +L SVL  C+ + +L  GK++H    ++ L  D 
Sbjct: 474 RLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG 532

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY +CG +E A   F   + KDV +WN +++GYAQ GKG  A+ LF KM + 
Sbjct: 533 FLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + PD ITF +LL AC+ +G+V  G++YF+SM + + IA    HY  +VDLLGRAG+L +
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A + IKKMP  P PAI+G LL+ACR+++ ++L E AA ++F ++   + G Y+ L N+YA
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD-TKSVGYYILLCNLYA 710

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
              KWD+VAR+R  M+EN +   PG SW+EV   VH F +GD  HP++  I+  L+   +
Sbjct: 711 DSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYE 770

Query: 474 RMKLAGYVPDLEFALHAVGEEV---KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 530
           +M+  G    L  +  +  +++   K ++   HSE+LAIAFGLI    GTPI V KNL +
Sbjct: 771 KMEATG----LSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYM 826

Query: 531 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
           C +CH   K+IS + +R I VRDT +FHHFKDG CSCGD
Sbjct: 827 CENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 175/361 (48%), Gaps = 45/361 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           N ++S FV+  ++ +A  +F  M E++  SW+ ++ GY + G  D+A+ L+         
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 125 ------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                         +      V    A+I+ Y+K G +  A  +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD MP ++ ++WNAMI+GY EN    +GL+L  MM    + P+  +++SV+  C  L   
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           +LG++VH  V K+    + +    LI M+   G  ++A  +F +++ KD+V+W AMISGY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
            ++G  EKA+  +  M+ EG+ PD IT  ++L AC   GL+D GI       +  G+ + 
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM-LHEFADRTGLTSY 431

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
                 ++D+  +   + +A+++  ++P K   +    +L       RL+   F A+  F
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL-----RLNYRSFEALFFF 486

Query: 395 N 395
            
Sbjct: 487 Q 487



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 48/364 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIML-SC-------- 47
           M  +   +WN ++ G+AK  G   +A  L+ ++     +PDV ++  +L +C        
Sbjct: 155 MAERDLFSWNVLVGGYAKA-GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR 213

Query: 48  -------------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                    + +   D+ +A   F R+P +D  SWN MISG+ +
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFE 273

Query: 83  KKNMAKARDLFLAMPE----KNSVSWSAMISGYIECG--QLDKAVE--LFKVAPVKSVVA 134
                +   LF  M E     + ++ +++IS     G  +L + V   + K   V  V  
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSV 333

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             ++I  +   G  D AE +F +M  K+LV+W AMI+GY +N   E  ++   +M   G+
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +++SVL  C+ L  L  G  +H+   ++ L         LI MY KC  ++ A +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  I  K+V++W ++I G   + +  +AL  F +M    +KP+S+T V++L AC   G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGA 512

Query: 315 VDLG 318
           +  G
Sbjct: 513 LSCG 516


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/537 (38%), Positives = 293/537 (54%), Gaps = 40/537 (7%)

Query: 74   NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA------ 127
             +++S + +   + +A+ +F  MP  ++V W+A+I+ Y++ G L +AV + + A      
Sbjct: 565  TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 624

Query: 128  ---------------------------------PVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                               +SV   TA +  Y+K G++  A ++
Sbjct: 625  PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 684

Query: 155  FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
            FD+M  K+ V W AM+ GY  N    + L L   M   G++P+  +++  L  C+ L +L
Sbjct: 685  FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 744

Query: 215  QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ WNAMI G 
Sbjct: 745  DLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGL 804

Query: 275  AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
               G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M   Y I+ +
Sbjct: 805  GMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPR 864

Query: 335  PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
             +HY CMVDLL RAG L EA  L+  MP      I G LL  C++H+  +LAE     L 
Sbjct: 865  IEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLI 924

Query: 395  NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
             L P N +G YV L+NIY+   +W+D A++RL MK   V K+P  SW+E    VHEFR G
Sbjct: 925  LLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVG 983

Query: 455  DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
            D+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKLAIAF L+
Sbjct: 984  DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLL 1043

Query: 515  KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
                G  IRV KNLRVC DCH A K +S I  REIIVRD  RFH F+DG+CSC DYW
Sbjct: 1044 ITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 196 PNASSLSS--VLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+S+Y KCG L  A
Sbjct: 521 PNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRA 580

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F E+     V W A+I+ Y   G   +A+ +       GM+PDS T V +L AC  A
Sbjct: 581 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC--A 638

Query: 313 GLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            + DL   +         G+A      T  VDL  + G++ +A ++  KM  K   A +G
Sbjct: 639 RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-WG 697

Query: 372 TLLS--ACRVHKRLDLAEFAAMNLFNLNP 398
            ++   A   H R  L  F AM    + P
Sbjct: 698 AMVGGYASNGHPREALDLFLAMQAEGMKP 726



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 16/250 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++  A + F ++  KD  +W  M+ G+    +  +A DLFLAM  +    +  + +  +S
Sbjct: 677 EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 736

Query: 110 GYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G LD   +  ++      + + V  TA+I  Y K G    A  +F +M  K+++ 
Sbjct: 737 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV 796

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VH 221
           WNAMI G       +    L+  M   G++ N ++   +L  C+H   +Q G++    + 
Sbjct: 797 WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMT 856

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
           +L   SP  +    +  L+S   + G L++A +L  ++    + V   A++ G   H   
Sbjct: 857 KLYHISPRIEHYGCMVDLLS---RAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 913

Query: 281 EKALRLFDKM 290
           E A  +  ++
Sbjct: 914 ELAEHVLKQL 923


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/640 (34%), Positives = 348/640 (54%), Gaps = 80/640 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN---------------------IMLSCI 48
           NS++A + K + ++  A+++FD++ + DV+S+N                     +++S I
Sbjct: 83  NSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI 141

Query: 49  LLNSDDVVAAF------------DFFQRLPIKDTAS-----WNTMISGFVQKKNMAKARD 91
            ++   +V+ F                 + +K   S      NT++  + +  ++  A+ 
Sbjct: 142 EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 201

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----------------- 128
           +F  M +++ VS+++MI+GY   G   +AV+LF+      ++P                 
Sbjct: 202 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 261

Query: 129 ---VKSVVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
               K V  W              A++  Y K G +  AE +F EM  K++++WN +I G
Sbjct: 262 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 321

Query: 173 YVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           Y +N +A + L L  +++      P+  +++ VL  C+ LS+   G+++H  + ++    
Sbjct: 322 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 381

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+ MY KCG L  A  LF +I  KD+V+W  MI+GY  HG G++A+ LF++M+
Sbjct: 382 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 441

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++ D I+FV+LL AC+H+GLVD G ++F+ M ++  I    +HY C+VD+L R G L
Sbjct: 442 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 501

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           ++A   I+ MP  P   I+G LL  CR+H  + LAE  A  +F L P N  G YV +ANI
Sbjct: 502 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN-TGYYVLMANI 560

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA  +KW+ V R+R  + +  + K PG SWIE+   V+ F +GD  +PE  +I   L+++
Sbjct: 561 YAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKV 620

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             RM   GY P  ++AL    E  KE+ L  HSEKLA+A G+I    G  IRV KNLRVC
Sbjct: 621 RARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 680

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K++S + +REI++RD+ RFH FKDG CSC  +W
Sbjct: 681 GDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 175/347 (50%), Gaps = 22/347 (6%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQL 117
           F  + I+    WN +++   +  + + +  LF  M     E +S ++S +   +     +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
               +L     K    +      ++++ Y+K  +VD A K+FDEM  +++++WN++I GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V N  AE GL +   M+  GI  + +++ SV  GC+    + LG+ VH +  K+   ++ 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY KCGDL+ A  +F E+  + VV++ +MI+GYA+ G   +A++LF++M++E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLV 352
           G+ PD  T  A+L  C    L+D G +  + +  ND G      +   ++D+  + G + 
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQ 298

Query: 353 EAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           EA  +  +M  K       I G     C  ++        A++LFNL
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANE--------ALSLFNL 337


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/640 (34%), Positives = 348/640 (54%), Gaps = 80/640 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN---------------------IMLSCI 48
           NS++A + K + ++  A+++FD++ + DV+S+N                     +++S I
Sbjct: 234 NSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI 292

Query: 49  LLNSDDVVAAF------------DFFQRLPIKDTAS-----WNTMISGFVQKKNMAKARD 91
            ++   +V+ F                 + +K   S      NT++  + +  ++  A+ 
Sbjct: 293 EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 352

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----------------- 128
           +F  M +++ VS+++MI+GY   G   +AV+LF+      ++P                 
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 412

Query: 129 ---VKSVVAW-------------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
               K V  W              A++  Y K G +  AE +F EM  K++++WN +I G
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472

Query: 173 YVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           Y +N +A + L L  +++      P+  +++ VL  C+ LS+   G+++H  + ++    
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532

Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
           D      L+ MY KCG L  A  LF +I  KD+V+W  MI+GY  HG G++A+ LF++M+
Sbjct: 533 DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMR 592

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
             G++ D I+FV+LL AC+H+GLVD G ++F+ M ++  I    +HY C+VD+L R G L
Sbjct: 593 QAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDL 652

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           ++A   I+ MP  P   I+G LL  CR+H  + LAE  A  +F L P N  G YV +ANI
Sbjct: 653 IKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN-TGYYVLMANI 711

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA  +KW+ V R+R  + +  + K PG SWIE+   V+ F +GD  +PE  +I   L+++
Sbjct: 712 YAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKV 771

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
             RM   GY P  ++AL    E  KE+ L  HSEKLA+A G+I    G  IRV KNLRVC
Sbjct: 772 RARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVC 831

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH   K++S + +REI++RD+ RFH FKDG CSC  +W
Sbjct: 832 GDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 194/389 (49%), Gaps = 25/389 (6%)

Query: 23  LKDAQELFDKIPQPD-VVSYNI--MLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           LKD +E+ + I     V+  N+   LS +  N  D+  A   F  + I+    WN +++ 
Sbjct: 110 LKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNE 169

Query: 80  FVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKS 131
             +  + + +  LF  M     E +S ++S +   +     +    +L     K    + 
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGER 229

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
                ++++ Y+K  +VD A K+FDEM  +++++WN++I GYV N  AE GL +   M+ 
Sbjct: 230 NSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV 289

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
            GI  + +++ SV  GC+    + LG+ VH +  K+   ++      L+ MY KCGDL+ 
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
           A  +F E+  + VV++ +MI+GYA+ G   +A++LF++M++EG+ PD  T  A+L  C  
Sbjct: 350 AKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR 409

Query: 312 AGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQP 367
             L+D G +  + +  ND G      +   ++D+  + G + EA  +  +M  K      
Sbjct: 410 YRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467

Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            I G     C  ++        A++LFNL
Sbjct: 468 TIIGGYSKNCYANE--------ALSLFNL 488



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 193/426 (45%), Gaps = 81/426 (19%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N  S L+      G LK+A  +FD++     + +NI+++  L  S D   +   F+++  
Sbjct: 130 NLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN-ELAKSGDFSGSIGLFKKMMS 188

Query: 68  K----DTASW-----------------------------------NTMISGFVQKKNMAK 88
                D+ ++                                   N++++ +++ + +  
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDS 248

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----------KVAPVKSVVAWTA- 137
           AR +F  M E++ +SW+++I+GY+  G  +K + +F           +A + SV A  A 
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCAD 308

Query: 138 ----------------------------MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
                                       ++  Y K G +D A+ +F EM  +++V++ +M
Sbjct: 309 SRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSM 368

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           IAGY     A + +KL   M   GI P+  ++++VL  C+    L  GK+VH+ + ++ L
Sbjct: 369 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL 428

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
             D      L+ MY KCG +++A  +F E++ KD+++WN +I GY+++    +AL LF+ 
Sbjct: 429 GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNL 488

Query: 290 MKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           + +E    PD  T   +L AC      D G +    ++ + G  +       +VD+  + 
Sbjct: 489 LLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKC 547

Query: 349 GKLVEA 354
           G L+ A
Sbjct: 548 GALLLA 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +++   N  +  + E+   E+ +KLL +     I P   +L SVL  C+   SL+ GK+V
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
              +  +    D+   + L  MY  CGDL++A ++F E++ +  + WN +++  A+ G  
Sbjct: 117 DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDF 176

Query: 281 EKALRLFDKMKDEGMKPDSITF 302
             ++ LF KM   G++ DS TF
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTF 198


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 304/520 (58%), Gaps = 19/520 (3%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLF---LAMPEKNSVSWSAMISGYIECGQL---- 117
           LP  D  S NT++  F        A  L    LA P+ ++  +  ++     C +L    
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHT--YPPLLQA---CARLLALR 139

Query: 118 ---DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNAMIAG 172
                  E  K   V  V    +++  Y   G  + A ++FDE+P   +NLV+WN+++ G
Sbjct: 140 YGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNG 199

Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           +  N    + L + R M+ +   P+  ++ SVL  C+ +  L LG++VH  V K  L  +
Sbjct: 200 FAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGN 259

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
             A   LI +Y KCG ++DA K+F E+   + VV+W ++I G A +G G  AL+LF  M+
Sbjct: 260 AHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMME 319

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            E + P  IT V +L AC+H GLVD G +YFD M  +YGI  + +H  CMVDLLGRAG++
Sbjct: 320 REKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRV 379

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
            EA + I  MP +P   ++ TLL AC +HK+L++ E A   L  L+P ++ G YV L+N+
Sbjct: 380 EEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHS-GDYVLLSNL 438

Query: 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 471
           YA + +W DV  +R +M  + V K PG+S +E+   V+EF  GDR HPE   I+E L ++
Sbjct: 439 YAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDI 498

Query: 472 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 531
            +R++  GY+P     L  + +E KE  L +HSE+LAIAF L+K   GTPIR+ KNLRVC
Sbjct: 499 AERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVC 558

Query: 532 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           GDCH A K IS +  REIIVRD +RFHHFK G CSC DYW
Sbjct: 559 GDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 41/272 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  + A  +FD+IP P+                              ++  SWN++++GF
Sbjct: 171 GLFESAHRVFDEIPPPE------------------------------RNLVSWNSVLNGF 200

Query: 81  VQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECG--QLDKAVELF--KVAPVKSV 132
                  +   +F  M E     +  +  ++++   E G   L + V +F  KV  V + 
Sbjct: 201 AANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNA 260

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
            A  A+I  Y K G VD A K+F EM   + +V+W ++I G   N +  D L+L  MM  
Sbjct: 261 HAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMER 320

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             + P   ++  VL  CSH   +  G +   Q+  +  +      L  ++ +  + G +E
Sbjct: 321 EKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVE 380

Query: 251 DACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
           +A      +    + V W  ++   A H K E
Sbjct: 381 EAHNYITTMPLEPNAVVWRTLLGACAMHKKLE 412


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 323/565 (57%), Gaps = 10/565 (1%)

Query: 15  GFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN 74
           G    RG  +    + D   +PD    N +L  + +    ++ A   F  +P ++  SW 
Sbjct: 144 GLKSIRGVKRLCNYMVDNGFEPDQYMRNRVL-LMHVKCGMMIDACRLFDEMPARNAVSWG 202

Query: 75  TMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL----FKV 126
           T+ISG+V   N  +A  LF+ M E+       +++ MI        +    +L     K 
Sbjct: 203 TIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKA 262

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
              + +    A+I  Y K G ++ A  +FDEMP K +V WN++IAGY  + ++E+ L L 
Sbjct: 263 GLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLY 322

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G++ +  + S ++  CS L+S+   KQVH  + ++    D  A T L+  Y K 
Sbjct: 323 HEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKW 382

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G ++DA  +F  +  +++++WNA+I+GY  HG GE+A+ +F+KM  EGM P+ +TF+A+L
Sbjct: 383 GKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVL 442

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC+ +GL + G + F SM  D+ +  +  H+ CM++LLGR G L EA  LI+K PF+P 
Sbjct: 443 SACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPT 502

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             ++  LL ACRVH  L+L +FAA  L+ + P   +  Y+ L NIY +  K  + A +  
Sbjct: 503 ANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSN-YIVLLNIYNSSGKLKEAADVFQ 561

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           ++K   +  +P  SWIEV    H F SGD+ H ++  +  K+ EL   +   GYVP+ + 
Sbjct: 562 TLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQN 621

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            +    +E +E++ ++HSEKLAIA+GL+     TP+++ ++ R+C DCH   K I+ I K
Sbjct: 622 FMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITK 681

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI++RD +RFHHF+DG+CSCGDYW
Sbjct: 682 REIVIRDASRFHHFRDGSCSCGDYW 706



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G     S+  +++  C  L S++  K++   +  +    D      ++ M+ KCG + DA
Sbjct: 127 GFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDA 186

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
           C+LF E+  ++ V+W  +ISGY   G   +A RLF  M++E       TF  ++ A    
Sbjct: 187 CRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGL 246

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            ++  G Q     +   G+         ++D+  + G L +A  +  +MP K
Sbjct: 247 EIIFPGRQLHSCAIKA-GLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDK 297



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 27/312 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KT V WNS++AG+A   G  ++A +L+ ++    V   +   S I+     + +     Q
Sbjct: 297 KTIVGWNSIIAGYALH-GYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQ 355

Query: 64  ------RLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 R         NT +  F  K   +  AR +F  M  +N +SW+A+I+GY   G 
Sbjct: 356 VHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGH 415

Query: 117 LDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
            ++A+++F    +   + + V + A++S     G  +   ++F  M   + V   AM   
Sbjct: 416 GEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFA 475

Query: 173 YVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            +      +GL  +   ++     +P A+  +++L  C    +L+LGK   + ++     
Sbjct: 476 CMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPE 535

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----VTW-------NAMISGYAQHG 278
           K +  +  L+++Y   G L++A  +F  ++RK +      +W       +A +SG   H 
Sbjct: 536 KLSNYIV-LLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHV 594

Query: 279 KGEKALRLFDKM 290
           + EK +   D++
Sbjct: 595 QIEKVVGKVDEL 606


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 275/467 (58%), Gaps = 2/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S ++S Y   G +  +   F       VV  TAM++     G VD A  LFD MP ++ V
Sbjct: 153 SGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHV 212

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            W+AMIAGY+    + + L L   M+  G     ++L SVL  C+ + +L  GK VH  V
Sbjct: 213 AWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYV 272

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
               +       T L+ MY KCG +  A ++F  +  ++V TW + +SG A +G G + L
Sbjct: 273 RSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECL 332

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           +LF +M+  G++P+ ++FVA+L  C+ AGLVD G   FDSM + YG+   P+HY CMVDL
Sbjct: 333 QLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDL 391

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG+L +A+  I  MP +P   ++G LL+A R+H  +DL ++A   L  +   N A  
Sbjct: 392 YGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAA- 450

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           +VQL+NIYA  + W  V+R+R  MK   V K+PG+S IEV   VHEF  G R+HP    I
Sbjct: 451 HVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEI 510

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
              L E+++R++L GY  +    L  + EE KE  +  HSEKLA+AFGLI +P    IR+
Sbjct: 511 ELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRI 570

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCHR  K +S +  REI++RD  RFHHFK G CSC DYW
Sbjct: 571 VKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 117/277 (42%), Gaps = 40/277 (14%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           DV ++   F  +   D      M++      ++  ARDLF  MP+++ V+WSAMI+GY+ 
Sbjct: 164 DVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMH 223

Query: 114 CGQLDKAVELFK----------VAPVKSV---------------VAW------------- 135
            G+  +A+ LF            A + SV               V W             
Sbjct: 224 VGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKL 283

Query: 136 -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
            TA++  Y K G V  A ++F+ M  +N+ TW + ++G   N    + L+L + M G GI
Sbjct: 284 GTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGI 343

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +PN  S  +VL GCS    +  G+     + K  +         ++ +Y + G L+DA  
Sbjct: 344 QPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAIS 403

Query: 255 LFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
              ++        W A+++    H   +      DK+
Sbjct: 404 FINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKL 440


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/537 (38%), Positives = 293/537 (54%), Gaps = 40/537 (7%)

Query: 74   NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA------ 127
             +++S + +   + +A+ +F  MP  ++V W+A+I+ Y++ G L +AV + + A      
Sbjct: 589  TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 648

Query: 128  ---------------------------------PVKSVVAWTAMISGYMKFGKVDLAEKL 154
                                               +SV   TA +  Y+K G++  A ++
Sbjct: 649  PDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREV 708

Query: 155  FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
            FD+M  K+ V W AM+ GY  N    + L L   M   G++P+  +++  L  C+ L +L
Sbjct: 709  FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 768

Query: 215  QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
             LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ WNAMI G 
Sbjct: 769  DLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGL 828

Query: 275  AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
               G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M   Y I+ +
Sbjct: 829  GMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPR 888

Query: 335  PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
             +HY CMVDLL RAG L EA  L+  MP      I G LL  C++H+  +LAE     L 
Sbjct: 889  IEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLI 948

Query: 395  NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
             L P N +G YV L+NIY+   +W+D A++RL MK   V K+P  SW+E    VHEFR G
Sbjct: 949  LLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVG 1007

Query: 455  DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
            D+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKLAIAF L+
Sbjct: 1008 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLL 1067

Query: 515  KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
                G  IRV KNLRVC DCH A K +S I  REIIVRD  RFH F+DG+CSC DYW
Sbjct: 1068 ITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 196 PNASSLSS--VLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+S+Y KCG L  A
Sbjct: 545 PNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRA 604

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F E+     V W A+I+ Y   G   +A+ +       GM+PDS T V +L AC  A
Sbjct: 605 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC--A 662

Query: 313 GLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
            + DL   +         G+A      T  VDL  + G++ +A ++  KM  K   A +G
Sbjct: 663 RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-WG 721

Query: 372 TLLS--ACRVHKRLDLAEFAAMNLFNLNP 398
            ++   A   H R  L  F AM    + P
Sbjct: 722 AMVGGYASNGHPREALDLFLAMQAEGMKP 750



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 16/250 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++  A + F ++  KD  +W  M+ G+    +  +A DLFLAM  +    +  + +  +S
Sbjct: 701 EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 760

Query: 110 GYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                G LD   +  ++      + + V  TA+I  Y K G    A  +F +M  K+++ 
Sbjct: 761 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV 820

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VH 221
           WNAMI G       +    L+  M   G++ N ++   +L  C+H   +Q G++    + 
Sbjct: 821 WNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMT 880

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKG 280
           +L   SP  +    +  L+S   + G L++A +L  ++    + V   A++ G   H   
Sbjct: 881 KLYHISPRIEHYGCMVDLLS---RAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 937

Query: 281 EKALRLFDKM 290
           E A  +  ++
Sbjct: 938 ELAEHVLKQL 947


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/469 (41%), Positives = 286/469 (60%), Gaps = 3/469 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           S ++  Y+ CG +  A  LF    ++ +VV W  MI GY++ G +  + +LFD MP K++
Sbjct: 162 SNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSV 221

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V+WN MI+G  +N   ++ +++   M    + PN  +L SVL   S L +++LGK VH  
Sbjct: 222 VSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLF 281

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEK 282
             K+ +  D    + LI MY KCG ++ A ++F  I+ +K+ +TW+A+I G A HG+   
Sbjct: 282 AEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARD 341

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL  F +M+  G+ P  + ++ +L AC+HAGLV+ G   +  MVN  G+  + +HY CMV
Sbjct: 342 ALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMV 401

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DLLGRAG L EA  LI  MP KP   I   LL AC++H  +++ E  A  L    P ++ 
Sbjct: 402 DLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDS- 460

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G YV L+N++A+   W+ V ++RL MKE ++ K PG SWIE+  V+HEF   D  HP   
Sbjct: 461 GSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAE 520

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            IH  L+E+  R++  GY P+    L  + E+ K+  L +HSEK+AIAFGLI     TP+
Sbjct: 521 GIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPL 580

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++ KNLRVC DCH + K +S I  R+IIVRD  RFHHF++G+CSC DYW
Sbjct: 581 QIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 127/288 (44%), Gaps = 45/288 (15%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F+Q     +   WN MI G+V+  ++  +R+LF +MP K+ VSW+ MISG  + G   +A
Sbjct: 181 FYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEA 240

Query: 121 VELF----------------KVAPVKSVVA------W-----------------TAMISG 141
           +E+F                 V P  S +       W                 +A+I  
Sbjct: 241 IEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDM 300

Query: 142 YMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
           Y K G +D A ++F+ +   KN +TW+A+I G   +  A D L     M   G+ P+   
Sbjct: 301 YSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVV 360

Query: 201 LSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
              VL  CSH   ++ G+ + + +V    L         ++ +  + G LE+A +L L +
Sbjct: 361 YIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNM 420

Query: 260 QRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 305
             K D V   A++     HG  E   R+   +   G  P DS ++VAL
Sbjct: 421 PVKPDDVILKALLGACKMHGNIEMGERIAKILM--GWYPHDSGSYVAL 466



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 126/297 (42%), Gaps = 45/297 (15%)

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAG---------YVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  A K F ++   N  +WN +I           +  NS  E  L    M+    + PN
Sbjct: 64  EIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNS-LEALLYFSHMLTDGLVEPN 122

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
             +   VL  C+ L+ ++ GKQ+H  V K  L  D    + L+ +Y  CG ++DA  LF 
Sbjct: 123 KFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFY 182

Query: 258 EIQ--------------------------------RKDVVTWNAMISGYAQHGKGEKALR 285
           + +                                 K VV+WN MISG AQ+G  ++A+ 
Sbjct: 183 QTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIE 242

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           +F  M+   + P+ +T V++L A +  G ++LG ++         I       + ++D+ 
Sbjct: 243 MFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALIDMY 301

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNPAN 400
            + G + +AV + + +  K  P  +  ++    +H R    L  F  M    + P++
Sbjct: 302 SKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSD 358


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 300/517 (58%), Gaps = 12/517 (2%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECG--QLD 118
           P  D   +NT+I  + Q ++      LF     +     N  ++  ++ G    G  +L 
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144

Query: 119 KAVE--LFKVAPVKSVVAWTAMISGYMKFGK--VDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           K V   + K    + V     +I  Y   G+   + AEK+FD+ P  + VTW+AMIAG+V
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFV 204

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
               +   + L R M  +G+ P+  ++ SVL  C+ L +L+LGK V   V K  + K   
Sbjct: 205 RLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVE 264

Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
               LI M+ KCG+++ A KLF ++  + +V+W ++I+G A HG+G  A+ LFD+M + G
Sbjct: 265 LCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENG 324

Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
           + PD + F+ +L AC+H+GLVD G  YF SM  ++ I  K +HY CMVDLL R G + EA
Sbjct: 325 ITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEA 384

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414
            + ++KMPF+P   I+ T+++AC     L L E  +  L    P + +  YV L+NIYA 
Sbjct: 385 FEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESN-YVLLSNIYAK 443

Query: 415 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 474
           +++W+   ++R  M    + K+PG + IEV   ++EF +GD+ H +   I+E + E+ + 
Sbjct: 444 LRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGRE 503

Query: 475 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
           +K AGYVP     L  + EE KE  L  HSEKLAIAF L+  P GT IR+ KNLRVC DC
Sbjct: 504 IKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDC 563

Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           H ATK+IS +  REI+VRD  RFHHFK+G CSC D+W
Sbjct: 564 HSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 14/261 (5%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWS 105
           L  D    A   F   P  DT +W+ MI+GFV+    ++A DLF  M       + ++  
Sbjct: 173 LGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMV 232

Query: 106 AMISGYIECG--QLDKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +++S   + G  +L K VE +  K    KSV    A+I  + K G VD A KLF +M ++
Sbjct: 233 SVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSR 292

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
            +V+W ++IAG   +    D + L   M+  GI P+  +   VL  CSH   +  G+   
Sbjct: 293 TIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYF 352

Query: 222 QLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 279
             + ++  +         ++ + C+ G +++A +   ++    + + W  +I+  A H  
Sbjct: 353 GSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIIT--ACHAT 410

Query: 280 GEKALRLFDKMKDEGMKPDSI 300
           GE  L+L + +  E +K + +
Sbjct: 411 GE--LKLGESISKELIKSEPM 429


>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/642 (33%), Positives = 333/642 (51%), Gaps = 90/642 (14%)

Query: 1   MNVKTTVNWNSVLAGFAK------------------------------QRGKLKDAQELF 30
           M V+  ++WN++++G+A+                              Q G L +A+ +F
Sbjct: 198 MPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVF 257

Query: 31  DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           D++P    ++YN+M++   +    +  A + F+ +P ++  SWNT+ISG+ Q  ++A+AR
Sbjct: 258 DEMPGKREMAYNVMIAG-YVQYKKMDMARELFEAMPCRNVGSWNTIISGYGQNGDIAQAR 316

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-------------------------- 124
           +LF  M +++ VSW+A+I+GY + G  +K + +                           
Sbjct: 317 ELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMA 376

Query: 125 -------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
                        K       +   A++  Y K G +  A  +F+ M  K++++WN M+A
Sbjct: 377 ALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLA 436

Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
           GY  + +    L +   M   G +P+  ++    L  S+    ++G         +PL  
Sbjct: 437 GYARHGFGRQALLVFDSMKTAGFKPDEITM----LIWSNNRLRKVGNTWVPTSLMNPLGN 492

Query: 232 DTTALTPLISMY--CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                T +       +   +   C  FL +          +IS Y        A  LF  
Sbjct: 493 TWVTSTSVTEKQEERRVNRIGSVCITFLLV----------IISAYKYR---LHACHLFPC 539

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
                +    I  V +LLAC+H GL D G +YF SM  DYGI     HY CM+DLLGRAG
Sbjct: 540 NWLLSLYLTCIHNVGVLLACSHTGLTDRGTEYFYSMSKDYGITPNSKHYNCMIDLLGRAG 599

Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
            L EA +L++ MPF+P  A +G LL A R+H   +L E AA  +FN+ P NA G YV L+
Sbjct: 600 LLEEAHNLMRNMPFEPDAATWGALLGASRIHGNAELGEKAAEMVFNMEPNNA-GMYVLLS 658

Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
           N+YA + KW DV ++RL M++  + K+PGYSW+EV   +H+F  GD  HPE   I+  L+
Sbjct: 659 NLYATLGKWVDVGKLRLKMRQLGIQKIPGYSWVEVQNKIHKFTVGDCFHPEKDRIYAYLE 718

Query: 470 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 529
           E++ +MK  G+V  ++  LH V EE K+++L +HSEKLA+AFG++ +P G PIRV KNLR
Sbjct: 719 EIDLKMKHEGHVSLVKLVLHDVEEEEKKRMLKYHSEKLAVAFGILTIPAGRPIRVMKNLR 778

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC DCH   KYIS I  R II+RD+ RFH+  +G CSCGDYW
Sbjct: 779 VCEDCHNVIKYISKIVGRLIILRDSHRFHYVSEGICSCGDYW 820



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 176/297 (59%), Gaps = 2/297 (0%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ G+ K R  L DA+ LFD +P  + +S+N M+S    + D ++ A   F+  P
Sbjct: 173 ISWNCLMGGYVK-RKMLGDARRLFDHMPVRNAISWNTMISGYARDGD-LLQARRLFEESP 230

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+  +VQ   + +AR +F  MP K  ++++ MI+GY++  ++D A ELF+ 
Sbjct: 231 VRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEA 290

Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            P ++V +W  +ISGY + G +  A +LFD M  ++ V+W A+IAGY +    E  + +L
Sbjct: 291 MPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHML 350

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
             M   G   N S+    L  C+ +++L LGKQVH    K+           L+ MYCKC
Sbjct: 351 VKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKC 410

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
           G + +A  +F  +Q KD+++WN M++GYA+HG G +AL +FD MK  G KPD IT +
Sbjct: 411 GSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEITML 467



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 209/406 (51%), Gaps = 26/406 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K   +WN +L G+ K R +L DA+ LFD +PQ D VS+N+MLS   + S  V  A  
Sbjct: 74  MPYKNLFSWNLMLTGYVKNR-RLVDARNLFDLMPQKDAVSWNVMLSG-YVRSGCVDEAKL 131

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD+ SWN +++ +VQ   + +AR LF +  +   +SW+ ++ GY++   L  A
Sbjct: 132 VFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDA 191

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             LF   PV++ ++W  MISGY + G +  A +LF+E P +++ TW AM+  YV++   +
Sbjct: 192 RRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLD 251

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
           +  ++   M G        + + ++ G      + + +++    F++  C++  +   +I
Sbjct: 252 EARRVFDEMPG----KREMAYNVMIAGYVQYKKMDMAREL----FEAMPCRNVGSWNTII 303

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           S Y + GD+  A +LF  + ++D V+W A+I+GYAQ G  EK + +  KMK +G   +  
Sbjct: 304 SGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRS 363

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-CMV-----DLLGRAGKLVEA 354
           TF   L  C     + LG Q        +G A K  +   C+V     ++  + G + EA
Sbjct: 364 TFCCALSTCAGMAALVLGKQV-------HGQAVKTGYDNGCLVGNALLEMYCKCGSIGEA 416

Query: 355 VDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
            D+ ++M  K   + + T+L+    H   R  L  F +M      P
Sbjct: 417 YDVFERMQLKDIIS-WNTMLAGYARHGFGRQALLVFDSMKTAGFKP 461



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 135/233 (57%), Gaps = 8/233 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F  +P K+  SWN M++G+V+ + +  AR+LF  MP+K++VSW+ M+SGY+  G +
Sbjct: 67  ALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCV 126

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
           D+A  +F   P K  ++W  +++ Y++ G+++ A +LF+      L++WN ++ GYV+  
Sbjct: 127 DEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFESKVDWELISWNCLMGGYVKRK 186

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
              D  +L   M    +R NA S ++++ G +    L    Q  +L  +SP+ +D    T
Sbjct: 187 MLGDARRLFDHM---PVR-NAISWNTMISGYARDGDLL---QARRLFEESPV-RDVFTWT 238

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++  Y + G L++A ++F E+  K  + +N MI+GY Q+ K + A  LF+ M
Sbjct: 239 AMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEAM 291



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 164/355 (46%), Gaps = 53/355 (14%)

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           IS  ++  +   A  +F +MP KN  SW+ M++GY++  +L  A  LF + P K  V+W 
Sbjct: 55  ISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWN 114

Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
            M+SGY++ G VD A+ +FD MP K+ ++WN ++A YV+N   E+  +L           
Sbjct: 115 VMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRL----------- 163

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
                                       F+S +  +  +   L+  Y K   L DA +LF
Sbjct: 164 ----------------------------FESKVDWELISWNCLMGGYVKRKMLGDARRLF 195

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
             +  ++ ++WN MISGYA+ G   +A RLF    +E    D  T+ A++ A   +G++D
Sbjct: 196 DHMPVRNAISWNTMISGYARDGDLLQARRLF----EESPVRDVFTWTAMVFAYVQSGMLD 251

Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
              + FD M     +A     Y  M+    +  K+  A +L + MP +     + T++S 
Sbjct: 252 EARRVFDEMPGKREMA-----YNVMIAGYVQYKKMDMARELFEAMPCR-NVGSWNTIISG 305

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
               +  D+A+  A  LF++        +  +   YA    ++ V  + + MK +
Sbjct: 306 --YGQNGDIAQ--ARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRD 356


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 314/571 (54%), Gaps = 14/571 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM-LSCILLNSDDVVAAFDFFQRLPIK 68
            S +A  A + GK   AQ          V++  ++ L C+    D + +A   F R+P  
Sbjct: 83  QSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCV---CDSLSSARLLFDRIPKH 139

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE------ 122
           +   WN +I G+        A  L+  M +   V  +      ++      A+E      
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 123 --LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
             + +    K V    A+I  Y K G V  A ++FD++  ++ V WN+M+A Y +N   +
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPD 259

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L L   M+  G+RP  ++L + +   +  ++L  G+++H L ++          T L+
Sbjct: 260 ACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALV 319

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
            MY KCG +  A  LF  +  K VV+WNAMI+GYA HG   +AL LF++M +   KPD I
Sbjct: 320 DMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHI 378

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TFV +L AC+H GL++ G  +F++M+ DY I     HYTCMVDLLG +G+L EA +LI +
Sbjct: 379 TFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQ 438

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           M   P   ++G LL++C++H  ++L E A   L  L P +A G YV L+NIYA   KW+ 
Sbjct: 439 MKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDA-GNYVILSNIYAQAGKWEG 497

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
           VA++R  M +  + K    SWIEV   VH F SGD  HP    I+ +L+ +   MK AGY
Sbjct: 498 VAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGY 557

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
            P      H V ++ K  ++  HSE+LAIAFGLI  P GT + + KNLR+C DCH A K+
Sbjct: 558 SPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKF 617

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           IS I +REI VRD  R+HHFKDG CSCGDYW
Sbjct: 618 ISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 34/281 (12%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P  S+ +S+L  C    +++ GKQ+H  V  +    DT   T L+++YC C  L  A 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            LF  I + ++  WN +I GYA +G  E A++L+ +M D G+ PD+ TF  +L AC    
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 314 LVDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
            ++ G +  + +V      D  + A       ++D+  + G +  A ++  K+  +    
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAA------LIDMYAKCGCVGSAREVFDKILVR-DAV 243

Query: 369 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
           ++ ++L+A   +   D  L+  + M L  L P          A +  A+    D A +  
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTE--------ATLVTAISASADNAALPQ 295

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
                   ++ G SW +      EF S D+V   LV ++ K
Sbjct: 296 GR------ELHGLSWRQ------EFESHDKVKTALVDMYAK 324


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/623 (35%), Positives = 335/623 (53%), Gaps = 56/623 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLN--SDD 54
           M  +   +WNS+L+ + K  G + DA  L D++     +PD+V++N +LS       S D
Sbjct: 150 MKDRNLSSWNSILSSYTKL-GYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD 208

Query: 55  VVAAFDFFQRLPIKDTAS------------------------------W------NTMIS 78
            +A     Q   +K + S                              W       T+I 
Sbjct: 209 AIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLID 268

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVA 134
            +++   +  AR +F  M  KN V+W++++SG      L  A    + + K       + 
Sbjct: 269 MYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAIT 328

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           W ++ SGY   GK + A  +  +M  K    N+V+W A+ +G  +N    + LK+   M 
Sbjct: 329 WNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQ 388

Query: 191 GLGIRPNASSLSSVL--LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
             G+ PNA+++S++L  LGC  LS L  GK+VH    +  L  D    T L+ MY K GD
Sbjct: 389 EEGVGPNAATMSTLLKILGC--LSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 446

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           L+ A ++F  I+ K + +WN M+ GYA  G+GE+ +  F  M + GM+PD+ITF ++L  
Sbjct: 447 LQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSV 506

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C ++GLV  G +YFD M + YGI    +H +CMVDLLGR+G L EA D I+ M  KP   
Sbjct: 507 CKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDAT 566

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           I+G  LS+C++H+ L+LAE A   L  L P N+A  Y+ + N+Y+ + +W+DV RIR  M
Sbjct: 567 IWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSAN-YMMMINLYSNLNRWEDVERIRNLM 625

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
           + N V     +SWI++   VH F +  + HP+   I+ +L +L   MK +GYVPD     
Sbjct: 626 RNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIH 685

Query: 489 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 548
             + +  KE+LL+ H+EKLA+ +GLIK     PIRV KN  +C D H   KY+S +  RE
Sbjct: 686 QDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNRE 745

Query: 549 IIVRDTTRFHHFKDGTCSCGDYW 571
           I++++  R HHF+DG CSC D W
Sbjct: 746 IVLQEGARVHHFRDGKCSCNDSW 768



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 199/403 (49%), Gaps = 54/403 (13%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S   GF  +   L  A +LFD++P+ D +++N ++  + L S +   A + F+ +     
Sbjct: 27  SASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIV-MVNLRSGNWEKAVELFREMQFSGA 85

Query: 71  ASWNTMISGFVQ----KKNMAKARDL---FLAMPEKNSVSW-SAMISGYIECGQLDKAVE 122
            ++++ +   +Q    K+  A+ R +    L +  +++VS  +++I  Y   G+L+ + +
Sbjct: 86  KAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRK 145

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT----KNLVTWNAMIAGYVENSW 178
           +F     +++ +W +++S Y K G VD A  L DEM       ++VTWN++++GY     
Sbjct: 146 VFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGL 205

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
           ++D + +L+ M   G++P+ SS+SS+L   +    L+LGK +H  + ++ L  D    T 
Sbjct: 206 SKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETT 265

Query: 239 LISMYCKCGD-------------------------------LEDACKLFLEIQRK----D 263
           LI MY K G                                L+DA  L + ++++    D
Sbjct: 266 LIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPD 325

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
            +TWN++ SGYA  GK EKAL +  KMK++G+ P+ +++ A+   C+  G     ++ F 
Sbjct: 326 AITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFI 385

Query: 324 SMVNDYGIAAKPDHYTCMVDLLG-----RAGKLVEAVDLIKKM 361
            M  + G+       + ++ +LG      +GK V    L K +
Sbjct: 386 KM-QEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNL 427



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 216 LGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           LG  +H  + K  L   DT  ++  +  Y +C  L  A KLF E+ ++D + WN ++   
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFD 323
            + G  EKA+ LF +M+  G K    T V LL  C+           H  ++ LG++   
Sbjct: 65  LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNV 124

Query: 324 SMVN 327
           SM N
Sbjct: 125 SMCN 128


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/630 (34%), Positives = 327/630 (51%), Gaps = 81/630 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG- 79
           G L DA+++F   P  +VVS+ I++S +  N D  V A D F+ + + +       IS  
Sbjct: 70  GLLADAKQIFHHTPCKNVVSWTILISGLAKN-DCFVEAIDVFREMTMGNFKPNAVTISSV 128

Query: 80  -----------------------------FVQKK---------NMAKARDLFLAMPEKNS 101
                                        FV+            M  AR LF +M E+N 
Sbjct: 129 LPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVA--------------------------- 134
           VSW+A++SGY + G  ++A++LF +   K ++                            
Sbjct: 189 VSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 135 ------------WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                        TA++  Y+    VD A ++F EM  K++  W  M+ G+      +  
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 183 LKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           +K    M+G+  ++ ++  L  +L  CSH  +LQ G++VH L  K+    +    + +I 
Sbjct: 309 IKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY  CG+LEDA + F  +  KDVV WNAMI+G   +G G  A+ LF +MK  G+ PD  T
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FV++L AC+HAG+V  G+Q F  MV          HY C++D+LGRAG+L  A   I  M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PF+P   ++ TLL ACR+H  + L    +  +F + P N AG YV L+N+YA    W+ V
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEP-NDAGYYVLLSNMYALAGNWEGV 547

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
              R S++   + K PG+S IE+   ++ F +G++ HP+   I   LK L  ++K AGYV
Sbjct: 548 KMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYV 607

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           P+    L  V +++K+ +L  HSEK+AIAFGL++   GT IR+ KNLR C DCH A+K++
Sbjct: 608 PNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFV 667

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  R ++++D  RFH F+DG CSC DYW
Sbjct: 668 SKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 167/318 (52%), Gaps = 14/318 (4%)

Query: 14  AGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKD 69
           A   ++   LK  Q++  +I    + ++N  LS  L+N+      +  A   F   P K+
Sbjct: 28  ASILRKLKDLKPLQQIHAQIITSGL-THNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKN 86

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG--QLDKAVEL 123
             SW  +ISG  +     +A D+F  M     + N+V+ S+++  +   G  ++ K+V  
Sbjct: 87  VVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHC 146

Query: 124 FKV--APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           F V      +V   TA++  Y KFG + +A +LF+ M  +N+V+WNA+++GY ++ ++E+
Sbjct: 147 FWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEE 206

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            + L  +M   G+  +  ++ S++     +  LQ+G  +H  + ++    D    T L+ 
Sbjct: 207 AIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMD 266

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSI 300
           +Y     ++DA ++F E+  KDV  W  M++G++     ++A++ F+KM   + +K DSI
Sbjct: 267 IYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSI 326

Query: 301 TFVALLLACNHAGLVDLG 318
             + +L +C+H+G +  G
Sbjct: 327 VLMGILSSCSHSGALQQG 344


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/536 (38%), Positives = 306/536 (57%), Gaps = 14/536 (2%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSW 104
           L +S D+  A   F ++   D    NTMI G+ + +N  +A  L+  M E+    ++ ++
Sbjct: 55  LSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTY 114

Query: 105 SAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
             +++     G +        E+ K      +    A+I  Y   G    A  +FDE   
Sbjct: 115 PFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTV 174

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQ 219
           +++VTWN MI  ++    +E    LL  M  L  +RP+  ++ S++  C+ L +L+ GK 
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234

Query: 220 VHQL---VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
           +H     + K  +  D    T L+ MY KCG ++ A ++F  ++ ++V TWNA+I G A 
Sbjct: 235 LHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 294

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           HG GE A+ LFD+M+ + + PD +TF+ALL AC+HAGLVD G+  F +M N + I  + +
Sbjct: 295 HGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 354

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY C+VDLL RA K+ +A+  I+ MP K    ++ TLL ACR     DLAE     +  L
Sbjct: 355 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIEL 414

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 456
            P ++ G YV L+N+YA + +WD   ++R  MK   + K PG SWIE+  ++H+F +GDR
Sbjct: 415 EP-DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDR 473

Query: 457 VHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
            H +   I+  ++E+ +R+ L  G+VP     L  + EE KE  L  HSEKLAIA GLI 
Sbjct: 474 SHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLIS 533

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            P G+PIR+ KNLRVC DCH   K  S +  REI+ RD +RFHHFK+G+CSC D+W
Sbjct: 534 TPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 194 IRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDL 249
           I+P++  + L SV    +H +S+   KQ H L+ ++ L  +    + LIS       GDL
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             A KLF ++Q  D    N MI GYA+     +A+ L+  M + G+  D+ T+  +L AC
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 310 NHAGLVDLGIQYF-DSMVNDYG 330
              G V LG ++  + + N +G
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFG 143



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 17/195 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---- 66
           + L  F    G    A ++FD+    DVV++NIM++   LN      AFD    +     
Sbjct: 150 NALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA-HLNKGLSEKAFDLLDEMTKLDN 208

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS-------VSWSAMISGYIECGQLD 118
              D  +  +++    Q  N+ + + L     E +        V  +A++  Y +CG +D
Sbjct: 209 LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSID 268

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYV 174
            A+++F+   V++V  W A+I G    G  + A  LFD+M    L    VT+ A++    
Sbjct: 269 LALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACS 328

Query: 175 ENSWAEDGLKLLRMM 189
                ++GL + + M
Sbjct: 329 HAGLVDEGLAMFQAM 343


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 286/469 (60%), Gaps = 6/469 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKN 162
           ++++S Y  C  LD A +L    P       TA  +I+  MK G+ D A+++F +M  ++
Sbjct: 98  TSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRD 157

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +VTWN+MI G V N   E+ L+  R M+   + P+  + +SV+ GC+ L S    + VH 
Sbjct: 158 VVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHG 217

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+ +  +  +    + LI +Y KCG +  A K+F  IQ  DV  WN+MI+G A HG    
Sbjct: 218 LMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALD 277

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A+ +F +M+ E + PDSITF+ +L AC+H GLV+ G +YFD M   Y I  + +HY  MV
Sbjct: 278 AIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMV 337

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DLLGRAG + EA  +IK MP +P   I+  LLSACR  K  +L E A   + +LN    +
Sbjct: 338 DLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHLN----S 393

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G Y+ L+N+Y +++KWD   R+R  MK + V K  G SW+E+G V+H+F++GDR HPE  
Sbjct: 394 GDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETG 453

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
           +I++ L+ L +R KL G++P  +  L  V +E +E+ L  HSEKLA+A+ ++K   GT I
Sbjct: 454 AIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEI 513

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RV KNLR C DCH   K +S +  R IIVRD  RFH F+ G CSC DYW
Sbjct: 514 RVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 45/237 (18%)

Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-------------- 246
           L+ +L  C   S  +   Q H  + K       + +T L+S Y  C              
Sbjct: 62  LNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMP 121

Query: 247 -------------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
                              G+ + A ++F ++ R+DVVTWN+MI G  ++ + E+ALR F
Sbjct: 122 YWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFF 181

Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD----HYTCMVD 343
            +M +  ++PD  TF +++  C       LG  +   +V+   I  K        + ++D
Sbjct: 182 REMLNSNVEPDGFTFASVINGC-----ARLGSSHHAELVHGLMIEKKIQLNFILSSALID 236

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK-RLD-LAEFAAMNLFNLNP 398
           L  + G++  A  +   +      +++ ++++   +H   LD +  F+ M + +++P
Sbjct: 237 LYSKCGRINTAKKVFNSIQ-HDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSP 292



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 114/298 (38%), Gaps = 89/298 (29%)

Query: 26  AQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTMISG 79
           A +L D++P    D+++ N++++ ++      V  FDF    F+++  +D  +WN+MI G
Sbjct: 113 AHQLLDEMPYWGFDLITANLIIASLM-----KVGEFDFAKRVFRKMLRRDVVTWNSMIGG 167

Query: 80  FVQKKNMAKARDLFLAMPEKNS-------------------------------------- 101
            V+ +   +A   F  M   N                                       
Sbjct: 168 CVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLN 227

Query: 102 -VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
            +  SA+I  Y +CG+++ A ++F       V  W +MI+G    G    A  +F +M  
Sbjct: 228 FILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEM 287

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++                               + P++ +   +L  CSH   ++ G++ 
Sbjct: 288 ES-------------------------------VSPDSITFIGILTACSHCGLVEQGRRY 316

Query: 221 HQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG 273
             L+ +     P  +   A+  L+    + G +E+A  +   +    D+V W A++S 
Sbjct: 317 FDLMRRHYSIQPQLEHYGAMVDLLG---RAGLVEEAYAMIKAMPMEPDIVIWRALLSA 371


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 322/555 (58%), Gaps = 25/555 (4%)

Query: 31  DKIPQPDVVSYNIMLSC-ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           DK+P   V +Y     C  LL++D V      F  +  K  +SWNT+IS   Q+ N A A
Sbjct: 308 DKVPNALVAAYG---RCGRLLHADRV------FTDIRRKTVSSWNTLISAHAQQ-NTAAA 357

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLD-------KAVELF--KVAPVKSVVAWTAMIS 140
            +LF+ M     +       G +     D       KA   F  +    +  V   +++S
Sbjct: 358 IELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRASLLS 417

Query: 141 GYMKFGKVD-LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNA 198
            Y++  + + LA  LFD M  K  V W AMI+GY +N    + L+L R M  + G   + 
Sbjct: 418 AYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVEGHCSSV 477

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
            S +S L+ CS LSS++LGK++H    K+ LC D    + LI MY KCG +EDA   F  
Sbjct: 478 ISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKCGFVEDARTFFDR 537

Query: 259 IQRKDV-VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
           ++ +D  V+W AMI+GYA +G G +A+ L+ KM+ EGM+PD  T++ LL+AC HAG+++ 
Sbjct: 538 LKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTYLGLLMACGHAGMLEE 597

Query: 318 GIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
           G+++FD M N +  I  K +HY+C++ +L RAG+  +AV L+ +MP +P   I  ++LSA
Sbjct: 598 GLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEMPQEPDAKILSSVLSA 657

Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
           C +H   +L    A  L  L P + A  YV  +N+YA  ++WDD+ ++R  +++  + K 
Sbjct: 658 CHIHGEAELGSDVAERLLELEP-DKAEHYVLASNMYAGSRRWDDMRKVRKMLRDAGIAKE 716

Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
           PG SWI+V   V+ F +G+  HPE+  +    + LE+R++  GYVPD    LH + EE K
Sbjct: 717 PGCSWIDVAGKVYSFVAGENPHPEMEQVRGMWRSLEERIREIGYVPDTTVVLHELEEEEK 776

Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
            + L +HSEK A+ FGL++      +RVFKN+R+C DCH A + IS +  R+I+VRD  R
Sbjct: 777 VEALWWHSEKQAVTFGLLRTATPATVRVFKNIRMCKDCHNAARLISKVTGRDIVVRDKKR 836

Query: 557 FHHFKDGTCSCGDYW 571
           FHHF+ G CSCGDYW
Sbjct: 837 FHHFRGGICSCGDYW 851



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 29/313 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  +AK  G+L DA+  F + P   VVS+N+ML     N  +  AAF   + + IK+
Sbjct: 209 NALVDMYAKC-GELADAERAFPEAPS--VVSWNVMLGAYTRNR-EAGAAFGLLRDMQIKE 264

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK--AVELFKVA 127
             S                     +   E   +S     SG  E  +L +  A  + +  
Sbjct: 265 HGS---------------------VPADEITVLSVLPACSGPTELSRLRELHAFTVRRGL 303

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
              S     A+++ Y + G++  A+++F ++  K + +WN +I+ + + + A      ++
Sbjct: 304 DAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQNTAAAIELFIQ 363

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
           M    G++P+  S+ S+L+ C+    L   K  H  + ++ L +DT     L+S Y +C 
Sbjct: 364 MTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCS 423

Query: 248 DLEDACK-LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVAL 305
             E   + LF  ++ K  V W AMISGY+Q+G   ++L+LF +M+  EG     I+  + 
Sbjct: 424 RTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVISATSA 483

Query: 306 LLACNHAGLVDLG 318
           L+AC+    V LG
Sbjct: 484 LMACSELSSVRLG 496



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 27/320 (8%)

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVA-----PVKSVVAWTAMISGYMKFGKVDLA 151
           P++ ++  +A   G++  G      ++  +A     P    V   +++S Y + G+V+ A
Sbjct: 64  PDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVG-NSLVSMYGRCGRVEDA 122

Query: 152 EKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLR-MMIGLGIRPNASSLSSVLLGC 208
           EK+F  +P   +N+V+WNA++A    +     GL+L R  ++ +G   + ++L +VL  C
Sbjct: 123 EKVFGGIPDAARNIVSWNALMAALSGDP--RRGLELFRDCLVAVGGMVDEATLVTVLPMC 180

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + L   + G+ VH L  KS           L+ MY KCG+L DA + F E     VV+WN
Sbjct: 181 AALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPEA--PSVVSWN 238

Query: 269 AMISGYAQHGKGEKALRLFDKM--KDEGMKP-DSITFVALLLACNHAGLVDLG-IQYFDS 324
            M+  Y ++ +   A  L   M  K+ G  P D IT +++L AC+  G  +L  ++   +
Sbjct: 239 VMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACS--GPTELSRLRELHA 296

Query: 325 MVNDYGIAAKPDHY-TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 383
                G+ A  D     +V   GR G+L+ A  +   +  K   + + TL+SA   H + 
Sbjct: 297 FTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSS-WNTLISA---HAQQ 352

Query: 384 DLAEFAAMNLFNLNPANAAG 403
           + A  AA+ LF +   NA G
Sbjct: 353 NTA--AAIELF-IQMTNACG 369


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 275/467 (58%), Gaps = 2/467 (0%)

Query: 105  SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
            S ++S Y   G +  +   F       VV  TAM++     G VD A  LFD MP ++ V
Sbjct: 1358 SGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHV 1417

Query: 165  TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
             W+AMIAGY+    + + L L   M+  G     ++L SVL  C+ + +L  GK VH  V
Sbjct: 1418 AWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYV 1477

Query: 225  FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
                +       T L+ MY KCG +  A ++F  +  ++V TW + +SG A +G G + L
Sbjct: 1478 RSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECL 1537

Query: 285  RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            +LF +M+  G++P+ ++FVA+L  C+ AGLVD G   FDSM + YG+   P+HY CMVDL
Sbjct: 1538 QLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDL 1596

Query: 345  LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
             GRAG+L +A+  I  MP +P   ++G LL+A R+H  +DL ++A   L  +   N A  
Sbjct: 1597 YGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDA-A 1655

Query: 405  YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
            +VQL+NIYA  + W  V+R+R  MK   V K+PG+S IEV   VHEF  G R+HP    I
Sbjct: 1656 HVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEI 1715

Query: 465  HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
               L E+++R++L GY  +    L  + EE KE  +  HSEKLA+AFGLI +P    IR+
Sbjct: 1716 ELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRI 1775

Query: 525  FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
             KNLRVC DCHR  K +S +  REI++RD  RFHHFK G CSC DYW
Sbjct: 1776 VKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 42/278 (15%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            DV ++   F  +   D      M++      ++  ARDLF  MP+++ V+WSAMI+GY+ 
Sbjct: 1369 DVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMH 1428

Query: 114  CGQLDKAVELFK----------VAPVKSV---------------VAW------------- 135
             G+  +A+ LF            A + SV               V W             
Sbjct: 1429 VGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKL 1488

Query: 136  -TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
             TA++  Y K G V  A ++F+ M  +N+ TW + ++G   N    + L+L + M G GI
Sbjct: 1489 GTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGI 1548

Query: 195  RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            +PN  S  +VL GCS    +  G+     + K  +         ++ +Y + G L+DA  
Sbjct: 1549 QPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAIS 1608

Query: 255  LF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
                + ++  + V W A+++    H   +      DK+
Sbjct: 1609 FINDMPMEPHEGV-WGALLNASRIHNSVDLGKYALDKL 1645


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 286/469 (60%), Gaps = 6/469 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTA--MISGYMKFGKVDLAEKLFDEMPTKN 162
           ++++S Y  C  LD A +L    P       TA  +I+  MK G+ D A+++F +M  ++
Sbjct: 59  TSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRD 118

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           +VTWN+MI G V N   E+ L+  R M+   + P+  + +SV+ GC+ L S    + VH 
Sbjct: 119 VVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHG 178

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L+ +  +  +    + LI +Y KCG +  A K+F  IQ  DV  WN+MI+G A HG    
Sbjct: 179 LMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALD 238

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           A+ +F +M+ E + PDSITF+ +L AC+H GLV+ G +YFD M   Y I  + +HY  MV
Sbjct: 239 AIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMV 298

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DLLGRAG + EA  +IK MP +P   I+  LLSACR  K  +L E A   + +LN    +
Sbjct: 299 DLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGEVAIAKISHLN----S 354

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
           G Y+ L+N+Y +++KWD   R+R  MK + V K  G SW+E+G V+H+F++GDR HPE  
Sbjct: 355 GDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETG 414

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
           +I++ L+ L +R KL G++P  +  L  V +E +E+ L  HSEKLA+A+ ++K   GT I
Sbjct: 415 AIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEI 474

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           RV KNLR C DCH   K +S +  R IIVRD  RFH F+ G CSC DYW
Sbjct: 475 RVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 45/246 (18%)

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----- 246
           LGI  +   L+ +L  C   S  +   Q H  + K       + +T L+S Y  C     
Sbjct: 14  LGILSDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDL 73

Query: 247 ----------------------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
                                       G+ + A ++F ++ R+DVVTWN+MI G  ++ 
Sbjct: 74  AHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNE 133

Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD-- 336
           + E+ALR F +M +  ++PD  TF +++  C       LG  +   +V+   I  K    
Sbjct: 134 RFEEALRFFREMLNSNVEPDGFTFASVINGC-----ARLGSSHHAELVHGLMIEKKIQLN 188

Query: 337 --HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK-RLD-LAEFAAMN 392
               + ++DL  + G++  A  +   +      +++ ++++   +H   LD +  F+ M 
Sbjct: 189 FILSSALIDLYSKCGRINTAKKVFNSIQ-HDDVSVWNSMINGLAIHGLALDAIGVFSQME 247

Query: 393 LFNLNP 398
           + +++P
Sbjct: 248 MESVSP 253



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 114/298 (38%), Gaps = 89/298 (29%)

Query: 26  AQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTMISG 79
           A +L D++P    D+++ N++++ ++      V  FDF    F+++  +D  +WN+MI G
Sbjct: 74  AHQLLDEMPYWGFDLITANLIIASLM-----KVGEFDFAKRVFRKMLRRDVVTWNSMIGG 128

Query: 80  FVQKKNMAKARDLFLAMPEKNS-------------------------------------- 101
            V+ +   +A   F  M   N                                       
Sbjct: 129 CVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLN 188

Query: 102 -VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
            +  SA+I  Y +CG+++ A ++F       V  W +MI+G    G    A  +F +M  
Sbjct: 189 FILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEM 248

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           ++                               + P++ +   +L  CSH   ++ G++ 
Sbjct: 249 ES-------------------------------VSPDSITFIGILTACSHCGLVEQGRRY 277

Query: 221 HQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG 273
             L+ +     P  +   A+  L+    + G +E+A  +   +    D+V W A++S 
Sbjct: 278 FDLMRRHYSIQPQLEHYGAMVDLLG---RAGLVEEAYAMIKAMPMEPDIVIWRALLSA 332


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/669 (33%), Positives = 345/669 (51%), Gaps = 108/669 (16%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCILLNSD---------D 54
           +N++L+ +A+  G + DAQ LF  +     P   VV++N M+S ++ +           D
Sbjct: 203 FNALLSMYARL-GLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYD 261

Query: 55  VVA------AFDFFQRLP------------------IKDT-ASWNTMISG-----FVQKK 84
           +VA         F   LP                  +KD+  + N+ ++      +   +
Sbjct: 262 MVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHE 321

Query: 85  NMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFK-------VAPVKSVVA- 134
            +  AR +F  +P   +    W+AM+ GY + G  ++A+ELF        V P ++ +A 
Sbjct: 322 RVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAG 381

Query: 135 --------------------------------WTAMISGYMKFGKVDLAEKLFDEMPTKN 162
                                             A++  Y + G ++ A  +F  +  ++
Sbjct: 382 VLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRD 441

Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLG------------------IRPNASSLSSV 204
           +V+WN +I G V      D  +L+R M   G                  + PN  +L ++
Sbjct: 442 VVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTL 501

Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           L GC+ L++   GK++H    +  L  D    + L+ MY KCG L  +  +F  + +++V
Sbjct: 502 LPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNV 561

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           +TWN +I  Y  HG G++A+ LFD+M      KP+ +TF+A L AC+H+G+VD G++ F 
Sbjct: 562 ITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFH 621

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKR 382
           SM  ++G+   PD + C VD+LGRAG+L EA  +I  M P + Q + + + L ACR+H+ 
Sbjct: 622 SMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRN 681

Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
           + L E AA  LF L P + A  YV L NIY+A   W+  + +R  M++  V K PG SWI
Sbjct: 682 VPLGEIAAERLFQLEP-DEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWI 740

Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
           E+  V+H F +G+  HPE   +H  +  L +RM+  GY PD    LH + E  K  +L +
Sbjct: 741 ELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRY 800

Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
           HSEKLAIAFGL++ P G  IRV KNLRVC DCH A K+IS +  REI++RD  RFHHF D
Sbjct: 801 HSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVD 860

Query: 563 GTCSCGDYW 571
           G CSCGDYW
Sbjct: 861 GACSCGDYW 869



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 115/217 (52%), Gaps = 8/217 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
            A+++ Y + G +  A  LF+ MP+++ VT+N++IA           L  LR M+  G  
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHP 159

Query: 196 PNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCK--DTTALTPLISMYCKCGDLEDA 252
            ++ +L SVLL CSHL+  L+LG++ H    K+      +  A   L+SMY + G ++DA
Sbjct: 160 LSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDA 219

Query: 253 CKLFLEIQRKD-----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
             LF  +   D     VVTWN M+S   Q G+  +A+ +   M   G++PD ITF + L 
Sbjct: 220 QMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALP 279

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
           AC+   ++ LG +    ++ D  +AA     + +VD+
Sbjct: 280 ACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDM 316


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/483 (39%), Positives = 294/483 (60%), Gaps = 4/483 (0%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L  +A   G++ DA  LFD++P  D  S+NI+L+  L+ S  V  A +
Sbjct: 131 MPQRNVVSWNTMLEAYAAA-GRVGDACALFDRMPVRDAGSWNILLAT-LVRSGSVDKARE 188

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P +D  +W TM+ G  +   + +AR LF +MPE+N VSW+AMISGY    ++D+A
Sbjct: 189 LFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEA 248

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++LF   P + + +   M++G+++   +  A +LFDEMP +N+VTW  M+ GY++   +E
Sbjct: 249 LDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSE 308

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
             L L   M+  G RPN  +    L  CS L++L  GKQVHQ++ K+    D    + L+
Sbjct: 309 LALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALM 368

Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           ++Y KCG++  A KLF   + KD+++WN +I+ YA HG G +A+ L++KM++ G +P+ +
Sbjct: 369 NVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDV 428

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           T+V LL AC+H+GLVD G++ F+SMVND  IA + +HYTC++DL  RAG+L +A  LI  
Sbjct: 429 TYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHY 488

Query: 361 MPFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
           +  KP   +++  LL  C  H    +   AA NL    P N AG Y  L+NIYA+  KW 
Sbjct: 489 LKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDN-AGTYTLLSNIYASAGKWK 547

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
           + A IR  M    + K PG SWIEV   VH F + D+ H E   I+  L+ +   M++ G
Sbjct: 548 EAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHHMMRIVG 607

Query: 480 YVP 482
            VP
Sbjct: 608 TVP 610



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSV 132
           N +I+       +  AR LF   P+ + VSW+A++S Y   G L  A ELF +    ++V
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARRNV 105

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
           V WTA++SGY +   VD AE LF  MP +N+V+WN M+  Y       D   L   M   
Sbjct: 106 VTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM--- 162

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
              P   + S  +L  + + S  + K   +L  + P  +D  A T ++    + G +++A
Sbjct: 163 ---PVRDAGSWNILLATLVRSGSVDK-ARELFGRMPE-RDVMAWTTMVDGVARSGKVDEA 217

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
             LF  +  ++VV+WNAMISGY ++ + ++AL LF KM +  +   +I     +
Sbjct: 218 RVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFI 271



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 23/209 (11%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI+     G + DA KLF      DVV+W A++S YA+ G    A  LFD+      + +
Sbjct: 48  LIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR---PDARRN 104

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +T+ ALL     A LVD     F  M     ++     +  M++    AG++ +A  L 
Sbjct: 105 VVTWTALLSGYARARLVDEAEALFQRMPQRNVVS-----WNTMLEAYAAAGRVGDACALF 159

Query: 359 KKMPFKPQPA---IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
            +MP +   +   +  TL+ +  V K        A  LF   P      +  + +  A  
Sbjct: 160 DRMPVRDAGSWNILLATLVRSGSVDK--------ARELFGRMPERDVMAWTTMVDGVARS 211

Query: 416 KKWDDVARIRLSMKENNVVK----MPGYS 440
            K D+   +  SM E NVV     + GY+
Sbjct: 212 GKVDEARVLFDSMPERNVVSWNAMISGYT 240


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 340/625 (54%), Gaps = 56/625 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML--SCILLNSD- 53
           M V+  V+WN+++A FA Q G    A  ++ ++ Q    P+ +++   L  +C   + D 
Sbjct: 298 MAVRNHVSWNAMIAAFA-QCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDL 356

Query: 54  -DVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            +  A   +     ++ D      +++ +     + +AR  F A+P KN VSW+AM++ Y
Sbjct: 357 GESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAY 416

Query: 112 IECGQLDKAVELFK-----------------------VAPVKSVVA-------------- 134
            + G+  +A+ELF                        V+  +S+ A              
Sbjct: 417 GDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSI 476

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
              ++  + + G ++ A   FD    K+ V+WN  +A           +     M   G 
Sbjct: 477 ANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGF 536

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           RP+  +L SV+  C+ L +L+LG+ + Q L     + +D    + +++M  KCG   D C
Sbjct: 537 RPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDEC 596

Query: 254 -KLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLAC 309
            +LF  +   RKD+V WN MI+ YAQHG G KAL+LF  M+    ++PDS TFV++L  C
Sbjct: 597 ERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGC 656

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           +HAGLV+ GI  F       GI  +P +HY C+VD+LGR G L EA D I+KMP      
Sbjct: 657 SHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSV 716

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++ +LL AC  +  L+  E AA     L  +++ G YV L+NIYAA  +W+D  R+R  M
Sbjct: 717 VWTSLLGACSSYGDLEGGERAARAFIELYRSDSVG-YVVLSNIYAAAGRWEDSIRVREDM 775

Query: 429 KENNVVK-MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
            E  V K +PG S I V   VHEF + DR HP+  +I+ +L+ L+  ++ AGYVPD    
Sbjct: 776 AERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREAGYVPDTRLV 835

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH V EE KEQLL +HSEKLAIAFGLI VP    IRV KNLRVC DCH ATK+I+ + +R
Sbjct: 836 LHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQR 895

Query: 548 EIIVRDTTRFHHF-KDGTCSCGDYW 571
           EI VRD  RFHHF KDG CSCGDYW
Sbjct: 896 EIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 36/373 (9%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM---------PEKNSV- 102
           DD  AAF   +   I   A+WNT+I+    + + A   DL+  M         P K ++ 
Sbjct: 76  DDANAAFSALRSRGI---ATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNKLTII 129

Query: 103 -SWSAMISGYIECGQLDKAVELFKVAPV----------KSVVAWTAMISGYMKFGKVDLA 151
               A+ SG        +A  + +   V          + +   TA++  Y K G V+ A
Sbjct: 130 AVLGAIASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESA 189

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAED-GLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
            ++F  +   +L+ WNA I     N    D  L L+R M   G+ PN +S  ++L  C  
Sbjct: 190 LEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGD 249

Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
            SSL L + +H  V +     D    T L++MY +CG ++++  +F  +  ++ V+WNAM
Sbjct: 250 HSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAM 309

Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-IQYFDSMVNDY 329
           I+ +AQ G    A  ++ +M+ EG +P+ ITFV  L A   +   DLG        +   
Sbjct: 310 IAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACA 369

Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA----CRVHKRLDL 385
           G+       T +V + G  G +  A      +P K     +  +L+A     R  + ++L
Sbjct: 370 GLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTAYGDNGRAREAMEL 428

Query: 386 AEFAAMNLFNLNP 398
             FAAM   +L P
Sbjct: 429 --FAAMKRQSLAP 439



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 14/312 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMI---SGFVQKKNMAK--ARDLFLAMPEKNSVSWSAMIS 109
           V +A + F R+ + D   WN  I   +G  ++ + A    R ++L     N  S+ A++S
Sbjct: 186 VESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILS 245

Query: 110 GYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
              +   L  A  +     ++  +  VV  TA+++ Y + G VD +  +F+ M  +N V+
Sbjct: 246 SCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVS 305

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ--VHQL 223
           WNAMIA + +         +   M   G RPN  +  + L      SS  LG+   +H  
Sbjct: 306 WNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGW 365

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           +  + L  D    T L++MY   G ++ A   F  I  K++V+WNAM++ Y  +G+  +A
Sbjct: 366 IACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREA 425

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + LF  MK + + P+ ++++A+L  C     V         +V +   A +      +V 
Sbjct: 426 MELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARSIHAEVVGNGLFAQESSIANGVVR 482

Query: 344 LLGRAGKLVEAV 355
           +  R+G L EAV
Sbjct: 483 MFARSGSLEEAV 494



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 12/238 (5%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K   +D A   F  + ++ + TWN +IA     +   D    +++      RPN
Sbjct: 65  LVQMYSKCRSLDDANAAFSALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPN 124

Query: 198 ASSLSSVLLGCS----------HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
             ++ +VL   +             S+   + VH  +  S L +D    T L+  Y KCG
Sbjct: 125 KLTIIAVLGAIASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCG 184

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALL 306
            +E A ++F  IQ  D++ WNA I   A +  + ++AL L  +M  EG+ P+  +FVA+L
Sbjct: 185 CVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAIL 244

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
            +C     + L  +   + V + G        T +V + GR G + E++ + + M  +
Sbjct: 245 SSCGDHSSLPLA-RSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVR 301



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +L+ +L  C   + L  G+Q+H+ + K  L ++      L+ MY KC  L+DA   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KPDSITFVALLLA 308
           + + + TWN +I   A          L+ +MK E     +P+ +T +A+L A
Sbjct: 86  RSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGA 134


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/519 (38%), Positives = 302/519 (58%), Gaps = 11/519 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKA 120
           F+ +P KD  SW T+I+G+ Q +    A +L   +  EK  V    + S  + C  L K+
Sbjct: 410 FEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGL-KS 468

Query: 121 VELFKV-------APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            +L K          +  ++   A+++ Y +   VD A  +F+ + +K++V+W +MI   
Sbjct: 469 EKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCC 528

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V N  A + L+L   +I   I P+  +L SVL   + LSSL+ GK++H  + +     + 
Sbjct: 529 VHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEG 588

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                L+ MY +CG +E+A  +F  ++++D++ W +MI+    HG G+ A+ LF KM DE
Sbjct: 589 LIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDE 648

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + PD ITF+ALL AC+H+GLV  G Q+F+ M N+Y +   P+HY C+VDLL R+  L E
Sbjct: 649 NVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEE 708

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A   ++ MP +P   ++  LL ACR+H   DL E AA  L  LN  N +G YV ++N +A
Sbjct: 709 AYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTEN-SGNYVLVSNTFA 767

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  +W+DV  +R  MK N + K PG SWIEV   +H F + D+ HP+  +I+ KL +  K
Sbjct: 768 ADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTK 827

Query: 474 RMK-LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            +K   GY    +   H V EE K Q+L  HSE+LA+ +GL+    GT +R+ KNLR+C 
Sbjct: 828 LLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICD 887

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K  S I +R ++VRD +RFHHF+ G CSCGD+W
Sbjct: 888 DCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 63/326 (19%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV--AWT---------- 136
           A  +F  M E+   +W+AMI   +  G+  +A+EL+K   V  V   A+T          
Sbjct: 101 AVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGA 160

Query: 137 ---------------------------AMISGYMKFGKVDLAEKLFDE--MPTKNLVTWN 167
                                      A+I+ Y K G +  A  LFD   M   + V+WN
Sbjct: 161 FKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWN 220

Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
           ++I+ +V    + + L L R M  +G+  N  +  S L  C   + +++G+ +H ++ KS
Sbjct: 221 SIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKS 280

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
               D      LI+MY  CG +EDA ++F  +  KD V+WN ++SG  Q+     A+  F
Sbjct: 281 NHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHF 340

Query: 288 DKMKDEGMKPDSITFVALLLACNH-----AGL----------VDLGIQYFDSMVNDYGIA 332
             M+D G KPD ++ + ++ A        AG+          +D  +   +S+++ YG  
Sbjct: 341 QDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYG-- 398

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLI 358
                  C V  +G A + +   DLI
Sbjct: 399 -----KCCCVKYMGSAFEYMPEKDLI 419



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
           + SV   T  +  Y K G    A K+FD+M  + + TWNAMI   V      + ++L + 
Sbjct: 79  LDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKE 138

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M  LG+  +A +   VL  C      +LG ++H +  K            LI+MY KCGD
Sbjct: 139 MRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGD 198

Query: 249 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           L  A  LF    +++ D V+WN++IS +   G+  +AL LF +M++ G++ ++ TFV+ L
Sbjct: 199 LGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSAL 258

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT------CMVDLLGRAGKLVEAVDLIKK 360
            AC     + +G          + +  K +H+T       ++ +    G++ +A  + K 
Sbjct: 259 QACEGPTFIKIG-------RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKS 311

Query: 361 MPFKPQPAIFGTLLSA 376
           M FK   + + TLLS 
Sbjct: 312 MLFKDCVS-WNTLLSG 326



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 152/333 (45%), Gaps = 43/333 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISG-----YIECGQLDK 119
           D  SWN++IS  V +    +A  LF  M E     N+ ++ + +       +I+ G+   
Sbjct: 215 DPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIH 274

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           AV + K      V    A+I+ Y   G+++ AE++F  M  K+ V+WN +++G V+N   
Sbjct: 275 AV-ILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMY 333

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            D +   + M   G +P+  S+ +++      ++L  G +VH    K  +  +      L
Sbjct: 334 SDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSL 393

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I MY KC  ++     F  +  KD+++W  +I+GYAQ+     AL L  K++ E M  D 
Sbjct: 394 IDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDP 453

Query: 300 ITFVALLLACN----------------HAGLVDLGIQYFDSMVNDYGIAAKPDH------ 337
           +   ++LLAC+                  GL D+ IQ  +++VN YG  A  D+      
Sbjct: 454 MMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQ--NAIVNVYGELALVDYARHVFE 511

Query: 338 ---------YTCMVDLLGRAGKLVEAVDLIKKM 361
                    +T M+      G  +EA++L   +
Sbjct: 512 SINSKDIVSWTSMITCCVHNGLAIEALELFNSL 544



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACK 254
           P   + S  L  C+   +L  G+Q+H    K+    D+  L T  + MY KCG   DA K
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +F ++  + + TWNAMI      G+  +A+ L+ +M+  G+  D+ TF  +L AC
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 13/176 (7%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMISGFV 81
           A+ +F+ I   D+VS+  M++C + N    + A + F  L       D  +  +++    
Sbjct: 506 ARHVFESINSKDIVSWTSMITCCVHNG-LAIEALELFNSLIETNIEPDLITLVSVLYAAA 564

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
              ++ K +++   +  K      +  ++++  Y  CG ++ A  +F     + ++ WT+
Sbjct: 565 ALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTS 624

Query: 138 MI--SGYMKFGK--VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
           MI  +G    GK  +DL  K+ DE    + +T+ A++     +    +G +   +M
Sbjct: 625 MINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIM 680


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 327/550 (59%), Gaps = 14/550 (2%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWN 74
           + G + +A+    KI + D+   ++ L  +L+N+      V  A   F  +  +   SWN
Sbjct: 65  RNGAVMEAKACHGKIIRIDLEG-DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 123

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVA--PVKS 131
           TMI  + + +  ++A D+FL M  +        IS  +  CG    A+E  K+    VK+
Sbjct: 124 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 183

Query: 132 VV-----AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
            +       TA++  Y K G +  A ++F+ M  K+ VTW++M+AGYV+N   E+ L L 
Sbjct: 184 CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLY 243

Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           R    + +  N  +LSSV+  CS+L++L  GKQ+H ++ KS    +    +  + MY KC
Sbjct: 244 RRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKC 303

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G L ++  +F E+Q K++  WN +ISG+A+H + ++ + LF+KM+ +GM P+ +TF +LL
Sbjct: 304 GSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLL 363

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             C H GLV+ G ++F  M   YG++    HY+CMVD+LGRAG L EA +LIK +PF P 
Sbjct: 364 SVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPT 423

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            +I+G+LL++CRV+K L+LAE AA  LF L P N AG +V L+NIYAA K+W+++A+ R 
Sbjct: 424 ASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN-AGNHVLLSNIYAANKQWEEIAKSRK 482

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            +++ +V K+ G SWI++   VH F  G+  HP +  I   L  L  + +  GY P +E 
Sbjct: 483 LLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEH 542

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            LH V    KE+LL+ HSEKLA+ FGL+ +P  +P+R+ KNLR+C DCH   K  S   +
Sbjct: 543 ELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATR 602

Query: 547 REIIVRDTTR 556
           R IIVRD  R
Sbjct: 603 RFIIVRDVNR 612



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N + +  +L  C+   ++   K  H  + +  L  D T L  LI+ Y KCG +E A ++F
Sbjct: 52  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 111

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
             +  + +V+WN MI  Y ++    +AL +F +M++EG K    T  ++L AC
Sbjct: 112 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 117/271 (43%), Gaps = 47/271 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K++V W+S++AG+  Q    ++A  L+ +  +  +      LS ++    ++ A  +
Sbjct: 215 MQDKSSVTWSSMVAGYV-QNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 273

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q   +          SGF          ++F+A         S+ +  Y +CG L ++
Sbjct: 274 GKQMHAV-------ICKSGF--------GSNVFVA---------SSAVDMYAKCGSLRES 309

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVEN 176
             +F     K++  W  +ISG+ K  +      LF++M       N VT++++++     
Sbjct: 310 YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 369

Query: 177 SWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
              E+G +  ++M    G+ PN    S +  +LG + L S     + ++L+   P     
Sbjct: 370 GLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS-----EAYELIKSIP----- 419

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
               P  S++   G L  +C+++  ++  +V
Sbjct: 420 --FDPTASIW---GSLLASCRVYKNLELAEV 445


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 334/587 (56%), Gaps = 26/587 (4%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCI----LLNSDDVV 56
           +   WN+VL+G A+  G+ ++A    + + D+  QPD  S + +L  +    LL     +
Sbjct: 286 SLATWNAVLSGCARN-GRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHG--M 342

Query: 57  AAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
            A  FF R  ++ D  +    +  + +  ++  A+ +F  +  +N  +W+++++GY   G
Sbjct: 343 EAHGFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAG 402

Query: 116 QLDKAVELF------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVT 165
           Q D A++L       ++ P   V  W  +I+GY   GK   A  L  ++     T N+V+
Sbjct: 403 QFDHALDLVEEMKRNRLDP--DVTTWNGLINGYSVNGKSSQAVLLLRQIKAIGLTPNVVS 460

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W ++I+G   N   ED       M    ++P+  ++S +L  C+ L+ L+ GK++H    
Sbjct: 461 WTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFAL 520

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
           +    +D    T LI MY K G+L  A ++F  IQ  ++V+ NAM++G A HG+G +A+ 
Sbjct: 521 RRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIA 580

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           LF  M + G+KPDSITF ALL AC    LV  G +YFD+M + YG+    ++Y CMVDLL
Sbjct: 581 LFHDMCNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLL 640

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
            R G L EA+D I K PFK   +++G LL+ C +H  L LAE AA  LF L P N+A  Y
Sbjct: 641 ARCGYLDEAMDFINKSPFKSVSSLWGALLTGCTLHGNLALAEAAARKLFKLEPYNSAN-Y 699

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           +Q+ ++Y   + +D+   ++ +MK   +   PG+SWI++   +H F    + HP+   I+
Sbjct: 700 LQMVSLYEHEQMFDEAESLKYAMKARALDTRPGWSWIQIEQSIHVFEVEGKPHPDTAEIY 759

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRV 524
           E+L  L  +++ +GYVPD    ++ V EE KE+LLL H+EKLAI +GLI       PIRV
Sbjct: 760 EELIRLVFQIRKSGYVPDTSCIVYNVPEEEKEKLLLSHTEKLAITYGLIHSDASRVPIRV 819

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KN R+C DCH   K+ISA+  R+II+RD  RFH+F DG CSC + W
Sbjct: 820 IKNTRMCNDCHELAKHISALCARQIILRDADRFHYFTDGKCSCNNCW 866



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 11/209 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK--- 161
           + M +   + G   + +E     PV    AW  +++   + G VD A  L + M      
Sbjct: 226 AGMYAESADVGAARRVLETEDAPPV----AWNVVVACCARLGLVDDALDLAERMARSGRL 281

Query: 162 ----NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
               +L TWNA+++G   N    +   ++R+M+  G++P++SS+SS+L   + L  L  G
Sbjct: 282 ELEPSLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHG 341

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
            + H    ++ L  D    T  + MY KCG LE A K+F  ++ +++ TWN++++GYA  
Sbjct: 342 MEAHGFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANA 401

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G+ + AL L ++MK   + PD  T+  L+
Sbjct: 402 GQFDHALDLVEEMKRNRLDPDVTTWNGLI 430



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 140/317 (44%), Gaps = 33/317 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           + ++    WNS++AG+A   G+   A +L +++ +    PDV ++N +++   +N     
Sbjct: 383 LELRNITTWNSLVAGYANA-GQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQ 441

Query: 57  AAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           A     Q   I    +  SW ++ISG     +   +   F  M     + + V+ S ++ 
Sbjct: 442 AVLLLRQIKAIGLTPNVVSWTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLR 501

Query: 110 GYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
                  L K  EL     + A  + +V  TA+I  Y K G +  A+++F+ +   NLV+
Sbjct: 502 ACAGLALLKKGKELHCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVS 561

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
            NAM+ G   +    + + L   M   G++P++ + +++L  C  +  +  G +    + 
Sbjct: 562 SNAMLTGLAAHGQGHEAIALFHDMCNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTM- 620

Query: 226 KSPLCKDTTALTPLISMY-------CKCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQH 277
                +    +TP +  Y        +CG L++A     +   K V + W A+++G   H
Sbjct: 621 -----ESRYGVTPTVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSLWGALLTGCTLH 675

Query: 278 GK---GEKALRLFDKMK 291
           G     E A R   K++
Sbjct: 676 GNLALAEAAARKLFKLE 692



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 51/245 (20%)

Query: 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           V WN  +A   E     D +     M   G+ P+  + +  L  C    + + G+ VH  
Sbjct: 149 VLWNKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAH 208

Query: 224 VFKSPLCKDTTALTPLI-----SMYCKCGDL----------------------------- 249
             K+       A  PL+      MY +  D+                             
Sbjct: 209 AAKA----GHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGL 264

Query: 250 -EDACKLFLEIQRK-------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            +DA  L   + R         + TWNA++SG A++G+  +A  +   M D+G++PDS +
Sbjct: 265 VDDALDLAERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSS 324

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIK 359
             +LL +    GL+  G++     + +     +PD Y  T  VD+  + G L  A  +  
Sbjct: 325 MSSLLKSVASLGLLAHGMEAHGFFLRNQ---LEPDVYTGTAFVDMYAKCGHLEYAQKVFD 381

Query: 360 KMPFK 364
            +  +
Sbjct: 382 TLELR 386


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/616 (35%), Positives = 321/616 (52%), Gaps = 50/616 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++ V W +++AG + Q G+   A   F  + +  +   +    C    S  + +     Q
Sbjct: 71  RSVVTWTALIAG-SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQ 129

Query: 64  -------RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                     I D     +    + +     +AR +F  MPE+N  +W+A +S  +  G+
Sbjct: 130 VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGR 189

Query: 117 LDKAVELF---------------------------------------KVAPVKSVVAWTA 137
            D A+  F                                       +      V     
Sbjct: 190 YDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANG 249

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           +I  Y K  +V  +E +F  +   N V+W +MI  YV+N   E    +       GI P 
Sbjct: 250 LIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPT 309

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
              +SSVL  C+ LS L++GK VH L  K+ +  +    + L+ MY KCG +EDA + F 
Sbjct: 310 DFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFD 369

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK--DEGMKPDSITFVALLLACNHAGLV 315
           E+  +++VTWNAMI GYA  G+ + A+ LFD+M      + P+ +TFV +L AC+ AG V
Sbjct: 370 EMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSV 429

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           ++G++ F+SM   YGI    +HY C+VDLLGRAG + +A   IKKMP +P  +++G LL 
Sbjct: 430 NVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLG 489

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           A ++  + +L + AA NLF L+P ++ G +V L+N++AA  +W++   +R  MK+  + K
Sbjct: 490 ASKMFGKSELGKVAADNLFELDPLDS-GNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKK 548

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
             G SWI  G  VH F++ D  H     I   L +L   M+ AGY+PD  FAL  + EE 
Sbjct: 549 GAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEE 608

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           K   + +HSEK+A+AFGLI +P G PIR+ KNLR+CGDCH A K+IS I  REIIVRD  
Sbjct: 609 KAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNN 668

Query: 556 RFHHFKDGTCSCGDYW 571
            FH F+D  CSC DYW
Sbjct: 669 LFHRFRDNQCSCRDYW 684



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 9/305 (2%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDK 119
           P +   +W  +I+G VQ      A   F  M      P   +   +   SG +    + K
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 120 AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
            V     K   +  V    +    Y K G  + A K+FDEMP +N+ TWNA ++  V   
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
             +D L         G  PN  +  + L  C+  S L+LG+Q+H  V +S    D +   
Sbjct: 189 RYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVAN 248

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            LI  Y KC  +  +  +F  I + + V+W +MI  Y Q+ + EKA  +F + + EG++P
Sbjct: 249 GLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEP 308

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
                 ++L AC    ++++G +   ++     +       + +VD+ G+ G + +A   
Sbjct: 309 TDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERA 367

Query: 358 IKKMP 362
             +MP
Sbjct: 368 FDEMP 372



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 121/258 (46%), Gaps = 8/258 (3%)

Query: 96  MPEKNSVSWSAMISGYI--ECGQLDKAV--ELFKV--APVKSVVAWTAMISGYMKFGKVD 149
           MP  +  S ++++   +  +C +L +A   ++ K    P+ S + +  +++ Y K  + +
Sbjct: 1   MPFLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFI-YNHLVNMYSKLDRPN 59

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A+ L    P +++VTW A+IAG V+N      L     M    I+PN  +         
Sbjct: 60  SAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASG 119

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            L S  +GKQVH L  K+    D         MY K G  E+A K+F E+  +++ TWNA
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
            +S     G+ + AL  F + + EG +P+ ITF A L AC  A  + LG Q     V   
Sbjct: 180 YLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQ-LHGFVLQS 238

Query: 330 GIAAKPDHYTCMVDLLGR 347
           G  A       ++D  G+
Sbjct: 239 GFEADVSVANGLIDFYGK 256


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/554 (37%), Positives = 324/554 (58%), Gaps = 14/554 (2%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           +G++  A  +   I + D+V  N +L+ +      +  A   F+++P +D  +W T+ISG
Sbjct: 78  QGRIVHAH-ILQSIFRHDIVMGNTLLN-MYAKCGSLEEARKVFEKMPQRDFVTWTTLISG 135

Query: 80  FVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIE-----CGQLDKAVELFKVAPVK 130
           + Q      A   F  M       N  + S++I          CG         K     
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF-CVKCGFDS 194

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           +V   +A++  Y ++G +D A+ +FD + ++N V+WNA+IAG+   S  E  L+L + M+
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
             G RP+  S +S+   CS    L+ GK VH  + KS       A   L+ MY K G + 
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           DA K+F  + ++DVV+WN++++ YAQHG G++A+  F++M+  G++P+ I+F+++L AC+
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
           H+GL+D G  Y++ M  D GI  +  HY  +VDLLGRAG L  A+  I++MP +P  AI+
Sbjct: 375 HSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433

Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
             LL+ACR+HK  +L  +AA ++F L+P +  G +V L NIYA+  +W+D AR+R  MKE
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKE 492

Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
           + V K P  SW+E+   +H F + D  HP+   I  K +E+  ++K  GYVPD    +  
Sbjct: 493 SGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVH 552

Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
           V ++ +E  L +HSEK+A+AF L+  P G+ I + KN+RVCGDCH A K  S +  REII
Sbjct: 553 VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612

Query: 551 VRDTTRFHHFKDGT 564
           VRDT RFHHFKD +
Sbjct: 613 VRDTNRFHHFKDAS 626



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 43/271 (15%)

Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
           +++L  C+    L  G+ VH  + +S    D      L++MY KCG LE+A K+F ++ +
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123

Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--------CNH-- 311
           +D VTW  +ISGY+QH +   AL  F++M   G  P+  T  +++ A        C H  
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 312 ----------------AGLVDLGIQY---------FDSMVNDYGIAAKPDHYTCMVDLLG 346
                           + L+DL  +Y         FD++ +   ++     +  ++    
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHA 238

Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           R     +A++L + M    F+P    + +L  AC     L+  ++    +        A 
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
               L ++YA      D  +I   + + +VV
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 329



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 149/330 (45%), Gaps = 36/330 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIML----SCILLNS 52
           +  +  V+WN+++AG A++ G  K A ELF  +     +P   SY  +     S   L  
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEK-ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQ 280

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V A+       +   A  NT++  + +  ++  AR +F  + +++ VSW+++++ Y 
Sbjct: 281 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339

Query: 113 ECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV--TW 166
           + G   +AV    E+ +V    + +++ ++++     G +D     ++ M    +V   W
Sbjct: 340 QHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAW 399

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           + +    +    A D  + LR +  + I P A+   ++L  C    + +LG    + VF+
Sbjct: 400 HYVTVVDLLGR-AGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFE 458

Query: 227 -SPLCKDTTALTPLISMYCKCGDLEDACKLFLE-----IQRKDVVTW----NAM---ISG 273
             P   D      L ++Y   G   DA ++  +     ++++   +W    NA+   ++ 
Sbjct: 459 LDP--DDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAN 516

Query: 274 YAQHGKGEKALRLFD----KMKDEGMKPDS 299
             +H + E+  R ++    K+K+ G  PD+
Sbjct: 517 DERHPQREEIARKWEEVLAKIKELGYVPDT 546


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/584 (35%), Positives = 332/584 (56%), Gaps = 18/584 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVVAA- 58
           K   +W ++L     Q G+ ++A  LF ++     QP  VS+   ++      + + A  
Sbjct: 98  KNVFSW-TILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGR 156

Query: 59  --FDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                 +R   +D     T ++S + +  ++ ++   F +M E N+VSW+AMI+ + E  
Sbjct: 157 ALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHR 216

Query: 116 QLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           +  +A+   +      +     VV  T +++ Y K   +  A   F ++   N++TWN +
Sbjct: 217 RGLEALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVL 276

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+ YV++   ++ ++L R M+ LG+  +  +  ++L  C    +L+ G+ +H  V + PL
Sbjct: 277 ISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPL 336

Query: 230 CKDTTALTPLI-SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
             +   L  +I +MY KCG L+DA  +F  + + DV+ WN MI+ Y QHG   +ALR ++
Sbjct: 337 ASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYE 396

Query: 289 KMKDEGMKPDSITFVALLLA-CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347
            M++EG+ PD  T+V+++ A C +AGL +    YF SM  D+G+     HY CMV+ LG+
Sbjct: 397 LMQEEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGK 456

Query: 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407
           AG+L +A  LI+ MPF+P    + + L+ CR H  +   + AA     ++P  + G YV 
Sbjct: 457 AGRLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTG-YVA 515

Query: 408 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 467
           LA I+A    + + +RIR  M +  + K  G S I++GT V+EF +GD+ +P    I ++
Sbjct: 516 LARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDE 575

Query: 468 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 527
           LK L+K MK AGY PD+    H V    KE LL  HSE+LAIAFG+I    GTP+R+ KN
Sbjct: 576 LKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGTPLRIMKN 635

Query: 528 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           LRVCGDCH  TK  S I +REIIVRD+ RFHHFK+G+CSC D+W
Sbjct: 636 LRVCGDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 679



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 156/350 (44%), Gaps = 80/350 (22%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF--------- 124
           N ++  + +  ++ +AR +F A P KN  SW+ +I+   + G+  +A+ LF         
Sbjct: 73  NHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQ 132

Query: 125 -------------------------------KVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
                                          +     +VVA T+++S Y K G ++ + +
Sbjct: 133 PHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESMR 192

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
            F+ M   N V+WNAMIA + E+    + L+ L+ M   GIR                  
Sbjct: 193 TFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRA----------------- 235

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
                           C D    T L++MY KC  L DA   F+++Q  +++TWN +IS 
Sbjct: 236 ----------------CSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISA 279

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           Y QH   ++A+ LF +M   G++ D +TF+ +L AC     ++ G +   + V ++ +A+
Sbjct: 280 YVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDG-RAIHACVREHPLAS 338

Query: 334 KPDHY---TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
             +H      ++++ G+ G L +A  + K M  +P    + T+++A   H
Sbjct: 339 --NHAPLENVILNMYGKCGSLQDAEAMFKSMS-QPDVIAWNTMIAAYGQH 385



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 3/233 (1%)

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           V+  C+ L +L  G+++HQL+ +  L  D      L+ MY KCG LE+A  +F     K+
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323
           V +W  +I+  AQHG+ ++AL LF +M  +G++P S++F A + AC+         +   
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR- 382
           +++  YG        T +V +  + G L E++   + M  +P    +  +++A   H+R 
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMT-EPNAVSWNAMIAAFAEHRRG 218

Query: 383 -LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
              L     M L  +   +       L N+YA      D     + ++E N++
Sbjct: 219 LEALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNII 271



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 127/308 (41%), Gaps = 44/308 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-------D 53
           M     V+WN+++A FA+ R  L+  + L     +      ++++   L+N         
Sbjct: 197 MTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLH 256

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMIS 109
           D  AAF   Q   I    +WN +IS +VQ     +A +LF  M     E + V++  ++ 
Sbjct: 257 DANAAFVKLQEPNI---ITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINILG 313

Query: 110 GYIECGQLDKAVELFKV----------APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
                  L+    +             AP+++V+     ++ Y K G +  AE +F  M 
Sbjct: 314 ACCVPVALEDGRAIHACVREHPLASNHAPLENVI-----LNMYGKCGSLQDAEAMFKSMS 368

Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL-LGCSHLSSLQLGK 218
             +++ WN MIA Y ++    + L+   +M   G+ P+  +  SV+   C++     L +
Sbjct: 369 QPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAG---LPE 425

Query: 219 QVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAM 270
           + H         +    + P       ++    K G L DA  L   +    DV+TW + 
Sbjct: 426 EAHAYFVSM---QQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQCMPFEPDVLTWTSF 482

Query: 271 ISGYAQHG 278
           ++    HG
Sbjct: 483 LANCRSHG 490


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/630 (33%), Positives = 328/630 (52%), Gaps = 81/630 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG- 79
           G L DA+++F   P  +VVS+ I++S +  N D  V A D F+ + + +       IS  
Sbjct: 70  GLLADAKQIFHHTPYKNVVSWTILISGLAKN-DCFVEAIDVFREMIMGNFKPNAVTISSV 128

Query: 80  -----------------------------FVQKK---------NMAKARDLFLAMPEKNS 101
                                        FV+            M  AR LF +M E+N 
Sbjct: 129 LPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVA--------------------------- 134
           V+W+A++SGY + G  ++A++LF +   K ++                            
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 135 ------------WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
                        TA++  Y+    VD A ++F EM  K++  W  M+ G+      +  
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 183 LKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
           +K    M+G+  ++ ++ +L  +L  CSH  +LQ G++VH L  K+    +    + +I 
Sbjct: 309 IKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           MY  CG+LEDA + F  +  KDVV WNAMI+G   +G G  A+ LF +MK  G+ PD  T
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           FV++L AC+HAG+V  G+Q F  MV    +     HY C++D+LGRAG+L  A   I  M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
           PF+P   ++ TLL ACR+H  + L    +  +F + P N AG YV L+N+YA    W+ V
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEP-NDAGYYVLLSNMYALAGNWEGV 547

Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
              R S++   + K PG+S IE+   ++ F +G++ HP+   I   LK L  ++K AGYV
Sbjct: 548 KMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYV 607

Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
           P+    L  V +++K+ +L  HSEK+AIAFGL++    T IR+ KNLR C DCH A+K++
Sbjct: 608 PNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFV 667

Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           S +  R ++++D  RFH F+DG CSC DYW
Sbjct: 668 SKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 167/318 (52%), Gaps = 14/318 (4%)

Query: 14  AGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKD 69
           A   ++   LK  Q++  +I    + ++N  LS  L+N+      +  A   F   P K+
Sbjct: 28  ASILRKLKDLKPLQQIHAQIITSGL-THNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKN 86

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECG--QLDKAVEL 123
             SW  +ISG  +     +A D+F  M     + N+V+ S+++  +   G  ++ K+V  
Sbjct: 87  VVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHC 146

Query: 124 FKV--APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           F V      +V   TA++  Y KFG + +A +LF+ M  +N+VTWNA+++GY ++ ++E+
Sbjct: 147 FWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEE 206

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            + L  +M   G+  +  ++ S++     +  LQ+G  +H  + ++    D    T L+ 
Sbjct: 207 AIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMD 266

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSI 300
           +Y     ++DA ++F E+  KDV  W  M++G++     ++A++ F+KM   + +K DSI
Sbjct: 267 IYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSI 326

Query: 301 TFVALLLACNHAGLVDLG 318
             + +L +C+H+G +  G
Sbjct: 327 ALMGILSSCSHSGALQQG 344


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/614 (36%), Positives = 325/614 (52%), Gaps = 51/614 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCIL---LNSDDVVA 57
            V WN+++     Q G  ++A E+F ++ Q    PD+V++ ++  +C     L +  V  
Sbjct: 195 VVLWNAMITA-NSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKG 253

Query: 58  AFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                    +  D      +++ + +   +  AR+ F AMPE+N+VSW++MI+ + + G 
Sbjct: 254 FHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGH 313

Query: 117 LDKAVELFK------VAPVKS--------------------------VVAWTAMISGY-M 143
           L  AVE F       V P +S                          V    A+++   M
Sbjct: 314 L-LAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVM 372

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNA-----MIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
            + + D  E        +    W+A     MIA Y +        KL    I  GI P+ 
Sbjct: 373 AYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDR 432

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFL 257
               + L  C+ L++L  G+Q+H  V     L +D T    ++SMY +CG L DA   F 
Sbjct: 433 ILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFD 492

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +D ++WNAM+S  AQHG+ E    LF  M  EG   + + F+ LL AC HAGLV+ 
Sbjct: 493 GMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEA 552

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G ++F +M  D+G+    +HY CMVDLLGR G+L +A  +++ MP  P  A +  L+ AC
Sbjct: 553 GCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGAC 612

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R++   +   FAA  +  L  AN    YV L NIY+A  +W+D A +R  M +  + K+P
Sbjct: 613 RIYGDTERGRFAAERVLELR-ANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIP 671

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S IE+ + VHEF   DR HP+  +I+ +L+ +   ++ AGY       LH V EE KE
Sbjct: 672 GVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKE 731

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           QLL FHSEKLAIAFG++  P G+ +RV KNLRVC DCH A+K+IS +  REI+VRD  RF
Sbjct: 732 QLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRF 791

Query: 558 HHFKDGTCSCGDYW 571
           HHFKDG CSCGDYW
Sbjct: 792 HHFKDGACSCGDYW 805



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 148/293 (50%), Gaps = 10/293 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           ++++  Y++ G ++ A  +F ++  K++V W  +I+ YV    +   + L   ++  GI 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIA 125

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +A    SVL  CS    L  G+ +H+   ++ L       + L+SMY +CG L DA  L
Sbjct: 126 LDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANAL 185

Query: 256 FLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-G 313
           F  ++R  DVV WNAMI+  +Q+G   +AL +F +M   G+ PD +TFV++  AC+ +  
Sbjct: 186 FGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPS 245

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L    ++ F + +++ G+ +     T +V+   R G++  A +    MP +   +    +
Sbjct: 246 LRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMI 305

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            +  ++   L +  F AM L  + P          + ++AA++  +D+   RL
Sbjct: 306 AAFAQIGHLLAVETFHAMLLEGVVPTR--------STLFAALEGCEDLHTARL 350



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 14/273 (5%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWS 105
           L    + +A D F ++  K    W  +IS +V + + A A  LF  + ++    +++ + 
Sbjct: 73  LRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFV 132

Query: 106 AMISG-----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
           +++S      ++  G+L     +     ++ +VA +A++S Y + G +  A  LF  +  
Sbjct: 133 SVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVA-SALVSMYGRCGSLRDANALFGHLER 191

Query: 161 K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-- 217
             ++V WNAMI    +N    + L++   M+ LGI P+  +  SV   CS   SL+    
Sbjct: 192 HLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQV 251

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K  H  + ++ L  D    T L++ Y +CG+++ A + F  +  ++ V+W +MI+ +AQ 
Sbjct: 252 KGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQI 311

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           G    A+  F  M  EG+ P   T  A L  C 
Sbjct: 312 GH-LLAVETFHAMLLEGVVPTRSTLFAALEGCE 343



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 1/146 (0%)

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    + L+ MY +CG LE A  +F +I  K +V W  +IS Y   G    A+ LF ++
Sbjct: 60  RDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             EG+  D+I FV++L AC+    +  G +       + G+  +    + +V + GR G 
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGS 178

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSA 376
           L +A  L   +       ++  +++A
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMITA 204


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 295/512 (57%), Gaps = 11/512 (2%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           K T  +N ++SG+V     ++A  LF  M E+    NSV+   +I   +    L+    L
Sbjct: 115 KLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL 174

Query: 124 ----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                K      V      I+ YMK G V+ A+KLFDEMP K L++WNAM++GY +N  A
Sbjct: 175 HCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLA 234

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + L+L R M   G+ P+  +L  VL  C++L +  +G +V   +  S    +      L
Sbjct: 235 TNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNAL 294

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I+MY +CG+L  A  +F  +  + +V+W A+I GY  HG GE A++LF +M   G++PD 
Sbjct: 295 INMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 354

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
             FV +L AC+HAGL D G++YF  M  +Y +   P+HY+CMVDLLGRAG+L EA  LI+
Sbjct: 355 TAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIE 414

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP KP  A++G LL AC++HK ++LAE A   +  L P N  G YV L+NIY+      
Sbjct: 415 SMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPEN-IGYYVLLSNIYSNANNSK 473

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
            V RIR+ MKE  + K PG S++E+   VH F  GDR H +   I+  L+ELE  +    
Sbjct: 474 GVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEF 533

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
             P+ +    +  +      +  HSEKLA+AFGL+    G  + + KNLR+C DCH   K
Sbjct: 534 GKPEKDNREESNKDGFTR--VGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFK 591

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +S I  R++ VRD TRFHHF++G+CSC DYW
Sbjct: 592 MVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAV---- 121
           +  WNT +    ++    +A  L+  M       N+ ++   +     C  L   +    
Sbjct: 14  STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALK---SCAALSLPILGSQ 70

Query: 122 ---ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE--MPTKNLVTWNAMIAGYVEN 176
              ++ KV  V      T +IS Y K   VD A K+F+E     K  V +NA+++GYV N
Sbjct: 71  FHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSN 130

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
           S   + + L R M   G+  N+ +L  ++  C    +L+LG  +H    K     D + +
Sbjct: 131 SKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVV 190

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
              I+MY KCG +  A KLF E+  K +++WNAM+SGYAQ+G     L L+  M   G+ 
Sbjct: 191 NCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVH 250

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           PD +T V +L +C + G   +G +  +  +   G  + P     ++++  R G L +A  
Sbjct: 251 PDPVTLVGVLSSCANLGAQSVGHE-VEFKIQASGFTSNPFLNNALINMYARCGNLTKAQA 309

Query: 357 LIKKMP 362
           +   MP
Sbjct: 310 VFDGMP 315



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN  +    +       L L   M+  G RPNA +    L  C+ LS   LG Q H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKA 283
           K     +    T LISMYCK   +++A K+F E    RK  V +NA++SGY  + K  +A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + LF +M +EG+  +S+T + L+ AC     ++LG     S +  YG  +      C + 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL-KYGFDSDVSVVNCFIT 195

Query: 344 LLGRAGKLVEAVDLIKKMPFK 364
           +  + G +  A  L  +MP K
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVK 216



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 127/280 (45%), Gaps = 13/280 (4%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DV   N  ++ + +    V  A   F  +P+K   SWN M+SG+ Q        +L+  M
Sbjct: 186 DVSVVNCFIT-MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM 244

Query: 97  P----EKNSVSWSAMISGYIECGQLDKAVEL-FKVAP---VKSVVAWTAMISGYMKFGKV 148
                  + V+   ++S     G      E+ FK+       +     A+I+ Y + G +
Sbjct: 245 DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNL 304

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A+ +FD MP + LV+W A+I GY  +   E  ++L + MI  GI P+ ++   VL  C
Sbjct: 305 TKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC 364

Query: 209 SHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVT 266
           SH      G +  +++ ++  L       + ++ +  + G L++A  L   +  K D   
Sbjct: 365 SHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV 424

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           W A++     H   E A   F+++ +  ++P++I +  LL
Sbjct: 425 WGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLL 462



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 16/136 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNSDDV 55
           M VK  ++WN++++G+A Q G   +  EL+  +      PD V+   ++ SC  L +  V
Sbjct: 213 MPVKGLISWNAMVSGYA-QNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 271

Query: 56  VAAFDF------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
               +F      F   P  +    N +I+ + +  N+ KA+ +F  MPE+  VSW+A+I 
Sbjct: 272 GHEVEFKIQASGFTSNPFLN----NALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIG 327

Query: 110 GYIECGQLDKAVELFK 125
           GY   G  + AV+LFK
Sbjct: 328 GYGMHGHGEIAVQLFK 343


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 300/529 (56%), Gaps = 38/529 (7%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAM 107
           S D+  A   F+ +P KD   W+ MI+ + Q     +A ++F  M +     N  +++++
Sbjct: 288 SGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASV 347

Query: 108 ISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
           +        L+   ++     K+     V    A++  Y K G+++ +  LF E P +N 
Sbjct: 348 LQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRND 407

Query: 164 VT-WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           VT WN +I G+V+    E  L+L   M+   ++    + SS L  C+ L++L+ G Q+H 
Sbjct: 408 VTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHS 467

Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
           L  K+   KD      LI MY KCG ++DA  +F  + ++D V+WNAMISGY+ HG    
Sbjct: 468 LTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG---- 523

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
                                   LAC +AGL+D G  YF SM+ D+GI    +HYTCMV
Sbjct: 524 ------------------------LACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMV 559

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
            LLGR G L +AV LI ++PF+P   ++  LL AC +H  ++L   +A ++  + P + A
Sbjct: 560 WLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKA 619

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
             +V L+N+YA  K+WD+VA +R +MK   V K PG SWIE    VH F  GD  HPE+ 
Sbjct: 620 -THVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVR 678

Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
            I+  L+ L  + K AGY+P+    L  V +E KE+LL  HSE+LA++FG+I+ P G+PI
Sbjct: 679 VINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPI 738

Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           R+ KNLR+C DCH A K IS + +REI+VRD  RFHHF++G CSCGDYW
Sbjct: 739 RIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 182/346 (52%), Gaps = 10/346 (2%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D+ ++NI+L+ + + SD +  A   F  +P ++T S+ T+I G+ +     +A +LF+ +
Sbjct: 72  DLFAWNILLN-MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 97  P----EKNSVSWSAMISGYI--ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKV 148
                E N   ++ ++   +  +CG+L   +   +FK+    +    TA+I  Y   G+V
Sbjct: 131 HREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRV 190

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D+A ++FD +  K++V+W  M+  + EN   ++ LKL   M  +G +PN  + +SV   C
Sbjct: 191 DVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
             L +  +GK VH    KS    D      L+ +Y K GD++DA   F EI +KDV+ W+
Sbjct: 251 LGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWS 310

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
            MI+ YAQ  + ++A+ +F +M+   + P+  TF ++L AC     ++LG Q    ++  
Sbjct: 311 FMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK- 369

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
            G+ +       ++D+  + G++  ++ L  + P +     + T++
Sbjct: 370 IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 13/249 (5%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           E+ K      + AW  +++ Y+K   +  A KLFDEMP +N +++  +I GY E+    +
Sbjct: 63  EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLE 122

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            ++L   +   G   N    +++L     +   +LG  +H  +FK     +    T LI 
Sbjct: 123 AIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALID 182

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
            Y  CG ++ A ++F  I  KD+V+W  M++ +A++   ++AL+LF +M+  G KP++ T
Sbjct: 183 AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFT 242

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHY--TCMVDLLGRAGKLVEAV 355
           F ++  AC       LG++ FD   + +G A K     D Y    ++DL  ++G + +A 
Sbjct: 243 FASVFKAC-------LGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 356 DLIKKMPFK 364
              +++P K
Sbjct: 296 XAFEEIPKK 304



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 33/214 (15%)

Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
           N+ + ++ L  C        GK +H  + K   C D  A   L++MY K   L DA KLF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-----LACN- 310
            E+  ++ +++  +I GYA+  +  +A+ LF ++  EG + +   F  +L     + C  
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGE 156

Query: 311 -----HAGLVDLGIQ----YFDSMVNDYGIAAKPD---------------HYTCMVDLLG 346
                HA +  LG +       ++++ Y +  + D                +T MV    
Sbjct: 157 LGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA 216

Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
                 EA+ L  +M    FKP    F ++  AC
Sbjct: 217 ENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 277/445 (62%), Gaps = 6/445 (1%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           + V  TA+++ Y K G +D A ++F  +  K+LV+W A+++ Y       + L+L R M 
Sbjct: 45  NTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMT 104

Query: 191 --GL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKC 246
             GL G +P+ S  + +L  C+ LS+   G+  H+ + +      D      +I+MY KC
Sbjct: 105 LHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKC 164

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G+L  A ++F  +  +D V W  +ISGYA HG  E++L +F +M+ +G KPD ++ + +L
Sbjct: 165 GNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVL 224

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             C+HAGLV+ G  +F  +  ++G+     HY CM+DLLGR+G L  A  +I++MPF+  
Sbjct: 225 SVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQAT 284

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              +   L+AC+VH   +  + AA  +  L P  AA  YV L+NIYAA  +WD V R+R 
Sbjct: 285 AMNWAIFLAACKVHSDTERGKRAAEKVLELEPVPAA--YVSLSNIYAAAGEWDQVDRVRS 342

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           +MK   + K PG S IEV + VHEF +GD+ HP    I+  L+ L ++M+ +GYVPD + 
Sbjct: 343 AMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKL 402

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            L  V EE KE+LL FHSEKLAIAFGL+  P G+ +R+ KNLRVCGDCH A K++S I  
Sbjct: 403 VLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAG 462

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI +RD+ RFHHF+DG CSCGDYW
Sbjct: 463 REIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           M+ EG+ PD I FVA L AC  A L DL + +   S V + G+ +     T +V++ G+A
Sbjct: 1   MQQEGVLPDKICFVATLNACGGA-LADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKA 59

Query: 349 GKLVEAVDLIKKMPFK 364
           G L EA  + + +  K
Sbjct: 60  GCLDEATRVFRGLERK 75


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 286/477 (59%), Gaps = 7/477 (1%)

Query: 100 NSVSWSAMISGYIECGQLDKAVE-LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
           + V  ++++  Y   G LD+A   L+       VV+W  M+SGY K G +  A ++F  M
Sbjct: 112 HPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARM 171

Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
           P +NLV+W+AM+   V      + L +   M+    RP+   L SVL  C+HL +++ G+
Sbjct: 172 PERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGR 231

Query: 219 QVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
            VH+ +           L   T L+ MYCKCG +EDA ++F  + R+DVV WNAMI G A
Sbjct: 232 WVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLA 291

Query: 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335
            +G GE+AL LF +M  +G  P+  TF+A+L AC H G VD G + F SM  DYGI  + 
Sbjct: 292 MNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDYGIKPQR 350

Query: 336 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395
           +HY C+ DLLGRAG + EA  L+  MP +P  + +G L+S+C++H  +++ E     L  
Sbjct: 351 EHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIE 410

Query: 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 455
           L P +  G YV L N+YA   +W++   IR  M++    K  G S+IE+  +VHEF SGD
Sbjct: 411 LEPYDG-GRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGD 469

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
             HP    I+  L+++E+R++L GYV D  +  +    EE K   L +HSE+LA+AFG++
Sbjct: 470 TRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGIL 529

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +P G PIR+ KNLRVC DCH  +K +S + +REIIVRD  RFH F+DG CSC DYW
Sbjct: 530 NIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 13/253 (5%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DVVS+N M+S       D+ AA + F R+P ++  SW+ M+   V+     +A  +F  M
Sbjct: 144 DVVSWNTMVSG-YGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202

Query: 97  PEKN---------SVSWSAMISGYIECGQ-LDKAVELFKVAPVK-SVVAWTAMISGYMKF 145
             +          SV  +    G +E G+ + + +E       + +++  TA++  Y K 
Sbjct: 203 MREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKC 262

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A ++FD +  +++V WNAMI G   N + E  L+L R M+  G  PN S+  +VL
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVL 322

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDV 264
             C+H   +  GK+V + +    +         L  +  + G++E+A  L L++      
Sbjct: 323 CACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382

Query: 265 VTWNAMISGYAQH 277
             W A++S    H
Sbjct: 383 SQWGALMSSCQMH 395


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/456 (41%), Positives = 276/456 (60%), Gaps = 37/456 (8%)

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            K+F+ MP +++V+WN +I+G  +N   ED L ++R M    +RP++ +LSSVL   +  
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
            +L  GK++H    ++    D    + LI MY KC  ++D+C++F  + + D ++WN++I
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 272 SGYAQHGKGEKALRLFDKM------------------------------------KDEGM 295
           +G  Q+G  ++ L+ F +M                                    + EG+
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGV 369

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
           KP+ + F+A+L AC+HAGLVD   +YF+SM  DY I    +HY  + DLLGR G+L EA 
Sbjct: 370 KPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAY 429

Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
           + I  M  +P  +++ TLL+ACRVHK ++LAE  +  LF ++P N  G YV L+NIY+A 
Sbjct: 430 EFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNI-GAYVLLSNIYSAA 488

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
            +W D  ++R++M++  + K P  SWIE+   VH F +GD+ HP    I+E LK L ++M
Sbjct: 489 GRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQM 548

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           +  GYV D    LH V EE K  LL  HSE+LAI FG+I  P GT IRV KNLRVC DCH
Sbjct: 549 EREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCH 608

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            ATK+IS I  REI+VRD +RFHHFKDG CSCGD+W
Sbjct: 609 TATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 30/183 (16%)

Query: 154 LFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
           +F+ +P+    + W ++I  Y  +      L     M+  G  P+ +   SVL  C+ + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC------------------- 253
            L+ G+ VH  + +  +  D      L++MY K   LE+                     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 254 ----------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
                     K+F  + ++D+V+WN +ISG AQ+G  E AL +  +M +  ++PDS T  
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 304 ALL 306
           ++L
Sbjct: 241 SVL 243



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
           ++L   S + S    KQ+H  + ++ L    + L+ ++S+Y     L D+  +F  +   
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSP 68

Query: 263 -DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
              + W ++I  Y  HG    +L  F +M   G  PD   F ++L +C 
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117


>gi|302764608|ref|XP_002965725.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
 gi|300166539|gb|EFJ33145.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
          Length = 502

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/451 (43%), Positives = 280/451 (62%), Gaps = 11/451 (2%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMP---TKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           +++   A+++ Y K  K+  A KLF EM    ++ +V+W+AMI  Y  +   ++ L L  
Sbjct: 53  NLLVQNALVNFYAKCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFH 112

Query: 188 MMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYC 244
            M   G + PNA + + V   C  +  L+ G+++H L   S   K ++ +    L++M+ 
Sbjct: 113 RMRKDGRVEPNAMTFTGVFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFV 172

Query: 245 KCGDLEDACKLFLEIQRKDV----VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
           + G LE+A K+F  +   D     V+W AMI+  AQHG+G++AL LF +M  EGM  D+ 
Sbjct: 173 RFGSLEEARKVFDAMDHPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADAT 232

Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
           TF+ +L AC+HAGL+   +++F SMV DY IA    HY   +D +GRAG+L +A +LI  
Sbjct: 233 TFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHS 292

Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
           MPF P+   + TLL+ACR+H + + A   A  L  L P ++   Y  L N+YAA +++ D
Sbjct: 293 MPFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMA-YTLLGNVYAATERYGD 351

Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
             R+R SM +  + K+P  S+IEV   VHEF +GDR HP    I  +L++L  RM+ AGY
Sbjct: 352 QMRVRKSMTDRGLKKVPRKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGY 411

Query: 481 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 540
           VP+ +  LHAV EE KEQL+  HSEKLAIAFGLI  P GTP+ + KNLRVC DCH ATK 
Sbjct: 412 VPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKV 471

Query: 541 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I+ I +R I+VRDT RFHH +DG CSC DYW
Sbjct: 472 IAKIMRRRIVVRDTHRFHHLEDGQCSCKDYW 502



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G+ P+  ++S  L  CS L S + G ++H+   +     +      L++ Y KC  
Sbjct: 10  MQSHGLFPSDFTISVALSSCSSLKSFERGARIHRWADEHGYGSNLLVQNALVNFYAKCSK 69

Query: 249 LEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVA 304
           + +A KLF E+     + VV+W+AMI  YA HG+G++AL LF +M+ +G ++P+++TF  
Sbjct: 70  IPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVEPNAMTFTG 129

Query: 305 LLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +  AC     ++ G + +  +M +    ++ P     ++++  R G L EA  +   M
Sbjct: 130 VFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFVRFGSLEEARKVFDAM 187



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 59/272 (21%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T V+W++++  +A   G+ ++A  LF ++ +   V  N M    + N+  VV   +  +
Sbjct: 86  RTVVSWSAMIGAYALH-GRGQEALLLFHRMRKDGRVEPNAMTFTGVFNACGVVEDLEQGR 144

Query: 64  RLPIKDTASW----------NTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMIS 109
            +     AS           N +++ FV+  ++ +AR +F AM       NSVSW+AMI+
Sbjct: 145 EIHALAMASGELKSSSPILENALLNMFVRFGSLEEARKVFDAMDHPDAFSNSVSWTAMIA 204

Query: 110 GYIECGQLDKAVELFKVAPVKSVVA------------------------WTAMISGYM-- 143
              + GQ D+A+ELFK   ++ +VA                        + +M+  Y   
Sbjct: 205 ALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIA 264

Query: 144 --------------KFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                         + G++  AE+L   MP     VTW  ++     +S AE   K+  +
Sbjct: 265 PTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVAEL 324

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           +  L   P   S++  LLG  + ++ + G Q+
Sbjct: 325 LAKLA--PE-DSMAYTLLGNVYAATERYGDQM 353


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/445 (42%), Positives = 277/445 (62%), Gaps = 6/445 (1%)

Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
           + V  TA+++ Y K G +D A ++F  +  K+LV+W A+++ Y       + L+L R M 
Sbjct: 45  NTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMT 104

Query: 191 --GL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKC 246
             GL G +P+ S  + +L  C+ LS+   G+  H+ + +      D      +I+MY KC
Sbjct: 105 LHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKC 164

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G+L  A ++F  +  +D V W  +ISGYA HG  E++L +F +M+ +G KPD ++ + +L
Sbjct: 165 GNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVL 224

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
             C+HAGLV+ G  +F  +  ++G+     HY CM+DLLGR+G L  A  +I++MPF+  
Sbjct: 225 SVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQAT 284

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
              +   L+AC+VH   +  + AA  +  L P  AA  YV L+NIYAA  +WD V R+R 
Sbjct: 285 AMNWAIFLAACKVHSDTERGKRAAEKVLELEPVPAA--YVSLSNIYAAAGEWDQVDRVRS 342

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
           +MK   + K PG S IEV + VHEF +GD+ HP    I+  L+ L ++M+ +GYVPD + 
Sbjct: 343 AMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKL 402

Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
            L  V EE KE+LL FHSEKLAIAFGL+  P G+ +R+ KNLRVCGDCH A K++S I  
Sbjct: 403 VLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAG 462

Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
           REI +RD+ RFHHF+DG CSCGDYW
Sbjct: 463 REIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           M+ EG+ PD I FVA L AC  A L DL + +   S V + G+ +     T +V++ G+A
Sbjct: 1   MQQEGVLPDKICFVATLNACGGA-LADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKA 59

Query: 349 GKLVEAVDLIKKMPFK 364
           G L EA  + + +  K
Sbjct: 60  GCLDEATRVFRGLGRK 75


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 312/537 (58%), Gaps = 41/537 (7%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL---------- 123
           N++I  + +  ++ +AR +F  M  K+ VSW+++I+GY +    ++A+ L          
Sbjct: 90  NSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFK 149

Query: 124 ---FKVAPV--------------------------KSVVAWTAMISGYMKFGKVDLAEKL 154
              F  A +                          + V   +A++  Y + G +D+A  +
Sbjct: 150 PNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAV 209

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
           FD++ +KN V+WNA+I+G+      E  L     M+  G      + SSV    + L +L
Sbjct: 210 FDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
           + GK VH  + KS       A   L+ MY K G + DA K+F  +  KD+VTWN M++ +
Sbjct: 270 EQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAF 329

Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
           AQ+G G++A+  F++M+  G+  + +TF+ +L AC+H GLV  G +YF+ M+ +Y +  +
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPE 388

Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394
            DH+  +V LLGRAG L  A+  I KMP +P  A++G LL+ACR+HK   + +FAA ++F
Sbjct: 389 IDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVF 448

Query: 395 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 454
            L+P ++ G  V L NIYA+  +WD  AR+R  MK   V K P  SW+E+   VH F + 
Sbjct: 449 ELDPDDS-GPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVAN 507

Query: 455 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 514
           D  HP    I++   ++ K+++  GYVPD+++ L  V ++ +E  L +HSEKLA+AF LI
Sbjct: 508 DDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALI 567

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           ++P G  IR+ KN+R+CGDCH A KYIS +  REI+VRDT RFHHF +G+CSC DYW
Sbjct: 568 EMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 13/188 (6%)

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L+ L ++    + P      + +  C+   +L+  ++VH  +  S    D      LI +
Sbjct: 36  LRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHL 95

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           YCKCG + +A K+F E++RKD+V+W ++I+GYAQ+   E+A+ L   M     KP+  TF
Sbjct: 96  YCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTF 155

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVD 356
            +LL A        +G Q        + +A K D +      + ++D+  R G +  A  
Sbjct: 156 ASLLKAAGAHADSGIGRQI-------HALAVKCDWHEDVYVGSALLDMYARCGMMDMATA 208

Query: 357 LIKKMPFK 364
           +  K+  K
Sbjct: 209 VFDKLDSK 216



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 102/266 (38%), Gaps = 41/266 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A  +FDK+   + VS                                WN +ISGF
Sbjct: 201 GMMDMATAVFDKLDSKNGVS--------------------------------WNALISGF 228

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSV 132
            +K +   A   F  M     E    ++S++ S     G L++       + K     + 
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
            A   ++  Y K G +  A K+FD +  K+LVTWN M+  + +    ++ +     M   
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           GI  N  +   +L  CSH   ++ GK+  +++ +  L  +      ++++  + G L  A
Sbjct: 349 GIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFA 408

Query: 253 CKLFLEIQ-RKDVVTWNAMISGYAQH 277
                ++        W A+++    H
Sbjct: 409 LVFIFKMPIEPTAAVWGALLAACRMH 434



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 119/307 (38%), Gaps = 39/307 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++ K  V+WN++++GFA+ +G  + A   F ++ +    + +   S +          F 
Sbjct: 213 LDSKNGVSWNALISGFAR-KGDGETALMTFAEMLRNGFEATHFTYSSV----------FS 261

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              RL   +   W           +M K+R    A       + + ++  Y + G +  A
Sbjct: 262 SIARLGALEQGKW--------VHAHMIKSRQKMTAF------AGNTLLDMYAKSGSMIDA 307

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVEN 176
            ++F     K +V W  M++ + ++G    A   F+EM       N VT+  ++      
Sbjct: 308 RKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHG 367

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
              ++G +   MM    + P      +V  LLG + L +  L       +FK P+     
Sbjct: 368 GLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFAL-----VFIFKMPIEPTAA 422

Query: 235 ---ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
              AL     M+      + A     E+   D      + + YA  G+ + A R+   MK
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMK 482

Query: 292 DEGMKPD 298
             G+K +
Sbjct: 483 TTGVKKE 489


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 301/515 (58%), Gaps = 21/515 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS------GYIECGQLDKAVEL 123
           NT I    Q     KA  L + M  +    N  + S+++         +EC QL      
Sbjct: 120 NTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFS-- 177

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
            K A   +    TA++  Y K   +  A ++F+ MP KN VTW++M+AGYV+N + ++ L
Sbjct: 178 IKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEAL 237

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            L      +G   +  ++SS +  C+ L++L  GKQVH +  KS    +    + LI MY
Sbjct: 238 LLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMY 297

Query: 244 CKCGDLEDACKLFLE-IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
            KCG + +A  +F   ++ + +V WNAMISG+A+H   ++A+ LF+KM+  G  PD +T+
Sbjct: 298 AKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTY 357

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           V++L AC+H GL + G +YFD MV  + ++    HY+CM+D+LGRAG + +A DLI +M 
Sbjct: 358 VSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMS 417

Query: 363 FKPQPAIFGT-------LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
           F    +++G+       + ++CR++  ++ AE AA +LF + P NA G ++ LANIYAA 
Sbjct: 418 FNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNA-GNHILLANIYAAN 476

Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
           KK D+VAR R  ++E +V K  G SWIE+   +H F  G+R HP++   + KL  L   +
Sbjct: 477 KKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAKLDNLVVEL 536

Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
           K   Y  D    LH V E  K  LL  HSEKLAI FGL+ +P   PIR+ KNLR+CGDCH
Sbjct: 537 KKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKNLRICGDCH 596

Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 570
              K +S    REIIVRDT RFHHFKDG CSCG++
Sbjct: 597 TFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
           ++ ++     ++  T +I+ Y K   V    K  DEM  K+L+  N  I    +N+    
Sbjct: 75  QIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQNAEDRK 134

Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
            LKLL  M       N  ++SSVL  C+   ++    Q+H    K+ +  +    T L+ 
Sbjct: 135 ALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLH 194

Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           +Y KC  ++DA ++F  +  K+ VTW++M++GY Q+G  ++AL LF   +  G   D   
Sbjct: 195 VYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFN 254

Query: 302 FVALLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
             + + AC  AGL  L  G Q   +M +  G  +     + ++D+  + G + EA
Sbjct: 255 ISSAVSAC--AGLATLVEGKQ-VHAMSHKSGFGSNIYVASSLIDMYAKCGCIREA 306



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 91/181 (50%), Gaps = 15/181 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIE 113
           A   F+ +P K+  +W++M++G+VQ     +A  LF    L   +++  + S+ +S    
Sbjct: 205 ASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSA--- 261

Query: 114 CGQLDKAVELFKVAPV-------KSVVAWTAMISGYMKFGKVDLAEKLFDE-MPTKNLVT 165
           C  L   VE  +V  +        ++   +++I  Y K G +  A  +F+  +  +++V 
Sbjct: 262 CAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVL 321

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WNAMI+G+  ++ A++ + L   M   G  P+  +  SVL  CSH+   + G++   L+ 
Sbjct: 322 WNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMV 381

Query: 226 K 226
           +
Sbjct: 382 R 382



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%)

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
           S+L  +L  C+   S   G+  H  + +  L  D    T LI+MY KC  +    K   E
Sbjct: 51  SNLHYLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDE 110

Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
           +  K ++  N  I    Q+ +  KAL+L  +M+ E    +  T  ++L  C
Sbjct: 111 MLVKSLILXNTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNC 161


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 271/467 (58%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S  +S Y   G +  A   F       VV  TAM+      G+ D A +LFD MP ++ V
Sbjct: 241 SGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHV 300

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WNAMIAGYV    + + L+L   M   G      +L S L  C+ L +L+ GK VH   
Sbjct: 301 AWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCA 360

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
               +    T  T LI MY KCG +  A ++F  +  ++V TW + +SG A +G G   L
Sbjct: 361 HSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCL 420

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF +M+  G++P+ +TFV +L  C+ AGLVD G   FDSM +++GI    +HY CMVDL
Sbjct: 421 ALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDL 480

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG+L +AV+ I  MP +P   ++G LL+A R+HK ++L ++A   L  +   N A  
Sbjct: 481 YGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA-A 539

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           +V L+NIYA  + W  V+ +R  MK   V K+PG S IEVG  VHEF  G + HP    I
Sbjct: 540 HVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEI 599

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
              L E+ +R++L GY+ + +  L  + EE KE  +  HSEKLAIAFGL+ +P    IR+
Sbjct: 600 EMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRI 659

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH  TK IS +  REI++RD  RFHHFKDG CSC DYW
Sbjct: 660 VKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 117/273 (42%), Gaps = 25/273 (9%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
            PDVV    M+   L    +  AA + F  +P +D  +WN MI+G+V      +A  LF 
Sbjct: 265 SPDVVCVTAMVGA-LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFD 323

Query: 95  AMPEKN-SVSWSAMISGYIECGQ---LDKAVELFKVAPVK----SVVAWTAMISGYMKFG 146
            M     +V    ++S    C Q   L++   +   A  +    SV   TA+I  Y K G
Sbjct: 324 EMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 383

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            V  A ++FD M  +N+ TW + ++G   N    D L L + M   G+ PN  +   VL 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLF--L 257
           GCS    +  G+      F S   K    + P       ++ +Y + G L+DA      +
Sbjct: 444 GCSMAGLVDEGRA----CFDS--MKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGM 497

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++  + V W A+++    H   E      DK+
Sbjct: 498 PLEPHEGV-WGALLNASRIHKNVELGKYAMDKL 529



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 32/174 (18%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDL----------------------------- 249
            VH    +     D    +  +SMY   GD+                             
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 250 --EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
             + A +LF  + ++D V WNAMI+GY   G+  +ALRLFD+M+  G     +T V+ L 
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           AC   G ++ G ++  S  +  G+       T ++D+  + G +  A+++   M
Sbjct: 343 ACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSM 395


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 321/559 (57%), Gaps = 24/559 (4%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L   A   G +   +++F  +P PD   +  ++       +  V +  F+ R+ + + A 
Sbjct: 50  LLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAP 109

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
            N   +  ++        DL +A+     +    +++G+                    V
Sbjct: 110 SNYTFTSVIKS-----CADL-VALRHGRIIHGHVLVNGF-----------------GSDV 146

Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
              TA++S Y K G +  A K+FD+M  +++VTWN+MI+GY +N +A++ ++L   M  +
Sbjct: 147 YVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEI 206

Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           G+ PN+++  SVL  C+HL +  LG  VH+    + L  +    T LI+MY +CG++  A
Sbjct: 207 GVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKA 266

Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            ++F  ++ ++VV W AMISGY  +G G +A+ LF +M+  G+ P+SITFVA+L AC HA
Sbjct: 267 REVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHA 326

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLV+ G + F+SM  +Y +  + +H+ C+VD+LGRAG L EA + IK++  +P PAI+  
Sbjct: 327 GLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTA 386

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           +L AC++HK   L    A +     P N A  YV L+NIYA   + D V  +R +M    
Sbjct: 387 MLGACKMHKNFGLGAQVAEHRLASEPGNPAH-YVILSNIYALAGRMDQVEMVRDNMIRKC 445

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K  GYS I++    + F  GD+ H E   I+  L +L ++ + AGYV   +  +H + 
Sbjct: 446 LKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELE 505

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE +E  L +HSEKLAIAFGL+K   GT IR+ KNLR+C DCH A KYIS I  REIIVR
Sbjct: 506 EEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVR 565

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHFK+G+CSC DYW
Sbjct: 566 DKLRFHHFKNGSCSCLDYW 584



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 54/283 (19%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK 68
           + L  F  + G L +A+++FDK+    VV++N M+S    N  + + +  FD  + + ++
Sbjct: 150 TALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVE 209

Query: 69  -DTASWNTMISG-----------FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            ++A++ +++S            +V +  +    DL       N V  +++I+ Y  CG 
Sbjct: 210 PNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDL-------NVVLGTSLINMYTRCGN 262

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
           + KA E+F     ++VVAWTAMISGY   G    A +LF EM                  
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRN--------------- 307

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTA 235
                           G+ PN+ +  +VL  C+H   +  G++V + + +   L  +   
Sbjct: 308 ----------------GLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEH 351

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWNAMISGYAQH 277
              L+ M  + G L++A     EI  +     W AM+     H
Sbjct: 352 HVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMH 394



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 95/170 (55%), Gaps = 14/170 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNSDDV 55
           M  ++ V WNS+++G+ +Q G  K+A  LFD++     +P+  ++ +++ +C  L +  +
Sbjct: 172 MRDRSVVTWNSMISGY-EQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFIL 230

Query: 56  ---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V  +     L + +     ++I+ + +  N++KAR++F +M E+N V+W+AMISGY 
Sbjct: 231 GCWVHEYAVGNGLDL-NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYG 289

Query: 113 ECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158
             G   +AVELF    +   + + + + A++S     G V+   ++F+ M
Sbjct: 290 TNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESM 339



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 114/294 (38%), Gaps = 68/294 (23%)

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L+L  QVH  V  S        LT L+++ C  G +    ++FL +   D   + ++I  
Sbjct: 25  LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS 84

Query: 274 YAQ-HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL---GIQYFDSMVNDY 329
            ++ H     +L  + +M    + P + TF +++ +C  A LV L    I +   +VN +
Sbjct: 85  TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSC--ADLVALRHGRIIHGHVLVNGF 142

Query: 330 GIAAKPDHY--TCMVDLLGRAGKLVEA--------------------------------- 354
           G     D Y  T ++   G+ G L  A                                 
Sbjct: 143 G----SDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIR 198

Query: 355 -VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA----EFAAMNLFNLN---PANAAGCYV 406
             D +K++  +P  A F ++LSAC       L     E+A  N  +LN     +    Y 
Sbjct: 199 LFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYT 258

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIEVGT----VVHEFR 452
           +  N+  A + +D       SMKE NVV     + GY     G+    + HE R
Sbjct: 259 RCGNVSKAREVFD-------SMKERNVVAWTAMISGYGTNGYGSQAVELFHEMR 305


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 303/518 (58%), Gaps = 37/518 (7%)

Query: 58  AFDFFQRLP--IKDTAS--WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           AF  F+  P  IK  +   WN +++G+ + K+M  A  LF +MPE+NS SWS +I GY++
Sbjct: 180 AFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVD 239

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
            G+L++A +LF++ P K+VV+WT +I+G+ + G  + A                  I+ Y
Sbjct: 240 NGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETA------------------ISTY 281

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
            E             M+  G++PN  ++++VL  CS   +L  G ++H  +  + +  D 
Sbjct: 282 FE-------------MLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDR 328

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              T L+ MY KCG+++ A  +F  +  KD+++W AMI G+A HG+  +A++ F +M   
Sbjct: 329 AIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYS 388

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
           G KPD + F+A+L AC ++G VDLG+ +FDSM  DY I     HY  +VDLLGRAGKL E
Sbjct: 389 GEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDE 448

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A +L++ MP  P    +  L  AC+ HK  +  +    NL  L+P    G Y+ L   +A
Sbjct: 449 AHELVEYMPINPDLTTWAALYRACKAHKS-NRTDIVLQNLLELDP-ELRGSYIFLDKTHA 506

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  K+ DV + RLS+++    +  G S+IE+   +++F + D  H +   I  KL+ +  
Sbjct: 507 AKGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRLKLEGIIS 566

Query: 474 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 533
                GY+P  ++++H + EE KE +   HSEKLA+  GL++   GT IR+ KNLR+CGD
Sbjct: 567 LAIERGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIKNLRICGD 626

Query: 534 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           CH   KY+S I +R I++RD  +FHHFKDG+CSCGDYW
Sbjct: 627 CHSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 146/319 (45%), Gaps = 61/319 (19%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFDFFQRLP 66
           S++  +AK  G+L  A ++F++ P   +   +I+L  +L+N    + D+  A   F+ +P
Sbjct: 166 SLVDMYAKT-GQLNHAFQVFEETPD-RIKKESILLWNVLVNGYCRAKDMQMATTLFRSMP 223

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL--- 123
            +++ SW+T+I G+V    + +A+ LF  MPEKN VSW+ +I+G+ + G  + A+     
Sbjct: 224 ERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFE 283

Query: 124 ----------FKVAPVKSVVA--------------------------WTAMISGYMKFGK 147
                     + VA V S  +                           T+++  Y K G+
Sbjct: 284 MLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGE 343

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
           VD A  +F  M  K++++W AMI G+  +      ++  R M+  G +P+     +VL  
Sbjct: 344 VDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTA 403

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLEDACKL--FLE 258
           C +   + LG     L F   +  D  A+ P +  Y        + G L++A +L  ++ 
Sbjct: 404 CLNSGEVDLG-----LNFFDSMRLD-YAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMP 457

Query: 259 IQRKDVVTWNAMISGYAQH 277
           I   D+ TW A+      H
Sbjct: 458 IN-PDLTTWAALYRACKAH 475



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 16/236 (6%)

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
           D +  +F     +N   +NA+I G  EN+  E  ++   +M+ LG++P+  +   VL   
Sbjct: 77  DYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSN 136

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE----IQRKDV 264
           S L    LG+ +H    K+ +  D+     L+ MY K G L  A ++F E    I+++ +
Sbjct: 137 SKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESI 196

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
           + WN +++GY +    + A  LF  M +     +S ++  L+      G ++   Q F+ 
Sbjct: 197 LLWNVLVNGYCRAKDMQMATTLFRSMPER----NSGSWSTLIKGYVDNGELNRAKQLFEL 252

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 377
           M     ++     +T +++   + G    A+    +M     KP       +LSAC
Sbjct: 253 MPEKNVVS-----WTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSAC 303


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 294/512 (57%), Gaps = 11/512 (2%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           K T  +N ++SG+V     + A  LF  M E+    NSV+   +I   +    L+    L
Sbjct: 106 KLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL 165

Query: 124 ----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
                K      V      I+ YMK G V+ A+KLFDEMP K L++WNAM++GY +N  A
Sbjct: 166 HCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLA 225

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
            + L+L R M   G+ P+  +L  VL  C++L +  +G +V   +  S    +      L
Sbjct: 226 TNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNAL 285

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I+MY +CG+L  A  +F  +  + +V+W A+I GY  HG GE A++LF +M   G++PD 
Sbjct: 286 INMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 345

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
             FV +L AC+HAGL D G++YF  M  +Y +   P+HY+CMVDLLGRAG+L EA  LI+
Sbjct: 346 TAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIE 405

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
            MP KP  A++G LL AC++HK ++LAE A   +  L P N  G YV L+NIY+      
Sbjct: 406 SMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPEN-IGYYVLLSNIYSNANNSK 464

Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
            V RIR+ MKE  + K PG S++E+   VH F  GDR H +   I+  L+ELE  +    
Sbjct: 465 GVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEF 524

Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
             P+ +    +  +      +  HSEKLA+AFGL+    G  + + KNLR+C DCH   K
Sbjct: 525 GKPEKDNREESNKDGFTR--VGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFK 582

Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +S I  R++ VRD TRFHHF++G+CSC DYW
Sbjct: 583 MVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAV---- 121
           +  WNT +    ++    +A  L+  M       N+ ++   +     C  L   +    
Sbjct: 5   STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALK---SCAALSLPILGSQ 61

Query: 122 ---ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE--MPTKNLVTWNAMIAGYVEN 176
              ++ KV  V      T +IS Y K   VD A K+F+E     K  V +NA+++GYV N
Sbjct: 62  FHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSN 121

Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
           S   D + L R M   G+  N+ +L  ++  C    +L+LG  +H    K     D + +
Sbjct: 122 SKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVV 181

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
              I+MY KCG +  A KLF E+  K +++WNAM+SGYAQ+G     L L+  M   G+ 
Sbjct: 182 NCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVH 241

Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
           PD +T V +L +C + G   +G +  +  +   G  + P     ++++  R G L +A  
Sbjct: 242 PDPVTLVGVLSSCANLGAQSVGHE-VEFKMQASGFTSNPFLNNALINMYARCGNLTKAQA 300

Query: 357 LIKKMP 362
           +   MP
Sbjct: 301 VFDGMP 306



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 3/201 (1%)

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           WN  +    +       L L   M+  G RPNA +    L  C+ LS   LG Q H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKA 283
           K     +    T LISMYCK   +++A K+F E    RK  V +NA++SGY  + K   A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + LF +M +EG+  +S+T + L+ AC     ++LG     S +  YG  +      C + 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL-KYGFDSDVSVVNCFIT 186

Query: 344 LLGRAGKLVEAVDLIKKMPFK 364
           +  + G +  A  L  +MP K
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVK 207



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 127/280 (45%), Gaps = 13/280 (4%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DV   N  ++ + +    V  A   F  +P+K   SWN M+SG+ Q        +L+  M
Sbjct: 177 DVSVVNCFIT-MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM 235

Query: 97  P----EKNSVSWSAMISGYIECGQLDKAVEL-FKVAP---VKSVVAWTAMISGYMKFGKV 148
                  + V+   ++S     G      E+ FK+       +     A+I+ Y + G +
Sbjct: 236 DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNL 295

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A+ +FD MP + LV+W A+I GY  +   E  ++L + MI  GI P+ ++   VL  C
Sbjct: 296 TKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSAC 355

Query: 209 SHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVT 266
           SH      G +  +++ ++  L       + ++ +  + G L++A  L   +  K D   
Sbjct: 356 SHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAV 415

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           W A++     H   E A   F+++ +  ++P++I +  LL
Sbjct: 416 WGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLL 453



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 16/136 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNSDDV 55
           M VK  ++WN++++G+A Q G   +  EL+  +      PD V+   ++ SC  L +  V
Sbjct: 204 MPVKGLISWNAMVSGYA-QNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 56  VAAFDF------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
               +F      F   P  +    N +I+ + +  N+ KA+ +F  MPE+  VSW+A+I 
Sbjct: 263 GHEVEFKMQASGFTSNPFLN----NALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIG 318

Query: 110 GYIECGQLDKAVELFK 125
           GY   G  + AV+LFK
Sbjct: 319 GYGMHGHGEIAVQLFK 334


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 271/467 (58%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S  +S Y   G +  A   F       VV  TAM+      G+ D A +LFD MP ++ V
Sbjct: 241 SGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHV 300

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WNAMIAGYV    + + L+L   M   G      +L S L  C+ L +L+ GK VH   
Sbjct: 301 AWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCA 360

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
               +    T  T LI MY KCG +  A ++F  +  ++V TW + +SG A +G G   L
Sbjct: 361 HSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCL 420

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF +M+  G++P+ +TFV +L  C+ AGLVD G   FDSM +++GI    +HY CMVDL
Sbjct: 421 ALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDL 480

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG+L +AV+ I  MP +P   ++G LL+A R+HK ++L ++A   L  +   N A  
Sbjct: 481 YGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA-A 539

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           +V L+NIYA  + W  V+ +R  MK   V K+PG S IEVG  VHEF  G + HP    I
Sbjct: 540 HVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEI 599

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
              L E+ +R++L GY+ + +  L  + EE KE  +  HSEKLAIAFGL+ +P    IR+
Sbjct: 600 EMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRI 659

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH  TK IS +  REI++RD  RFHHFKDG CSC DYW
Sbjct: 660 VKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 117/273 (42%), Gaps = 25/273 (9%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
            PDVV    M+   L    +  AA + F  +P +D  +WN MI+G+V      +A  LF 
Sbjct: 265 SPDVVCVTAMVGA-LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFD 323

Query: 95  AMPEKN-SVSWSAMISGYIECGQ---LDKAVELFKVAPVK----SVVAWTAMISGYMKFG 146
            M     +V    ++S    C Q   L++   +   A  +    SV   TA+I  Y K G
Sbjct: 324 EMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 383

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            V  A ++FD M  +N+ TW + ++G   N    D L L + M   G+ PN  +   VL 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLF--L 257
           GCS    +  G+      F S   K    + P       ++ +Y + G L+DA      +
Sbjct: 444 GCSMAGLVDEGRA----CFDS--MKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGM 497

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++  + V W A+++    H   E      DK+
Sbjct: 498 PLEPHEGV-WGALLNASRIHKNVELGKYAMDKL 529



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 32/174 (18%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDL----------------------------- 249
            VH    +     D    +  +SMY   GD+                             
Sbjct: 223 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 282

Query: 250 --EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
             + A +LF  + ++D V WNAMI+GY   G+  +ALRLFD+M+  G     +T V+ L 
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           AC   G ++ G ++  S  +  G+       T ++D+  + G +  A+++   M
Sbjct: 343 ACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSM 395


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 271/467 (58%), Gaps = 1/467 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S  +S Y   G +  A   F       VV  TAM+      G+ D A +LFD MP ++ V
Sbjct: 234 SGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHV 293

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            WNAMIAGYV    + + L+L   M   G      +L S L  C+ L +L+ GK VH   
Sbjct: 294 AWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCA 353

Query: 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 284
               +    T  T LI MY KCG +  A ++F  +  ++V TW + +SG A +G G   L
Sbjct: 354 HSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCL 413

Query: 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
            LF +M+  G++P+ +TFV +L  C+ AGLVD G   FDSM +++GI    +HY CMVDL
Sbjct: 414 ALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDL 473

Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
            GRAG+L +AV+ I  MP +P   ++G LL+A R+HK ++L ++A   L  +   N A  
Sbjct: 474 YGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDA-A 532

Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
           +V L+NIYA  + W  V+ +R  MK   V K+PG S IEVG  VHEF  G + HP    I
Sbjct: 533 HVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEI 592

Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
              L E+ +R++L GY+ + +  L  + EE KE  +  HSEKLAIAFGL+ +P    IR+
Sbjct: 593 EMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRI 652

Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            KNLRVC DCH  TK IS +  REI++RD  RFHHFKDG CSC DYW
Sbjct: 653 VKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 117/273 (42%), Gaps = 25/273 (9%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
            PDVV    M+   L    +  AA + F  +P +D  +WN MI+G+V      +A  LF 
Sbjct: 258 SPDVVCVTAMVGA-LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFD 316

Query: 95  AMPEKN-SVSWSAMISGYIECGQ---LDKAVELFKVAPVK----SVVAWTAMISGYMKFG 146
            M     +V    ++S    C Q   L++   +   A  +    SV   TA+I  Y K G
Sbjct: 317 EMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 376

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            V  A ++FD M  +N+ TW + ++G   N    D L L + M   G+ PN  +   VL 
Sbjct: 377 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 436

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLF--L 257
           GCS    +  G+      F S   K    + P       ++ +Y + G L+DA      +
Sbjct: 437 GCSMAGLVDEGRA----CFDS--MKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGM 490

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
            ++  + V W A+++    H   E      DK+
Sbjct: 491 PLEPHEGV-WGALLNASRIHKNVELGKYAMDKL 522



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 32/174 (18%)

Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDL----------------------------- 249
            VH    +     D    +  +SMY   GD+                             
Sbjct: 216 SVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGG 275

Query: 250 --EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
             + A +LF  + ++D V WNAMI+GY   G+  +ALRLFD+M+  G     +T V+ L 
Sbjct: 276 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 335

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           AC   G ++ G ++  S  +  G+       T ++D+  + G +  A+++   M
Sbjct: 336 ACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSM 388


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 324/558 (58%), Gaps = 15/558 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           AQ + +   Q   + + ++ SC   ++ D   A   FQ     +   +  +I GFV   N
Sbjct: 60  AQLIRNGHSQDPFMVFELLRSCSKCHAIDY--ASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ---LDKAVEL----FKVAPVKSVVAWTA 137
             +A  L+  M  ++ +  + +++  ++ CG    L +  E+     K+    + +    
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 138 MISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           ++  Y K G++  A ++F+EMP     K+ V W AMI G+V N      L+  R M G  
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +RPN  ++  VL  CS L +L++G+ VH  + K  +  +      LI+MY +CG +++A 
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 297

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F E++ +DV+T+N MISG + +GK  +A+ LF  M    ++P ++TFV +L AC+H G
Sbjct: 298 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGG 357

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G + F SM  DY +  + +HY CMVDLLGR G+L EA DLI+ M   P   + GTL
Sbjct: 358 LVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 417

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LSAC++HK L+L E  A  L +   A+ +G YV L+++YA+  KW + A++R  MKE  +
Sbjct: 418 LSACKMHKNLELGEQVAKELEDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 476

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG S IEV   +HEF  GD  HP+   I+EKL+EL + ++L GY P+ E  L  + +
Sbjct: 477 QKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIED 536

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
             KE  L  HSE+LAI +GLI     T IRV KNLRVC DCH A K I+ I +R+I+VRD
Sbjct: 537 GEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRD 596

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFH+F++G CSCGDYW
Sbjct: 597 RNRFHYFENGACSCGDYW 614



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 73/350 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L DA+ +F+++P+                  DVVA          KDT  W  MI GF
Sbjct: 186 GELGDARRVFEEMPE------------------DVVA----------KDTVCWTAMIDGF 217

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVE--------LFKVAPVKS 131
           V+ +   +A + F  M  +N       I   +  C QL  A+E        + K     +
Sbjct: 218 VRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG-ALEIGRWVHSYMRKFEIELN 276

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           +    A+I+ Y + G +D A+ +FDEM  ++++T+N MI+G   N  +   ++L R+M+G
Sbjct: 277 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVG 336

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +RP   +   VL  CSH   +  G +    +F S + +D   + P I  Y        
Sbjct: 337 RRLRPTNVTFVGVLNACSHGGLVDFGFE----IFHS-MARDYR-VEPQIEHY-------- 382

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
                             M+    + G+ E+A  L   MK   M PD I    LL AC  
Sbjct: 383 ----------------GCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKM 423

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              ++LG Q    +  D G  A    Y  +  +   +GK  EA  +  KM
Sbjct: 424 HKNLELGEQVAKEL-EDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKM 471



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
           +H  + ++   +D   +  L+    KC  ++ A ++F      +V  + A+I G+   G 
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
             +A++L+ +M  E + PD+    ++L AC     +  G +   S     G ++      
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE-VHSRALKLGFSSNRLVRL 176

Query: 340 CMVDLLGRAGKLVEAVDLIKKMP 362
            +++L G+ G+L +A  + ++MP
Sbjct: 177 RIMELYGKCGELGDARRVFEEMP 199


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 275/436 (63%), Gaps = 3/436 (0%)

Query: 138 MISGYMKFGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +I  Y  FG   L  A  +FD MP ++ VTW+AMI GYV    + D ++L R M   G++
Sbjct: 168 LIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQ 227

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  ++  VL   + L +L+L + V + V +  + K  T    LI    KCGD++ A  +
Sbjct: 228 ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +Q++ VV+W ++I   A  G+G++A+R+F++MK  G+ PD + F+ +L AC+HAG+V
Sbjct: 288 FEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMV 347

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           D G  YFD+M  +YGI  K +HY CMVD+ GRAG +  A++ ++ MP +P P I+ +L+S
Sbjct: 348 DEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVS 407

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR H RL+L E    +L +  PA+ A  Y+ L+N++A  ++W + + IR  M +  + K
Sbjct: 408 ACRAHGRLELGESITRSLLHEYPAHEAN-YIMLSNVFALTQRWKEKSEIRREMSKRGIKK 466

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
           +PG S +E+   VHEF +GD  HP+   I+  ++E+ + ++  G++      L  + EE 
Sbjct: 467 VPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEED 526

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE  L +HSEKLAIAF L++ P GT +RV KNLRVC DCH A K IS + +REI+VRD +
Sbjct: 527 KEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRS 586

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH FKDG+CSC D+W
Sbjct: 587 RFHRFKDGSCSCKDFW 602



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 72/283 (25%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV---------------- 129
           +  AR++F  MP++++V+WSAMI GY+  G    AVELF+                    
Sbjct: 180 LGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAA 239

Query: 130 -----------------------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                                  KSV    A+I    K G VD A  +F+ M  +++V+W
Sbjct: 240 ATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSW 299

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
            ++I         ++ +++   M   G+ P+  +   VL  CSH   +  G         
Sbjct: 300 TSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG--------- 350

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
                              CG   DA K+   I+ K +  +  M+  + + G  E+A+  
Sbjct: 351 -------------------CGYF-DAMKVEYGIEPK-IEHYGCMVDMFGRAGMVERAMEF 389

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
              M    ++P+ + + +L+ AC   G ++LG     S++++Y
Sbjct: 390 VRTMP---IQPNPVIWRSLVSACRAHGRLELGESITRSLLHEY 429



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 4/177 (2%)

Query: 188 MMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           +M+   + PN  +   +L  C+ L  S  +G Q H    K     D      LI MY   
Sbjct: 116 LMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCF 175

Query: 247 GD--LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           G   L DA  +F  + ++  VTW+AMI GY + G    A+ LF +M+  G++ D +T + 
Sbjct: 176 GGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIG 235

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +L A    G ++L  ++    V   GI         ++D L + G +  AV + + M
Sbjct: 236 VLAAATDLGALELA-RWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/483 (38%), Positives = 284/483 (58%), Gaps = 17/483 (3%)

Query: 105 SAMISGYIECGQLDKAVELF----------------KVAPVKSVVAWTAMISGYMKFGKV 148
           S ++  Y+ C  ++ A  LF                K     +VV W  MI G ++ G +
Sbjct: 161 SNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A+ LFDEMP +++V+WN MI+GY +N    + + L + M    I PN  +L SVL   
Sbjct: 221 KSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + + +L+LGK +H    K+ +  D    + L+ MY KCG +++A ++F  + +++ +TW+
Sbjct: 281 ARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWS 340

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           A+I  +A HG+ E A+  F  M   G+ P+ + ++ +L AC+HAGLV+ G  +F  MV  
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
            G+  + +HY CMVDLLGRAG L EA +LI+ MP +P   I+  LL AC++HK L + E 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
            A  L  L P + +G YV L+N+YA++  W+ VAR+RL MK  ++ K PG SWIE+  ++
Sbjct: 461 VAETLMELAPHD-SGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGII 519

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEF   D  H +   I   L E+  +++  GY P+         E+ + + L +HSEK+A
Sbjct: 520 HEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIA 579

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGLI      P+++ KNLR+C DCH + K IS I KR+IIVRD  RFH F+ G+CSC 
Sbjct: 580 VAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCM 639

Query: 569 DYW 571
           DYW
Sbjct: 640 DYW 642



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 55/308 (17%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENS---WAEDGLKLLRMMIGLG-IRPNASSLSS 203
           +D A  +F +MP  N   WN ++    E +      + L L   M+  G ++PN  +  S
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA----CK----- 254
           VL  C+  S L+ GKQ+H L+ K    +D   ++ L+ MY  C  +EDA    CK     
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 255 --------------------------------------LFLEIQRKDVVTWNAMISGYAQ 276
                                                 LF E+ ++ VV+WN MISGYAQ
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           +G   +A+ LF +M+   + P+ +T V++L A    G ++LG ++         I     
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEIDDV 306

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLF 394
             + +VD+  + G + EA+ + + +P K     +  ++ A  +H R +  +  F  M   
Sbjct: 307 LGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKA 365

Query: 395 NLNPANAA 402
            + P + A
Sbjct: 366 GVTPNDVA 373



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 62/284 (21%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------- 125
           WN MI G V+  ++  A++LF  MP+++ VSW+ MISGY + G   +A+ LF+       
Sbjct: 207 WNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNI 266

Query: 126 ---------VAPVKSVVA------W-----------------TAMISGYMKFGKVDLAEK 153
                    V P  + +       W                 +A++  Y K G +D A +
Sbjct: 267 DPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQ 326

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F+ +P +N +TW+A+I  +  +  AED +    +M   G+ PN  +   +L  CSH   
Sbjct: 327 VFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGL 386

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLF--LEIQRKDV 264
           ++ G+      F S + K    L P I  Y C      + G LE+A +L   + I+  DV
Sbjct: 387 VEEGRS-----FFSHMVK-VVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDV 440

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMK---PDSITFVAL 305
           + W A++     H    K L++ +++ +  M+    DS ++VAL
Sbjct: 441 I-WKALLGACKMH----KNLKMGERVAETLMELAPHDSGSYVAL 479


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 301/528 (57%), Gaps = 15/528 (2%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYI 112
           AA   F   P ++  SW  M++ F    +   A +L   M       NS+++  ++    
Sbjct: 110 AAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVA 169

Query: 113 ECGQLDKAVELFK----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
               LD+   L +       +  +     +I+ Y K   +  A  +F+ + +++++ W A
Sbjct: 170 ALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTA 229

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           ++A Y  N +  D LK+  +M   G+ P   +  +V+  C+ ++   +G++VH  V  + 
Sbjct: 230 LVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHG-VIDAR 288

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
              +      LI+MY KC   ++A K+F  +QRKD++TWN+MI+ Y Q+G G +AL ++ 
Sbjct: 289 SEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYK 348

Query: 289 KMKDE-----GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           +M++      G+  D ITF+ +L AC+HAGLV    + + SM+ DYG         C++D
Sbjct: 349 RMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLID 408

Query: 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
           LLGRAG L EA + I  MP+ P   I+  LL AC  H  ++ A  AA  +  L P ++ G
Sbjct: 409 LLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDS-G 467

Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 463
            YV L+N+YA  ++WDD+AR+R  M +  V KM G S IE+G V+HEF +GD  HP    
Sbjct: 468 SYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKRE 527

Query: 464 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 523
           I+E+L+ +E  ++  GYVPD++  LH    E KE++  FHSE+LAIAFG+I  P GT +R
Sbjct: 528 IYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELR 587

Query: 524 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           + KNLRVC DCH ATK IS    R+IIVRD  RFH F++G+CSC DYW
Sbjct: 588 IMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 29/253 (11%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K G +  A+ +F   P +N+ +W  M+A +  N    D L LL +M   GI PN
Sbjct: 98  LVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPN 157

Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
           + +   +L   + LS L  G+ +H+ +       D      LI+MY KC  L DAC +F 
Sbjct: 158 SITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFE 217

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  + V+ W A+++ YA +G    AL++F  M  +G++P  +TFV ++  C    +  +
Sbjct: 218 SLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGI 277

Query: 318 GIQYF--------------DSMVNDYGIAAKPDH---------------YTCMVDLLGRA 348
           G +                ++++N YG  A PD                +  M+ + G+ 
Sbjct: 278 GREVHGVIDARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQN 337

Query: 349 GKLVEAVDLIKKM 361
           G   +A+++ K+M
Sbjct: 338 GYGFQALEIYKRM 350



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + P+A  L+  L  C   +++  GK++H  +              L+ MY KCG L+ A 
Sbjct: 53  VSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAK 112

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F    R++V +W  M++ +A +G    AL L + M  EG+ P+SITF+ LL A     
Sbjct: 113 SVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALS 172

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            +D G +     +   G  A      C++++  +   L +A  + + +
Sbjct: 173 WLDRG-RALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESL 219


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/526 (39%), Positives = 293/526 (55%), Gaps = 41/526 (7%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAP----------- 128
           +  AR LF  MP++N   W+ +I  Y   G  + A++L++      V P           
Sbjct: 113 VGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKA 172

Query: 129 ------------VKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
                       V   V  T           ++  Y K G VD A  +FD +  ++ V W
Sbjct: 173 CAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVW 232

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N+MIA Y +N    + L L R M   G+ P  ++L S +   +  ++L  G+++H   ++
Sbjct: 233 NSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWR 292

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
               +     T L+ MY K G ++ A  LF ++ ++++V+WNAMI GY  HG  ++AL+L
Sbjct: 293 RGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKL 352

Query: 287 FDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
           F+KM+ E  + PD+ITFV +L ACNH G+V    ++F  MV+ Y I     H+TC+VD+L
Sbjct: 353 FNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVL 412

Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
           G AG+  EA DLIK MP +P   I+G LL+ C++HK ++L E A   L  L P +A G Y
Sbjct: 413 GHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDA-GNY 471

Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
           V L+NIYA   KW+  AR+R  M    + K+ G SWIE+    H F  GD  HP    I+
Sbjct: 472 VLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIY 531

Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 525
           E+L+ LE  M  AGY+PD     H VG++ K  ++  HSE+LAIAFGLI  P GT + V 
Sbjct: 532 EELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVT 591

Query: 526 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           KNLRVC DCH   K IS I +REII+RD  R+HHF +G CSC DYW
Sbjct: 592 KNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 91/171 (53%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y   G V  A +LFD MP +N+  WN +I  Y  +   E  ++L R M+  G+ 
Sbjct: 101 TKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVE 160

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
           P+  +    L  C+ L  L+ G++VH+ V  +   +D      L+ MY KCG ++DA  +
Sbjct: 161 PDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAV 220

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           F  I+ +D V WN+MI+ Y Q+G+  +AL L   M   G+ P   T V+ +
Sbjct: 221 FDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTI 271



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 196 PNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           PN+    +SVL  C    SL  G+Q+H  +  S L  DT   T L+ +Y  CG +  A +
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           LF  + +++V  WN +I  YA+ G  E A++L+  M D G++PD+ T+
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTY 166



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 119/289 (41%), Gaps = 48/289 (16%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMI 108
           DD  A FD   R+ ++D+  WN+MI+ + Q     +A    RD+          +  + I
Sbjct: 215 DDARAVFD---RIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTI 271

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           S   +   L +  EL      +         T+++  Y K G V +A  LF+++  + LV
Sbjct: 272 SAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELV 331

Query: 165 TWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
           +WNAMI GY  +   ++ LKL  +M +   + P+  +   VL  C+H   ++  K+   L
Sbjct: 332 SWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGL 391

Query: 224 VFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG-------- 273
           +      K T    T L+ +    G  E+A  L   +  + D   W A+++G        
Sbjct: 392 MVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVE 451

Query: 274 --------------------------YAQHGKGEKALRLFDKMKDEGMK 296
                                     YAQ GK EKA R+   M + G+K
Sbjct: 452 LGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLK 500


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 338/625 (54%), Gaps = 56/625 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML--SCILLNSD- 53
           M V+  V+WN+++A FA Q G    A  ++ ++ Q    P+ +++   L  +C   + D 
Sbjct: 294 MAVRNHVSWNAMIAAFA-QCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDL 352

Query: 54  -DVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            +  A   +     ++ D      +++ +     + +AR  F A+P KN VSW+AM++ Y
Sbjct: 353 GESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAY 412

Query: 112 IECGQLDKAVELF-----------------------KVAPVKSVVA-------------- 134
            + G+  +A+ELF                        V+  +S+ A              
Sbjct: 413 GDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSI 472

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
              ++  + + G ++ A   FD    K+ V+WN  +A           +     M   G 
Sbjct: 473 ANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGF 532

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           RP+  +L SV+  C+ L +L+LG+ + Q L     + +D    + +++M  KCG   D C
Sbjct: 533 RPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDEC 592

Query: 254 -KLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLAC 309
            +LF  +   RKD+V WN MI+ YAQHG G KAL+LF  M+    ++PDS TFV++L  C
Sbjct: 593 ERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGC 652

Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           +HAGLV+ GI  F       GI  +P +HY C+VD+LGR G L EA D I+KMP      
Sbjct: 653 SHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSV 712

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++ +LL AC  +  L+  E AA     L  +++ G YV L+NIYAA  +W+D  R+R  M
Sbjct: 713 VWTSLLGACSSYGDLEGGERAARAFIELYRSDSVG-YVVLSNIYAAAGRWEDSIRVREDM 771

Query: 429 KENNVVK-MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
            E  V K  PG S I V   VHEF + DR HP+   I+ +L+ L+  ++ AGYVPD    
Sbjct: 772 AERRVKKRAPGKSSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIREAGYVPDTRLV 831

Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           LH V EE KEQLL +HSEKLAIAFGLI VP    IRV KNLRVC DCH ATK+I+ + +R
Sbjct: 832 LHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQR 891

Query: 548 EIIVRDTTRFHHF-KDGTCSCGDYW 571
           EI VRD  RFHHF KDG CSCGDYW
Sbjct: 892 EIAVRDCNRFHHFGKDGECSCGDYW 916



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 166/370 (44%), Gaps = 34/370 (9%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-------EKNSVSWS 105
           DD  AAF   +   I   A+WNT+I+    + + A   DL+  M          N ++  
Sbjct: 76  DDANAAFSALRSRGI---ATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNRLTII 129

Query: 106 AMISGYIECGQLDKAVELFKVAPV-----------KSVVAWTAMISGYMKFGKVDLAEKL 154
           A++ G I  G    +      A +           + +   TA++  Y K G V+ A ++
Sbjct: 130 AVL-GAIASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEV 188

Query: 155 FDEMPTKNLVTWNAMIAGYVENSWAED-GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           F  +   +L+ WNA I     N    D  L L+R M   G+ PN +S  ++L  C   SS
Sbjct: 189 FSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSS 248

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           L L + +H  V +     D    T L++MY +CG ++++  +F  +  ++ V+WNAMI+ 
Sbjct: 249 LPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAA 308

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-IQYFDSMVNDYGIA 332
           +AQ G    A  ++ +M+ EG +P+ ITFV  L A   +   DLG        +   G+ 
Sbjct: 309 FAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLE 368

Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA----CRVHKRLDLAEF 388
                 T +V + G  G +  A      +P K     +  +L+A     R  + ++L  F
Sbjct: 369 GDVMVGTALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTAYGDNGRAREAMEL--F 425

Query: 389 AAMNLFNLNP 398
           AAM   +L P
Sbjct: 426 AAMKRQSLAP 435



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 14/312 (4%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMI---SGFVQKKNMAK--ARDLFLAMPEKNSVSWSAMIS 109
           V +A + F R+ + D   WN  I   +G  ++ + A    R ++L     N  S+ A++S
Sbjct: 182 VESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILS 241

Query: 110 GYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
              +   L  A  +     ++  +  VV  TA+++ Y + G VD +  +F+ M  +N V+
Sbjct: 242 SCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVS 301

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ--VHQL 223
           WNAMIA + +         +   M   G RPN  +  + L      SS  LG+   +H  
Sbjct: 302 WNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGW 361

Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
           +  + L  D    T L++MY   G ++ A   F  I  K++V+WNAM++ Y  +G+  +A
Sbjct: 362 IACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREA 421

Query: 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343
           + LF  MK + + P+ ++++A+L  C     V         +V +   A +      +V 
Sbjct: 422 MELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARSIHAEVVGNGLFAQESSIANGVVR 478

Query: 344 LLGRAGKLVEAV 355
           +  R+G L EA+
Sbjct: 479 MFARSGSLEEAM 490



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 8/234 (3%)

Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
           ++  Y K   +D A   F  + ++ + TWN +IA     +   D    +++      RPN
Sbjct: 65  LVQMYSKCRSLDDANAAFSALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPN 124

Query: 198 ASSLSSVLLGCSH------LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             ++ +VL   +        SS    + VH  +  S L +D    T L+  Y KCG +E 
Sbjct: 125 RLTIIAVLGAIASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVES 184

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           A ++F  IQ  D++ WNA I   A +  + ++AL L  +M  EG+ P+  +FVA+L +C 
Sbjct: 185 ALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCG 244

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
               + L  +   + V + G        T +V + GR G + E++ + + M  +
Sbjct: 245 DHSSLPLA-RSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVR 297



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
           +L+ +L  C   + L  G+Q+H+ + K  L ++      L+ MY KC  L+DA   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KPDSITFVALLLA 308
           + + + TWN +I   A          L+ +MK E     +P+ +T +A+L A
Sbjct: 86  RSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGA 134


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/569 (36%), Positives = 321/569 (56%), Gaps = 11/569 (1%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S   G    RG  +    + +   +PD+   N +L  + +    ++ A   F  +P KD 
Sbjct: 126 SACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLF-MHVKCGLMLDARKLFDEMPEKDV 184

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ASW TM+ G V   N ++A  LFL M     +  S +++ MI      G +    ++   
Sbjct: 185 ASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSC 244

Query: 127 APVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           A  + V        A+I  Y K G ++ A  +FD+MP K  V WN++IA Y  + ++E+ 
Sbjct: 245 ALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEA 304

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           L L   M   G   +  ++S V+  C+ L+SL+  KQ H  + +     D  A T L+  
Sbjct: 305 LSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDF 364

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
           Y K G +EDA  +F  ++ K+V++WNA+I+GY  HG+G++A+ +F++M  EG+ P  +TF
Sbjct: 365 YSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTF 424

Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +A+L AC+++GL   G + F SM  D+ +  +  HY CM++LLGR   L EA  LI+  P
Sbjct: 425 LAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAP 484

Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
           FKP   ++  LL+ACR+HK L+L + AA  L+ + P      Y+ L N+Y +  K  + A
Sbjct: 485 FKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCN-YIVLLNLYNSSGKLKEAA 543

Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            I  ++K+  +  +P  SW+EV    + F  GD+ H +   I++K+  L   +   GY  
Sbjct: 544 GILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAE 603

Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
           + E  L  V EE ++++L +HSEKLAIAFGLI  P  TP+++ +  RVCGDCH A K I+
Sbjct: 604 ENETLLPDVDEE-EQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIA 662

Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            +  REI+VRD +RFHHF++G+CSCGDYW
Sbjct: 663 MVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
           G G+   AS+  +++  C  L S++  K+V   +  S    D   +  ++ M+ KCG + 
Sbjct: 113 GYGV--GASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLML 170

Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           DA KLF E+  KDV +W  M+ G    G   +A RLF  M  E     S TF  ++ A  
Sbjct: 171 DARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASA 230

Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHY-TC-MVDLLGRAGKLVEAVDLIKKMPFK 364
             GLV +G Q   S     G+    DH+ +C ++D+  + G + +A  +  +MP K
Sbjct: 231 GLGLVQVGKQ-IHSCALKRGVG--DDHFVSCALIDMYSKCGSIEDAHCVFDQMPEK 283



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 31/285 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLS-CILLNS-DD 54
           M  KTTV WNS++A +A   G  ++A  L+    D     D  + +I++  C  L S + 
Sbjct: 280 MPEKTTVGWNSIIASYALH-GYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEH 338

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     R         NT +  F  K   M  AR +F  M  KN +SW+A+I+GY  
Sbjct: 339 AKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGN 398

Query: 114 CGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
            GQ  +AVE+F+      V P    V + A++S     G      ++F  M   + V   
Sbjct: 399 HGQGQEAVEMFEQMLQEGVTPTH--VTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPR 456

Query: 168 AM-IAGYVE----NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
           AM  A  +E     S  ++   L+R       +P A+  +++L  C    +L+LGK   +
Sbjct: 457 AMHYACMIELLGRESLLDEAYALIRTA---PFKPTANMWAALLTACRMHKNLELGKLAAE 513

Query: 223 LVF---KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
            ++      LC        L+++Y   G L++A  +   +++K +
Sbjct: 514 KLYGMEPEKLCNYIV----LLNLYNSSGKLKEAAGILQTLKKKGL 554



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 24/209 (11%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           T +  N+ L  F  + G+++DA+ +F+++   +V+S+N +++    +     A   F Q 
Sbjct: 353 TDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQM 412

Query: 65  LPIKDTASWNTMI--------SGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGY 111
           L    T +  T +        SG  Q     +  ++F +M   + V      ++ MI   
Sbjct: 413 LQEGVTPTHVTFLAVLSACSYSGLSQ-----RGWEIFYSMKRDHKVKPRAMHYACMIELL 467

Query: 112 IECGQLDKAVELFKVAPVKSVV-AWTAMISGYMKFGKVDL----AEKLFDEMPTKNLVTW 166
                LD+A  L + AP K     W A+++       ++L    AEKL+   P K L  +
Sbjct: 468 GRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEK-LCNY 526

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             ++  Y  +   ++   +L+ +   G+R
Sbjct: 527 IVLLNLYNSSGKLKEAAGILQTLKKKGLR 555


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/514 (36%), Positives = 311/514 (60%), Gaps = 38/514 (7%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFF 62
             V+W ++L GFA+  GK+ +A++LFD++P  +VVS+N M++  +  L  D+ V     F
Sbjct: 234 NAVSWVTMLCGFARH-GKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAV---KLF 289

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------- 97
           +  P KD  SW TMI+G+V+   + +AR+++  MP                         
Sbjct: 290 KETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQ 349

Query: 98  ------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
                 +++++ W++MI+GY + G++ +A+ LF+  PVK+ V+W  MISGY + G++D A
Sbjct: 350 VFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRA 409

Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211
            ++F+ M  +N+++WN++I G+++N    D LK L +M   G +P+ S+ +  L  C++L
Sbjct: 410 TEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANL 469

Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
           ++LQ+GKQ+H+L+ KS    D      LI+MY KCG ++ A K+F +I+  D+++WN++I
Sbjct: 470 AALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLI 529

Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
           SGYA +G   +A   F++M  EG  PD +TF+ +L AC+HAGL + G+  F  M+  + I
Sbjct: 530 SGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAI 589

Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 391
               +HY+C+VDLLGR G+L EA ++++ M  K    ++G+LL+ACRVHK ++L + AA+
Sbjct: 590 EPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAAL 649

Query: 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451
            L  L P NA+  Y+ L+N++A   +W+DV R+R+ M+E    K+PG SWIEV   +  F
Sbjct: 650 RLLELEPHNASN-YITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQNQIQNF 708

Query: 452 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
            S D       SI   L  L   M+    + D++
Sbjct: 709 VSDDPGKLRTESIKIILNTLSAHMRDKCNISDMK 742



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 235/466 (50%), Gaps = 57/466 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M+ +  V+WN+++AG+      +++A +LFD + + D  S+ +M++C             
Sbjct: 74  MSQRNLVSWNTMIAGYL-HNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKAREL 132

Query: 50  --LNSDDVVAA--------------FD----FFQRLPIKDTASWNTMISGFVQKKNMAKA 89
             L  D +  A              FD     F+++P+KD  S+N+M++G+ Q   M  A
Sbjct: 133 FELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLA 192

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
              F  M E+N VSW+ M++G++    L  A ELF+  P  + V+W  M+ G+ + GK+ 
Sbjct: 193 MKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIV 252

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
            A KLFD MP KN+V+WNAMIA YV++   ++ +KL +         +  S ++++ G  
Sbjct: 253 EARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKET----PYKDCVSWTTMINGYV 308

Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
            +  L   ++V+    + P  KD  A T L+S   + G +++A ++F ++ ++D + WN+
Sbjct: 309 RVGKLDEAREVYN---QMPY-KDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNS 364

Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           MI+GY Q G+  +AL LF +M  +    +++++  ++     AG +D   + F++M    
Sbjct: 365 MIAGYCQSGRMSEALNLFRQMPVK----NAVSWNTMISGYAQAGEMDRATEIFEAM---- 416

Query: 330 GIAAKPDHYTCMVDLLGRAGKL--VEAVDLIKKMPFKPQPAIFGTLLSAC------RVHK 381
           G+       + +   L     L  ++++ L+ +   KP  + F   LS+C      +V K
Sbjct: 417 GVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGK 476

Query: 382 RLDLAEFAAMNLFNLNPANA-AGCYVQLANIYAAMKKWDDVARIRL 426
           +L      +  + +L  +NA    Y +   + +A K + D+  + L
Sbjct: 477 QLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDL 522



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 208/430 (48%), Gaps = 50/430 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K   N N  +    KQ GK+ +A+ +F  +   +  +YN M++ +   +  V  A   F 
Sbjct: 15  KNVFNQNKKIIYLGKQ-GKIDEAKRVFSNVIHKNHATYNSMVT-VFAKNGRVSDARQLFD 72

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           ++  ++  SWNTMI+G++    + +A  LF  M E+++ SW+ MI+ Y   G L+KA EL
Sbjct: 73  KMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKAREL 132

Query: 124 FKVAPVK-SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           F++ P K     W AMI+GY K G+ D AEK+F++MP K+LV++N+M+AGY +N      
Sbjct: 133 FELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLA 192

Query: 183 LKLLRMMIGLGI---------------------------RPNASSLSSVLLGCSHLSSLQ 215
           +K    M    +                            PNA S  ++L G +    + 
Sbjct: 193 MKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIV 252

Query: 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 275
             ++    +F    CK+  +   +I+ Y +   +++A KLF E   KD V+W  MI+GY 
Sbjct: 253 EARK----LFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYV 308

Query: 276 QHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           + GK ++A  ++++M  KD   K       AL+      G +D   Q F  +     I  
Sbjct: 309 RVGKLDEAREVYNQMPYKDVAAK------TALMSGLIQNGRIDEASQVFSQLNKRDAIC- 361

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAM 391
               +  M+    ++G++ EA++L ++MP K     + T++S       +D A   F AM
Sbjct: 362 ----WNSMIAGYCQSGRMSEALNLFRQMPVK-NAVSWNTMISGYAQAGEMDRATEIFEAM 416

Query: 392 NLFNLNPANA 401
            + N+   N+
Sbjct: 417 GVRNVISWNS 426



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 160/322 (49%), Gaps = 27/322 (8%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV 174
           G++D+A  +F     K+   + +M++ + K G+V  A +LFD+M  +NLV+WN MIAGY+
Sbjct: 31  GKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYL 90

Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDT 233
            N+  E+  KL  +M     R N S   ++++ C +    L+  +++ +LV   P   DT
Sbjct: 91  HNNMVEEAHKLFDLM---AERDNFS--WALMITCYTRKGMLEKARELFELV---PDKLDT 142

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
                +I+ Y K G  +DA K+F ++  KD+V++N+M++GY Q+GK   A++ F++M + 
Sbjct: 143 ACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAER 202

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQY--FDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
            +   ++     +  C      DLG  +  F+ + +   ++     +  M+    R GK+
Sbjct: 203 NVVSWNLMVAGFVNNC------DLGSAWELFEKIPDPNAVS-----WVTMLCGFARHGKI 251

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411
           VEA  L  +MP K    +    + A  V    DL    A+ LF   P      +  + N 
Sbjct: 252 VEARKLFDRMPCK--NVVSWNAMIAAYVQ---DLQIDEAVKLFKETPYKDCVSWTTMING 306

Query: 412 YAAMKKWDDVARIRLSMKENNV 433
           Y  + K D+   +   M   +V
Sbjct: 307 YVRVGKLDEAREVYNQMPYKDV 328


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 322/614 (52%), Gaps = 51/614 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNSDDVVAAFD 60
            V WN+++     Q G  ++A E+F ++ Q    PD+V++ ++  +C    S        
Sbjct: 195 VVLWNAMITA-NSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKG 253

Query: 61  FFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           F   L       D      +++ + +   +  AR  F  MPE+N+VSW++MI+ + + G 
Sbjct: 254 FHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGH 313

Query: 117 LDKAVELFK------VAPVKS--------------------------VVAWTAMISGY-M 143
           L  AVE F       V P +S                          VV   A+++   M
Sbjct: 314 L-LAVETFHAMLLEGVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVM 372

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNA-----MIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198
            + + D  E        +    W+A     MIA Y +        KL    I  GI P+ 
Sbjct: 373 AYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDR 432

Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFL 257
               + L  C+ L++L  G+Q+H  V     L +D T    ++SMY +CG L DA   F 
Sbjct: 433 ILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFD 492

Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
            +  +D ++WNAM+S  AQHG+ E    LF  M  EG   + I F+ LL AC HAGLV  
Sbjct: 493 GMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKA 552

Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
           G ++F +M  D+G+    +HY CMVDLLGR G+L +A  +++ MP  P  A +  L+ AC
Sbjct: 553 GCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGAC 612

Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
           R++   +   FAA  +  L   + A  YV L NIY+A  +WDD A +R  M +  + K+P
Sbjct: 613 RIYGDTERGRFAAERVLELRADHTAA-YVALCNIYSAAGRWDDAAAVRKIMADLGLRKIP 671

Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
           G S IE+ + VHEF   DR HP+  +I+ +L+ +   ++ AGY       LH V EE KE
Sbjct: 672 GVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKE 731

Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
           QLL FHSEKLAIAFG++  P G+ +RV KNLRVC DCH A+K+IS +  REI+VRD  RF
Sbjct: 732 QLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRF 791

Query: 558 HHFKDGTCSCGDYW 571
           HHFKDG CSCGDYW
Sbjct: 792 HHFKDGACSCGDYW 805



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 148/293 (50%), Gaps = 10/293 (3%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           ++++  Y++ G ++ A  +F ++  K++V W  +I+ YV    +   + L   ++  GI 
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIA 125

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +A    SVL  CS    L  G+ +H+   ++ L       + L+SMY +CG L DA  L
Sbjct: 126 LDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANAL 185

Query: 256 FLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-G 313
           F  ++R  DVV WNAMI+  +Q+G   +AL +F +M   G+ PD +TFV++  AC+ +  
Sbjct: 186 FGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPS 245

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           L    ++ F + +++ G+ +     T +V+   R G++  A     +MP +   +    +
Sbjct: 246 LRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMI 305

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
            +  ++   L +  F AM L  + P          + ++AA++  +D+   RL
Sbjct: 306 AAFTQIGHLLAVETFHAMLLEGVVPTR--------STLFAALEGCEDLRVARL 350



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 14/273 (5%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWS 105
           L    + +A D F ++  K    W  +IS +V + + A A  LF  + ++    +++ + 
Sbjct: 73  LRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFV 132

Query: 106 AMISG-----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT 160
           +++S      ++  G+L     +     ++ +VA +A++S Y + G +  A  LF  +  
Sbjct: 133 SVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVA-SALVSMYGRCGSLRDANALFGHLER 191

Query: 161 K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-- 217
             ++V WNAMI    +N    + L++   M+ LGI P+  +  SV   CS   SL+    
Sbjct: 192 HLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQV 251

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
           K  H  + ++ L  D    T L++ Y +CG+++ A K F E+  ++ V+W +MI+ + Q 
Sbjct: 252 KGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQI 311

Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
           G    A+  F  M  EG+ P   T  A L  C 
Sbjct: 312 GH-LLAVETFHAMLLEGVVPTRSTLFAALEGCE 343



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 1/146 (0%)

Query: 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
           +D    + L+ MY +CG LE A  +F +I  K +V W  +IS Y   G    A+ LF ++
Sbjct: 60  RDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRI 119

Query: 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350
             EG+  D+I FV++L AC+    +  G +       + G+  +    + +V + GR G 
Sbjct: 120 LQEGIALDAIVFVSVLSACSSEEFLAAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGS 178

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSA 376
           L +A  L   +       ++  +++A
Sbjct: 179 LRDANALFGHLERHLDVVLWNAMITA 204


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 328/605 (54%), Gaps = 58/605 (9%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLN-------------------------------- 51
           + A ELFDK+   DV+S+N M+S  + N                                
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 52  -SDDVVAAFDFFQRLPIKDTASW-----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
            +   ++       L IK T        NT++  + +  ++  A  +F  M E+N VSW+
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
           +MI+GY   G+ D A+ L +    + V    VA T+++    + G +D  + + D +   
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 162 N----LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI----------RPNASSLSSVLLG 207
           N    L   NA++  Y +    +    +   M+   I          +P++ +++ +L  
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPA 441

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C+ LS+L+ GK++H  + ++    D      L+ +Y KCG L  A  LF  I  KD+V+W
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
             MISGY  HG G +A+  F++M+D G++PD ++F+++L AC+H+GL++ G ++F  M N
Sbjct: 502 TVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
           D+ I  K +HY CMVDLL R G L +A + I+ +P  P   I+G LL  CR++  ++LAE
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAE 621

Query: 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
             A  +F L P N  G YV LANIYA  +KW++V R+R  + +  + K PG SWIE+   
Sbjct: 622 KVAERVFELEPEN-TGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680

Query: 448 VHEFRSGDR-VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
           V+ F SG+   HP    I   LK++ ++MK  GY P  ++AL    E  KE  L  HSEK
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 740

Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
           LA+AFGL+ +P    +RV KNLRVCGDCH   K++S   +REI++RD+ RFHHFK+G CS
Sbjct: 741 LAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCS 800

Query: 567 CGDYW 571
           C  +W
Sbjct: 801 CRGFW 805



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 171/319 (53%), Gaps = 33/319 (10%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++S +    ++ + R +F  M +KN   W+ M+S Y + G   +++ LFK+         
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKI--------- 190

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
             M+   ++  + + A +LFD++  +++++WN+MI+GYV N   E GL++ + M+ LGI 
Sbjct: 191 --MVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGID 248

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            + +++ SVL+GC++  +L LGK VH L  KS   +       L+ MY KCGDL+ A ++
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F ++  ++VV+W +MI+GY + G+ + A+RL  +M+ EG+K D +   ++L AC  +G +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSL 368

Query: 316 DLGIQYFDSMVNDYGIA--AKPDHYTC--MVDLLGRAGKLVEAVDLIKKM---------- 361
           D G       V+DY  A   + + + C  ++D+  + G +  A  +   M          
Sbjct: 369 DNGKD-----VHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNT 423

Query: 362 ---PFKPQPAIFGTLLSAC 377
                KP       +L AC
Sbjct: 424 MIGELKPDSRTMACILPAC 442



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 73/383 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G LK+ + +FD + + +V  +N M+S       +     DF + + +     +  M+   
Sbjct: 148 GDLKEGRRVFDTMEKKNVYLWNFMVS-------EYAKIGDFKESICL-----FKIMVEKG 195

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK----------VAPVK 130
           ++ K    A +LF  + +++ +SW++MISGY+  G  ++ +E++K          +A + 
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATII 255

Query: 131 SVVAWTA-----------------------------MISGYMKFGKVDLAEKLFDEMPTK 161
           SV+   A                             ++  Y K G +D A ++F++M  +
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315

Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
           N+V+W +MIAGY  +  ++  ++LL+ M   G++ +  + +S+L  C+   SL  GK VH
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVH 375

Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
             +  + +  +      L+ MY KCG ++ A  +F  +  KD+++WN MI        GE
Sbjct: 376 DYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI--------GE 427

Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
                        +KPDS T   +L AC     ++ G +    ++ + G ++       +
Sbjct: 428 -------------LKPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANAL 473

Query: 342 VDLLGRAGKLVEAVDLIKKMPFK 364
           VDL  + G L  A  L   +P K
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSK 496



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 151/362 (41%), Gaps = 68/362 (18%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           +N+++ L     + G L  A  +F+K+ + +VVS+  M++    +  SD  +      ++
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK 345

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
             +K D  +  +++    +  ++   +D+   +     E N    +A++  Y +CG +D 
Sbjct: 346 EGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDG 405

Query: 120 AVELFKVAPVKSVVAWTAMISG-------------------------------------- 141
           A  +F    VK +++W  MI                                        
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSS 465

Query: 142 -----------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
                      Y+K G + LA  LFD +P+K+LV+W  MI+GY  + +  + +     M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMR 525

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKC 246
             GI P+  S  S+L  CSH   L+ G +   ++       P  +    +  L+S   + 
Sbjct: 526 DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS---RT 582

Query: 247 GDLEDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           G+L  A + F+E      D   W A++ G   +   E A ++ +++ +  ++P++  +  
Sbjct: 583 GNLSKAYE-FIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE--LEPENTGYYV 639

Query: 305 LL 306
           LL
Sbjct: 640 LL 641



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 54/252 (21%)

Query: 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
           + +  +NA I  + +    E+ ++L+ M     +     + SSVL  C+   SL  GK+V
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSELE--TKTYSSVLQLCAGSKSLTDGKKV 121

Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDL------------------------------- 249
           H ++  + +  D      L+S+Y  CGDL                               
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 250 --------------------EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                               E A +LF ++  +DV++WN+MISGY  +G  E+ L ++ +
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M   G+  D  T +++L+ C ++G + LG +   S+        + +    ++D+  + G
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 350 KLVEAVDLIKKM 361
            L  A+ + +KM
Sbjct: 301 DLDGALRVFEKM 312



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 16/191 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G L  A+ LFD IP  D+VS+ +M+S   ++   ++ +A F+  +   I+ D  S+ +++
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVK-S 131
                   + +    F  M    ++      ++ M+      G L KA E  +  P+   
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFD---EMPTKNLVTWNAMIAGYVE-NSWAEDGLKLLR 187
              W A++ G   +  ++LAEK+ +   E+  +N   +  +   Y E   W E  +K +R
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEE--VKRMR 658

Query: 188 MMIG-LGIRPN 197
             IG  G+R N
Sbjct: 659 EKIGKKGLRKN 669


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 274/436 (62%), Gaps = 3/436 (0%)

Query: 138 MISGYMKFGKVDL--AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           +I  Y  FG   L  A  +FD MP ++ VTW+AMI GYV    + D + L R M   G++
Sbjct: 168 LIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQ 227

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +  ++  VL   + L +L+L + V + V +  + K  T    LI    KCGD++ A  +
Sbjct: 228 ADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAV 287

Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
           F  +Q++ VV+W ++I   A  G+G++A+R+F++MK  G+ PD + F+ +L AC+HAG+V
Sbjct: 288 FEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMV 347

Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375
           D G  YFD+M  +YGI  K +HY CMVD+ GRAG +  A++ ++ MP +P P I+ +L+S
Sbjct: 348 DEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVS 407

Query: 376 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435
           ACR H RL+L E    +L +  PA+ A  Y+ L+N++A  ++W + + IR  M +  + K
Sbjct: 408 ACRAHGRLELGESITRSLLHEYPAHEAN-YIMLSNVFALTQRWKEKSEIRREMSKRGIKK 466

Query: 436 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 495
           +PG S +E+   VHEF +GD  HP+   I+  ++E+ + ++  G++      L  + EE 
Sbjct: 467 VPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEED 526

Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
           KE  L +HSEKLAIAF L++ P GT +RV KNLRVC DCH A K IS + +REI+VRD +
Sbjct: 527 KEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRS 586

Query: 556 RFHHFKDGTCSCGDYW 571
           RFH FKDG+CSC D+W
Sbjct: 587 RFHRFKDGSCSCKDFW 602



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 41/280 (14%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A + F R+P +   +W+ MI G+V+    + A DLF  M     + + V+   +++   +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242

Query: 114 CGQLDKA--VELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
            G L+ A  V  F  +    KSV    A+I    K G VD A  +F+ M  +++V+W ++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I         ++ +++   M   G+ P+  +   VL  CSH   +  G            
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG------------ 350

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
                           CG   DA K+   I+ K +  +  M+  + + G  E+A+     
Sbjct: 351 ----------------CGYF-DAMKVEYGIEPK-IEHYGCMVDMFGRAGMVERAMEFVRT 392

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
           M    ++P+ + + +L+ AC   G ++LG     S++++Y
Sbjct: 393 MP---IQPNPVIWRSLVSACRAHGRLELGESITRSLLHEY 429



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 6/178 (3%)

Query: 188 MMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
           +M+   + PN  +   +L  C+ L  S  +G Q H    K     D      LI MY  C
Sbjct: 116 LMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY-SC 174

Query: 247 ---GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
              G L DA  +F  + ++  VTW+AMI GY + G    A+ LF +M+  G++ D +T +
Sbjct: 175 FGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVI 234

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
            +L A    G ++L  ++    V   GI         ++D L + G +  AV + + M
Sbjct: 235 GVLAAATDLGALELA-RWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 322/558 (57%), Gaps = 15/558 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           AQ + +   Q   + + ++ SC   ++ D   A   FQ     +   +  +I GFV   N
Sbjct: 53  AQLIRNGHSQDPFMVFELLRSCSKCHAIDY--ASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIE-CGQ---LDKAVEL----FKVAPVKSVVAWTA 137
              A  L+  M   + +  + +++  ++ CG    L +  E+     K+    + +    
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 170

Query: 138 MISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
           ++  Y K G++  A ++F+EMP     K+ V W AMI G+V N      L+  R M G  
Sbjct: 171 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 230

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           +RPN  ++  VL  CS L +L++G+ VH  + K  +  +      LI+MY +CG +++A 
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290

Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
            +F E++ +DV+T+N MISG + +GK  +A+ LF  M    ++P ++TFV +L AC+H G
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 350

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
           LVD G + F SM  DYG+  + +HY CMVDLLGR G+L EA DLI+ M   P   + GTL
Sbjct: 351 LVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 410

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           LSAC++HK L+L E  A  L +   A+ +G YV L+++YA+  KW + A++R  MKE  +
Sbjct: 411 LSACKMHKNLELGEQVAKVLEDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 469

Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
            K PG S IEV   +HEF  GD  HP    I+EKL+EL + ++L GY P+ E  L  + +
Sbjct: 470 QKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIED 529

Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
             KE  L  HSE+LAI +GLI     T IRV KNLRVC DCH A K I+ I +R+++VRD
Sbjct: 530 GEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRD 589

Query: 554 TTRFHHFKDGTCSCGDYW 571
             RFH+F++G CSCGDYW
Sbjct: 590 RNRFHYFENGACSCGDYW 607



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 147/350 (42%), Gaps = 73/350 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L DA+ +F+++P+                  DVVA          KDT  W  MI GF
Sbjct: 179 GELGDARRVFEEMPE------------------DVVA----------KDTVCWTAMIDGF 210

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVE--------LFKVAPVKS 131
           V+ + M +A + F  M  +N       I   +  C QL  A+E        + K     +
Sbjct: 211 VRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG-ALEIGRWVHSYMRKFEIELN 269

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
           +    A+I+ Y + G +D A+ +FDEM  ++++T+N MI+G   N  +   ++L R+MIG
Sbjct: 270 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG 329

Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
             +RP   +   VL  CSH   +  G +    +F S + +D   + P I  Y        
Sbjct: 330 RRLRPTNVTFVGVLNACSHGGLVDFGFK----IFHS-MTRD-YGVEPQIEHY-------- 375

Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
                             M+    + G+ E+A  L   MK   M PD I    LL AC  
Sbjct: 376 ----------------GCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKM 416

Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
              ++LG Q    ++ D G  A    Y  +  +   +GK  EA  +  KM
Sbjct: 417 HKNLELGEQ-VAKVLEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKM 464



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 211 LSSLQLGKQVHQLV------FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
           +S LQ  K ++Q++       ++   +D   +  L+    KC  ++ A ++F      +V
Sbjct: 36  ISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 95

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
             + A+I G+   G    A++L+ +M  + + PD+    ++L AC     +  G +   S
Sbjct: 96  YLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE-VHS 154

Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
                G+++       +++L G+ G+L +A  + ++MP
Sbjct: 155 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 192


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 282/476 (59%), Gaps = 18/476 (3%)

Query: 14  AGFAKQRG------KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           AG    RG      KL  A++ F      D  S N  LS       D    FD    +  
Sbjct: 143 AGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLS-------DAKKVFD---EMTT 192

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D  SWNT ++  V++  +  AR +F  MPEK++VSW+ M+ GY + G+ +KA ELF+  
Sbjct: 193 RDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRM 252

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P ++VV+W+ ++S Y K G +++A  +FD+MP KNLVTW  M++   +    E+  +L  
Sbjct: 253 PGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFT 312

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+   I  +  ++ S+L  C+   SL LGK++H+ V +  L + T     L+ M+CKCG
Sbjct: 313 EMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCG 372

Query: 248 DLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            +  A  +F  EI  KD+V+WN +I G+A HG GEKAL LF +MK +G  PD++T + +L
Sbjct: 373 CVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVL 432

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC H GLV+ G ++F +M  DYGI  + +HY CMVDLLGR G + EAVD+IK+MP++P 
Sbjct: 433 SACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPN 492

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             I+G+LLSACR+HK ++ AE A   L NL P ++AG Y  L+NIYA   KW D+A+ R+
Sbjct: 493 EVIWGSLLSACRLHKNVEYAELAVNELSNLQP-SSAGNYAVLSNIYAEAGKWSDMAKARV 551

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            MK     K  G SWIE+    HEF  GDR HPE   I + +  L   +K  G VP
Sbjct: 552 QMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFVGCVP 607



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 160/325 (49%), Gaps = 31/325 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K TV+WN++L G+AK  G+ + A ELF ++P  +VVS++ ++S      D  +A   
Sbjct: 221 MPEKDTVSWNTMLDGYAKA-GEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARV- 278

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
            F ++P K+  +W  M+S   QK  + +A  LF  M     E + ++  ++++   E G 
Sbjct: 279 IFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGS 338

Query: 117 L------DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLVTWNAM 169
           L       + V   K++  +S +   A++  + K G V+ A+ +FD E+  K+LV+WN +
Sbjct: 339 LALGKRIHRHVRQRKLS--RSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNII 396

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I G+  +   E  L+L   M   G  P+A +L +VL  C+H+  ++ G++     F + +
Sbjct: 397 IGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRR-----FFANM 451

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLE----IQR----KDVVTWNAMISGYAQHGKGE 281
             D   + P I  Y    DL     L  E    I+R     + V W +++S    H   E
Sbjct: 452 ETD-YGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVE 510

Query: 282 KALRLFDKMKDEGMKPDSITFVALL 306
            A    +++ +  ++P S    A+L
Sbjct: 511 YAELAVNELSN--LQPSSAGNYAVL 533



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 92  LFLAMP--EKNSVSWSAMISGYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFG 146
           +FL +P  ++ + ++S +I      G          + K+   +      A+I  Y K  
Sbjct: 119 VFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQ 178

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            +  A+K+FDEM T+++V+WN  +A  V     +      R M       +  S +++L 
Sbjct: 179 GLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAA----RSMFDEMPEKDTVSWNTMLD 234

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
           G +        ++  +L  + P  ++  + + ++S YCK GD+E A  +F ++  K++VT
Sbjct: 235 GYAKAGE---AEKAFELFQRMP-GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVT 290

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           W  M+S  AQ G  E+A RLF +M D  ++ D I  V++L AC  +G + LG
Sbjct: 291 WTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALG 342



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           L + + + +R   +   S L+     + L   +  H  V K    +DT     LI  Y K
Sbjct: 117 LAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSK 176

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
              L DA K+F E+  +DVV+WN  ++   + G+ + A  +FD+M ++    D++++  +
Sbjct: 177 NQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTM 232

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L     AG  +   + F  M     ++     ++ +V    + G +  A  +  KMP K 
Sbjct: 233 LDGYAKAGEAEKAFELFQRMPGRNVVS-----WSTVVSAYCKKGDMEMARVIFDKMPAK- 286

Query: 366 QPAIFGTLLSAC 377
               +  ++SAC
Sbjct: 287 NLVTWTIMVSAC 298


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 325/575 (56%), Gaps = 42/575 (7%)

Query: 26  AQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFF----QR-LPIKDTASWNTM-- 76
           A++LFD+IP    D V Y  ++ C        + A  F+    QR LP+   A    +  
Sbjct: 68  ARKLFDRIPHSHKDSVDYTALIRC-----SHPLDALRFYLQMRQRALPLDGVALICALGA 122

Query: 77  -----ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                 S  V + ++   +  FL    +++   + ++ GY++CG + +A  +F+     S
Sbjct: 123 CSKLGDSNLVPQMHVGVVKFGFL----RHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPS 178

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI- 190
           VV+WT ++ G +K   V+  + +FDEMP +N V W  +I GYV + + ++   LL+ M+ 
Sbjct: 179 VVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVF 238

Query: 191 --GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKC 246
             G G   N+ +L SVL  CS    + +G+ VH    K+ +  D   +  T L+ MY KC
Sbjct: 239 GCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKA-VGWDLGVMVGTSLVDMYAKC 297

Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
           G +  A  +F  + R++VV WNAM+ G A HG G+  + +F  M +E +KPD++TF+ALL
Sbjct: 298 GRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVTFMALL 356

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            +C+H+GLV+ G QYF  +   YGI  + +HY CMVDLLGRAG+L EA DL+KK+P  P 
Sbjct: 357 SSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPN 416

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             + G+LL AC  H +L L E     L  ++P N    ++ L+N+YA   K D    +R 
Sbjct: 417 EVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEY-HILLSNMYALCGKADKANSLRK 475

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
            +K   + K+PG S I V   +H F +GD+ HP    I+ KL ++  +++LAGYVP+   
Sbjct: 476 VLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNC 535

Query: 487 AL----------HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 536
            +              EEV EQ+L  HSEKLA+ FGL+  P  +P+ +FKNLR+C DCH 
Sbjct: 536 QVLFGCSNGDDCMEAFEEV-EQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHS 594

Query: 537 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           A K  S I KREI+VRD  RFH FK G+CSC DYW
Sbjct: 595 AIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 25/169 (14%)

Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACKLFLEI- 259
           S+L  C+  S+++ G+Q+H     S L    ++  L  L+ +Y  C     A KLF  I 
Sbjct: 17  SLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRIP 76

Query: 260 -QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-------- 310
              KD V + A+I    +      ALR + +M+   +  D +  +  L AC+        
Sbjct: 77  HSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLV 132

Query: 311 ---HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
              H G+V  G      ++N  G+    D Y     L+G A ++ E ++
Sbjct: 133 PQMHVGVVKFGFLRHTKVLN--GVM---DGYV-KCGLVGEARRVFEEIE 175


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 282/476 (59%), Gaps = 18/476 (3%)

Query: 14  AGFAKQRG------KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           AG    RG      KL  A++ F      D  S N  LS       D    FD    +  
Sbjct: 215 AGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLS-------DAKKVFD---EMTT 264

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D  SWNT ++  V++  +  AR +F  MPEK++VSW+ M+ GY + G+ +KA ELF+  
Sbjct: 265 RDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRM 324

Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           P ++VV+W+ ++S Y K G +++A  +FD+MP KNLVTW  M++   +    E+  +L  
Sbjct: 325 PGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFT 384

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            M+   I  +  ++ S+L  C+   SL LGK++H+ V +  L + T     L+ M+CKCG
Sbjct: 385 EMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCG 444

Query: 248 DLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
            +  A  +F  EI  KD+V+WN +I G+A HG GEKAL LF +MK +G  PD++T + +L
Sbjct: 445 CVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVL 504

Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
            AC H GLV+ G ++F +M  DYGI  + +HY CMVDLLGR G + EAVD+IK+MP++P 
Sbjct: 505 SACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPN 564

Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
             I+G+LLSACR+HK ++ AE A   L NL P ++AG Y  L+NIYA   KW D+A+ R+
Sbjct: 565 EVIWGSLLSACRLHKNVEYAELAVNELSNLQP-SSAGNYAVLSNIYAEAGKWSDMAKARV 623

Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
            MK     K  G SWIE+    HEF  GDR HPE   I + +  L   +K  G VP
Sbjct: 624 QMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFVGCVP 679



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 15/230 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K TV+WN++L G+AK  G+ + A ELF ++P  +VVS++ ++S      D  +A   
Sbjct: 293 MPEKDTVSWNTMLDGYAKA-GEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARV- 350

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
            F ++P K+  +W  M+S   QK  + +A  LF  M     E + ++  ++++   E G 
Sbjct: 351 IFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGS 410

Query: 117 L------DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD-EMPTKNLVTWNAM 169
           L       + V   K++  +S +   A++  + K G V+ A+ +FD E+  K+LV+WN +
Sbjct: 411 LALGKRIHRHVRQRKLS--RSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNII 468

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
           I G+  +   E  L+L   M   G  P+A +L +VL  C+H+  ++ G++
Sbjct: 469 IGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRR 518



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 92  LFLAMP--EKNSVSWSAMISGYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFG 146
           +FL +P  ++ + ++S +I      G          + K+   +      A+I  Y K  
Sbjct: 191 VFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQ 250

Query: 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
            +  A+K+FDEM T+++V+WN  +A  V     +      R M       +  S +++L 
Sbjct: 251 GLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAA----RSMFDEMPEKDTVSWNTMLD 306

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
           G +        ++  +L  + P  ++  + + ++S YCK GD+E A  +F ++  K++VT
Sbjct: 307 GYAKAGE---AEKAFELFQRMP-GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVT 362

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
           W  M+S  AQ G  E+A RLF +M D  ++ D I  V++L AC  +G + LG
Sbjct: 363 WTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALG 414



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
           L + + + +R   +   S L+     + L   +  H  V K    +DT     LI  Y K
Sbjct: 189 LAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSK 248

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
              L DA K+F E+  +DVV+WN  ++   + G+ + A  +FD+M ++    D++++  +
Sbjct: 249 NQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTM 304

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L     AG  +   + F  M     ++     ++ +V    + G +  A  +  KMP K 
Sbjct: 305 LDGYAKAGEAEKAFELFQRMPGRNVVS-----WSTVVSAYCKKGDMEMARVIFDKMPAK- 358

Query: 366 QPAIFGTLLSAC 377
               +  ++SAC
Sbjct: 359 NLVTWTIMVSAC 370


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/549 (39%), Positives = 331/549 (60%), Gaps = 19/549 (3%)

Query: 37   DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ-KKNMAKARDLFLA 95
            DV   N +L+ +   +D +      F ++P  D  SWN+ I    + + ++ +A   FL 
Sbjct: 591  DVSVSNALLT-LYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLE 649

Query: 96   MPEK----NSVSWS---AMISGYIECG---QLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
            M +     N V++    A +S +   G   Q+   +  + VA   ++    A+++ Y K 
Sbjct: 650  MMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIE--NALLAFYGKC 707

Query: 146  GKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
             +++  E +F  M  + + V+WN+MI+GY+ +      + L+  M+  G + +  + ++V
Sbjct: 708  EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATV 767

Query: 205  LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
            L  C+ +++L+ G +VH    ++ L  D    + L+ MY KCG ++ A + F  +  +++
Sbjct: 768  LSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNI 827

Query: 265  VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
             +WN+MISGYA+HG G+KAL++F +MK  G  PD +TFV +L AC+H GLVD G ++F S
Sbjct: 828  YSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKS 887

Query: 325  MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA-CRVHKR- 382
            M   YG++ + +H++CMVDLLGRAG + +  D IK MP  P   I+ T+L A CR + R 
Sbjct: 888  MGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRN 947

Query: 383  LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
             +L + AA  L  L P NA   YV L+N++AA   W+DV   RL+M++  V K  G SW+
Sbjct: 948  TELGQRAAKMLIELEPQNAVN-YVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWV 1006

Query: 443  EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
             +   VH F +GD+ HPE   I+EKLKEL  +++ AGYVP+ ++AL+ +  E KE+LL +
Sbjct: 1007 NMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSY 1066

Query: 503  HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
            HSEKLAIAF L +     PIR+ KNLRVCGDCH A KYIS I  R+II+RD+ RFHHF  
Sbjct: 1067 HSEKLAIAFVLTRKS-ELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGG 1125

Query: 563  GTCSCGDYW 571
            G CSCGDYW
Sbjct: 1126 GMCSCGDYW 1134



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 15/378 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +N ++ V   S    F+  +   +  QE+   + +  +V   I +   L+N      A D
Sbjct: 449 INSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAID 508

Query: 61  ----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECG 115
                FQ +P KDT SWN+MISG    +   +A   F  M     V S  ++IS    C 
Sbjct: 509 NACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCS 568

Query: 116 QLDKAV-------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
            L           E FK      V    A+++ Y +   ++  +K+F +MP  + V+WN+
Sbjct: 569 SLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNS 628

Query: 169 MIAGYVE-NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
            I    +  +     LK    M+  G RPN  +  ++L   S  S L LG Q+H L+ K 
Sbjct: 629 FIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKY 688

Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRL 286
            +  D      L++ Y KC  +ED   +F  + +R+D V+WN+MISGY   G   KA+ L
Sbjct: 689 SVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDL 748

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
              M   G K D  TF  +L AC     ++ G++     V    + +     + +VD+  
Sbjct: 749 VWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRA-CLESDVVVGSALVDMYA 807

Query: 347 RAGKLVEAVDLIKKMPFK 364
           + GK+  A    + MP +
Sbjct: 808 KCGKIDYASRFFELMPVR 825



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 138/271 (50%), Gaps = 12/271 (4%)

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
           ++L+K      V     +I+ Y++ G +  A KLFDEMP KNLV+W+ +I+GY +N   +
Sbjct: 164 LQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPD 223

Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS--LQLGKQVHQLVFKSPLCKDTTALTP 238
           +   L + +I  G+ PN  ++ S L  C    S  ++LG Q+H  + K P   D      
Sbjct: 224 EACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNV 283

Query: 239 LISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--- 294
           L+SMY  C G ++DA ++F EI+ ++ VTWN++IS Y + G    A +LF  M+ EG   
Sbjct: 284 LMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVEL 343

Query: 295 -MKPDSITFVALLLACNHAGLVDLGIQYFDSM---VNDYGIAAKPDHYTCMVDLLGRAGK 350
            ++P+  T  +L+ A     L D G+   + M   +   G        + +V+   R G 
Sbjct: 344 NLRPNEYTLCSLVTAA--CSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGL 401

Query: 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
           +  A  + K+M  +    + G ++   R H+
Sbjct: 402 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQ 432



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 164/341 (48%), Gaps = 18/341 (5%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLD 118
           F+++  ++  + N ++ G  ++    +A  +F  M    E NS S   ++S + E   L 
Sbjct: 409 FKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLK 468

Query: 119 KA--------VELFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
           +           LF+   V + ++   A+++ Y K   +D A  +F  MP+K+ V+WN+M
Sbjct: 469 EGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSM 528

Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
           I+G   N   E+ +     M   G+ P+  S+ S L  CS L  L LG+Q+H   FK  L
Sbjct: 529 ISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGL 588

Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE-KALRLFD 288
             D +    L+++Y +   + +  K+F ++   D V+WN+ I   A++     +AL+ F 
Sbjct: 589 DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFL 648

Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
           +M   G +P+ +TF+ +L A +   ++ LG Q   +++  Y +A        ++   G+ 
Sbjct: 649 EMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHALILKYSVADDNAIENALLAFYGKC 707

Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACR----VHKRLDL 385
            ++ +   +  +M  +     + +++S       +HK +DL
Sbjct: 708 EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDL 748



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 173/369 (46%), Gaps = 43/369 (11%)

Query: 18  KQRGKLKDAQELFDKIPQP----DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASW 73
           K    L DA  L  ++ +     DV   N +++ I +   ++V+A   F  +P K+  SW
Sbjct: 151 KTSSSLYDANHLHLQLYKTGFTDDVFFCNTLIN-IYVRIGNLVSARKLFDEMPQKNLVSW 209

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECG----QLDKAVELF- 124
           + +ISG+ Q +   +A  LF  +       N  +  + +    +CG    +L   +  F 
Sbjct: 210 SCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFI 269

Query: 125 -KVAPVKSVVAWTAMISGYMKF-GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
            K+  V  ++    ++S Y    G +D A ++FDE+  +N VTWN++I+ Y     A   
Sbjct: 270 CKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSA 329

Query: 183 LKLLRMM----IGLGIRPNASSLSSVLLGCSHLS--SLQLGKQVHQLVFKSPLCKDTTAL 236
            KL  +M    + L +RPN  +L S++     L+   L L +Q+   + KS   +D    
Sbjct: 330 FKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVG 389

Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
           + L++ + + G ++ A  +F ++  ++ VT N ++ G A+  +GE+A ++F +MKD  ++
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VE 448

Query: 297 PDSITFVALLLACN---------------HA-----GLVDLGIQYFDSMVNDYGIAAKPD 336
            +S + V LL                   HA     GLVD  I   +++VN YG     D
Sbjct: 449 INSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAID 508

Query: 337 HYTCMVDLL 345
           +   +  L+
Sbjct: 509 NACSVFQLM 517


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/639 (33%), Positives = 337/639 (52%), Gaps = 79/639 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++A +AK  G+++DA  +F+ +   D VS+N +LS ++ N    D +  F   Q    
Sbjct: 287 NALIAMYAKC-GRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ 345

Query: 68  K-DTASWNTMISGFVQKKNMAKARDL---------------------------------- 92
           K D  S   +I+   +  N+ K +++                                  
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGH 405

Query: 93  -FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-------------------- 131
            F  M EK+ +SW+ +I+GY +     +A+ LF+   VK                     
Sbjct: 406 AFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKS 465

Query: 132 ------------------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                             ++   A+++ Y + G +D A + F+ + +K++V+W +MI   
Sbjct: 466 RNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCC 525

Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
           V N    + L+L   +    I+P++ ++ S L   ++LSSL+ GK++H  + +     + 
Sbjct: 526 VHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEG 585

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
              + L+ MY  CG +E++ K+F  ++++D++ W +MI+    HG G KA+ LF KM D+
Sbjct: 586 PIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQ 645

Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
            + PD ITF+ALL AC+H+GL+  G ++F+ M   Y +   P+HY CMVDLL R+  L E
Sbjct: 646 NVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEE 705

Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413
           A   ++ MP KP   I+  LL AC +H   +L E AA  L   +  N +G Y  ++NI+A
Sbjct: 706 AYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTEN-SGKYALISNIFA 764

Query: 414 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 473
           A  +W+DV  +RL MK N + K PG SWIEV   +H F + D+ HP+   I+ KL +  K
Sbjct: 765 ADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTK 824

Query: 474 RM-KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532
            + K  GY+   +F  H V EE K Q+L  HSE+LA+ +GL+  P GT IR+ KNLR+C 
Sbjct: 825 LLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICD 884

Query: 533 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           DCH   K  S + +R ++VRD  RFHHF+ G CSCGD+W
Sbjct: 885 DCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 166/353 (47%), Gaps = 48/353 (13%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISG-----YIECGQ-L 117
           +DT SWN++IS  V + N  +A  LF  M E     N+ ++ A + G     +++ G  +
Sbjct: 211 EDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI 270

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
             AV   K      V    A+I+ Y K G+++ A ++F+ M  ++ V+WN +++G V+N 
Sbjct: 271 HGAV--LKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNE 328

Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
              D L   R M   G +P+  S+ +++       +L  GK+VH    ++ L  +     
Sbjct: 329 LYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGN 388

Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
            L+ MY KC  ++     F  +  KD+++W  +I+GYAQ+    +A+ LF K++ +GM  
Sbjct: 389 TLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDV 448

Query: 298 DSITFVALLLACN-----------HA-----GLVDLGIQYFDSMVNDYGIAAKPDH---- 337
           D +   ++L AC+           H       L D+ +Q  +++VN YG     D+    
Sbjct: 449 DPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ--NAIVNVYGEVGHIDYARRA 506

Query: 338 -----------YTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSA 376
                      +T M+      G  VEA++L   +K+   +P      + LSA
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSA 559



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 189/433 (43%), Gaps = 51/433 (11%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A   F  +  +   SWN ++  FV      +A +L+  M       ++ ++ +++     
Sbjct: 98  AVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGA 157

Query: 114 CGQLDKAVELFKVAPVKS-----VVAWTAMISGYMKFGKVDLAEKLFDE--MPTKNLVTW 166
            G+     E+  VA VK      V    A+I+ Y K G +  A  LFD   M  ++ V+W
Sbjct: 158 LGESRLGAEIHGVA-VKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSW 216

Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
           N++I+ +V      + L L R M  +G+  N  +  + L G    S ++LG  +H  V K
Sbjct: 217 NSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLK 276

Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
           S    D      LI+MY KCG +EDA ++F  +  +D V+WN ++SG  Q+     AL  
Sbjct: 277 SNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNY 336

Query: 287 FDKMKDEGMKPDSITFVALLLACNHAGL---------------VDLGIQYFDSMVNDY-- 329
           F  M++ G KPD ++ + L+ A   +G                +D  +Q  +++V+ Y  
Sbjct: 337 FRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAK 396

Query: 330 -------GIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKMPFKP---QPAIFGTL 373
                  G A +  H      +T ++    +    +EA++L +K+  K     P + G++
Sbjct: 397 CCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSV 456

Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
           L AC   K  +        +F  + A+       + N+Y  +   D   R   S++  ++
Sbjct: 457 LRACSGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGEVGHIDYARRAFESIRSKDI 515

Query: 434 VKMPGYSWIEVGT 446
           V     SW  + T
Sbjct: 516 V-----SWTSMIT 523



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 15/234 (6%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
           T ++  Y K G +  A K+FDEM  + + +WNA++  +V +    + ++L + M  LG+ 
Sbjct: 83  TKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVA 142

Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
            +A +  SVL  C  L   +LG ++H +  K    +       LI+MY KCGDL  A  L
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 256 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
           F  + ++++D V+WN++IS +   G   +AL LF +M++ G+  ++ TFVA L       
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKM 361
            V LG+         +G   K +H+        ++ +  + G++ +A  + + M
Sbjct: 263 FVKLGMGI-------HGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESM 309



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 15/150 (10%)

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
           C    +L  G+Q+H L+ KS L       T L+ MY KCG L DA K+F E+  + + +W
Sbjct: 56  CVAAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSW 113

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
           NA++  +   GK  +A+ L+  M+  G+  D+ TF ++L AC   G   LG +       
Sbjct: 114 NALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEI------ 167

Query: 328 DYGIAAKPDH----YTC--MVDLLGRAGKL 351
            +G+A K  +    + C  ++ + G+ G L
Sbjct: 168 -HGVAVKCGYGEFVFVCNALIAMYGKCGDL 196


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 286/471 (60%), Gaps = 5/471 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           + MI  Y++CG +  A ++F   P + V++WT +I+ Y + G ++ A  LF+ +PTK++V
Sbjct: 189 NTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMV 248

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
            W AM+ G+ +N+  ++ L+    M   GIR +  +++  +  C+ L + +   +  Q+ 
Sbjct: 249 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 308

Query: 225 FKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
            KS        +  + LI MY KCG++E+A  +F+ +  K+V ++++MI G A HG+ ++
Sbjct: 309 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQE 368

Query: 283 ALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
           AL LF  M  +  +KP+++TFV  L AC+H+GLVD G Q F SM   +G+    DHYTCM
Sbjct: 369 ALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCM 428

Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
           VDLLGRAG+L EA++LIK M  +P   ++G LL ACR+H   D+AE AA +LF L P + 
Sbjct: 429 VDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEP-DI 487

Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-IEVGTVVHEFRSGDRVHPE 460
            G Y+ L+N+Y++   W  V  +R  +KE  + K P  SW ++    +H+F  G+  HP 
Sbjct: 488 IGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPM 547

Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
              I +KL+EL +R+   GY PDL    + V +  K  +L+ H+EKLA+AF L+      
Sbjct: 548 SKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDY 607

Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
            I++ KNLR+C DCH   +  S +  R II+RD  RFHHF+ G CSCGD+W
Sbjct: 608 TIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 57/345 (16%)

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFG-K 147
           F  +  +  +  S++IS   +C  L++  ++     +    +S    T +I    K G  
Sbjct: 39  FSEISHQRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVP 98

Query: 148 VD-LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206
           +D    ++ + +  +N   W A+I GY      ++ + +   M    I P + + S++L 
Sbjct: 99  MDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 158

Query: 207 GCSHLSSLQLGKQVHQLVFK---------------------SPLC----------KDTTA 235
            C  +  L LG+Q H   F+                     S +C          +D  +
Sbjct: 159 ACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVIS 218

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
            T LI+ Y + G++E A  LF  +  KD+V W AM++G+AQ+ K ++AL  FD+M+  G+
Sbjct: 219 WTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 278

Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHY---TCMVDLLGR 347
           + D +T    + AC   G      +Y D  V    IA K      DH    + ++D+  +
Sbjct: 279 RADEVTVAGYISACAQLG----ASKYADRAVQ---IAQKSGYSPSDHVVIGSALIDMYSK 331

Query: 348 AGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLAEF 388
            G + EAV++   M     F     I G L +  R  + LDL  +
Sbjct: 332 CGNVEEAVNVFVSMNNKNVFSYSSMILG-LATHGRAQEALDLFHY 375


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/582 (37%), Positives = 336/582 (57%), Gaps = 32/582 (5%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           +AG A   G+    + L  K+PQ DV+  +++   + L  D++V A   F+ +  ++  S
Sbjct: 144 VAGLAD--GRAIHQRILASKVPQDDVLQDSLL--NMYLKCDEMVEARKVFEGMKARNVRS 199

Query: 73  WNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +  MIS +VQ    A+A +LF  M      E N+ +++ ++      G L+K  ++ +  
Sbjct: 200 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 259

Query: 128 PVK----SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
             +    +VV   A+++ Y K G    A K+FD M  +N+++W +MIA Y ++   ++ L
Sbjct: 260 ASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 319

Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
            L + M    + P+  S SS L  C+ L +L  G+++H  V ++ L       T L+SMY
Sbjct: 320 NLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQME-TSLLSMY 375

Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
            +CG L+DA ++F  ++ +D  + NAMI+ + QHG+ ++ALR++ KM+ EG+  D ITFV
Sbjct: 376 ARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFV 435

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           ++L+AC+H  LV     +  S+V D+G+    +HY CMVD+LGR+G+L +A +L++ MP+
Sbjct: 436 SVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPY 495

Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
           +     + TLLS C+ H  LD  E AA  +F L PA     YV L+N+YAA K++DD  R
Sbjct: 496 QADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLP-YVFLSNMYAAAKRFDDARR 554

Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE-------LVSIHEKLKELEKRMK 476
           +R  M+E  V +    S+IE+   +H F SG R   +       +  +   L EL + MK
Sbjct: 555 VRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLVELLEPMK 614

Query: 477 LAGYVPDL-EFALHAVG---EEVKEQLLLFHSEKLAIAFGLI--KVPLGT-PIRVFKNLR 529
            AGYVPD  E  L   G   EE K++ L FHSE+LAIA+GLI  K P  + P+RV  + R
Sbjct: 615 QAGYVPDTREVYLEQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHR 674

Query: 530 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           VC  CH A K +S I ++ I VRD +RFHHF+ G CSCGD+W
Sbjct: 675 VCSGCHSAIKLLSDITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 40/396 (10%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVAPVKSVVA 134
           MI+  V++    +A +L+  M E+  V+   +++  +  C +L    E  ++     +  
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 135 W-------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
           +       TA++  Y K G +D A+++F+ M  K+L  W+++IA Y      E  + L R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
            MI  G+ PN  + +  L GC+ ++ L  G+ +HQ +  S + +D      L++MY KC 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 306
           ++ +A K+F  ++ ++V ++ AMIS Y Q G+  +AL LF +M K E ++P++ TF  +L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 307 LACNHAGLVDLGIQY--------FDS-------MVNDYGIAAKPDH-------------- 337
            A    G ++ G +         FD+       +V  YG    P                
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 338 -YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
            +T M+    + G   EA++L K+M  +P    F + L+AC +   LD        +   
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEA 360

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           N A+       L ++YA     DD  R+   MK  +
Sbjct: 361 NLASPQ-METSLLSMYARCGSLDDARRVFNRMKTRD 395



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 14/312 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQL 117
           F+ + IKD  +W+++I+ + +      A  L+  M     E N V+++  + G      L
Sbjct: 88  FEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGL 147

Query: 118 DKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
                + +      V    V   ++++ Y+K  ++  A K+F+ M  +N+ ++ AMI+ Y
Sbjct: 148 ADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAY 207

Query: 174 VENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232
           V+     + L+L  RM     I PNA + +++L     L +L+ G++VH+ +       +
Sbjct: 208 VQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTN 267

Query: 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292
                 L++MY KCG   +A K+F  +  ++V++W +MI+ YAQHG  ++AL LF +M  
Sbjct: 268 VVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD- 326

Query: 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352
             ++P  ++F + L AC   G +D G +    +V      A P   T ++ +  R G L 
Sbjct: 327 --VEPSGVSFSSALNACALLGALDEGREIHHRVVE--ANLASPQMETSLLSMYARCGSLD 382

Query: 353 EAVDLIKKMPFK 364
           +A  +  +M  +
Sbjct: 383 DARRVFNRMKTR 394


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/493 (37%), Positives = 302/493 (61%), Gaps = 36/493 (7%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
             V+W ++L G AK  GK+ +A+ELFD++P  +VVS+N M++  + +   V  A   F++
Sbjct: 234 NAVSWVTMLCGLAKY-GKMAEARELFDRMPSKNVVSWNAMIATYVQDLQ-VDEAVKLFKK 291

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------------------------ 100
           +P KD+ SW T+I+G+++   + +AR ++  MP K+                        
Sbjct: 292 MPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMF 351

Query: 101 -------SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
                   V W++MI+GY   G++D+A+ LF+  P+K+ V+W  MISGY + G++D A +
Sbjct: 352 SRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATE 411

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F  M  KN+V+WN++IAG+++N+   D LK L MM   G +P+ S+ +  L  C++L++
Sbjct: 412 IFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAA 471

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
           LQ+G Q+H+ + KS    D      LI+MY KCG ++ A ++F +I+  D+++WN++ISG
Sbjct: 472 LQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISG 531

Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
           YA +G   KA + F++M  E + PD +TF+ +L AC+HAGL + G+  F  M+ D+ I  
Sbjct: 532 YALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEP 591

Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
             +HY+C+VDLLGR G+L EA + ++ M  K    ++G+LL ACRVHK L+L  FAA  L
Sbjct: 592 LAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERL 651

Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
           F L P NA+  Y+ L+N++A   +W++V R+R+ M+     K PG SWIEV   +  F S
Sbjct: 652 FELEPHNASN-YITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQHFLS 710

Query: 454 GD--RVHPELVSI 464
            D  ++ P+ + I
Sbjct: 711 HDPAKLRPKNIQI 723



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 220/415 (53%), Gaps = 60/415 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-------- 52
           M+++  V+WN+++AG+      +++A ELFD +P+ D  S+ +M++C             
Sbjct: 74  MSLRNLVSWNTMIAGYL-HNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKAREL 132

Query: 53  -------------DDVVAAF----------DFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
                        + ++A +            F+++P KD  S+N+M++G+ Q   M  A
Sbjct: 133 LELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLA 192

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVD 149
              F +M E+N VSW+ M++GY++ G L  A +LF+  P  + V+W  M+ G  K+GK+ 
Sbjct: 193 LQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMA 252

Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS--SVLLG 207
            A +LFD MP+KN+V+WNAMIA YV++   ++ +KL + M      P+  S+S  +++ G
Sbjct: 253 EARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM------PHKDSVSWTTIING 306

Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
              +  L   +QV+    + P CKD TA T L+S   + G +++A ++F  I   DVV W
Sbjct: 307 YIRVGKLDEARQVYN---QMP-CKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCW 362

Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-- 325
           N+MI+GY++ G+ ++AL LF +M  +    +S+++  ++     AG +D   + F +M  
Sbjct: 363 NSMIAGYSRSGRMDEALNLFRQMPIK----NSVSWNTMISGYAQAGQMDRATEIFQAMRE 418

Query: 326 ---VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
              V+   + A        +D L       +++ ++ K   KP  + F   LSAC
Sbjct: 419 KNIVSWNSLIAGFLQNNLYLDAL-------KSLVMMGKEGKKPDQSTFACTLSAC 466



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 222/404 (54%), Gaps = 23/404 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V +NS+++  AK   +++DA++LFD++   ++VS+N M++  L N + V  A +
Sbjct: 43  MTHKNLVTYNSMISVLAKN-ARIRDARQLFDQMSLRNLVSWNTMIAGYLHN-NMVEEASE 100

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDK 119
            F  +P +D  SW  MI+ + +K  + KAR+L   +P+K ++  W+AMI+GY + GQ + 
Sbjct: 101 LFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFND 160

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
           A ++F+  P K +V++ +M++GY + GK+ LA + F+ M  +N+V+WN M+AGYV++   
Sbjct: 161 AKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDL 220

Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
               +L   +      PNA S  ++L G +    +   ++    +F     K+  +   +
Sbjct: 221 SSAWQLFEKIPN----PNAVSWVTMLCGLAKYGKMAEARE----LFDRMPSKNVVSWNAM 272

Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
           I+ Y +   +++A KLF ++  KD V+W  +I+GY + GK ++A +++++M  +    D 
Sbjct: 273 IATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCK----DI 328

Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
               AL+      G +D   Q F S +  + +      +  M+    R+G++ EA++L +
Sbjct: 329 TAQTALMSGLIQNGRIDEADQMF-SRIGAHDVVC----WNSMIAGYSRSGRMDEALNLFR 383

Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANA 401
           +MP K   + + T++S      ++D A   F AM   N+   N+
Sbjct: 384 QMPIKNSVS-WNTMISGYAQAGQMDRATEIFQAMREKNIVSWNS 426



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 219/415 (52%), Gaps = 24/415 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK+++A  +F  +   ++V+YN M+S +  N+  +  A   F ++ +++  SWNTMI+G+
Sbjct: 31  GKVEEAIRIFFNMTHKNLVTYNSMISVLAKNAR-IRDARQLFDQMSLRNLVSWNTMIAGY 89

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMI 139
           +    + +A +LF  MPE+++ SW+ MI+ Y   G+L+KA EL ++ P K     W AMI
Sbjct: 90  LHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMI 149

Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
           +GY K G+ + A+K+F++MP K+LV++N+M+AGY +N      L+    M    +     
Sbjct: 150 AGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV----- 204

Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
            +S  L+   ++ S  L     QL  K P     + +T L  +  K G + +A +LF  +
Sbjct: 205 -VSWNLMVAGYVKSGDLSS-AWQLFEKIPNPNAVSWVTMLCGL-AKYGKMAEARELFDRM 261

Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
             K+VV+WNAMI+ Y Q  + ++A++LF KM  +    DS+++  ++      G +D   
Sbjct: 262 PSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK----DSVSWTTIINGYIRVGKLDEAR 317

Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379
           Q ++ M     I A+    T ++  L + G++ EA  +  ++        + ++++    
Sbjct: 318 QVYNQMPCK-DITAQ----TALMSGLIQNGRIDEADQMFSRIG-AHDVVCWNSMIAGYSR 371

Query: 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
             R+D     A+NLF   P   +  +  + + YA   + D    I  +M+E N+V
Sbjct: 372 SGRMD----EALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIV 422



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 132/257 (51%), Gaps = 23/257 (8%)

Query: 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203
           K GKV+ A ++F  M  KNLVT+N+MI+   +N+   D  +L   M    +R N  S ++
Sbjct: 29  KLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM---SLR-NLVSWNT 84

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK- 262
           ++ G  H + ++   ++  ++ +    +D  +   +I+ Y + G LE A +L   +  K 
Sbjct: 85  MIAGYLHNNMVEEASELFDVMPE----RDNFSWALMITCYTRKGKLEKARELLELVPDKL 140

Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
           D   WNAMI+GYA+ G+   A ++F++M  +    D +++ ++L      G + L +Q+F
Sbjct: 141 DTACWNAMIAGYAKKGQFNDAKKVFEQMPAK----DLVSYNSMLAGYTQNGKMHLALQFF 196

Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
           +SM     ++     +  MV    ++G L  A  L +K+P  P    + T+L  C + K 
Sbjct: 197 ESMTERNVVS-----WNLMVAGYVKSGDLSSAWQLFEKIP-NPNAVSWVTML--CGLAKY 248

Query: 383 LDLAEFAAMNLFNLNPA 399
             +AE  A  LF+  P+
Sbjct: 249 GKMAE--ARELFDRMPS 263



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 138/330 (41%), Gaps = 50/330 (15%)

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
           K G +E+A ++F  +  K++VT+N+MIS  A++ +   A +LFD+M    +    +++  
Sbjct: 29  KLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNL----VSWNT 84

Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
           ++    H  +V+   + FD M      +     +  M+    R GKL +A +L++ +P K
Sbjct: 85  MIAGYLHNNMVEEASELFDVMPERDNFS-----WALMITCYTRKGKLEKARELLELVPDK 139

Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
              A +  +++      + + A+     +F   PA     Y  +   Y    K     + 
Sbjct: 140 LDTACWNAMIAGYAKKGQFNDAK----KVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQF 195

Query: 425 RLSMKENNVVK----MPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKL----------- 468
             SM E NVV     + GY  ++ G +   ++  +++ +P  VS    L           
Sbjct: 196 FESMTERNVVSWNLMVAGY--VKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAE 253

Query: 469 -KELEKRMK----------LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA---IAFGLI 514
            +EL  RM           +A YV DL+     V E VK    + H + ++   I  G I
Sbjct: 254 ARELFDRMPSKNVVSWNAMIATYVQDLQ-----VDEAVKLFKKMPHKDSVSWTTIINGYI 308

Query: 515 KVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
           +V      R   N   C D    T  +S +
Sbjct: 309 RVGKLDEARQVYNQMPCKDITAQTALMSGL 338


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 302/479 (63%), Gaps = 6/479 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+++ G+A Q G++  A ELFD++P+ ++VS+N M+   L+    +  A +
Sbjct: 135 MPERNVVSWNTMIDGYA-QSGRIDKALELFDEMPERNIVSWNSMVKA-LVQRGRIDEAMN 192

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+R+P +D  SW  M+ G  +   + +AR LF  MPE+N +SW+AMI+GY +  ++D+A
Sbjct: 193 LFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEA 252

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
            +LF+V P +   +W  MI+G+++  +++ A  LFD MP KN+++W  MI GYVEN   E
Sbjct: 253 DQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENE 312

Query: 181 DGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
           + L +   M+  G ++PN  +  S+L  CS L+ L  G+Q+HQL+ KS   K+    + L
Sbjct: 313 EALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSAL 372

Query: 240 ISMYCKCGDLEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
           ++MY K G+L  A K+F    + ++D+++WN+MI+ YA HG G++A+ ++++M+  G KP
Sbjct: 373 LNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKP 432

Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
            ++T++ LL AC+HAGLV+ G+++F  +V D  +  + +HYTC+VDL GRAG+L +  + 
Sbjct: 433 SAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNF 492

Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417
           I     +   + +G +LSAC VH  + +A+     +     ++ AG YV ++NIYAA  K
Sbjct: 493 INCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETG-SDDAGTYVLMSNIYAANGK 551

Query: 418 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
            ++ A +R+ MKE  + K PG SW++VG   H F  GD+ HP+  ++   L +L  +M+
Sbjct: 552 REEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMR 610



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 213/412 (51%), Gaps = 80/412 (19%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +  V W  V+ G+ K  G +++A+ELFD++  + +VV++  M+S  L +    +A    F
Sbjct: 75  RDVVTWTHVITGYIKL-GDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEM-LF 132

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           Q +P ++  SWNTMI G+ Q   + KA +LF  MPE+N VSW++M+   ++ G++D+A+ 
Sbjct: 133 QEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMN 192

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
           LF+  P + VV+WTAM+ G  K GKVD A +LFD MP +N+++WNAMI GY +N+  ++ 
Sbjct: 193 LFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEA 252

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
            +L ++M      P                                  +D  +   +I+ 
Sbjct: 253 DQLFQVM------PE---------------------------------RDFASWNTMITG 273

Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSIT 301
           + +  ++  AC LF  +  K+V++W  MI+GY ++ + E+AL +F KM +D  +KP+  T
Sbjct: 274 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGT 333

Query: 302 FVALLLACNH-AGLVDLGIQYFD---------------SMVNDYG-----IAAKP---DH 337
           +V++L AC+  AGLV+ G Q                  +++N Y      IAA+    + 
Sbjct: 334 YVSILSACSDLAGLVE-GQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNG 392

Query: 338 YTCMVDLL------------GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
             C  DL+            G   + +E  + ++K  FKP    +  LL AC
Sbjct: 393 LVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFAC 444



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 20/260 (7%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVT 165
           +I    + G++ +A +LF   P + VV WT +I+GY+K G +  A +LFD + + KN+VT
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111

Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
           W AM++GY+ +      L +  M+       N  S ++++ G  +  S ++ K +   +F
Sbjct: 112 WTAMVSGYLRSK----QLSIAEMLFQEMPERNVVSWNTMIDG--YAQSGRIDKALE--LF 163

Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
                ++  +   ++    + G +++A  LF  + R+DVV+W AM+ G A++GK ++A R
Sbjct: 164 DEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARR 223

Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDL 344
           LFD M +  +    I++ A++        +D   Q F  M   D+        +  M+  
Sbjct: 224 LFDCMPERNI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFA------SWNTMITG 273

Query: 345 LGRAGKLVEAVDLIKKMPFK 364
             R  ++ +A  L  +MP K
Sbjct: 274 FIRNREMNKACGLFDRMPEK 293



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 13/196 (6%)

Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
           LI   CK G + +A KLF  +  +DVVTW  +I+GY + G   +A  LFD++     + +
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDS---RKN 108

Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358
            +T+ A++     +  + +    F  M     ++     +  M+D   ++G++ +A++L 
Sbjct: 109 VVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVS-----WNTMIDGYAQSGRIDKALELF 163

Query: 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418
            +MP +     + +++ A     R+D     AMNLF   P      +  + +  A   K 
Sbjct: 164 DEMPER-NIVSWNSMVKALVQRGRID----EAMNLFERMPRRDVVSWTAMVDGLAKNGKV 218

Query: 419 DDVARIRLSMKENNVV 434
           D+  R+   M E N++
Sbjct: 219 DEARRLFDCMPERNII 234


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/439 (45%), Positives = 281/439 (64%), Gaps = 5/439 (1%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-- 193
           T +I  Y K G V  AE +F  MP +N+V+W AMI  Y +N    D + L + M+     
Sbjct: 224 TTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDED 283

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
           + PN+ ++  +L   + +++L  GK +H  + +       + L  L++MY KCG LE   
Sbjct: 284 LVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGR 343

Query: 254 KLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
            +F  I  RKDVV+WN +ISGY  HG G +A+++F+ M   G+ P+ ITF+++L AC+HA
Sbjct: 344 HIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHA 403

Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
           GLVD G + F+SMV DY +  + +HY CMVDLLGRAG L EAV+LI+ M  +P P ++G+
Sbjct: 404 GLVDEGKRLFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGS 462

Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
           LL ACR+H+ ++ AE A   LF+L P NA G YV LA+IYA  K   +V  ++  ++E+ 
Sbjct: 463 LLGACRIHRHVEYAEMACSQLFDLEPRNA-GNYVLLADIYARAKLHSEVGVLKDLLEEHA 521

Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
           + K+PG SWIEV   +H F S D  +P++  +   + E   +MK  GYVPD    L+ + 
Sbjct: 522 LEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIE 581

Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
           EE KE++LL HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS   +REIIVR
Sbjct: 582 EEEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVR 641

Query: 553 DTTRFHHFKDGTCSCGDYW 571
           D  RFHHF+DG CSCGDYW
Sbjct: 642 DVNRFHHFRDGICSCGDYW 660



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178
           KA  +F+  P  S    T +I  Y   G++  A ++FDE P K++  WNA++        
Sbjct: 105 KADPVFRSDPFLS----TRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADH 160

Query: 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGC-----SHLSSLQLGKQVHQLVFKSPLCKDT 233
            E+ L  L  M  L +  ++ S +  L  C     SH+ +  L +++H    +      T
Sbjct: 161 GEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHT 220

Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--K 291
              T LI  Y K G +  A  +F  +  ++VV+W AMI  YA++ +   A+ LF +M   
Sbjct: 221 HVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVAS 280

Query: 292 DEGMKPDSITFVALLLACNHAGLVDLG 318
           DE + P+S+T V +L A   AG+  LG
Sbjct: 281 DEDLVPNSVTIVCILHA--FAGVNALG 305



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 138/358 (38%), Gaps = 90/358 (25%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNI------------------------------------M 44
           G+L  A+++FD+ P   +  +N                                     +
Sbjct: 128 GELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLADMGRLRVPVDSYSYAHGL 187

Query: 45  LSCILLNSDDVVAA-------FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
            +CI  ++  V A+           +R     T    T+I  + +   ++ A  +F  MP
Sbjct: 188 KACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVSYAESVFATMP 247

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFK--VAPVKSVV---------------------- 133
           E+N VSW+AMI  Y +  +   A+ LF+  VA  + +V                      
Sbjct: 248 ERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQG 307

Query: 134 -----------------AWTAMISGYMKFGKVDLAEKLFDEM-PTKNLVTWNAMIAGYVE 175
                               A+++ YMK G ++    +FD +   K++V+WN +I+GY  
Sbjct: 308 KLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGM 367

Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
           + +  + +++   M  +G+ PN  +  SVL  CSH   +  GK++ + +    +      
Sbjct: 368 HGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEH 427

Query: 236 LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA----LRLFD 288
              ++ +  + G L++A +L   +  R     W +++     H   E A     +LFD
Sbjct: 428 YACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLFD 485


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/476 (38%), Positives = 292/476 (61%), Gaps = 3/476 (0%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
           +K+    +++IS Y+ CG +  A ++F    VK V++WT+++  Y +   +  AE++F  
Sbjct: 190 DKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFAL 249

Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
            P K++V W AM+ GY +N+     L+    M   G+  +  SL+  +  C+ L +++  
Sbjct: 250 CPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRA 309

Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
             V ++  ++ L ++    + L+ MY KCG +++A K+F  +  K+V T+++MI G A H
Sbjct: 310 AWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASH 369

Query: 278 GKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           G+    + LF+ M +   ++P+ +TF+ +L AC+HAG+V  G  YF  M + YGI    D
Sbjct: 370 GRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSAD 429

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
           HY CMVDLL R+G + EA+DL+K M  +P   ++G LL ACR+H   ++A+ AA +LF L
Sbjct: 430 HYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRL 489

Query: 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-VGTVVHEFRSGD 455
            P    G YV L+N  A+  +WD+V+++R  M+   + K P  SW E     VH+F +GD
Sbjct: 490 EP-EGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGD 548

Query: 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 515
             HP +  I ++L EL +++ LAGYVP L   ++ V EE KE+LL+ HSEKLA++FGL+ 
Sbjct: 549 NTHPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLT 608

Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           +   + IR+ KNLR+C DCH   + +S +E  EI+VRD  RFHHF+DG CSCG +W
Sbjct: 609 LESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 117/273 (42%), Gaps = 44/273 (16%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           DV AA   F  + +KD  SW +++  + + ++M  A ++F   P K+ V+W+AM++GY +
Sbjct: 208 DVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQ 267

Query: 114 CGQLDKAVELFKVAPV---------------------------------------KSVVA 134
                KA+E F+   V                                       ++VV 
Sbjct: 268 NAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVV 327

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG- 193
            + ++  Y K G +D A K+F+ M  KN+ T+++MI G   +  A D + L   M+    
Sbjct: 328 GSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRAD 387

Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
           + PN  +   VL  CSH   ++ G+    Q+  +  +         ++ +  + G + +A
Sbjct: 388 VEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEA 447

Query: 253 CKLF--LEIQRKDVVTWNAMISGYAQHGKGEKA 283
             L   + ++    V W A++     HG  E A
Sbjct: 448 LDLVKSMTVEPHGGV-WGALLGACRIHGNTEVA 479


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 293/470 (62%), Gaps = 4/470 (0%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
           ++M+  YI+ G+++ A  +F   P + VV+W +MI+GY+K G+++LA+K+F+ M  K++V
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVV 207

Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
           TW +MI+ YV+N      L L R M+ LG+RP+  ++ SVL   + L  ++ GK +H  V
Sbjct: 208 TWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYV 267

Query: 225 FKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEK 282
             + +   +  + + LI MY KCG +E+A  +F  I  R+++  WN+MISG A HG   +
Sbjct: 268 SMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLARE 327

Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
           AL +F +M+   ++P+ ITF+ LL  C+H GLV+ G  YF+SM   Y I  +  HY CM+
Sbjct: 328 ALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMI 387

Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
           DL GRAG+L +A+ +I+ MPF+     +  +LSA   H  +++ + AA+    L P +++
Sbjct: 388 DLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSS 447

Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
             YV L+NIYA   +WDDVA+IRL M++  V K+ G S + V   VHEF  G  +     
Sbjct: 448 S-YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYS 506

Query: 463 -SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 521
             +  K+ E+  R+KL GY PDL   L  + +E KE LL  HSEK+AIAFGLI +    P
Sbjct: 507 GQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAP 566

Query: 522 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           I + KNLRVC DCH   K +S +  R+II+RD  RFHHF++G CSC +YW
Sbjct: 567 IHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 144/307 (46%), Gaps = 34/307 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+++ A+ +FD++P  DVVS+N M++   L + ++  A   F+ +  KD  +W +MIS +
Sbjct: 158 GEIELARRVFDRMPNRDVVSWNSMIAG-YLKAGEIELAKKVFETMSDKDVVTWTSMISAY 216

Query: 81  VQKKNMAKARDLFLAM---------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           VQ +   KA DLF  M         P   SV  +    G++E G+   A        + S
Sbjct: 217 VQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSS 276

Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
               +A+I  Y K G ++ A  +F  +   +N+  WN+MI+G   +  A + L +   M 
Sbjct: 277 GFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEME 336

Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMY 243
            + I PN  +   +L  CSH   ++ G    Q  F+S    +   + P       +I ++
Sbjct: 337 RMDIEPNEITFLGLLSTCSHGGLVEEG----QFYFES--MHEKYKIVPRIQHYGCMIDLF 390

Query: 244 CKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE----KALRLFDKMKDEGMKPD 298
            + G LEDA  +   +    D++ W A++S   +HG  E     ALR  +   D     D
Sbjct: 391 GRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPD-----D 445

Query: 299 SITFVAL 305
           S ++V L
Sbjct: 446 SSSYVLL 452



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 37/289 (12%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNAS-SLSS 203
           G +D A  +F  +   N   + A+I G+ + S   + L L  RM+  L        S+ S
Sbjct: 55  GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
           VL  C  L +   G+QVH  V K+ L  D      ++ MY   G++E A ++F  +  +D
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174

Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDE------------------------------ 293
           VV+WN+MI+GY + G+ E A ++F+ M D+                              
Sbjct: 175 VVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLS 234

Query: 294 -GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKL 351
            G++PD    V++L A    G V+ G ++  + V+   I        + ++D+  + G +
Sbjct: 235 LGLRPDGPAIVSVLSAIADLGFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYI 293

Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 398
             A  + + +  +     + +++S   +H   R  L  F  M   ++ P
Sbjct: 294 ENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 342


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/617 (34%), Positives = 328/617 (53%), Gaps = 48/617 (7%)

Query: 2   NVKTTVNWNSVLAGFAKQ----------RGKLKDAQEL--------------FDKIPQPD 37
           N K  V+WN+++ GF+ +          R  L  ++++              FD+   P 
Sbjct: 338 NNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPS 397

Query: 38  V-----------VSYNIMLSCILLNSDDVVAAFDFFQR----LPIKDTASWNTMISGFVQ 82
           +             Y+ +L+   + S     +  + QR    +  K   SWN +I G+ Q
Sbjct: 398 LKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQ 457

Query: 83  KKNMAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKVAP--VKSVVA 134
             +   + D  L M      P+  +V         ++  +L K V  F +     + +  
Sbjct: 458 SSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 517

Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
           + +++S Y+  G++   + LFD M   +LV+WN +I G+++N + E  L L R M+  GI
Sbjct: 518 YLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGI 577

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
           +P   S+ +V   CS L SL+LG++ H    K  L  +      +I MY K G +  + K
Sbjct: 578 QPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSK 637

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           +F  ++ K   +WNAMI GY  HG+ ++A++LF++M+  G  PD +TF+ +L ACNH+GL
Sbjct: 638 VFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGL 697

Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
           +  G++Y D M + +G+     HY C++D+LGRAG+L  A+ +  +M  +P   I+ +LL
Sbjct: 698 LHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLL 757

Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
           S CR+H+ L++ E  A  LF L P      YV L+N+YA + KWDDV ++R  MKE ++ 
Sbjct: 758 SWCRIHQNLEMGEKVAAKLFVLEPEKPEN-YVLLSNLYAGLGKWDDVRQVRQRMKEMSLR 816

Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
           K  G SWIE+   V  F  G+R       I      LE ++   GY PD     H + EE
Sbjct: 817 KDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEE 876

Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
            K + L  HSEKLAI +GLIK   GT +RV+KNLR+C DCH A K IS + +REI+VRD 
Sbjct: 877 EKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 936

Query: 555 TRFHHFKDGTCSCGDYW 571
            RFHHF  G CSCGDYW
Sbjct: 937 KRFHHFNKGFCSCGDYW 953



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 159/363 (43%), Gaps = 38/363 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCIL---LNSDDV---V 56
           K    WN+V++ +++      +  E+F K I +  ++  N    C++       DV   +
Sbjct: 149 KNLFQWNAVISSYSRNE-LYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207

Query: 57  AAFDFFQRLP-IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           A      +   ++D    N ++S +     ++ A  LF  MPE+N VSW++MI  + + G
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG 267

Query: 116 Q----LDKAVELFKVAPV----------KSVVAW-------------TAMISGYMKFGKV 148
                +     +  V PV          K V  W              A++  Y K+G +
Sbjct: 268 DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCI 327

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLL 206
             ++ +F     KN+V+WN M+ G+           LLR M+     ++ +  ++ + + 
Sbjct: 328 IDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVP 387

Query: 207 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266
            C   S L   K++H    K     D       ++ Y KCG L  A ++F  I+ K + +
Sbjct: 388 VCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNS 447

Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
           WNA+I GYAQ      +L    +MK+ G+ PD+ T  +LL AC+    + LG +    ++
Sbjct: 448 WNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFII 507

Query: 327 NDY 329
            ++
Sbjct: 508 RNW 510



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 109/263 (41%), Gaps = 54/263 (20%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------------------------ 124
           +R  F A+  KN   W+A+IS Y       + +E+F                        
Sbjct: 139 SRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA 198

Query: 125 ----------------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
                           K   V+ +    A++S Y   G V  A KLFD MP +NLV+WN+
Sbjct: 199 GISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNS 258

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           MI  + +N   +DG             P+ +++ +VL  C+    + +GK VH    K  
Sbjct: 259 MIRVFSDN--GDDG----------AFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLS 306

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           L K+      L+ MY K G + D+  +F     K+VV+WN M+ G++  G       L  
Sbjct: 307 LDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLR 366

Query: 289 KM--KDEGMKPDSITFVALLLAC 309
           +M    E +K D +T +  +  C
Sbjct: 367 QMLAGSEDVKADEVTILNAVPVC 389



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL-LRMMIGLGI 194
           T +I+ Y   G  D +   FD + +KNL  WNA+I+ Y  N    + L++ ++M+    +
Sbjct: 124 TRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHL 183

Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
            P+  +   V+  C+ +S + +G  VH LV K+ L +D      L+S Y   G + DA K
Sbjct: 184 LPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALK 243

Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
           LF  +  +++V+WN+MI  ++ +G             D    PD  T V +L  C     
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLPVCARERE 291

Query: 315 VDLG 318
           + +G
Sbjct: 292 IGVG 295



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 214 LQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
           +++G+++H LV  S  L  D    T +I+MY  CG  +D+   F  ++ K++  WNA+IS
Sbjct: 100 IEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVIS 159

Query: 273 GYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQY-FDSMVNDYG 330
            Y+++    + L +F KM     + PD+ TF  ++ AC  AG+ D+GI      +V   G
Sbjct: 160 SYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKAC--AGISDVGIGLAVHGLVVKTG 217

Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
           +         +V   G  G + +A+ L   MP
Sbjct: 218 LVEDLFVGNALVSFYGTHGFVSDALKLFDIMP 249


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/483 (38%), Positives = 283/483 (58%), Gaps = 17/483 (3%)

Query: 105 SAMISGYIECGQLDKAVELF----------------KVAPVKSVVAWTAMISGYMKFGKV 148
           S ++  Y+ C  ++ A  LF                K     +VV W  MI G ++ G +
Sbjct: 161 SNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A+ LFDEMP +++V+WN MI+GY +N    + + L + M    I PN  +L SVL   
Sbjct: 221 KSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
           + + +L+LGK +H    K+ +  D    + L+ MY KCG ++ A ++F  + +++ +TW+
Sbjct: 281 ARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWS 340

Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328
           A+I  +A HG+ E A+  F  M   G+ P+ + ++ +L AC+HAGLV+ G  +F  MV  
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388
            G+  + +HY CMVDLLGRAG L EA +LI+ MP +P   I+  LL AC++HK L + E 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
            A  L  L P + +G YV L+N+YA++  W+ VAR+RL MK  ++ K PG SWIE+  ++
Sbjct: 461 VAETLMELAPHD-SGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGII 519

Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 508
           HEF   D  H +   I   L E+  +++  GY P+         E+ + + L +HSEK+A
Sbjct: 520 HEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIA 579

Query: 509 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 568
           +AFGLI      P+++ KNLR+C DCH + K IS I KR+IIVRD  RFH F+ G+CSC 
Sbjct: 580 VAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCM 639

Query: 569 DYW 571
           DYW
Sbjct: 640 DYW 642



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 133/308 (43%), Gaps = 55/308 (17%)

Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENS---WAEDGLKLLRMMIGLG-IRPNASSLSS 203
           +D A  +F +MP  N   WN ++    E +      + L L   M+  G ++PN  +  S
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA----CK----- 254
           VL  C+  S L+ GKQ+H L+ K    +D   ++ L+ MY  C  +EDA    CK     
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 255 --------------------------------------LFLEIQRKDVVTWNAMISGYAQ 276
                                                 LF E+  + VV+WN MISGYAQ
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247

Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
           +G   +A+ LF +M+   + P+ +T V++L A    G ++LG ++         +     
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEIDDV 306

Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLF 394
             + +VD+  + G + +A+ + + +P K     +  ++ A  +H R +  +  F  M   
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKA 365

Query: 395 NLNPANAA 402
            + P + A
Sbjct: 366 GVTPNDVA 373



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 62/284 (21%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------- 125
           WN MI G V+  ++  A++LF  MP ++ VSW+ MISGY + G   +A+ LF+       
Sbjct: 207 WNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNI 266

Query: 126 ---------VAPVKSVVA------W-----------------TAMISGYMKFGKVDLAEK 153
                    V P  + +       W                 +A++  Y K G +D A +
Sbjct: 267 DPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQ 326

Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
           +F+ +P +N +TW+A+I  +  +  AED +    +M   G+ PN  +   +L  CSH   
Sbjct: 327 VFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGL 386

Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLF--LEIQRKDV 264
           ++ G+      F S + K    L P I  Y C      + G LE+A +L   + I+  DV
Sbjct: 387 VEEGRS-----FFSHMVK-VVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDV 440

Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMK---PDSITFVAL 305
           + W A++     H    K L++ +++ +  M+    DS ++VAL
Sbjct: 441 I-WKALLGACKMH----KNLKMGERVAETLMELAPHDSGSYVAL 479


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/426 (42%), Positives = 261/426 (61%), Gaps = 1/426 (0%)

Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
           G ++ A K+FDEMP  + VTW+AMI GY     + + + L R M    + P+  ++ S+L
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSML 241

Query: 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 265
             C+ L +L+LGK +   + +  + K       LI M+ KCGD+  A KLF  +  K +V
Sbjct: 242 SACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIV 301

Query: 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325
           +W ++I G A HG+G++A  LF++M   G+ PD + F+ LL AC+H+GLV+ G +YF SM
Sbjct: 302 SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSM 361

Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385
           +  Y +  K +HY CMVD+  R G + EA++ ++ MP +P P I  TL+SACR H    L
Sbjct: 362 MKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKL 421

Query: 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 445
            E     L    P + +  YV L+NIYA    W+   +IR  M+   + K+PG + IE+ 
Sbjct: 422 GEKITKLLMKHEPLHESN-YVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEID 480

Query: 446 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 505
             ++EF +GD+ H +   I+E + E+ + MK +GY P     L  + EE KE  L  HSE
Sbjct: 481 NEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSE 540

Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
           KLAIAFGL++ P GTPIR+ KNLRVC DCH A+K+IS I  REII+RD  RFHHFK G C
Sbjct: 541 KLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQC 600

Query: 566 SCGDYW 571
           SCGD+W
Sbjct: 601 SCGDFW 606



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 11/252 (4%)

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
           ++ G  +  + L K A + S++  T   + ++   + D   +L+D         +N +I 
Sbjct: 53  LKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADT--RLYDAF------LFNTLIR 104

Query: 172 GYVENSWAED-GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230
            Y +   ++D  L L  +M+   I PN  +   VL  C+ L  L LG+ VH  V K    
Sbjct: 105 AYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFD 164

Query: 231 KDTTALTPLISMY-CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
            D      ++ MY C  G +  A K+F E+ + D VTW+AMI GYA+ G+  +A+ LF +
Sbjct: 165 CDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFRE 224

Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
           M+   + PD IT V++L AC   G ++LG ++ ++ +  + I    +    ++D+  + G
Sbjct: 225 MQMAEVCPDEITMVSMLSACTDLGALELG-KWIEAYIERHEIHKPVEVSNALIDMFAKCG 283

Query: 350 KLVEAVDLIKKM 361
            + +A+ L + M
Sbjct: 284 DISKALKLFRAM 295



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 47/285 (16%)

Query: 69  DTASWNTMISGF-VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-- 125
           D    NTM+  +      +  AR +F  MP+ +SV+WSAMI GY   G+  +AV LF+  
Sbjct: 166 DIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREM 225

Query: 126 ----VAP---------------------------------VKSVVAWTAMISGYMKFGKV 148
               V P                                  K V    A+I  + K G +
Sbjct: 226 QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDI 285

Query: 149 DLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208
             A KLF  M  K +V+W ++I G   +   ++   L   M   G+ P+  +   +L  C
Sbjct: 286 SKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSAC 345

Query: 209 SHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVT 266
           SH   ++ G++    ++ K  L         ++ MYC+ G +++A +    +    + V 
Sbjct: 346 SHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVI 405

Query: 267 WNAMISGYAQHGK---GEKALRLFDKMKDEGMKPDSITFVALLLA 308
              ++S    HG+   GEK  +L   MK E +   +   ++ + A
Sbjct: 406 LRTLVSACRGHGEFKLGEKITKLL--MKHEPLHESNYVLLSNIYA 448


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 315/564 (55%), Gaps = 38/564 (6%)

Query: 17  AKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFD---FFQRL----PIK 68
           A+    L  A+++FD+IP P DVV YN +L            A +    F R+       
Sbjct: 77  AEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAP 136

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT ++ +++      K  A AR    A  E       A+ +G         A E   VAP
Sbjct: 137 DTYTFVSLL------KACASAR----AGEEGRQAHGVAVKAG---------AAEHEYVAP 177

Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
                    +I+ Y + G V  A  +FD M  + +V++NAMI   V +S   + L L R 
Sbjct: 178 T--------LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFRE 229

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M   G++P + +L SVL  C+ L +L+LG+ +H  + K  L       T LI MY KCG 
Sbjct: 230 MQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGS 289

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
           LEDA  +F +++ +D   W+ M+  YA HG G +A+ +F++MK +GMKPD +TF+ +L A
Sbjct: 290 LEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYA 349

Query: 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
           C+H+G+V  G+QYFDSM  +YGI +   HY C+ DLL R+G+L  A   I ++P KP   
Sbjct: 350 CSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAI 408

Query: 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428
           ++ TLLSAC  H  +D+ +     +  L+ ++  G YV  +N+ A   +W+++  +R  M
Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSH-GGDYVIFSNLCANTGRWEEMNMVRKLM 467

Query: 429 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 488
            E  VVK+PG S IE+  +VHEF +GD  HP        + E+ +++KL GYVP+     
Sbjct: 468 SEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVF 527

Query: 489 HA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
           H  +GEE K   L +HSEKLAI+FGL+    GT +R+ KNLRVC DCH   K +S +  R
Sbjct: 528 HVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNR 587

Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
            II+RD  RFHHF+DG CSCGDYW
Sbjct: 588 RIILRDLNRFHHFEDGVCSCGDYW 611


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/525 (38%), Positives = 306/525 (58%), Gaps = 13/525 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIE 113
           A + F  +P ++ A+WN  IS  VQ +    A    ++      E NS+++ A ++  ++
Sbjct: 162 ACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVD 221

Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNA 168
             +L+   +L     +    + V     +I  Y K G +  AE +F+ +   KN+V+W +
Sbjct: 222 MVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCS 281

Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
           M+A  V+N   E    +  +     + P    +SSVL  C+ L  L+LG+ VH L  K+ 
Sbjct: 282 MLAALVQNHEEERACMVF-LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKAC 340

Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
           +  +    + L+ MY KCG +E+A ++F E+  +++VTWNAMI GYA  G  + ALRLF+
Sbjct: 341 VEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFE 400

Query: 289 KMK--DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
           +M     G++P  +T +++L  C+  G V+ GIQ F+SM  +YGI    +H+ C+VDLLG
Sbjct: 401 EMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLG 460

Query: 347 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406
           R+G +  A + I+ M  +P  +++G LL ACR+H + +L + AA  LF L+  ++ G +V
Sbjct: 461 RSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDS-GNHV 519

Query: 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 466
            L+N+ A+  +W++   +R  MK+  + K  GYSWI V   +H F++ D  H     I  
Sbjct: 520 VLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQA 579

Query: 467 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 526
            L +L   MK AGYVPD   +L  + +E K   + +HSEK+A+AFGLI +P G PIR+ K
Sbjct: 580 MLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITK 639

Query: 527 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
           NLR+CGDCH A K+IS I  REIIVRD  RFH FKDG CSC DYW
Sbjct: 640 NLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 2/251 (0%)

Query: 126 VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
           V P+ S ++   +++ Y K   ++ A+ +      + +VTW ++I+G V N      L  
Sbjct: 37  VTPLPSFLS-NHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLH 95

Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
              M    ++PN  +   V    + +     GKQ+H L  K  +  D         MYCK
Sbjct: 96  FTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCK 155

Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
            G   DAC +F E+ ++++ TWNA IS   Q  +   A+  F +      +P+SITF A 
Sbjct: 156 TGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAF 215

Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
           L AC     ++LG Q   + +   G          ++D  G+ G +V A  +  ++  + 
Sbjct: 216 LNACVDMVRLNLGRQ-LHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRK 274

Query: 366 QPAIFGTLLSA 376
               + ++L+A
Sbjct: 275 NVVSWCSMLAA 285


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 348/613 (56%), Gaps = 62/613 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K +V+WNS++ G   Q G   +A E +  + + +++      S  L++S    A+  
Sbjct: 95  MMEKDSVSWNSMITGL-DQNGCFIEAVERYQSMRRHEILPG----SFTLISSLSSCASLK 149

Query: 61  FFQ----------RLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           + +          +L I  + +  N +++ + +   + + R +F +MPE + VSW+++I 
Sbjct: 150 WAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIG 209

Query: 110 GY----------IEC----------------------------GQLDKAVE--LFKVAPV 129
                       + C                            G+L K +     K    
Sbjct: 210 ALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIA 269

Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRM 188
                  A+I+ Y K G++D  EK+F  M  + + VTWN+MI+GY+ N      L L+  
Sbjct: 270 DEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWF 329

Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
           M+  G R ++   ++VL   + +++L+ G +VH    ++ L  D    + L+ MY KCG 
Sbjct: 330 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 389

Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLL 307
           L+ A + F  +  ++  +WN+MISGYA+HG+GE+AL+LF  MK +G  P D +TFV +L 
Sbjct: 390 LDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLS 449

Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
           AC+HAGL++ G ++F+SM + YG+A + +H++CM DLLGRAG+L +  D I KMP KP  
Sbjct: 450 ACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNV 509

Query: 368 AIFGTLLSAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
            I+ T+L AC R + R  +L + AA  LF L P NA   YV L N+YAA  +W+D+ + R
Sbjct: 510 LIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN-YVLLGNMYAAGGRWEDLVKAR 568

Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
             MK+ +V K  GYSW+ +   VH F +GD+ HP+   I++KLKEL ++M+ AGYVP   
Sbjct: 569 KKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMRDAGYVPQTG 628

Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYISAI 544
           FAL+ + +E KE++L +HSEKLA+AF L      T PIR+ KNLRVCGDCH A KYIS I
Sbjct: 629 FALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKI 688

Query: 545 EKREIIVRDTTRF 557
           E R+II+RD+ R+
Sbjct: 689 EGRQIILRDSNRY 701



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 183/401 (45%), Gaps = 19/401 (4%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTA 71
            A+Q G LK  +E+   +    +V + + +   L+N       +  A   F  +  KD+ 
Sbjct: 43  LAEQVG-LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSV 101

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-AMISGYIECGQLDKAV-------EL 123
           SWN+MI+G  Q     +A + + +M     +  S  +IS    C  L  A        E 
Sbjct: 102 SWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGES 161

Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA-EDG 182
            K+    +V    A+++ Y + G ++   K+F  MP  + V+WN++I     +  +  + 
Sbjct: 162 LKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEA 221

Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
           +      +  G + N  + SSVL   S LS  +LGKQ+H L  K  +  + T    LI+ 
Sbjct: 222 VACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIAC 281

Query: 243 YCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
           Y KCG+++   K+F  + +R+D VTWN+MISGY  +    KAL L   M   G + DS  
Sbjct: 282 YGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFM 341

Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
           +  +L A      ++ G++     V    + +     + +VD+  + G+L  A+     M
Sbjct: 342 YATVLSAFASVATLERGMEVHACSVRAC-LESDVVVGSALVDMYSKCGRLDYALRFFNTM 400

Query: 362 PFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNPAN 400
           P +   + + +++S    H + +  L  FA M L    P +
Sbjct: 401 PVRNSYS-WNSMISGYARHGQGEEALKLFANMKLDGQTPPD 440



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 18/320 (5%)

Query: 79  GFVQKKNMAKARDLFL---AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           G V++K   +A  LF+   +M + +  S+  ++S + E   L + V L K   V   V  
Sbjct: 3   GLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEY-SLAEQVGLKKGREVHGHVIT 61

Query: 136 TAMI-----------SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
           T ++           + Y K G +  A ++F  M  K+ V+WN+MI G  +N    + ++
Sbjct: 62  TGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVE 121

Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
             + M    I P + +L S L  C+ L   +LG+Q+H    K  +  + +    L+++Y 
Sbjct: 122 RYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYA 181

Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG-EKALRLFDKMKDEGMKPDSITFV 303
           + G L +  K+F  +   D V+WN++I   A   +   +A+  F      G K + ITF 
Sbjct: 182 ETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFS 241

Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
           ++L A +     +LG Q    +   Y IA +      ++   G+ G++     +  +M  
Sbjct: 242 SVLSAVSSLSFGELGKQ-IHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSE 300

Query: 364 KPQPAIFGTLLSACRVHKRL 383
           +     + +++S   +H  L
Sbjct: 301 RRDDVTWNSMISG-YIHNEL 319


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,910,099,547
Number of Sequences: 23463169
Number of extensions: 359164004
Number of successful extensions: 1006642
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10072
Number of HSP's successfully gapped in prelim test: 2363
Number of HSP's that attempted gapping in prelim test: 791790
Number of HSP's gapped (non-prelim): 66560
length of query: 571
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 423
effective length of database: 8,886,646,355
effective search space: 3759051408165
effective search space used: 3759051408165
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)