BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008280
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T64|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
M + H +G+ L LF +KDE +KP S TFV L G+ + +QY
Sbjct: 15 MYKNHKTHHEGDSGLDLF-IVKDEVLKPKSTTFVKL-------GIKAIALQY 58
>pdb|3T60|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
M + H +G+ L LF +KDE +KP S TFV L G+ + +QY
Sbjct: 15 MYKNHKTHHEGDSGLDLF-IVKDEVLKPKSTTFVKL-------GIKAIALQY 58
>pdb|1VYQ|A Chain A, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|B Chain B, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|C Chain C, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|2Y8C|A Chain A, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|B Chain B, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|C Chain C, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
Length = 173
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
M + H +G+ L LF +KDE +KP S TFV L G+ + +QY
Sbjct: 15 MYKNHKTHHEGDSGLDLF-IVKDEVLKPKSTTFVKL-------GIKAIALQY 58
>pdb|3BIL|A Chain A, Crystal Structure Of A Probable Laci Family
Transcriptional Regulator From Corynebacterium
Glutamicum
pdb|3BIL|B Chain B, Crystal Structure Of A Probable Laci Family
Transcriptional Regulator From Corynebacterium
Glutamicum
Length = 348
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV---DLGIQYFDS 324
+ GY Q E A +L D+ DS+ + ++ AC+ AGLV D+ + FD+
Sbjct: 222 LGGYEQSVGFEGATKLLDQGAKTLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFDT 278
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 260 QRKDVVT---WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
Q++ ++T +NA++ G+A+ G ++ + + +KD G+ PD +++ A L
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
N + ++S EC LD+ +L V S +TA +G+ G++ +A+ L M
Sbjct: 11 NEHRLTQLLSIAEECETLDRLKQL-----VDSGRIFTAY-NGFEPSGRIHIAQALITVMN 64
Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKL 185
T N++ + Y+ + +A+ LK+
Sbjct: 65 TNNMIECGGQMIIYIADWFAKMNLKM 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,774,945
Number of Sequences: 62578
Number of extensions: 659603
Number of successful extensions: 1424
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1423
Number of HSP's gapped (non-prelim): 7
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)