BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008280
(571 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/572 (68%), Positives = 463/572 (80%), Gaps = 3/572 (0%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K T+ WNS+L G +K ++ +A +LFD+IP+PD SYNIMLSC + N + A
Sbjct: 87 MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQS 145
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
FF R+P KD ASWNTMI+G+ ++ M KAR+LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKA 205
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP-TKNLVTWNAMIAGYVENSWA 179
FKVAPV+ VVAWTAMI+GYMK KV+LAE +F +M KNLVTWNAMI+GYVENS
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265
Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
EDGLKL R M+ GIRPN+S LSS LLGCS LS+LQLG+Q+HQ+V KS LC D TALT L
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSL 325
Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
ISMYCKCG+L DA KLF +++KDVV WNAMISGYAQHG +KAL LF +M D ++PD
Sbjct: 326 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 385
Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
ITFVA+LLACNHAGLV++G+ YF+SMV DY + +PDHYTCMVDLLGRAGKL EA+ LI+
Sbjct: 386 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 445
Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
MPF+P A+FGTLL ACRVHK ++LAEFAA L LN NAAG YVQLANIYA+ +W+
Sbjct: 446 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWE 504
Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 479
DVAR+R MKE+NVVK+PGYSWIE+ VH FRS DR+HPEL SIH+KLKELEK+MKLAG
Sbjct: 505 DVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAG 564
Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
Y P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+ I+VFKNLR+CGDCH+A K
Sbjct: 565 YKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIK 624
Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
+IS IEKREIIVRDTTRFHHFKDG+CSCGDYW
Sbjct: 625 FISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 232 DTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLF 287
D + PL + +C GD++ A ++F ++ K+ +TWN+++ G ++ + +A +LF
Sbjct: 57 DQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116
Query: 288 DKMKDEGMKPDSITFVALLLACNHAGL-VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346
D++ + PD+ ++ ++L+C + + +FD M + AA + M+
Sbjct: 117 DEIPE----PDTFSY-NIMLSCYVRNVNFEKAQSFFDRM--PFKDAAS---WNTMITGYA 166
Query: 347 RAGKLVEAVDLIKKM 361
R G++ +A +L M
Sbjct: 167 RRGEMEKARELFYSM 181
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 570 bits (1470), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/565 (48%), Positives = 378/565 (66%), Gaps = 3/565 (0%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
V+WN +L GF K++ K+ +A++ FD + DVVS+N +++ S + A F P
Sbjct: 220 VSWNCLLGGFVKKK-KIVEARQFFDSMNVRDVVSWNTIITG-YAQSGKIDEARQLFDESP 277
Query: 67 IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
++D +W M+SG++Q + + +AR+LF MPE+N VSW+AM++GY++ +++ A ELF V
Sbjct: 278 VQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDV 337
Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
P ++V W MI+GY + GK+ A+ LFD+MP ++ V+W AMIAGY ++ + + L+L
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397
Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
M G R N SS SS L C+ + +L+LGKQ+H + K L+ MYCKC
Sbjct: 398 VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 457
Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
G +E+A LF E+ KD+V+WN MI+GY++HG GE ALR F+ MK EG+KPD T VA+L
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
AC+H GLVD G QYF +M DYG+ HY CMVDLLGRAG L +A +L+K MPF+P
Sbjct: 518 SACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577
Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
AI+GTLL A RVH +LAE AA +F + P N+ G YV L+N+YA+ +W DV ++R+
Sbjct: 578 AAIWGTLLGASRVHGNTELAETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRV 636
Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
M++ V K+PGYSWIE+ H F GD HPE I L+EL+ RMK AGYV
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSV 696
Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
LH V EE KE+++ +HSE+LA+A+G+++V G PIRV KNLRVC DCH A KY++ I
Sbjct: 697 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITG 756
Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
R II+RD RFHHFKDG+CSCGDYW
Sbjct: 757 RLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 230/431 (53%), Gaps = 45/431 (10%)
Query: 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
++V++N +++G+ + G+ + A++LFD++P+ D+VS+N+M+ + N ++ A + F+
Sbjct: 94 SSVSYNGMISGYLRN-GEFELARKLFDEMPERDLVSWNVMIKGYVRNR-NLGKARELFEI 151
Query: 65 LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
+P +D SWNTM+SG+ Q + AR +F MPEKN VSW+A++S Y++ ++++A LF
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 125 KVAP-------------------------------VKSVVAWTAMISGYMKFGKVDLAEK 153
K V+ VV+W +I+GY + GK+D A +
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
LFDE P +++ TW AM++GY++N E+ +L M N S +++L G
Sbjct: 272 LFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGER 327
Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
+++ K+ +F C++ + +I+ Y +CG + +A LF ++ ++D V+W AMI+G
Sbjct: 328 MEMAKE----LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
Y+Q G +ALRLF +M+ EG + + +F + L C ++LG Q +V G
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYET 442
Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAM 391
++ + + G + EA DL K+M K + + T+++ H + L F +M
Sbjct: 443 GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEVALRFFESM 501
Query: 392 NLFNLNPANAA 402
L P +A
Sbjct: 502 KREGLKPDDAT 512
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 178/347 (51%), Gaps = 23/347 (6%)
Query: 32 KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
K D+ +N+ +S + + A F+R+P + S+N MISG+++ AR
Sbjct: 58 KCGDSDIKEWNVAISS-YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARK 116
Query: 92 LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
LF MPE++ VSW+ MI GY+ L KA ELF++ P + V +W M+SGY + G VD A
Sbjct: 117 LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDA 176
Query: 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCS 209
+FD MP KN V+WNA+++ YV+NS E+ L + R N + S + +L G
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFV 230
Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
+ +Q F S +D + +I+ Y + G +++A +LF E +DV TW A
Sbjct: 231 KKKKIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
M+SGY Q+ E+A LFDKM + + +++ A+L +++ + FD M
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMP--- 339
Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
+ M+ + GK+ EA +L KMP K P + +++
Sbjct: 340 --CRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/572 (43%), Positives = 353/572 (61%), Gaps = 4/572 (0%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + V+W + G G++ A++L+D +P DVV+ M+ L V A
Sbjct: 136 MPERNEVSWTVMFGGLIDD-GRIDKARKLYDMMPVKDVVASTNMIGG-LCREGRVDEARL 193
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F + ++ +W TMI+G+ Q + AR LF MPEK VSW++M+ GY G+++ A
Sbjct: 194 IFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
E F+V P+K V+A AMI G+ + G++ A ++FD M ++ TW MI Y +
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313
Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
+ L L M G+RP+ SL S+L C+ L+SLQ G+QVH + + D + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373
Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300
+MY KCG+L A +F KD++ WN++ISGYA HG GE+AL++F +M G P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433
Query: 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360
T +A+L AC++AG ++ G++ F+SM + + + +HY+C VD+LGRAG++ +A++LI+
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493
Query: 361 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420
M KP ++G LL AC+ H RLDLAE AA LF P N AG YV L++I A+ KW D
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDN-AGTYVLLSSINASRSKWGD 552
Query: 421 VARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAG 479
VA +R +M+ NNV K PG SWIEVG VH F R G + HPE I L++ + ++ AG
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAG 612
Query: 480 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 539
Y PD LH V EE K L HSE+LA+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672
Query: 540 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
IS + +REII+RD RFHHF +G CSC DYW
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 186/328 (56%), Gaps = 14/328 (4%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
+ K +WNS+++G+ G K+A++LFD++ + +VVS+N ++S + N +V A +
Sbjct: 43 LQFKAIGSWNSIVSGYFSN-GLPKEARQLFDEMSERNVVSWNGLVSGYIKNRM-IVEARN 100
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F+ +P ++ SW M+ G++Q+ + +A LF MPE+N VSW+ M G I+ G++DKA
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKA 160
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
+L+ + PVK VVA T MI G + G+VD A +FDEM +N+VTW MI GY +N+ +
Sbjct: 161 RKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVD 220
Query: 181 DGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
KL +M P + +S S+LLG + ++ ++ +++ P+ A
Sbjct: 221 VARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNA 270
Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
+I + + G++ A ++F ++ +D TW MI Y + G +AL LF +M+ +G++P
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330
Query: 299 SITFVALLLACNHAGLVDLGIQYFDSMV 326
+ +++L C + G Q +V
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLV 358
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 43/268 (16%)
Query: 58 AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
A FF L K SWN+++SG+ +AR LF M E+N VSW+ ++SGYI+ +
Sbjct: 36 ARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMI 95
Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
+A +F++ P ++VV+WTAM+ GYM+ G V AE LF MP +N V+W M G +++
Sbjct: 96 VEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDG 155
Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
+ KL MM P+ KD A T
Sbjct: 156 RIDKARKLYDMM--------------------------------------PV-KDVVAST 176
Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
+I C+ G +++A +F E++ ++VVTW MI+GY Q+ + + A +LF+ M ++
Sbjct: 177 NMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK---- 232
Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSM 325
+++ ++LL +G ++ ++F+ M
Sbjct: 233 TEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/573 (43%), Positives = 359/573 (62%), Gaps = 5/573 (0%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K V+W +L GF Q G++ DA +L++ IP D ++ M+ L V A +
Sbjct: 136 MPEKNKVSWTVMLIGFL-QDGRIDDACKLYEMIPDKDNIARTSMIHG-LCKEGRVDEARE 193
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F + + +W TM++G+ Q + AR +F MPEK VSW++M+ GY++ G+++ A
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
ELF+V PVK V+A AMISG + G++ A ++FD M +N +W +I + N +
Sbjct: 254 EELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313
Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
+ L L +M G+RP +L S+L C+ L+SL GKQVH + + D + L+
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373
Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDS 299
+MY KCG+L + +F KD++ WN++ISGYA HG GE+AL++F +M G KP+
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433
Query: 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359
+TFVA L AC++AG+V+ G++ ++SM + +G+ HY CMVD+LGRAG+ EA+++I
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493
Query: 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419
M +P A++G+LL ACR H +LD+AEF A L + P N +G Y+ L+N+YA+ +W
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPEN-SGTYILLSNMYASQGRWA 552
Query: 420 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLA 478
DVA +R MK V K PG SW EV VH F R G HPE SI + L EL+ ++ A
Sbjct: 553 DVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREA 612
Query: 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 538
GY PD +ALH V EE K L +HSE+LA+A+ L+K+ G PIRV KNLRVC DCH A
Sbjct: 613 GYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAI 672
Query: 539 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
K IS +++REII+RD RFHHF++G CSC DYW
Sbjct: 673 KIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 201/368 (54%), Gaps = 25/368 (6%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
K+ +WNS++AG+ +DA++LFD++P +++S+N ++S + N + + A F
Sbjct: 46 KSISSWNSMVAGYFANLMP-RDARKLFDEMPDRNIISWNGLVSGYMKNGE-IDEARKVFD 103
Query: 64 RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
+P ++ SW ++ G+V + A LF MPEKN VSW+ M+ G+++ G++D A +L
Sbjct: 104 LMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKL 163
Query: 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
+++ P K +A T+MI G K G+VD A ++FDEM ++++TW M+ GY +N+ +D
Sbjct: 164 YEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDAR 223
Query: 184 KLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
K+ +M P + +S S+L+G ++ +++ +++ P+ A +IS
Sbjct: 224 KIFDVM------PEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPV----IACNAMIS 273
Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
+ G++ A ++F ++ ++ +W +I + ++G +AL LF M+ +G++P T
Sbjct: 274 GLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPT 333
Query: 302 FVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
+++L C + G Q +V D +A + ++ + + G+LV++
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA------SVLMTMYIKCGELVKSKL 387
Query: 357 LIKKMPFK 364
+ + P K
Sbjct: 388 IFDRFPSK 395
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 53/339 (15%)
Query: 58 AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
A F K +SWN+M++G+ AR LF MP++N +SW+ ++SGY++ G++
Sbjct: 36 ARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEI 95
Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
D+A ++F + P ++VV+WTA++ GY+ GKVD+AE LF +MP KN V+W M+ G++++
Sbjct: 96 DEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDG 155
Query: 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 237
+D KL M+ P+ KD A T
Sbjct: 156 RIDDACKLYEMI------PD---------------------------------KDNIART 176
Query: 238 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297
+I CK G +++A ++F E+ + V+TW M++GY Q+ + + A ++FD M ++
Sbjct: 177 SMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK---- 232
Query: 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357
+++ ++L+ G ++ + F+ M IA M+ LG+ G++ +A +
Sbjct: 233 TEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC-----NAMISGLGQKGEIAKARRV 287
Query: 358 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396
M + A + T++ ++H+R E A++LF L
Sbjct: 288 FDSMKER-NDASWQTVI---KIHERNGF-ELEALDLFIL 321
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/627 (38%), Positives = 351/627 (55%), Gaps = 80/627 (12%)
Query: 22 KLKDAQELFDKIPQPDVVSYNIMLS----------------------CILLNSD---DVV 56
+++DA+++FD++P+ D + +N M+S C L++ D++
Sbjct: 169 RVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDIL 228
Query: 57 AAFDFFQRLPI----------KDTASWNTMISGFVQ------KKNMAKARDLFLAMPEKN 100
A Q L + S + +++GF+ K M A LF + +
Sbjct: 229 PAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA--LFREFRKPD 286
Query: 101 SVSWSAMISGYIECGQLDKAVELFK----------------VAPVKS------------- 131
V+++AMI GY G+ + ++ LFK + PV
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL 346
Query: 132 -------VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
TA+ + Y K +++ A KLFDE P K+L +WNAMI+GY +N ED +
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406
Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
L R M PN +++ +L C+ L +L LGK VH LV + T LI MY
Sbjct: 407 LFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466
Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
KCG + +A +LF + +K+ VTWN MISGY HG+G++AL +F +M + G+ P +TF+
Sbjct: 467 KCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526
Query: 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
+L AC+HAGLV G + F+SM++ YG HY CMVD+LGRAG L A+ I+ M +
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE 586
Query: 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424
P +++ TLL ACR+HK +LA + LF L+P N G +V L+NI++A + + A +
Sbjct: 587 PGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDN-VGYHVLLSNIHSADRNYPQAATV 645
Query: 425 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484
R + K+ + K PGY+ IE+G H F SGD+ HP++ I+EKL++LE +M+ AGY P+
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPET 705
Query: 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 544
E ALH V EE +E ++ HSE+LAIAFGLI GT IR+ KNLRVC DCH TK IS I
Sbjct: 706 ELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKI 765
Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
+R I+VRD RFHHFKDG CSCGDYW
Sbjct: 766 TERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 170/367 (46%), Gaps = 27/367 (7%)
Query: 46 SCILLNSDDVVAAFDF---------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
S +LL S+ V F F F R+P KDT WNTMISG+ + + ++ +F +
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211
Query: 97 PEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGK 147
+ ++ + ++ E +L +++ +A + T IS Y K GK
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271
Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
+ + LF E ++V +NAMI GY N E L L + ++ G R +S+L S++
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331
Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
HL L +H KS + T L ++Y K ++E A KLF E K + +W
Sbjct: 332 SGHL---MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSW 388
Query: 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327
NAMISGY Q+G E A+ LF +M+ P+ +T +L AC G + LG ++ +V
Sbjct: 389 NAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVR 447
Query: 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 387
+ T ++ + + G + EA L M K + T++S +H +
Sbjct: 448 STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQ--- 503
Query: 388 FAAMNLF 394
A+N+F
Sbjct: 504 -EALNIF 509
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 147/376 (39%), Gaps = 85/376 (22%)
Query: 12 VLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
VL GF + GK+K LF + +PD+V+YN M+ N + + + F+ L
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETEL-SLSLFKELMLS 316
Query: 66 -------------PIKDTASWNTMISGFVQKKN--------------------MAKARDL 92
P+ I G+ K N + AR L
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376
Query: 93 FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA--------PV--------------- 129
F PEK+ SW+AMISGY + G + A+ LF+ PV
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGAL 436
Query: 130 ----------------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
S+ TA+I Y K G + A +LFD M KN VTWN MI+GY
Sbjct: 437 SLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGY 496
Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKD 232
+ ++ L + M+ GI P + VL CSH ++ G ++ + ++ +
Sbjct: 497 GLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPS 556
Query: 233 TTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290
++ + + G L+ A + + I+ V W ++ H A + +K+
Sbjct: 557 VKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV-WETLLGACRIHKDTNLARTVSEKL 615
Query: 291 KDEGMKPDSITFVALL 306
+ + PD++ + LL
Sbjct: 616 FE--LDPDNVGYHVLL 629
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
Q H + D + LT L G + A +FL +QR DV +N ++ G++ +
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 279 KGEKALRLFDKM-KDEGMKPDSITF 302
+L +F + K +KP+S T+
Sbjct: 98 SPHSSLSVFAHLRKSTDLKPNSSTY 122
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/605 (41%), Positives = 352/605 (58%), Gaps = 46/605 (7%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
NS+L +AK G A+ +FD++ D+ S+N M++ + + + A F+++ +D
Sbjct: 185 NSLLNMYAKC-GDPMMAKFVFDRMVVRDISSWNAMIA-LHMQVGQMDLAMAQFEQMAERD 242
Query: 70 TASWNTMISGFVQKKNMAKARDLFLAM-------PEK----------------------- 99
+WN+MISGF Q+ +A D+F M P++
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302
Query: 100 ----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKS--VVAWTAMISGYMKFGK 147
+ + +A+IS Y CG ++ A L + K + +TA++ GY+K G
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362
Query: 148 VDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207
++ A+ +F + +++V W AMI GY ++ + + L R M+G G RPN+ +L+++L
Sbjct: 363 MNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422
Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVT 266
S L+SL GKQ+H KS + LI+MY K G++ A + F I+ +D V+
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482
Query: 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
W +MI AQHG E+AL LF+ M EG++PD IT+V + AC HAGLV+ G QYFD M
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542
Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
+ I HY CMVDL GRAG L EA + I+KMP +P +G+LLSACRVHK +DL
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602
Query: 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 446
+ AA L L P N+ G Y LAN+Y+A KW++ A+IR SMK+ V K G+SWIEV
Sbjct: 603 KVAAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661
Query: 447 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 506
VH F D HPE I+ +K++ +K GYVPD LH + EEVKEQ+L HSEK
Sbjct: 662 KVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEK 721
Query: 507 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 566
LAIAFGLI P T +R+ KNLRVC DCH A K+IS + REIIVRDTTRFHHFKDG CS
Sbjct: 722 LAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCS 781
Query: 567 CGDYW 571
C DYW
Sbjct: 782 CRDYW 786
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 192/413 (46%), Gaps = 66/413 (15%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML----------SCILL 50
M ++T +WN+VL+ ++K RG + E FD++PQ D VS+ M+ I +
Sbjct: 75 MPLRTAFSWNTVLSAYSK-RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRV 133
Query: 51 NSDDV---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-A 106
D V + F + A+ M +G K + + + +VS S +
Sbjct: 134 MGDMVKEGIEPTQFTLTNVLASVAATRCMETG-------KKVHSFIVKLGLRGNVSVSNS 186
Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
+++ Y +CG A +F V+ + +W AMI+ +M+ G++DLA F++M +++VTW
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246
Query: 167 NAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
N+MI+G+ + + L + +M+ + P+ +L+SVL C++L L +GKQ+H +
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306
Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKL------------------------------ 255
+ L LISMY +CG +E A +L
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQA 366
Query: 256 ---FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
F+ ++ +DVV W AMI GY QHG +A+ LF M G +P+S T A+L +
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSL 426
Query: 313 GLVDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLV---EAVDLIK 359
+ G Q S V Y ++ ++ + +AG + A DLI+
Sbjct: 427 ASLSHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGNITSASRAFDLIR 475
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 162/356 (45%), Gaps = 35/356 (9%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
N +++ + + AR LF MP + + SW+ ++S Y + G +D E F P + V
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 134 AWTAMISGYMKFGKVDLAEKLFDEM------PTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
+WT MI GY G+ A ++ +M PT+ T ++A E G K+
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ--FTLTNVLASVAATRCMETGKKVHS 170
Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
++ LG+R N S +S+L + + K VF + +D ++ +I+++ + G
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK----FVFDRMVVRDISSWNAMIALHMQVG 226
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 306
++ A F ++ +D+VTWN+MISG+ Q G +AL +F KM +D + PD T ++L
Sbjct: 227 QMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVL 286
Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
AC + + +G Q +V G ++ + R G + A LI++
Sbjct: 287 SACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRLIEQ------ 339
Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
R K L + F A+ L+ G Q NI+ ++K D VA
Sbjct: 340 -----------RGTKDLKIEGFTAL----LDGYIKLGDMNQAKNIFVSLKDRDVVA 380
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 196 PNASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKCG 247
P SLS++L C++L + K VH V KS L + L+++Y K G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
A KLF E+ + +WN ++S Y++ G + FD++ + DS+++ +++
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 119
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
+ G I+ MV + GI +P +T
Sbjct: 120 GYKNIGQYHKAIRVMGDMVKE-GI--EPTQFT 148
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/611 (39%), Positives = 355/611 (58%), Gaps = 45/611 (7%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M V+ V+WNS+++G + G + A +LFD++P+ VVS+ M++ S V A
Sbjct: 92 MPVRDVVSWNSMISGCV-ECGDMNTAVKLFDEMPERSVVSWTAMVNG-CFRSGKVDQAER 149
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F ++P+KDTA+WN+M+ G++Q + A LF MP KN +SW+ MI G + + +A
Sbjct: 150 LFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEA 209
Query: 121 VELFK----------VAPVKSVVAWTA-----------------------------MISG 141
++LFK P V+ A +I+
Sbjct: 210 LDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITF 269
Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
Y ++ + K+FDE + + W A+++GY N ED L + M+ I PN S+
Sbjct: 270 YANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTF 329
Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
+S L CS L +L GK++H + K L D L+ MY G++ DA +F++I +
Sbjct: 330 ASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFK 389
Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
K +V+WN++I G AQHG+G+ A +F +M +PD ITF LL AC+H G ++ G +
Sbjct: 390 KSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKL 449
Query: 322 FDSMVNDYG-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
F M + I K HYTCMVD+LGR GKL EA +LI++M KP ++ LLSACR+H
Sbjct: 450 FYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMH 509
Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
+D E AA +FNL+ ++A YV L+NIYA+ +W +V+++R+ MK+N ++K PG S
Sbjct: 510 SDVDRGEKAAAAIFNLDSKSSAA-YVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSS 568
Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
W+ + HEF SGD+ P I+EKL+ L +++K GY PD ALH V +E KE++L
Sbjct: 569 WVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEML 626
Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
+HSE+LAIAFGLI G+ + V KNLRVC DCH K IS + REI++RD RFHHF
Sbjct: 627 WYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHF 686
Query: 561 KDGTCSCGDYW 571
K+GTCSCGDYW
Sbjct: 687 KNGTCSCGDYW 697
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 202/379 (53%), Gaps = 5/379 (1%)
Query: 22 KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
++ +A+E+F+++P P V Y M++ S+ +V A + F +P++D SWN+MISG V
Sbjct: 50 RIDEAREVFNQVPSPHVSLYTKMITG-YTRSNRLVDALNLFDEMPVRDVVSWNSMISGCV 108
Query: 82 QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
+ +M A LF MPE++ VSW+AM++G G++D+A LF PVK AW +M+ G
Sbjct: 109 ECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHG 168
Query: 142 YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
Y++FGKVD A KLF +MP KN+++W MI G +N + + L L + M+ I+ +
Sbjct: 169 YLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPF 228
Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
+ V+ C++ + +G QVH L+ K + LI+ Y C + D+ K+F E
Sbjct: 229 TCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVH 288
Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
+ V W A++SGY+ + K E AL +F M + P+ TF + L +C+ G +D G +
Sbjct: 289 EQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEM 348
Query: 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381
V G+ +V + +G + +AV + K+ FK + +++ C H
Sbjct: 349 HGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHG 406
Query: 382 RLDLAE--FAAMNLFNLNP 398
R A F M N P
Sbjct: 407 RGKWAFVIFGQMIRLNKEP 425
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/554 (40%), Positives = 340/554 (61%), Gaps = 14/554 (2%)
Query: 29 LFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
+FD++PQ S + + +CI+ D V F+ +P KD S+NT+I+G+ Q
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV--FEVMPRKDVVSYNTIIAGYAQSGM 222
Query: 86 MAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTA 137
A R++ + +S + S+++ + E + K E+ K V ++
Sbjct: 223 YEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSS 282
Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
++ Y K +++ +E++F + ++ ++WN+++AGYV+N + L+L R M+ ++P
Sbjct: 283 LVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPG 342
Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
A + SSV+ C+HL++L LGKQ+H V + + + L+ MY KCG+++ A K+F
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402
Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
+ D V+W A+I G+A HG G +A+ LF++MK +G+KP+ + FVA+L AC+H GLVD
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462
Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
YF+SM YG+ + +HY + DLLGRAGKL EA + I KM +P +++ TLLS+C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522
Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
VHK L+LAE A +F ++ N G YV + N+YA+ +W ++A++RL M++ + K P
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSEN-MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP 581
Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
SWIE+ H F SGDR HP + I+E LK + ++M+ GYV D LH V EE K
Sbjct: 582 ACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKR 641
Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
+LL HSE+LA+AFG+I GT IRV KN+R+C DCH A K+IS I +REIIVRD +RF
Sbjct: 642 ELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRF 701
Query: 558 HHFKDGTCSCGDYW 571
HHF G CSCGDYW
Sbjct: 702 HHFNRGNCSCGDYW 715
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 144/365 (39%), Gaps = 76/365 (20%)
Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
S + + +IS Y + A LF + + ++ W ++I + + S L M
Sbjct: 38 SHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMR 97
Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK----- 245
G P+ + SVL C+ + L+ G+ VH + + + D L++MY K
Sbjct: 98 ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMG 157
Query: 246 ------------------CGD-------------LEDACKLFLEIQRKDVVTWNAMISGY 274
GD ++ ++F + RKDVV++N +I+GY
Sbjct: 158 SKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGY 217
Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ--- 320
AQ G E ALR+ +M +KPDS T ++L + H ++ GI
Sbjct: 218 AQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDV 277
Query: 321 YF-DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKM--- 361
Y S+V+ Y +A+ + + +V + G+ EA+ L ++M
Sbjct: 278 YIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTA 337
Query: 362 PFKPQPAIFGTLLSAC----RVHKRLDLAEFAAMNLFNLNPANAAGC---YVQLANIYAA 414
KP F +++ AC +H L + F N A+ Y + NI AA
Sbjct: 338 KVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAA 397
Query: 415 MKKWD 419
K +D
Sbjct: 398 RKIFD 402
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 31/277 (11%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSY-NIMLSCILLNS-------DD 54
++WNS++AG+ Q G+ +A LF ++ +P V++ +++ +C L +
Sbjct: 309 ISWNSLVAGYV-QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367
Query: 55 VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
V F + I + ++ + + N+ AR +F M + VSW+A+I G+
Sbjct: 368 YVLRGGFGSNIFIA-----SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALH 422
Query: 115 GQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGKVDLAEKLFDEMP-----TKNLVT 165
G +AV LF+ + V VA+ A+++ G VD A F+ M + L
Sbjct: 423 GHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEH 482
Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
+ A+ E+ + M + P S S++L CS +L+L ++V + +F
Sbjct: 483 YAAVADLLGRAGKLEEAYNFISKMC---VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF 539
Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
++ A + +MY G ++ KL L +++K
Sbjct: 540 TVD-SENMGAYVLMCNMYASNGRWKEMAKLRLRMRKK 575
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 209 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 268
+ + S KQ+H ++ T+A + +IS+Y L +A LF ++ V+ W
Sbjct: 16 TRIKSKSQAKQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74
Query: 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
++I + KAL F +M+ G PD F ++L +C
Sbjct: 75 SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/611 (37%), Positives = 356/611 (58%), Gaps = 51/611 (8%)
Query: 9 WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
WN+++ G+++ +DA ++ + PD ++ +L S + F Q
Sbjct: 87 WNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145
Query: 65 LPI---KDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIECGQLDK 119
+ D N +I+ + + + + AR +F L +PE+ VSW+A++S Y + G+ +
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205
Query: 120 AVELFK-----------VAPVKSVVAWT----------------------------AMIS 140
A+E+F VA V + A+T ++ +
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265
Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
Y K G+V A+ LFD+M + NL+ WNAMI+GY +N +A + + + MI +RP+ S
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325
Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260
++S + C+ + SL+ + +++ V +S D + LI M+ KCG +E A +F
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
+DVV W+AMI GY HG+ +A+ L+ M+ G+ P+ +TF+ LL+ACNH+G+V G
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380
+F+ M D+ I + HY C++DLLGRAG L +A ++IK MP +P ++G LLSAC+ H
Sbjct: 446 FFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440
+ ++L E+AA LF+++P+N G YVQL+N+YAA + WD VA +R+ MKE + K G S
Sbjct: 505 RHVELGEYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563
Query: 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 500
W+EV + FR GD+ HP I +++ +E R+K G+V + + +LH + +E E+ L
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623
Query: 501 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 560
HSE++AIA+GLI P GTP+R+ KNLR C +CH ATK IS + REI+VRDT RFHHF
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHF 683
Query: 561 KDGTCSCGDYW 571
KDG CSCGDYW
Sbjct: 684 KDGVCSCGDYW 694
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 4/243 (1%)
Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
T +I FG + A ++FD++P + WNA+I GY N+ +D L + M +
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
P++ + +L CS LS LQ+G+ VH VF+ D LI++Y KC L A +
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176
Query: 256 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
F L + + +V+W A++S YAQ+G+ +AL +F +M+ +KPD + V++L A
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236
Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
+ G S+V G+ +PD + + + G++ A L KM P ++ +
Sbjct: 237 DLKQGRSIHASVVK-MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAM 294
Query: 374 LSA 376
+S
Sbjct: 295 ISG 297
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
S +S++ +H + L KQ+H + L +T LI GD+ A ++F +
Sbjct: 22 SFYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78
Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
+ R + WNA+I GY+++ + AL ++ M+ + PDS TF LL AC+ + +G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
++ + V G A ++ L + +L A + + +P P+ I
Sbjct: 139 -RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTI 187
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 107/283 (37%), Gaps = 67/283 (23%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + WN++++G+AK G ++A ++F ++ DV
Sbjct: 283 MKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINKDVR--------------------- 320
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQ 116
DT S + IS Q ++ +AR ++ + + SA+I + +CG
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
++ A +F + VV W+AMI GY G+
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR----------------------------- 404
Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
A + + L R M G+ PN + +L+ C+H ++ G + +
Sbjct: 405 --AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHY 462
Query: 237 TPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQH 277
+I + + G L+ A ++ + +Q V W A++S +H
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKH 504
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/511 (43%), Positives = 313/511 (61%), Gaps = 7/511 (1%)
Query: 67 IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
+ + SW MISGF+Q +A DLF M K N ++S +++ + +
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 418
Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
+ K +S TA++ Y+K GKV+ A K+F + K++V W+AM+AGY + E
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478
Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241
+K+ + GI+PN + SS+L C+ +S+ GKQ H KS L + L++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 242 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301
MY K G++E A ++F + KD+V+WN+MISGYAQHG+ KAL +F +MK +K D +T
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
F+ + AC HAGLV+ G +YFD MV D IA +H +CMVDL RAG+L +A+ +I+ M
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658
Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
P I+ T+L+ACRVHK+ +L AA + + P ++A YV L+N+YA W +
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA-YVLLSNMYAESGDWQER 717
Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
A++R M E NV K PGYSWIEV + F +GDR HP I+ KL++L R+K GY
Sbjct: 718 AKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYE 777
Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
PD + L + +E KE +L HSE+LAIAFGLI P G+P+ + KNLRVCGDCH K I
Sbjct: 778 PDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLI 837
Query: 542 SAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 571
+ IE+REI+VRD+ RFHHF DG CSCGD+W
Sbjct: 838 AKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 58/350 (16%)
Query: 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF---DFFQRLP- 66
S+L GF++ G+ ++A+ LF I + + + C + +S V+A + F R
Sbjct: 63 SLLFGFSRD-GRTQEAKRLFLNIHR-----LGMEMDCSIFSSVLKVSATLCDELFGRQLH 116
Query: 67 --------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
+ D + +++ +++ N R +F M E+N V+W+ +ISGY D
Sbjct: 117 CQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMND 176
Query: 119 KAVELF--------------------------------KVAPV-------KSVVAWTAMI 139
+ + LF +V V K++ ++I
Sbjct: 177 EVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLI 236
Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
+ Y+K G V A LFD+ K++VTWN+MI+GY N + L + M +R + S
Sbjct: 237 NLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSES 296
Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
S +SV+ C++L L+ +Q+H V K D T L+ Y KC + DA +LF EI
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356
Query: 260 Q-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308
+VV+W AMISG+ Q+ E+A+ LF +MK +G++P+ T+ +L A
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 162/333 (48%), Gaps = 28/333 (8%)
Query: 42 NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKN 100
N+ L C +V A F + +K +WN+MISG+ +A +F +M
Sbjct: 237 NLYLKC-----GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291
Query: 101 SVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVAW-----TAMISGYMKFGKVDLAEK 153
+S S+ S C L + E + VK + TA++ Y K + A +
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 154 LFDEMP-TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212
LF E+ N+V+W AMI+G+++N E+ + L M G+RPN + S +L +S
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411
Query: 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
+VH V K+ + +T T L+ Y K G +E+A K+F I KD+V W+AM++
Sbjct: 412 P----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Query: 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL-VDLGIQYFDSMVNDYGI 331
GYAQ G+ E A+++F ++ G+KP+ TF ++L C + G Q+ + + I
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF-----HGFAI 522
Query: 332 AAKPDHYTC----MVDLLGRAGKLVEAVDLIKK 360
++ D C ++ + + G + A ++ K+
Sbjct: 523 KSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 555
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 9/320 (2%)
Query: 50 LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSW 104
++S + A + F + P +D S+ +++ GF + +A+ LFL M S+
Sbjct: 38 VSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97
Query: 105 SAMISGYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
S + C +L + K + V T+++ YMK K+FDEM +
Sbjct: 98 SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157
Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
N+VTW +I+GY NS ++ L L M G +PN+ + ++ L + G QVH
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 217
Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
+V K+ L K LI++Y KCG++ A LF + + K VVTWN+MISGYA +G
Sbjct: 218 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 277
Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
+AL +F M+ ++ +F +++ C + + Q S+V YG + T +
Sbjct: 278 EALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK-YGFLFDQNIRTAL 336
Query: 342 VDLLGRAGKLVEAVDLIKKM 361
+ + +++A+ L K++
Sbjct: 337 MVAYSKCTAMLDALRLFKEI 356
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 1/214 (0%)
Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
A LFD+ P ++ ++ +++ G+ + ++ +L + LG+ + S SSVL +
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
L G+Q+H K D + T L+ Y K + +D K+F E++ ++VVTW +
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
ISGYA++ ++ L LF +M++EG +P+S TF A L G+ G+Q +V + G
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-G 224
Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
+ +++L + G + +A L K K
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 150/364 (41%), Gaps = 108/364 (29%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSD----- 53
K V W+++LAG+A Q G+ + A ++F ++ + P+ +++ +L+ C N+
Sbjct: 457 KDIVAWSAMLAGYA-QTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515
Query: 54 -----------------------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
++ +A + F+R KD SWN+MISG+ Q
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575
Query: 85 NMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF-------KVAPVKSVV 133
KA D+F M ++ + V++ + + G +++ + F K+AP K
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE-- 633
Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
+ M+ Y + G+++ A K+ + MP
Sbjct: 634 HNSCMVDLYSRAGQLEKAMKVIENMPN--------------------------------- 660
Query: 194 IRPNASSL-SSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
P S++ ++L C +LG+ +++ P +D+ A L +MY + GD ++
Sbjct: 661 --PAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP--EDSAAYVLLSNMYAESGDWQE 716
Query: 252 ACKLFLEIQRKDV-----VTW-------NAMISGYAQHG-KGEKALRLFD---KMKDEGM 295
K+ + ++V +W + ++G H K + ++L D ++KD G
Sbjct: 717 RAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGY 776
Query: 296 KPDS 299
+PD+
Sbjct: 777 EPDT 780
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/549 (41%), Positives = 320/549 (58%), Gaps = 41/549 (7%)
Query: 62 FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
F L ++T +N+++ G + + A LF M EK+SVSW+AMI G + G +A+
Sbjct: 197 FYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAI 255
Query: 122 ELFKVAPVKS---------------------------------------VVAWTAMISGY 142
E F+ V+ + +A+I Y
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315
Query: 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202
K + A+ +FD M KN+V+W AM+ GY + AE+ +K+ M GI P+ +L
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375
Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
+ C+++SSL+ G Q H S L T L+++Y KCGD++D+ +LF E+ +
Sbjct: 376 QAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435
Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322
D V+W AM+S YAQ G+ + ++LFDKM G+KPD +T ++ AC+ AGLV+ G +YF
Sbjct: 436 DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495
Query: 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382
M ++YGI HY+CM+DL R+G+L EA+ I MPF P + TLLSACR
Sbjct: 496 KLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555
Query: 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442
L++ ++AA +L L+P + AG Y L++IYA+ KWD VA++R M+E NV K PG SWI
Sbjct: 556 LEIGKWAAESLIELDPHHPAG-YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614
Query: 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 502
+ +H F + D P L I+ KL+EL ++ GY PD F H V E VK ++L +
Sbjct: 615 KWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNY 674
Query: 503 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 562
HSE+LAIAFGLI VP G PIRV KNLRVC DCH ATK+IS++ REI+VRD RFH FKD
Sbjct: 675 HSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734
Query: 563 GTCSCGDYW 571
GTCSCGD+W
Sbjct: 735 GTCSCGDFW 743
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 197/446 (44%), Gaps = 78/446 (17%)
Query: 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD-FFQR 64
T +N+++ +A + A+ +FD+IPQP++ S+N +L + + +++ + F++
Sbjct: 41 TFLYNNIVHAYALMKSSTY-ARRVFDRIPQPNLFSWNNLL--LAYSKAGLISEMESTFEK 97
Query: 65 LPIKDTASWNTMISGFVQKKNMAKA--------RDL-----------FLAMPEKNS-VSW 104
LP +D +WN +I G+ + A RD L + N VS
Sbjct: 98 LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157
Query: 105 SAMISG--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
I G Y G + A ++F ++ V + +++ G +
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
G ++ A +LF M K+ V+W AMI G +N A++ ++ R M G++ + SV
Sbjct: 218 CGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSV 276
Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
L C L ++ GKQ+H + ++ + LI MYCKC L A +F +++K+V
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336
Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF-- 322
V+W AM+ GY Q G+ E+A+++F M+ G+ PD T + AC + ++ G Q+
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGK 396
Query: 323 -------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEA 354
+S+V YG D +T MV + G+ VE
Sbjct: 397 AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVET 456
Query: 355 VDLIKKM---PFKPQPAIFGTLLSAC 377
+ L KM KP ++SAC
Sbjct: 457 IQLFDKMVQHGLKPDGVTLTGVISAC 482
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 154/356 (43%), Gaps = 43/356 (12%)
Query: 60 DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
+ + LP +T +N ++ + K+ AR +F +P+ N SW+ ++ Y + G + +
Sbjct: 31 NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP---TKNL--VTWNAMIAGYV 174
F+ P + V W +I GY G V A K ++ M + NL VT M+
Sbjct: 91 MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSS 150
Query: 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234
N G ++ +I LG S +L +++ + K+ VF ++T
Sbjct: 151 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK----VFYGLDDRNTV 206
Query: 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
L+ CG +EDA +LF ++ KD V+W AMI G AQ+G ++A+ F +MK +G
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 295 MKPDSITFVALLLACNHAGLVDLGIQ--------------YFDSMVNDYGIAAKPDHY-- 338
+K D F ++L AC G ++ G Q Y S + D K HY
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK 325
Query: 339 --------------TCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 377
T MV G+ G+ EAV + +++ P G +SAC
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
MNV+ V+W ++++ +A Q G+ + +LFDK+ Q PD V+ ++S + V
Sbjct: 432 MNVRDAVSWTAMVSAYA-QFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC-SRAGLVE 489
Query: 57 AAFDFFQRLP-----IKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISG 110
+F+ + + ++ MI F + + +A MP +++ W+ ++S
Sbjct: 490 KGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549
Query: 111 YIECGQLD----KAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163
G L+ A L ++ P +T + S Y GK D +L M KN+
Sbjct: 550 CRNKGNLEIGKWAAESLIELDP-HHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
K +H + ++ +T ++ Y A ++F I + ++ +WN ++ Y++
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
G + F+K+ D D +T+ L+ + +GLV ++ +++M+ D+
Sbjct: 86 GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDF 133
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/615 (39%), Positives = 350/615 (56%), Gaps = 46/615 (7%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------- 53
M V+ +WN++++G+ Q G K+A L + + D V+ +LS D
Sbjct: 211 MPVRDMGSWNAMISGYC-QSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTI 269
Query: 54 --------------------DVVAAF-------DFFQRLPIKDTASWNTMISGFVQKKNM 86
D+ A F F R+ ++D SWN++I + +
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329
Query: 87 AKARDLFLAM------PEKNS-VSWSAMIS--GYIECGQLDKAVELFKVAPVKSVVAWTA 137
+A LF M P+ + +S ++++S G I + + L K ++ + A
Sbjct: 330 LRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNA 389
Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRP 196
++ Y K G VD A +F+ +P ++++WN +I+GY +N +A + +++ +M G I
Sbjct: 390 VVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAA 449
Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
N + SVL CS +L+ G ++H + K+ L D +T L MY KCG LEDA LF
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF 509
Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
+I R + V WN +I+ + HG GEKA+ LF +M DEG+KPD ITFV LL AC+H+GLVD
Sbjct: 510 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 569
Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
G F+ M DYGI HY CMVD+ GRAG+L A+ IK M +P +I+G LLSA
Sbjct: 570 EGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSA 629
Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
CRVH +DL + A+ +LF + P + G +V L+N+YA+ KW+ V IR + K
Sbjct: 630 CRVHGNVDLGKIASEHLFEVEPEH-VGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688
Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 496
PG+S +EV V F +G++ HP ++ +L L+ ++K+ GYVPD F L V ++ K
Sbjct: 689 PGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEK 748
Query: 497 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 556
E +L+ HSE+LAIAF LI P T IR+FKNLRVCGDCH TK+IS I +REIIVRD+ R
Sbjct: 749 EHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 808
Query: 557 FHHFKDGTCSCGDYW 571
FHHFK+G CSCGDYW
Sbjct: 809 FHHFKNGVCSCGDYW 823
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 160/308 (51%), Gaps = 7/308 (2%)
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F +P++D SWN MISG+ Q N +A L + +SV+ +++S E G ++
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG 266
Query: 121 VEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176
V + K + +I Y +FG++ +K+FD M ++L++WN++I Y N
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-KSPLCKDTTA 235
+ L + M I+P+ +L S+ S L ++ + V K +D T
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI 386
Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG- 294
++ MY K G ++ A +F + DV++WN +ISGYAQ+G +A+ +++ M++EG
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGE 446
Query: 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
+ + T+V++L AC+ AG + G++ ++ + G+ T + D+ G+ G+L +A
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDA 505
Query: 355 VDLIKKMP 362
+ L ++P
Sbjct: 506 LSLFYQIP 513
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%)
Query: 19 QRGKLKDAQELFDKIPQPDVVSYNIM-LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
Q K A+ + K Q +S ++ L C L N FD Q +D +WN MI
Sbjct: 68 QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQN---RDVYAWNLMI 124
Query: 78 SGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKS 131
SG+ + N ++ F + + + S C + ++ K +
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWD 184
Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
V ++I Y ++ V A LFDEMP +++ +WNAMI+GY ++ A++ L L
Sbjct: 185 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN---- 240
Query: 192 LGIRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
G+R ++ ++ S+L C+ G +H K L + LI +Y + G L
Sbjct: 241 -GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299
Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
D K+F + +D+++WN++I Y + + +A+ LF +M+ ++PD +T ++L
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 9/234 (3%)
Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
+++V +++ Y G V LA FD + +++ WN MI+GY + + ++ +
Sbjct: 83 IQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 142
Query: 189 -MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
M+ G+ P+ + SVL C + G ++H L K D LI +Y +
Sbjct: 143 FMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYK 199
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
+ +A LF E+ +D+ +WNAMISGY Q G ++AL L + ++ DS+T V+LL
Sbjct: 200 AVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLS 255
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
AC AG + G+ S +G+ ++ ++DL G+L + + +M
Sbjct: 256 ACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
+ ++LQ K +H + S ++ L+++YC G++ A F IQ +DV WN
Sbjct: 63 YCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNL 122
Query: 270 MISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLAC 309
MISGY + G + +R F M G+ PD TF ++L AC
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/534 (41%), Positives = 316/534 (59%), Gaps = 39/534 (7%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------KVA 127
N +I+ +V+ + A LF MP++N +SW+ MIS Y +C KA+EL V
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 128 P------------------------------VKSVVAWTAMISGYMKFGKVDLAEKLFDE 157
P V +A+I + K G+ + A +FDE
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219
Query: 158 MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 217
M T + + WN++I G+ +NS ++ L+L + M G ++L+SVL C+ L+ L+LG
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
Q H + K +D L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ+
Sbjct: 280 MQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337
Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
G ++AL+LF++MK G KP+ IT V +L AC+HAGL++ G YF SM YGI +H
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
Y CM+DLLG+AGKL +AV L+ +M +P + TLL ACRV + + LAE+AA + L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457
Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
P +A G Y L+NIYA +KWD V IR M++ + K PG SWIEV +H F GD
Sbjct: 458 PEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNS 516
Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
HP++V + +KL +L R+ GYVP+ F L + E E L HSEKLA+AFGL+ +P
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLP 576
Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
+ IR+ KNLR+CGDCH K S +E R I++RD R+HHF+DG CSCGDYW
Sbjct: 577 IEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 47/269 (17%)
Query: 16 FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTA 71
FAK G+ +DA +FD++ D + +N ++ NS V A + F+R+ I + A
Sbjct: 204 FAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGFIAEQA 261
Query: 72 SWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
+ +++ + + + +++ + +A++ Y +CG L+ A+ +F
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321
Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189
+ V+ W+ MISG +N ++++ LKL M
Sbjct: 322 RDVITWSTMISG-------------------------------LAQNGYSQEALKLFERM 350
Query: 190 IGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCK 245
G +PN ++ VL CSH L+ G + + +L P+ + + L+ K
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLG---K 407
Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISG 273
G L+DA KL E++ D VTW ++
Sbjct: 408 AGKLDDAVKLLNEMECEPDAVTWRTLLGA 436
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 51/212 (24%)
Query: 9 WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------------------- 49
WNS++ GFA Q + A ELF ++ + ++ L+ +L
Sbjct: 228 WNSIIGGFA-QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286
Query: 50 --------LNS---------DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
LN+ + A F ++ +D +W+TMISG Q +A L
Sbjct: 287 VKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 346
Query: 93 FLAMPEKNS---------VSWSAMISGYIECG--QLDKAVELFKVAPVKSVVAWTAMISG 141
F M + V ++ +G +E G +L+ + PV+ + MI
Sbjct: 347 FERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDL 404
Query: 142 YMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
K GK+D A KL +EM + + VTW ++
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 319/542 (58%), Gaps = 22/542 (4%)
Query: 51 NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
N V++ F + + WN MI+G+ Q ++ +A LF+ M E NS + +
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409
Query: 106 AMISGYIECGQLDK--AVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK 161
++ + G + A+ F K + ++ Y + GK+D+A ++F +M +
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469
Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVLLGCSH 210
+LVTWN MI GYV + ED L LL M L ++PN+ +L ++L C+
Sbjct: 470 DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAA 529
Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
LS+L GK++H K+ L D + L+ MY KCG L+ + K+F +I +K+V+TWN +
Sbjct: 530 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVI 589
Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330
I Y HG G++A+ L M +G+KP+ +TF+++ AC+H+G+VD G++ F M DYG
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649
Query: 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLDLAEFA 389
+ DHY C+VDLLGRAG++ EA L+ MP A + +LL A R+H L++ E A
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709
Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
A NL L P N A YV LANIY++ WD +R +MKE V K PG SWIE G VH
Sbjct: 710 AQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768
Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
+F +GD HP+ + L+ L +RM+ GYVPD LH V E+ KE LL HSEKLAI
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828
Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
AFG++ GT IRV KNLRVC DCH ATK+IS I REII+RD RFH FK+GTCSCGD
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888
Query: 570 YW 571
YW
Sbjct: 889 YW 890
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 15/321 (4%)
Query: 54 DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYI 112
D A + F R+ ++ SWN++IS + A + F M ++N S ++S
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207
Query: 113 ECGQL--------DKAVELF--KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
C L K V + + + S + T +++ Y K GK+ ++ L ++
Sbjct: 208 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRD 266
Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
LVTWN +++ +N + L+ LR M+ G+ P+ ++SSVL CSHL L+ GK++H
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326
Query: 223 LVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
K+ L +++ + L+ MYC C + ++F + + + WNAMI+GY+Q+ +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386
Query: 282 KALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340
+AL LF M++ G+ +S T ++ AC +G + V G+
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNT 445
Query: 341 MVDLLGRAGKLVEAVDLIKKM 361
++D+ R GK+ A+ + KM
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKM 466
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 4/193 (2%)
Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
V SV +++ Y K G K+FD + +N V+WN++I+ E L+ R
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189
Query: 189 MIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
M+ + P++ +L SV+ CS+L L +GKQVH + ++ + L++MY K
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGK 248
Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
G L + L +D+VTWN ++S Q+ + +AL +M EG++PD T ++
Sbjct: 249 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 306 LLACNHAGLVDLG 318
L AC+H ++ G
Sbjct: 309 LPACSHLEMLRTG 321
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 247
MI LGI+P+ + ++L + L ++LGKQ+H V+K D+ T L+++Y KCG
Sbjct: 88 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
D K+F I ++ V+WN++IS K E AL F M DE ++P S T V+++
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 364
AC++ + + G+ V+ YG+ + +V + G+ GKL + L+ +
Sbjct: 208 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265
Query: 365 PQPAIFGTLLSACRVHKRLDLAEF 388
L S C+ + L+ E+
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEY 289
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/376 (21%), Positives = 164/376 (43%), Gaps = 55/376 (14%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
N+++A + K GKL ++ L D+V++N +LS + N + ++ A ++ + + ++
Sbjct: 240 NTLVAMYGKL-GKLASSKVLLGSFGGRDLVTWNTVLSSLCQN-EQLLEALEYLREMVLEG 297
Query: 69 ---DTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLDKA 120
D + ++++ + + ++L ++NS SA++ Y C Q+
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
+F + + W AM IAGY +N +
Sbjct: 358 RRVFDGMFDRKIGLWNAM-------------------------------IAGYSQNEHDK 386
Query: 181 DGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239
+ L L + M G+ N+++++ V+ C + + +H V K L +D L
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446
Query: 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD------- 292
+ MY + G ++ A ++F +++ +D+VTWN MI+GY E AL L KM++
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506
Query: 293 ----EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
+KP+SIT + +L +C + G + + + +A + +VD+ +
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKC 565
Query: 349 GKLVEAVDLIKKMPFK 364
G L + + ++P K
Sbjct: 566 GCLQMSRKVFDQIPQK 581
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 51/219 (23%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK---------- 68
GK+ A +F K+ D+V++N M++ + + +D + Q L K
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 69 --DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAV 121
++ + T++ +AK +++ A KN+++ SA++ Y +CG L +
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIH-AYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572
Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
++F P K+V+ TWN +I Y + ++
Sbjct: 573 KVFDQIPQKNVI-------------------------------TWNVIIMAYGMHGNGQE 601
Query: 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220
+ LLRMM+ G++PN + SV CSH + G ++
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 105/242 (43%), Gaps = 36/242 (14%)
Query: 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
N+ T V S L + G L+ ++++FD+IPQ +V+++N+++ ++ + A D
Sbjct: 547 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG-QEAIDL 605
Query: 62 FQRLPIKDTASWN-TMISGFVQKKNMAKA----RDLFLAMP----EKNSVSWSAMISGYI 112
+ + ++ T IS F + R ++ P E +S ++ ++
Sbjct: 606 LRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLG 665
Query: 113 ECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170
G++ +A +L + P AW++++ +++ E+ +NL+ +
Sbjct: 666 RAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIG-----EIAAQNLIQLEPNV 720
Query: 171 AGY---VENSWAEDGL-----KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
A + + N ++ GL ++ R M G+R GCS ++ G +VH+
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP--------GCSW---IEHGDEVHK 769
Query: 223 LV 224
V
Sbjct: 770 FV 771
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/576 (38%), Positives = 331/576 (57%), Gaps = 42/576 (7%)
Query: 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
P +V +N +L + +V A F +P +D SWN M++G+ + + +AR LF
Sbjct: 118 PGIVIWNRLLR-MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176
Query: 96 MPEKNSVSWSAMISGYIECGQLDKAVELF------------------------------- 124
M EK+S SW+AM++GY++ Q ++A+ L+
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236
Query: 125 ---------KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
+ V W++++ Y K G +D A +FD++ K++V+W +MI Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
+S +G L ++G RPN + + VL C+ L++ +LGKQVH + + + A
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA 356
Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
+ L+ MY KCG++E A + + D+V+W ++I G AQ+G+ ++AL+ FD + G
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGT 416
Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
KPD +TFV +L AC HAGLV+ G+++F S+ + ++ DHYTC+VDLL R+G+ +
Sbjct: 417 KPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLK 476
Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
+I +MP KP ++ ++L C + +DLAE AA LF + P N YV +ANIYAA
Sbjct: 477 SVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV-TYVTMANIYAAA 535
Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
KW++ ++R M+E V K PG SW E+ H F + D HP I E L+EL K+M
Sbjct: 536 GKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKM 595
Query: 476 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
K GYVP LH V +E KE+ L++HSEKLA+AF ++ GT I+VFKNLR C DCH
Sbjct: 596 KEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCH 655
Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
A K+IS I KR+I VRD+TRFH F++G CSCGDYW
Sbjct: 656 GAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 42/294 (14%)
Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-- 186
V +V W ++ Y K G + A K+FDEMP ++L +WN M+ GY E E+ KL
Sbjct: 117 VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176
Query: 187 ----------RMMIGL--------------------GIRPNASSLSSVLLGCSHLSSLQL 216
M+ G RPN ++S + + + ++
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236
Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
GK++H + ++ L D + L+ MY KCG +++A +F +I KDVV+W +MI Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV----NDYGIA 332
+ + LF ++ +P+ TF +L AC +LG Q M + Y A
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA 356
Query: 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 386
+ + +VD+ + G + A ++ P KP + +L+ C + + D A
Sbjct: 357 S-----SSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEA 404
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 7/128 (5%)
Query: 182 GLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 238
G KLLR ++G +P AS+ +++ CS +L+ GK+VH+ + S
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125
Query: 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298
L+ MY KCG L DA K+F E+ +D+ +WN M++GYA+ G E+A +LFD+M ++ D
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK----D 181
Query: 299 SITFVALL 306
S ++ A++
Sbjct: 182 SYSWTAMV 189
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/561 (41%), Positives = 334/561 (59%), Gaps = 23/561 (4%)
Query: 26 AQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASWN-------- 74
AQ +FD +PD +N+M+ SC SD+ + +QR+ + +A N
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSC----SDEPERSLLLYQRM-LCSSAPHNAYTFPSLL 122
Query: 75 ---TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
+ +S F ++ A+ L E + + +++I+ Y G A LF P
Sbjct: 123 KACSNLSAF-EETTQIHAQITKLGY-ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPD 180
Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
V+W ++I GY+K GK+D+A LF +M KN ++W MI+GYV+ ++ L+L M
Sbjct: 181 DVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQN 240
Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
+ P+ SL++ L C+ L +L+ GK +H + K+ + D+ LI MY KCG++E+
Sbjct: 241 SDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEE 300
Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
A ++F I++K V W A+ISGYA HG G +A+ F +M+ G+KP+ ITF A+L AC++
Sbjct: 301 ALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSY 360
Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
GLV+ G F SM DY + +HY C+VDLLGRAG L EA I++MP KP I+G
Sbjct: 361 TGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWG 420
Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
LL ACR+HK ++L E L ++P + G YV ANI+A KKWD A R MKE
Sbjct: 421 ALLKACRIHKNIELGEEIGEILIAIDPYH-GGRYVHKANIHAMDKKWDKAAETRRLMKEQ 479
Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHA 490
V K+PG S I + HEF +GDR HPE+ I K + + ++++ GYVP+L E L
Sbjct: 480 GVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDL 539
Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
V ++ +E ++ HSEKLAI +GLIK GT IR+ KNLRVC DCH+ TK IS I KR+I+
Sbjct: 540 VDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIV 599
Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
+RD TRFHHF+DG CSCGDYW
Sbjct: 600 MRDRTRFHHFRDGKCSCGDYW 620
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 48/261 (18%)
Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
+ N S L CS L KQ+H + K+ L +D+ A+T +S +C
Sbjct: 7 SFSLEHNLYETMSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLS-FCISSTSS 62
Query: 251 D----ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
D A +F R D WN MI G++ + E++L L+ +M ++ TF +LL
Sbjct: 63 DFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLL 122
Query: 307 LACN-----------HAGLVDLG----IQYFDSMVNDYGIAA-------------KPD-- 336
AC+ HA + LG + +S++N Y + +PD
Sbjct: 123 KACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182
Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD---LAEFAAMNL 393
+ ++ +AGK+ A+ L +KM K AI T + + V ++ L F M
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEK--NAISWTTMISGYVQADMNKEALQLFHEMQN 240
Query: 394 FNLNPANAAGCYVQLANIYAA 414
++ P N V LAN +A
Sbjct: 241 SDVEPDN-----VSLANALSA 256
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/569 (39%), Positives = 335/569 (58%), Gaps = 30/569 (5%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
V+WN +L+GF + G K+A +F KI + +S +L + D
Sbjct: 218 VSWNGILSGFNRS-GYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGD------------ 264
Query: 67 IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
+ + +I G+V K+ + K + + SAMI Y + G + + LF
Sbjct: 265 -SEMLNMGRLIHGYVIKQGLLKDKCVI-----------SAMIDMYGKSGHVYGIISLFNQ 312
Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVENSWAEDG 182
+ A I+G + G VD A ++F+ + N+V+W ++IAG +N +
Sbjct: 313 FEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEA 372
Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
L+L R M G++PN ++ S+L C ++++L G+ H + L + + LI M
Sbjct: 373 LELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDM 432
Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
Y KCG + + +F + K++V WN++++G++ HGK ++ + +F+ + +KPD I+F
Sbjct: 433 YAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISF 492
Query: 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
+LL AC GL D G +YF M +YGI + +HY+CMV+LLGRAGKL EA DLIK+MP
Sbjct: 493 TSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Query: 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422
F+P ++G LL++CR+ +DLAE AA LF+L P N G YV L+NIYAA W +V
Sbjct: 553 FEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN-PGTYVLLSNIYAAKGMWTEVD 611
Query: 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 482
IR M+ + K PG SWI+V V+ +GD+ HP++ I EK+ E+ K M+ +G+ P
Sbjct: 612 SIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRP 671
Query: 483 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 542
+L+FALH V E+ +EQ+L HSEKLA+ FGL+ P GTP++V KNLR+CGDCH K+IS
Sbjct: 672 NLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFIS 731
Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
+ REI +RDT RFHHFKDG CSCGD+W
Sbjct: 732 SYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 122/238 (51%), Gaps = 7/238 (2%)
Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK---- 161
+M Y+ CG++ A ++F K VV +A++ Y + G ++ ++ EM +
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215
Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
N+V+WN +++G+ + + ++ + + + + LG P+ ++SSVL L +G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
V K L KD ++ +I MY K G + LF + + + NA I+G +++G +
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
KAL +F+ K++ M+ + +++ +++ C G ++ F M KP+H T
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM---QVAGVKPNHVT 390
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 92/176 (52%)
Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
+I+ Y + + A+ + +P + +++++I + + + M G+ P+
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
+ L ++ C+ LS+ ++GKQ+H + S L D + MY +CG + DA K+F
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
+ KDVVT +A++ YA+ G E+ +R+ +M+ G++ + +++ +L N +G
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDV 55
M K V WNS++ GF+ GK K+ +F+ + + PD +S+ +LS C + D
Sbjct: 449 MPTKNLVCWNSLMNGFS-MHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD- 506
Query: 56 VAAFDFFQRLP----IKDT-ASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMIS 109
+ +F+ + IK ++ M++ + + +A DL MP E +S W A+++
Sbjct: 507 -EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLN 565
Query: 110 GYIECGQLDKAVELFKVAPVK 130
C +L V+L ++A K
Sbjct: 566 ---SC-RLQNNVDLAEIAAEK 582
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/594 (39%), Positives = 336/594 (56%), Gaps = 74/594 (12%)
Query: 19 QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
Q G+L+DA ++FDK P DVV S+ +I
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVV--------------------------------SYTALIK 208
Query: 79 GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPVKSV 132
G+ + + A+ LF +P K+ VSW+AMISGY E G +A+ELFK V P +S
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268
Query: 133 VA--------------------W-------------TAMISGYMKFGKVDLAEKLFDEMP 159
+ W A+I Y K G+++ A LF+ +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
K++++WN +I GY + ++ L L + M+ G PN ++ S+L C+HL ++ +G+
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 220 VHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
+H + K + ++ T LI MY KCGD+E A ++F I K + +WNAMI G+A H
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
G+ + + LF +M+ G++PD ITFV LL AC+H+G++DLG F +M DY + K +H
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508
Query: 338 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397
Y CM+DLLG +G EA ++I M +P I+ +LL AC++H ++L E A NL +
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
P N G YV L+NIYA+ +W++VA+ R + + + K+PG S IE+ +VVHEF GD+
Sbjct: 569 PENP-GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF 627
Query: 458 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
HP I+ L+E+E ++ AG+VPD L + EE KE L HSEKLAIAFGLI
Sbjct: 628 HPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTK 687
Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
GT + + KNLRVC +CH ATK IS I KREII RD TRFHHF+DG CSC DYW
Sbjct: 688 PGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 201/401 (50%), Gaps = 41/401 (10%)
Query: 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA-----------------AFDFFQRL 65
L A +F I +P+++ +N M L+SD V A F F +
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 66 PIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
K A I G V K + DL++ +++IS Y++ G+L+ A ++F
Sbjct: 144 CAKSKAFKEGQQIHGHVLK--LGCDLDLYVH---------TSLISMYVQNGRLEDAHKVF 192
Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
+P + VV++TA+I GY G ++ A+KLFDE+P K++V+WNAMI+GY E ++ L+
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252
Query: 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244
L + M+ +RP+ S++ +V+ C+ S++LG+QVH + + + LI +Y
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312
Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
KCG+LE AC LF + KDV++WN +I GY ++AL LF +M G P+ +T ++
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 372
Query: 305 LLLACNHAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
+L AC H G +D+G Y D + G+ T ++D+ + G + A + +
Sbjct: 373 ILPACAHLGAIDIGRWIHVYIDKRLK--GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 362 PFKPQPA----IFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
K + IFG + R DL F+ M + P
Sbjct: 431 LHKSLSSWNAMIFGFAMHG-RADASFDL--FSRMRKIGIQP 468
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 121/251 (48%), Gaps = 32/251 (12%)
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
F + A +F + NL+ WN M G+ +S LKL MI LG+ PN+ + V
Sbjct: 81 FEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140
Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC----------- 253
L C+ + + G+Q+H V K D T LISMY + G LEDA
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200
Query: 254 --------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
KLF EI KDVV+WNAMISGYA+ G ++AL LF M
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260
Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
++PD T V ++ AC +G ++LG Q ++D+G + ++DL + G+L
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 354 AVDLIKKMPFK 364
A L +++P+K
Sbjct: 320 ACGLFERLPYK 330
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 163/399 (40%), Gaps = 84/399 (21%)
Query: 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSCILLNS----- 52
VK V+WN++++G+A + G K+A ELF + + +V ++ +C S
Sbjct: 228 VKDVVSWNAMISGYA-ETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 286
Query: 53 ------DD----------------------VVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
DD + A F+RLP KD SWNT+I G+
Sbjct: 287 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 346
Query: 85 NMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAVELFKVAPVKSVVA---- 134
+A LF M N V+ +++ G +D + + ++ +K V
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 406
Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
T++I Y K G ++ A ++F+ + K+L +WNAMI G+ + A+ L M +GI
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 466
Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
+P+ + +L CSH L LG+ + + + + +TP + Y DL
Sbjct: 467 QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD------YKMTPKLEHYGCMIDLLGHSG 520
Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
LF E + + M+PD + + +LL AC G
Sbjct: 521 LFKEAEEMINMM---------------------------EMEPDGVIWCSLLKACKMHGN 553
Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
V+LG + ++++ P Y + ++ AG+ E
Sbjct: 554 VELGESFAENLIKIE--PENPGSYVLLSNIYASAGRWNE 590
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/617 (36%), Positives = 341/617 (55%), Gaps = 53/617 (8%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
K +V +N+++ G+ K G ++ LF K+ Q + S +L VV DF
Sbjct: 213 KDSVTFNTLITGYEKD-GLYTESIHLFLKMRQSGHQPSDFTFSGVL---KAVVGLHDFAL 268
Query: 62 ---FQRLPI-----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
L + +D + N ++ + + + + R LF MPE + VS++ +IS Y +
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328
Query: 114 CGQLDKAVELFKVA----------PVKSVVAWTAMISG---------------------- 141
Q + ++ F+ P ++++ A +S
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHV 388
Query: 142 -------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
Y K + AE +F +P + V+W A+I+GYV+ GLKL M G +
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNL 448
Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
R + S+ ++VL + +SL LGKQ+H + +S ++ + + L+ MY KCG ++DA +
Sbjct: 449 RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQ 508
Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
+F E+ ++ V+WNA+IS +A +G GE A+ F KM + G++PDS++ + +L AC+H G
Sbjct: 509 VFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568
Query: 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374
V+ G +YF +M YGI K HY CM+DLLGR G+ EA L+ +MPF+P ++ ++L
Sbjct: 569 VEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVL 628
Query: 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
+ACR+HK LAE AA LF++ A YV ++NIYAA +W+ V ++ +M+E +
Sbjct: 629 NACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIK 688
Query: 435 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 494
K+P YSW+EV +H F S D+ HP I K+ EL ++ GY PD + V E+
Sbjct: 689 KVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQ 748
Query: 495 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 554
+K + L +HSE+LA+AF LI P G PI V KNLR C DCH A K IS I KREI VRDT
Sbjct: 749 MKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDT 808
Query: 555 TRFHHFKDGTCSCGDYW 571
+RFHHF +G CSCGDYW
Sbjct: 809 SRFHHFSEGVCSCGDYW 825
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 142/315 (45%), Gaps = 43/315 (13%)
Query: 49 LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
LL V AA + +P K+T S NTMISG V+ +++ ARDLF AMP++ V+W+ ++
Sbjct: 58 LLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILM 117
Query: 109 SGYIECGQLDKAVELFKVAPVKSV------VAWTAMISG--------------------- 141
Y D+A +LF+ S V +T ++ G
Sbjct: 118 GWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLG 177
Query: 142 ----------------YMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185
Y + ++DLA LF+E+P K+ VT+N +I GY ++ + + L
Sbjct: 178 FDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHL 237
Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245
M G +P+ + S VL L LG+Q+H L + +D + ++ Y K
Sbjct: 238 FLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSK 297
Query: 246 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305
+ + LF E+ D V++N +IS Y+Q + E +L F +M+ G + F +
Sbjct: 298 HDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATM 357
Query: 306 LLACNHAGLVDLGIQ 320
L + + +G Q
Sbjct: 358 LSIAANLSSLQMGRQ 372
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 38/299 (12%)
Query: 69 DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
DT N ++ +++ ++ AR ++ MP KN+VS + MISG+++ G + A +LF P
Sbjct: 47 DTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMP 106
Query: 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188
++VV WT ++ Y + D A KLF +M + T
Sbjct: 107 DRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL---------------------- 144
Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT----TALTPLISMYC 244
P+ + +++L GC+ QVH K L DT T L+ YC
Sbjct: 145 -------PDHVTFTTLLPGCNDAVPQNAVGQVHAFAVK--LGFDTNPFLTVSNVLLKSYC 195
Query: 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
+ L+ AC LF EI KD VT+N +I+GY + G +++ LF KM+ G +P TF
Sbjct: 196 EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255
Query: 305 LLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
+L A GL D + Q ++ G + ++D + +++E L +MP
Sbjct: 256 VLKAV--VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 134/347 (38%), Gaps = 51/347 (14%)
Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
++V + K+ DT ++ + G + A K++ E+ K+ V+ N MISG+ +
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
G A LFD M D + +T+ L+ D + F M PDH
Sbjct: 93 GDVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL-PDH 147
Query: 338 YTCMVDLLGRAGKLVE-AVDLIK----KMPFKPQP--AIFGTLL-SACRVHKRLDLAEFA 389
T L G + + AV + K+ F P + LL S C V +RLDL
Sbjct: 148 VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV-RRLDL---- 202
Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG---YSWIEVGT 446
A LF P + + L Y + + + L M+++ P +S +
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG--HQPSDFTFSGVLKAV 260
Query: 447 V-VHEFRSGDRVHP------------------ELVSIHEKLKELEKRMKLAGYVPDLEFA 487
V +H+F G ++H + S H+++ LE RM L +P+L+F
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV--LETRM-LFDEMPELDFV 317
Query: 488 LHAV------GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
+ V + E L F E + F P T + + NL
Sbjct: 318 SYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/558 (40%), Positives = 321/558 (57%), Gaps = 41/558 (7%)
Query: 54 DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
D +A + R+ K+ S N +I+G+V+ ++ AR +F MP++ +W+AMI+G I+
Sbjct: 94 DFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ 153
Query: 114 CGQLDKAVELFK--------------------VAPVKSV-------------------VA 134
++ + LF+ A ++SV V
Sbjct: 154 FEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVV 213
Query: 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194
+++ YM+ GK+ E + MP +NLV WN +I G +N E L L +MM G
Sbjct: 214 NSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGC 273
Query: 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254
RPN + +VL CS L+ G+Q+H K ++ LISMY KCG L DA K
Sbjct: 274 RPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK 333
Query: 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAG 313
F E + +D V W++MIS Y HG+G++A+ LF+ M ++ M+ + + F+ LL AC+H+G
Sbjct: 334 AFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSG 393
Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
L D G++ FD MV YG HYTC+VDLLGRAG L +A +I+ MP K I+ TL
Sbjct: 394 LKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTL 453
Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
LSAC +HK ++A+ + ++P N + CYV LAN++A+ K+W DV+ +R SM++ NV
Sbjct: 454 LSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASAKRWRDVSEVRKSMRDKNV 512
Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
K G SW E VH+F+ GDR + I+ LKEL MKL GY PD LH + E
Sbjct: 513 KKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDE 572
Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
E KE L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I+ REI +RD
Sbjct: 573 EEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRD 632
Query: 554 TTRFHHFKDGTCSCGDYW 571
+RFHHF +G CSCGDYW
Sbjct: 633 GSRFHHFINGKCSCGDYW 650
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
L I N S + + C+ SL GKQ+H L+ S D L+SMY K GD
Sbjct: 38 LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97
Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
A ++ +++K+ ++ N +I+GY + G A ++FD+M D + T+ A++
Sbjct: 98 AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL----TTWNAMIAGLIQ 153
Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
+ G+ F M +G+ PD YT G AG
Sbjct: 154 FEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 188
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 52/317 (16%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
NS LA + GKL+D + I++ S +P+++
Sbjct: 214 NSSLAHMYMRNGKLQDGE--------------------IVIRS------------MPVRN 241
Query: 70 TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC---GQLDKA-V 121
+WNT+I G Q L+ M N +++ ++S + GQ +
Sbjct: 242 LVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHA 301
Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
E K+ V +++IS Y K G + A K F E ++ V W++MI+ Y + ++
Sbjct: 302 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 361
Query: 182 GLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTAL 236
++L M + N + ++L CSH G ++ ++ + P K T +
Sbjct: 362 AIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCV 421
Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
L+ C D +A + I + D+V W ++S H E A R+F ++ +
Sbjct: 422 VDLLGR-AGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--ID 477
Query: 297 P-DSITFVALLLACNHA 312
P DS +V LLA HA
Sbjct: 478 PNDSACYV--LLANVHA 492
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/539 (41%), Positives = 316/539 (58%), Gaps = 13/539 (2%)
Query: 44 MLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------ 97
++ C L DV A F +P +D SWN++ISG+ + + K ++ M
Sbjct: 72 LVGCYLRLGHDVCAE-KLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGF 130
Query: 98 EKNSVSWSAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEK 153
N V++ +MIS + G ++ + K ++ V A I+ Y K G + + K
Sbjct: 131 RPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCK 190
Query: 154 LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213
LF+++ KNLV+WN MI +++N AE GL M +G P+ ++ +VL C +
Sbjct: 191 LFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGV 250
Query: 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 273
++L + +H L+ + T L+ +Y K G LED+ +F EI D + W AM++
Sbjct: 251 VRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAA 310
Query: 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333
YA HG G A++ F+ M G+ PD +TF LL AC+H+GLV+ G YF++M Y I
Sbjct: 311 YATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDP 370
Query: 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393
+ DHY+CMVDLLGR+G L +A LIK+MP +P ++G LL ACRV+K L AA L
Sbjct: 371 RLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERL 430
Query: 394 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 453
F L P + YV L+NIY+A W D +RIR MK+ +V+ G S+IE G +H+F
Sbjct: 431 FELEPRDGRN-YVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVV 489
Query: 454 GDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 512
GD HPE I +KLKE+ K+MK GY EF LH VGE+VKE+++ HSEK+A+AFG
Sbjct: 490 GDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFG 549
Query: 513 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
L+ V PI + KNLR+CGDCH K IS IEKR II+RD+ RFHHF DG+CSC DYW
Sbjct: 550 LLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 148/350 (42%), Gaps = 71/350 (20%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP------QPDVVSYNIMLS-CILLNSD 53
M + V+WNS+++G++ RG L E+ ++ +P+ V++ M+S C+ S
Sbjct: 92 MPERDLVSWNSLISGYS-GRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSK 150
Query: 54 D-------VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
+ +V F + + + N I+ + + ++ + LF + KN VSW+
Sbjct: 151 EEGRCIHGLVMKFGVLEEVKVV-----NAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNT 205
Query: 107 MISGYIECGQLDKAVELFKVA-----------------------------PVKSVVAW-- 135
MI +++ G +K + F ++ + ++ +
Sbjct: 206 MIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGG 265
Query: 136 --------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
TA++ Y K G+++ + +F E+ + + + W AM+A Y + + D +K
Sbjct: 266 FSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFE 325
Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMY 243
+M+ GI P+ + + +L CSH ++ GK + + K P + + L+
Sbjct: 326 LMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLG-- 383
Query: 244 CKCGDLEDACKLFLEI-QRKDVVTWNAMISG---YAQHGKGEKAL-RLFD 288
+ G L+DA L E+ W A++ Y G KA RLF+
Sbjct: 384 -RSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFE 432
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 29/219 (13%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMI 77
G+L+D+ +F +I PD +++ ML+ + D + F+ I D ++ ++
Sbjct: 284 GRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLL 343
Query: 78 SGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVK-S 131
+ + + + F M ++ + +S M+ G L A L K P++ S
Sbjct: 344 NACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPS 403
Query: 132 VVAWTAMISGYMKFGKVDL----AEKLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKL 185
W A++ + L AE+LF+ P +N V + + Y + +D ++
Sbjct: 404 SGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNI---YSASGLWKDASRI 460
Query: 186 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
+M G+ + GCS+ ++ G ++H+ V
Sbjct: 461 RNLMKQKGLVRAS--------GCSY---IEHGNKIHKFV 488
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/577 (38%), Positives = 343/577 (59%), Gaps = 12/577 (2%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFF 62
K +W +++ G+ K G +EL + + +V+YN M+S +N A +
Sbjct: 217 KDERSWTTMMTGYVKN-GYFDLGEELLEGMDDNMKLVAYNAMISG-YVNRGFYQEALEMV 274
Query: 63 QRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW---SAMISGYIECG 115
+R+ D ++ ++I + + + + + S+ ++++S Y +CG
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCG 334
Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
+ D+A +F+ P K +V+W A++SGY+ G + A+ +F EM KN+++W MI+G E
Sbjct: 335 KFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE 394
Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235
N + E+GLKL M G P + S + C+ L + G+Q H + K +A
Sbjct: 395 NGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSA 454
Query: 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295
LI+MY KCG +E+A ++F + D V+WNA+I+ QHG G +A+ ++++M +G+
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514
Query: 296 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355
+PD IT + +L AC+HAGLVD G +YFDSM Y I DHY ++DLL R+GK +A
Sbjct: 515 RPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAE 574
Query: 356 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
+I+ +PFKP I+ LLS CRVH ++L AA LF L P + G Y+ L+N++AA
Sbjct: 575 SVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEH-DGTYMLLSNMHAAT 633
Query: 416 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 475
+W++VAR+R M++ V K SWIE+ T VH F D HPE +++ L++L K M
Sbjct: 634 GQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693
Query: 476 KLAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 534
+ GYVPD F LH V + KE +L HSEK+A+AFGL+K+P GT IR+FKNLR CGDC
Sbjct: 694 RRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDC 753
Query: 535 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
H +++S + +R+II+RD RFHHF++G CSCG++W
Sbjct: 754 HNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 188/421 (44%), Gaps = 85/421 (20%)
Query: 22 KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISG 79
+L A++LFD+I +PD ++ M+S S D+ A F++ P+ +DT +N MI+G
Sbjct: 64 ELNYARQLFDEISEPDKIARTTMVSG-YCASGDITLARGVFEKAPVCMRDTVMYNAMITG 122
Query: 80 FVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
F + A +LF M + ++ +++++++G +K F A +KS +
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY 182
Query: 136 -----TAMISGYMKFGK----VDLAEKLFDEMPTKNLVTWNAMIAGYVENSW-------- 178
A++S Y K + A K+FDE+ K+ +W M+ GYV+N +
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 242
Query: 179 ------------------------AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214
++ L+++R M+ GI + + SV+ C+ L
Sbjct: 243 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 302
Query: 215 QLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 272
QLGKQVH V + +D + L+S+Y KCG ++A +F ++ KD+V+WNA++S
Sbjct: 303 QLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359
Query: 273 GY-------------------------------AQHGKGEKALRLFDKMKDEGMKPDSIT 301
GY A++G GE+ L+LF MK EG +P
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419
Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
F + +C G G QY ++ G + ++ + + G + EA + + M
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Query: 362 P 362
P
Sbjct: 479 P 479
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 135/328 (41%), Gaps = 68/328 (20%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
N +I + + + AR LF + E + ++ + M+SGY G + A +F+ APV
Sbjct: 53 NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPV---- 108
Query: 134 AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
++ V +NAMI G+ N+ + L M G
Sbjct: 109 -------------------------CMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 194 IRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGD---- 248
+P+ + +SVL G + ++ + Q H KS T+ L+S+Y KC
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSL 203
Query: 249 LEDACKLFLEIQRKDVVTW--------------------------------NAMISGYAQ 276
L A K+F EI KD +W NAMISGY
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
G ++AL + +M G++ D T+ +++ AC AGL+ LG Q ++ + D
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323
Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
+ +V L + GK EA + +KMP K
Sbjct: 324 N--SLVSLYYKCGKFDEARAIFEKMPAK 349
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 128/302 (42%), Gaps = 47/302 (15%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K V+WN++L+G+ G + +A+ +F ++ + +++
Sbjct: 346 MPAKDLVSWNALLSGYVSS-GHIGEAKLIFKEMKEKNIL--------------------- 383
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE------- 113
SW MISG + + LF M + SG I+
Sbjct: 384 -----------SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432
Query: 114 -CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
C +L K+ S+ A A+I+ Y K G V+ A ++F MP + V+WNA+IA
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492
Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH---QLVFKSPL 229
++ + + + M+ GIRP+ +L +VL CSH + G++ + V++ P
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPP 552
Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV-TWNAMISGYAQHGKGEKALRLFD 288
D A LI + C+ G DA + + K W A++SG HG E + D
Sbjct: 553 GADHYA--RLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAAD 610
Query: 289 KM 290
K+
Sbjct: 611 KL 612
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
+I G +P A L+ ++ S L +Q+ + + D A T ++S YC GD
Sbjct: 40 IITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP----DKIARTTMVSGYCASGD 95
Query: 249 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
+ A +F + + +D V +NAMI+G++ + G A+ LF KMK EG KPD+ TF ++L
Sbjct: 96 ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/523 (40%), Positives = 309/523 (59%), Gaps = 9/523 (1%)
Query: 57 AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CG 115
A+D R KD SW TMI+G+ Q KA F M ++ S ++ + C
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602
Query: 116 QLDKAVELFKVAPVKSVVAWT-------AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNA 168
L E ++ V ++ A+++ Y + GK++ + F++ + + WNA
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662
Query: 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228
+++G+ ++ E+ L++ M GI N + S + S ++++ GKQVH ++ K+
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 722
Query: 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
+T LISMY KCG + DA K FLE+ K+ V+WNA+I+ Y++HG G +AL FD
Sbjct: 723 YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFD 782
Query: 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
+M ++P+ +T V +L AC+H GLVD GI YF+SM ++YG++ KP+HY C+VD+L RA
Sbjct: 783 QMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRA 842
Query: 349 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408
G L A + I++MP KP ++ TLLSAC VHK +++ EFAA +L L P ++A YV L
Sbjct: 843 GLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA-TYVLL 901
Query: 409 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 468
+N+YA KKWD R MKE V K PG SWIEV +H F GD+ HP IHE
Sbjct: 902 SNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYF 961
Query: 469 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
++L KR GYV D L+ + E K+ ++ HSEKLAI+FGL+ +P PI V KNL
Sbjct: 962 QDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNL 1021
Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
RVC DCH K++S + REIIVRD RFHHF+ G CSC DYW
Sbjct: 1022 RVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 177/363 (48%), Gaps = 15/363 (4%)
Query: 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFF 62
T+ W +L G K G L + ++L +I + + S + L L D+ AF F
Sbjct: 86 TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVF 143
Query: 63 QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAV 121
+P + +WN MI + + + LF+ M +N SG +E C A
Sbjct: 144 DEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAF 203
Query: 122 ELFKVAPVK--------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
++ + + S V +I Y + G VDLA ++FD + K+ +W AMI+G
Sbjct: 204 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 263
Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
+N + ++L M LGI P + SSVL C + SL++G+Q+H LV K DT
Sbjct: 264 SKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 323
Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
L+S+Y G+L A +F + ++D VT+N +I+G +Q G GEKA+ LF +M +
Sbjct: 324 YVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLD 383
Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
G++PDS T +L++AC+ G + G Q + G A+ +++L + +
Sbjct: 384 GLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442
Query: 354 AVD 356
A+D
Sbjct: 443 ALD 445
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 151/309 (48%), Gaps = 9/309 (2%)
Query: 54 DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
D+ A D+F +++ WN M+ + ++ + +F M + N ++ +++
Sbjct: 439 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498
Query: 110 GYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
I G L+ ++ K + + +I Y K GK+D A + K++V+
Sbjct: 499 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 558
Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
W MIAGY + ++ + L R M+ GIR + L++ + C+ L +L+ G+Q+H
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 618
Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
S D L+++Y +CG +E++ F + + D + WNA++SG+ Q G E+ALR
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678
Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
+F +M EG+ ++ TF + + A + + G Q +++ G ++ + ++ +
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMY 737
Query: 346 GRAGKLVEA 354
+ G + +A
Sbjct: 738 AKCGSISDA 746
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)
Query: 62 FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
F L +KD +SW MISG + + A+A LF M ++S+++S + L
Sbjct: 245 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 304
Query: 118 DKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
+ +L K+ A++S Y G + AE +F M ++ VT+N +I G
Sbjct: 305 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 364
Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
+ + E ++L + M G+ P++++L+S+++ CS +L G+Q+H K +
Sbjct: 365 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN 424
Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
L+++Y KC D+E A FLE + ++VV WN M+ Y + R+F +M+ E
Sbjct: 425 KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE 484
Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTC--MVDLLGRAGK 350
+ P+ T+ ++L C G ++LG Q ++ ++ + A Y C ++D+ + GK
Sbjct: 485 EIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGK 540
Query: 351 LVEAVDLIKKMPFK 364
L A D++ + K
Sbjct: 541 LDTAWDILIRFAGK 554
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 42/326 (12%)
Query: 69 DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
DT N ++S + N+ A +F M ++++V+++ +I+G +CG +KA+ELFK
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 126 ---VAPVKSVVA--------------------WT-------------AMISGYMKFGKVD 149
+ P + +A +T A+++ Y K ++
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441
Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
A F E +N+V WN M+ Y + ++ R M I PN + S+L C
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501
Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
L L+LG+Q+H + K+ + + LI MY K G L+ A + + KDVV+W
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVND 328
MI+GY Q+ +KAL F +M D G++ D + + AC AGL L Q +
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACV 619
Query: 329 YGIAAKPDHYTCMVDLLGRAGKLVEA 354
G ++ +V L R GK+ E+
Sbjct: 620 SGFSSDLPFQNALVTLYSRCGKIEES 645
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 141/368 (38%), Gaps = 75/368 (20%)
Query: 193 GIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
GIRPN +L +L GC + SL G+++H + K L + L Y GDL
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 310
A K+F E+ + + TWN MI A + LF +M E + P+ TF +L AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 311 -----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKP 335
HA G VDL + FD G+ K
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD------GLRLK- 251
Query: 336 DH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 390
DH + M+ L + EA+ L M P P F ++LSAC+ + L++ E
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE--Q 309
Query: 391 MNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 448
++ L ++ YV L ++Y + I +M + + V T++
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY--------NTLI 361
Query: 449 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD------LEFALHAVGEEVKEQLLLF 502
+ EK EL KRM L G PD L A A G + Q L
Sbjct: 362 NGLSQ--------CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 503 HSEKLAIA 510
++ KL A
Sbjct: 414 YTTKLGFA 421
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 150/389 (38%), Gaps = 90/389 (23%)
Query: 3 VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------- 49
+KT N SVL + GKL A ++ + DVVS+ M++
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576
Query: 50 ----------LNSDDV-----VAAFDFFQRLPIKDTASWNTMISGFVQK----------- 83
+ SD+V V+A Q L +SGF
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 636
Query: 84 KNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELF---------------- 124
K + +LA + ++++W+A++SG+ + G ++A+ +F
Sbjct: 637 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 696
Query: 125 ---KVAP----------VKSVVAWT----------AMISGYMKFGKVDLAEKLFDEMPTK 161
K A V +V+ T A+IS Y K G + AEK F E+ TK
Sbjct: 697 SAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 756
Query: 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQV 220
N V+WNA+I Y ++ + + L MI +RPN +L VL CSH+ + G
Sbjct: 757 NEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816
Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGK 279
+ + L ++ M + G L A + E+ K D + W ++S H
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKN 876
Query: 280 ---GEKALRLFDKMKDEGMKPDSITFVAL 305
GE A +++ E DS T+V L
Sbjct: 877 MEIGEFAAHHLLELEPE----DSATYVLL 901
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/576 (38%), Positives = 324/576 (56%), Gaps = 43/576 (7%)
Query: 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
DV N ++ C + D+ +A F + KD SWN+MI+GFVQK + KA +LF M
Sbjct: 165 DVFVANSLIHC-YFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223
Query: 97 P----------------------------------EKNSVS-----WSAMISGYIECGQL 117
E+N V+ +AM+ Y +CG +
Sbjct: 224 ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSI 283
Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177
+ A LF K V WT M+ GY + A ++ + MP K++V WNA+I+ Y +N
Sbjct: 284 EDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNG 343
Query: 178 WAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236
+ L + + + ++ N +L S L C+ + +L+LG+ +H + K + +
Sbjct: 344 KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVT 403
Query: 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296
+ LI MY KCGDLE + ++F ++++DV W+AMI G A HG G +A+ +F KM++ +K
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356
P+ +TF + AC+H GLVD F M ++YGI + HY C+VD+LGR+G L +AV
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVK 523
Query: 357 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416
I+ MP P +++G LL AC++H L+LAE A L L P N G +V L+NIYA +
Sbjct: 524 FIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN-DGAHVLLSNIYAKLG 582
Query: 417 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476
KW++V+ +R M+ + K PG S IE+ ++HEF SGD HP ++ KL E+ +++K
Sbjct: 583 KWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 642
Query: 477 LAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 535
GY P++ L + EE+KEQ L HSEKLAI +GLI IRV KNLRVCGDCH
Sbjct: 643 SNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCH 702
Query: 536 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
K IS + REIIVRD RFHHF++G CSC D+W
Sbjct: 703 SVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 45/384 (11%)
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGY------VENSWAEDGLKLLRMMIGLGIRPNA 198
F ++ A K+FDE+P N WN +I Y V + WA L M+ PN
Sbjct: 77 FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWA-----FLDMVSESQCYPNK 131
Query: 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258
+ ++ + +SSL LG+ +H + KS + D LI Y CGDL+ ACK+F
Sbjct: 132 YTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 191
Query: 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
I+ KDVV+WN+MI+G+ Q G +KAL LF KM+ E +K +T V +L AC ++ G
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251
Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
Q S + + + M+D+ + G + +A L M K + T+L
Sbjct: 252 RQVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYA 309
Query: 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV------ARIRLSMKENN 432
+ + + AA + N P + L + Y K ++ +++ +MK N
Sbjct: 310 ISEDYE----AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 365
Query: 433 VVKMPGYS------------WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480
+ + S WI H R V L+ ++ K +LEK ++
Sbjct: 366 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 425
Query: 481 VPDLE----------FALHAVGEE 494
V + A+H G E
Sbjct: 426 VEKRDVFVWSAMIGGLAMHGCGNE 449
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 188/443 (42%), Gaps = 94/443 (21%)
Query: 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
+ L+ FA L+ A+++FD+IP+P+ ++N ++ D V++ + F
Sbjct: 72 AALSSFAS----LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLD------- 120
Query: 71 ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
M+S N L A E +S+S + G K A
Sbjct: 121 -----MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA-----------VKSAVGS 164
Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
V ++I Y G +D A K+F + K++V+WN+MI G+V+ + L+L + M
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
++ + ++ VL C+ + +L+ G+QV + ++ + + T ++ MY KCG +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 251 DACKLFLEIQ-------------------------------RKDVVTWNAMISGYAQHGK 279
DA +LF ++ +KD+V WNA+IS Y Q+GK
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 280 GEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
+AL +F +++ + MK + IT V+ L AC G ++LG ++ S + +GI
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVT 403
Query: 339 TCMVDLLGRAGKLV-------------------------------EAVDLIKKMP---FK 364
+ ++ + + G L EAVD+ KM K
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 365 PQPAIFGTLLSACRVHKRLDLAE 387
P F + AC +D AE
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAE 486
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/565 (39%), Positives = 340/565 (60%), Gaps = 14/565 (2%)
Query: 19 QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWN 74
+ G + +A+ KI + D+ ++ L +L+N+ V A F + + SWN
Sbjct: 73 RNGAVMEAKACHGKIIRIDLEG-DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 131
Query: 75 TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELFKVA--PVKS 131
TMI + + + ++A D+FL M + IS + CG A+E K+ VK+
Sbjct: 132 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 191
Query: 132 VV-----AWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
+ TA++ Y K G + A ++F+ M K+ VTW++M+AGYV+N E+ L L
Sbjct: 192 CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLY 251
Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
R + + N +LSSV+ CS+L++L GKQ+H ++ KS + + + MY KC
Sbjct: 252 RRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKC 311
Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
G L ++ +F E+Q K++ WN +ISG+A+H + ++ + LF+KM+ +GM P+ +TF +LL
Sbjct: 312 GSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLL 371
Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
C H GLV+ G ++F M YG++ HY+CMVD+LGRAG L EA +LIK +PF P
Sbjct: 372 SVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPT 431
Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
+I+G+LL++CRV+K L+LAE AA LF L P N AG +V L+NIYAA K+W+++A+ R
Sbjct: 432 ASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN-AGNHVLLSNIYAANKQWEEIAKSRK 490
Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 486
+++ +V K+ G SWI++ VH F G+ HP + I L L + + GY P +E
Sbjct: 491 LLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEH 550
Query: 487 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 546
LH V KE+LL+ HSEKLA+ FGL+ +P +P+R+ KNLR+C DCH K S +
Sbjct: 551 ELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATR 610
Query: 547 REIIVRDTTRFHHFKDGTCSCGDYW 571
R IIVRD RFHHF DG CSCGD+W
Sbjct: 611 RFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%)
Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
N + + +L C+ ++ K H + + L D T L LI+ Y KCG +E A ++F
Sbjct: 60 NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119
Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
+ + +V+WN MI Y ++ +AL +F +M++EG K T ++L AC
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 117/271 (43%), Gaps = 47/271 (17%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K++V W+S++AG+ Q ++A L+ + + + LS ++ ++ A +
Sbjct: 223 MQDKSSVTWSSMVAGYV-QNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 281
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
Q + SGF ++F+A S+ + Y +CG L ++
Sbjct: 282 GKQMHAV-------ICKSGF--------GSNVFVA---------SSAVDMYAKCGSLRES 317
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVEN 176
+F K++ W +ISG+ K + LF++M N VT++++++
Sbjct: 318 YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 377
Query: 177 SWAEDGLKLLRMM-IGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
E+G + ++M G+ PN S + +LG + L S + ++L+ P
Sbjct: 378 GLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS-----EAYELIKSIP----- 427
Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
P S++ G L +C+++ ++ +V
Sbjct: 428 --FDPTASIW---GSLLASCRVYKNLELAEV 453
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 238/667 (35%), Positives = 354/667 (53%), Gaps = 100/667 (14%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSY-NIM---------- 44
M+V V+WNS++ +AK GK K A E+F ++ +PD ++ N++
Sbjct: 188 MSVWDVVSWNSIIESYAKL-GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHS 246
Query: 45 ----LSCILLNSDDVVAAF-------------------DFFQRLPIKDTASWNTMISGFV 81
L C + S+ + F F + +KD SWN M++G+
Sbjct: 247 LGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306
Query: 82 QKKNMAKARDLFLAMPEK----NSVSWSAMISGY-------------------------- 111
Q A LF M E+ + V+WSA ISGY
Sbjct: 307 QIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366
Query: 112 --------------------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLA 151
I C + ++L K + +I Y K KVD A
Sbjct: 367 TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTA 426
Query: 152 EKLFDEMPTK--NLVTWNAMIAGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLG 207
+FD + K ++VTW MI GY ++ A L+LL M RPNA ++S L+
Sbjct: 427 RAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVA 486
Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDV 264
C+ L++L++GKQ+H ++ ++ L LI MY KCG + DA +F + K+
Sbjct: 487 CASLAALRIGKQIHAYALRNQ--QNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544
Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
VTW ++++GY HG GE+AL +FD+M+ G K D +T + +L AC+H+G++D G++YF+
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604
Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
M +G++ P+HY C+VDLLGRAG+L A+ LI++MP +P P ++ LS CR+H +++
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664
Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444
L E+AA + L +N G Y L+N+YA +W DV RIR M+ V K PG SW+E
Sbjct: 665 LGEYAAEKITEL-ASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723
Query: 445 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 504
F GD+ HP I++ L + +R+K GYVP+ FALH V +E K+ LL HS
Sbjct: 724 IKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHS 783
Query: 505 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564
EKLA+A+G++ P G IR+ KNLRVCGDCH A Y+S I +II+RD++RFHHFK+G+
Sbjct: 784 EKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGS 843
Query: 565 CSCGDYW 571
CSC YW
Sbjct: 844 CSCKGYW 850
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 190/370 (51%), Gaps = 28/370 (7%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIK 68
N+++A +++ R L DA+++FD++ DVVS+N I+ S L V A + F R+ +
Sbjct: 166 NALVAMYSRCR-SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV--ALEMFSRMTNE 222
Query: 69 -----DTASWNTMI--SGFVQKKNMAKARDLFLAMPE--KNSVSWSAMISGYIECGQLDK 119
D + ++ + ++ K F E +N + ++ Y +CG +D+
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE 282
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK----NLVTWNAMIAGYVE 175
A +F VK VV+W AM++GY + G+ + A +LF++M + ++VTW+A I+GY +
Sbjct: 283 ANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342
Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL------ 229
+ L + R M+ GI+PN +L SVL GC+ + +L GK++H K P+
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNG 402
Query: 230 -CKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
+ + LI MY KC ++ A +F L + +DVVTW MI GY+QHG KAL L
Sbjct: 403 HGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALEL 462
Query: 287 FDKMKDEG--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
+M +E +P++ T L+AC + +G Q + + A C++D+
Sbjct: 463 LSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDM 522
Query: 345 LGRAGKLVEA 354
+ G + +A
Sbjct: 523 YAKCGSISDA 532
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 21/273 (7%)
Query: 58 AFDFFQRLPIKDTA--SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS---------- 105
A +R P D WN++I + K LF M +S+SW+
Sbjct: 78 AVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLM---HSLSWTPDNYTFPFVF 134
Query: 106 ---AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
IS + CG+ A+ L + +V A+++ Y + + A K+FDEM +
Sbjct: 135 KACGEISS-VRCGESAHALSLV-TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWD 192
Query: 163 LVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
+V+WN++I Y + + L++ RM G RP+ +L +VL C+ L + LGKQ+H
Sbjct: 193 VVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLH 252
Query: 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 281
S + ++ L+ MY KCG +++A +F + KDVV+WNAM++GY+Q G+ E
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312
Query: 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314
A+RLF+KM++E +K D +T+ A + GL
Sbjct: 313 DAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 14/235 (5%)
Query: 138 MISGYMKFGKVDLAEKLFDEMPTKN--LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
+IS Y+ G + A L P + + WN++I Y +N A L L +M L
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
P+ + V C +SS++ G+ H L + + L++MY +C L DA K+
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 314
F E+ DVV+WN++I YA+ GK + AL +F +M +E G +PD+IT V +L C G
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244
Query: 315 VDLGIQYF-----DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
LG Q M+ + + C+VD+ + G + EA + M K
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVG------NCLVDMYAKCGMMDEANTVFSNMSVK 293
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/469 (43%), Positives = 299/469 (63%), Gaps = 3/469 (0%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
+ ++ Y + G + A ++F P +S+V+ TAMI+ Y K G V+ A LFD M +++V
Sbjct: 165 TGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIV 224
Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223
+WN MI GY ++ + D L L + ++ G +P+ ++ + L CS + +L+ G+ +H
Sbjct: 225 SWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVF 284
Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283
V S + + T LI MY KCG LE+A +F + RKD+V WNAMI+GYA HG + A
Sbjct: 285 VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDA 344
Query: 284 LRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342
LRLF++M+ G++P ITF+ L AC HAGLV+ GI+ F+SM +YGI K +HY C+V
Sbjct: 345 LRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLV 404
Query: 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402
LLGRAG+L A + IK M ++ ++L +C++H L + A L LN N+
Sbjct: 405 SLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNS- 463
Query: 403 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 462
G YV L+NIYA++ ++ VA++R MKE +VK PG S IE+ VHEFR+GDR H +
Sbjct: 464 GIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSK 523
Query: 463 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
I+ L+++ +R+K GYVP+ L + E KEQ L HSE+LAIA+GLI G+P+
Sbjct: 524 EIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPL 583
Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
++FKNLRVC DCH TK IS I R+I++RD RFHHF DG+CSCGD+W
Sbjct: 584 KIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 134/270 (49%), Gaps = 13/270 (4%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G + AQ++FD++P+ +VS M++C +V AA F + +D SWN MI G+
Sbjct: 175 GDVVSAQKVFDRMPERSLVSSTAMITC-YAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 81 VQKKNMAKARDLFLAM-----PEKNSVSWSAMISGYIECGQLDKA--VELF-KVAPVK-S 131
Q A LF + P+ + ++ A +S + G L+ + +F K + ++ +
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293
Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
V T +I Y K G ++ A +F++ P K++V WNAMIAGY + +++D L+L M G
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQG 353
Query: 192 L-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYCKCGDL 249
+ G++P + L C+H + G ++ + + + K L+S+ + G L
Sbjct: 354 ITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQL 413
Query: 250 EDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
+ A + + D V W++++ HG
Sbjct: 414 KRAYETIKNMNMDADSVLWSSVLGSCKLHG 443
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 109/256 (42%), Gaps = 37/256 (14%)
Query: 141 GYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200
Y GK+ + LF + +L + A I N + L ++ I PN +
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF---- 256
SS+L CS S GK +H V K L D T L+ +Y K GD+ A K+F
Sbjct: 133 FSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 257 -------------------LEIQR--------KDVVTWNAMISGYAQHGKGEKALRLFDK 289
+E R +D+V+WN MI GYAQHG AL LF K
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 290 MKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348
+ EG KPD IT VA L AC+ G ++ G ++ V I T ++D+ +
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKC 307
Query: 349 GKLVEAVDLIKKMPFK 364
G L EAV + P K
Sbjct: 308 GSLEEAVLVFNDTPRK 323
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/624 (38%), Positives = 341/624 (54%), Gaps = 63/624 (10%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + V+WN+++AG++ Q G + A E+ + + N+ S I + S V+ A
Sbjct: 196 MPERDLVSWNTIVAGYS-QNGMARMALEMVKSMCEE-----NLKPSFITIVS--VLPAVS 247
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKA--------------RDLFLAMPEKNSVSWSA 106
+ + + M SGF N++ A R LF M E+N VSW++
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 307
Query: 107 MISGYIECGQLDKAVELFK------VAPV------------------------------- 129
MI Y++ +A+ +F+ V P
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG 367
Query: 130 --KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
++V ++IS Y K +VD A +F ++ ++ LV+WNAMI G+ +N D L
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427
Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
M ++P+ + SV+ + LS K +H +V +S L K+ T L+ MY KCG
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
+ A +F + + V TWNAMI GY HG G+ AL LF++M+ +KP+ +TF++++
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
AC+H+GLV+ G++ F M +Y I DHY MVDLLGRAG+L EA D I +MP KP
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607
Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
++G +L AC++HK ++ AE AA LF LNP + G +V LANIY A W+ V ++R+S
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNP-DDGGYHVLLANIYRAASMWEKVGQVRVS 666
Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
M + K PG S +E+ VH F SG HP+ I+ L++L +K AGYVPD
Sbjct: 667 MLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLV 726
Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 547
L V +VKEQLL HSEKLAI+FGL+ GT I V KNLRVC DCH ATKYIS + R
Sbjct: 727 L-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGR 785
Query: 548 EIIVRDTTRFHHFKDGTCSCGDYW 571
EI+VRD RFHHFK+G CSCGDYW
Sbjct: 786 EIVVRDMQRFHHFKNGACSCGDYW 809
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 178/363 (49%), Gaps = 53/363 (14%)
Query: 62 FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
F R+P +D SWNT+++G+ Q A ++ +M E+N + +I + AV
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN------LKPSFITIVSVLPAV 246
Query: 122 ELFKVAPVKSVVAWTAMISG--------------YMKFGKVDLAEKLFDEMPTKNLVTWN 167
++ V + AM SG Y K G ++ A +LFD M +N+V+WN
Sbjct: 247 SALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWN 306
Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
+MI YV+N ++ + + + M+ G++P S+ L C+ L L+ G+ +H+L +
Sbjct: 307 SMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVEL 366
Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
L ++ + + LISMYCKC +++ A +F ++Q + +V+WNAMI G+AQ+G+ AL F
Sbjct: 367 GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYF 426
Query: 288 DKMKDEGMKPDSITFVALLLA------CNHA--------------------GLVDL---- 317
+M+ +KPD+ T+V+++ A +HA LVD+
Sbjct: 427 SQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKC 486
Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLL 374
G ++ D + M+D G G A++L ++M KP F +++
Sbjct: 487 GAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVI 546
Query: 375 SAC 377
SAC
Sbjct: 547 SAC 549
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 141/265 (53%), Gaps = 8/265 (3%)
Query: 62 FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIECG 115
F+ + K ++TM+ GF + ++ KA F+ M P + ++ + G
Sbjct: 92 FEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAEL 151
Query: 116 QLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGY 173
++ K + L K + A T + + Y K +V+ A K+FD MP ++LV+WN ++AGY
Sbjct: 152 RVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGY 211
Query: 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 233
+N A L++++ M ++P+ ++ SVL S L + +GK++H +S
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271
Query: 234 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
T L+ MY KCG LE A +LF + ++VV+WN+MI Y Q+ ++A+ +F KM DE
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331
Query: 294 GMKPDSITFVALLLACNHAGLVDLG 318
G+KP ++ + L AC G ++ G
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERG 356
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 17/234 (7%)
Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
T ++S + ++G VD A ++F+ + +K V ++ M+ G+ + S + L+ M +
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
P + + +L C + L++GK++H L+ KS D A+T L +MY KC + +A K+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
F + +D+V+WN +++GY+Q+G AL + M +E +KP IT V++L A + L+
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 316 DLGIQY--------FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
+G + FDS+VN T +VD+ + G L A L M
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNI---------STALVDMYAKCGSLETARQLFDGM 297
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
SSL+ +Q+ LVFK+ L ++ T L+S++C+ G +++A ++F I K V ++ M+
Sbjct: 48 SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107
Query: 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331
G+A+ +KAL+ F +M+ + ++P F LL C + +G + +V G
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GF 166
Query: 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
+ T + ++ + ++ EA + +MP
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 236/627 (37%), Positives = 362/627 (57%), Gaps = 62/627 (9%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K +V+WNS++ G Q G +A E + + + D++ S L++S A+
Sbjct: 375 MTDKDSVSWNSMITGL-DQNGCFIEAVERYKSMRRHDILPG----SFTLISSLSSCASLK 429
Query: 61 FFQ----------RLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
+ + +L I + + N +++ + + + + R +F +MPE + VSW+++I
Sbjct: 430 WAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIG 489
Query: 110 GY----------IEC----------------------------GQLDKAVE--LFKVAPV 129
+ C G+L K + K
Sbjct: 490 ALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIA 549
Query: 130 KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAGYVENSWAEDGLKLLRM 188
A+I+ Y K G++D EK+F M + + VTWN+MI+GY+ N L L+
Sbjct: 550 DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWF 609
Query: 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248
M+ G R ++ ++VL + +++L+ G +VH ++ L D + L+ MY KCG
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 669
Query: 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLL 307
L+ A + F + ++ +WN+MISGYA+HG+GE+AL+LF+ MK +G P D +TFV +L
Sbjct: 670 LDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLS 729
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
AC+HAGL++ G ++F+SM + YG+A + +H++CM D+LGRAG+L + D I+KMP KP
Sbjct: 730 ACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNV 789
Query: 368 AIFGTLLSAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425
I+ T+L AC R + R +L + AA LF L P NA YV L N+YAA +W+D+ + R
Sbjct: 790 LIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN-YVLLGNMYAAGGRWEDLVKAR 848
Query: 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
MK+ +V K GYSW+ + VH F +GD+ HP+ I++KLKEL ++M+ AGYVP
Sbjct: 849 KKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTG 908
Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYISAI 544
FAL+ + +E KE++L +HSEKLA+AF L T PIR+ KNLRVCGDCH A KYIS I
Sbjct: 909 FALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKI 968
Query: 545 EKREIIVRDTTRFHHFKDGTCSCGDYW 571
E R+II+RD+ RFHHF+DG CSC D+W
Sbjct: 969 EGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 4/192 (2%)
Query: 123 LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
L+K K V +I+ Y++ G A K+FDEMP +N V+W +++GY N ++
Sbjct: 27 LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEA 86
Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL--GKQVHQLVFKSPLCKDTTALTPLI 240
L LR M+ GI N + SVL C + S+ + G+Q+H L+FK D LI
Sbjct: 87 LVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLI 146
Query: 241 SMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299
SMY KC G + A F +I+ K+ V+WN++IS Y+Q G A R+F M+ +G +P
Sbjct: 147 SMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTE 206
Query: 300 ITFVALL-LACN 310
TF +L+ AC+
Sbjct: 207 YTFGSLVTTACS 218
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 23/362 (6%)
Query: 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
D V N+++S V A F + +K++ SWN++IS + Q + A +F +M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197
Query: 97 PEKNS----VSWSAMISGYIECGQLDKAVELF--------KVAPVKSVVAWTAMISGYMK 144
S ++ ++++ C + V L K + + + ++S + K
Sbjct: 198 QYDGSRPTEYTFGSLVT--TACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAK 255
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL---LRMMIGLGIRPNASSL 201
G + A K+F++M T+N VT N ++ G V W E+ KL + MI + L
Sbjct: 256 SGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILL 315
Query: 202 SSV-LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEI 259
SS + L+ G++VH V + L + L++MY KCG + DA ++F +
Sbjct: 316 SSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFM 375
Query: 260 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319
KD V+WN+MI+G Q+G +A+ + M+ + P S T ++ L +C LG
Sbjct: 376 TDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ 435
Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSA 376
Q + GI ++ L G L E + MP Q +I G L +
Sbjct: 436 QIHGESLK-LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARS 494
Query: 377 CR 378
R
Sbjct: 495 ER 496
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 190/438 (43%), Gaps = 59/438 (13%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK----------------------IPQPDV 38
+ VK +V+WNS+++ ++ Q G + A +F + +PDV
Sbjct: 166 IEVKNSVSWNSIISVYS-QAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDV 224
Query: 39 VSYNIMLSCI--------LLNSDDVVAAF----------DFFQRLPIKDTASWNTMISGF 80
++ I L +V+AF F ++ ++ + N ++ G
Sbjct: 225 RLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGL 284
Query: 81 VQKKNMAKARDLFL---AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
V++K +A LF+ +M + + S+ ++S + E L + V L K V V T
Sbjct: 285 VRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEY-SLAEEVGLKKGREVHGHVITTG 343
Query: 138 MI-----------SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
++ + Y K G + A ++F M K+ V+WN+MI G +N + ++
Sbjct: 344 LVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERY 403
Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
+ M I P + +L S L C+ L +LG+Q+H K + + + L+++Y +
Sbjct: 404 KSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAET 463
Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG-EKALRLFDKMKDEGMKPDSITFVAL 305
G L + K+F + D V+WN++I A+ + +A+ F + G K + ITF ++
Sbjct: 464 GYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSV 523
Query: 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365
L A + +LG Q + + IA + ++ G+ G++ + +M +
Sbjct: 524 LSAVSSLSFGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAERR 582
Query: 366 QPAIFGTLLSACRVHKRL 383
+ +++S +H L
Sbjct: 583 DNVTWNSMISG-YIHNEL 599
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 112/485 (23%), Positives = 192/485 (39%), Gaps = 106/485 (21%)
Query: 68 KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----- 122
KD N +I+ +++ + AR +F MP +N VSW+ ++SGY G+ +A+
Sbjct: 34 KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93
Query: 123 ------------------------------------LFKVAPVKSVVAWTAMISGYMK-F 145
+FK++ V +IS Y K
Sbjct: 94 VKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCI 153
Query: 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205
G V A F ++ KN V+WN++I+ Y + ++ M G RP + S++
Sbjct: 154 GSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLV 213
Query: 206 LGCSHLSS--LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263
L+ ++L +Q+ + KS L D + L+S + K G L A K+F +++ ++
Sbjct: 214 TTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRN 273
Query: 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH----------- 311
VT N ++ G + GE+A +LF M + P+S +V LL +
Sbjct: 274 AVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPES--YVILLSSFPEYSLAEEVGLKK 331
Query: 312 ----------AGLVDLGIQYFDSMVNDY---GIAAKPDH------------YTCMVDLLG 346
GLVD + + +VN Y G A + M+ L
Sbjct: 332 GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLD 391
Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE---FAAMNL---FNLN 397
+ G +EAV+ K M P + LS+C K L + ++ L N++
Sbjct: 392 QNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVS 451
Query: 398 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 457
+NA L +YA ++ +I SM E++ V SW +++ +R
Sbjct: 452 VSNA------LMTLYAETGYLNECRKIFSSMPEHDQV-----SW---NSIIGALARSERS 497
Query: 458 HPELV 462
PE V
Sbjct: 498 LPEAV 502
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 280
H ++K+ L KD LI+ Y + GD A K+F E+ ++ V+W ++SGY+++G+
Sbjct: 24 HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83
Query: 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
++AL M EG+ + FV++L AC G V +
Sbjct: 84 KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGI 120
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/523 (41%), Positives = 305/523 (58%), Gaps = 10/523 (1%)
Query: 58 AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
A F+ + D +N+M G+ + N + LF+ + E + + ++ +
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 118 DKAVE--------LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
KA+E K+ +V +I+ Y + VD A +FD + +V +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
I GY + + L L R M G ++PN +L SVL C+ L SL LGK +H+ K
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261
Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
CK T LI M+ KCG L+DA +F +++ KD W+AMI YA HGK EK++ +F++
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321
Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
M+ E ++PD ITF+ LL AC+H G V+ G +YF MV+ +GI HY MVDLL RAG
Sbjct: 322 MRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAG 381
Query: 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409
L +A + I K+P P P ++ LL+AC H LDLAE + +F L+ ++ G YV L+
Sbjct: 382 NLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH-GGDYVILS 440
Query: 410 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 469
N+YA KKW+ V +R MK+ VK+PG S IEV VVHEF SGD V +H L
Sbjct: 441 NLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALD 500
Query: 470 ELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 528
E+ K +KL+GYVPD +HA + ++ KE L +HSEKLAI FGL+ P GT IRV KNL
Sbjct: 501 EMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNL 560
Query: 529 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
RVC DCH A K IS I R++++RD RFHHF+DG CSCGD+W
Sbjct: 561 RVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 133/263 (50%), Gaps = 9/263 (3%)
Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF-------GKVDLAEKLFDEMPTKNLVT 165
+C L + +++ A +KS + + ++ + F + A LF+ M ++V
Sbjct: 38 KCNSLRELMQIQAYA-IKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVI 96
Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
+N+M GY + + L ++ GI P+ + S+L C+ +L+ G+Q+H L
Sbjct: 97 FNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSM 156
Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
K L + LI+MY +C D++ A +F I VV +NAMI+GYA+ + +AL
Sbjct: 157 KLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALS 216
Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
LF +M+ + +KP+ IT +++L +C G +DLG ++ + T ++D+
Sbjct: 217 LFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMF 275
Query: 346 GRAGKLVEAVDLIKKMPFKPQPA 368
+ G L +AV + +KM +K A
Sbjct: 276 AKCGSLDDAVSIFEKMRYKDTQA 298
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 114/248 (45%), Gaps = 10/248 (4%)
Query: 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI 108
+DV +A F R+ +N MI+G+ ++ +A LF M K N ++ +++
Sbjct: 178 EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237
Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAW----TAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
S G LD + K A S + TA+I + K G +D A +F++M K+
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ 297
Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQL 223
W+AMI Y + AE + + M ++P+ + +L CSH ++ G++ Q+
Sbjct: 298 AWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQM 357
Query: 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWNAMISGYAQHGKGEK 282
V K + ++ + + G+LEDA + ++ + W +++ + H +
Sbjct: 358 VSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDL 417
Query: 283 ALRLFDKM 290
A ++ +++
Sbjct: 418 AEKVSERI 425
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED----ACKLFLEIQ 260
+L S +SL+ Q+ KS + +D + + LI+ +C E A LF +
Sbjct: 33 ILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLIN-FCTESPTESSMSYARHLFEAMS 90
Query: 261 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
D+V +N+M GY++ + LF ++ ++G+ PD+ TF +LL AC A ++ G Q
Sbjct: 91 EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150
Query: 321 YF---------------DSMVNDYGIAAKPDHYTCMVDLL---------------GRAGK 350
+++N Y D C+ D + R +
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNR 210
Query: 351 LVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEF 388
EA+ L ++M KP ++LS+C + LDL ++
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/559 (38%), Positives = 324/559 (57%), Gaps = 12/559 (2%)
Query: 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWNTMISGF 80
L A ++ D+ +P + + N M+ S +FDF++R+ D N ++
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRA-HCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFL 114
Query: 81 VQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
VQ + R+ L + + + + +IS Y E G LD ++F P
Sbjct: 115 VQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDF 174
Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
V TAM++ + G V A KLF+ MP ++ + WNAMI+GY + + + L + +M
Sbjct: 175 VCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLE 234
Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
G++ N ++ SVL C+ L +L G+ H + ++ + T L+ +Y KCGD+E A
Sbjct: 235 GVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKA 294
Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312
++F ++ K+V TW++ ++G A +G GEK L LF MK +G+ P+++TFV++L C+
Sbjct: 295 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVV 354
Query: 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 372
G VD G ++FDSM N++GI + +HY C+VDL RAG+L +AV +I++MP KP A++ +
Sbjct: 355 GFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSS 414
Query: 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432
LL A R++K L+L A+ + L AN G YV L+NIYA WD+V+ +R SMK
Sbjct: 415 LLHASRMYKNLELGVLASKKMLELETAN-HGAYVLLSNIYADSNDWDNVSHVRQSMKSKG 473
Query: 433 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 492
V K PG S +EV VHEF GD+ HP+ I K++ +R++LAGY D + +
Sbjct: 474 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533
Query: 493 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 552
EE KE L HSEK AIAFG++ + PIR+ KNLRVCGDCH+ + IS I REIIVR
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593
Query: 553 DTTRFHHFKDGTCSCGDYW 571
D RFHHFKDG CSC +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 146/325 (44%), Gaps = 38/325 (11%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G L ++F+ IP PD V M++ DVV A F+ +P +D +WN MISG+
Sbjct: 157 GCLDSCHKVFNSIPCPDFVCRTAMVTAC-ARCGDVVFARKLFEGMPERDPIAWNAMISGY 215
Query: 81 VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK---AVELFKVAPVK-SV 132
Q +A ++F M + N V+ +++S + G LD+ A + +K +V
Sbjct: 216 AQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITV 275
Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
T ++ Y K G ++ A ++F M KN+ TW++ + G N + E L+L +M
Sbjct: 276 RLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQD 335
Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCK 245
G+ PNA + SVL GCS + + G Q F S ++ + P L+ +Y +
Sbjct: 336 GVTPNAVTFVSVLRGCSVVGFVDEG----QRHFDS--MRNEFGIEPQLEHYGCLVDLYAR 389
Query: 246 CGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
G LEDA + ++ K W++++ + E + KM +
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE------------ 437
Query: 305 LLLACNHAGLVDLGIQYFDSMVNDY 329
L NH V L Y DS ND+
Sbjct: 438 -LETANHGAYVLLSNIYADS--NDW 459
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/568 (39%), Positives = 339/568 (59%), Gaps = 22/568 (3%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLP----IKDTASWN 74
G++ A+ +FD++ DVV++N M+ C D+ AF F+ + + D
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDE---AFKLFEEMKDSNVMPDEMILC 216
Query: 75 TMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVK 130
++S + NM R ++ + E + + +A+++ Y G +D A E F+ V+
Sbjct: 217 NIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR 276
Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
++ TAM+SGY K G++D A+ +FD+ K+LV W MI+ YVE+ + ++ L++ M
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336
Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
GI+P+ S+ SV+ C++L L K VH + + L + + LI+MY KCG L+
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
+F ++ R++VV+W++MI+ + HG+ AL LF +MK E ++P+ +TFV +L C+
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456
Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
H+GLV+ G + F SM ++Y I K +HY CMVDL GRA L EA+++I+ MP I+
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516
Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
G+L+SACR+H L+L +FAA + L P + G V ++NIYA ++W+DV IR M+E
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEP-DHDGALVLMSNIYAREQRWEDVRNIRRVMEE 575
Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
NV K G S I+ HEF GD+ H + I+ KL E+ ++KLAGYVPD L
Sbjct: 576 KNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVD 635
Query: 491 VGEEVKEQLLLFHSEKLAIAFGLI-------KVPLGTPIRVFKNLRVCGDCHRATKYISA 543
V EE K+ L+L+HSEKLA+ FGL+ K G IR+ KNLRVC DCH K +S
Sbjct: 636 VEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSK 694
Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
+ +REIIVRD TRFH +K+G CSC DYW
Sbjct: 695 VYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 184/407 (45%), Gaps = 60/407 (14%)
Query: 26 AQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
A +F IP P + + +N L L S + A F+QR+ +
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLR-DLSRSSEPRATILFYQRI------------------R 103
Query: 85 NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
++ D F +P +VS +S E +L FK+A + T + Y
Sbjct: 104 HVGGRLDQFSFLPILKAVS---KVSALFEGMELHGVA--FKIATLCDPFVETGFMDMYAS 158
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
G+++ A +FDEM +++VTWN MI Y ++ KL M + P+ L ++
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218
Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------------------- 244
+ C +++ + +++ + ++ + DT LT L++MY
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNL 278
Query: 245 -----------KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293
KCG L+DA +F + ++KD+V W MIS Y + ++ALR+F++M
Sbjct: 279 FVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCS 338
Query: 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353
G+KPD ++ +++ AC + G++D ++ S ++ G+ ++ ++++ + G L
Sbjct: 339 GIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDA 397
Query: 354 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 398
D+ +KMP + + ++++A +H L+ FA M N+ P
Sbjct: 398 TRDVFEKMP-RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEP 443
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
+++ ++ N+ L + G L +++F+K+P+ +VVS++ M++ + ++ + A F
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHG-EASDALSLF 433
Query: 63 QRLPIKDT----ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIE 113
R+ ++ ++ ++ G + + + +F +M ++ +++ + M+ +
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGR 493
Query: 114 CGQLDKAVELFKVAPVKS-VVAWTAMISGYMKFGKVDLAE 152
L +A+E+ + PV S VV W +++S G+++L +
Sbjct: 494 ANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/510 (41%), Positives = 310/510 (60%), Gaps = 13/510 (2%)
Query: 73 WNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVELFKVA 127
WNT+I G+ + N A L+ M E ++ ++ +I + + V
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 128 PVKS-----VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDG 182
++S + +++ Y G V A K+FD+MP K+LV WN++I G+ EN E+
Sbjct: 148 -IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242
L L M GI+P+ ++ S+L C+ + +L LGK+VH + K L ++ + L+ +
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDL 266
Query: 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSIT 301
Y +CG +E+A LF E+ K+ V+W ++I G A +G G++A+ LF M+ EG+ P IT
Sbjct: 267 YARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEIT 326
Query: 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
FV +L AC+H G+V G +YF M +Y I + +H+ CMVDLL RAG++ +A + IK M
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSM 386
Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421
P +P I+ TLL AC VH DLAEFA + + L P N +G YV L+N+YA+ ++W DV
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEP-NHSGDYVLLSNMYASEQRWSDV 445
Query: 422 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481
+IR M + V K+PG+S +EVG VHEF GD+ HP+ +I+ KLKE+ R++ GYV
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505
Query: 482 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 541
P + V EE KE +++HSEK+AIAF LI P +PI V KNLRVC DCH A K +
Sbjct: 506 PQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLV 565
Query: 542 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
S + REI+VRD +RFHHFK+G+CSC DYW
Sbjct: 566 SKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 31/231 (13%)
Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
+V W +I GY + G A L+ EM LV
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLV-------------------------- 117
Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
P+ + ++ + ++ ++LG+ +H +V +S L+ +Y CGD+
Sbjct: 118 ----EPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVA 173
Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
A K+F ++ KD+V WN++I+G+A++GK E+AL L+ +M +G+KPD T V+LL AC
Sbjct: 174 SAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA 233
Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
G + LG + M+ G+ ++DL R G++ EA L +M
Sbjct: 234 KIGALTLGKRVHVYMIK-VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 118/250 (47%), Gaps = 23/250 (9%)
Query: 51 NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSA 106
N DV +A+ F ++P KD +WN++I+GF + +A L+ M K + + +
Sbjct: 168 NCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 227
Query: 107 MISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
++S + G L V + KV +++ + ++ Y + G+V+ A+ LFDEM KN
Sbjct: 228 LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKN 287
Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVH 221
V+W ++I G N + ++ ++L + M G+ P + +L CSH ++ G +
Sbjct: 288 SVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYF 347
Query: 222 QLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG 273
+ + ++ + P ++ + + G ++ A + + + +VV W ++
Sbjct: 348 RRM------REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGA 401
Query: 274 YAQHGKGEKA 283
HG + A
Sbjct: 402 CTVHGDSDLA 411
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K V WNSV+ GFA + GK ++A L+ ++ + + LL++ + A
Sbjct: 182 MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMNSKGIKPDGFTIVS-LLSACAKIGALT 239
Query: 61 FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
+R+ + ++ S N ++ + + + +A+ LF M +KNSVSW+++I G
Sbjct: 240 LGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299
Query: 113 ECGQLDKAVELFK 125
G +A+ELFK
Sbjct: 300 VNGFGKEAIELFK 312
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 252 ACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLAC 309
A K+F +I++ +V WN +I GYA+ G A L+ +M+ G+ +PD+ T+ L+ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
V LG + S+V G + ++ L G + A + KMP K
Sbjct: 132 TTMADVRLG-ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK 185
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/536 (40%), Positives = 319/536 (59%), Gaps = 24/536 (4%)
Query: 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA-KARDLFLAM-----PEKNSVSWSA 106
DD FD R+ SW +I+G+++ N+A +A +LF M E N ++S
Sbjct: 322 DDCRKVFD---RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS- 377
Query: 107 MISGYIECGQL-DKAV------ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
S + CG L D V + FK + ++IS ++K +++ A++ F+ +
Sbjct: 378 --SAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLS 435
Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
KNLV++N + G N E KLL + + +A + +S+L G +++ S++ G+Q
Sbjct: 436 EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ 495
Query: 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 279
+H V K L + LISMY KCG ++ A ++F ++ ++V++W +MI+G+A+HG
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555
Query: 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339
+ L F++M +EG+KP+ +T+VA+L AC+H GLV G ++F+SM D+ I K +HY
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615
Query: 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399
CMVDLL RAG L +A + I MPF+ ++ T L ACRVH +L + AA + L+P
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDP- 674
Query: 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 459
N Y+QL+NIYA KW++ +R MKE N+VK G SWIEVG +H+F GD HP
Sbjct: 675 NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHP 734
Query: 460 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAV----GEEVKEQLLLFHSEKLAIAFGLIK 515
I+++L L +K GYVPD + LH + E KE+LL HSEK+A+AFGLI
Sbjct: 735 NAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794
Query: 516 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
P+RVFKNLRVCGDCH A KYIS + REI++RD RFHHFKDG CSC DYW
Sbjct: 795 TSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 165/359 (45%), Gaps = 52/359 (14%)
Query: 69 DTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECG-QLDKA---V 121
D+ +N++IS + + + AKA D+F M +++ VSWSAM++ Y G +LD V
Sbjct: 96 DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155
Query: 122 ELFKVAPVKSVVAWTAMI-----SGYMKFGKVDL-------------------------- 150
E ++ V + +TA+I S ++ G+V L
Sbjct: 156 EFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKG 215
Query: 151 ------AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
A K+FD+M N+VTW MI ++ + + ++ M+ G + +LSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275
Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQR 261
C+ L +L LGKQ+H +S L D L+ MY KC G ++D K+F ++
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMED 333
Query: 262 KDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGI 319
V++W A+I+GY ++ +A+ LF +M +G ++P+ TF + AC + +G
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393
Query: 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378
Q G+A+ ++ + ++ ++ +A + + K + L CR
Sbjct: 394 QVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 47/284 (16%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--SCILLNSDDVVAAFDFFQRLPI 67
NSV++ F K +++DAQ F+ + + ++VSYN L +C LN + AF +
Sbjct: 412 NSVISMFVKS-DRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQ---AFKLLSEITE 467
Query: 68 KDTA----SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
++ ++ +++SG ++ K + + + N +A+IS Y +CG +D
Sbjct: 468 RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDT 527
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA 179
A +F ++V++WT+MI+G+ K G + L T+N MI
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHG-----------FAIRVLETFNQMIEE------- 569
Query: 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTP 238
G++PN + ++L CSH+ + G + + + +
Sbjct: 570 -------------GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYAC 616
Query: 239 LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE 281
++ + C+ G L DA + + + DV+ W + H E
Sbjct: 617 MVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTE 660
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/618 (36%), Positives = 341/618 (55%), Gaps = 50/618 (8%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----------------------DKIPQPDV 38
M+ + ++WNSV+AG A Q G +A LF +P+
Sbjct: 376 MSERDLISWNSVIAGIA-QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLS 434
Query: 39 VSYNIMLSCILLN--SDDVVA---------------AFDFFQRLPIKDTASWNTMISGFV 81
+S + + I +N SD V+ A F+R D +WN M++G+
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493
Query: 82 QKKNMAKARDLFLAMPEKNSVSWS-AMISGYIECGQL-----DKAVELFKVAPVKSVVAW 135
Q + K LF M ++ S + + + CG L K V + + + W
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553
Query: 136 --TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193
+ ++ Y+K G + A+ FD +P + V W MI+G +EN E + M +G
Sbjct: 554 VSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG 613
Query: 194 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253
+ P+ +++++ S L++L+ G+Q+H K D T L+ MY KCG ++DA
Sbjct: 614 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAY 673
Query: 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313
LF I+ ++ WNAM+ G AQHG+G++ L+LF +MK G+KPD +TF+ +L AC+H+G
Sbjct: 674 CLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733
Query: 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 373
LV ++ SM DYGI + +HY+C+ D LGRAG + +A +LI+ M + +++ TL
Sbjct: 734 LVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTL 793
Query: 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433
L+ACRV + + A L L P +++ YV L+N+YAA KWD++ R MK + V
Sbjct: 794 LAACRVQGDTETGKRVATKLLELEPLDSSA-YVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Query: 434 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 493
K PG+SWIEV +H F DR + + I+ K+K++ + +K GYVP+ +F L V E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912
Query: 494 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 553
E KE+ L +HSEKLA+AFGL+ P TPIRV KNLRVCGDCH A KYI+ + REI++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
Query: 554 TTRFHHFKDGTCSCGDYW 571
RFH FKDG CSCGDYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 191/448 (42%), Gaps = 67/448 (14%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILL-----NSDDVVAAFDFFQRLPIKDTASWNT 75
GK+K+ + LF+++P DVV +N+ML L + D+ +AF P + T
Sbjct: 194 GKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLA 253
Query: 76 MISG----FVQKKNMAKARDL---------------FLAMPEKNSV--SWSAMISGYIEC 114
ISG Q K+ A D +L + +++ ++ M+ +EC
Sbjct: 254 RISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVEC 313
Query: 115 GQLDKAVELFKVAPVKSV-------------------VAWTAMISGYMKFGKVDLAEKLF 155
Q+ + L V S+ ++I+ Y K K A +F
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 156 DEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSL 214
D M ++L++WN++IAG +N + + L ++ G++P+ +++SVL S L L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433
Query: 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274
L KQVH K D+ T LI Y + +++A LF E D+V WNAM++GY
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGY 492
Query: 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
Q G K L+LF M +G + D T + C ++ G Q V+ Y I +
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ-----VHAYAIKSG 547
Query: 335 PDH----YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA--EF 388
D + ++D+ + G + A +P P + T++S C + + A F
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVF 606
Query: 389 AAMNLFNLNP--------ANAAGCYVQL 408
+ M L + P A A+ C L
Sbjct: 607 SQMRLMGVLPDEFTIATLAKASSCLTAL 634
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 20/323 (6%)
Query: 7 VNWNSVLAGFAKQRG----KLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAF 59
V+WNS+LA +A+ ++ A LF + Q V + + LS +L L+S V A+
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS- 164
Query: 60 DFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
+ F K + ++G +++ + + + LF MP ++ V W+ M+ Y+E
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 115 GQLDKAVELFK------VAPVKSVVAWTAMISGY-MKFGKVDLAEKLFDEMPTKNLVTWN 167
G ++A++L + P + + A ISG G+V D ++ N
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284
Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
++ Y+ + LK M+ + + + +L + SL LG+QVH + K
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
L T LI+MYCK A +F + +D+++WN++I+G AQ+G +A+ LF
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404
Query: 288 DKMKDEGMKPDSITFVALLLACN 310
++ G+KPD T ++L A +
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAAS 427
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA-----EDGLKLLRMMIGL 192
+IS Y K G + A ++FD+MP ++LV+WN+++A Y ++S + L R++
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139
Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
+ + +LS +L C H + + H K L D L+++Y K G +++
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEG 199
Query: 253 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302
LF E+ +DVV WN M+ Y + G E+A+ L G+ P+ IT
Sbjct: 200 KVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 271
S L LGK H + + + LISMY KCG L A ++F ++ +D+V+WN+++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 272 SGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326
+ YAQ + ++A LF ++ + + +T +L C H+G V + F
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYA 171
Query: 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
G+ +V++ + GK+ E L ++MP++
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR 209
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/546 (40%), Positives = 315/546 (57%), Gaps = 33/546 (6%)
Query: 54 DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL----------AMPEKNSVS 103
DV AF F + + WNT+I ++++ + F+ + P+K++
Sbjct: 98 DVNYAFRVFDSIENHSSFMWNTLIRACAH--DVSRKEEAFMLYRKMLERGESSPDKHTFP 155
Query: 104 W----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
+ A I G+ E Q+ ++ K V +I Y G +DLA K+FDEMP
Sbjct: 156 FVLKACAYIFGFSEGKQVH--CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMP 213
Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219
++LV+WN+MI V + L+L R M P+ ++ SVL C+ L SL LG
Sbjct: 214 ERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTW 272
Query: 220 VHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
H + + + D LI MYCKCG L A ++F +Q++D+ +WNAMI G+A
Sbjct: 273 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332
Query: 277 HGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334
HG+ E+A+ FD+M D E ++P+S+TFV LL+ACNH G V+ G QYFD MV DY I
Sbjct: 333 HGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPA 392
Query: 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC-RVHKRLDLAEFAAMNL 393
+HY C+VDL+ RAG + EA+D++ MP KP I+ +LL AC + ++L+E A N+
Sbjct: 393 LEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNI 452
Query: 394 FNL------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 447
+ N +G YV L+ +YA+ +W+DV +R M E+ + K PG S IE+ +
Sbjct: 453 IGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGI 512
Query: 448 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA--LHAVGEEVKEQLLLFHSE 505
HEF +GD HP+ I+++LK ++ R++ GY+PD A + A + KE L HSE
Sbjct: 513 SHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSE 572
Query: 506 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 565
+LAIAFGLI +P TPIR+FKNLRVC DCH TK IS + EIIVRD RFHHFKDG+C
Sbjct: 573 RLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSC 632
Query: 566 SCGDYW 571
SC DYW
Sbjct: 633 SCLDYW 638
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN-SWAEDGLKLLRMMIGLG-IRPNASSLS 202
F V+ A ++FD + + WN +I + S E+ L R M+ G P+ +
Sbjct: 96 FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFP 155
Query: 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262
VL C+++ GKQVH + K D LI +Y CG L+ A K+F E+ +
Sbjct: 156 FVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 215
Query: 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
+V+WN+MI + G+ + AL+LF +M+ +PD T ++L AC G + LG
Sbjct: 216 SLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLG 270
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 52/275 (18%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G L A+++FD++P+ +V SWN+MI
Sbjct: 200 GCLDLARKVFDEMPERSLV--------------------------------SWNSMIDAL 227
Query: 81 VQKKNMAKARDLFLAMP---EKNSVSWSAMIS-----GYIECGQLDKAVELFK--VAPVK 130
V+ A LF M E + + +++S G + G A L K V
Sbjct: 228 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 287
Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
V+ ++I Y K G + +AE++F M ++L +WNAMI G+ + AE+ + M+
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347
Query: 191 GL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYC 244
+RPN+ + +L+ C+H + G+Q ++ + P + + LI+
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA--- 404
Query: 245 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 278
+ G + +A + + + K D V W +++ + G
Sbjct: 405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKG 439
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/566 (37%), Positives = 326/566 (57%), Gaps = 13/566 (2%)
Query: 16 FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
F K L A +F +I P++ +N+++ C ++ AF F+ ++ +K +
Sbjct: 60 FNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPS-KAFGFYTQM-LKSRIWPDN 117
Query: 76 MISGFVQKKNMAKARDLFLAMPEKNSVSW---------SAMISGYIECGQLDKAVELFKV 126
+ F+ K + L V + ++++ Y CG + A +F
Sbjct: 118 ITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQ 177
Query: 127 APVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
+ VV+WT+M++GY K G V+ A ++FDEMP +NL TW+ MI GY +N+ E + L
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246
M G+ N + + SV+ C+HL +L+ G++ ++ V KS + + T L+ M+ +C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306
GD+E A +F + D ++W+++I G A HG KA+ F +M G P +TF A+L
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
AC+H GLV+ G++ +++M D+GI + +HY C+VD+LGRAGKL EA + I KM KP
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPN 417
Query: 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426
I G LL AC+++K ++AE L + P + +G YV L+NIYA +WD + +R
Sbjct: 418 APILGALLGACKIYKNTEVAERVGNMLIKVKPEH-SGYYVLLSNIYACAGQWDKIESLRD 476
Query: 427 SMKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKRMKLAGYVPDLE 485
MKE V K PG+S IE+ +++F G D+ HPE+ I K +E+ +++L GY +
Sbjct: 477 MMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTG 536
Query: 486 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 545
A V EE KE + HSEKLAIA+G++K GT IR+ KNLRVC DCH TK IS +
Sbjct: 537 DAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVY 596
Query: 546 KREIIVRDTTRFHHFKDGTCSCGDYW 571
RE+IVRD RFHHF++G CSC DYW
Sbjct: 597 GRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 41/230 (17%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + V+W S++AG+ K G +++A+E+FD++P ++ +++I
Sbjct: 178 MGFRDVVSWTSMVAGYCKC-GMVENAREMFDEMPHRNLFTWSI----------------- 219
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQL-- 117
MI+G+ + KA DLF M + V+ + M+S C L
Sbjct: 220 ---------------MINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGA 264
Query: 118 ----DKAVE-LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAG 172
++A E + K +++ TA++ + + G ++ A +F+ +P + ++W+++I G
Sbjct: 265 LEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKG 324
Query: 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
+ A + MI LG P + ++VL CSH ++ G ++++
Sbjct: 325 LAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/561 (38%), Positives = 330/561 (58%), Gaps = 14/561 (2%)
Query: 20 RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
+G++ A + I + D+V N +L+ + + A F+++P +D +W T+ISG
Sbjct: 78 QGRIVHAH-ILQSIFRHDIVMGNTLLN-MYAKCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 80 FVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIE-----CGQLDKAVELFKVAPVK 130
+ Q A F M N + S++I CG K
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF-CVKCGFDS 194
Query: 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190
+V +A++ Y ++G +D A+ +FD + ++N V+WNA+IAG+ S E L+L + M+
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250
G RP+ S +S+ CS L+ GK VH + KS A L+ MY K G +
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIH 314
Query: 251 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310
DA K+F + ++DVV+WN++++ YAQHG G++A+ F++M+ G++P+ I+F+++L AC+
Sbjct: 315 DARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Query: 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 370
H+GL+D G Y++ M D GI + HY +VDLLGRAG L A+ I++MP +P AI+
Sbjct: 375 HSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433
Query: 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430
LL+ACR+HK +L +AA ++F L+P + G +V L NIYA+ +W+D AR+R MKE
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKE 492
Query: 431 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 490
+ V K P SW+E+ +H F + D HP+ I K +E+ ++K GYVPD +
Sbjct: 493 SGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVH 552
Query: 491 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550
V ++ +E L +HSEK+A+AF L+ P G+ I + KN+RVCGDCH A K S + REII
Sbjct: 553 VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612
Query: 551 VRDTTRFHHFKDGTCSCGDYW 571
VRDT RFHHFKDG CSC DYW
Sbjct: 613 VRDTNRFHHFKDGNCSCKDYW 633
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 43/271 (15%)
Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
+++L C+ L G+ VH + +S D L++MY KCG LE+A K+F ++ +
Sbjct: 64 NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123
Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--------CNH-- 311
+D VTW +ISGY+QH + AL F++M G P+ T +++ A C H
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183
Query: 312 ----------------AGLVDLGIQY---------FDSMVNDYGIAAKPDHYTCMVDLLG 346
+ L+DL +Y FD++ + ++ + ++
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHA 238
Query: 347 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403
R +A++L + M F+P + +L AC L+ ++ + A
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298
Query: 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 434
L ++YA D +I + + +VV
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 329
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIML----SCILLNS 52
+ + V+WN+++AG A++ G K A ELF + +P SY + S L
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEK-ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQ 280
Query: 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
V A+ + A NT++ + + ++ AR +F + +++ VSW+++++ Y
Sbjct: 281 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339
Query: 113 ECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV--TW 166
+ G +AV E+ +V + +++ ++++ G +D ++ M +V W
Sbjct: 340 QHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAW 399
Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
+ + + A D + LR + + I P A+ ++L C + +LG + VF+
Sbjct: 400 HYVTVVDLLGR-AGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFE 458
Query: 227 -SPLCKDTTALTPLISMYCKCGDLEDACKLFLE-----IQRKDVVTW----NAM---ISG 273
P D L ++Y G DA ++ + ++++ +W NA+ ++
Sbjct: 459 LDP--DDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAN 516
Query: 274 YAQHGKGEKALRLFD----KMKDEGMKPDS 299
+H + E+ R ++ K+K+ G PD+
Sbjct: 517 DERHPQREEIARKWEEVLAKIKELGYVPDT 546
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 300/527 (56%), Gaps = 42/527 (7%)
Query: 86 MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-------------KVAPVKS- 131
+ AR + MPEKN VSW+AMIS Y + G +A+ +F A V +
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162
Query: 132 ----------------VVAW---------TAMISGYMKFGKVDLAEKLFDEMPTKNLVTW 166
+V W ++++ Y K G++ A ++F+ +P +++V+
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222
Query: 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
A+IAGY + E+ L++ + G+ PN + +S+L S L+ L GKQ H V +
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282
Query: 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 286
L LI MY KCG+L A +LF + + ++WNAM+ GY++HG G + L L
Sbjct: 283 RELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL 342
Query: 287 FDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYTCMVDL 344
F M+DE +KPD++T +A+L C+H + D G+ FD MV +YG +HY C+VD+
Sbjct: 343 FRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDM 402
Query: 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404
LGRAG++ EA + IK+MP KP + G+LL ACRVH +D+ E L + P NA G
Sbjct: 403 LGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENA-GN 461
Query: 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 464
YV L+N+YA+ +W DV +R M + V K PG SWI+ +H F + DR HP +
Sbjct: 462 YVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEV 521
Query: 465 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 524
K+KE+ +MK AGYVPDL L+ V EE KE++LL HSEKLA+ FGLI G PIRV
Sbjct: 522 LAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRV 581
Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
FKNLR+C DCH K S + +RE+ +RD RFH DG CSCGDYW
Sbjct: 582 FKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 12/225 (5%)
Query: 145 FGKVDL---AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201
+GK D A K+ DEMP KN+V+W AMI+ Y + + + L + M+ +PN +
Sbjct: 97 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTF 156
Query: 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 261
++VL C S L LGKQ+H L+ K + L+ MY K G +++A ++F +
Sbjct: 157 ATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPE 216
Query: 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321
+DVV+ A+I+GYAQ G E+AL +F ++ EGM P+ +T+ +LL A + L+D G Q
Sbjct: 217 RDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQA 276
Query: 322 FDSMVND----YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
++ Y + ++D+ + G L A L MP
Sbjct: 277 HCHVLRRELPFYAVLQNS-----LIDMYSKCGNLSYARRLFDNMP 316
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 8/271 (2%)
Query: 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204
F + L + F PT ++ I+ N ++ L + M LG ++
Sbjct: 2 FNLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAM---LGPEMGFHGYDAL 58
Query: 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264
L C +L+ G++VH + K+ T T L+ Y KC LEDA K+ E+ K+V
Sbjct: 59 LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118
Query: 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324
V+W AMIS Y+Q G +AL +F +M KP+ TF +L +C A + LG Q
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-IHG 177
Query: 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384
++ + + + ++D+ +AG++ EA ++ + +P + + + + +L
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAG----YAQLG 233
Query: 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415
L E A L+ + YV A++ A+
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTAL 264
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 80/267 (29%)
Query: 23 LKDAQELFDKIPQPDVVSYNIMLS---------------CILLNSDDVVAAFDFFQRLPI 67
L+DA+++ D++P+ +VVS+ M+S ++ SD F F L
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162
Query: 68 KDTAS--------------WN---------TMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
AS WN +++ + + + +AR++F +PE++ VS
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222
Query: 105 SAMISGYIECGQLDKAVELF---------------------------------------- 124
+A+I+GY + G ++A+E+F
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282
Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
+ P +V+ ++I Y K G + A +LFD MP + ++WNAM+ GY ++ + L+
Sbjct: 283 RELPFYAVLQ-NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 341
Query: 185 LLRMMIGLG-IRPNASSLSSVLLGCSH 210
L R+M ++P+A +L +VL GCSH
Sbjct: 342 LFRLMRDEKRVKPDAVTLLAVLSGCSH 368
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 30/225 (13%)
Query: 7 VNWN---------SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVV 56
V WN S+L +AK G++K+A+E+F+ +P+ DVVS I+ L D+
Sbjct: 180 VKWNYDSHIFVGSSLLDMYAKA-GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE-- 236
Query: 57 AAFDFFQRLPIKDT-------ASWNTMISG--FVQKKNMAKARDLFLAMPEKNSVSWSAM 107
A + F RL + AS T +SG + A L +P +V +++
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP-FYAVLQNSL 295
Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG----KVDLAEKLFDEMPTK-N 162
I Y +CG L A LF P ++ ++W AM+ GY K G ++L + DE K +
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVL 205
VT A+++G + GL + M+ G +P ++
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIV 400
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/616 (36%), Positives = 348/616 (56%), Gaps = 46/616 (7%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAA 58
M+V+ +V++N+++ G+ K + + + + Q PD+++ + +L D +A
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAK 327
Query: 59 FDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
+ + L + ++ N +I + + +M ARD+F +M K++VSW+++ISGYI+ G
Sbjct: 328 YIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSG 387
Query: 116 QLDKAVELFKVA----------------------------------PVKSVV-----AWT 136
L +A++LFK+ +KS +
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSN 447
Query: 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196
A+I Y K G+V + K+F M T + VTWN +I+ V GL++ M + P
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVP 507
Query: 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256
+ ++ L C+ L++ +LGK++H + + + LI MY KCG LE++ ++F
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVF 567
Query: 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316
+ R+DVVTW MI Y +G+GEKAL F M+ G+ PDS+ F+A++ AC+H+GLVD
Sbjct: 568 ERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVD 627
Query: 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376
G+ F+ M Y I +HY C+VDLL R+ K+ +A + I+ MP KP +I+ ++L A
Sbjct: 628 EGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRA 687
Query: 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436
CR ++ AE + + LNP + G + +N YAA++KWD V+ IR S+K+ ++ K
Sbjct: 688 CRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKN 746
Query: 437 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHAVGEEV 495
PGYSWIEVG VH F SGD P+ +I++ L+ L M GY+PD E + + EE
Sbjct: 747 PGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEE 806
Query: 496 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 555
K +L+ HSE+LAIAFGL+ GTP++V KNLRVCGDCH TK IS I REI+VRD
Sbjct: 807 KRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDAN 866
Query: 556 RFHHFKDGTCSCGDYW 571
RFH FKDGTCSC D W
Sbjct: 867 RFHLFKDGTCSCKDRW 882
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 191/406 (47%), Gaps = 47/406 (11%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
M V+ V+WNS+++G++ G ++A E++ ++ +V + +S +L
Sbjct: 167 MPVRDLVSWNSLISGYSSH-GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQ 225
Query: 50 -----------------LNSDDVVAAFDFFQR----------LPIKDTASWNTMISGFVQ 82
+ ++ +VA + F+R + ++D+ S+NTMI G+++
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285
Query: 83 KKNMAKARDLFLA-----MPEKNSVSWSAMISGYIECGQLDKAV--ELFKVAPVKSVVAW 135
+ + ++ +FL P+ +VS G++ L K + + K V
Sbjct: 286 LEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVR 345
Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
+I Y K G + A +F+ M K+ V+WN++I+GY+++ + +KL +MM+ + +
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQ 405
Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
+ + ++ + L+ L+ GK +H KS +C D + LI MY KCG++ D+ K+
Sbjct: 406 ADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKI 465
Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315
F + D VTWN +IS + G L++ +M+ + PD TF+ L C
Sbjct: 466 FSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAK 525
Query: 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361
LG + ++ +G ++ ++++ + G L + + ++M
Sbjct: 526 RLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERM 570
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 177/386 (45%), Gaps = 45/386 (11%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M ++ + + L + G L A+++FD++P D+V
Sbjct: 135 MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLV--------------------- 173
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGY----- 111
SWN++ISG+ +A +++ + +S + S+++ +
Sbjct: 174 -----------SWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLV 222
Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
++ GQ L K VV +++ Y+KF + A ++FDEM ++ V++N MI
Sbjct: 223 VKQGQGLHGFAL-KSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281
Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231
GY++ E+ +++ + +P+ ++SSVL C HL L L K ++ + K+
Sbjct: 282 GYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVL 340
Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291
++T LI +Y KCGD+ A +F ++ KD V+WN++ISGY Q G +A++LF M
Sbjct: 341 ESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMM 400
Query: 292 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
+ D IT++ L+ + G + + GI ++D+ + G++
Sbjct: 401 IMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALIDMYAKCGEV 459
Query: 352 VEAVDLIKKMPFKPQPAIFGTLLSAC 377
+++ + M + T++SAC
Sbjct: 460 GDSLKIFSSMG-TGDTVTWNTVISAC 484
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 161/318 (50%), Gaps = 13/318 (4%)
Query: 57 AAFDFFQRL-PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI--- 108
++ F+R+ P K+ WN++I F + +A + + + E + ++ ++I
Sbjct: 57 SSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC 116
Query: 109 SGYIECGQLDKAVE-LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167
+G + D E + + + A++ Y + G + A ++FDEMP ++LV+WN
Sbjct: 117 AGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWN 176
Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
++I+GY + + E+ L++ + I P++ ++SSVL +L ++ G+ +H KS
Sbjct: 177 SLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKS 236
Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
+ L++MY K DA ++F E+ +D V++N MI GY + E+++R+F
Sbjct: 237 GVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF 296
Query: 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLG 346
+ D+ KPD +T ++L AC H L DL + +Y + + G + ++D+
Sbjct: 297 LENLDQ-FKPDLLTVSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYA 353
Query: 347 RAGKLVEAVDLIKKMPFK 364
+ G ++ A D+ M K
Sbjct: 354 KCGDMITARDVFNSMECK 371
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/554 (38%), Positives = 323/554 (58%), Gaps = 9/554 (1%)
Query: 26 AQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
A+ LFD+ ++ N M S + + + + F+ ++ D S + IS Q
Sbjct: 290 AKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Query: 83 KKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
+N+ + + SW +A+I Y++C + D A +F K+VV W ++
Sbjct: 350 LRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSI 409
Query: 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL-RMMIGLGIRPN 197
++GY++ G+VD A + F+ MP KN+V+WN +I+G V+ S E+ +++ M G+ +
Sbjct: 410 VAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNAD 469
Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
++ S+ C HL +L L K ++ + K+ + D T L+ M+ +CGD E A +F
Sbjct: 470 GVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFN 529
Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
+ +DV W A I A G E+A+ LFD M ++G+KPD + FV L AC+H GLV
Sbjct: 530 SLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQ 589
Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 377
G + F SM+ +G++ + HY CMVDLLGRAG L EAV LI+ MP +P I+ +LL+AC
Sbjct: 590 GKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAAC 649
Query: 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 437
RV +++A +AA + L P G YV L+N+YA+ +W+D+A++RLSMKE + K P
Sbjct: 650 RVQGNVEMAAYAAEKIQVLAPERT-GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPP 708
Query: 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 497
G S I++ HEF SGD HPE+ +I L E+ +R G+VPDL L V E+ K
Sbjct: 709 GTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKI 768
Query: 498 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 557
+L HSEKLA+A+GLI GT IR+ KNLRVC DCH K+ S + REII+RD RF
Sbjct: 769 FMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRF 828
Query: 558 HHFKDGTCSCGDYW 571
H+ + G CSCGD+W
Sbjct: 829 HYIRQGKCSCGDFW 842
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 153/355 (43%), Gaps = 46/355 (12%)
Query: 57 AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGY 111
+A F + ++ SW +MI G+ ++ A DLF M NSV+ +IS
Sbjct: 187 SARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISAC 246
Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISG----YMKFGKVDLAEKLFDEMPTKNLVTWN 167
+ L+ +++ + M+S YMK +D+A++LFDE NL N
Sbjct: 247 AKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN 306
Query: 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227
AM + YV + L + +M+ G+RP+ S+ S + CS L ++ GK H V ++
Sbjct: 307 AMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN 366
Query: 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
LI MY KC + A ++F + K VVTWN++++GY ++G+ + A F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426
Query: 288 DKMKD--------------------------------EGMKPDSITFVALLLACNHAGLV 315
+ M + EG+ D +T +++ AC H G +
Sbjct: 427 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486
Query: 316 DLG--IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 368
DL I Y+ + GI T +VD+ R G A+ + + + A
Sbjct: 487 DLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 130/248 (52%), Gaps = 9/248 (3%)
Query: 73 WNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW--SAMISGYIECGQLDKAVELF 124
+N++I G+ +A LFL M P+K + + SA + + +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 125 KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLK 184
K+ K + +++ Y + G++D A K+FDEM +N+V+W +MI GY +A+D +
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 185 L-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
L RM+ + PN+ ++ V+ C+ L L+ G++V+ + S + + ++ L+ MY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281
Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
KC ++ A +LF E ++ NAM S Y + G +AL +F+ M D G++PD I+ +
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341
Query: 304 ALLLACNH 311
+ + +C+
Sbjct: 342 SAISSCSQ 349
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
+N++I GY + + + L M+ GI P+ + L C+ + G Q+H L+
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
K KD L+ Y +CG+L+ A K+F E+ ++VV+W +MI GYA+ + A+
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 286 LFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344
LF +M +DE + P+S+T V ++ AC ++ G + + + + + GI + +VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDM 280
Query: 345 LGRAGKLVEAVDLIKKM 361
+ A+D+ K++
Sbjct: 281 YMKC----NAIDVAKRL 293
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 46/303 (15%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M+ KT V WNS++AG+ + G++ A E F+ +P+ ++V
Sbjct: 398 MSNKTVVTWNSIVAGYV-ENGEVDAAWETFETMPEKNIV--------------------- 435
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA--MISGYIECGQ-- 116
SWNT+ISG VQ +A ++F +M + V+ M+S CG
Sbjct: 436 -----------SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
Query: 117 -LDKAVELF----KVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIA 171
LD A ++ K V T ++ + + G + A +F+ + +++ W A I
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544
Query: 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLC 230
AE ++L MI G++P+ + L CSH +Q GK++ + K +
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604
Query: 231 KDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288
+ ++ + + G LE+A +L + ++ DV+ WN++++ G E A +
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAE 663
Query: 289 KMK 291
K++
Sbjct: 664 KIQ 666
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 246/649 (37%), Positives = 353/649 (54%), Gaps = 88/649 (13%)
Query: 8 NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP- 66
++N ++ +AK K+ A++LFD+IPQPD VSYN ++S ++ + AA F+R+
Sbjct: 76 SYNVIVKAYAKD-SKIHIARQLFDEIPQPDTVSYNTLISG-YADARETFAAMVLFKRMRK 133
Query: 67 -----------------------IKDTASW-------------NTMISGFVQKKNMAKAR 90
IK + N ++ + + + +A
Sbjct: 134 LGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193
Query: 91 DLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFK--------------VAPVKSVVAW 135
+F M E ++ VSW++MI Y + + KA+ L+K + + ++ +
Sbjct: 194 SVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSL 253
Query: 136 TAMISG-------------------------YMKFGKVDL---AEKLFDEMPTKNLVTWN 167
+I G Y K G D +EK+F E+ + +LV WN
Sbjct: 254 DHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWN 313
Query: 168 AMIAGYVEN-SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226
MI+GY N +E+ +K R M +G RP+ S V CS+LSS KQ+H L K
Sbjct: 314 TMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIK 373
Query: 227 SPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
S + + ++ LIS+Y K G+L+DA +F + + V++N MI GYAQHG G +AL
Sbjct: 374 SHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALL 433
Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
L+ +M D G+ P+ ITFVA+L AC H G VD G +YF++M + I + +HY+CM+DLL
Sbjct: 434 LYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLL 493
Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
GRAGKL EA I MP+KP + LL ACR HK + LAE AA L + P AA Y
Sbjct: 494 GRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPL-AATPY 552
Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
V LAN+YA +KW+++A +R SM+ + K PG SWIEV H F + D HP + ++
Sbjct: 553 VMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVN 612
Query: 466 EKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 522
E L+E+ K+MK GYV D ++A+ GE +E L HSEKLA+AFGL+ G +
Sbjct: 613 EYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEEL 672
Query: 523 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
V KNLR+CGDCH A K++SA+ REIIVRD RFH FKDG CSCGDYW
Sbjct: 673 VVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 172/355 (48%), Gaps = 16/355 (4%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G+L A+ F +P+V SYN+++ +S + A F +P DT S+NT+ISG+
Sbjct: 57 GRLSYARAAFYSTEEPNVFSYNVIVKAYAKDS-KIHIARQLFDEIPQPDTVSYNTLISGY 115
Query: 81 VQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVA----PVKSV 132
+ A LF M E + + S +I+ + L K + F V+ SV
Sbjct: 116 ADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSV 175
Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
A ++ Y K G + A +F M ++ V+WN+MI Y ++ L L + MI
Sbjct: 176 N--NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIF 233
Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE- 250
G + + +L+SVL + L L G+Q H + K+ +++ + LI Y KCG +
Sbjct: 234 KGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDG 293
Query: 251 --DACKLFLEIQRKDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLL 307
D+ K+F EI D+V WN MISGY+ + + E+A++ F +M+ G +PD +FV +
Sbjct: 294 MYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362
AC++ Q + + + + ++ L ++G L +A + +MP
Sbjct: 354 ACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 140/307 (45%), Gaps = 16/307 (5%)
Query: 90 RDLFL-----AMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSVVAWTAMI 139
RDLF A+ K+ V+ S +S Y +CG+L A F +V ++ ++
Sbjct: 22 RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIV 81
Query: 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199
Y K K+ +A +LFDE+P + V++N +I+GY + + L + M LG +
Sbjct: 82 KAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGF 141
Query: 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259
+LS ++ C + L KQ+H ++ ++ Y K G L +A +F +
Sbjct: 142 TLSGLIAAC--CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199
Query: 260 QR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318
+D V+WN+MI Y QH +G KAL L+ +M +G K D T ++L A + G
Sbjct: 200 DELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259
Query: 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK--KMPFKPQPAIFGTLLSA 376
Q+ ++ G + ++D + G D K + P ++ T++S
Sbjct: 260 RQFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISG 318
Query: 377 CRVHKRL 383
+++ L
Sbjct: 319 YSMNEEL 325
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 46/178 (25%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
++ N+ L + G L+DA+ +FD++P+ + VS+
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMPELNAVSF------------------------- 415
Query: 67 IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVE 122
N MI G+ Q + +A L+ M + N +++ A++S CG++D+ E
Sbjct: 416 -------NCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE 468
Query: 123 L-------FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK-NLVTWNAMIAG 172
FK+ P ++ MI + GK++ AE+ D MP K V W A++
Sbjct: 469 YFNTMKETFKIEP--EAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGA 524
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/628 (36%), Positives = 338/628 (53%), Gaps = 71/628 (11%)
Query: 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAF 59
N +T + + + A F K G+++D + + I+ C L+ D+ A
Sbjct: 32 NCRTIRDLSQIHAVFIKS-GQMRDT-----------LAAAEILRFCATSDLHHRDLDYAH 79
Query: 60 DFFQRLPIKDTASWNTMISGFVQ--KKNMAKARDLFLAM-----PEKNSVSW-------- 104
F ++P ++ SWNT+I GF + + A LF M E N ++
Sbjct: 80 KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 139
Query: 105 ---------------------------SAMISGYIECGQLDKAVELFKVAPVK------- 130
S ++ Y+ CG + A LF ++
Sbjct: 140 KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199
Query: 131 -------SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183
+V W MI GYM+ G A LFD+M +++V+WN MI+GY N + +D +
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259
Query: 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243
++ R M IRPN +L SVL S L SL+LG+ +H S + D + LI MY
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMY 319
Query: 244 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303
KCG +E A +F + R++V+TW+AMI+G+A HG+ A+ F KM+ G++P + ++
Sbjct: 320 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYI 379
Query: 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363
LL AC+H GLV+ G +YF MV+ G+ + +HY CMVDLLGR+G L EA + I MP
Sbjct: 380 NLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 439
Query: 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423
KP I+ LL ACR+ +++ + A L ++ P + +G YV L+N+YA+ W +V+
Sbjct: 440 KPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHD-SGAYVALSNMYASQGNWSEVSE 498
Query: 424 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 483
+RL MKE ++ K PG S I++ V+HEF D HP+ I+ L E+ +++LAGY P
Sbjct: 499 MRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPI 558
Query: 484 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 543
L + EE KE +L +HSEK+A AFGLI G PIR+ KNLR+C DCH + K IS
Sbjct: 559 TTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISK 618
Query: 544 IEKREIIVRDTTRFHHFKDGTCSCGDYW 571
+ KR+I VRD RFHHF+DG+CSC DYW
Sbjct: 619 VYKRKITVRDRKRFHHFQDGSCSCMDYW 646
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/509 (42%), Positives = 295/509 (57%), Gaps = 12/509 (2%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL------FKVA 127
N ++S + + +++AR + M ++ VSW++++ GY + + D A+E+ K++
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238
Query: 128 PVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLR 187
+A V + +F +M K+LV+WN MI Y++N+ + ++L
Sbjct: 239 HDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYS 298
Query: 188 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247
M G P+A S++SVL C S+L LGK++H + + L + LI MY KCG
Sbjct: 299 RMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCG 358
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
LE A +F ++ +DVV+W AMIS Y G+G A+ LF K++D G+ PDSI FV L
Sbjct: 359 CLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLA 418
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367
AC+HAGL++ G F M + Y I + +H CMVDLLGRAGK+ EA I+ M +P
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478
Query: 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427
++G LL ACRVH D+ AA LF L P +G YV L+NIYA +W++V IR
Sbjct: 479 RVWGALLGACRVHSDTDIGLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNI 537
Query: 428 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487
MK + K PG S +EV ++H F GDR HP+ I+ +L L K+MK GYVPD E A
Sbjct: 538 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESA 597
Query: 488 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVP-----LGTPIRVFKNLRVCGDCHRATKYIS 542
LH V EE KE L HSEKLAI F L+ IR+ KNLR+CGDCH A K IS
Sbjct: 598 LHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLIS 657
Query: 543 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
I REII+RDT RFH F+ G CSCGDYW
Sbjct: 658 QITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197
++ Y V A K+FDE+P +N++ N MI YV N + +G+K+ M G +RP+
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 257
+ VL CS ++ +G+++H K L L+SMY KCG L +A +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 258 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317
E+ R+DVV+WN+++ GYAQ+ + + AL + +M+ + D+ T +LL A ++ +
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN- 258
Query: 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLL 374
+ Y M G + + M+ + + VEAV+L +M F+P ++L
Sbjct: 259 -VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316
Query: 375 SAC 377
AC
Sbjct: 317 PAC 319
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 92/414 (22%), Positives = 181/414 (43%), Gaps = 72/414 (17%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
M+ + V+WNS++ G+A Q + DA E+ ++ + ++ +L +++V
Sbjct: 201 MSRRDVVSWNSLVVGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259
Query: 56 VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
+ D F ++ K SWN MI +++ +A +L+ M E ++VS ++++
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPA- 318
Query: 112 IECG---------QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162
CG ++ +E K+ P +++ A+I Y K G ++ A +F+ M +++
Sbjct: 319 --CGDTSALSLGKKIHGYIERKKLIP--NLLLENALIDMYAKCGCLEKARDVFENMKSRD 374
Query: 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222
+V+W AMI+ Y + D + L + G+ P++ + + L CSH L+ G+ +
Sbjct: 375 VVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434
Query: 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
L+ D +TP + AC M+ + GK ++
Sbjct: 435 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 464
Query: 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AKPDHYTCM 341
A R ++D M+P+ + ALL AC D+G+ D + + +A + +Y +
Sbjct: 465 AYRF---IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL---FQLAPEQSGYYVLL 518
Query: 342 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVHKRLD 384
++ +AG+ E +++K K P I T L R H + D
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSD 572
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
+ VH + L +++ L+ Y D+ A K+F EI ++V+ N MI Y +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337
G + +++F M ++PD TF +L AC+ +G + +G + S G+++
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFV 177
Query: 338 YTCMVDLLGRAGKLVEAVDLIKKM 361
+V + G+ G L EA ++ +M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/542 (38%), Positives = 306/542 (56%), Gaps = 40/542 (7%)
Query: 69 DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--- 125
D A+ +++S + + A LF +P+++ V+W+A+ SGY G+ +A++LFK
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204
Query: 126 ---VAP---------------------------------VKSVVAWTAMISGYMKFGKVD 149
V P K+ T +++ Y K GK++
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264
Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
A +FD M K++VTW+ MI GY NS+ ++G++L M+ ++P+ S+ L C+
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324
Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
L +L LG+ L+ + + LI MY KCG + ++F E++ KD+V NA
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
ISG A++G + + +F + + G+ PD TF+ LL C HAGL+ G+++F+++ Y
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444
Query: 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 389
+ +HY CMVDL GRAG L +A LI MP +P ++G LLS CR+ K LAE
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETV 504
Query: 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 449
L L P N AG YVQL+NIY+ +WD+ A +R M + + K+PGYSWIE+ VH
Sbjct: 505 LKELIALEPWN-AGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVH 563
Query: 450 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 509
EF + D+ HP I+ KL++L M+L G+VP EF V EE KE++L +HSEKLA+
Sbjct: 564 EFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAV 623
Query: 510 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 569
A GLI G IRV KNLRVCGDCH K IS I +REI+VRD RFH F +G+CSC D
Sbjct: 624 ALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCND 683
Query: 570 YW 571
YW
Sbjct: 684 YW 685
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 16/353 (4%)
Query: 58 AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
++ F + +N++I+GFV + DLFL++ + + ++ ++
Sbjct: 64 SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123
Query: 114 CGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM 169
++L K V A T+++S Y G+++ A KLFDE+P +++VTW A+
Sbjct: 124 ASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTAL 183
Query: 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 229
+GY + + + L + M+ +G++P++ + VL C H+ L G+ + + + + +
Sbjct: 184 FSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEM 243
Query: 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289
K++ T L+++Y KCG +E A +F + KD+VTW+ MI GYA + ++ + LF +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303
Query: 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349
M E +KPD + V L +C G +DLG ++ S+++ + ++D+ + G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCG 362
Query: 350 KLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
+ ++ K+M K AI G A H +L A F ++P
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGL---AKNGHVKLSFAVFGQTEKLGISP 412
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 286/442 (64%), Gaps = 3/442 (0%)
Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI- 190
V T ++ Y +FG VD A +F MP +N+V+W+AMIA Y +N A + L+ R M+
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 191 -GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249
PN+ ++ SVL C+ L++L+ GK +H + + L ++ L++MY +CG L
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336
Query: 250 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309
E ++F + +DVV+WN++IS Y HG G+KA+++F++M G P +TFV++L AC
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396
Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369
+H GLV+ G + F++M D+GI + +HY CMVDLLGRA +L EA +++ M +P P +
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456
Query: 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429
+G+LL +CR+H ++LAE A+ LF L P N AG YV LA+IYA + WD+V R++ ++
Sbjct: 457 WGSLLGSCRIHGNVELAERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVKKLLE 515
Query: 430 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 489
+ K+PG W+EV ++ F S D +P + IH L +L + MK GY+P + L+
Sbjct: 516 HRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLY 575
Query: 490 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 549
+ E KE+++L HSEKLA+AFGLI G PIR+ KNLR+C DCH TK+IS ++EI
Sbjct: 576 ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEI 635
Query: 550 IVRDTTRFHHFKDGTCSCGDYW 571
+VRD RFH FK+G CSCGDYW
Sbjct: 636 LVRDVNRFHRFKNGVCSCGDYW 657
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 7/222 (3%)
Query: 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195
T +I Y G VD A K+FD+ + + WNA+ E+ L L M +G+
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 196 PNASSLSSVLLGC----SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
+ + + VL C ++ L GK++H + + +T L+ MY + G ++
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDY 235
Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLAC 309
A +F + ++VV+W+AMI+ YA++GK +ALR F +M E P+S+T V++L AC
Sbjct: 236 ASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQAC 295
Query: 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351
++ G + + G+ + + +V + GR GKL
Sbjct: 296 ASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKL 336
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255
P+ + ++L C H SSL +VH+ + + +D T LI MY G ++ A K+
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC------ 309
F + +++ + WNA+ G GE+ L L+ KM G++ D T+ +L AC
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 310 -NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 364
NH + + + + G ++ T +VD+ R G + A + MP +
Sbjct: 195 VNHL----MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 56/287 (19%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M V+ V+W++++A +AK GK +A F + M+ +S + V
Sbjct: 243 MPVRNVVSWSAMIACYAKN-GKAFEALRTFRE-----------MMRETKDSSPNSVTMVS 290
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
Q +I G++ ++ + D L + SA+++ Y CG+L+
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGL----DSILPV-------ISALVTMYGRCGKLEVG 339
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180
+F + VV+W ++IS Y G A ++F+E
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE----------------------- 376
Query: 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPL 239
M+ G P + SVL CSH ++ GK++ + +++ K +
Sbjct: 377 --------MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACM 428
Query: 240 ISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
+ + + L++A K+ +++ + W +++ HG E A R
Sbjct: 429 VDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAER 475
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 307/527 (58%), Gaps = 10/527 (1%)
Query: 54 DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
D+ AF F +P D W+ MI+ F Q +A DLF+ M E N + S++++
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILN 356
Query: 110 GYI--ECGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT 165
G +C L + + + KV + A+I Y K K+D A KLF E+ +KN V+
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS 416
Query: 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225
WN +I GY + R + + + SS L C+ L+S+ LG QVH L
Sbjct: 417 WNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAI 476
Query: 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 285
K+ K LI MY KCGD++ A +F E++ DV +WNA+ISGY+ HG G +ALR
Sbjct: 477 KTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALR 536
Query: 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345
+ D MKD KP+ +TF+ +L C++AGL+D G + F+SM+ D+GI +HYTCMV LL
Sbjct: 537 ILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLL 596
Query: 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405
GR+G+L +A+ LI+ +P++P I+ +LSA + A +A + +NP + A Y
Sbjct: 597 GRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEA-TY 655
Query: 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 465
V ++N+YA K+W +VA IR SMKE V K PG SWIE VH F G HP++ I+
Sbjct: 656 VLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLIN 715
Query: 466 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIRV 524
L+ L + AGYVPD L + +E K++ L HSE+LA+A+GL+++P I +
Sbjct: 716 GMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILI 775
Query: 525 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
KNLR+C DCH A K IS+I +R++++RD RFHHF G CSCGD+W
Sbjct: 776 MKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 25/338 (7%)
Query: 42 NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
N + L+N+ V + D F+ + KD W ++S +V+ + L M
Sbjct: 180 NAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMR 239
Query: 98 EK----NSVSWSAMISGYIECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGKVD 149
N+ ++ + I G D A ++ K V ++ Y + G +
Sbjct: 240 MAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMS 299
Query: 150 LAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 209
A K+F+EMP ++V W+ MIA + +N + + + L M + PN +LSS+L GC+
Sbjct: 300 DAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
Query: 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 269
LG+Q+H LV K D LI +Y KC ++ A KLF E+ K+ V+WN
Sbjct: 360 IGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNT 419
Query: 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329
+I GY G+G KA +F + + +TF + L AC +DLG+Q +
Sbjct: 420 VIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQV-------H 472
Query: 330 GIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKM 361
G+A K ++ ++D+ + G + A + +M
Sbjct: 473 GLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM 510
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 170/390 (43%), Gaps = 40/390 (10%)
Query: 15 GFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA---FDFFQRLPIKDTA 71
GF+ + L D + IP D +Y ML + +D + A D ++ D
Sbjct: 27 GFSVKTAAL-DLESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLF 85
Query: 72 SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI-------------ECGQLD 118
+ N +++ +V+ A +LF MPE+N+VS+ + GY E +L+
Sbjct: 86 ATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELN 145
Query: 119 KAV-----ELFKVAPVKSVVAW-----------------TAMISGYMKFGKVDLAEKLFD 156
V +LF + W A+I+ Y G VD A +F+
Sbjct: 146 PHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFE 205
Query: 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216
+ K++V W +++ YVEN + ED LKLL M G PN + + L L +
Sbjct: 206 GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDF 265
Query: 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 276
K VH + K+ D L+ +Y + GD+ DA K+F E+ + DVV W+ MI+ + Q
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325
Query: 277 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336
+G +A+ LF +M++ + P+ T ++L C LG Q +V G
Sbjct: 326 NGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQ-LHGLVVKVGFDLDIY 384
Query: 337 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 366
++D+ + K+ AV L ++ K +
Sbjct: 385 VSNALIDVYAKCEKMDTAVKLFAELSSKNE 414
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 111/295 (37%), Gaps = 74/295 (25%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDV 55
++ K V+WN+V+ G+ + G+ A +F +++ +V + + +C L S D+
Sbjct: 409 LSSKNEVSWNTVIVGY-ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDL 467
Query: 56 VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
+ G K N AK K +VS +++I Y +CG
Sbjct: 468 ------------------GVQVHGLAIKTNNAK----------KVAVS-NSLIDMYAKCG 498
Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE 175
+ A +F V +W A+ISGY G
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHG----------------------------- 529
Query: 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCK 231
L++L +M +PN + VL GCS+ + G++ + + + P +
Sbjct: 530 --LGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLE 587
Query: 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALR 285
T + L+ + G L+ A KL I + V+ W AM+S E A R
Sbjct: 588 HYTCMVRLLG---RSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARR 639
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 51/257 (19%)
Query: 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 277
K +H + K C D A L++ Y K G +DA LF E+ ++ V++ + GYA
Sbjct: 69 KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA-- 126
Query: 278 GKGEKALRLFDKMKDEG--MKPDSIT-FVALLLACN--------HAGLVDLGIQYFDS-- 324
+ + L+ ++ EG + P T F+ L ++ + H+ +V LG +DS
Sbjct: 127 --CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLG---YDSNA 181
Query: 325 -----MVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKM--- 361
++N Y + D + +V G +++ L+ M
Sbjct: 182 FVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMA 241
Query: 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL----FNLNPANAAGCYVQLANIYAAMKK 417
F P F T L A D A+ + + L+P G L +Y +
Sbjct: 242 GFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG----LLQLYTQLGD 297
Query: 418 WDDVARIRLSMKENNVV 434
D ++ M +N+VV
Sbjct: 298 MSDAFKVFNEMPKNDVV 314
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/474 (42%), Positives = 286/474 (60%), Gaps = 2/474 (0%)
Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159
+ V S+++ Y +CG L+ A +F VK+ ++WTAM+SGY K G+ + A +LF +P
Sbjct: 139 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 198
Query: 160 TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGK 218
KNL +W A+I+G+V++ + + M + + LSS++ C++L++ G+
Sbjct: 199 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 258
Query: 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 278
QVH LV LI MY KC D+ A +F ++ +DVV+W ++I G AQHG
Sbjct: 259 QVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHG 318
Query: 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 338
+ EKAL L+D M G+KP+ +TFV L+ AC+H G V+ G + F SM DYGI HY
Sbjct: 319 QAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHY 378
Query: 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398
TC++DLLGR+G L EA +LI MPF P + LLSAC+ R + A +L +
Sbjct: 379 TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFK 438
Query: 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 458
Y+ L+NIYA+ W V+ R + E V K PG+S +EV F +G+ H
Sbjct: 439 LKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSH 498
Query: 459 PELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 517
P I LK+LE+ M++ GYVPD + LH + E+ KE+LL +HSE+ A+A+GL+K
Sbjct: 499 PLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAV 558
Query: 518 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
GTPIR+ KNLRVCGDCH K+IS I +REIIVRD TR+HHFK G CSC D+W
Sbjct: 559 PGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 136/301 (45%), Gaps = 47/301 (15%)
Query: 47 CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
C LLNS V F + +K+T SW M+SG+ + +A +LF +P KN SW+A
Sbjct: 153 CGLLNSAKAV-----FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTA 207
Query: 107 MISGYIECGQLDKAVELFK---------VAPV---------------------------- 129
+ISG+++ G+ +A +F + P+
Sbjct: 208 LISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIAL 267
Query: 130 ---KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186
V A+I Y K V A+ +F M +++V+W ++I G ++ AE L L
Sbjct: 268 GFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALY 327
Query: 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCK 245
M+ G++PN + ++ CSH+ ++ G+++ Q + K + + T L+ + +
Sbjct: 328 DDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGR 387
Query: 246 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304
G L++A L + D TW A++S + G+G+ +R+ D + D T++
Sbjct: 388 SGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYIL 447
Query: 305 L 305
L
Sbjct: 448 L 448
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 1/167 (0%)
Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181
+ K+ V+ +++ Y K G A ++FDEMP ++ + W +++ + + +
Sbjct: 28 HIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGK 87
Query: 182 GLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240
L + + +RP+ S+++ C++L S+ G+QVH S D + L+
Sbjct: 88 TLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLV 147
Query: 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 287
MY KCG L A +F I+ K+ ++W AM+SGYA+ G+ E+AL LF
Sbjct: 148 DMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 151/369 (40%), Gaps = 79/369 (21%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
+ VK T++W ++++G+AK G+ ++A ELF +P ++ S+ ++S + S + AF
Sbjct: 166 IRVKNTISWTAMVSGYAKS-GRKEEALELFRILPVKNLYSWTALISG-FVQSGKGLEAFS 223
Query: 61 FF-----QRLPIKD--------------TASW---------------------NTMISGF 80
F +R+ I D AS N +I +
Sbjct: 224 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMY 283
Query: 81 VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWT 136
+ ++ A+D+F M ++ VSW+++I G + GQ +KA+ L+ V V +
Sbjct: 284 AKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFV 343
Query: 137 AMISGYMKFGKVDLAEKLFDEMPTK-----NLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
+I G V+ +LF M +L + ++ + ++ L+ M
Sbjct: 344 GLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM-- 401
Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC------- 244
P+ + +++L C Q+G ++ + S KD + L ++Y
Sbjct: 402 -PFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGK 460
Query: 245 ------KCGDLE---DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-- 293
K G++E D +E++++ V + +G H E RL K+++E
Sbjct: 461 VSEARRKLGEMEVRKDPGHSSVEVRKETEVFY----AGETSHPLKEDIFRLLKKLEEEMR 516
Query: 294 ---GMKPDS 299
G PD+
Sbjct: 517 IRNGYVPDT 525
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 267
C+ +L K +H + K + + L+++Y KCG A ++F E+ +D + W
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72
Query: 268 NAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSM 325
++++ Q K L G++PD F AL+ AC + G +D G Q + +
Sbjct: 73 ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132
Query: 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354
V++Y A + +VD+ + G L A
Sbjct: 133 VSEY--ANDEVVKSSLVDMYAKCGLLNSA 159
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 291/471 (61%), Gaps = 5/471 (1%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164
+ MI Y++C +D A ++F P + V++WT +I+ Y + G ++ A +LF+ +PTK++V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247
Query: 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 224
W AM+ G+ +N+ ++ L+ M GIR + +++ + C+ L + + + Q+
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307
Query: 225 FKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282
KS + + LI MY KCG++E+A +F+ + K+V T+++MI G A HG+ ++
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367
Query: 283 ALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341
AL LF M + +KP+++TFV L+AC+H+GLVD G Q FDSM +G+ DHYTCM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427
Query: 342 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401
VDLLGR G+L EA++LIK M +P ++G LL ACR+H ++AE AA +LF L P +
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP-DI 486
Query: 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-IEVGTVVHEFRSGDRVHPE 460
G Y+ L+N+YA+ W V R+R +KE + K P SW ++ +H+F G+ HP
Sbjct: 487 IGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPM 546
Query: 461 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 520
I +KL+EL +R+ + GY PDL + V + K +L+ H+EKLA+AF L+ +
Sbjct: 547 SNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDS 606
Query: 521 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 571
I + KNLR+C DCH+ + S + + II+RD RFHHF+ G CSCGD+W
Sbjct: 607 TITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 52/305 (17%)
Query: 105 SAMISGYIECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFG-KVD-LAEKLFDEM 158
S++IS +C L++ ++ + +S T +I K G +D A ++ + +
Sbjct: 50 SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109
Query: 159 PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218
+N W A+I GY ++ + + M I P + + S++L C + L LG+
Sbjct: 110 QFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGR 169
Query: 219 QVHQLVFK-SPLC------------------------------KDTTALTPLISMYCKCG 247
Q H F+ C +D + T LI+ Y + G
Sbjct: 170 QFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVG 229
Query: 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307
++E A +LF + KD+V W AM++G+AQ+ K ++AL FD+M+ G++ D +T +
Sbjct: 230 NMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 289
Query: 308 ACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHY---TCMVDLLGRAGKLVEAVDLIK 359
AC G +Y D V IA K DH + ++D+ + G + EAV++
Sbjct: 290 ACAQLG----ASKYADRAVQ---IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFM 342
Query: 360 KMPFK 364
M K
Sbjct: 343 SMNNK 347
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/440 (44%), Positives = 277/440 (62%), Gaps = 2/440 (0%)
Query: 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191
V ++++ Y K G++ A K+FDEMP +N+VTW+ M+ GY + E+ L L + +
Sbjct: 151 VFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALF 210
Query: 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251
+ N S SSV+ C++ + L+LG+Q+H L KS + + L+S+Y KCG E
Sbjct: 211 ENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEG 270
Query: 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311
A ++F E+ K++ WNAM+ YAQH +K + LF +MK GMKP+ ITF+ +L AC+H
Sbjct: 271 AYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSH 330
Query: 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371
AGLVD G YFD M + I HY +VD+LGRAG+L EA+++I MP P +++G
Sbjct: 331 AGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWG 389
Query: 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431
LL++C VHK +LA FAA +F L P ++G ++ L+N YAA +++D A+ R +++
Sbjct: 390 ALLTSCTVHKNTELAAFAADKVFELGPV-SSGMHISLSNAYAADGRFEDAAKARKLLRDR 448
Query: 432 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 491
K G SW+E VH F +G+R H + I+EKL EL + M+ AGY+ D + L V
Sbjct: 449 GEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREV 508
Query: 492 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 551
+ K Q + +HSE+LAIAFGLI P PIRV KNLRVCGDCH A K++S +R IIV
Sbjct: 509 DGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIV 568
Query: 552 RDTTRFHHFKDGTCSCGDYW 571
RD RFH F+DG CSC DYW
Sbjct: 569 RDNNRFHRFEDGKCSCNDYW 588
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 99/170 (58%)
Query: 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210
+ + F++ P K+ TW+++I+ + +N L+ L+ M+ +RP+ L S C+
Sbjct: 69 SRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAI 128
Query: 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270
LS +G+ VH L K+ D + L+ MY KCG++ A K+F E+ +++VVTW+ M
Sbjct: 129 LSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGM 188
Query: 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320
+ GYAQ G+ E+AL LF + E + + +F +++ C ++ L++LG Q
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ 238
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 125/284 (44%), Gaps = 43/284 (15%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTM 76
G++ A+++FD++PQ +VV+++ M+ ++ A + F F+ L + D S++++
Sbjct: 165 GEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDY-SFSSV 223
Query: 77 ISGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
IS + R + + + +S S+++S Y +CG + A ++F PVK++
Sbjct: 224 ISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNL 283
Query: 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192
W AM+ Y ++S + ++L + M
Sbjct: 284 GIWNAMLK-------------------------------AYAQHSHTQKVIELFKRMKLS 312
Query: 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252
G++PN + +VL CSH + G+ + +S + L+ M + G L++A
Sbjct: 313 GMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEA 372
Query: 253 CKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294
++ + I + V W A+++ H E A DK+ + G
Sbjct: 373 LEVITNMPIDPTESV-WGALLTSCTVHKNTELAAFAADKVFELG 415
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,916,639
Number of Sequences: 539616
Number of extensions: 8697476
Number of successful extensions: 29463
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 20298
Number of HSP's gapped (non-prelim): 2404
length of query: 571
length of database: 191,569,459
effective HSP length: 123
effective length of query: 448
effective length of database: 125,196,691
effective search space: 56088117568
effective search space used: 56088117568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)