Query 008280
Match_columns 571
No_of_seqs 750 out of 4554
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 21:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2E-114 5E-119 929.7 62.1 566 3-571 120-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-111 7E-116 926.7 63.1 561 3-569 219-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-66 2.5E-71 573.4 49.1 536 3-566 118-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.3E-59 5E-64 506.3 50.4 432 1-438 432-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-59 3.6E-64 507.3 49.0 514 3-549 367-911 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3E-56 6.4E-61 479.6 43.6 475 68-564 85-581 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-27 2.8E-32 268.4 47.0 418 6-433 431-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-27 6.9E-32 265.3 46.6 419 3-431 394-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.7E-29 3.8E-34 201.1 7.2 106 438-561 2-116 (116)
10 KOG4626 O-linked N-acetylgluco 99.9 1.9E-21 4E-26 187.8 27.8 358 53-419 130-507 (966)
11 PRK11447 cellulose synthase su 99.9 7.9E-20 1.7E-24 207.0 45.2 409 13-433 276-743 (1157)
12 PRK11447 cellulose synthase su 99.9 1.8E-19 4E-24 204.1 46.3 410 10-430 116-665 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 6.6E-21 1.4E-25 184.0 27.3 356 70-434 116-488 (966)
14 PRK11788 tetratricopeptide rep 99.9 3.7E-20 7.9E-25 187.1 30.9 292 141-439 44-355 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-19 1.6E-23 187.1 41.1 251 176-431 307-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 5.7E-19 1.2E-23 178.4 32.1 279 79-395 44-346 (389)
17 PRK15174 Vi polysaccharide exp 99.8 8.2E-18 1.8E-22 178.6 38.0 345 53-402 19-387 (656)
18 PRK10049 pgaA outer membrane p 99.8 1.8E-17 3.9E-22 179.8 41.3 374 53-431 29-456 (765)
19 PRK10049 pgaA outer membrane p 99.8 7.5E-17 1.6E-21 174.9 43.9 388 9-402 18-462 (765)
20 PRK15174 Vi polysaccharide exp 99.8 1.7E-17 3.6E-22 176.3 37.9 347 80-433 15-383 (656)
21 PRK09782 bacteriophage N4 rece 99.8 4.5E-16 9.7E-21 169.2 46.7 418 4-432 179-707 (987)
22 PRK14574 hmsH outer membrane p 99.8 2.2E-15 4.8E-20 160.5 43.3 414 16-433 44-515 (822)
23 PRK09782 bacteriophage N4 rece 99.8 6.4E-15 1.4E-19 160.2 45.6 323 102-434 377-743 (987)
24 TIGR00990 3a0801s09 mitochondr 99.8 8.5E-16 1.8E-20 163.7 36.7 352 73-432 130-538 (615)
25 PRK14574 hmsH outer membrane p 99.8 2E-14 4.3E-19 153.4 40.3 380 48-431 44-479 (822)
26 KOG2002 TPR-containing nuclear 99.7 9.9E-15 2.1E-19 149.1 32.3 427 2-433 266-747 (1018)
27 KOG2003 TPR repeat-containing 99.7 2.6E-15 5.6E-20 140.6 24.1 204 210-418 502-710 (840)
28 KOG2002 TPR-containing nuclear 99.7 8E-14 1.7E-18 142.6 33.6 412 14-433 207-677 (1018)
29 PF13429 TPR_15: Tetratricopep 99.6 1.2E-15 2.5E-20 146.3 10.8 256 168-429 13-275 (280)
30 KOG0495 HAT repeat protein [RN 99.6 1E-11 2.2E-16 121.9 37.0 421 12-445 412-892 (913)
31 KOG2076 RNA polymerase III tra 99.6 2.6E-12 5.5E-17 130.9 31.0 348 83-441 152-522 (895)
32 PRK10747 putative protoheme IX 99.6 2.9E-12 6.3E-17 128.5 28.8 274 145-429 97-388 (398)
33 KOG1155 Anaphase-promoting com 99.6 4.8E-11 1E-15 113.0 33.2 327 99-430 162-494 (559)
34 KOG0547 Translocase of outer m 99.5 2.6E-11 5.6E-16 115.5 30.8 213 210-429 338-564 (606)
35 KOG4422 Uncharacterized conser 99.5 2E-10 4.3E-15 107.7 36.2 410 5-434 115-593 (625)
36 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 109.6 35.0 353 68-429 162-534 (559)
37 PRK10747 putative protoheme IX 99.5 7.1E-12 1.5E-16 125.8 28.3 281 83-397 97-391 (398)
38 KOG1915 Cell cycle control pro 99.5 6.5E-11 1.4E-15 112.3 32.1 382 53-441 87-510 (677)
39 KOG2003 TPR repeat-containing 99.5 4E-12 8.6E-17 119.5 23.8 255 172-431 428-689 (840)
40 KOG1126 DNA-binding cell divis 99.5 2.1E-12 4.6E-17 127.6 22.8 276 146-432 333-621 (638)
41 KOG1173 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 111.9 33.9 402 22-430 31-517 (611)
42 TIGR00540 hemY_coli hemY prote 99.5 6.5E-11 1.4E-15 119.5 32.2 129 263-393 262-396 (409)
43 PF13429 TPR_15: Tetratricopep 99.5 1.7E-13 3.7E-18 131.3 12.7 250 75-327 13-276 (280)
44 TIGR00540 hemY_coli hemY prote 99.5 3.9E-11 8.5E-16 121.1 29.2 278 144-429 96-397 (409)
45 KOG0495 HAT repeat protein [RN 99.5 5.2E-10 1.1E-14 110.2 34.2 388 37-442 379-791 (913)
46 KOG1915 Cell cycle control pro 99.5 1.5E-09 3.3E-14 103.2 35.9 415 19-444 86-546 (677)
47 KOG2076 RNA polymerase III tra 99.5 1.1E-09 2.3E-14 112.2 36.0 334 19-356 152-547 (895)
48 KOG1126 DNA-binding cell divis 99.4 9.1E-12 2E-16 123.2 20.5 192 163-360 421-616 (638)
49 COG2956 Predicted N-acetylgluc 99.4 1.7E-10 3.7E-15 104.5 26.3 278 83-395 48-346 (389)
50 COG2956 Predicted N-acetylgluc 99.4 3.6E-10 7.8E-15 102.5 25.9 297 114-443 48-359 (389)
51 KOG4422 Uncharacterized conser 99.4 9.9E-10 2.1E-14 103.1 29.5 335 53-397 193-591 (625)
52 TIGR02521 type_IV_pilW type IV 99.4 1E-10 2.3E-15 108.7 23.2 197 232-430 30-231 (234)
53 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.6E-14 102.2 26.9 274 145-429 97-388 (400)
54 COG3071 HemY Uncharacterized e 99.3 1.1E-08 2.4E-13 95.9 30.2 279 83-395 97-389 (400)
55 KOG2376 Signal recognition par 99.3 2.4E-08 5.3E-13 97.9 33.5 408 12-428 18-517 (652)
56 PRK12370 invasion protein regu 99.3 2.2E-09 4.7E-14 112.7 28.3 258 161-432 254-536 (553)
57 KOG2047 mRNA splicing factor [ 99.3 1.2E-07 2.6E-12 93.9 36.9 418 7-430 103-614 (835)
58 KOG1173 Anaphase-promoting com 99.3 1.1E-08 2.3E-13 99.8 29.2 269 103-375 246-530 (611)
59 KOG1174 Anaphase-promoting com 99.3 1.1E-07 2.3E-12 89.4 33.2 292 105-402 198-506 (564)
60 PF13041 PPR_2: PPR repeat fam 99.3 2.1E-11 4.5E-16 82.3 6.7 50 161-210 1-50 (50)
61 TIGR02521 type_IV_pilW type IV 99.2 4.6E-09 1E-13 97.5 23.9 160 164-326 32-196 (234)
62 KOG1840 Kinesin light chain [C 99.2 1.8E-09 3.8E-14 108.3 21.8 230 199-429 200-477 (508)
63 PF13041 PPR_2: PPR repeat fam 99.2 3.3E-11 7.2E-16 81.3 6.6 50 262-311 1-50 (50)
64 KOG2047 mRNA splicing factor [ 99.2 1.4E-07 3E-12 93.4 33.7 154 276-431 523-687 (835)
65 KOG4318 Bicoid mRNA stability 99.2 9.9E-10 2.1E-14 111.9 18.9 263 184-487 11-274 (1088)
66 PRK12370 invasion protein regu 99.2 3.6E-09 7.7E-14 111.1 24.2 242 146-398 275-537 (553)
67 KOG1174 Anaphase-promoting com 99.2 2.2E-07 4.8E-12 87.3 32.4 262 161-430 230-499 (564)
68 KOG4318 Bicoid mRNA stability 99.2 7.5E-08 1.6E-12 98.6 31.4 99 336-435 492-598 (1088)
69 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.5E-14 99.2 15.3 231 167-433 227-460 (478)
70 KOG0547 Translocase of outer m 99.2 2.3E-07 5E-12 89.1 31.2 378 10-397 119-567 (606)
71 PRK11189 lipoprotein NlpI; Pro 99.2 7.9E-09 1.7E-13 99.3 22.2 212 212-433 40-267 (296)
72 KOG3785 Uncharacterized conser 99.2 7.4E-07 1.6E-11 82.2 32.9 379 47-435 66-494 (557)
73 KOG4162 Predicted calmodulin-b 99.1 1.3E-07 2.9E-12 95.7 29.9 127 302-431 653-783 (799)
74 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.6E-13 101.3 22.1 231 165-395 201-478 (508)
75 KOG1129 TPR repeat-containing 99.1 4.3E-09 9.4E-14 95.5 16.1 191 237-432 227-425 (478)
76 PRK11189 lipoprotein NlpI; Pro 99.1 5.6E-08 1.2E-12 93.5 23.9 227 177-411 40-280 (296)
77 COG3063 PilF Tfp pilus assembl 99.0 3.6E-08 7.9E-13 85.7 17.9 164 266-433 37-204 (250)
78 KOG4162 Predicted calmodulin-b 99.0 8.5E-07 1.9E-11 90.0 29.8 391 4-402 321-789 (799)
79 KOG3616 Selective LIM binding 99.0 3.9E-07 8.4E-12 91.4 26.9 216 172-426 715-932 (1636)
80 KOG0624 dsRNA-activated protei 99.0 5.4E-07 1.2E-11 82.8 25.3 191 205-401 162-375 (504)
81 KOG1125 TPR repeat-containing 99.0 1.5E-08 3.4E-13 99.2 15.1 216 208-430 295-526 (579)
82 KOG3785 Uncharacterized conser 98.9 1.7E-05 3.8E-10 73.4 32.3 375 12-401 63-495 (557)
83 PF12569 NARP1: NMDA receptor- 98.9 2.6E-06 5.6E-11 86.8 29.4 278 109-395 12-333 (517)
84 COG3063 PilF Tfp pilus assembl 98.9 8.5E-07 1.8E-11 77.4 21.6 188 165-357 37-229 (250)
85 cd05804 StaR_like StaR_like; a 98.9 4.2E-06 9.1E-11 83.4 30.2 296 133-432 7-337 (355)
86 PF12569 NARP1: NMDA receptor- 98.9 3.4E-06 7.3E-11 86.0 29.4 285 139-430 11-333 (517)
87 PF04733 Coatomer_E: Coatomer 98.9 7E-08 1.5E-12 91.4 16.2 80 350-430 182-264 (290)
88 PF04733 Coatomer_E: Coatomer 98.9 1.5E-07 3.2E-12 89.3 17.2 246 144-401 13-270 (290)
89 KOG1156 N-terminal acetyltrans 98.9 2.1E-05 4.4E-10 78.7 32.2 421 2-432 4-469 (700)
90 KOG0985 Vesicle coat protein c 98.8 2E-05 4.4E-10 82.3 32.9 153 263-437 1103-1255(1666)
91 KOG3617 WD40 and TPR repeat-co 98.8 6E-06 1.3E-10 84.3 28.4 355 34-425 722-1168(1416)
92 KOG3616 Selective LIM binding 98.8 4.7E-06 1E-10 83.9 27.1 375 11-432 594-1025(1636)
93 KOG4340 Uncharacterized conser 98.8 6.1E-06 1.3E-10 74.6 24.7 402 10-430 14-442 (459)
94 KOG1156 N-terminal acetyltrans 98.8 1.8E-05 4E-10 79.1 30.1 385 39-433 9-436 (700)
95 PRK04841 transcriptional regul 98.8 1.2E-05 2.7E-10 90.7 33.7 354 78-432 349-761 (903)
96 KOG2376 Signal recognition par 98.8 3E-05 6.6E-10 76.7 30.3 338 77-426 19-400 (652)
97 KOG1127 TPR repeat-containing 98.7 7.2E-06 1.6E-10 85.5 26.3 412 8-429 494-994 (1238)
98 KOG1070 rRNA processing protei 98.7 1.2E-06 2.5E-11 94.2 21.0 200 230-434 1455-1666(1710)
99 cd05804 StaR_like StaR_like; a 98.7 1.8E-05 3.8E-10 78.9 28.9 57 340-396 269-336 (355)
100 KOG0548 Molecular co-chaperone 98.7 1.3E-05 2.7E-10 78.6 26.2 382 15-413 11-471 (539)
101 KOG0624 dsRNA-activated protei 98.7 7.1E-06 1.5E-10 75.6 22.7 280 77-361 45-367 (504)
102 KOG4340 Uncharacterized conser 98.7 4.4E-06 9.5E-11 75.5 20.8 302 104-427 13-335 (459)
103 PRK04841 transcriptional regul 98.7 6.9E-05 1.5E-09 84.7 34.9 345 53-399 355-763 (903)
104 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.8E-11 78.4 19.6 181 232-431 32-232 (235)
105 KOG0548 Molecular co-chaperone 98.6 1.8E-05 3.9E-10 77.5 24.1 365 48-432 12-456 (539)
106 KOG3617 WD40 and TPR repeat-co 98.6 5.3E-05 1.2E-09 77.6 27.9 341 6-385 757-1189(1416)
107 KOG0985 Vesicle coat protein c 98.6 0.00013 2.7E-09 76.6 31.1 288 109-423 1056-1375(1666)
108 PRK10370 formate-dependent nit 98.6 2.7E-06 5.8E-11 76.2 16.8 119 312-433 52-175 (198)
109 KOG1127 TPR repeat-containing 98.6 2.4E-05 5.2E-10 81.8 25.4 421 3-429 523-1102(1238)
110 KOG1914 mRNA cleavage and poly 98.6 0.00037 8.1E-09 68.5 30.4 208 179-390 309-533 (656)
111 PLN02789 farnesyltranstransfer 98.6 3.4E-05 7.4E-10 74.2 23.5 163 249-415 88-268 (320)
112 PRK15359 type III secretion sy 98.5 2.5E-06 5.5E-11 72.2 13.9 122 285-413 14-137 (144)
113 KOG1125 TPR repeat-containing 98.5 4.1E-06 8.8E-11 82.6 17.0 247 171-421 293-561 (579)
114 PRK15359 type III secretion sy 98.5 4E-06 8.6E-11 71.0 14.1 96 337-433 26-123 (144)
115 PF12854 PPR_1: PPR repeat 98.4 2.9E-07 6.3E-12 55.7 4.0 33 228-260 2-34 (34)
116 KOG1914 mRNA cleavage and poly 98.4 0.001 2.2E-08 65.6 29.9 388 36-428 18-536 (656)
117 COG5010 TadD Flp pilus assembl 98.4 8.4E-06 1.8E-10 72.8 14.5 127 303-432 70-198 (257)
118 PRK15363 pathogenicity island 98.4 7E-06 1.5E-10 68.4 13.1 118 335-476 35-154 (157)
119 KOG1070 rRNA processing protei 98.4 4E-05 8.6E-10 82.9 21.7 214 101-315 1458-1687(1710)
120 PRK15179 Vi polysaccharide bio 98.4 2.9E-05 6.2E-10 82.4 20.9 140 263-407 85-227 (694)
121 PLN02789 farnesyltranstransfer 98.4 0.00017 3.7E-09 69.5 24.4 208 166-379 40-267 (320)
122 PRK10370 formate-dependent nit 98.4 3.5E-05 7.7E-10 69.0 18.3 152 240-402 23-179 (198)
123 TIGR03302 OM_YfiO outer membra 98.4 4.5E-05 9.8E-10 71.0 19.4 57 305-361 172-229 (235)
124 COG4783 Putative Zn-dependent 98.4 0.00016 3.5E-09 70.4 22.4 177 248-430 252-436 (484)
125 PF12854 PPR_1: PPR repeat 98.4 7.9E-07 1.7E-11 53.7 4.4 32 330-361 2-33 (34)
126 KOG1128 Uncharacterized conser 98.4 2.6E-05 5.6E-10 79.1 17.5 192 229-430 394-615 (777)
127 PRK14720 transcript cleavage f 98.4 0.00012 2.5E-09 78.7 23.4 166 100-293 30-198 (906)
128 PRK15179 Vi polysaccharide bio 98.3 0.00014 2.9E-09 77.4 22.5 142 229-374 82-229 (694)
129 COG5010 TadD Flp pilus assembl 98.3 0.00015 3.2E-09 65.1 18.8 155 268-426 70-226 (257)
130 KOG1128 Uncharacterized conser 98.3 3.3E-05 7.2E-10 78.4 15.9 155 267-434 401-585 (777)
131 TIGR02552 LcrH_SycD type III s 98.3 1.4E-05 2.9E-10 67.2 11.6 97 335-432 17-115 (135)
132 COG4783 Putative Zn-dependent 98.2 0.00047 1E-08 67.3 22.2 147 263-432 305-455 (484)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.1E-05 1.8E-09 73.1 16.2 128 235-365 171-298 (395)
134 PRK14720 transcript cleavage f 98.2 0.0013 2.9E-08 70.8 26.2 234 68-346 29-268 (906)
135 KOG3081 Vesicle coat complex C 98.2 0.0017 3.7E-08 58.4 22.5 69 351-420 189-259 (299)
136 KOG3081 Vesicle coat complex C 98.1 0.0012 2.7E-08 59.3 21.3 154 241-401 116-276 (299)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5E-05 1.1E-09 74.6 14.1 122 302-429 172-295 (395)
138 TIGR02552 LcrH_SycD type III s 98.1 9.5E-05 2.1E-09 62.0 14.2 113 286-402 5-120 (135)
139 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.8E-11 51.2 4.3 35 164-198 1-35 (35)
140 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 50.7 4.6 34 265-298 1-34 (35)
141 KOG3060 Uncharacterized conser 98.1 0.0014 3E-08 58.6 20.2 186 212-400 26-224 (289)
142 KOG3060 Uncharacterized conser 98.1 0.00084 1.8E-08 59.9 18.7 159 269-432 57-221 (289)
143 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 48.8 4.3 33 164-196 2-34 (34)
144 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.5E-10 48.3 4.5 33 265-297 2-34 (34)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00035 7.6E-09 59.3 14.1 85 341-427 54-143 (145)
146 KOG2053 Mitochondrial inherita 97.9 0.041 8.9E-07 58.0 35.1 399 22-436 24-507 (932)
147 KOG2041 WD40 repeat protein [G 97.9 0.02 4.4E-07 58.4 27.3 180 23-222 679-902 (1189)
148 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.6E-09 56.4 10.0 92 338-430 3-96 (100)
149 PF09976 TPR_21: Tetratricopep 97.9 0.00093 2E-08 56.7 15.8 125 267-393 15-144 (145)
150 PF12895 Apc3: Anaphase-promot 97.9 1.4E-05 3E-10 60.7 3.8 77 349-427 3-83 (84)
151 PF13414 TPR_11: TPR repeat; P 97.8 3.6E-05 7.7E-10 55.9 5.2 64 366-430 2-66 (69)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00028 6.1E-09 57.5 11.3 92 339-431 6-105 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00045 9.8E-09 56.2 12.1 102 301-402 4-111 (119)
154 KOG0550 Molecular chaperone (D 97.8 0.00085 1.8E-08 64.0 14.7 269 137-432 54-351 (486)
155 PLN03088 SGT1, suppressor of 97.8 0.00038 8.3E-09 68.7 13.0 95 306-402 9-105 (356)
156 PF13432 TPR_16: Tetratricopep 97.8 6.6E-05 1.4E-09 53.7 5.5 59 373-432 3-61 (65)
157 KOG2041 WD40 repeat protein [G 97.7 0.07 1.5E-06 54.6 30.3 187 53-262 677-881 (1189)
158 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 45.0 3.5 31 265-295 1-31 (31)
159 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.4E-10 45.2 3.2 31 164-194 1-31 (31)
160 cd00189 TPR Tetratricopeptide 97.7 0.00071 1.5E-08 52.0 10.8 89 267-358 3-91 (100)
161 PRK02603 photosystem I assembl 97.6 0.00062 1.3E-08 59.7 10.9 82 335-417 35-121 (172)
162 PRK15331 chaperone protein Sic 97.6 0.0015 3.3E-08 54.9 12.3 89 341-430 43-133 (165)
163 KOG0553 TPR repeat-containing 97.6 0.00066 1.4E-08 62.2 11.0 100 309-411 91-192 (304)
164 PRK10153 DNA-binding transcrip 97.6 0.0039 8.5E-08 64.4 17.9 61 368-430 421-481 (517)
165 PLN03088 SGT1, suppressor of 97.6 0.0012 2.5E-08 65.3 13.5 103 269-374 7-110 (356)
166 CHL00033 ycf3 photosystem I as 97.6 0.00063 1.4E-08 59.4 10.5 94 334-428 34-139 (168)
167 COG3898 Uncharacterized membra 97.6 0.085 1.8E-06 50.5 27.0 271 145-430 97-391 (531)
168 COG4235 Cytochrome c biogenesi 97.5 0.0019 4.1E-08 59.7 13.1 105 331-436 152-261 (287)
169 PF14938 SNAP: Soluble NSF att 97.5 0.057 1.2E-06 51.6 23.1 97 266-362 157-264 (282)
170 CHL00033 ycf3 photosystem I as 97.5 0.006 1.3E-07 53.2 15.1 81 264-346 35-117 (168)
171 PF12895 Apc3: Anaphase-promot 97.5 0.00043 9.4E-09 52.4 6.7 80 277-360 2-83 (84)
172 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.6E-06 49.9 30.2 121 236-376 180-300 (319)
173 PF14938 SNAP: Soluble NSF att 97.5 0.0085 1.9E-07 57.2 17.1 168 166-361 38-222 (282)
174 PF13432 TPR_16: Tetratricopep 97.4 0.00032 6.9E-09 50.1 5.5 61 341-401 3-65 (65)
175 PF04840 Vps16_C: Vps16, C-ter 97.4 0.066 1.4E-06 51.6 22.6 108 165-288 179-286 (319)
176 PF05843 Suf: Suppressor of fo 97.4 0.0033 7.1E-08 59.8 13.8 143 265-412 2-150 (280)
177 KOG0553 TPR repeat-containing 97.4 0.00096 2.1E-08 61.2 9.4 87 343-430 89-177 (304)
178 PF14559 TPR_19: Tetratricopep 97.4 0.00015 3.4E-09 52.3 3.6 52 378-430 2-53 (68)
179 KOG1130 Predicted G-alpha GTPa 97.4 0.0012 2.7E-08 62.7 9.9 256 172-429 26-342 (639)
180 PF13371 TPR_9: Tetratricopept 97.4 0.00059 1.3E-08 50.0 6.1 59 374-433 2-60 (73)
181 COG4700 Uncharacterized protei 97.3 0.035 7.7E-07 47.3 16.8 133 295-430 85-221 (251)
182 PRK15363 pathogenicity island 97.3 0.0057 1.2E-07 51.3 12.0 93 165-259 37-129 (157)
183 PRK02603 photosystem I assembl 97.3 0.0069 1.5E-07 53.1 13.1 89 164-253 36-126 (172)
184 PF12688 TPR_5: Tetratrico pep 97.2 0.0089 1.9E-07 48.2 12.0 106 168-274 6-116 (120)
185 PRK10153 DNA-binding transcrip 97.2 0.018 3.8E-07 59.6 16.7 140 261-402 334-488 (517)
186 PF12688 TPR_5: Tetratrico pep 97.2 0.0053 1.2E-07 49.5 10.2 87 341-428 7-101 (120)
187 PF05843 Suf: Suppressor of fo 97.2 0.0064 1.4E-07 57.9 12.3 130 300-431 2-136 (280)
188 PF14559 TPR_19: Tetratricopep 97.1 0.00065 1.4E-08 48.9 4.3 49 311-361 3-51 (68)
189 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.31 6.7E-06 47.6 27.9 137 262-401 395-536 (660)
190 KOG2796 Uncharacterized conser 97.1 0.17 3.6E-06 45.9 19.5 163 132-294 136-316 (366)
191 PF10037 MRP-S27: Mitochondria 97.1 0.015 3.2E-07 57.8 14.5 120 193-312 61-186 (429)
192 PF13414 TPR_11: TPR repeat; P 97.1 0.0013 2.8E-08 47.5 5.4 65 334-398 2-69 (69)
193 KOG1538 Uncharacterized conser 97.1 0.12 2.7E-06 52.5 20.4 97 239-367 709-806 (1081)
194 PRK10866 outer membrane biogen 97.1 0.1 2.2E-06 48.4 19.1 55 305-359 181-236 (243)
195 PF13431 TPR_17: Tetratricopep 97.0 0.00035 7.7E-09 42.1 1.6 33 390-423 2-34 (34)
196 KOG2280 Vacuolar assembly/sort 97.0 0.55 1.2E-05 49.0 25.9 75 243-323 694-768 (829)
197 PRK10803 tol-pal system protei 97.0 0.0048 1E-07 57.7 9.8 94 337-431 145-246 (263)
198 PF08579 RPM2: Mitochondrial r 97.0 0.017 3.8E-07 44.9 10.8 80 267-347 28-116 (120)
199 PF08579 RPM2: Mitochondrial r 97.0 0.011 2.3E-07 46.1 9.5 81 165-245 27-116 (120)
200 PRK10866 outer membrane biogen 97.0 0.32 6.9E-06 45.2 21.4 54 340-393 180-238 (243)
201 PF13281 DUF4071: Domain of un 96.9 0.11 2.3E-06 50.7 18.4 160 238-400 146-338 (374)
202 PF13428 TPR_14: Tetratricopep 96.9 0.0013 2.9E-08 42.4 3.8 42 368-410 2-43 (44)
203 COG4700 Uncharacterized protei 96.9 0.18 4E-06 43.1 17.2 46 306-354 167-212 (251)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0037 7.9E-08 61.5 8.3 64 367-430 75-140 (453)
205 PF10037 MRP-S27: Mitochondria 96.8 0.019 4E-07 57.1 12.4 119 229-348 62-186 (429)
206 KOG0550 Molecular chaperone (D 96.8 0.25 5.4E-06 47.8 18.7 54 172-228 178-233 (486)
207 KOG2280 Vacuolar assembly/sort 96.7 0.96 2.1E-05 47.3 27.6 321 73-426 440-794 (829)
208 PF07079 DUF1347: Protein of u 96.7 0.7 1.5E-05 45.4 30.6 397 17-428 17-521 (549)
209 PRK10803 tol-pal system protei 96.7 0.033 7.2E-07 52.1 12.6 101 301-401 145-251 (263)
210 PF06239 ECSIT: Evolutionarily 96.6 0.024 5.1E-07 50.0 10.4 97 253-350 34-153 (228)
211 KOG2796 Uncharacterized conser 96.6 0.16 3.5E-06 46.0 15.6 165 236-401 139-320 (366)
212 KOG1130 Predicted G-alpha GTPa 96.6 0.014 3E-07 55.9 9.5 127 200-326 197-342 (639)
213 PF13371 TPR_9: Tetratricopept 96.6 0.0075 1.6E-07 44.0 6.3 61 342-402 2-64 (73)
214 PF06239 ECSIT: Evolutionarily 96.6 0.02 4.4E-07 50.4 9.7 95 152-246 34-151 (228)
215 PF13525 YfiO: Outer membrane 96.5 0.52 1.1E-05 42.4 19.0 50 305-354 147-197 (203)
216 KOG2066 Vacuolar assembly/sort 96.5 1.4 3.1E-05 46.3 25.8 67 302-380 637-703 (846)
217 KOG1258 mRNA processing protei 96.4 1.4 2.9E-05 45.1 26.1 376 36-416 43-489 (577)
218 KOG0543 FKBP-type peptidyl-pro 96.4 0.03 6.5E-07 54.0 10.2 108 343-477 216-340 (397)
219 PF03704 BTAD: Bacterial trans 96.4 0.063 1.4E-06 45.5 11.4 61 368-429 63-123 (146)
220 PF13525 YfiO: Outer membrane 96.3 0.4 8.8E-06 43.2 16.9 167 239-422 11-198 (203)
221 PF13424 TPR_12: Tetratricopep 96.2 0.0068 1.5E-07 44.9 4.2 24 404-427 48-71 (78)
222 COG4235 Cytochrome c biogenesi 96.2 0.27 5.9E-06 45.8 15.2 103 297-401 154-261 (287)
223 PF13512 TPR_18: Tetratricopep 96.2 0.084 1.8E-06 43.6 10.6 73 342-414 17-94 (142)
224 COG3898 Uncharacterized membra 96.1 1.4 3.1E-05 42.5 27.9 280 73-361 85-389 (531)
225 PF13424 TPR_12: Tetratricopep 96.1 0.0078 1.7E-07 44.6 3.9 62 335-396 5-75 (78)
226 PF12921 ATP13: Mitochondrial 95.8 0.14 3E-06 41.8 10.2 51 294-344 47-97 (126)
227 COG0457 NrfG FOG: TPR repeat [ 95.7 1.5 3.3E-05 39.6 26.6 195 233-430 59-264 (291)
228 PF12921 ATP13: Mitochondrial 95.7 0.11 2.5E-06 42.3 9.4 78 299-376 2-97 (126)
229 KOG0543 FKBP-type peptidyl-pro 95.7 0.14 3E-06 49.5 11.2 95 335-430 257-354 (397)
230 COG0457 NrfG FOG: TPR repeat [ 95.7 1.6 3.5E-05 39.4 23.6 199 199-399 60-268 (291)
231 COG1729 Uncharacterized protei 95.6 0.087 1.9E-06 48.3 9.1 89 338-430 145-243 (262)
232 PF09205 DUF1955: Domain of un 95.5 1 2.2E-05 36.4 14.8 140 275-434 13-152 (161)
233 KOG1538 Uncharacterized conser 95.5 2.4 5.1E-05 43.7 19.4 94 334-433 746-848 (1081)
234 KOG4555 TPR repeat-containing 95.5 0.14 3E-06 41.1 8.6 91 343-433 51-146 (175)
235 COG3118 Thioredoxin domain-con 95.4 0.8 1.7E-05 42.6 14.6 122 307-432 142-266 (304)
236 PF03704 BTAD: Bacterial trans 95.3 0.21 4.6E-06 42.2 10.4 71 266-337 64-138 (146)
237 PF07079 DUF1347: Protein of u 95.3 3.4 7.4E-05 40.9 26.1 101 9-113 49-179 (549)
238 KOG1585 Protein required for f 95.3 2.1 4.5E-05 38.7 16.1 87 337-425 152-250 (308)
239 PF13512 TPR_18: Tetratricopep 95.2 0.75 1.6E-05 38.1 12.5 19 383-401 115-133 (142)
240 COG5107 RNA14 Pre-mRNA 3'-end 95.2 3.6 7.8E-05 40.6 28.8 400 27-430 29-530 (660)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.13 2.9E-06 50.9 9.5 62 335-396 75-141 (453)
242 PF04053 Coatomer_WDAD: Coatom 95.1 0.49 1.1E-05 48.0 13.5 133 273-432 270-403 (443)
243 PRK15331 chaperone protein Sic 95.0 0.36 7.8E-06 40.9 10.4 87 172-260 46-132 (165)
244 PF07719 TPR_2: Tetratricopept 95.0 0.055 1.2E-06 32.3 4.2 33 368-400 2-34 (34)
245 COG3118 Thioredoxin domain-con 95.0 3 6.5E-05 39.0 16.9 174 252-428 122-299 (304)
246 PF00515 TPR_1: Tetratricopept 95.0 0.04 8.6E-07 33.0 3.5 32 368-399 2-33 (34)
247 PRK09687 putative lyase; Provi 94.9 3.5 7.6E-05 39.1 26.6 79 66-144 33-117 (280)
248 PF04053 Coatomer_WDAD: Coatom 94.9 1.2 2.6E-05 45.2 15.8 130 104-258 298-427 (443)
249 PRK11906 transcriptional regul 94.9 0.55 1.2E-05 46.8 12.8 63 366-429 337-399 (458)
250 PF10300 DUF3808: Protein of u 94.6 1.8 3.9E-05 44.5 16.7 159 268-430 192-375 (468)
251 smart00299 CLH Clathrin heavy 94.6 2.3 4.9E-05 35.5 15.1 64 302-378 72-136 (140)
252 KOG0890 Protein kinase of the 94.6 14 0.0003 44.6 25.5 309 106-433 1388-1733(2382)
253 PRK11906 transcriptional regul 94.6 2 4.3E-05 42.9 15.8 159 265-426 252-431 (458)
254 PF04184 ST7: ST7 protein; In 94.5 1.9 4.1E-05 43.3 15.2 68 368-435 260-328 (539)
255 COG1729 Uncharacterized protei 94.4 0.74 1.6E-05 42.4 11.6 90 312-401 154-249 (262)
256 KOG3941 Intermediate in Toll s 94.4 0.38 8.2E-06 44.1 9.5 101 251-352 52-175 (406)
257 KOG1920 IkappaB kinase complex 94.2 9.1 0.0002 42.7 20.8 25 167-191 794-820 (1265)
258 PF13281 DUF4071: Domain of un 94.2 6.3 0.00014 38.7 19.6 72 137-208 146-227 (374)
259 PRK09687 putative lyase; Provi 94.0 5.9 0.00013 37.6 26.9 79 129-209 34-116 (280)
260 KOG1258 mRNA processing protei 93.8 9.4 0.0002 39.3 27.3 330 18-351 91-491 (577)
261 KOG1941 Acetylcholine receptor 93.6 0.82 1.8E-05 43.6 10.4 121 305-426 128-270 (518)
262 KOG2053 Mitochondrial inherita 93.6 13 0.00027 40.3 38.1 407 9-429 44-571 (932)
263 KOG3941 Intermediate in Toll s 93.6 0.64 1.4E-05 42.7 9.3 98 151-248 53-173 (406)
264 COG4105 ComL DNA uptake lipopr 93.5 6.1 0.00013 36.2 17.3 169 243-430 44-232 (254)
265 PF04184 ST7: ST7 protein; In 93.4 9.6 0.00021 38.5 18.1 56 270-325 265-321 (539)
266 smart00299 CLH Clathrin heavy 93.4 4.1 8.9E-05 34.0 15.4 128 265-413 8-136 (140)
267 PRK11619 lytic murein transgly 93.2 14 0.00031 39.7 33.3 114 278-394 255-373 (644)
268 KOG2610 Uncharacterized conser 93.2 2.5 5.3E-05 40.1 12.7 147 278-427 117-272 (491)
269 KOG4555 TPR repeat-containing 93.2 0.73 1.6E-05 37.1 8.0 88 309-398 53-146 (175)
270 PF10300 DUF3808: Protein of u 92.9 7.1 0.00015 40.3 17.2 159 201-361 191-373 (468)
271 PF02259 FAT: FAT domain; Int 92.9 10 0.00023 37.3 20.6 149 262-413 144-303 (352)
272 KOG4234 TPR repeat-containing 92.8 0.36 7.9E-06 41.9 6.3 89 344-433 104-199 (271)
273 KOG2610 Uncharacterized conser 92.5 1.4 3E-05 41.6 10.2 115 311-428 115-235 (491)
274 COG4785 NlpI Lipoprotein NlpI, 92.2 6.9 0.00015 34.8 13.3 162 264-433 99-268 (297)
275 PF13176 TPR_7: Tetratricopept 92.1 0.27 5.9E-06 29.8 3.6 26 404-429 1-26 (36)
276 PF13181 TPR_8: Tetratricopept 92.0 0.24 5.3E-06 29.4 3.3 31 369-399 3-33 (34)
277 KOG1920 IkappaB kinase complex 91.9 12 0.00026 41.8 17.7 158 84-260 894-1053(1265)
278 KOG1941 Acetylcholine receptor 91.7 4.9 0.00011 38.6 12.8 161 165-325 85-272 (518)
279 PF02259 FAT: FAT domain; Int 91.5 12 0.00027 36.8 16.9 66 365-431 144-213 (352)
280 KOG3364 Membrane protein invol 91.4 2.7 5.9E-05 34.2 9.3 91 365-481 30-124 (149)
281 KOG1586 Protein required for f 91.3 11 0.00023 34.1 14.2 61 340-400 118-187 (288)
282 PF09613 HrpB1_HrpK: Bacterial 91.2 8.4 0.00018 32.7 12.9 91 307-400 18-110 (160)
283 PF13176 TPR_7: Tetratricopept 91.2 0.3 6.6E-06 29.6 3.1 27 369-395 1-27 (36)
284 KOG2114 Vacuolar assembly/sort 91.1 25 0.00055 37.9 28.8 53 341-394 711-763 (933)
285 PF08631 SPO22: Meiosis protei 91.0 14 0.00031 35.0 24.2 17 377-393 256-272 (278)
286 COG3629 DnrI DNA-binding trans 91.0 1.5 3.3E-05 41.0 8.9 75 133-207 154-236 (280)
287 PF09613 HrpB1_HrpK: Bacterial 91.0 1.3 2.9E-05 37.4 7.7 51 379-430 22-72 (160)
288 PRK13800 putative oxidoreducta 90.6 35 0.00076 38.7 26.9 257 93-369 627-886 (897)
289 PF10602 RPN7: 26S proteasome 90.6 7.3 0.00016 34.1 12.4 60 266-325 38-99 (177)
290 TIGR02561 HrpB1_HrpK type III 90.5 1.7 3.6E-05 36.2 7.6 54 379-433 22-75 (153)
291 KOG1464 COP9 signalosome, subu 90.5 14 0.00029 34.1 13.9 229 146-380 41-317 (440)
292 COG4649 Uncharacterized protei 90.5 5.6 0.00012 34.0 10.7 120 275-395 69-195 (221)
293 COG4105 ComL DNA uptake lipopr 90.4 14 0.00031 33.9 20.5 71 266-336 36-108 (254)
294 PF13170 DUF4003: Protein of u 89.9 8.2 0.00018 36.9 13.0 49 180-228 79-133 (297)
295 PF13428 TPR_14: Tetratricopep 89.9 1.2 2.7E-05 28.3 5.3 28 165-192 3-30 (44)
296 PF10602 RPN7: 26S proteasome 89.6 5.2 0.00011 35.0 10.7 93 234-326 37-140 (177)
297 PF09205 DUF1955: Domain of un 89.3 11 0.00023 30.8 14.8 64 266-331 88-151 (161)
298 KOG0276 Vesicle coat complex C 89.2 4.6 0.0001 41.4 11.0 149 83-259 599-747 (794)
299 PF13170 DUF4003: Protein of u 89.2 6.3 0.00014 37.7 11.7 127 214-343 78-225 (297)
300 COG4649 Uncharacterized protei 89.0 5.8 0.00013 33.9 9.7 48 245-292 144-195 (221)
301 PRK13800 putative oxidoreducta 88.7 48 0.001 37.6 27.2 267 60-345 625-894 (897)
302 TIGR02508 type_III_yscG type I 88.5 9.6 0.00021 29.2 9.9 61 139-202 46-106 (115)
303 PF14853 Fis1_TPR_C: Fis1 C-te 88.2 3.1 6.6E-05 27.9 6.3 51 404-480 3-53 (53)
304 COG3629 DnrI DNA-binding trans 88.2 2.2 4.7E-05 40.0 7.6 62 368-430 154-215 (280)
305 COG2976 Uncharacterized protei 87.8 18 0.0004 31.7 14.0 128 267-401 57-193 (207)
306 KOG2114 Vacuolar assembly/sort 87.1 49 0.0011 35.9 20.7 174 135-325 337-516 (933)
307 TIGR02508 type_III_yscG type I 86.6 11 0.00023 29.0 8.9 87 214-304 21-107 (115)
308 PRK15180 Vi polysaccharide bio 86.5 14 0.00029 37.1 12.0 136 312-452 302-439 (831)
309 PF13374 TPR_10: Tetratricopep 86.4 1.4 3.1E-05 27.3 4.0 26 369-394 4-29 (42)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 86.1 5.9 0.00013 30.2 7.4 63 279-343 22-84 (103)
311 PF13431 TPR_17: Tetratricopep 86.0 0.85 1.8E-05 27.2 2.5 24 230-253 10-33 (34)
312 PF02284 COX5A: Cytochrome c o 86.0 6.1 0.00013 30.4 7.4 60 282-343 28-87 (108)
313 KOG4648 Uncharacterized conser 86.0 1.4 3.1E-05 41.6 5.1 112 305-424 103-217 (536)
314 PF00515 TPR_1: Tetratricopept 85.2 2 4.3E-05 25.3 3.9 27 266-292 3-29 (34)
315 PF13174 TPR_6: Tetratricopept 84.9 1.4 3E-05 25.7 3.1 26 374-399 7-32 (33)
316 smart00028 TPR Tetratricopepti 84.4 1.9 4.2E-05 24.2 3.7 29 370-398 4-32 (34)
317 PF07719 TPR_2: Tetratricopept 84.2 2 4.3E-05 25.2 3.6 27 404-430 3-29 (34)
318 KOG0276 Vesicle coat complex C 84.2 18 0.00039 37.4 12.0 38 145-185 599-636 (794)
319 PRK10941 hypothetical protein; 84.0 7.3 0.00016 36.6 8.9 63 369-432 183-245 (269)
320 COG4785 NlpI Lipoprotein NlpI, 83.9 32 0.00069 30.9 14.6 60 132-191 99-161 (297)
321 PF13374 TPR_10: Tetratricopep 83.7 1.9 4.2E-05 26.7 3.6 27 404-430 4-30 (42)
322 KOG4570 Uncharacterized conser 83.7 14 0.00031 34.9 10.3 98 227-328 58-164 (418)
323 PF13181 TPR_8: Tetratricopept 83.3 2.5 5.3E-05 24.9 3.8 27 404-430 3-29 (34)
324 KOG1585 Protein required for f 83.3 37 0.00079 31.1 15.2 23 166-188 94-116 (308)
325 COG1747 Uncharacterized N-term 82.1 63 0.0014 33.0 19.2 156 165-327 68-233 (711)
326 PF07035 Mic1: Colon cancer-as 82.1 32 0.00069 29.6 15.1 134 285-432 15-150 (167)
327 PRK12798 chemotaxis protein; R 82.1 57 0.0012 32.5 19.8 179 246-428 125-321 (421)
328 KOG1464 COP9 signalosome, subu 82.0 33 0.00072 31.7 11.7 178 247-424 41-253 (440)
329 PF13174 TPR_6: Tetratricopept 81.8 1.9 4.2E-05 25.0 2.9 29 404-432 2-30 (33)
330 COG2976 Uncharacterized protei 81.6 36 0.00079 29.9 13.4 87 107-193 95-189 (207)
331 PF07721 TPR_4: Tetratricopept 81.5 1.9 4.2E-05 23.8 2.6 23 404-426 3-25 (26)
332 KOG4648 Uncharacterized conser 81.1 5.2 0.00011 38.1 6.6 92 271-366 104-197 (536)
333 PF11207 DUF2989: Protein of u 80.8 9.8 0.00021 33.6 7.8 72 180-252 123-197 (203)
334 PF04910 Tcf25: Transcriptiona 80.0 66 0.0014 31.9 14.4 64 366-430 99-167 (360)
335 PF06552 TOM20_plant: Plant sp 79.9 9.2 0.0002 33.1 7.2 44 383-434 96-139 (186)
336 PF14853 Fis1_TPR_C: Fis1 C-te 79.9 2.5 5.5E-05 28.3 3.1 31 372-402 6-36 (53)
337 PRK15180 Vi polysaccharide bio 79.9 6.6 0.00014 39.1 7.1 119 277-399 302-423 (831)
338 PF11207 DUF2989: Protein of u 79.8 18 0.00039 32.0 9.1 72 282-354 124-197 (203)
339 PF07721 TPR_4: Tetratricopept 79.6 3.9 8.5E-05 22.5 3.4 21 339-359 5-25 (26)
340 PF06552 TOM20_plant: Plant sp 78.9 5 0.00011 34.6 5.3 45 383-428 51-99 (186)
341 KOG2396 HAT (Half-A-TPR) repea 77.0 91 0.002 31.8 26.5 235 182-426 301-554 (568)
342 TIGR02561 HrpB1_HrpK type III 76.8 43 0.00094 28.1 11.6 21 242-262 53-73 (153)
343 KOG4570 Uncharacterized conser 76.8 10 0.00022 35.8 7.0 96 129-228 61-165 (418)
344 KOG0890 Protein kinase of the 76.4 2E+02 0.0044 35.6 22.4 144 75-222 1388-1542(2382)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 76.3 16 0.00034 28.0 6.6 45 181-225 25-69 (103)
346 COG1747 Uncharacterized N-term 76.0 98 0.0021 31.7 23.2 166 230-402 63-240 (711)
347 COG2909 MalT ATP-dependent tra 75.9 1.3E+02 0.0028 33.1 20.8 187 244-434 426-650 (894)
348 PF08631 SPO22: Meiosis protei 75.9 74 0.0016 30.2 24.4 20 409-428 253-272 (278)
349 PF00637 Clathrin: Region in C 75.8 3.1 6.8E-05 34.8 3.4 24 163-186 42-65 (143)
350 KOG2066 Vacuolar assembly/sort 75.6 1.2E+02 0.0027 32.7 27.9 148 13-163 363-536 (846)
351 PF00637 Clathrin: Region in C 75.2 1 2.2E-05 37.8 0.3 31 348-381 109-139 (143)
352 KOG4279 Serine/threonine prote 74.7 44 0.00095 35.7 11.5 183 164-400 202-399 (1226)
353 COG3947 Response regulator con 73.7 12 0.00026 35.0 6.6 60 369-429 281-340 (361)
354 PF09477 Type_III_YscG: Bacter 73.7 41 0.0009 26.3 9.7 87 212-302 20-106 (116)
355 PF04097 Nic96: Nup93/Nic96; 73.2 50 0.0011 35.5 12.3 40 106-145 116-158 (613)
356 PF02284 COX5A: Cytochrome c o 72.3 19 0.00041 27.9 6.2 47 181-227 28-74 (108)
357 PF14561 TPR_20: Tetratricopep 72.2 6.8 0.00015 29.8 4.1 44 388-432 9-52 (90)
358 PF09986 DUF2225: Uncharacteri 71.9 19 0.00041 32.6 7.6 65 368-432 119-195 (214)
359 KOG1550 Extracellular protein 71.8 1.4E+02 0.0031 31.7 22.9 270 148-430 228-537 (552)
360 TIGR03504 FimV_Cterm FimV C-te 70.3 8.1 0.00018 24.7 3.4 27 406-432 3-29 (44)
361 TIGR02270 conserved hypothetic 70.2 1.3E+02 0.0028 30.5 22.0 235 13-262 45-281 (410)
362 KOG4234 TPR repeat-containing 69.5 47 0.001 29.4 8.9 90 310-401 106-202 (271)
363 KOG0545 Aryl-hydrocarbon recep 69.4 72 0.0016 29.3 10.2 89 343-432 186-294 (329)
364 PF10345 Cohesin_load: Cohesin 68.9 1.7E+02 0.0038 31.5 23.2 304 129-436 27-446 (608)
365 KOG0376 Serine-threonine phosp 67.3 10 0.00022 38.1 5.1 79 348-427 17-97 (476)
366 COG4455 ImpE Protein of avirul 66.8 21 0.00045 32.0 6.3 64 338-401 4-69 (273)
367 KOG1586 Protein required for f 66.6 1E+02 0.0023 28.1 15.1 60 343-402 162-230 (288)
368 PF07035 Mic1: Colon cancer-as 66.5 86 0.0019 27.0 15.9 24 267-290 92-115 (167)
369 PF10579 Rapsyn_N: Rapsyn N-te 65.6 20 0.00043 26.2 5.0 16 312-327 19-34 (80)
370 KOG1308 Hsp70-interacting prot 65.1 4.7 0.0001 38.4 2.3 86 348-434 127-214 (377)
371 KOG4077 Cytochrome c oxidase, 65.1 46 0.00099 26.9 7.3 71 282-363 67-137 (149)
372 PF07163 Pex26: Pex26 protein; 64.9 87 0.0019 29.4 10.1 87 271-360 90-183 (309)
373 PF09670 Cas_Cas02710: CRISPR- 64.8 1.2E+02 0.0026 30.3 12.3 54 273-327 140-197 (379)
374 TIGR03504 FimV_Cterm FimV C-te 64.5 17 0.00036 23.3 4.0 23 270-292 5-27 (44)
375 KOG4642 Chaperone-dependent E3 63.4 19 0.00042 32.7 5.6 66 363-429 39-105 (284)
376 cd08819 CARD_MDA5_2 Caspase ac 62.8 26 0.00057 26.2 5.3 36 145-181 49-84 (88)
377 cd08819 CARD_MDA5_2 Caspase ac 62.7 31 0.00068 25.8 5.7 32 84-116 50-81 (88)
378 PF13934 ELYS: Nuclear pore co 62.4 1.3E+02 0.0027 27.6 14.3 103 73-177 79-186 (226)
379 TIGR02270 conserved hypothetic 61.7 1.9E+02 0.0041 29.3 24.5 120 232-362 160-279 (410)
380 KOG3807 Predicted membrane pro 61.0 1.5E+02 0.0032 28.5 11.0 18 385-402 380-397 (556)
381 PF07163 Pex26: Pex26 protein; 60.0 1.1E+02 0.0024 28.7 9.9 85 170-256 90-181 (309)
382 PF11768 DUF3312: Protein of u 59.3 1.2E+02 0.0027 31.4 11.1 56 237-292 412-472 (545)
383 PF10366 Vps39_1: Vacuolar sor 59.1 88 0.0019 24.7 8.5 27 165-191 41-67 (108)
384 PF09477 Type_III_YscG: Bacter 58.5 89 0.0019 24.6 9.0 53 139-193 47-99 (116)
385 smart00386 HAT HAT (Half-A-TPR 58.1 16 0.00035 20.7 3.1 29 381-410 1-29 (33)
386 PF07720 TPR_3: Tetratricopept 57.9 29 0.00064 21.0 4.1 29 370-398 4-34 (36)
387 KOG4507 Uncharacterized conser 57.1 52 0.0011 34.2 7.9 87 42-128 216-310 (886)
388 PF10579 Rapsyn_N: Rapsyn N-te 57.0 24 0.00052 25.8 4.2 45 379-424 18-65 (80)
389 PF10366 Vps39_1: Vacuolar sor 56.9 77 0.0017 25.0 7.5 27 266-292 41-67 (108)
390 KOG1550 Extracellular protein 54.7 2.9E+02 0.0063 29.4 20.6 171 179-359 228-421 (552)
391 PF11846 DUF3366: Domain of un 54.6 48 0.001 29.4 6.9 35 364-398 141-175 (193)
392 KOG1498 26S proteasome regulat 54.5 2.3E+02 0.005 28.1 14.4 109 339-451 135-261 (439)
393 KOG0292 Vesicle coat complex C 54.1 20 0.00044 38.8 4.8 74 305-394 626-699 (1202)
394 KOG2422 Uncharacterized conser 53.5 2.3E+02 0.0049 29.7 11.7 54 375-429 350-405 (665)
395 COG4976 Predicted methyltransf 53.3 20 0.00044 32.3 4.0 56 345-400 5-62 (287)
396 KOG2063 Vacuolar assembly/sort 53.1 3.7E+02 0.0081 30.1 15.6 27 165-191 506-532 (877)
397 KOG2396 HAT (Half-A-TPR) repea 53.1 2.7E+02 0.006 28.6 24.7 233 153-400 303-564 (568)
398 PF15469 Sec5: Exocyst complex 52.9 1.6E+02 0.0034 25.8 10.0 55 267-327 60-114 (182)
399 PF14863 Alkyl_sulf_dimr: Alky 52.9 56 0.0012 27.3 6.4 66 351-420 57-122 (141)
400 PRK11619 lytic murein transgly 52.5 3.4E+02 0.0074 29.5 36.3 403 18-434 45-508 (644)
401 PF12862 Apc5: Anaphase-promot 52.4 39 0.00085 25.8 5.2 53 378-430 9-69 (94)
402 KOG3824 Huntingtin interacting 52.2 32 0.00069 32.5 5.2 57 346-402 127-185 (472)
403 PF06957 COPI_C: Coatomer (COP 51.8 76 0.0016 32.0 8.2 44 358-401 289-334 (422)
404 PF11846 DUF3366: Domain of un 51.8 50 0.0011 29.3 6.6 51 311-361 120-170 (193)
405 PF11838 ERAP1_C: ERAP1-like C 49.9 2.5E+02 0.0053 27.1 17.4 83 314-396 145-230 (324)
406 COG5159 RPN6 26S proteasome re 49.1 1.6E+02 0.0034 27.9 9.0 48 270-317 9-63 (421)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 48.8 97 0.0021 25.2 7.2 42 385-427 81-124 (126)
408 KOG0551 Hsp90 co-chaperone CNS 48.6 97 0.0021 29.9 7.8 88 340-428 86-179 (390)
409 PF13762 MNE1: Mitochondrial s 48.5 1.3E+02 0.0028 25.2 7.8 76 136-211 43-128 (145)
410 KOG3364 Membrane protein invol 48.1 82 0.0018 26.0 6.3 34 369-402 73-106 (149)
411 cd08326 CARD_CASP9 Caspase act 47.9 44 0.00096 24.9 4.6 52 129-180 27-78 (84)
412 KOG0292 Vesicle coat complex C 47.4 3.7E+02 0.0081 29.9 12.5 131 241-395 651-781 (1202)
413 PF12862 Apc5: Anaphase-promot 47.4 63 0.0014 24.6 5.6 26 371-396 45-70 (94)
414 COG0790 FOG: TPR repeat, SEL1 47.4 2.5E+02 0.0055 26.6 19.3 77 353-433 173-268 (292)
415 PRK10564 maltose regulon perip 47.1 39 0.00085 32.0 5.1 41 266-306 259-299 (303)
416 KOG2300 Uncharacterized conser 46.9 3.4E+02 0.0074 27.9 28.3 17 175-191 335-351 (629)
417 PF08967 DUF1884: Domain of un 45.9 22 0.00047 26.0 2.5 28 460-487 6-33 (85)
418 PRK13342 recombination factor 45.8 3.4E+02 0.0073 27.5 15.8 116 180-313 154-279 (413)
419 TIGR01503 MthylAspMut_E methyl 45.7 45 0.00097 33.6 5.5 229 178-454 29-294 (480)
420 PF04090 RNA_pol_I_TF: RNA pol 45.3 1.6E+02 0.0036 26.2 8.4 61 369-429 43-103 (199)
421 PF11663 Toxin_YhaV: Toxin wit 45.2 27 0.00058 28.6 3.2 34 173-208 105-138 (140)
422 KOG0686 COP9 signalosome, subu 44.8 3.3E+02 0.0073 27.2 14.6 59 133-191 151-215 (466)
423 COG4976 Predicted methyltransf 44.7 38 0.00083 30.6 4.3 57 377-434 5-61 (287)
424 PF10255 Paf67: RNA polymerase 44.6 92 0.002 31.2 7.5 54 137-190 127-191 (404)
425 PF10255 Paf67: RNA polymerase 44.4 1.4E+02 0.003 30.0 8.7 52 106-157 127-189 (404)
426 PRK10564 maltose regulon perip 44.0 43 0.00094 31.7 4.9 43 161-203 254-297 (303)
427 PF14561 TPR_20: Tetratricopep 43.4 1.4E+02 0.0031 22.5 9.8 63 365-428 20-85 (90)
428 KOG4507 Uncharacterized conser 43.3 1E+02 0.0023 32.1 7.6 83 348-431 620-705 (886)
429 COG4455 ImpE Protein of avirul 43.3 2.6E+02 0.0056 25.4 12.1 126 266-402 3-140 (273)
430 PF08424 NRDE-2: NRDE-2, neces 43.2 3.2E+02 0.007 26.5 15.5 115 280-397 47-184 (321)
431 PF14689 SPOB_a: Sensor_kinase 43.1 31 0.00068 23.9 3.0 30 162-191 22-51 (62)
432 PF04034 DUF367: Domain of unk 43.0 1.8E+02 0.004 23.6 7.7 56 335-390 66-122 (127)
433 COG3947 Response regulator con 42.2 3.1E+02 0.0068 26.1 14.7 45 343-387 287-333 (361)
434 PF11663 Toxin_YhaV: Toxin wit 41.4 29 0.00062 28.4 2.9 32 276-309 107-138 (140)
435 KOG2034 Vacuolar sorting prote 41.3 5.4E+02 0.012 28.6 23.7 51 108-158 365-415 (911)
436 cd00280 TRFH Telomeric Repeat 39.9 95 0.0021 27.1 5.8 28 374-402 118-145 (200)
437 PF07575 Nucleopor_Nup85: Nup8 39.2 5.1E+02 0.011 27.7 14.4 63 263-327 371-433 (566)
438 KOG0403 Neoplastic transformat 38.6 4.4E+02 0.0095 26.8 19.2 59 338-396 512-572 (645)
439 cd08326 CARD_CASP9 Caspase act 37.5 83 0.0018 23.5 4.7 34 82-115 42-75 (84)
440 PF11848 DUF3368: Domain of un 37.4 1.2E+02 0.0025 19.8 5.3 33 275-307 13-45 (48)
441 PF14689 SPOB_a: Sensor_kinase 37.1 61 0.0013 22.5 3.7 43 250-292 7-51 (62)
442 PHA02537 M terminase endonucle 36.6 2.7E+02 0.0058 25.6 8.6 25 274-298 93-118 (230)
443 cd00280 TRFH Telomeric Repeat 36.2 2.2E+02 0.0047 25.0 7.4 31 341-371 117-147 (200)
444 COG2909 MalT ATP-dependent tra 36.2 6.5E+02 0.014 28.1 25.3 187 174-361 426-644 (894)
445 KOG4077 Cytochrome c oxidase, 36.1 1.8E+02 0.0039 23.7 6.4 43 184-226 70-112 (149)
446 COG5108 RPO41 Mitochondrial DN 35.5 2E+02 0.0043 30.7 8.3 47 269-315 33-81 (1117)
447 PRK10941 hypothetical protein; 35.4 3.9E+02 0.0084 25.2 10.6 58 268-327 185-243 (269)
448 COG0790 FOG: TPR repeat, SEL1 35.0 4E+02 0.0086 25.2 20.4 49 147-195 92-145 (292)
449 PF11525 CopK: Copper resistan 34.6 17 0.00037 25.5 0.5 21 547-567 8-28 (73)
450 PF12968 DUF3856: Domain of Un 34.1 1.9E+02 0.0041 23.3 6.2 64 366-430 54-128 (144)
451 KOG2300 Uncharacterized conser 33.9 5.5E+02 0.012 26.5 28.3 362 54-426 69-509 (629)
452 cd08332 CARD_CASP2 Caspase act 33.6 96 0.0021 23.5 4.6 36 143-178 45-80 (90)
453 COG0735 Fur Fe2+/Zn2+ uptake r 32.6 2.6E+02 0.0056 23.5 7.5 46 305-351 26-71 (145)
454 KOG2659 LisH motif-containing 32.0 4E+02 0.0086 24.3 9.3 93 266-361 28-129 (228)
455 KOG4567 GTPase-activating prot 31.8 4.7E+02 0.01 25.1 10.2 73 284-362 263-345 (370)
456 COG5191 Uncharacterized conser 31.7 1.2E+02 0.0025 29.0 5.5 76 331-407 103-181 (435)
457 COG4941 Predicted RNA polymera 31.7 5E+02 0.011 25.3 10.8 119 280-402 272-400 (415)
458 PF11817 Foie-gras_1: Foie gra 31.5 2.8E+02 0.0061 25.7 8.3 21 270-290 184-204 (247)
459 smart00638 LPD_N Lipoprotein N 31.0 6.8E+02 0.015 26.7 25.2 60 132-193 310-370 (574)
460 PF04097 Nic96: Nup93/Nic96; 30.9 7.1E+02 0.015 26.9 19.8 21 345-365 515-535 (613)
461 PRK14962 DNA polymerase III su 30.9 5.2E+02 0.011 26.8 10.8 25 175-199 255-279 (472)
462 PF04190 DUF410: Protein of un 30.7 4.6E+02 0.0099 24.6 15.9 159 245-431 2-170 (260)
463 KOG4521 Nuclear pore complex, 30.6 9.1E+02 0.02 28.1 15.2 118 302-424 986-1124(1480)
464 PF13762 MNE1: Mitochondrial s 30.6 3.3E+02 0.0071 22.9 10.4 50 263-312 78-128 (145)
465 PRK13342 recombination factor 30.5 5.9E+02 0.013 25.8 13.0 44 165-208 229-275 (413)
466 PF12069 DUF3549: Protein of u 30.4 5.3E+02 0.011 25.2 12.9 129 103-234 131-266 (340)
467 KOG0687 26S proteasome regulat 30.3 5.2E+02 0.011 25.1 12.8 93 301-395 106-209 (393)
468 PF11817 Foie-gras_1: Foie gra 30.1 2E+02 0.0043 26.7 7.1 54 340-393 183-244 (247)
469 PF11768 DUF3312: Protein of u 29.9 3.9E+02 0.0084 28.0 9.3 57 135-191 411-472 (545)
470 KOG2471 TPR repeat-containing 29.9 4.5E+02 0.0098 27.1 9.4 139 205-346 213-380 (696)
471 PRK11639 zinc uptake transcrip 29.9 2.3E+02 0.005 24.5 7.0 61 290-352 17-77 (169)
472 COG5159 RPN6 26S proteasome re 29.7 5E+02 0.011 24.7 13.0 120 169-288 9-149 (421)
473 COG4259 Uncharacterized protei 29.4 1.7E+02 0.0036 22.7 5.0 39 388-427 58-97 (121)
474 cd08332 CARD_CASP2 Caspase act 29.1 1.5E+02 0.0032 22.5 4.9 36 80-115 44-79 (90)
475 COG2912 Uncharacterized conser 28.7 4.1E+02 0.0088 25.0 8.5 58 372-430 186-243 (269)
476 KOG4642 Chaperone-dependent E3 28.1 4.9E+02 0.011 24.1 9.8 81 243-325 20-104 (284)
477 COG5108 RPO41 Mitochondrial DN 27.5 3.2E+02 0.007 29.2 8.3 70 106-175 33-115 (1117)
478 PRK08691 DNA polymerase III su 27.4 8.6E+02 0.019 26.7 11.9 98 180-298 181-279 (709)
479 PF04090 RNA_pol_I_TF: RNA pol 27.3 3.1E+02 0.0067 24.5 7.2 30 264-293 41-70 (199)
480 PF15015 NYD-SP12_N: Spermatog 27.0 1.7E+02 0.0038 29.2 6.0 17 341-357 234-250 (569)
481 PF12069 DUF3549: Protein of u 26.7 6.2E+02 0.013 24.8 12.5 86 239-327 172-258 (340)
482 KOG0686 COP9 signalosome, subu 26.6 6.7E+02 0.015 25.2 14.6 93 165-259 152-255 (466)
483 PF04190 DUF410: Protein of un 26.4 5.4E+02 0.012 24.1 19.6 83 231-328 88-170 (260)
484 COG5187 RPN7 26S proteasome re 26.3 3.5E+02 0.0075 25.7 7.5 97 332-428 112-218 (412)
485 KOG3807 Predicted membrane pro 26.3 4.7E+02 0.01 25.4 8.5 52 239-290 281-337 (556)
486 KOG3636 Uncharacterized conser 26.2 5.5E+02 0.012 26.0 9.2 84 192-276 177-272 (669)
487 PF09797 NatB_MDM20: N-acetylt 25.4 2.2E+02 0.0047 28.3 6.9 61 367-428 180-243 (365)
488 KOG0991 Replication factor C, 25.4 5.4E+02 0.012 23.7 11.7 150 137-311 135-284 (333)
489 KOG3824 Huntingtin interacting 25.4 1.2E+02 0.0026 28.8 4.5 55 309-366 126-182 (472)
490 cd08323 CARD_APAF1 Caspase act 25.3 3E+02 0.0064 20.7 6.0 34 144-177 40-73 (86)
491 PF09986 DUF2225: Uncharacteri 25.2 5.1E+02 0.011 23.4 8.5 48 281-328 142-194 (214)
492 PF11838 ERAP1_C: ERAP1-like C 25.1 6.2E+02 0.013 24.3 18.5 79 214-292 146-229 (324)
493 PRK02287 hypothetical protein; 24.7 4.6E+02 0.01 22.7 7.7 25 337-361 109-133 (171)
494 cd07153 Fur_like Ferric uptake 24.7 1.9E+02 0.004 22.9 5.2 46 270-315 6-51 (116)
495 KOG1308 Hsp70-interacting prot 24.5 67 0.0014 31.0 2.8 116 311-430 126-243 (377)
496 COG2256 MGS1 ATPase related to 24.5 7.4E+02 0.016 25.0 12.7 52 161-212 244-298 (436)
497 COG0735 Fur Fe2+/Zn2+ uptake r 24.3 4.1E+02 0.009 22.2 7.3 41 167-207 24-64 (145)
498 PF08424 NRDE-2: NRDE-2, neces 24.3 6.6E+02 0.014 24.4 15.4 119 315-435 47-187 (321)
499 PF10475 DUF2450: Protein of u 24.2 4.5E+02 0.0097 25.1 8.5 140 117-258 83-222 (291)
500 cd08323 CARD_APAF1 Caspase act 24.1 2.6E+02 0.0057 21.0 5.4 28 116-143 43-70 (86)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-114 Score=929.67 Aligned_cols=566 Identities=35% Similarity=0.633 Sum_probs=538.2
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHH
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~ 78 (571)
.||..+|+.++.+|++.+ +++.|.++|..|.+ ||+.+||.|+.+|++. |++++|.++|++|+.||.++||++|.
T Consensus 120 ~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 120 TLPASTYDALVEACIALK-SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC-GMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC-CCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 467788888888888887 88888888887753 7888888888888888 88888888888888888888888888
Q ss_pred HHHcCCCHHHHHHHHhhCC----CCCcchHHHHHHHHHHcCChHHHHHHHhhC----CCCChhHHHHHHHHHHhcCCHHH
Q 008280 79 GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVA----PVKSVVAWTAMISGYMKFGKVDL 150 (571)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~ 150 (571)
+|++.|++++|+++|++|. .||..+|+.++.+|++.|..+.+.+++..+ ..+|..++++|+++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 8888888888888888884 367788888888888888888888876654 36788999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 008280 151 AEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230 (571)
Q Consensus 151 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 230 (571)
|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|..+.+.|++
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 310 (571)
+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
+.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.++
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHH
Q 008280 391 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 470 (571)
Q Consensus 391 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~ 470 (571)
+++++++|++.. +|..|+++|++.|+|++|.++++.|+++|+.+.||+||+++++.+|.|.+||.+||+.++|+..+.+
T Consensus 518 ~~l~~~~p~~~~-~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 518 EKLYGMGPEKLN-NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHhCCCCCCCc-chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 999999999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccCCcccccccchhhhhhhhhhchHHHHHHHhccCCCCCCcEEEeccccccccccchhhhhhhhccceEE
Q 008280 471 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 550 (571)
Q Consensus 471 ~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (571)
+..+|++.||.||+.+++||+++++++..+..||||||++|||+++|+|.||||+||||+|+|||+|+|+||++++|+||
T Consensus 597 l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 676 (697)
T PLN03081 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIV 676 (697)
T ss_pred HHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCCccCCCCCC
Q 008280 551 VRDTTRFHHFKDGTCSCGDYW 571 (571)
Q Consensus 551 ~~~~~~~h~~~~g~~s~~~~~ 571 (571)
|||.+|||||+||+|||+|||
T Consensus 677 ~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 677 VRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EecCCccccCCCCcccccccC
Confidence 999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-111 Score=926.70 Aligned_cols=561 Identities=39% Similarity=0.726 Sum_probs=542.7
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhhCC----------------
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---------------- 66 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~---------------- 66 (571)
.||+.++|+|+.+|+++| ++++|.++|+.|++||+++||+||.+|++. |++++|+++|++|.
T Consensus 219 ~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~~~~~~-g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 219 ELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMISGYFEN-GECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 478899999999999999 999999999999999999999999999999 99999999999984
Q ss_pred -----------------------CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHH
Q 008280 67 -----------------------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123 (571)
Q Consensus 67 -----------------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~ 123 (571)
.||..+||+||.+|+++|++++|.++|++|.+||.++|+++|.+|.+.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 257888999999999999999999999999999999999999999999999999999
Q ss_pred HhhCC---------------------------------------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHH
Q 008280 124 FKVAP---------------------------------------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164 (571)
Q Consensus 124 ~~~~~---------------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (571)
|++|. .++..++|+|+++|+++|++++|.++|++|.++|++
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 99874 356678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 244 (571)
+||+||.+|.+.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.++++|..+.+.|+.++..++++|+++|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5899999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 008280 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 324 (571)
++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 536 k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchh
Q 008280 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404 (571)
Q Consensus 325 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 404 (571)
|.+++|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++++++|+++. .
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~-~ 693 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG-Y 693 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc-h
Confidence 997789999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcccCC
Q 008280 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 484 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~ 484 (571)
|..|+++|+..|+|++|.++++.|+++|+.++||+|||++++++|.|.+||.+||+.++||..|+++.++|++.||+||+
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhhhhchHHHHHHHhccCCCCCCcEEEeccccccccccchhhhhhhhccceEEEecCCccccccCCc
Q 008280 485 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 564 (571)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~ 564 (571)
...+ ++++++|+..++.||||||++|||+++|+|.||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+
T Consensus 774 ~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~ 852 (857)
T PLN03077 774 SSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGE 852 (857)
T ss_pred chhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCc
Confidence 9877 557788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 008280 565 CSCGD 569 (571)
Q Consensus 565 ~s~~~ 569 (571)
|||+|
T Consensus 853 csc~d 857 (857)
T PLN03077 853 CSCGD 857 (857)
T ss_pred ccCCC
Confidence 99998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-66 Score=573.36 Aligned_cols=536 Identities=24% Similarity=0.346 Sum_probs=441.2
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhhCC----C-----------
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----I----------- 67 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~----~----------- 67 (571)
.+++.++|+|+.+|+++| +++.|.++|++|++||+++||+||.+|++. |++++|+++|++|. .
T Consensus 118 ~~~~~~~n~li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~~~~~-g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKA-GYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCchHHHHHHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 456777788888888887 888888888888888888888888888887 88888888887774 1
Q ss_pred ------------------------CChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHH
Q 008280 68 ------------------------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123 (571)
Q Consensus 68 ------------------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~ 123 (571)
+|+.++|+||.+|+++|++++|.++|++|+++|.++||++|.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 24555677777778888888888888888878888888888888888888888888
Q ss_pred HhhCC---------------------------------------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHH
Q 008280 124 FKVAP---------------------------------------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV 164 (571)
Q Consensus 124 ~~~~~---------------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (571)
|++|. .+|+.+||+|+.+|+++|++++|.++|++|..||++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 77763 467889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 244 (571)
+||+||.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 008280 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 324 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 324 (571)
++|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 5999999999999999999999999999999
Q ss_pred hHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc--cCCCCCc
Q 008280 325 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN--LNPANAA 402 (571)
Q Consensus 325 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~ 402 (571)
+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|++|+.+|.++|+.++|+++|++|.+ ..|+..
T Consensus 515 ~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~- 590 (857)
T PLN03077 515 VLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV- 590 (857)
T ss_pred HHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-
Confidence 9886 99999999999999999999999999999999 69999999999999999999999999999987 457765
Q ss_pred hhHHHHHHHHhhccChhHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEecCCCCCcccHHHH---HHHHHHHHHHHHc
Q 008280 403 GCYVQLANIYAAMKKWDDVARIRLSMK-ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH---EKLKELEKRMKLA 478 (571)
Q Consensus 403 ~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~---~~l~~~~~~m~~~ 478 (571)
+|..++.+|++.|++++|.++|+.|. +.|+.|.... +....+.+ ..++++.+.++++
T Consensus 591 -T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 591 -TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred -cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHC
Confidence 89999999999999999999999998 6787754310 11112222 1256667777777
Q ss_pred CcccCCcccccccchhhhhhhhhhchHHHH-HHHhccCCCCCCcEEEeccccccccccchhhhhhhhccc--------eE
Q 008280 479 GYVPDLEFALHAVGEEVKEQLLLFHSEKLA-IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR--------EI 549 (571)
Q Consensus 479 g~~pd~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 549 (571)
+..||...|...+..+.....+- ..+..+ ..+.+.+...+..+.+..-....|+..++.++...|..+ ..
T Consensus 652 ~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 652 PITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 89999999865554443211110 011111 122333333333322223335678888888888777655 22
Q ss_pred EEecCCccccccCCccC
Q 008280 550 IVRDTTRFHHFKDGTCS 566 (571)
Q Consensus 550 ~~~~~~~~h~~~~g~~s 566 (571)
|.- .+..|-|..|--|
T Consensus 731 ie~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 731 VEV-KGKVHAFLTDDES 746 (857)
T ss_pred EEE-CCEEEEEecCCCC
Confidence 222 3567788655443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-59 Score=506.26 Aligned_cols=432 Identities=18% Similarity=0.251 Sum_probs=399.0
Q ss_pred CCCCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCCHHHHHHHHhhCC----CCChhh
Q 008280 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTAS 72 (571)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~----~~d~~~ 72 (571)
|+.||..+|+.|+++|++.| ++++|.++|+.|.+ ||..+||+||.+|++. |++++|.++|++|. .||..+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHH
Confidence 46699999999999999999 99999999999974 8999999999999999 99999999999998 589999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCC----CCCcchHHHHHHHHHHcCChHHHHHHHhhCC------CCChhHHHHHHHHH
Q 008280 73 WNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP------VKSVVAWTAMISGY 142 (571)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~ 142 (571)
||+||.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|. .+|..+|++|+.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999995 4899999999999999999999999999884 57889999999999
Q ss_pred HhcCCHHHHHHHHhhCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHH
Q 008280 143 MKFGKVDLAEKLFDEMPT----KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218 (571)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 218 (571)
+++|++++|.++|++|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999985 6779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 008280 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ----RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294 (571)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 294 (571)
++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 5899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH----HcC-------------------CH
Q 008280 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG----RAG-------------------KL 351 (571)
Q Consensus 295 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~ 351 (571)
+.||..||+.++.+|.+.|++++|.++|..|.+. |+.||..+|++++.++. +++ ..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 9999999999999999999999999999999886 99999999999998743 222 24
Q ss_pred HHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc-cCCCCCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 352 VEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN-LNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 352 ~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
++|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+.. +|..|++++.+. .++|..++++
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhHHHHHhhccC--hHHHHHHHHH
Confidence 6799999999 7899999999999888888889988888887743 2333344 899999988432 3689999999
Q ss_pred HHhCCCccCCc
Q 008280 428 MKENNVVKMPG 438 (571)
Q Consensus 428 m~~~~~~~~~~ 438 (571)
|.+.|+.|...
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999987654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-59 Score=507.35 Aligned_cols=514 Identities=14% Similarity=0.237 Sum_probs=415.9
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCCCCh-----hhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHH
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-----VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li 77 (571)
.++...|..++..++++| ++++|.++|+.|++++. .+++.++..|.+. |.+++|..+|+.|..||..+||.+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDG-RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCchHHHHHHHHHHHCc-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356677888888889998 99999999999986444 4556677778888 9999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhhCC----CCCcchHHHHHHHHHHcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHH
Q 008280 78 SGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVD 149 (571)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~ 149 (571)
.+|++.|++++|.++|+.|. .||..+|+++|.+|++.|++++|.++|++|. .+|..+|++||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999985 4788999999999999999999999999886 678899999999999999999
Q ss_pred HHHHHHhhCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhccCchHHHHHHHHH
Q 008280 150 LAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223 (571)
Q Consensus 150 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 223 (571)
+|.++|++|. .||.++||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999986 48899999999999999999999999999976 57899999999999999999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008280 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299 (571)
Q Consensus 224 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 299 (571)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999874 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSA 376 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~ 376 (571)
.+|+.++.+|++.|++++|.++|++|.+. ++.|+..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999775 89999999999999999999999999999988 678999999999999
Q ss_pred HHhcCCHhHHHHHHHHHhccC--CCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc-cCCceeEEEECCEEEEEec
Q 008280 377 CRVHKRLDLAEFAAMNLFNLN--PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV-KMPGYSWIEVGTVVHEFRS 453 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~s~~~~~~~~~~f~~ 453 (571)
|.+.|++++|.+++.+|.+.+ |+. . +|..|+.+|. ++++++.++.+.+..-+.. .....+|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~-~-tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w------------ 827 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNL-V-MCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKW------------ 827 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccch------------
Confidence 999999999999999998754 543 3 7888877654 2456665554443321100 0000011
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhhhchHHHHHHHhccCCCCCCcE--EEecccccc
Q 008280 454 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI--RVFKNLRVC 531 (571)
Q Consensus 454 ~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 531 (571)
..+...++++|.+.|+.||..++...+....+... ......+--.++..+.+++... .+++.+ |
T Consensus 828 -----------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~ 893 (1060)
T PLN03218 828 -----------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--G 893 (1060)
T ss_pred -----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--c
Confidence 13366889999999999999888655421111111 1223344445666655554332 233332 1
Q ss_pred ccccchhhhhhhhccceE
Q 008280 532 GDCHRATKYISAIEKREI 549 (571)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~ 549 (571)
..-++|+.++..|..+.|
T Consensus 894 ~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 894 EYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred cChHHHHHHHHHHHHcCC
Confidence 112468888887776644
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-56 Score=479.61 Aligned_cols=475 Identities=22% Similarity=0.322 Sum_probs=407.1
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHhhCC-----CCCcchHHHHHHHHHHcCChHHHHHHHhhCC----CCChhHHHHH
Q 008280 68 KDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAM 138 (571)
Q Consensus 68 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l 138 (571)
++..+|+++|..|.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|. .+|+.++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 467799999999999999999999999995 3688999999999999999999999998774 6889999999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHH
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 218 (571)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008280 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298 (571)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 298 (571)
++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 008280 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378 (571)
Q Consensus 299 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 378 (571)
..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999986 999999999999999999999999999999997 589999999999999
Q ss_pred hcCCHhHHHHHHHHHhc--cCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEecCC
Q 008280 379 VHKRLDLAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE-NNVVKMPGYSWIEVGTVVHEFRSGD 455 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~f~~~~ 455 (571)
++|+.++|.++|++|.+ ..|+.. +|..++.+|.+.|++++|.++|+.|.+ .|+.|... .|.. ++.+.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-~y~~-------li~~l 472 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHV--TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-HYAC-------MIELL 472 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-chHh-------HHHHH
Confidence 99999999999999976 457654 999999999999999999999999986 57765431 1100 11111
Q ss_pred CCCcccHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhh---hchHHHHHHHhccCCCCCCcEEEeccccccc
Q 008280 456 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL---FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 532 (571)
Q Consensus 456 ~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 532 (571)
...+ .++++.+.+++.++.||..+|...+..+.+...+- ...++ .+++.+...+..+.+.+-...+|
T Consensus 473 ~r~G-------~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 473 GREG-------LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HhcC-------CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCC
Confidence 1111 25566677778899999998855444433322210 11111 13333333334444556678899
Q ss_pred cccchhhhhhhhccceEE-------EecCCccccccCCc
Q 008280 533 DCHRATKYISAIEKREII-------VRDTTRFHHFKDGT 564 (571)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~~g~ 564 (571)
+..+|.+++..|..+.+. +.-.+..|.|-.|-
T Consensus 543 ~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 999999999988877442 11234567775553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.3e-27 Score=268.36 Aligned_cols=418 Identities=13% Similarity=0.091 Sum_probs=302.6
Q ss_pred cchHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 008280 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTMISG 79 (571)
Q Consensus 6 ~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~ 79 (571)
......++..|.+.| ++++|.++++.+.. ++..+|+.+...+... |++++|.+.|+++.. .+...+..+...
T Consensus 431 ~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 508 (899)
T TIGR02917 431 GRADLLLILSYLRSG-QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIEPDFFPAAANLARI 508 (899)
T ss_pred hhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 345566777777887 88888888877754 4556777777778777 888888888877542 345567777778
Q ss_pred HHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHH
Q 008280 80 FVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEK 153 (571)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 153 (571)
+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...++++. +.+...+..++..|.+.|++++|..
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888877743 355677777778888888888888877664 3344666777778888888888888
Q ss_pred HHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 008280 154 LFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230 (571)
Q Consensus 154 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 230 (571)
+++.+.. .+...|..++.+|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 8877653 456677888888888888888888888777643 3345566677777777888888888887777654 4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
.+...+..++..+...|++++|.++++.+.+ .+...|..+...+...|++++|+..|+++...+ |+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 4566777777788888888888888777754 345567777777777888888888887777643 44456666777
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 385 (571)
++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ..++++.+++.+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 77777777777777777765 33555677777777777777887777777776 222456677777777777777 66
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
|+..++++++..|+++. .+..++.+|...|++++|.++++++.+.+.
T Consensus 822 A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPA-ILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCCCCcH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777776 777777777777777777777777776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.2e-27 Score=265.28 Aligned_cols=419 Identities=14% Similarity=0.083 Sum_probs=321.0
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC---CChhhHHHH
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTM 76 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~l 76 (571)
+.+...+..+...+...| +.++|.+.|+.+.+ | +...+..++..+.+. |++++|.++++.+.. ++..+|+.+
T Consensus 394 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 471 (899)
T TIGR02917 394 PENAAARTQLGISKLSQG-DPSEAIADLETAAQLDPELGRADLLLILSYLRS-GQFDKALAAAKKLEKKQPDNASLHNLL 471 (899)
T ss_pred CCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 345566777777888887 88888888877654 2 234555667777777 888888888887653 456778888
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHH
Q 008280 77 ISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDL 150 (571)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 150 (571)
...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+.+. +.+..++..+...|.+.|+.++
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887643 345567777788888888888888887764 3456777788888888888888
Q ss_pred HHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC
Q 008280 151 AEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227 (571)
Q Consensus 151 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (571)
|...|+++.. .+...+..++..|...|++++|+.+++++.... +.+..++..+...+...|++++|...++.+.+.
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888887753 345677778888888888888888888887643 456677888888888888888888888888776
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008280 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304 (571)
Q Consensus 228 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 304 (571)
. +.+...+..++.+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|..+++.+...+ +++...+..
T Consensus 631 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 708 (899)
T TIGR02917 631 Q-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFEL 708 (899)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHH
Confidence 4 45566777888888888888888888887653 356778888888888888888888888887764 445666777
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCC
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKR 382 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 382 (571)
+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++ ..+.+...+..+...|...|+
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 777888888888888888887753 455577777888888888888888888776 223456777788888888888
Q ss_pred HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
.++|...|+++++..|+++. ++..++.++...|+ ++|..++++..+.
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAV-VLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88888888888888888877 88888888888888 7788888877654
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=1.7e-29 Score=201.14 Aligned_cols=106 Identities=67% Similarity=1.053 Sum_probs=95.8
Q ss_pred ceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcccCCcccccccchhhh--------hhhhhhchHHHHH
Q 008280 438 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK--------EQLLLFHSEKLAI 509 (571)
Q Consensus 438 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~~a~ 509 (571)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.|++.++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899986 9999999999987 456677888999999999888777655 5578999999999
Q ss_pred HHhccCCCCCCcEEEeccc-cccccccchhhhhhhhccceEEEecCCcccccc
Q 008280 510 AFGLIKVPLGTPIRVFKNL-RVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 561 (571)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 561 (571)
+||++++ +|+||+ |+|+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899998 999999999999999999999999999999996
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-21 Score=187.80 Aligned_cols=358 Identities=16% Similarity=0.192 Sum_probs=164.0
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CCcc-hHHHHHHHHHHcCChHHHHHHHhh
Q 008280 53 DDVVAAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNSV-SWSAMISGYIECGQLDKAVELFKV 126 (571)
Q Consensus 53 g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~-~~~~li~~~~~~g~~~~A~~~~~~ 126 (571)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|....+ |+.+ ..+.+....-..|++++|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 444555544444432 1233444444444445555544444444433 2211 111222223334444444444443
Q ss_pred CCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-Hh
Q 008280 127 APVKSV---VAWTAMISGYMKFGKVDLAEKLFDEMPTKNL---VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN-AS 199 (571)
Q Consensus 127 ~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~ 199 (571)
....++ ++|+.|...+-..|++-.|+.-|++...-|+ .+|-.|...|...+.+++|+..|.+.... .|+ ..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~ 287 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAV 287 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchh
Confidence 332221 3444455555555555555555554443221 24444555555555555555555444432 232 23
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHH
Q 008280 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQ 276 (571)
Q Consensus 200 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 276 (571)
.+..+...|-..|.++.|...|++.+... +.-...|+.|.+++-..|++.+|.+.+.+... .-..+.+.|..+|..
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444444444555555555555554442 22344455555555555555555555554432 123344455555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHH
Q 008280 277 HGKGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 277 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 354 (571)
.|.+++|..+|....+ +.|.- ..++.|...|.+.|++++|...|++.+ .+.|+ ...|+.+...|-..|+.+.|
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHH
Confidence 5555555555554443 22222 234445555555555555555555444 23444 34455555555555555555
Q ss_pred HHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChh
Q 008280 355 VDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419 (571)
Q Consensus 355 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 419 (571)
++.+.+. .+.|. ....+.|...|...|+..+|++.++.++++.|+.+. +|-.|+.+.---.+|.
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd-A~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD-AYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch-hhhHHHHHHHHHhccc
Confidence 5555444 33333 234445555555555555555555555555555554 5544444443333333
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=7.9e-20 Score=207.04 Aligned_cols=409 Identities=10% Similarity=0.030 Sum_probs=320.1
Q ss_pred HHHHHhCCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CCh---hhHHH---------
Q 008280 13 LAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDT---ASWNT--------- 75 (571)
Q Consensus 13 ~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~---~~~~~--------- 75 (571)
...+...| ++++|...|++..+ | +...+..|...|.+. |++++|+..|++..+ |+. ..|..
T Consensus 276 G~~~~~~g-~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSG-QGGKAIPELQQAVRANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45566777 99999999998765 4 567788888889999 999999999988754 221 12322
Q ss_pred ---HHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcC
Q 008280 76 ---MISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFG 146 (571)
Q Consensus 76 ---li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 146 (571)
+...+.+.|++++|+..|+++.+ .+...+..+...+...|++++|++.|++.. +.+...+..+...|. .+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 23467789999999999998854 355677888899999999999999999876 344566777777775 46
Q ss_pred CHHHHHHHHhhCCCCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCch
Q 008280 147 KVDLAEKLFDEMPTKN------------LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 214 (571)
Q Consensus 147 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 214 (571)
+.++|..+++.++... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 7899999998876421 1245567788889999999999999998863 22455677788889999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC----h---------hhHHHHHHHHHHcCChH
Q 008280 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD----V---------VTWNAMISGYAQHGKGE 281 (571)
Q Consensus 215 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~ 281 (571)
++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999998764 4455566666677788999999999999886421 1 11234567788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+|+.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.++..+..++.+|...|++++|++.++..
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999872 2345556777888999999999999999999873 3455888999999999999999999999987
Q ss_pred C-CCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc-----hhHHHHHHHHhhccChhHHHHHHHHHH-hCCC
Q 008280 362 P-FKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA-----GCYVQLANIYAAMKKWDDVARIRLSMK-ENNV 433 (571)
Q Consensus 362 ~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~ 433 (571)
. ..|+ ...+..+..++...|++++|...++++++..|+++. ..+..++.++...|++++|.+.++... ..|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 3 3344 567777888899999999999999999988765432 145567899999999999999998775 3444
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.8e-19 Score=204.08 Aligned_cols=410 Identities=15% Similarity=0.109 Sum_probs=246.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhCCC--CChhhHH-HHHHHHHcCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcC
Q 008280 10 NSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTMISGFVQK 83 (571)
Q Consensus 10 ~~l~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~ll~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~ 83 (571)
..+...+.+.| ++++|.+.|+++.+ |+..... ..........|+.++|++.|+++.. .+...+..+...+...
T Consensus 116 l~~A~ll~~~g-~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTG-RTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 34455778888 99999999998875 3222211 1112222223899999999998864 3556788889999999
Q ss_pred CCHHHHHHHHhhCCCCCc------ch-----------------HH----------------------------------H
Q 008280 84 KNMAKARDLFLAMPEKNS------VS-----------------WS----------------------------------A 106 (571)
Q Consensus 84 g~~~~A~~~~~~m~~~d~------~~-----------------~~----------------------------------~ 106 (571)
|+.++|+..|+++.+... .. +. .
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999987632110 00 00 1
Q ss_pred HHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCH---HHHHH----------
Q 008280 107 MISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNL---VTWNA---------- 168 (571)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~---------- 168 (571)
....+...|++++|+..|++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 1234556788888888887664 34567778888888888888888888877653 221 12222
Q ss_pred --HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 008280 169 --MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246 (571)
Q Consensus 169 --li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 246 (571)
+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 2345667888888888888887753 2345566667777788888888888888887754 333444444444442 2
Q ss_pred CCHHHHHHHHHhhCCCC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 008280 247 GDLEDACKLFLEIQRKD------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAG 313 (571)
Q Consensus 247 g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 313 (571)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. |+ ...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 33444444444332110 1122233344444555555555555554432 22 233344444555555
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHhH--------------------------------------------HHHHHHHHHcC
Q 008280 314 LVDLGIQYFDSMVNDYGIAAKPDHY--------------------------------------------TCMVDLLGRAG 349 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~li~~~~~~g 349 (571)
++++|...++.+.+.. +.++..+ ..+.+.+...|
T Consensus 510 ~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 510 QRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 5555555555544321 1111111 12234455556
Q ss_pred CHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 350 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 350 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+.++|+++++.-| ++...+..+...+...|++++|+..++++++.+|+++. ++..++.+|...|++++|.+.++...
T Consensus 588 ~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~-a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 588 KEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD-ARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666665432 33445566666777777777777777777777777776 77777777777777777777777655
Q ss_pred h
Q 008280 430 E 430 (571)
Q Consensus 430 ~ 430 (571)
+
T Consensus 665 ~ 665 (1157)
T PRK11447 665 A 665 (1157)
T ss_pred c
Confidence 4
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.6e-21 Score=184.03 Aligned_cols=356 Identities=12% Similarity=0.109 Sum_probs=309.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhH---HHHHHHHHH
Q 008280 70 TASWNTMISGFVQKKNMAKARDLFLAMPE--K-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA---WTAMISGYM 143 (571)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~ 143 (571)
..+|..+.+.+-..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|.+.+.-++.. .+.+.....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 45788899999999999999999999865 3 56799999999999999999999999887666533 344666777
Q ss_pred hcCCHHHHHHHHhhCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchHHHHH
Q 008280 144 KFGKVDLAEKLFDEMPT--KN-LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQLGKQ 219 (571)
Q Consensus 144 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~ 219 (571)
..|++.+|...+.+..+ |. .+.|+.|...+..+|+.-+|+..|++.... .|+ ...|..+...+...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 78999999999988765 43 368999999999999999999999999875 454 3578889999999999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008280 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296 (571)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
.|..+.... +....++..|...|-..|.++.|+..+++..+. -...|+.|..++-..|+..+|...+.+.... .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~ 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--C 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--C
Confidence 999888764 455677888889999999999999999998753 3578999999999999999999999998875 4
Q ss_pred CC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHH
Q 008280 297 PD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGT 372 (571)
Q Consensus 297 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ 372 (571)
|+ ..+.+.|...+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..|++. .++|+. ..++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 44 45788999999999999999999998875 4555 667889999999999999999999887 788885 78999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
+...|...|+.+.|.+.+.+++..+|.-.. ++..|+.+|-.+|++.+|+.-++...+....
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-AhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAE-AHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHH-HHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999988 9999999999999999999999988765544
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.7e-20 Score=187.12 Aligned_cols=292 Identities=11% Similarity=0.096 Sum_probs=208.8
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhccCch
Q 008280 141 GYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN---ASSLSSVLLGCSHLSSL 214 (571)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~ 214 (571)
.+...|++++|...|+++.+ .+..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666653 2334566666666666666666666666665321111 13445556666666677
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC--------hhhHHHHHHHHHHcCChHHHHHH
Q 008280 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD--------VVTWNAMISGYAQHGKGEKALRL 286 (571)
Q Consensus 215 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 286 (571)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776666543 3455666777777777777777777777765321 12355677778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC--hHhHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 008280 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHYTCMVDLLGRAGKLVEAVDLIKKM-PF 363 (571)
Q Consensus 287 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 363 (571)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99887653 223456777778888899999999999988753 333 456788889999999999999999887 34
Q ss_pred CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh---ccChhHHHHHHHHHHhCCCccCCce
Q 008280 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA---MKKWDDVARIRLSMKENNVVKMPGY 439 (571)
Q Consensus 364 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 439 (571)
.|+...+..++..+...|++++|...++++++..|+++ .+..+...+.. .|+.+++..++++|.++++.+.|.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 57777778888999999999999999999999999876 56666655553 5689999999999999999988864
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=7.4e-19 Score=187.12 Aligned_cols=251 Identities=14% Similarity=0.091 Sum_probs=205.6
Q ss_pred cCChhHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 008280 176 NSWAEDGLKLLRMMIGLG-IRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253 (571)
Q Consensus 176 ~g~~~~A~~~~~~m~~~g-~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 253 (571)
.+++++|++.|++....+ ..| +...+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999998764 234 34566777777788999999999999998874 444667888999999999999999
Q ss_pred HHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC
Q 008280 254 KLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330 (571)
Q Consensus 254 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 330 (571)
..|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99998754 467889999999999999999999999998753 234566777888999999999999999998863
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH--------hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP--------AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 331 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
.+.++..+..+..++...|++++|++.|++. ...|+. ..++..+..+...|++++|+..++++++++|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 4555888999999999999999999999886 333321 1122222334457999999999999999999998
Q ss_pred chhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 402 AGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 402 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
. .+..++.+|...|++++|.+.|++..+.
T Consensus 543 ~-a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 I-AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred H-HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7 8999999999999999999999987653
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=5.7e-19 Score=178.42 Aligned_cols=279 Identities=16% Similarity=0.157 Sum_probs=185.4
Q ss_pred HHHcCCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHHcCChHHHHHHHhhCCCCC-------hhHHHHHHHHHHhcCCH
Q 008280 79 GFVQKKNMAKARDLFLAMPE--K-NSVSWSAMISGYIECGQLDKAVELFKVAPVKS-------VVAWTAMISGYMKFGKV 148 (571)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~ 148 (571)
.+...|++++|+..|.++.+ | +..++..+...+...|++++|..+++.+.... ..++..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666543 2 23345555555555566666655555543211 12334444445555555
Q ss_pred HHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 008280 149 DLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225 (571)
Q Consensus 149 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 225 (571)
++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------------------------------- 168 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE----------------------------------- 168 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH-----------------------------------
Confidence 555555544433 233344444455555555555555554444
Q ss_pred hCCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008280 226 KSPLCKD----TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298 (571)
Q Consensus 226 ~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 298 (571)
+.+..+. ...+..++..+.+.|++++|...|+++.+ .+...+..++..|.+.|++++|.++|+++...+..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 4321111 11345577778888999999988888764 2456788888999999999999999999987543222
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHH
Q 008280 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSAC 377 (571)
Q Consensus 299 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 377 (571)
..++..+..++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 456788889999999999999999998763 567677788999999999999999999876 5568988998888876
Q ss_pred Hh---cCCHhHHHHHHHHHhc
Q 008280 378 RV---HKRLDLAEFAAMNLFN 395 (571)
Q Consensus 378 ~~---~g~~~~a~~~~~~~~~ 395 (571)
.. +|+.+++...++++++
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhccCCccchhHHHHHHHHHH
Confidence 64 5688899999988875
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=8.2e-18 Score=178.61 Aligned_cols=345 Identities=11% Similarity=0.038 Sum_probs=252.9
Q ss_pred CCHHHHHHHHhhCCCC------ChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHH
Q 008280 53 DDVVAAFDFFQRLPIK------DTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVEL 123 (571)
Q Consensus 53 g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~ 123 (571)
.+++.-.-.|...++. +..-..-++..+.+.|++++|+.+++.... .+...+..++.+....|++++|++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHH
Confidence 5555555555544431 222233456667788888888888887743 3455666777777788888888888
Q ss_pred HhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 008280 124 FKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN 197 (571)
Q Consensus 124 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 197 (571)
++++. +.+...+..+...+.+.|++++|...|++..+ .+...|..++..+...|++++|...++++.... |+
T Consensus 99 l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~ 176 (656)
T PRK15174 99 VNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PP 176 (656)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CC
Confidence 88775 44557788888888888999999888888764 345678888888899999999998888876643 33
Q ss_pred HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHH
Q 008280 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGY 274 (571)
Q Consensus 198 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 274 (571)
.......+..+...|++++|...++.+++....++......+...+.+.|++++|...|++..+ .+...+..+...|
T Consensus 177 ~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 177 RGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAY 256 (656)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3222222334677889999988888887764333444455567788889999999999888764 3567788888889
Q ss_pred HHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCC
Q 008280 275 AQHGKGEK----ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350 (571)
Q Consensus 275 ~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 350 (571)
...|++++ |+..|++..... +.+...+..+...+...|++++|...+++..+. -+.+...+..+..+|.+.|+
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 99998885 788898888753 224557778888899999999999999988763 23346677788889999999
Q ss_pred HHHHHHHHHhC-CCCCCHhH-HHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 351 LVEAVDLIKKM-PFKPQPAI-FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 351 ~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+++|++.|+++ ...|+... +..+..++...|+.++|...|+++++..|++..
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 99999999887 23455433 344566788999999999999999999888654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.8e-17 Score=179.80 Aligned_cols=374 Identities=10% Similarity=0.038 Sum_probs=207.8
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhh
Q 008280 53 DDVVAAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKV 126 (571)
Q Consensus 53 g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~ 126 (571)
|+.++|++++.+... .+...+..+..++.+.|++++|..+|++..+ .+...+..++..+...|++++|+..+++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666555432 2223355555566666666666666665421 2334455555555666666666666555
Q ss_pred CC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--
Q 008280 127 AP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA-- 198 (571)
Q Consensus 127 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-- 198 (571)
.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|++.+++... .|+.
T Consensus 109 ~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 109 LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 43 22334 55555566666666666666655543 2 333444555555555666666655554332 2221
Q ss_pred ----hHHHHHHHHH-----hccCch---HHHHHHHHHHHhC-CCCCCcc-hH-HH---HHHHHHhcCCHHHHHHHHHhhC
Q 008280 199 ----SSLSSVLLGC-----SHLSSL---QLGKQVHQLVFKS-PLCKDTT-AL-TP---LISMYCKCGDLEDACKLFLEIQ 260 (571)
Q Consensus 199 ----~t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~-~~---li~~y~~~g~~~~A~~~~~~~~ 260 (571)
.....++... ...+.+ ++|...++.+++. ...|+.. .+ .. .+.++...|++++|+..|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 0011111111 111122 4555566655543 1122211 11 01 1223345577777777777766
Q ss_pred CCC--hh--hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC---
Q 008280 261 RKD--VV--TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---DSITFVALLLACNHAGLVDLGIQYFDSMVNDYG--- 330 (571)
Q Consensus 261 ~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--- 330 (571)
+.+ .. .-..+...|...|++++|+.+|+++....... .......+..++...|++++|.++++.+.....
T Consensus 265 ~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 265 AEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 432 11 11224556777777777777777765532111 123344555566777777777777777664210
Q ss_pred -------CCCC---hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC
Q 008280 331 -------IAAK---PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 331 -------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 398 (571)
-.|+ ...+..+..++...|++++|+++++++ ... .+...+..+...+...|++++|+..++++++++|
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 0112 224455667777778888888887776 222 3356777777777788888888888888888888
Q ss_pred CCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 399 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
+++. .+..++..+...|++++|.++++.+.+.
T Consensus 425 d~~~-l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 425 RNIN-LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CChH-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8777 7777777778888888888888777654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=7.5e-17 Score=174.94 Aligned_cols=388 Identities=9% Similarity=-0.027 Sum_probs=297.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhC---CCCChhhHHHHHHHHHc
Q 008280 9 WNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRL---PIKDTASWNTMISGFVQ 82 (571)
Q Consensus 9 ~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m---~~~d~~~~~~li~~~~~ 82 (571)
..-.+......| +.++|.+++.+... .+...+..+...+... |++++|.++|++. ...+...+..+..++..
T Consensus 18 ~~d~~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344566667788 99999999998764 3344578888888888 9999999999994 34567778889999999
Q ss_pred CCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008280 83 KKNMAKARDLFLAMPE--K-NSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFD 156 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 156 (571)
.|++++|+..+++..+ | +.. +..+..++...|+.++|+..++++. +.+...+..+..++...+..+.|...++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999998854 3 455 8888899999999999999999875 4455677788889999999999999999
Q ss_pred hCCCCCHH--------HHHHHHHHHHH-----cCCh---hHHHHHHHHHHHC-CCCCCHh-HHHH----HHHHHhccCch
Q 008280 157 EMPTKNLV--------TWNAMIAGYVE-----NSWA---EDGLKLLRMMIGL-GIRPNAS-SLSS----VLLGCSHLSSL 214 (571)
Q Consensus 157 ~~~~~~~~--------~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-g~~pd~~-t~~~----ll~~~~~~~~~ 214 (571)
.... ++. ....++..+.. .+++ ++|++.++.+.+. ...|+.. .+.. .+.++...|+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 8876 211 22222332221 2234 7789999988864 2233321 1211 13445677999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC-------hhhHHHHHHHHHHcCChHHHHHHH
Q 008280 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD-------VVTWNAMISGYAQHGKGEKALRLF 287 (571)
Q Consensus 215 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~ 287 (571)
++|+..|+.+.+.+.+........+...|...|++++|+..|+++.+.+ ...+..+..++.+.|++++|..++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999987632111223336789999999999999999886432 234666777889999999999999
Q ss_pred HHHHHcCC-----------CCCH---HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 008280 288 DKMKDEGM-----------KPDS---ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 288 ~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 353 (571)
+++..... .|+. ..+..+...+...|+.++|...++++.. ..+.+...+..++.++...|++++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99987521 1332 2445667788899999999999999986 345668899999999999999999
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 354 AVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 354 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
|++.+++. ...|+ ...+..++..+...|++++|+..++++++..|+++.
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999988 44566 567777777889999999999999999999999974
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.7e-17 Score=176.29 Aligned_cols=347 Identities=10% Similarity=0.003 Sum_probs=278.8
Q ss_pred HHcCCCHHHHHHHHhhCCC------CCcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHH
Q 008280 80 FVQKKNMAKARDLFLAMPE------KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDL 150 (571)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 150 (571)
+.+..+++.-.-+|..-++ .+......++..+.+.|++++|..+++... +.+......++......|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3456677766666666553 234456667888999999999999998774 4455677777788888999999
Q ss_pred HHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC
Q 008280 151 AEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227 (571)
Q Consensus 151 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (571)
|...|+++.. .+...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|+.++|...+..+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999875 355689999999999999999999999998752 334567788888899999999999999988776
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008280 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 303 (571)
Q Consensus 228 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 303 (571)
. +.+...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|++..... +.+...+.
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 5 2333344334 3478899999999999987653 23344556778899999999999999998764 33456777
Q ss_pred HHHHHHHhcCcHHH----HHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHH
Q 008280 304 ALLLACNHAGLVDL----GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSAC 377 (571)
Q Consensus 304 ~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 377 (571)
.+..++...|++++ |...|++..+. .+.+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999986 89999998863 3445778999999999999999999999887 33344 56778888999
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
...|++++|+..++++++.+|+++. .+..++.++...|++++|...++...+...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~-~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSK-WNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999876 677788999999999999999998876543
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=4.5e-16 Score=169.18 Aligned_cols=418 Identities=13% Similarity=0.107 Sum_probs=298.5
Q ss_pred CCcchHHHH-HHHHHhCCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 008280 4 KTTVNWNSV-LAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79 (571)
Q Consensus 4 ~~~~~~~~l-~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~ 79 (571)
|+..+.... .+.|.+.+ ++++|.+++.++.+ | +..-+..|-..|....++ ++|..+++...+.|+..+..++..
T Consensus 179 ~~~~vL~L~~~rlY~~l~-dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~ 256 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLK-QWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATA 256 (987)
T ss_pred CCcHHHHHHHHHHHHHHh-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHH
Confidence 344444444 88888888 99999999988875 2 333355566677763255 888888776666788899999999
Q ss_pred HHcCCCHHHHHHHHhhCCC-----CCcchHH------------------------------HHHHHHHHcCChHHHHHHH
Q 008280 80 FVQKKNMAKARDLFLAMPE-----KNSVSWS------------------------------AMISGYIECGQLDKAVELF 124 (571)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~-----~d~~~~~------------------------------~li~~~~~~g~~~~A~~~~ 124 (571)
|.+.|+.++|.+++++++. |+..+|. .++..+.+.++++.+.++.
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999988852 2222221 1245556667777666653
Q ss_pred hhCC--------------------------------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----CHHHH
Q 008280 125 KVAP--------------------------------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--K----NLVTW 166 (571)
Q Consensus 125 ~~~~--------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~ 166 (571)
..-. +.+.....-+.-...+.|+.++|.++|+.... + +...-
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 2111 11222223333345667889999999887654 1 23344
Q ss_pred HHHHHHHHHcCC---hhHHHHH----------------------HHHHHH-CCC-CC--CHhHHHHHHHHHhccCchHHH
Q 008280 167 NAMIAGYVENSW---AEDGLKL----------------------LRMMIG-LGI-RP--NASSLSSVLLGCSHLSSLQLG 217 (571)
Q Consensus 167 ~~li~~~~~~g~---~~~A~~~----------------------~~~m~~-~g~-~p--d~~t~~~ll~~~~~~~~~~~a 217 (571)
+-++..|.+.+. ..+++.+ +..... .+. ++ +...+..+..++.. ++.++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 467777777765 3334333 111111 112 22 44555555555555 788889
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008280 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295 (571)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 295 (571)
...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.....
T Consensus 496 i~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~- 572 (987)
T PRK09782 496 LYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG- 572 (987)
T ss_pred HHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 99777777654 4444444455556789999999999998764 445567778888999999999999999998764
Q ss_pred CCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHH
Q 008280 296 KPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGT 372 (571)
Q Consensus 296 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 372 (571)
|+. ..+..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++|++.+++. ...|+ ...++.
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 443 3333444455567999999999999985 4677889999999999999999999999888 34454 567888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
+..++...|++++|+..++++++.+|+++. .+..++.+|...|++++|...+++..+..
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPA-LIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999998 99999999999999999999999987644
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2.2e-15 Score=160.52 Aligned_cols=414 Identities=12% Similarity=0.029 Sum_probs=293.4
Q ss_pred HHhCCCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHH-H--HHHHHcCCCHHHH
Q 008280 16 FAKQRGKLKDAQELFDKIPQ--PDVV-SYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT-M--ISGFVQKKNMAKA 89 (571)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~-l--i~~~~~~g~~~~A 89 (571)
..+.| +++.|+..|++..+ |+.. ....++..+... |+.++|+..+++...|+...+.. + ...|...|++++|
T Consensus 44 ~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34667 89999999988876 4431 233777777788 99999999999887764443333 3 4577778999999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHH--HHhcCCHHHHHHHHhhCCC--C-
Q 008280 90 RDLFLAMPE--K-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG--YMKFGKVDLAEKLFDEMPT--K- 161 (571)
Q Consensus 90 ~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~--~- 161 (571)
+++|+++.+ | |+..+..++..+...++.++|++.++++.+.++.....+..+ +...++..+|+..++++.+ |
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 999998864 3 456677778888889999999999988876555433334334 4445566568888888874 3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH------HHHHHHH---h--ccCc---hHHHHHHHHHHHhC
Q 008280 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL------SSVLLGC---S--HLSS---LQLGKQVHQLVFKS 227 (571)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~------~~ll~~~---~--~~~~---~~~a~~~~~~~~~~ 227 (571)
+...+..+..++.+.|-...|+++..+-... +.+...-. ...+..- . ...+ .+.|..-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 4567778888888889888888776542211 11111101 1111100 0 1112 34444555555542
Q ss_pred -C-CCCCcchH-HH---HHHHHHhcCCHHHHHHHHHhhCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC--
Q 008280 228 -P-LCKDTTAL-TP---LISMYCKCGDLEDACKLFLEIQRKD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-- 295 (571)
Q Consensus 228 -g-~~~~~~~~-~~---li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-- 295 (571)
+ .++....+ .+ .+-++.+.|+..++++.|+.+.... ..+--...++|...+++++|+.+|+++.....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 1 12222222 22 3456778899999999999998432 23556788999999999999999999866431
Q ss_pred ---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC----------CCCC---hHhHHHHHHHHHHcCCHHHHHHHHH
Q 008280 296 ---KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG----------IAAK---PDHYTCMVDLLGRAGKLVEAVDLIK 359 (571)
Q Consensus 296 ---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 359 (571)
.++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22333457889999999999999999999986311 0122 2345567888899999999999999
Q ss_pred hC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 360 KM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 360 ~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
++ ..+-|...+..+...+...|++.+|+..++.+..++|++.. +...++..+...|+|++|.++.+.+.+...
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~-~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI-LERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 88 22356788999999999999999999999999999999988 999999999999999999999988776443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=6.4e-15 Score=160.24 Aligned_cols=323 Identities=10% Similarity=0.025 Sum_probs=249.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCC---HHHHHHH------------------
Q 008280 102 VSWSAMISGYIECGQLDKAVELFKVAPVK------SVVAWTAMISGYMKFGK---VDLAEKL------------------ 154 (571)
Q Consensus 102 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~---~~~A~~~------------------ 154 (571)
...-.+.-...+.|+.++|.++|+...+. +....+-|+..|.+.+. ...|..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 33334444567789999999999888652 22355578888888776 3333222
Q ss_pred -------HhhCCC---C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHH
Q 008280 155 -------FDEMPT---K--NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222 (571)
Q Consensus 155 -------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (571)
+..... + +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 111111 2 56788888888877 8999999988887765 4776554445555678999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008280 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI---SGYAQHGKGEKALRLFDKMKDEGMKPDS 299 (571)
Q Consensus 223 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 299 (571)
.+... +|+...+..+...+.+.|+.++|...|++..+.++..++... ......|++++|+..|++..+. .|+.
T Consensus 534 ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~ 609 (987)
T PRK09782 534 KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSA 609 (987)
T ss_pred HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCH
Confidence 88665 444556677888999999999999999988765444333333 3334459999999999999875 5677
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC 377 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 377 (571)
..+..+..++.+.|++++|...+++..+. -+.+...+..+...+...|++++|++.+++. ...| +...+..+..++
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999863 3445778889999999999999999999987 3334 467899999999
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
...|++++|+..++++++++|++.. +....+....+..+++.|.+-+++--..++.
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~P~~a~-i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDIDNQAL-ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCch-hhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999988 8889999999999999998888766554443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=8.5e-16 Score=163.73 Aligned_cols=352 Identities=11% Similarity=0.013 Sum_probs=240.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCC--CCCcchHHHHHHHHHHcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC
Q 008280 73 WNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGK 147 (571)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 147 (571)
+......|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++..+. .+...+..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3345566777777777777777654 35666677777777777777777777766542 334566667777777777
Q ss_pred HHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-------------------------------C
Q 008280 148 VDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-------------------------------G 193 (571)
Q Consensus 148 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------------g 193 (571)
+++|...|..... .+......++..+.. ..+.......... .
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 7777766544321 111111111111100 0111111111110 0
Q ss_pred CCCCH-hHHHHHHHH---HhccCchHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--C-Ch
Q 008280 194 IRPNA-SSLSSVLLG---CSHLSSLQLGKQVHQLVFKSP--LCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DV 264 (571)
Q Consensus 194 ~~pd~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~ 264 (571)
..|+. ..+..+... ....+.+++|...++.+++.+ .+.....++.+...|...|++++|...|++..+ | +.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01100 001111000 123467889999999998865 233456788889999999999999999998764 3 35
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 344 (571)
.+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .+.+...+..+..+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 688889999999999999999999998753 335678888889999999999999999999862 34457778889999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHH-------HHHHhhc
Q 008280 345 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL-------ANIYAAM 415 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l-------~~~~~~~ 415 (571)
+.+.|++++|+..|++. ...| +...|+.+...+...|++++|+..|++++++.|+... .+..+ +..+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHh
Confidence 99999999999999987 3334 4678899999999999999999999999999987543 33221 2233457
Q ss_pred cChhHHHHHHHHHHhCC
Q 008280 416 KKWDDVARIRLSMKENN 432 (571)
Q Consensus 416 g~~~~a~~~~~~m~~~~ 432 (571)
|++++|.+++++..+..
T Consensus 522 ~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 522 QDFIEAENLCEKALIID 538 (615)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999877643
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2e-14 Score=153.37 Aligned_cols=380 Identities=12% Similarity=0.058 Sum_probs=278.1
Q ss_pred HHcCCCCHHHHHHHHhhCCCCChhh---HHHHHHHHHcCCCHHHHHHHHhhCCCCCcch-HHHH--HHHHHHcCChHHHH
Q 008280 48 ILLNSDDVVAAFDFFQRLPIKDTAS---WNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAM--ISGYIECGQLDKAV 121 (571)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~d~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~-~~~l--i~~~~~~g~~~~A~ 121 (571)
.++. |+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+... +..+ ...|...|++++|+
T Consensus 44 ~~r~-Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARA-GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhC-CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4677 99999999999988644432 3388888999999999999999998764443 3333 55788889999999
Q ss_pred HHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008280 122 ELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL--VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196 (571)
Q Consensus 122 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 196 (571)
++|+++. +.++.++..++..|...++.++|++.++++...+. ..+-.++..+...++..+|++.++++.... +-
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~ 201 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT 201 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence 9999886 34567778888999999999999999999986444 344333333434566667999999999874 33
Q ss_pred CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcch------HHHHHHH---HH--hcC---CHHHHHHHHHhhCC-
Q 008280 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA------LTPLISM---YC--KCG---DLEDACKLFLEIQR- 261 (571)
Q Consensus 197 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------~~~li~~---y~--~~g---~~~~A~~~~~~~~~- 261 (571)
+...+.....+..+.|-...|.++...-... +.+.... ...++.. .. ... -.+.|+.-++.+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 5666788888889999888888766542211 0111000 0011100 00 111 23445544555443
Q ss_pred --CCh---hhH----HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC--
Q 008280 262 --KDV---VTW----NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG-- 330 (571)
Q Consensus 262 --~~~---~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 330 (571)
+++ ..| --.+-++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..++..+....+
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 211 112 234567888999999999999999888654455778899999999999999999999876422
Q ss_pred --CCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCC--------------CCCH---hHHHHHHHHHHhcCCHhHHHHHHH
Q 008280 331 --IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF--------------KPQP---AIFGTLLSACRVHKRLDLAEFAAM 391 (571)
Q Consensus 331 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~ 391 (571)
.+++......|.-+|...+++++|..+++++.. .|+. .....++..+.-.|++.+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233454567899999999999999999998811 1222 234456677889999999999999
Q ss_pred HHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 392 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
+++...|.++. ....+++++...|...+|.+.++.....
T Consensus 441 ~l~~~aP~n~~-l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 441 DLSSTAPANQN-LRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999998 9999999999999999999999776654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9.9e-15 Score=149.12 Aligned_cols=427 Identities=12% Similarity=0.088 Sum_probs=311.9
Q ss_pred CCCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCCCC------hhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CC--hh
Q 008280 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD------VVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KD--TA 71 (571)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d--~~ 71 (571)
++.++.+.+.|.+.|.--| ++..+..+...+...+ ..+|-.+..+|-.. |++++|...|.+... +| +.
T Consensus 266 n~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccCCCCccc
Confidence 4567888888888888877 8988888887765422 23567778888888 999999999887654 23 33
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHHcC----ChHHHHHHHhhCC---CCChhHHHHHHHH
Q 008280 72 SWNTMISGFVQKKNMAKARDLFLAMPE--K-NSVSWSAMISGYIECG----QLDKAVELFKVAP---VKSVVAWTAMISG 141 (571)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g----~~~~A~~~~~~~~---~~~~~~~~~li~~ 141 (571)
.+--|..+|.+.|+++.|...|+...+ | +..+...|...|+..+ ..+.|..++.+.. +.|...|-.+..+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455678899999999999999998854 3 4567777777777765 5567777776665 3455677777777
Q ss_pred HHhcCCH------HHHHHHHhhC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHh------HHHHHH
Q 008280 142 YMKFGKV------DLAEKLFDEM-PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL---GIRPNAS------SLSSVL 205 (571)
Q Consensus 142 ~~~~g~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~------t~~~ll 205 (571)
|-...-+ ..|..++..- ....+...|.+...+...|++.+|...|.+.... ...+|.. +--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 7655443 3344333322 2356678899999999999999999999988764 2233331 222333
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHH
Q 008280 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEK 282 (571)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 282 (571)
...-..++.+.|.+.|..+++.. +.-+..|..|+-+....++..+|...++.... .++..|+.+...+....++..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 44456779999999999999864 33233344444444445677888888887763 578889888889999999999
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC
Q 008280 283 ALRLFDKMKDE-GMKPDSITFVALLLACNH------------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349 (571)
Q Consensus 283 A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 349 (571)
|.+-|+..... ...+|..+..+|.+.|.. .+..++|.++|.++++ ..+.+...-+.+.-.++..|
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhcc
Confidence 99877776543 234677777777776643 2456788889888876 45667788888889999999
Q ss_pred CHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc-cCCCCCchhHHHHHHHHhhccChhHHHHHHH
Q 008280 350 KLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN-LNPANAAGCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 350 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
++.+|..+|.+.. ......+|..+...|...|++..|++.|+..++ ..+.+.......|+.++.+.|++.+|.+...
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999882 223456899999999999999999999998876 3455444488899999999999999999887
Q ss_pred HHHhCCC
Q 008280 427 SMKENNV 433 (571)
Q Consensus 427 ~m~~~~~ 433 (571)
......+
T Consensus 741 ~a~~~~p 747 (1018)
T KOG2002|consen 741 KARHLAP 747 (1018)
T ss_pred HHHHhCC
Confidence 6665443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.6e-15 Score=140.62 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=165.5
Q ss_pred ccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHcCChHHHHHH
Q 008280 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRL 286 (571)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 286 (571)
..|++++|...|.+.+...-.... ....+.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...++.+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~e-alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTE-ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHH-HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 458899999999888865422222 22234556778899999999998765 46777888888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 008280 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP 365 (571)
Q Consensus 287 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 365 (571)
+.+.... ++.|+..+..|...|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|+.+|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8776543 455667788888999999999999888755433 46777888888999999999999999999988 4789
Q ss_pred CHhHHHHHHHHH-HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccCh
Q 008280 366 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418 (571)
Q Consensus 366 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 418 (571)
+..-|..++..| ++.|++.+|..+++..-...|.+.. .+..|..++...|..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld-clkflvri~~dlgl~ 710 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD-CLKFLVRIAGDLGLK 710 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH-HHHHHHHHhccccch
Confidence 999999998876 7899999999999999999999988 888999999888853
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=8e-14 Score=142.60 Aligned_cols=412 Identities=14% Similarity=0.108 Sum_probs=293.6
Q ss_pred HHHHhCCCCHHHHHHHHhhCCCCChhhHHHHHHHHH-----cCCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCC
Q 008280 14 AGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKN 85 (571)
Q Consensus 14 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-----~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~ 85 (571)
-++.+++ +.+.|+..|....+.|+...++++.-.. .....+..+..++.... ..|+++.+.|.+.|.-.|+
T Consensus 207 ~Cf~kl~-~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLG-MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhcc-chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 3445666 7777777777777655544444443211 11123445555555432 3588899999999999999
Q ss_pred HHHHHHHHhhCCCCC------cchHHHHHHHHHHcCChHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 008280 86 MAKARDLFLAMPEKN------SVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGKVDLAEKLF 155 (571)
Q Consensus 86 ~~~A~~~~~~m~~~d------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 155 (571)
++.+..+...+.... ..+|-.+..+|-..|++++|...|-+....+ +..+..|..+|.+.|+++.|...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 999999988875432 3468889999999999999999997765332 345667899999999999999999
Q ss_pred hhCCC--C-CHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHH----
Q 008280 156 DEMPT--K-NLVTWNAMIAGYVENS----WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV---- 224 (571)
Q Consensus 156 ~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~---- 224 (571)
+.+.. | +..+...|...|+..+ ..+.|..++.+....- +.|...|..+...+-. ++...+..++..+
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHH
Confidence 99874 3 4467777777787775 4566666666665542 3456666666655543 3333335555443
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC-------Ch------hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008280 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-------DV------VTWNAMISGYAQHGKGEKALRLFDKMK 291 (571)
Q Consensus 225 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 291 (571)
...+-++.+.+.|.+...+...|++++|...|+..... |. .+--.+...+-..++.+.|.+.|....
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555677889999999999999999999999876532 22 122335556667788999999999988
Q ss_pred HcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC
Q 008280 292 DEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ 366 (571)
Q Consensus 292 ~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~ 366 (571)
.. .|+.+ .|..++......+...+|...++.... ....++..++.+...+.+...+..|.+-|+.. ...+|
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 75 46655 455555444456788889888888876 55667777777888888888888887744443 34477
Q ss_pred HhHHHHHHHHHHh------------cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 367 PAIFGTLLSACRV------------HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 367 ~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
+.+..+|.+.|.. .+..++|++.|.+++..+|.|.- +-..++-+++..|++.+|..+|.++++...
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y-AANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY-AANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh-hccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 7777778776642 34578888999999999998866 667888889999999999999999887655
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.2e-15 Score=146.27 Aligned_cols=256 Identities=17% Similarity=0.163 Sum_probs=112.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 008280 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS-VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246 (571)
Q Consensus 168 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 246 (571)
.+...+.+.|++++|++++++......+|+...|.. +...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 346667777888888888765444322344444443 3334456778888888888887765 3356667777777 688
Q ss_pred CCHHHHHHHHHhhCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 008280 247 GDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFD 323 (571)
Q Consensus 247 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 323 (571)
+++++|.++++..-+ ++...+..++..+...++++++..++++..... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876643 466778888889999999999999999977543 34566677788888999999999999999
Q ss_pred HhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC
Q 008280 324 SMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 400 (571)
+..+. .| +......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+.+|++
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99874 45 5778889999999999999988777666 123566788999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 401 AAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 401 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+. ....+++++...|+.++|.+++++..
T Consensus 248 ~~-~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PL-WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HH-HHHHHHHHHT----------------
T ss_pred cc-cccccccccccccccccccccccccc
Confidence 98 99999999999999999999987653
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=1e-11 Score=121.94 Aligned_cols=421 Identities=13% Similarity=0.120 Sum_probs=310.6
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC---------------------
Q 008280 12 VLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--------------------- 67 (571)
Q Consensus 12 l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--------------------- 67 (571)
|.-+|++.. .++.|++++.+..+ .+...|.+-...=-.+ |..+...++.++-..
T Consensus 412 LwlAlarLe-tYenAkkvLNkaRe~iptd~~IWitaa~LEE~n-gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLE-TYENAKKVLNKAREIIPTDREIWITAAKLEEAN-GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 455667777 78888888877654 4566665544433455 666666666654320
Q ss_pred ------------------------CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHH
Q 008280 68 ------------------------KDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKA 120 (571)
Q Consensus 68 ------------------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A 120 (571)
.-..+|+.-...|.+.+.++-|..+|....+ .+...|......--..|..++-
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 0123566666667777777777777776654 3455676666666666777777
Q ss_pred HHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 008280 121 VELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194 (571)
Q Consensus 121 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 194 (571)
..+|++.. +.....|-....-+-..|++..|+.++.+..+ .+...|-+-+..-..+.++++|..+|.+....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 77777664 34456677777777788888888888877654 24567888888888888889998888887764
Q ss_pred CCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHH
Q 008280 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMI 271 (571)
Q Consensus 195 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 271 (571)
.|+...|..-+..---.+..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+ ..+..|-.+.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 455555555555555567888888888888776 355566788888888888888888888876554 2456788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCH
Q 008280 272 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351 (571)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 351 (571)
..--+.|..-.|..+|++.+..+ +-|...|...+..-.+.|+.++|..+..+.++ ..+.+...|..-|.+..+.++-
T Consensus 727 kleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccc
Confidence 77778888888999998887665 33667788888888889999999888888877 4566777888888888888887
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 352 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
..+.+.+++.. .|+.+..++...+....+++.|..-|.++++.+|++-. +|..+...+...|.-++-.++++.....
T Consensus 804 Tks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD-~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 804 TKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD-AWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred hHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch-HHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 77777777763 56777778888888999999999999999999999988 9999999999999999988888877653
Q ss_pred CCccCCceeEEEEC
Q 008280 432 NVVKMPGYSWIEVG 445 (571)
Q Consensus 432 ~~~~~~~~s~~~~~ 445 (571)
. |..|..|..+.
T Consensus 881 E--P~hG~~W~avS 892 (913)
T KOG0495|consen 881 E--PTHGELWQAVS 892 (913)
T ss_pred C--CCCCcHHHHHh
Confidence 2 34566776543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=2.6e-12 Score=130.94 Aligned_cols=348 Identities=13% Similarity=0.174 Sum_probs=210.4
Q ss_pred CCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHh---hCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008280 83 KKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFK---VAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 156 (571)
.|++++|.+++.++.+ .+...|.+|...|-+.|+.+++...+- .+.+.|...|..+.+...+.|.++.|.-.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3778888888777754 245677777778888887777776542 3446666777777777777777888777777
Q ss_pred hCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH----HHHHHhccCchHHHHHHHHHHHhCC-
Q 008280 157 EMPTKNL---VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS----VLLGCSHLSSLQLGKQVHQLVFKSP- 228 (571)
Q Consensus 157 ~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~g- 228 (571)
+..+.++ ...---+..|-+.|+...|.+-|.++.....+.|..-+.. ++..+...++-+.|.+.+......+
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 7765333 2333345667777777777777777776532112211222 2233333444455555444444321
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 304 (571)
-..+...++.++.+|.+...++.|......+.. +|..-|.+- ..++. +-..++. ...++.++...+ -
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-~~~~~~~--~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-EPNALCE--VGKELSYDLRVI-R 382 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-ccccccc--CCCCCCccchhH-h
Confidence 122333444555555555555555444433322 121111000 00000 0000000 001122222221 1
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcC--CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHh
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRV 379 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 379 (571)
+.-+..+....+...-+...+... . ..-++..|.-+.++|...|++.+|+++|..+ +...+...|--+...|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 222233344434333344444432 4 3334778999999999999999999999988 223457899999999999
Q ss_pred cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeE
Q 008280 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441 (571)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 441 (571)
.|.+++|.+.+++++.+.|++.. +-..|+.+|.+.|+.++|.+.+..|..-+....+++.|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D-~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLD-ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchh-hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999 99999999999999999999999887444333455555
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.9e-12 Score=128.54 Aligned_cols=274 Identities=12% Similarity=0.063 Sum_probs=184.5
Q ss_pred cCCHHHHHHHHhhCCCC--CHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHhccCchHHHHH
Q 008280 145 FGKVDLAEKLFDEMPTK--NLVTWNAM-IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQ 219 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~ 219 (571)
.|+++.|++.+...++. ++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 22333223 34446778888888888877653 45543332 22445667788888888
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCCh-----------hhHHHHHHHHHHcCChHHHHHHHH
Q 008280 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----------VTWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877766 55677777788888888888888888877764321 133333333334444555556666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 008280 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ- 366 (571)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 366 (571)
.+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++......++.+++++..++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 55332 2345667777888888888888888888877652 4554322 222233458888888888776 33344
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+....++...|...+++++|...|+++++..|++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY--DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55677888888899999999999999998888875 67889999999999999988887553
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.8e-11 Score=112.95 Aligned_cols=327 Identities=14% Similarity=0.099 Sum_probs=244.4
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHH-HHHHHHHHcC
Q 008280 99 KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN-AMIAGYVENS 177 (571)
Q Consensus 99 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g 177 (571)
.|...+-.....+.+.|..+.|+..|......-+..|.+.+....-.-+.+.+..+....+..+...-. -+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 355455555556677888888998888877666777777766666666777776666555554322211 2345666667
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHH-HHH
Q 008280 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL--CKDTTALTPLISMYCKCGDLED-ACK 254 (571)
Q Consensus 178 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~-A~~ 254 (571)
+.++++.-.......|++-+...-+....+.-...++++|+.+|+.+++... -.|..+|+.++-.--.+..+.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 8888888888888888655555555555556678899999999999998741 1245566665543333222222 222
Q ss_pred HHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC
Q 008280 255 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334 (571)
Q Consensus 255 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 334 (571)
++ .+.+--+.|...+.+-|...++.++|...|++..+.+. .....|+.+..-|....+...|.+-++..++ -.+.|
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~D 397 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRD 397 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchh
Confidence 22 23333466777788889999999999999999988642 2345677788899999999999999999986 34567
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|++++..+-.+.. .+..|+.+|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~-~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS-ALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH-HHHHHHHHH
Confidence 889999999999999999999999988 3444 5799999999999999999999999999998777666 999999999
Q ss_pred hhccChhHHHHHHHHHHh
Q 008280 413 AAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~ 430 (571)
.+.++.++|...|++-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999987664
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.6e-11 Score=115.47 Aligned_cols=213 Identities=15% Similarity=0.143 Sum_probs=174.9
Q ss_pred ccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHH
Q 008280 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRL 286 (571)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 286 (571)
-.|+.-.+..-++.+++.. +.+...|--+..+|....+.++..+.|+...+ .|+.+|..-...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4578888888999888876 33444577788899999999999999998764 4677888888888889999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 008280 287 FDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK 364 (571)
Q Consensus 287 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 364 (571)
|++.+.. .| +...|..+..+..+.+.++++...|++.++ .++..+++|+.....+...+++++|.+.|+.. ...
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999875 44 445777787788889999999999999988 46777999999999999999999999999876 222
Q ss_pred CC---------HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 365 PQ---------PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 365 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
|+ +.+-.+++..- =.+++..|+.+++++++++|.... +|..|+..-.+.|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~-A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQ-AYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 32 22222333222 238999999999999999999988 99999999999999999999998653
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2e-10 Score=107.72 Aligned_cols=410 Identities=19% Similarity=0.185 Sum_probs=267.7
Q ss_pred CcchHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhh----HHHH--HHHHHcCCCCHHHHHHHHhhCCC---CChhhHHH
Q 008280 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVS----YNIM--LSCILLNSDDVVAAFDFFQRLPI---KDTASWNT 75 (571)
Q Consensus 5 ~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~l--l~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~ 75 (571)
.+.+-|.|+++.+. | .+.++.-+++.|.+.++.. --.| +..|..+.+-+-.-.+.|-.|.. .+..+|
T Consensus 115 ~V~~E~nL~kmIS~-~-EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKMISS-R-EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHHHhh-c-ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--
Confidence 34566777776554 3 6777777777776533221 1111 11233331222222344555543 333444
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHH
Q 008280 76 MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLA 151 (571)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 151 (571)
+.|.+.+ ++-+...+...++..||.+.++--..+.|.+++++.. +.+..++|.+|.+-+-...
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---- 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---- 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----
Confidence 3354433 4444444567899999999999999999999998775 3456778888765443333
Q ss_pred HHHHhhCC----CCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHH-HHHHHH
Q 008280 152 EKLFDEMP----TKNLVTWNAMIAGYVENSWAED----GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVHQ 222 (571)
Q Consensus 152 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-a~~~~~ 222 (571)
.++..+|. .||..|+|+++++..+.|+++. |++++.+|++.|+.|...+|..++....+.++..+ +..+..
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 55666665 5999999999999999998865 45678899999999999999999998888877644 444444
Q ss_pred HHHh----CCCC----CCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC-----------ChhhHHHHHHHHHHcCChHHH
Q 008280 223 LVFK----SPLC----KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-----------DVVTWNAMISGYAQHGKGEKA 283 (571)
Q Consensus 223 ~~~~----~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A 283 (571)
.+.. ..+. .|...+...++.+.+..+.+-|.++-.-+... ...-|..+....++....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 2233 34555667778888889999998887665532 123456677778888889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC-CH--------HH-
Q 008280 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG-KL--------VE- 353 (571)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~- 353 (571)
+..|+.|.-.-.-|+..+...+++|..-.|.++-..+++..++. +|.........-+...+++.. +. ..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 99999998877889999999999999999998888888887765 354444444444444444433 11 10
Q ss_pred ----HHHHHH-------hC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC---CCCCchhHH---HHHHHHhhc
Q 008280 354 ----AVDLIK-------KM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN---PANAAGCYV---QLANIYAAM 415 (571)
Q Consensus 354 ----A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~---~l~~~~~~~ 415 (571)
|..+++ ++ ..+......+..+-.+.+.|..++|-+++....+.+ |..+ ... .|.+.-...
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p--~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP--LLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc--chhhHHHHHHHHHhc
Confidence 111111 11 122334556666666788899999998888875532 4444 334 334444456
Q ss_pred cChhHHHHHHHHHHhCCCc
Q 008280 416 KKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 416 g~~~~a~~~~~~m~~~~~~ 434 (571)
....+|..+++-|...+..
T Consensus 575 ~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCHHHHHHHHHHHHHcCch
Confidence 6777788888888765554
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-10 Score=109.57 Aligned_cols=353 Identities=14% Similarity=0.100 Sum_probs=253.4
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCCh-hHHHHHHHHHHhcC
Q 008280 68 KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV-VAWTAMISGYMKFG 146 (571)
Q Consensus 68 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g 146 (571)
.|.+..-...-.+-+.|..+.|+..|......-+..|.+-+....-.-+.+.+..+...+...+. ..---+..+|-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 35544444445566788999999999888766666676666554444455544443333332211 11223445566666
Q ss_pred CHHHHHHHHhhCCC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhccCchH-HHHH
Q 008280 147 KVDLAEKLFDEMPT---K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI--RPNASSLSSVLLGCSHLSSLQ-LGKQ 219 (571)
Q Consensus 147 ~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~~~~~~~~~~-~a~~ 219 (571)
+.+++..-.+.... + +...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.-.....+. .|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 77777665555443 2 233334444556677899999999999998631 126678888775543322221 1111
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008280 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296 (571)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
++ .+- +--+.++..+.+-|+-.++.++|...|++..+ +....|+.|..-|....+...|++-++...+-+ +
T Consensus 322 v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 322 VS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 11 111 23456777888999999999999999998875 346789999999999999999999999998864 4
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 008280 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLL 374 (571)
Q Consensus 297 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 374 (571)
-|...|..|.++|.-.+...-|+-+|++..+ --+.|...|.+|.+.|.+.+++++|++.|.+. .-+.+...+..|.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4778999999999999999999999999875 34556899999999999999999999999988 2123457899999
Q ss_pred HHHHhcCCHhHHHHHHHHHhc-------cCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 375 SACRVHKRLDLAEFAAMNLFN-------LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
..|-+.++.++|...+++-++ .+|+-.. +..-|+.-+.+.+++++|..+-....
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k-a~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK-ARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH-HHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999999999999999998876 3444333 56678888999999999987665443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=7.1e-12 Score=125.77 Aligned_cols=281 Identities=12% Similarity=0.050 Sum_probs=173.1
Q ss_pred CCCHHHHHHHHhhCCCC--Ccch-HHHHHHHHHHcCChHHHHHHHhhCCCCC--hhHHH--HHHHHHHhcCCHHHHHHHH
Q 008280 83 KKNMAKARDLFLAMPEK--NSVS-WSAMISGYIECGQLDKAVELFKVAPVKS--VVAWT--AMISGYMKFGKVDLAEKLF 155 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~~--d~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~--~li~~~~~~g~~~~A~~~~ 155 (571)
.|+++.|.+.+....+. ++.. +.....+..+.|+++.|.+.+.++.+.+ ..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666666554332 1222 2222233355666666666665554322 11111 2244555666666666666
Q ss_pred hhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCC
Q 008280 156 DEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232 (571)
Q Consensus 156 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 232 (571)
+++.+ .++.....+...|.+.|++++|++++..+.+.+..+ ......+-
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~--------------------------- 228 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE--------------------------- 228 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH---------------------------
Confidence 65543 234455556666666666666666666666544321 11111000
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
..++..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. .|+... .++.+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~ 304 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPR 304 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhh
Confidence 01222233333334455666666666653 46777888888888889999999888888763 445422 123344
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
...++.+++.+..+...++ .+-|+..+.++..++.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|..
T Consensus 305 l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4558888888888888764 4555777888889999999999999999887 566888888888888999999999999
Q ss_pred HHHHHhccC
Q 008280 389 AAMNLFNLN 397 (571)
Q Consensus 389 ~~~~~~~~~ 397 (571)
++++.+.+-
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 998887643
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.5e-11 Score=112.26 Aligned_cols=382 Identities=12% Similarity=0.160 Sum_probs=287.3
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHHcCChHHHHHHHhh
Q 008280 53 DDVVAAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMPE--KN-SVSWSAMISGYIECGQLDKAVELFKV 126 (571)
Q Consensus 53 g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~~~~~ 126 (571)
++...|+++|++... .+...|--.+.+=.++..+..|..+|+.... |- ...|-..+-.--..|+...|.++|+.
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 778889999998775 5677888888999999999999999998753 32 23566666666678999999999987
Q ss_pred CC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 008280 127 AP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMP--TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202 (571)
Q Consensus 127 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 202 (571)
.. +|+...|++.|+.=.+-+.++.|+.++++.. .|++.+|--....=.+.|+...|..+|....+. -.|...--
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e 244 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAE 244 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHH
Confidence 64 7888999999999999999999999999865 689999988888888999999999999887763 12333333
Q ss_pred HHHHHH----hccCchHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCCHHHHHHH--------HHhhCCC---Chh
Q 008280 203 SVLLGC----SHLSSLQLGKQVHQLVFKSPLCKD--TTALTPLISMYCKCGDLEDACKL--------FLEIQRK---DVV 265 (571)
Q Consensus 203 ~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~--------~~~~~~~---~~~ 265 (571)
.+..++ .+...++.|..+|..++..= +.+ ...|..+...=-+-|+.....+. ++.+... |..
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 333333 45667888999999888763 333 44566666665666776554443 2333332 556
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HhcCcHHHHHHHHHHhHHhcCCCCCh
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI-------TFVALLLAC---NHAGLVDLGIQYFDSMVNDYGIAAKP 335 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 335 (571)
+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.+.++|+..++ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 7777777777889999999999998864 566331 222222222 356788999999998886 455566
Q ss_pred HhHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHH
Q 008280 336 DHYTCMVDLL----GRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410 (571)
Q Consensus 336 ~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~ 410 (571)
.++.-+--+| .|+.++..|.+++... |.-|...++...|..-.+.++++....++++.++.+|.+.. ++...+.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~-~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY-AWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH-HHHHHHH
Confidence 6655544444 5788999999998766 77788888988888888999999999999999999999988 8999999
Q ss_pred HHhhccChhHHHHHHHHHHhCCCccCCceeE
Q 008280 411 IYAAMKKWDDVARIRLSMKENNVVKMPGYSW 441 (571)
Q Consensus 411 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 441 (571)
.-...|+++.|..+|+-..+......|..-|
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 8899999999999999888766555555544
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=4e-12 Score=119.53 Aligned_cols=255 Identities=13% Similarity=0.098 Sum_probs=185.2
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 008280 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249 (571)
Q Consensus 172 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 249 (571)
.|.++|+++.|+++++-..+..-+.-...-+ .++.......++..|.++-+..+... .-+......-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4678889999988888776543222222222 22222233446777777777666543 22222222223334457999
Q ss_pred HHHHHHHHhhCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 008280 250 EDACKLFLEIQRKDVVTWNAMI---SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 250 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 326 (571)
++|...|++....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999887766544443 3467789999999999887543 23466677888899999999999999998876
Q ss_pred HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchh
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK-MP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 404 (571)
. -++.|+...+-|.+.|-+.|+-.+|.+.+-+ .. ++-+..+..-|..-|....-.++++..|+++--+.|+... .
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k-w 662 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK-W 662 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH-H
Confidence 4 5677899999999999999999999987543 32 2345566666777788888899999999999999998875 5
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 405 YVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
...++.++.+.|++..|..+++....+
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 556677778999999999999988654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.1e-12 Score=127.61 Aligned_cols=276 Identities=13% Similarity=0.065 Sum_probs=217.6
Q ss_pred CCHHHHHHHHhhCCC--CCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhccCchHHHHHH
Q 008280 146 GKVDLAEKLFDEMPT--KNLV-TWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQV 220 (571)
Q Consensus 146 g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~ 220 (571)
-+..+|...|..+++ +|.. ....+..+|...+++++|.++|+.+.+.. ..-+..+|++.+--+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356889999999764 4443 44567889999999999999999998742 122566788877655432 22222
Q ss_pred HH-HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008280 221 HQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296 (571)
Q Consensus 221 ~~-~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
+. .+++. -+..+.+|.++.+.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 22332 2567899999999999999999999999998864 457888888888899999999999998875 34
Q ss_pred CCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHH
Q 008280 297 PDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGT 372 (571)
Q Consensus 297 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ 372 (571)
|.. -.|..+...|.+.++++.|.-.|+...+ +.|. .....++...+-+.|+.++|+++++++ ... .|+..---
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 444 4777888999999999999999998874 4554 667778889999999999999999998 222 34444444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
.+..+...+++++|+..++++.++-|++.. +|..++.+|-+.|+.+.|..-|--+.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~-v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESS-VFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHH-HHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 566677899999999999999999999998 99999999999999999998887665533
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.8e-10 Score=111.88 Aligned_cols=402 Identities=14% Similarity=0.081 Sum_probs=283.7
Q ss_pred CHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCCHHHHHHHHhh--CCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 008280 22 KLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDFFQR--LPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97 (571)
Q Consensus 22 ~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~g~~~~A~~~~~~--m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 97 (571)
++.-|.-+-+++.. .|+...--+...+.-. |+.+.|..+... +...|.........++.+..++++|+.++....
T Consensus 31 ~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~-~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~ 109 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLTNDPADIYWLAQVLYLG-RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGH 109 (611)
T ss_pred hhhHHHHHHHHHHhccCChHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444444444422 4444444566667777 888888877654 567888888888999999999999999998321
Q ss_pred ----C-----CC-------cchH----HH--------HHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHh-----
Q 008280 98 ----E-----KN-------SVSW----SA--------MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK----- 144 (571)
Q Consensus 98 ----~-----~d-------~~~~----~~--------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----- 144 (571)
. .| ...+ .. -...|....+.++|...|.+....|+..+.++...-..
T Consensus 110 ~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~ 189 (611)
T KOG1173|consen 110 VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA 189 (611)
T ss_pred hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch
Confidence 0 11 0011 00 11345666778888888887775555444333221111
Q ss_pred ---------------c-CCHHHHHHHHhhC----C----------------CCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008280 145 ---------------F-GKVDLAEKLFDEM----P----------------TKNLVTWNAMIAGYVENSWAEDGLKLLRM 188 (571)
Q Consensus 145 ---------------~-g~~~~A~~~~~~~----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 188 (571)
+ .+.+.-+.+|+-. . +.|+.....-..-+...+++.+..+++..
T Consensus 190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ 269 (611)
T KOG1173|consen 190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEE 269 (611)
T ss_pred hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHH
Confidence 0 0111112222211 0 12344445555667788999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC---hh
Q 008280 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD---VV 265 (571)
Q Consensus 189 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~ 265 (571)
..+.. ++....+..=|..+...|+..+-.-+=..+++. .|....+|-++.--|.-.|+..+|++.|.+...-| ..
T Consensus 270 lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 270 LLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 88753 455555555555667777766665555566655 36778899999999999999999999999876543 46
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 345 (571)
.|-.....|+-.|..++|+..+...-+. ++-....+.-+..-|.+.++.+.|.++|.+... -.+.|+...+-+.-+.
T Consensus 348 aWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 348 AWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVA 424 (611)
T ss_pred HHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhee
Confidence 8999999999999999999998887553 222233344455678889999999999998874 2344577788888778
Q ss_pred HHcCCHHHHHHHHHhC--------CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 346 GRAGKLVEAVDLIKKM--------PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
...+.+.+|...|+.. +..+ -..+++.|..+|++.+.+++|+..+++++.+.|.++. +|..++-+|...|
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~-~~asig~iy~llg 503 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS-THASIGYIYHLLG 503 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHhc
Confidence 8889999999999876 1111 2356888999999999999999999999999999999 9999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 008280 417 KWDDVARIRLSMKE 430 (571)
Q Consensus 417 ~~~~a~~~~~~m~~ 430 (571)
+++.|...|.+...
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999987653
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=6.5e-11 Score=119.51 Aligned_cols=129 Identities=11% Similarity=0.001 Sum_probs=62.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT--F-VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 339 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (571)
+...+..++..+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+...-.|+.....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 55666666666666666666666666666532 33321 0 1111111223445555555555444211111113344
Q ss_pred HHHHHHHHcCCHHHHHHHHHh--C-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 340 CMVDLLGRAGKLVEAVDLIKK--M-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555552 1 33455554555555555555555555555544
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.7e-13 Score=131.26 Aligned_cols=250 Identities=16% Similarity=0.168 Sum_probs=92.4
Q ss_pred HHHHHHHcCCCHHHHHHHHhhC-C----CCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcC
Q 008280 75 TMISGFVQKKNMAKARDLFLAM-P----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFG 146 (571)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m-~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g 146 (571)
.+...+.+.|++++|++++++. . ..|...|..+...+...++++.|++.++++...+ +..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3456677778888888887432 2 1245556666666667778888888887776433 3455556655 5777
Q ss_pred CHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCchHHHHHHHHH
Q 008280 147 KVDLAEKLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQL 223 (571)
Q Consensus 147 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 223 (571)
++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|......+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78888777766533 455667777777888888888888888766532 234555666667777777888888888887
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 008280 224 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 300 (571)
Q Consensus 224 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 300 (571)
+++.. |.|..+.+.++.++...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 77765 4456677777888888888777666665543 3466677777888888888888888888876643 33566
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
....+..++...|+.++|.++..++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 666777777888888888777766543
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=3.9e-11 Score=121.07 Aligned_cols=278 Identities=10% Similarity=-0.018 Sum_probs=190.1
Q ss_pred hcCCHHHHHHHHhhCCC--CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCchHHHH
Q 008280 144 KFGKVDLAEKLFDEMPT--KNL-VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCSHLSSLQLGK 218 (571)
Q Consensus 144 ~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a~ 218 (571)
..|+++.|++.+.+..+ |+. ..+-....++.+.|+++.|.+.|.+..+. .|+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46788888887776654 332 33344456677778888888888877654 34432 2333455666778888888
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHH----HHHHHHHHcCChHHHHHHHHHHH
Q 008280 219 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWN----AMISGYAQHGKGEKALRLFDKMK 291 (571)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 291 (571)
..++.+.+.. |.+..+...+..+|.+.|++++|.+.+..+.+. +...+. ....+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888776 556677788888888888888888888877743 222221 11112233333334444555555
Q ss_pred HcCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHh-HHHHHHHH--HHcCCHHHHHHHHHhC-CCC
Q 008280 292 DEGM---KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH-YTCMVDLL--GRAGKLVEAVDLIKKM-PFK 364 (571)
Q Consensus 292 ~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~--~~~g~~~~A~~~~~~~-~~~ 364 (571)
.... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++..+ ...++.+.+.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 136777888889999999999999999999874 344321 10122222 3357788888888776 223
Q ss_pred CC-H--hHHHHHHHHHHhcCCHhHHHHHHH--HHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 365 PQ-P--AIFGTLLSACRVHKRLDLAEFAAM--NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 365 p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
|+ + ....++...|.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 3 567789999999999999999999 5777889875 67799999999999999999998653
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=5.2e-10 Score=110.24 Aligned_cols=388 Identities=10% Similarity=0.053 Sum_probs=287.6
Q ss_pred ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHH
Q 008280 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISG 110 (571)
Q Consensus 37 ~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~ 110 (571)
++..|...+. - .+.++|+-++.+..+ .+...|. +|++...++.|..++++..+ .+...|.+....
T Consensus 379 sv~LWKaAVe----l-E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 379 SVRLWKAAVE----L-EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKL 449 (913)
T ss_pred hHHHHHHHHh----c-cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Confidence 3445554443 2 455557777766544 2333344 45556677888888777653 577888888777
Q ss_pred HHHcCChHHHHHHHhhCC--------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-CHHHHHHHHHHHHHc
Q 008280 111 YIECGQLDKAVELFKVAP--------VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-----K-NLVTWNAMIAGYVEN 176 (571)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~ 176 (571)
--++|+.+...++..+.. .-+...|-.=...+-..|..-.+..+...... . --.+|+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 778888888888776553 22334454444555555555555555444431 1 235888888889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 008280 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 256 (571)
+.++-|..+|...++. .+.+...|......--..|..+.-..+++.++..- +.....|.....-+...|++..|+.++
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999888774 23455667666666667788899999999888764 445566777777788899999999998
Q ss_pred HhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC
Q 008280 257 LEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 333 (571)
Q Consensus 257 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 333 (571)
....+ .+...|.+-+..-..+.+++.|..+|.+... ..|+...|..-+..-.-.++.++|.+++++.++. ++.
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 87764 3567898889999999999999999999876 4567777776666667789999999999999874 344
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHH
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
-...|..+.+.+-+.++++.|.+.|..- ..-|+ +..|..|...--+.|+.-+|..++++..-.+|++.. .|...+.+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~-lwle~Ir~ 762 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL-LWLESIRM 762 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch-hHHHHHHH
Confidence 4678889999999999999999998776 32344 578988888888999999999999999999999998 99999999
Q ss_pred HhhccChhHHHHHHHHHHhCCCccCCceeEE
Q 008280 412 YAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442 (571)
Q Consensus 412 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 442 (571)
-.+.|+.++|..+..+..+.- |..|.-|.
T Consensus 763 ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 999999999998877666543 22455564
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.5e-09 Score=103.16 Aligned_cols=415 Identities=12% Similarity=0.105 Sum_probs=308.5
Q ss_pred CCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCCHHHHHHH
Q 008280 19 QRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDT-ASWNTMISGFVQKKNMAKARDL 92 (571)
Q Consensus 19 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~-~~~~~li~~~~~~g~~~~A~~~ 92 (571)
.+ .+..|+.+|+.... .+...|-.-+.+=.++ ..+..|+.++++... |.+ ..|--.+-+=-..|++..|.++
T Consensus 86 q~-e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44 78889999998875 6777788888888888 999999999998643 222 3455566566667999999999
Q ss_pred HhhCC--CCCcchHHHHHHHHHHcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----C
Q 008280 93 FLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--K----N 162 (571)
Q Consensus 93 ~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~ 162 (571)
|++-. +||...|.+.|+.-.+...++.|..+|+... .|++..|--....=.++|++..|+.+|+...+ . +
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 98754 6999999999999999999999999999764 78888888889999999999999999998764 2 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCchHHHHH--------HHHHHHhCCCCCC
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN--ASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKD 232 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~--------~~~~~~~~g~~~~ 232 (571)
...+++...-=.++..++.|.-+|+-.+.. ++.+ ...|......=-+-|+...... -++..++.+ +.|
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~n 321 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCC
Confidence 234555555555677889999999887764 2323 2334333333233454433322 234445444 567
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCCCC-----hhhHHHHHHH--------HHHcCChHHHHHHHHHHHHcCCCCCH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKD-----VVTWNAMISG--------YAQHGKGEKALRLFDKMKDEGMKPDS 299 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~ 299 (571)
-.+|--.+..-...|+.+...++|++....- -..|...|-. -....+.+.+.++|+...+. ++...
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 7778888888888999999999999876421 1223322221 13467899999999998873 45556
Q ss_pred HHHHHHHHHH----HhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 008280 300 ITFVALLLAC----NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTL 373 (571)
Q Consensus 300 ~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 373 (571)
+||..+--.| .++.++..|.+++...+ |.-|...++...|+.=.+.+.++.+..++++. ...| |..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 7777654444 46788999999999887 88999999999999999999999999999987 3344 45899998
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCC-CCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEE
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNP-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 444 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 444 (571)
...-...|+.+.|..+|+-++.... +-|.-.+-..++.-...|.++.|..+++.+.++.-... +||..
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k---vWisF 546 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK---VWISF 546 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch---HHHhH
Confidence 8888999999999999999887432 22221555666667789999999999999987653311 67653
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=1.1e-09 Score=112.22 Aligned_cols=334 Identities=17% Similarity=0.256 Sum_probs=246.8
Q ss_pred CCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhh---CCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 008280 19 QRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQR---LPIKDTASWNTMISGFVQKKNMAKARDL 92 (571)
Q Consensus 19 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~---m~~~d~~~~~~li~~~~~~g~~~~A~~~ 92 (571)
.| ++++|.+++.++.+ .+...|.+|...|-+. |+.+++...+-- ..+.|..-|-.+.....+.|.+++|.-.
T Consensus 152 rg-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RG-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 36 99999999998865 4557889999998888 999999876543 4566888999999999999999999999
Q ss_pred HhhCCCCCcchH---HHHHHHHHHcCChHHHHHHHhhCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 008280 93 FLAMPEKNSVSW---SAMISGYIECGQLDKAVELFKVAPVKSV--------VAWTAMISGYMKFGKVDLAEKLFDEMPT- 160 (571)
Q Consensus 93 ~~~m~~~d~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~- 160 (571)
|.+..+.++.-| ---+..|-+.|+...|...|.++...++ ..--..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 998876433333 3446788899999999999988864444 1222345667777877889888887764
Q ss_pred -C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH----------------------H----HHHHHHHhc
Q 008280 161 -K---NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS----------------------L----SSVLLGCSH 210 (571)
Q Consensus 161 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t----------------------~----~~ll~~~~~ 210 (571)
. +...++.++..|.+...++.|......+.....++|..- | ..+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 2 334788899999999999999988888776222222111 1 122334456
Q ss_pred cCchHHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHcCChHHHH
Q 008280 211 LSSLQLGKQVHQLVFKSP--LCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKAL 284 (571)
Q Consensus 211 ~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 284 (571)
....+....+........ ...+...+.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|..++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 666677777777777766 344567788899999999999999999998875 35678999999999999999999
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHH-------hcCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 008280 285 RLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVN-------DYGIAAKPDHYTCMVDLLGRAGKLVEAVD 356 (571)
Q Consensus 285 ~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 356 (571)
+.|+..... .|+.. .-..|...+.+.|+.++|.+.+..+.. ..+..|+........+.|...|+.++=+.
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999998874 45443 455666778899999999999887531 11344555555566677777777766433
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=9.1e-12 Score=123.25 Aligned_cols=192 Identities=15% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 241 (571)
+.+|-++..+|..+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+.++... +.+-..|..|..
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGT 497 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhh
Confidence 345555555555555555555555544432 22 33444444444444444555555554444322 122223333455
Q ss_pred HHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 008280 242 MYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 318 (571)
.|.|.++++.|+-.|++..+ .+.+....+...+.+.|+.++|+.+|++......+ |..+-..-...+...++.++|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHH
Confidence 55555555555555555443 23334444444455555555555555555443221 222222233334444555555
Q ss_pred HHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHh
Q 008280 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360 (571)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 360 (571)
.+.++++++ -.+.+..++..++..|.+.|+.+.|+.-|.-
T Consensus 577 l~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 577 LQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred HHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 555555543 2222344455555555555555555554433
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.7e-10 Score=104.53 Aligned_cols=278 Identities=15% Similarity=0.182 Sum_probs=148.9
Q ss_pred CCCHHHHHHHHhhCCCCCcchH---HHHHHHHHHcCChHHHHHHHhhCCCC-Ch------hHHHHHHHHHHhcCCHHHHH
Q 008280 83 KKNMAKARDLFLAMPEKNSVSW---SAMISGYIECGQLDKAVELFKVAPVK-SV------VAWTAMISGYMKFGKVDLAE 152 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~~d~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~~~g~~~~A~ 152 (571)
.++.++|.++|-+|.+.|+.|+ -+|.+.|-+.|..+.|+.+++.+..+ |. .+...|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4577788888877776555544 45677788888888888887766533 22 23445667788888888888
Q ss_pred HHHhhCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCchHHHHHHHHHHH
Q 008280 153 KLFDEMPTKN---LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS----SLSSVLLGCSHLSSLQLGKQVHQLVF 225 (571)
Q Consensus 153 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~ 225 (571)
++|..+.+.+ ..+...|+..|.+..+|++|++.-+++.+.+-++..+ .|.-+........+++.|...+..+.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8888877532 2356677888888888888888888887765444322 12223333333344555555555444
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008280 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305 (571)
Q Consensus 226 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 305 (571)
+.+ +..+.+--.+.+.+ ...|+++.|.+.++...+.+..--..+...|
T Consensus 208 qa~-~~cvRAsi~lG~v~-------------------------------~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 208 QAD-KKCVRASIILGRVE-------------------------------LAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhC-ccceehhhhhhHHH-------------------------------HhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 443 22333333344444 4455555555555554444322222334444
Q ss_pred HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHhHHHHHHHHHH---hcC
Q 008280 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD-LIKKMPFKPQPAIFGTLLSACR---VHK 381 (571)
Q Consensus 306 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~p~~~~~~~l~~~~~---~~g 381 (571)
..+|.+.|+.+++...+..+.+. .+.+..-..+.+......-.+.|.. +.+.+..+|+...+..|+..-. .-|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 45555555555555555544432 2222333333333322222333332 2333344556555555555432 223
Q ss_pred CHhHHHHHHHHHhc
Q 008280 382 RLDLAEFAAMNLFN 395 (571)
Q Consensus 382 ~~~~a~~~~~~~~~ 395 (571)
...+....++.|+.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 34444445555543
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.6e-10 Score=102.45 Aligned_cols=297 Identities=11% Similarity=0.118 Sum_probs=192.9
Q ss_pred cCChHHHHHHHhhCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCCC-CCHH------HHHHHHHHHHHcCChhHHH
Q 008280 114 CGQLDKAVELFKVAPVKSVVA---WTAMISGYMKFGKVDLAEKLFDEMPT-KNLV------TWNAMIAGYVENSWAEDGL 183 (571)
Q Consensus 114 ~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A~ 183 (571)
..+.++|+++|-+|.+.|+.+ .-+|.+.|-+.|.+|.|+++-+.+.+ ||.. +...|..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 356677777777666554433 34566677777777777777666553 3322 3344555566667777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC
Q 008280 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263 (571)
Q Consensus 184 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 263 (571)
.+|..+.+.| .--......++..|....+|++|..+-..+.+.+-.+... .+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA----------------------- 180 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA----------------------- 180 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH-----------------------
Confidence 7776666543 1223344445555555555555555554444443111100 011
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHH
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF-VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 342 (571)
..|.-+...+....+.+.|..++.+..+.+ |+.+-- ..+.......|+++.|.+.++.+.+. +..--+.+...|.
T Consensus 181 -qfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~ 256 (389)
T COG2956 181 -QFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLY 256 (389)
T ss_pred -HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 134445555666778889999999988754 443322 34557888999999999999999875 3333367888999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh---hccCh
Q 008280 343 DLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA---AMKKW 418 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~---~~g~~ 418 (571)
.+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.-- .+..|+.... .-|++
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~--gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR--GFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH--HHHHHHHhhhccccccch
Confidence 9999999999999998877 3445555556666665666667888888888888899765 4556655542 34668
Q ss_pred hHHHHHHHHHHhCCCccCCceeEEE
Q 008280 419 DDVARIRLSMKENNVVKMPGYSWIE 443 (571)
Q Consensus 419 ~~a~~~~~~m~~~~~~~~~~~s~~~ 443 (571)
.+..-.++.|....++..|.|....
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCceecc
Confidence 8888889999988777777665443
No 51
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=9.9e-10 Score=103.13 Aligned_cols=335 Identities=17% Similarity=0.209 Sum_probs=232.1
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC----CCcchHHHHHHHHHHcCChHHHHHHHhhC-
Q 008280 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVA- 127 (571)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~- 127 (571)
|++.+ ++-+...+...++..||.+.++-...+.|.+++++-.. -+..+||.+|.+-.-.. ..++..+|
T Consensus 193 G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMi 265 (625)
T KOG4422|consen 193 GAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMI 265 (625)
T ss_pred ccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHH
Confidence 66554 66666667778999999999999999999999988753 36778888887754433 35555555
Q ss_pred ---CCCChhHHHHHHHHHHhcCCHHHHHHHH----hhCC----CCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHH----
Q 008280 128 ---PVKSVVAWTAMISGYMKFGKVDLAEKLF----DEMP----TKNLVTWNAMIAGYVENSWAED-GLKLLRMMIG---- 191 (571)
Q Consensus 128 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~---- 191 (571)
..||..++|++++..++.|+++.|++.+ .+|. +|...+|..+|..+.+.+++.+ |..++.+.+.
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 4789999999999999999998876655 4444 4888999999999999888755 5555555543
Q ss_pred CCCC---C-CHhHHHHHHHHHhccCchHHHHHHHHHHHhCC----CCCC---cchHHHHHHHHHhcCCHHHHHHHHHhhC
Q 008280 192 LGIR---P-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP----LCKD---TTALTPLISMYCKCGDLEDACKLFLEIQ 260 (571)
Q Consensus 192 ~g~~---p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~ 260 (571)
..++ | |...|...+..|.+..+.+.|.+++....... +.++ ..-|..+..+.+....++.-...|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 3 55678889999999999999999998765431 2232 2345567778888888999999999887
Q ss_pred C----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------------------cHH
Q 008280 261 R----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG--------------------LVD 316 (571)
Q Consensus 261 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--------------------~~~ 316 (571)
. ++..+-..++.+....|+++-.-+++..++..|..-+...-.-++.-.++.. ++.
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 4 4566666677777778888777778877777664444433333333333222 111
Q ss_pred HHHH-HHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 008280 317 LGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 317 ~a~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
++.+ .-.++. .........++..-.+.|.|+.++|.+++.-. |..|......-++..-.+.+....|..
T Consensus 506 e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 506 EAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 1111 111122 23445667788888999999999999988655 333443344455566677778888888
Q ss_pred HHHHHhccC
Q 008280 389 AAMNLFNLN 397 (571)
Q Consensus 389 ~~~~~~~~~ 397 (571)
+++-+...+
T Consensus 583 ~lQ~a~~~n 591 (625)
T KOG4422|consen 583 VLQLASAFN 591 (625)
T ss_pred HHHHHHHcC
Confidence 888775543
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1e-10 Score=108.70 Aligned_cols=197 Identities=16% Similarity=0.084 Sum_probs=162.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008280 232 DTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308 (571)
Q Consensus 232 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 308 (571)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345677788899999999999999987653 346778888899999999999999999988764 3355677778888
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHH
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLA 386 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 386 (571)
+...|++++|.+.++........+.....+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764222334567778889999999999999999887 2233 456788888999999999999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 387 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
...++++++..|.++. .+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAE-SLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888777 888899999999999999999887754
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=1.2e-09 Score=102.15 Aligned_cols=274 Identities=12% Similarity=0.124 Sum_probs=188.8
Q ss_pred cCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHH
Q 008280 145 FGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 221 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 221 (571)
.|++..|+++..+-.+ .....|..-+.+.-+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6888888888876543 2233455555666777888888888887776422344445555556667778888888887
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC-----------hhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD-----------VVTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 222 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
..+.+.+ +.++.+.......|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777776 5567777778888888888888888888877532 235666666555555555544555554
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHH----hCCCCCC
Q 008280 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK----KMPFKPQ 366 (571)
Q Consensus 291 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~p~ 366 (571)
-.. .+-+...-.+++.-+...|+.++|.++..+..++ +..|.. ..++ ...+-++.+.-++..+ ..|. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 332 3444555566777777888888888888777765 445441 1111 1233444444333333 3343 3
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+..+.+|...|.+++.+.+|...|+.+++..|+.. .|..++.++.+.|+.++|.+++++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS--DYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 47889999999999999999999999999999875 89999999999999999999988765
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=1.1e-08 Score=95.88 Aligned_cols=279 Identities=12% Similarity=0.078 Sum_probs=167.8
Q ss_pred CCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 008280 83 KKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGKVDLAEKLF 155 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 155 (571)
.|++.+|.++..+-.+ .....|..-+.+.-+.|+.+.+-..+.+..+. +..+.-+........|+.+.|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4566666655554332 11223333344444555555555555544322 2234444445555555555555444
Q ss_pred hhCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCC
Q 008280 156 DEMP---TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232 (571)
Q Consensus 156 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 232 (571)
+++. .+++........+|.+.|++.+...++.+|.+.|+-.|+..-. ..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------le 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------LE 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------HH
Confidence 4432 2444555555555555555555555555555555433221100 01
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
..+++.+++=....+..+.-...++..++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+- ..+-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 12344444444444444444456666653 35666677777788888888888888887777666652 223356
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
.+.++...-.+..+.-.+.++. ++..+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+-+..++.+.|+.++|.+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 6677777766766666664333 4477888888888999999999888866 677888899999999999999999988
Q ss_pred HHHHHhc
Q 008280 389 AAMNLFN 395 (571)
Q Consensus 389 ~~~~~~~ 395 (571)
..++.+.
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 8888764
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.4e-08 Score=97.85 Aligned_cols=408 Identities=11% Similarity=0.085 Sum_probs=237.1
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHH--HcCCCH
Q 008280 12 VLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF--VQKKNM 86 (571)
Q Consensus 12 l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~--~~~g~~ 86 (571)
=++.+.+.| .+++|.+.-.++.. .|...+..-+.+..+. +.+++|+.+.+.-...+....-.+=.+| .+.+..
T Consensus 18 ~ln~~~~~~-e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNG-EYEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccch-HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 355667777 99999999998875 3455667777778888 9999999877765432221111123444 478999
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHH-HHhcCCHHHHHHHHhhCCCCCH--
Q 008280 87 AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG-YMKFGKVDLAEKLFDEMPTKNL-- 163 (571)
Q Consensus 87 ~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~-- 163 (571)
++|+..++-..+.|..+...-...+-+.|++++|.++|+.+...+...+...+.+ +...+-.-.+. +.+..+....
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcch
Confidence 9999999966555666777778889999999999999998854433222222211 00111111111 2333333212
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHHHHHHCC-------CCC------CHh-HHHHHHHHHhccCchHHHHHHHHHHHhCC
Q 008280 164 -VTWNAMIAGYVENSWAEDGLKLLRMMIGLG-------IRP------NAS-SLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228 (571)
Q Consensus 164 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~p------d~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 228 (571)
..+......++..|++.+|+++++...+.+ -.. +.. .-..+.-.+...|+.++|..++..+++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 222223444556666666666666652111 000 000 11223334455666666666666666554
Q ss_pred CCCCcc----hHHHHHHHHHh---------------------------------------------cCCHHHHHHHHHhh
Q 008280 229 LCKDTT----ALTPLISMYCK---------------------------------------------CGDLEDACKLFLEI 259 (571)
Q Consensus 229 ~~~~~~----~~~~li~~y~~---------------------------------------------~g~~~~A~~~~~~~ 259 (571)
++|.. ..|.|+.+-.. .+..+.+.++-..+
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 22221 11222221111 12223333333333
Q ss_pred CCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH--------HhHHh
Q 008280 260 QRKD-VVTWNAMISGYA--QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD--------SMVND 328 (571)
Q Consensus 260 ~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~ 328 (571)
+... ...+..++.... +...+.+|.+++...-+....-........+......|+++.|.+++. .+.+
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~- 412 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE- 412 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-
Confidence 3211 223333333322 222467777777777654222223344555667788999999999998 4443
Q ss_pred cCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--------PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 329 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
+.-.+.+-.+++.+|.+.++-+-|..++.+. +..+. ..+|.-+...-.++|+-++|...++++++.+|+
T Consensus 413 --~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 413 --AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred --hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 2334555667888899988877777776655 21222 133444444456789999999999999999999
Q ss_pred CCchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 400 NAAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 400 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
+.. +...+..+|++. +.+.|..+-+.+
T Consensus 491 d~~-~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 491 DTD-LLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHH-HHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 988 999999999877 466676665433
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=2.2e-09 Score=112.72 Aligned_cols=258 Identities=14% Similarity=0.046 Sum_probs=188.9
Q ss_pred CCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh---------ccCchHHHHHHHHHHH
Q 008280 161 KNLVTWNAMIAGYVE-----NSWAEDGLKLLRMMIGLGIRPNA-SSLSSVLLGCS---------HLSSLQLGKQVHQLVF 225 (571)
Q Consensus 161 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 225 (571)
.+...|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 355666666666422 13467999999999875 4544 34444443332 2345889999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-H
Q 008280 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI-T 301 (571)
Q Consensus 226 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 301 (571)
+.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 886 66778888899999999999999999998764 3 45688889999999999999999999998864 4432 3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACR 378 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 378 (571)
+..++..+...|++++|...++++.+. .+| ++..+..+..+|...|+.++|...++++ +..|+. ..++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566689999999999988763 234 4566778889999999999999999887 334553 44555666667
Q ss_pred hcCCHhHHHHHHHHHhc---cCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 379 VHKRLDLAEFAAMNLFN---LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
..| +.|...++++++ ..|.++. .+...|.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPG----LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCch----HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 478877777765 4455543 377777788888888777 7777654
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=1.2e-07 Score=93.89 Aligned_cols=418 Identities=13% Similarity=0.129 Sum_probs=274.8
Q ss_pred chHHHHHHHHHhCCCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 008280 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81 (571)
Q Consensus 7 ~~~~~l~~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~ 81 (571)
..|-.-++...+.| ++..-+.+|+.... .....|...+...-+. |-++-+..+|++-.+-++..-+-.|..++
T Consensus 103 RIwl~Ylq~l~~Q~-~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQG-LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45666677777888 89999999987653 3445788888877777 88999999999988888888889999999
Q ss_pred cCCCHHHHHHHHhhCCCC----------CcchHHHHHHHHHHcCChH---HHHHHHhhCCCC--C--hhHHHHHHHHHHh
Q 008280 82 QKKNMAKARDLFLAMPEK----------NSVSWSAMISGYIECGQLD---KAVELFKVAPVK--S--VVAWTAMISGYMK 144 (571)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~----------d~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~--~--~~~~~~li~~~~~ 144 (571)
+.+++++|.+.+...... +...|.-+-...+++.+.- ....+++.+... | -..|++|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 999999999999888542 4456777777666654432 233456666532 2 2789999999999
Q ss_pred cCCHHHHHHHHhhCCCC--CHHHHHHHHHHHHHc----------------CC------hhHHHHHHHHHHHCCC------
Q 008280 145 FGKVDLAEKLFDEMPTK--NLVTWNAMIAGYVEN----------------SW------AEDGLKLLRMMIGLGI------ 194 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~------ 194 (571)
.|.++.|.++|++.... .+.-++.+.++|++- |+ ++-.+.-|+.+...+.
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999886642 222344444444331 11 1222333333332210
Q ss_pred -----CCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCC-----CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCCh
Q 008280 195 -----RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-----LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 264 (571)
Q Consensus 195 -----~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 264 (571)
+.+..+|..-.. ...|+..+-...+.++++.- ...-...|..+...|-..|+++.|+.+|++..+-+-
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 111112221111 12355666677777777642 112245688999999999999999999999876432
Q ss_pred -------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHhcCcHHHHHH
Q 008280 265 -------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-----------------DSITFVALLLACNHAGLVDLGIQ 320 (571)
Q Consensus 265 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~ 320 (571)
.+|..-...-.++.+++.|+++.+......-.| +...|...+..-...|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 356666666677889999999888765422111 11234444444556677888888
Q ss_pred HHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-C-CCCH-hHHHHHHHHHHh---cCCHhHHHHHHHHH
Q 008280 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-F-KPQP-AIFGTLLSACRV---HKRLDLAEFAAMNL 393 (571)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~-~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~ 393 (571)
+|+.++.-.-..|... ......+-...-++++.+++++- + + .|++ ..|++.+.-+.+ ....+.|..+|+++
T Consensus 499 vYdriidLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8888876433334322 22333455667799999999987 2 1 2554 588888776643 34689999999999
Q ss_pred hccCCC-CCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 394 FNLNPA-NAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 394 ~~~~p~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
++.-|. .....|...+..-.+-|.-..|..++++...
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 997663 2322344444455566888889999887643
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.1e-08 Score=99.84 Aligned_cols=269 Identities=13% Similarity=0.037 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHc
Q 008280 103 SWSAMISGYIECGQLDKAVELFKVAPVKSV---VAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVEN 176 (571)
Q Consensus 103 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 176 (571)
.......-|...+++.+..++.+...+.++ ..+..-|..+...|+..+-..+=.++.+ ...++|-++..-|.-.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 333344444455555555555555443332 2222333344444443322222222221 1234555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 008280 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 256 (571)
|...+|.+.|.+..... +.-...|.....+++..|..++|...+..+-+.= +...--+--+.--|.+.++++-|.++|
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 55555555555544321 1112344455555555555555555555444421 001111112333355556666666666
Q ss_pred HhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 257 LEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE----G--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 257 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
.+.. ..|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+..++..+.
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5543 235555555555555556666666666654310 0 011334566667777777777777777776664
Q ss_pred hcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 008280 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLS 375 (571)
Q Consensus 328 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 375 (571)
-.+.+..++.++.-.|...|+++.|.+.|.+. .++|+..+-..++.
T Consensus 484 --l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 484 --LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred --cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34455666666666666666666666666555 45566555444444
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-07 Score=89.38 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=202.9
Q ss_pred HHHHHHHHH--cCChHHHHHHHh-----hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHH---HHHHH
Q 008280 105 SAMISGYIE--CGQLDKAVELFK-----VAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAM---IAGYV 174 (571)
Q Consensus 105 ~~li~~~~~--~g~~~~A~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~ 174 (571)
..-+.++++ .++-..|.+++- .....|+....++.+.|...|+.++|+..|++...-|+.+...| .-.+.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH
Confidence 334555544 355455555442 22366788899999999999999999999998776555443332 34456
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 008280 175 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 254 (571)
Q Consensus 175 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 254 (571)
+.|+.++...+...+.... +-....|..-+...-...+++.|..+-+..++.. +.++..+-.-..++...|+.++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHH
Confidence 7888888888777776531 1222233333333345667777877777777665 4455555555677788899999998
Q ss_pred HHHhhC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCcHHHHHHHHHHhHHhc
Q 008280 255 LFLEIQ--R-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-LACN-HAGLVDLGIQYFDSMVNDY 329 (571)
Q Consensus 255 ~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~ 329 (571)
.|.... . -+..+|.-|+..|...|++.+|...-+...+. ..-+..++..+. ..|. ....-++|..++++-.
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--- 431 (564)
T KOG1174|consen 356 AFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--- 431 (564)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---
Confidence 898654 3 47789999999999999999988877665432 233444444332 2222 2223467888887765
Q ss_pred CCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 330 GIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 330 ~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.+.|+ ...-+.+.+.+.+.|..++++.++++. ...||...-+.|...++..+.+.+|...|..++.++|++..
T Consensus 432 ~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 432 KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 34666 556677888889999999999999876 56688888999999999999999999999999999998764
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.1e-11 Score=82.27 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 008280 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210 (571)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 210 (571)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=4.6e-09 Score=97.55 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 243 (571)
..+..+...|...|++++|++.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445555666666666666666666655432 1223344444444445555555555555444432 22233344444444
Q ss_pred HhcCCHHHHHHHHHhhCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 008280 244 CKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318 (571)
Q Consensus 244 ~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 318 (571)
...|++++|.+.|++.... ....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4455555555554443321 12233334444444444444444444443321 11222333344444444444444
Q ss_pred HHHHHHhH
Q 008280 319 IQYFDSMV 326 (571)
Q Consensus 319 ~~~~~~~~ 326 (571)
..++++..
T Consensus 189 ~~~~~~~~ 196 (234)
T TIGR02521 189 RAYLERYQ 196 (234)
T ss_pred HHHHHHHH
Confidence 44444443
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.8e-09 Score=108.26 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=164.6
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhC-----CC-CCCcc-hHHHHHHHHHhcCCHHHHHHHHHhhCC-------C--
Q 008280 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-----PL-CKDTT-ALTPLISMYCKCGDLEDACKLFLEIQR-------K-- 262 (571)
Q Consensus 199 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 262 (571)
.+...+...|...|+++.|..+++..++. |. .+.+. ..+.+..+|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666677777777777777666543 21 11211 233466788888888888888887652 1
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC--C
Q 008280 263 --DVVTWNAMISGYAQHGKGEKALRLFDKMKD-----EGMKPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYG--I 331 (571)
Q Consensus 263 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 331 (571)
-..+++.|...|.+.|++++|...+++..+ .|..+.. ..++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235677888888999998888887776532 1222222 2466677789999999999999887765433 2
Q ss_pred CCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhc--
Q 008280 332 AAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFN-- 395 (571)
Q Consensus 332 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 395 (571)
.++ ..+++.|...|...|++++|.++++++ +..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 457899999999999999999999887 11222 35678888999999999999999987754
Q ss_pred --cCCCC---CchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 396 --LNPAN---AAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 396 --~~p~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
.+|+. .. +|..|+..|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~-~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTY-TYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHH-HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34443 44 78899999999999999999988775
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.3e-11 Score=81.29 Aligned_cols=50 Identities=50% Similarity=0.789 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008280 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311 (571)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 311 (571)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=1.4e-07 Score=93.41 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=94.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH---hcCcHHHHHHHHHHhHHhcCCCCChH--hHHHHHHHHHHcC
Q 008280 276 QHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACN---HAGLVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRAG 349 (571)
Q Consensus 276 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g 349 (571)
.+.-++++.+++++-+..=..|+.. .|+..+.-+. ....++.|+.+|++.++ +.+|... .|......=-+.|
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhh
Confidence 3445666666666544432334432 3444443332 23467889999998886 6665522 2222223334568
Q ss_pred CHHHHHHHHHhC--CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc-hhHHHHHHHHhhccChhHHHHH
Q 008280 350 KLVEAVDLIKKM--PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA-GCYVQLANIYAAMKKWDDVARI 424 (571)
Q Consensus 350 ~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~~l~~~~~~~g~~~~a~~~ 424 (571)
....|+.++++. .+++. ...|+..|.--...=-+.....+|+++++.-|+... ......+++-.+.|..+.|..+
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 888889999887 23333 257777776554444456667888888888777542 1334566777889999999999
Q ss_pred HHHHHhC
Q 008280 425 RLSMKEN 431 (571)
Q Consensus 425 ~~~m~~~ 431 (571)
+..-.+-
T Consensus 681 ya~~sq~ 687 (835)
T KOG2047|consen 681 YAHGSQI 687 (835)
T ss_pred HHhhhhc
Confidence 8765543
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=9.9e-10 Score=111.91 Aligned_cols=263 Identities=15% Similarity=0.162 Sum_probs=192.6
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC
Q 008280 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 263 (571)
Q Consensus 184 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 263 (571)
.++-.+...|+.|+.+||..++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999998888899999999999999999888775 678
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
..+|+.|..+|.++|+..- |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999765 333322 233445566666666666666655432223445543 3555
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHH
Q 008280 344 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK-RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 422 (571)
...-.|.++.++++...+|...-.......++-+.... .+++-....+...+ .|+. . +|..+...-..+|+.+.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s-~-~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTS-E-TLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCCh-H-HHHHHHHHHHhcCchhhHH
Confidence 66777889999999998864321112222344443333 34444444444455 6655 4 8999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccc
Q 008280 423 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 487 (571)
Q Consensus 423 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~ 487 (571)
.+..+|+++|.+..+.+-|-.+- |... ..-++.+.+-|++.|+.||+.+.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~--------g~~~-------~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLL--------GINA-------AQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhh--------cCcc-------chHHHHHHHHHHHhcCCCCcchh
Confidence 99999999999988888875432 2111 12266788999999999999986
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=3.6e-09 Score=111.09 Aligned_cols=242 Identities=13% Similarity=0.025 Sum_probs=172.0
Q ss_pred CCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc
Q 008280 146 GKVDLAEKLFDEMPT--K-NLVTWNAMIAGYVE---------NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213 (571)
Q Consensus 146 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 213 (571)
+.+++|...|++..+ | +...|..+..+|.. .+++++|...+++..+.. +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 346789999988775 3 34566666655542 234789999999998764 3356677777777888999
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV---VTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 214 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
+++|...++++++.+ +.+...+..+...|...|++++|...+++..+.++ ..+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999886 55677888899999999999999999999865322 23344455577789999999999998
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC----CCC
Q 008280 291 KDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFK 364 (571)
Q Consensus 291 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 364 (571)
.... .|+ ...+..+..++...|+.++|...+.++... .|+ ....+.+...|.+.| ++|...++.+ ...
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7653 343 444666777888999999999999887642 343 444556666777777 4676666655 223
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 398 (571)
+....+ +-..+.-+|+.+.+... +++.+.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 333344 33445567777777666 77766543
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.2e-07 Score=87.33 Aligned_cols=262 Identities=8% Similarity=-0.064 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHH
Q 008280 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239 (571)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 239 (571)
.|+.....+...+...|+.++|+..|++.+.. .|+..+- -.-.-.+...|+.+....+...+.... ..+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 46778888899999999999999999887754 3433221 111122356677777777766665432 1222233333
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 316 (571)
+.......+++.|+.+-++..+- ++..+-.-...+.+.|++++|.-.|+..+... +-+...|..|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 34445567888888888877654 44455545567788899999999999887642 235668999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHhHHHHHHHH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMV-DLLG-RAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMN 392 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (571)
+|.-.-+...+ -++.+..+...+. ..+. ...--++|.+++++. .+.|+- ...+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 98877776665 3444555544442 2222 122347788888876 666773 5677788889999999999999999
Q ss_pred HhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 393 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 393 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.+...|+.. .+..|++.+...+.+++|...|.....
T Consensus 464 ~L~~~~D~~--LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDVN--LHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhccccH--HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999886 799999999999999999998876654
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.19 E-value=7.5e-08 Score=98.61 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc---CCCCCchhHHH
Q 008280 336 DHYTCMVDLLGRAGKLVEAVDLIKKMP-----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL---NPANAAGCYVQ 407 (571)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~~ 407 (571)
..|..||+.+......+.|..+.++.. +.-|..-+..+.+...+.+....+..+++++.+. .|.... .+..
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~-~~f~ 570 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAI-ILFP 570 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHH-HHHH
Confidence 568889999999999999999998883 2334456777888889999999999999888663 333334 6677
Q ss_pred HHHHHhhccChhHHHHHHHHHHhCCCcc
Q 008280 408 LANIYAAMKKWDDVARIRLSMKENNVVK 435 (571)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 435 (571)
+.+.-...|+.+...++++-+...|+..
T Consensus 571 ~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 571 LLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888889999999999999998888765
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.1e-09 Score=99.23 Aligned_cols=231 Identities=16% Similarity=0.115 Sum_probs=164.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 008280 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246 (571)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 246 (571)
+.|..+|.+.|.+.+|.+.|+..+.. .|-..||..+-.+|.+..++..|..++.+-++. ++.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788889999999999888887765 566667777888888888888888888777765 355555556666777777
Q ss_pred CCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 008280 247 GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323 (571)
Q Consensus 247 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 323 (571)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..++++.+.|+. +...|..+.-+|.-.+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777776654 24555566666777777777777777777777754 55666666666666666666665555
Q ss_pred HhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCch
Q 008280 324 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403 (571)
Q Consensus 324 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 403 (571)
+.... ..+.++ -..+|..|.......|++..|.+.|+-++..+|++..
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e- 430 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE- 430 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH-
Confidence 44331 111111 1245666666667788888888888888888888877
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
+++.|+-.-.+.|++++|..++........
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888888888888888888888887766443
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.3e-07 Score=89.11 Aligned_cols=378 Identities=12% Similarity=0.029 Sum_probs=249.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHcC
Q 008280 10 NSVLAGFAKQRGKLKDAQELFDKIPQ--PD-VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT---ASWNTMISGFVQK 83 (571)
Q Consensus 10 ~~l~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~---~~~~~li~~~~~~ 83 (571)
....+-|-+.+ ++++|++.+.+..+ || ++-|...-.+|... |++++..+--....+-++ ..+.--.+++-+.
T Consensus 119 K~~GN~~f~~k-kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l-gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNK-KYDEAIKYYTQAIELCPDEPIFYSNRAACYESL-GDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred Hhhhhhhhhcc-cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH-hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 34455677788 99999999998875 77 77788888888888 999999887776665443 3444445667777
Q ss_pred CCHHHHHHHHhhC--CC--CCcchHHHHHHHHHHcCChHHHHHHHhhCCC------------------------------
Q 008280 84 KNMAKARDLFLAM--PE--KNSVSWSAMISGYIECGQLDKAVELFKVAPV------------------------------ 129 (571)
Q Consensus 84 g~~~~A~~~~~~m--~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------------ 129 (571)
|++++|+.=..-. .+ .|. +-..++.-..+.--...+.+-+..-.+
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 8877775311100 00 010 001111111110011222222221111
Q ss_pred CChhHHHHHHHHHHhc-CCHHHHHHHHhhC-------CCCC---------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008280 130 KSVVAWTAMISGYMKF-GKVDLAEKLFDEM-------PTKN---------LVTWNAMIAGYVENSWAEDGLKLLRMMIGL 192 (571)
Q Consensus 130 ~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 192 (571)
.|...-..+=..|... ..+..|...+.+- ...+ ..+...-...+.-.|+...|...|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 1111111111111111 1233333333221 1122 223333333456678999999999999987
Q ss_pred CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHHH
Q 008280 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNA 269 (571)
Q Consensus 193 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~ 269 (571)
.-.++. .|..+...|....+.++....|..+.+.+ +.++.+|..-..++.-.+++++|..=|++...- ++..|-.
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 533332 37777888999999999999999999987 677888888899999999999999999988753 5567777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC---------hHhHHH
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK---------PDHYTC 340 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~ 340 (571)
+..+.-+.+++++++..|++.++. ++.-...|+.....+...++++.|.+.|+..++ +.|+ +.+.-+
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhh
Confidence 777777889999999999999875 455567888889999999999999999998874 3444 222222
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccC
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (571)
++..- =.+++..|.+++++. .+.|. ...+.+|...-.+.|+.++|+++|++...+-
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222 238999999999988 44454 4688999999999999999999999986654
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=7.9e-09 Score=99.32 Aligned_cols=212 Identities=15% Similarity=0.070 Sum_probs=149.4
Q ss_pred CchHHHHHHHHHHHhCC-CCC--CcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSP-LCK--DTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALR 285 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 285 (571)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666676542 122 235577888889999999999999988764 357889999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-
Q 008280 286 LFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P- 362 (571)
Q Consensus 286 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~- 362 (571)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999874 444 567778888888999999999999988763 444322222223345678899999999664 2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHh-------ccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF-------NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 363 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
..|+ .|.. .......|+...+ ..++.+. ++.|+.+. +|..|+.+|...|++++|...|++..+.++
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~e-a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCE-TYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2233 2321 2223345555444 2344333 34566666 899999999999999999999998887654
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=7.4e-07 Score=82.18 Aligned_cols=379 Identities=12% Similarity=0.103 Sum_probs=222.8
Q ss_pred HHHcCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHH
Q 008280 47 CILLNSDDVVAAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123 (571)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~ 123 (571)
++.+- |++++|...|..+.. ++...|-.|.-++.-.|.+.+|..+-.+.++ ++---..|+..-.+.++-++-..+
T Consensus 66 C~fhL-gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 66 CYFHL-GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHhh-ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHH
Confidence 34444 777777777665432 3445555565555556667777666555433 222223344444555665555554
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH
Q 008280 124 FKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNA-MIAGYVENSWAEDGLKLLRMMIGLGIRPNASS 200 (571)
Q Consensus 124 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 200 (571)
.+.+.+ ...-.-+|..+....-.+++|++++.++.. |+....|. |.-+|.+..-++-+.+++.--.+. .||+.
T Consensus 144 h~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt- 219 (557)
T KOG3785|consen 144 HSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST- 219 (557)
T ss_pred HHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-
Confidence 444432 234445666665556678999999999875 44445554 445677888888888888776664 45543
Q ss_pred HHHHHHHHh--c--cCchHH--HHH----------HHHHHHhCCC-------------C----CCcchHHHHHHHHHhcC
Q 008280 201 LSSVLLGCS--H--LSSLQL--GKQ----------VHQLVFKSPL-------------C----KDTTALTPLISMYCKCG 247 (571)
Q Consensus 201 ~~~ll~~~~--~--~~~~~~--a~~----------~~~~~~~~g~-------------~----~~~~~~~~li~~y~~~g 247 (571)
+..=+.+|. + .|+..+ -.. ..+.+.+.++ + .-+.....|+--|.+.+
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 222233332 1 111111 111 1112222211 0 01223345666789999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHH
Q 008280 248 DLEDACKLFLEIQRKDVVTWNAMISGYAQHG-------KGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 248 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 319 (571)
++.+|..+.+++..-.+.-|-.-.-.++..| +..-|.+.|+-.-.++..-|.. .--++.+++--..++++..
T Consensus 300 dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 300 DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 9999999998886544444433333333333 3445666666554444433332 1223444555556788899
Q ss_pred HHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHhHHHHHH-HHHHhcCCHhHHHHHHHHHhcc
Q 008280 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--FKPQPAIFGTLL-SACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
.+++++.. +=...|...+ .+..++...|.+.+|+++|-++. .-.|..+|.+++ +.|.+.+..+.|-.++-++ -
T Consensus 380 ~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~ 455 (557)
T KOG3785|consen 380 TYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--N 455 (557)
T ss_pred HHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--C
Confidence 99888865 3333344444 57899999999999999998873 113556666555 5568889988887665443 2
Q ss_pred CCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCcc
Q 008280 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435 (571)
Q Consensus 397 ~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 435 (571)
.|.+.......+++-|.+++.+--|.+.|+.+......|
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 344333244567788999999999999999887765543
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-07 Score=95.67 Aligned_cols=127 Identities=15% Similarity=0.061 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHh
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRV 379 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 379 (571)
|......+...+..+++...+.+..+ ..+.....|......+...|.+++|.+.|... .+.|+ +.+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34455677788888888877777754 34455777888888899999999999998776 55666 4678889999999
Q ss_pred cCCHhHHHH--HHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 380 HKRLDLAEF--AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 380 ~g~~~~a~~--~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
.|+...|.. ++..+++.+|.++. .|..|+.++.+.|+.++|...|....+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~e-aW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHE-AWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999988888 99999999999999 9999999999999999999999877653
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=1.7e-08 Score=101.33 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCCHhHH-HHHHHHHhccCchHHHHHHHHHHHhC-----CC--C
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGL-----G-IRPNASSL-SSVLLGCSHLSSLQLGKQVHQLVFKS-----PL--C 230 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~--~ 230 (571)
+...+...|...|+++.|+.+++...+. | ..|...+. ..+...|...+++++|..+|+.++.. |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444778888888888888888776653 2 12333332 23555677888888888888877652 21 1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCC----------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCC
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR----------KDV-VTWNAMISGYAQHGKGEKALRLFDKMKDE---GMK 296 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 296 (571)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234566777789999999988888776542 122 24667788889999999999999876431 233
Q ss_pred CCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHHhc---CC--CCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 008280 297 PDS----ITFVALLLACNHAGLVDLGIQYFDSMVNDY---GI--AAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM----- 361 (571)
Q Consensus 297 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 361 (571)
++. .++..+...+.+.|++++|.++|++++... +. .+. ...++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 443 478899999999999999999999887642 11 122 446778889999999999999998876
Q ss_pred ---CCCCCH-hHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 362 ---PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 362 ---~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+..|+. .+|..|..+|...|+++.|+++.+++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344564 6899999999999999999999988863
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.3e-09 Score=95.54 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=161.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcC
Q 008280 237 TPLISMYCKCGDLEDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV-ALLLACNHAG 313 (571)
Q Consensus 237 ~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g 313 (571)
+-+...|.+.|.+.+|.+.|+.-. .+-+.+|..|-..|.+..+++.|+.+|.+-.+. .|-.+||. .....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 568889999999999999998765 367889999999999999999999999998764 57777764 4667888899
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
+.++|.++|+...+ ..+.+++...++...|.-.++++-|+.+++++ ++ .++..|+.+.-.|.-.++++.++..|
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999987 34566888889999999999999999999876 64 57788999998999999999999999
Q ss_pred HHHhcc--CCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 391 MNLFNL--NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 391 ~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
++++.. +|+...-+|..|+.+....|++.-|.+.|+-....+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 999874 355433389999999999999999999998776544
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=5.6e-08 Score=93.45 Aligned_cols=227 Identities=12% Similarity=-0.016 Sum_probs=148.0
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 008280 177 SWAEDGLKLLRMMIGLG-IRPN--ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 253 (571)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+..+++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666666431 2222 2345555666777788888888887777765 456778888888899999999999
Q ss_pred HHHHhhCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC
Q 008280 254 KLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330 (571)
Q Consensus 254 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 330 (571)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 98888754 3 4567888888888899999999999988775 34433222222234556788999999976554 2
Q ss_pred CCCChHhHHHHHHHHHHcCCHHH--HHHHHHhC-CC----CC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 331 IAAKPDHYTCMVDLLGRAGKLVE--AVDLIKKM-PF----KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 331 ~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
..|+...+ .++.. ..|+..+ +.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+|.+..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33332222 23333 3454433 33333221 11 11 2358899999999999999999999999999974433
Q ss_pred hhHHHHHHH
Q 008280 403 GCYVQLANI 411 (571)
Q Consensus 403 ~~~~~l~~~ 411 (571)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 133344443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=3.6e-08 Score=85.72 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 345 (571)
+...|.-+|.+.|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|+...+ --+.+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 34557778999999999999999988853 22445788888899999999999999998875 2334477888888889
Q ss_pred HHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHH
Q 008280 346 GRAGKLVEAVDLIKKMPFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a 421 (571)
+..|++++|...|++.-..|+ ..+|..+.-+..+.|+++.|...+++.++.+|+.+. +...+.....+.|++-+|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhcccchHH
Confidence 999999999999988832232 358888887788999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 008280 422 ARIRLSMKENNV 433 (571)
Q Consensus 422 ~~~~~~m~~~~~ 433 (571)
...++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988876654
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=8.5e-07 Score=89.97 Aligned_cols=391 Identities=10% Similarity=0.023 Sum_probs=238.9
Q ss_pred CCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCC-----ChhhHHH
Q 008280 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-----DTASWNT 75 (571)
Q Consensus 4 ~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~-----d~~~~~~ 75 (571)
-|..+|..|.-+...+| +++.+.+.|++... .....|+.+-..|... |.-..|..+++.-..+ |+..+-.
T Consensus 321 nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-GSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-ccchHHHHHHHhhcccccCCCcchHHHH
Confidence 35677788888888888 88888888887654 3445688887788887 8888888888765432 2222222
Q ss_pred HHHHHH-cCCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHHcC-----------ChHHHHHHHhhCC---CCCh
Q 008280 76 MISGFV-QKKNMAKARDLFLAMPE--------KNSVSWSAMISGYIECG-----------QLDKAVELFKVAP---VKSV 132 (571)
Q Consensus 76 li~~~~-~~g~~~~A~~~~~~m~~--------~d~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~---~~~~ 132 (571)
.-..|. +-+..++++.+-.+... -....+..+.-+|...- ...++++.+++.. +.|+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 222232 33556666555544421 13344555544443321 1235555566553 3455
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 008280 133 VAWTAMISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLG 207 (571)
Q Consensus 133 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~ 207 (571)
.+...+.--|+-.++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- |+ ......-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhh
Confidence 555555556778888888888777654 3567889999989999999999999887766531 11 0000000111
Q ss_pred HhccCchHHHHHHHHHHH---------------------hCCC-------CCCcchHHHHHHHHHhcC---CHHHHHHHH
Q 008280 208 CSHLSSLQLGKQVHQLVF---------------------KSPL-------CKDTTALTPLISMYCKCG---DLEDACKLF 256 (571)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~---------------------~~g~-------~~~~~~~~~li~~y~~~g---~~~~A~~~~ 256 (571)
-...++.+++......++ +.|+ ...+.++..+.......+ ..+.....+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 111222222221111111 0110 011122222222111111 111111112
Q ss_pred HhhCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC
Q 008280 257 LEIQRKD------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330 (571)
Q Consensus 257 ~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 330 (571)
...+.++ ...|......+.+.++.++|...+.+..... +-....|......+...|..++|.+.|.... .
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ 712 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---A 712 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---h
Confidence 2222222 2357777788889999999998888876542 3344566666677888899999999998776 4
Q ss_pred CCCC-hHhHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 331 IAAK-PDHYTCMVDLLGRAGKLVEAVD--LIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 331 ~~~~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.+.|.+.|..+.++++.+|.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 5665 7788899999999998777777 77666 4444 4689999999999999999999999999999887764
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=3.9e-07 Score=91.41 Aligned_cols=216 Identities=15% Similarity=0.181 Sum_probs=117.3
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 008280 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251 (571)
Q Consensus 172 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 251 (571)
.+.+.|+++.|+..|-+.. .....+.+......+.+|..+++.+..... -..-|-.+.+-|+..|+++-
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 3444555555555543322 122233444455566666666666655432 22334556666777777777
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCC
Q 008280 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331 (571)
Q Consensus 252 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 331 (571)
|+++|-+.. .++-.|..|.+.|++++|.++-++.. |.......|..-..-....|.+.+|.++|-.+.
T Consensus 784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 777765432 34445666777777777766655442 222233344444445556666666666654332
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHH
Q 008280 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409 (571)
Q Consensus 332 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~ 409 (571)
.|+ .-|.+|-+.|..++.+++.++-. |+ ..|-.-+..-+-..|+...|+..|-++ . -|..-.
T Consensus 852 ~p~-----~aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~-d~kaav 915 (1636)
T KOG3616|consen 852 EPD-----KAIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------G-DFKAAV 915 (1636)
T ss_pred Cch-----HHHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------h-hHHHHH
Confidence 233 23566666666666666666552 23 234445555566666666666655443 2 345556
Q ss_pred HHHhhccChhHHHHHHH
Q 008280 410 NIYAAMKKWDDVARIRL 426 (571)
Q Consensus 410 ~~~~~~g~~~~a~~~~~ 426 (571)
++|...+.|++|.++-+
T Consensus 916 nmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 916 NMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhhhhhhHHHHHHHHh
Confidence 66666666666665543
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=5.4e-07 Score=82.77 Aligned_cols=191 Identities=12% Similarity=0.095 Sum_probs=101.4
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhh---CCCChhhHHHHHHHHHHcCChH
Q 008280 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI---QRKDVVTWNAMISGYAQHGKGE 281 (571)
Q Consensus 205 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~ 281 (571)
+..+...|+...++.....+++.. +.|...+..-..+|...|++..|+.=+... ...+....--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 334455677777777777777654 556667777777777777777776555443 3455666666666677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHHhcCcHHHHHHHHHHhHHhcCCCCC-----hHhHHHHHH
Q 008280 282 KALRLFDKMKDEGMKPDSIT----FVAL---------LLACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVD 343 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~ 343 (571)
.++...++-.+ +.||... |..| +......+.+.++.+-.+...+. .|. ...+..+-.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeee
Confidence 77777777665 3566532 1111 01112233444444444443331 222 111222333
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 344 LLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
.+...|++.+|++...+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+|++.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 344455555555554443 23333 44444445555555555555555555555555543
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.5e-08 Score=99.16 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=174.5
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHH
Q 008280 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKAL 284 (571)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 284 (571)
+.+.|++..|.-.|+..++.. |.+...|.-|....+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788889988999888886 67788999999999999998999998888775 35667777888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 008280 285 RLFDKMKDEGMKPDSITFVALL-----------LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 285 ~~~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 353 (571)
..|+.-+... |... .+. ........+....++|-.+....+..+|++++.+|.-.|.-.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999876543 1111 111 11222233445566676666655666899999999999999999999
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 354 AVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 354 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|.+.|+.+ ..+|+ ..+||.|...++...+.++|+..|.+++++.|..+. +.+.|+-.|...|.+++|.+.|-....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999988 55565 689999999999999999999999999999999988 999999999999999999999866553
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.7e-05 Score=73.38 Aligned_cols=375 Identities=12% Similarity=0.073 Sum_probs=223.6
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHH
Q 008280 12 VLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88 (571)
Q Consensus 12 l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~ 88 (571)
+.-+|-+.| ++++|..++.-+.+ ++...|-.|.-.+.-- |.+.+|..+-...++ ++..-..|...--+.|+-++
T Consensus 63 ia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 63 IAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHH
Confidence 345566788 99999999987764 5556666666666666 889999988777654 22223334444445566555
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCCh--hHHHH-HHHHHHhcCCHHHHHHHHhhCCC--CC-
Q 008280 89 ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV--VAWTA-MISGYMKFGKVDLAEKLFDEMPT--KN- 162 (571)
Q Consensus 89 A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-li~~~~~~g~~~~A~~~~~~~~~--~~- 162 (571)
-..+-..+.+. ..---+|.+..-..-.+.+|++++.+.+..++ ...|. +.-.|.|..-++-+.++++.-.+ ||
T Consensus 140 ~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 140 ILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 55544444321 12223344443344467778888877765544 22222 23355666666666555544331 22
Q ss_pred HHHHHHHHHHHHHc--CC---------------------------------hhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008280 163 LVTWNAMIAGYVEN--SW---------------------------------AEDGLKLLRMMIGLGIRPNASSLSSVLLG 207 (571)
Q Consensus 163 ~~~~~~li~~~~~~--g~---------------------------------~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 207 (571)
+.+-|.......+. |+ -+.|++++--+.+. -| ..-..++--
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iY 294 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIY 294 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hhhhhheee
Confidence 23333333332221 11 12233332222211 11 122233334
Q ss_pred HhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC-------CHHHHHHHHHhhCC-----CChhhHHHHHHHHH
Q 008280 208 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-------DLEDACKLFLEIQR-----KDVVTWNAMISGYA 275 (571)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-------~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 275 (571)
+.+.+++.+|..+...+. +.++.-|-.-.-.++..| .+.-|.+.|+-.-. ..+.--.+|.+.+.
T Consensus 295 yL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred ecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 667788888877765442 222222222222233333 35567777765543 23445667888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhH-HHHHHHHHHcCCHHHH
Q 008280 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEA 354 (571)
Q Consensus 276 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A 354 (571)
-..++++.+-.+.....-= ..|..--..+..|....|++.+|.++|-.+... .++ +..+| ..|...|.++|.++-|
T Consensus 371 L~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 8888999999888877653 334444446788999999999999999877531 223 34444 4667889999999999
Q ss_pred HHHHHhCCCCCCHhHHHHH-HHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 355 VDLIKKMPFKPQPAIFGTL-LSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
-+++-++....+..+...+ .+-|.+.+.+--|-+.|..+..++|...
T Consensus 448 W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 448 WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 9999988644445555444 4568899999999999999999998754
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=2.6e-06 Score=86.84 Aligned_cols=278 Identities=16% Similarity=0.138 Sum_probs=160.2
Q ss_pred HHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHHHH-HHHHHHHHHc-----C
Q 008280 109 SGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTW-NAMIAGYVEN-----S 177 (571)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~-----g 177 (571)
..+...|++++|++.+..-. .............|.+.|+.++|..+|..+.+ |+...| ..+..+.... .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 34455666666666665432 12223444555666666666666666666664 322333 3333333111 1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 008280 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256 (571)
Q Consensus 178 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 256 (571)
+.+...++|+++... -|.......+.-.+..... -..+..++...++.|+|+ +++.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 345556666666543 2333322222212222112 234455556666666543 5666666666555544444444
Q ss_pred HhhC------------------CCChhhH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCcH
Q 008280 257 LEIQ------------------RKDVVTW--NAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHAGLV 315 (571)
Q Consensus 257 ~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 315 (571)
.... .|....| .-+...|-..|++++|++++++.++. .|+. ..|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 4431 1122234 55567788889999999999988875 4554 4666677888899999
Q ss_pred HHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCC---CC--C----HhHH--HHHHHHHHhcCCHh
Q 008280 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF---KP--Q----PAIF--GTLLSACRVHKRLD 384 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~--~~l~~~~~~~g~~~ 384 (571)
++|.+.++.... --.-|-..-+-.+..+.|+|++++|.+++..... .| | ...| .....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999988888764 2233444555667777899999999888776621 11 1 1234 33456788889999
Q ss_pred HHHHHHHHHhc
Q 008280 385 LAEFAAMNLFN 395 (571)
Q Consensus 385 ~a~~~~~~~~~ 395 (571)
.|+..|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887776644
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=8.5e-07 Score=77.36 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 244 (571)
+...|.-+|.+.|++..|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+.+++.. +.+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556667777777777777777777653 2234466666666677777777777777766654 445566666777777
Q ss_pred hcCCHHHHHHHHHhhCC-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 008280 245 KCGDLEDACKLFLEIQR-K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 319 (571)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777766542 3 23456666666666666666666666665543 112334555555556666666666
Q ss_pred HHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 008280 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357 (571)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 357 (571)
.+++..... ..++.++.-..|..-.+.|+-+.|-+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 666655542 235555554555555555555544443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=4.2e-06 Score=83.40 Aligned_cols=296 Identities=11% Similarity=-0.053 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---C--CH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008280 133 VAWTAMISGYMKFGKVDLAEKLFDEMPT---K--NL-VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206 (571)
Q Consensus 133 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 206 (571)
..+..+...|...|+.+.+.+.+....+ + +. .........+...|++++|.+.+++..... +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3444555555555665555444444321 1 11 122223344566777777777777766542 223323321 11
Q ss_pred HHh----ccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCC
Q 008280 207 GCS----HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGK 279 (571)
Q Consensus 207 ~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 279 (571)
.+. ..+..+.+.+.+... ....+........+...+...|++++|...+++..+ .+...+..+...|...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 121 233344444444331 111122223334455677778888888888877653 345566777777888888
Q ss_pred hHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhH-H--HHHHHHHHcCCHHH
Q 008280 280 GEKALRLFDKMKDEGM-KPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-T--CMVDLLGRAGKLVE 353 (571)
Q Consensus 280 ~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~ 353 (571)
+++|...+++...... .|+. ..+..+...+...|++++|..++++........+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888888877765422 1222 234456667778888888888887764321111111111 1 22333333443222
Q ss_pred HHHH---HHhC----CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC-C--------CCCchhHHHHHHHHhhccC
Q 008280 354 AVDL---IKKM----PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-P--------ANAAGCYVQLANIYAAMKK 417 (571)
Q Consensus 354 A~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~~l~~~~~~~g~ 417 (571)
+.+. .... +.............++...|+.+.|...++.+.... . .... .....+.++...|+
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG-LPLAEALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh-HHHHHHHHHHHcCC
Confidence 2222 1111 111111222345566778888999998888775421 1 1233 55677778889999
Q ss_pred hhHHHHHHHHHHhCC
Q 008280 418 WDDVARIRLSMKENN 432 (571)
Q Consensus 418 ~~~a~~~~~~m~~~~ 432 (571)
+++|.+.+.......
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=3.4e-06 Score=86.03 Aligned_cols=285 Identities=14% Similarity=0.116 Sum_probs=193.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh----c-
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPT--KNLV-TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS----H- 210 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~----~- 210 (571)
...+...|++++|++.++.-.. .|.. ........+.+.|+.++|...|+.+++.+ |+...|...+..|. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4566789999999999987654 4554 45566788999999999999999999874 67777666665554 1
Q ss_pred -cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhhCCCCh-hhHHHHHHHHHHcCChHHHHHHH
Q 008280 211 -LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL-EDACKLFLEIQRKDV-VTWNAMISGYAQHGKGEKALRLF 287 (571)
Q Consensus 211 -~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 287 (571)
..+.+.-..+++.+...- |.......+.-.+.....+ ..+..++..+..+.+ .+++.+-..|....+..-...++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 235677788888776553 2222222222112211122 233444455555555 55666666676555555556666
Q ss_pred HHHHHc----C----------CCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCC
Q 008280 288 DKMKDE----G----------MKPDSI--TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGK 350 (571)
Q Consensus 288 ~~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 350 (571)
...... + -.|... ++..+...|...|++++|.++.+..++. .|+ ++.|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCC
Confidence 665432 1 123332 4456677888999999999999998863 455 8899999999999999
Q ss_pred HHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC--CCCCc----h--hHHHHHHHHhhccChhH
Q 008280 351 LVEAVDLIKKMP-FK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN--PANAA----G--CYVQLANIYAAMKKWDD 420 (571)
Q Consensus 351 ~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~--~~~~l~~~~~~~g~~~~ 420 (571)
+.+|.+.++... .. .|-..-+-.+..+.+.|+.++|+..+...-..+ |.... - .....+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999998872 22 344455556666789999999999988775543 32210 0 12467888999999999
Q ss_pred HHHHHHHHHh
Q 008280 421 VARIRLSMKE 430 (571)
Q Consensus 421 a~~~~~~m~~ 430 (571)
|++-|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9998876654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=7e-08 Score=91.44 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccCh-hHHHHHHH
Q 008280 350 KLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW-DDVARIRL 426 (571)
Q Consensus 350 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 426 (571)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|+++. +...++-+....|+. +.+.+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d-~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD-TLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH-HHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHhCCChhHHHHHHH
Confidence 466666666666 22355666777777777777777777777777777777777 777777777777777 44666666
Q ss_pred HHHh
Q 008280 427 SMKE 430 (571)
Q Consensus 427 ~m~~ 430 (571)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6655
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.5e-07 Score=89.29 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=150.5
Q ss_pred hcCCHHHHHHHHhhCCC--C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHH
Q 008280 144 KFGKVDLAEKLFDEMPT--K--NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219 (571)
Q Consensus 144 ~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 219 (571)
-.|++..++.-.+ ... + +......+.++|...|+++.++.- ..... .|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3566666654333 111 1 223444556667777766654432 22222 4544444444444433333344433
Q ss_pred HHHHHHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008280 220 VHQLVFKSPLC-KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298 (571)
Q Consensus 220 ~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 298 (571)
-+...+..... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 33333322222 23333344456677789999998888765 56667777888899999999999999999864 334
Q ss_pred HHHHHHHHHHHHh----cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 008280 299 SITFVALLLACNH----AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGT 372 (571)
Q Consensus 299 ~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 372 (571)
.+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++++. ...| ++.+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 344445554432 3468899999999876 45678888889999999999999999998876 3233 3567777
Q ss_pred HHHHHHhcCCH-hHHHHHHHHHhccCCCCC
Q 008280 373 LLSACRVHKRL-DLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 373 l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 401 (571)
++......|+. +.+.+.+.++....|+.+
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777788887 677888889888999875
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.85 E-value=2.1e-05 Score=78.71 Aligned_cols=421 Identities=12% Similarity=0.068 Sum_probs=233.6
Q ss_pred CCCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCCCHHHHHHHHhhCCCC---ChhhHHH
Q 008280 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDV-VSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNT 75 (571)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~ 75 (571)
|+.....+..++..|-. +++....+..+.+.. |.- .|. +|-.--..+.|+.++|......-... +.+.|..
T Consensus 4 ~~KE~~lF~~~lk~yE~--kQYkkgLK~~~~iL~k~~eHgesl-AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 4 SPKENALFRRALKCYET--KQYKKGLKLIKQILKKFPEHGESL-AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred ChHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhCCccchhH-HhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence 33444556666676643 255555555555543 111 111 11111112227778887777665543 4566887
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHH
Q 008280 76 MISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVD 149 (571)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 149 (571)
+.-.+-...++++|++.|..... .|...|.-+.-.-++.|+++.....-.+.. +.....|..+.-++.-.|+..
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888876642 356667766666677777776666544443 334466777777777778888
Q ss_pred HHHHHHhhCCC-----CCHHHHHHH------HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCchHHH
Q 008280 150 LAEKLFDEMPT-----KNLVTWNAM------IAGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLLGCSHLSSLQLG 217 (571)
Q Consensus 150 ~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a 217 (571)
.|..+.+...+ ++...+.-. .......|..++|++.+..-... ..|...+ .+-...+.+.+++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 88777766542 333322222 23455667777777766543322 1233322 2333445677788888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHhhCCCChh-hHHHHHHH-HHHcCCh-HHHHHHHHHHHHc
Q 008280 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-KLFLEIQRKDVV-TWNAMISG-YAQHGKG-EKALRLFDKMKDE 293 (571)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~-~~~~li~~-~~~~g~~-~~A~~~~~~m~~~ 293 (571)
..++..++... +.+...+-.+..++.+-.+.-++. .+|....+.-.. ..-.-+.. ....... +..-.++..+.+.
T Consensus 239 ~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 239 VKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 88888777764 333333444445554333333333 555544321000 00000000 1111122 2333445555666
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHH----HHHHHHHHhHHh--c-------CCCCChHh--HHHHHHHHHHcCCHHHHHHHH
Q 008280 294 GMKPDSITFVALLLACNHAGLVD----LGIQYFDSMVND--Y-------GIAAKPDH--YTCMVDLLGRAGKLVEAVDLI 358 (571)
Q Consensus 294 g~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~--~-------~~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 358 (571)
|++|--. .+.+.+-.-...+ .+..+...+... + .-+|.... +-.++..+-+.|+++.|...+
T Consensus 318 g~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6654322 3332222211111 111122221110 0 01455443 446778888999999999999
Q ss_pred HhC-CCCCCH-hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 359 KKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 359 ~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
+.. ...|+. ..|..=.+.+...|+.++|...++++.+++-.|.. .-..-+.-..++.+.++|.++.......|
T Consensus 395 d~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~-INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 395 DLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA-INSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH-HHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 877 445664 45666667788899999999999999998865542 22245566678899999999887776655
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2e-05 Score=82.26 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=122.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 342 (571)
.+..|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++....++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3557999999999999999999877543 36778999999999999999999999877665 5566555 4789
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHH
Q 008280 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 422 (571)
-+|++.+++.+-++++. -||..-...+..-|...|.++.|.-+|... . .|..|+..+...|.++.|.
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------S-N~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------S-NFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------h-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999887765 378888888999999999999998888654 4 7888999999999998887
Q ss_pred HHHHHHHhCCCccCC
Q 008280 423 RIRLSMKENNVVKMP 437 (571)
Q Consensus 423 ~~~~~m~~~~~~~~~ 437 (571)
..-++.......++.
T Consensus 1241 D~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEV 1255 (1666)
T ss_pred HHhhhccchhHHHHH
Confidence 766555443333333
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=6e-06 Score=84.25 Aligned_cols=355 Identities=15% Similarity=0.150 Sum_probs=224.6
Q ss_pred CCCChhhHHHHHH--HHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC-----------CC
Q 008280 34 PQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-----------KN 100 (571)
Q Consensus 34 ~~~~~~~~~~ll~--~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~d 100 (571)
..=|..|-.+++. .|+.. |+.+.|.+-.+-+. +..+|..|.+++.+.++++-|.-.+..|.. .|
T Consensus 722 e~Cd~~TRkaml~FSfyvti-G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTI-GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cccCHHHHHhhhceeEEEEe-ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3456667777765 35566 99998887766654 456899999999999999988888877742 12
Q ss_pred c-chHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-HHHHHHHHHHHHHcCC
Q 008280 101 S-VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-LVTWNAMIAGYVENSW 178 (571)
Q Consensus 101 ~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~ 178 (571)
. .+=........+.|.+++|+.+|++-.. |..|=..|-..|.+++|.++-+.-..-. -.||.....-+-..++
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 2 2223333445678999999999987653 3345567778899999988765432211 1256666666666778
Q ss_pred hhHHHHHHHHH----------HHCC---------CCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHH
Q 008280 179 AEDGLKLLRMM----------IGLG---------IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239 (571)
Q Consensus 179 ~~~A~~~~~~m----------~~~g---------~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 239 (571)
.+.|++.|++. +... -..|...|.....-.-..|+.+.|..+|..+.. |-++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 88888777643 1111 022344444455555667778888777776553 4456
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 008280 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG------ 313 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------ 313 (571)
+...+-.|+.++|-++-++ ..|..+...+...|-..|++.+|...|.+.+. |...|+.|-..+
T Consensus 945 VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 6666777888888777665 34666677788889999999999999987642 334444443333
Q ss_pred ---------cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-------------CCCCCHhHHH
Q 008280 314 ---------LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------------PFKPQPAIFG 371 (571)
Q Consensus 314 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~ 371 (571)
+.-.|.++|++. |. -...-+..|-++|.+.+|+++--+- ....|+...+
T Consensus 1014 nlal~s~~~d~v~aArYyEe~----g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL----GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc----ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 233344444433 11 1223456788899988888763221 1223455555
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhc----------------------cCCCC------C--chhHHHHHHHHhhccChhHH
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFN----------------------LNPAN------A--AGCYVQLANIYAAMKKWDDV 421 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~----------------------~~p~~------~--~~~~~~l~~~~~~~g~~~~a 421 (571)
.-..-+..+.++++|..++-.+.+ +.|.. . ...+..++..|.++|.+..|
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 555566677777777665533211 11211 1 12566889999999998887
Q ss_pred HHHH
Q 008280 422 ARIR 425 (571)
Q Consensus 422 ~~~~ 425 (571)
.+-|
T Consensus 1165 tKKf 1168 (1416)
T KOG3617|consen 1165 TKKF 1168 (1416)
T ss_pred HHHH
Confidence 7655
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=4.7e-06 Score=83.88 Aligned_cols=375 Identities=17% Similarity=0.151 Sum_probs=186.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhh--CCCCChhhHHHHHHHHHcCCCHHH
Q 008280 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR--LPIKDTASWNTMISGFVQKKNMAK 88 (571)
Q Consensus 11 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~--m~~~d~~~~~~li~~~~~~g~~~~ 88 (571)
+.++++...| +-+.|.++- ..+.... +.|+.|.+. |.+..|.+.-.. ....|......+..++.+..-+++
T Consensus 594 sy~q~l~dt~-qd~ka~elk----~sdgd~l-aaiqlyika-~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 594 SYLQALMDTG-QDEKAAELK----ESDGDGL-AAIQLYIKA-GKPAKAARAALNDEELLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHHHHHhcC-chhhhhhhc----cccCccH-HHHHHHHHc-CCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHh
Confidence 3445555555 555555432 2233322 346677777 777777655422 233455555556666666666777
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHH
Q 008280 89 ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA-WTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWN 167 (571)
Q Consensus 89 A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (571)
|-.+|+++..+| ..+..|-+-.-+.+|+++-+-..+..++. -.....-+...|+++.|...|-+... .-
T Consensus 667 agdlfeki~d~d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~ 736 (1636)
T KOG3616|consen 667 AGDLFEKIHDFD-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LI 736 (1636)
T ss_pred hhhHHHHhhCHH-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HH
Confidence 777777765543 22333333333555665555444333222 12223333444555555544433210 11
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 008280 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247 (571)
Q Consensus 168 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 247 (571)
--|.+......|.+|+.+++.++.... -.--|..+...|+..|+++.|+++|-.. ..++-.|+||.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 122334444555555555555444321 1223444445555555555555554322 12333455555555
Q ss_pred CHHHHHHHHHhhCCCC--hhhHHHHH--------------------------HHHHHcCChHHHHHHHHHHHHcCCCCC-
Q 008280 248 DLEDACKLFLEIQRKD--VVTWNAMI--------------------------SGYAQHGKGEKALRLFDKMKDEGMKPD- 298 (571)
Q Consensus 248 ~~~~A~~~~~~~~~~~--~~~~~~li--------------------------~~~~~~g~~~~A~~~~~~m~~~g~~p~- 298 (571)
++++|.++-++...|. ++.|-+-. ..|-++|..++.+++.++- .|+
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~-----h~d~ 880 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH-----HGDH 880 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-----Chhh
Confidence 5555555555444332 22333333 3344444444444333322 122
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-----HhHHHH
Q 008280 299 -SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ-----PAIFGT 372 (571)
Q Consensus 299 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-----~~~~~~ 372 (571)
..|-..+..-+...|++..|...|-+.. -|.+-+++|...+.+++|.++-+.-+- .| ...|..
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwak 949 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAK 949 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHH
Confidence 2244445555566666666666554332 245667778888888888877765421 11 233432
Q ss_pred HH------HHHHhcCCHhHHHHH-------------HHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 373 LL------SACRVHKRLDLAEFA-------------AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 373 l~------~~~~~~g~~~~a~~~-------------~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
-+ ..+.++|-.+.|+.. .+-..+ ...+. ++..++.-+...|++++|.+-+-+..+.+
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~-vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGE-VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCcc-chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 22 223455555555443 222211 22233 77888888899999999988776666544
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=6.1e-06 Score=74.58 Aligned_cols=402 Identities=14% Similarity=0.113 Sum_probs=203.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHcC
Q 008280 10 NSVLAGFAKQRGKLKDAQELFDKIPQP---DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNT-MISGFVQK 83 (571)
Q Consensus 10 ~~l~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~-li~~~~~~ 83 (571)
++.+..+.+.. ++.+|++++..-.+. +....+.|..+|... .++..|...|+++.. |...-|.. -...+-+.
T Consensus 14 taviy~lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 44555555565 677777777655542 333445555566666 677777777766543 22222211 12334455
Q ss_pred CCHHHHHHHHhhCCCC-CcchHHHHHH--HHHHcCChHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 008280 84 KNMAKARDLFLAMPEK-NSVSWSAMIS--GYIECGQLDKAVELFKVAP-VKSVVAWTAMISGYMKFGKVDLAEKLFDEMP 159 (571)
Q Consensus 84 g~~~~A~~~~~~m~~~-d~~~~~~li~--~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 159 (571)
+.+.+|+++...|.+. +...-..-+. ..-..+++..+..+.++.. +.+..+.+...-...+.|+.+.|.+-|+...
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 6666777776666542 2111111111 1223456666666666665 3444555555555556666666666666554
Q ss_pred C----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcch
Q 008280 160 T----KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 235 (571)
Q Consensus 160 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 235 (571)
+ .....||.-+ +..+.|+++.|+++..+....|++-.+..-.-+..--.....+..-..++...+ +..
T Consensus 172 qvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eA 243 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEA 243 (459)
T ss_pred hhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH-------HHH
Confidence 3 2334454333 333456666666666666666653221100000000000000000001111000 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 310 (571)
+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. ....||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 333344567889999999999999854 677766654322 23455555555555555543 34678999999999
Q ss_pred hcCcHHHHHHHHHHhHHhcCC-CCChHhHHHHHHHHHH-cCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHh--
Q 008280 311 HAGLVDLGIQYFDSMVNDYGI-AAKPDHYTCMVDLLGR-AGKLVEAVDLIKKMPFKPQ--PAIFGTLLSACRVHKRLD-- 384 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~-- 384 (571)
+..-++.|..++.+-... .. -.+...|+ |++++.- .-..++|++-++.+...-. .....+-+.- .++.+-+
T Consensus 322 KNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe-~r~~~dd~a 398 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE-ARHNRDDEA 398 (459)
T ss_pred hhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHH
Confidence 999999988887643211 00 11233333 3444443 3456666665554410000 0000011111 1222222
Q ss_pred --HHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 385 --LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 385 --~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.++.-+++.+++-- | +...-+..|.+..++..+.++|+.-.+
T Consensus 399 ~R~ai~~Yd~~LE~YL--P--VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKYL--P--VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH--H--HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22333344444321 1 566777888899999999999986654
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=1.8e-05 Score=79.06 Aligned_cols=385 Identities=12% Similarity=0.090 Sum_probs=240.4
Q ss_pred hhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHH---HHHHcCCCHHHHHHHHhhCCCC---CcchHHHHHHHHH
Q 008280 39 VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI---SGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYI 112 (571)
Q Consensus 39 ~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~ 112 (571)
..+..++..|-. +++...+++.+.+....+....+|. -.+...|+-++|.......... +.+.|..+.-.+-
T Consensus 9 ~lF~~~lk~yE~--kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCYET--KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHH--HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 345555665543 4666666666655544333322221 2234568899999888877653 5677998888888
Q ss_pred HcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHH
Q 008280 113 ECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 113 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
...++++|++.|+... +.|...+.-|.-.-++.|+++.....-....+ .....|...+.++.-.|++..|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998765 45567777776677778888777766665554 34568999999999999999999999
Q ss_pred HHHHHCC-CCCCHhHHHHHHH------HHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhh
Q 008280 187 RMMIGLG-IRPNASSLSSVLL------GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 259 (571)
Q Consensus 187 ~~m~~~g-~~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 259 (571)
++..+.. -.|+...+..... .....|.++.|.+.+...... +......-..-.+.+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 9888754 2456555543332 234567777776665543322 1122233345577889999999999999988
Q ss_pred CCC--ChhhHHH-HHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC
Q 008280 260 QRK--DVVTWNA-MISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFV-ALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 334 (571)
Q Consensus 260 ~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 334 (571)
..+ |...|.. +..++.+-.+.-+++ .+|....+. .|-...-. .=++........+..-.++..+.++ |+++-
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v 322 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV 322 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch
Confidence 764 4444444 344443333334444 666665443 12111111 1111112222223333444555443 55543
Q ss_pred hHhHHHHHHHHHHcCCHHH----HHHHHHhC-C------------CCCCHhHHHH--HHHHHHhcCCHhHHHHHHHHHhc
Q 008280 335 PDHYTCMVDLLGRAGKLVE----AVDLIKKM-P------------FKPQPAIFGT--LLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
. ..+...|-.-...+- +..+...+ + .+|....|.. ++..+-..|+++.|+...+.++.
T Consensus 323 f---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 F---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred h---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2 223333322111111 11122222 0 2466666654 56668899999999999999999
Q ss_pred cCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 396 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 396 ~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
--|.-+. .|..=+.++.+.|.+++|..++++..+...
T Consensus 400 HTPTliE-ly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 400 HTPTLIE-LYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCchHHH-HHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9998887 888889999999999999999998876543
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=1.2e-05 Score=90.66 Aligned_cols=354 Identities=11% Similarity=0.009 Sum_probs=222.9
Q ss_pred HHHHcCCCHHHHHHHHhhCCCCCcch--HHHHHHHHHHcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHH
Q 008280 78 SGFVQKKNMAKARDLFLAMPEKNSVS--WSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGKVDLA 151 (571)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~d~~~--~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 151 (571)
..+...|++.+|..........+... ...........|+++.+...++.+. ..++.........+...|++++|
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34555666666666655554332111 1122234455688888877777663 22333344455566778999998
Q ss_pred HHHHhhCCC----C----C--H--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCchH
Q 008280 152 EKLFDEMPT----K----N--L--VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA----SSLSSVLLGCSHLSSLQ 215 (571)
Q Consensus 152 ~~~~~~~~~----~----~--~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~ 215 (571)
...+..... . + . .....+...+...|++++|...+++....--..+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 888875421 1 1 1 12222344566899999999999988763111222 23344455567789999
Q ss_pred HHHHHHHHHHhCCC---CC--CcchHHHHHHHHHhcCCHHHHHHHHHhhCC-------CC----hhhHHHHHHHHHHcCC
Q 008280 216 LGKQVHQLVFKSPL---CK--DTTALTPLISMYCKCGDLEDACKLFLEIQR-------KD----VVTWNAMISGYAQHGK 279 (571)
Q Consensus 216 ~a~~~~~~~~~~g~---~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~ 279 (571)
.|...+.......- .+ .......+...+...|++++|...+++... ++ ...+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999888765311 11 123455667788899999999998876542 11 1234455666777899
Q ss_pred hHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhH-----HHHHHHHHHcCC
Q 008280 280 GEKALRLFDKMKDE--GMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLGRAGK 350 (571)
Q Consensus 280 ~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~ 350 (571)
+++|...+++.... ...+. ...+..+.......|+.++|.+.+.....-.........+ ...+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 99999999887542 11122 2344445667788999999999988875421111111111 112244566899
Q ss_pred HHHHHHHHHhCCCC--CCH----hHHHHHHHHHHhcCCHhHHHHHHHHHhccC------CCCCchhHHHHHHHHhhccCh
Q 008280 351 LVEAVDLIKKMPFK--PQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLN------PANAAGCYVQLANIYAAMKKW 418 (571)
Q Consensus 351 ~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~l~~~~~~~g~~ 418 (571)
.+.|.+.+...... ... ..+..+..++...|++++|...+++++... +.... ++..++.+|.+.|+.
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~-~~~~la~a~~~~G~~ 747 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR-NLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH-HHHHHHHHHHHcCCH
Confidence 99999998776211 111 124556677889999999999999987642 12223 677888999999999
Q ss_pred hHHHHHHHHHHhCC
Q 008280 419 DDVARIRLSMKENN 432 (571)
Q Consensus 419 ~~a~~~~~~m~~~~ 432 (571)
++|...+.+..+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887643
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=3e-05 Score=76.72 Aligned_cols=338 Identities=11% Similarity=0.060 Sum_probs=194.0
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHH--HHHHHHHHhcCCHHHH
Q 008280 77 ISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW--TAMISGYMKFGKVDLA 151 (571)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A 151 (571)
++.+.+.|++++|.....++.. .|...+..-+-+..+.+++++|+.+.+.-........ ..-..+..+.+..|+|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4567778888888888877753 3556677777788888888888877655432222111 1223334468888999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCC
Q 008280 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 230 (571)
Q Consensus 152 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 230 (571)
...++.....|..+...-...+.+.|++++|+++|+.+.+.+.+- |...-..++.+-.. -.+. .+......
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v~~v 170 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSVPEV 170 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhccCC
Confidence 888886555555566666777888899999999999887765322 11111222211111 1111 11111112
Q ss_pred C--CcchHHHHHHHHHhcCCHHHHHHHHHhhC--------CCCh----------hhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 231 K--DTTALTPLISMYCKCGDLEDACKLFLEIQ--------RKDV----------VTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 231 ~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
| +...+....-.+...|++.+|+++++... +.|. ..--.|.-.+...|+.++|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2 11222234455677899999999888762 1111 12334556677899999999999998
Q ss_pred HHcCCCCCHHH----HHHHHHHHHhcCcHHH--HHHHHHHhHHhc----------CCCCChHhHHHHHHHHHHcCCHHHH
Q 008280 291 KDEGMKPDSIT----FVALLLACNHAGLVDL--GIQYFDSMVNDY----------GIAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 291 ~~~g~~p~~~t----~~~ll~a~~~~g~~~~--a~~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
+... .+|... -|.|+ +...-.++-. .+..++...... .-.....--++++.+| .+..+.+
T Consensus 251 i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~ 326 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQV 326 (652)
T ss_pred HHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHH
Confidence 8875 445432 22222 2222222111 111222111100 0000111122334443 4566777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHH-H-hcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHH
Q 008280 355 VDLIKKMPFKPQPAIFGTLLSAC-R-VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~l~~~~-~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
.++-...|..--...+.+++..+ . +......+..++....+-+|.....+....+......|+|+.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77777775332234444454443 2 222577888888888888998843255566777889999999999998
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=7.2e-06 Score=85.54 Aligned_cols=412 Identities=13% Similarity=0.085 Sum_probs=233.1
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCC-----hhhHHHHHHH
Q 008280 8 NWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD-----TASWNTMISG 79 (571)
Q Consensus 8 ~~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d-----~~~~~~li~~ 79 (571)
.|..|..-|.... +...|.+.|+..-+ .|...+..+...|+.. .+++.|..+.-...+.+ ...|-..--.
T Consensus 494 af~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 4666666666666 66777777776654 4455667777777777 77777777643333221 1223333334
Q ss_pred HHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHH
Q 008280 80 FVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV---VAWTAMISGYMKFGKVDLAEK 153 (571)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~ 153 (571)
|.+.++..+|..-|+...+ .|...|..+..+|.+.|.+..|.++|.+....++ ....-..-+-+..|.+.+|..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566666666666665543 2555666677777777777777777755543332 222223334455566666666
Q ss_pred HHhhCCC---------CCH-HHHHHHHHHHHHcCChh-------HHHHHHHHHHHCCCCCCHhHHHHHHHHH--------
Q 008280 154 LFDEMPT---------KNL-VTWNAMIAGYVENSWAE-------DGLKLLRMMIGLGIRPNASSLSSVLLGC-------- 208 (571)
Q Consensus 154 ~~~~~~~---------~~~-~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~g~~pd~~t~~~ll~~~-------- 208 (571)
.+..+.. .+. .++--+...+.-.|-.. ++++.|.-........+...|..+-.+|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 6655431 111 12222222222222222 2222222222111111111111111111
Q ss_pred ---------------hccCch---H---HHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cC----CHHHHHHHHHhh
Q 008280 209 ---------------SHLSSL---Q---LGKQVHQLVFKSPLCKDTTALTPLISMYCK----CG----DLEDACKLFLEI 259 (571)
Q Consensus 209 ---------------~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~~ 259 (571)
-..+.. + .|-+.+- ....+..+...|..|+.-|.+ +| +...|...+...
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 111111 1 0111110 011112234555556555544 22 234566667654
Q ss_pred C---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC-Ch
Q 008280 260 Q---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KP 335 (571)
Q Consensus 260 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~ 335 (571)
. ..+...||.|.-. ...|.+.-|...|-+-.... +....+|..+...|....+++.|...|..... +.| +.
T Consensus 810 V~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~nl 884 (1238)
T KOG1127|consen 810 VSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLNL 884 (1238)
T ss_pred HHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh---cCchhh
Confidence 4 3577888887765 55677777777776665543 34667888888888999999999999988763 444 45
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHhHHHHH----------HHHHhccCC
Q 008280 336 DHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPAIFGTLLSACRVHKRLDLAEFA----------AMNLFNLNP 398 (571)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~----------~~~~~~~~p 398 (571)
..|..........|+.-++..+|..- +-.|+...|.....-...+|+.++-+.. +++.+.-.|
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 66666555566788888888888652 3346666666665566677776655443 444566789
Q ss_pred CCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 399 ANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 399 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+... +|...+....+.+.+.+|.+...+..
T Consensus 965 ~~~f-Ay~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 965 QLCF-AYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred chhH-HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9888 99999999999999999888776553
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.2e-06 Score=94.20 Aligned_cols=200 Identities=12% Similarity=0.116 Sum_probs=169.3
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 008280 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301 (571)
Q Consensus 230 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 301 (571)
|.....|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 556677888888999999999999999987631 34578888888888888889999999998742 22456
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQPAIFGTLLSAC 377 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 377 (571)
|..|...|.+.+.+++|.++++.|.++++ .....|...++.+.+..+-++|..++.++ |-+.........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999766 67789999999999999999999999876 3222344555566666
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
.+.|+.+++..+|+..+...|.... .|..+++.-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtD-lW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTD-LWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchh-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999999988 9999999999999999999999999988775
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=1.8e-05 Score=78.93 Aligned_cols=57 Identities=9% Similarity=-0.166 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC--CCC---C------HhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKMP--FKP---Q------PAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
..+..+...|+.++|..+++.+. ... . +.......-++...|+.++|...+..++..
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555566677777777766651 001 1 111112222356778888888888777553
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.3e-05 Score=78.59 Aligned_cols=382 Identities=14% Similarity=0.083 Sum_probs=235.0
Q ss_pred HHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHcCCCHHH
Q 008280 15 GFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KD-TASWNTMISGFVQKKNMAK 88 (571)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~ 88 (571)
+....| +++.|...|-.... +|.+.|+.=..+|++. |++++|++=-.+-.+ |+ ..-|+-...++.-.|++++
T Consensus 11 aa~s~~-d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~-~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSG-DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL-GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccc-cHHHHHHHHHHHHccCCCccchhcchHHHHHHH-hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 334556 99999999976543 6778888888899999 999999876655443 33 3468888888888999999
Q ss_pred HHHHHhhCCCC---CcchHHHHHHHHHHcCChHHHHHHHhhC-----CCCCh--------hHHHHHHHH----------H
Q 008280 89 ARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFKVA-----PVKSV--------VAWTAMISG----------Y 142 (571)
Q Consensus 89 A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~--------~~~~~li~~----------~ 142 (571)
|+.-|.+-.+. |...++-+..++... . .+.+.|..- +..++ ..|..++.. |
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999987653 445566666665111 0 011111100 00010 112222211 1
Q ss_pred HhcCCHHHHHHHHhhC----------------CCC------------CH----------HHHHHHHHHHHHcCChhHHHH
Q 008280 143 MKFGKVDLAEKLFDEM----------------PTK------------NL----------VTWNAMIAGYVENSWAEDGLK 184 (571)
Q Consensus 143 ~~~g~~~~A~~~~~~~----------------~~~------------~~----------~~~~~li~~~~~~g~~~~A~~ 184 (571)
..-.++..|.-.+... ..| |. .-.-.+.++..+..++..|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111122222222111 001 11 135567888888889999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCC--C----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 008280 185 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK--D----TTALTPLISMYCKCGDLEDACKLFLE 258 (571)
Q Consensus 185 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~li~~y~~~g~~~~A~~~~~~ 258 (571)
-+....... -+..-++....++...|........-...++.|... + ......+..+|.+.++++.|...|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 998888754 333344555566777777777766666655554211 0 11122244577788889999999987
Q ss_pred hCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHh
Q 008280 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337 (571)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 337 (571)
...+... -....+....++++...+...-. .|... -...-.+.+.+.|++..|...|.++++. .+.|...
T Consensus 324 aLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~l 394 (539)
T KOG0548|consen 324 ALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARL 394 (539)
T ss_pred HhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHH
Confidence 5432111 11122333455555555544432 33332 1222356677889999999999998874 3666889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
|....-+|.+.|.+..|++-.+.. ...|+ ...|..=..++....+++.|...|.+.++.+|++.. ....+..++.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e-~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE-AIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHH
Confidence 999999999999999988766555 23344 345555566677778999999999999999998875 5555555544
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=7.1e-06 Score=75.61 Aligned_cols=280 Identities=12% Similarity=0.085 Sum_probs=168.3
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCCCcchHHHHH---HHHHHcCChHHHHHHHhhCCCCChhHHHHH---HHHHHhcCCHHH
Q 008280 77 ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI---SGYIECGQLDKAVELFKVAPVKSVVAWTAM---ISGYMKFGKVDL 150 (571)
Q Consensus 77 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 150 (571)
-+.+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-+...++.-+..+.+- ...+.+.|.++.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 33444445555555555555554444444332 234445555445444444432222222221 234455556666
Q ss_pred HHHHHhhCCCCCH----------------HHH--HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 008280 151 AEKLFDEMPTKNL----------------VTW--NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212 (571)
Q Consensus 151 A~~~~~~~~~~~~----------------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 212 (571)
|..-|+.+.+.++ ..| ...+..+...|+...|+.....+++.. +.|...+..-..+|...|
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcC
Confidence 5555555442111 011 223444556777778887777777642 346666666667777778
Q ss_pred chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChh------hHHHH---------HHHHHHc
Q 008280 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV------TWNAM---------ISGYAQH 277 (571)
Q Consensus 213 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~------~~~~l---------i~~~~~~ 277 (571)
.+..|..=+..+-+.. ..+....--+-..+...|+.+.++....+..+-|+. .|..+ +......
T Consensus 204 e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8887777777666654 334445555667777788888887777776643221 22211 2234567
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPDSITFV---ALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 353 (571)
+++.++++-.+...+.......++++ .+-.++...|++.+|++...+++. +.|+ +.++.--.++|.-...+++
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHH
Confidence 88888888888877654332334443 344566778999999999998874 5665 8888888899999999999
Q ss_pred HHHHHHhC
Q 008280 354 AVDLIKKM 361 (571)
Q Consensus 354 A~~~~~~~ 361 (571)
|+.-|+..
T Consensus 360 AI~dye~A 367 (504)
T KOG0624|consen 360 AIHDYEKA 367 (504)
T ss_pred HHHHHHHH
Confidence 99999887
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4.4e-06 Score=75.46 Aligned_cols=302 Identities=13% Similarity=0.156 Sum_probs=186.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHHHHHH-HHHHHHHcC
Q 008280 104 WSAMISGYIECGQLDKAVELFKVAPVK---SVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNA-MIAGYVENS 177 (571)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 177 (571)
+++.+..+.+..++++|++++..-.+. +......|..+|....++..|-..++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 566666677788888888887655433 345566777888888889999888888764 33333332 245667788
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 008280 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLG--CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255 (571)
Q Consensus 178 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 255 (571)
.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+.++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 888898888877642 222221111222 234566667766666654322 333444455555677777777777
Q ss_pred HHhhCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHhcCcHHHHHHHHHHhH
Q 008280 256 FLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA-----LLLACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 256 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----ll~a~~~~g~~~~a~~~~~~~~ 326 (571)
|+...+ .....||.-+. ..+.|+++.|+++..++++.|++-.+. ++. .+.+ ...|+ ...+..+.
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgN---t~~lh~Sa- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGN---TLVLHQSA- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccc---hHHHHHHH-
Confidence 776654 24455665444 334567777777777777777652221 110 0000 00000 00001000
Q ss_pred HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
-+..++.-...+.+.|+++.|.+.+..|| ...|++|...+.-. -..+++..+.+-+.-+++++|-++.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChH
Confidence 01223333445678899999999999995 23566776654322 2456677777778888899997777
Q ss_pred hhHHHHHHHHhhccChhHHHHHHHH
Q 008280 403 GCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 403 ~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
+|..++-.|++..-++-|..++.+
T Consensus 312 -TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 -TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred -HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 999999999999999999888754
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=6.9e-05 Score=84.66 Aligned_cols=345 Identities=10% Similarity=-0.039 Sum_probs=218.3
Q ss_pred CCHHHHHHHHhhCCCCChhh--HHHHHHHHHcCCCHHHHHHHHhhCCC----CCcchHHHHHHHHHHcCChHHHHHHHhh
Q 008280 53 DDVVAAFDFFQRLPIKDTAS--WNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKV 126 (571)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~ 126 (571)
|++.+|..........+... ...........|+++.+..+++.++. .+..........+...|++++|...+..
T Consensus 355 g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 355 GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555554444332211 11122344567888888888887742 2344444455566778999999888765
Q ss_pred CC----CC----Ch----hHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCH----HHHHHHHHHHHHcCChhHHHHHH
Q 008280 127 AP----VK----SV----VAWTAMISGYMKFGKVDLAEKLFDEMPT----KNL----VTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 127 ~~----~~----~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
.. .. +. .....+...+...|++++|...+++... .+. ..++.+...+...|++++|...+
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~ 514 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMM 514 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 42 11 11 1222334566789999999998877532 222 34566777788899999999999
Q ss_pred HHHHHCCC---CCC--HhHHHHHHHHHhccCchHHHHHHHHHHHhC----CCCC---CcchHHHHHHHHHhcCCHHHHHH
Q 008280 187 RMMIGLGI---RPN--ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCK---DTTALTPLISMYCKCGDLEDACK 254 (571)
Q Consensus 187 ~~m~~~g~---~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~y~~~g~~~~A~~ 254 (571)
.+.....- .+. ..++..+...+...|+++.|...++..... +... ....+..+...+...|++++|..
T Consensus 515 ~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 515 QQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88765211 111 224445566678899999999998876652 2211 12234456677778899999998
Q ss_pred HHHhhCC------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHhcCcHHHHHH
Q 008280 255 LFLEIQR------K--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITF-----VALLLACNHAGLVDLGIQ 320 (571)
Q Consensus 255 ~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~a~~ 320 (571)
.+++... + ....+..+...+...|++++|...+.+....... .....+ ...+..+...|+.+.+.+
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 8887532 1 1334555667788899999999999887542111 111111 111234455789999999
Q ss_pred HHHHhHHhcCCCCCh----HhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HhHHHHHHHHHHhcCCHhHHHH
Q 008280 321 YFDSMVNDYGIAAKP----DHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ-PAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 321 ~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
.+...... ..... ..+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|..
T Consensus 675 ~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 675 WLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87765431 11111 11346677888999999999988876 22222 2456667778899999999999
Q ss_pred HHHHHhccCCC
Q 008280 389 AAMNLFNLNPA 399 (571)
Q Consensus 389 ~~~~~~~~~p~ 399 (571)
.+.+++++...
T Consensus 753 ~L~~Al~la~~ 763 (903)
T PRK04841 753 VLLEALKLANR 763 (903)
T ss_pred HHHHHHHHhCc
Confidence 99999886543
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=3.6e-06 Score=78.37 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=120.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 008280 232 DTTALTPLISMYCKCGDLEDACKLFLEIQR--KD-V---VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS--ITFV 303 (571)
Q Consensus 232 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 303 (571)
....+..++..|.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344566677778888888888888887654 22 1 35677788888888888888888888764322111 1344
Q ss_pred HHHHHHHhc--------CcHHHHHHHHHHhHHhcCCCCCh-HhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 008280 304 ALLLACNHA--------GLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374 (571)
Q Consensus 304 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 374 (571)
.+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHHH
Confidence 444445443 6788888888888764 3332 222222111 1111100 01122456
Q ss_pred HHHHhcCCHhHHHHHHHHHhccCCCCC---chhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 375 SACRVHKRLDLAEFAAMNLFNLNPANA---AGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
..+...|++++|+..++++++..|+.+ . .+..++.+|.+.|++++|..+++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEE-ALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 678899999999999999999877643 5 7889999999999999999999887654
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.8e-05 Score=77.51 Aligned_cols=365 Identities=13% Similarity=0.132 Sum_probs=216.2
Q ss_pred HHcCCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHHcCChHHHH
Q 008280 48 ILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE--KN-SVSWSAMISGYIECGQLDKAV 121 (571)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~ 121 (571)
.+.. |+++.|+..|.+.. ++|-+.|..-..+|++.|++++|++=-.+-.+ |+ ...|+-...++.-.|++++|+
T Consensus 12 a~s~-~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSS-GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hccc-ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 3455 99999999998743 45788899999999999999999886665543 44 357999999999999999999
Q ss_pred HHHhhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhh------CCCCCH--------HHHHHHHHHHHHcC-------
Q 008280 122 ELFKVAPVK---SVVAWTAMISGYMKFGKVDLAEKLFDE------MPTKNL--------VTWNAMIAGYVENS------- 177 (571)
Q Consensus 122 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~~--------~~~~~li~~~~~~g------- 177 (571)
..|.+.+.. +....+.|.+++.... .+.+.|.. +. .++ ..|..++..+-++.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999998744 4477888888871110 11111111 00 011 12333333322211
Q ss_pred C---hhHHHHHHH-----HHHHCC-------CCC------------C----------HhHHHHHHHHHhccCchHHHHHH
Q 008280 178 W---AEDGLKLLR-----MMIGLG-------IRP------------N----------ASSLSSVLLGCSHLSSLQLGKQV 220 (571)
Q Consensus 178 ~---~~~A~~~~~-----~m~~~g-------~~p------------d----------~~t~~~ll~~~~~~~~~~~a~~~ 220 (571)
+ ...|.-.+. .+...| ..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0 111111110 000001 011 0 01122334444444555555555
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCCh----------hhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV----------VTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 221 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
+....... .++.-++....+|...|.+......-+...+... .+...+..+|.+.++++.|+..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 55555543 4455555566666666666655555444332211 11222333455556666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChH-hHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 008280 291 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD-HYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QP 367 (571)
Q Consensus 291 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 367 (571)
...-..|+..+ +....+++........ -+.|... -...-..-+.+.|++..|++.|.++ ...| |.
T Consensus 325 Lte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 44333332211 1122233333332221 1223211 1111245577889999999999887 2234 56
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
..|....-+|.+.|++..|+.-.+..++++|+... .|..=+.++....+|++|.+.|.+-.+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k-gy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK-AYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78888888899999999999999999999999888 88888889999999999999998776644
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=5.3e-05 Score=77.61 Aligned_cols=341 Identities=11% Similarity=0.111 Sum_probs=179.6
Q ss_pred cchHHHHHHHHHhCCCCHHHHHHHHhhCCC-----------CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHH
Q 008280 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----------PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN 74 (571)
Q Consensus 6 ~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~ 74 (571)
-.+|..+.++|.+.. +++-|.-.+..|.. .|..--.+-+..++-..|-+++|..+|++-.. |.
T Consensus 757 ~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~D 830 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YD 830 (1416)
T ss_pred hHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HH
Confidence 457888888888888 88888777776642 11111111122222222777777777776543 33
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCCC-CcchHHHHHHHHHHcCChHHHHHHHhhCC-----------------------CC
Q 008280 75 TMISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVELFKVAP-----------------------VK 130 (571)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------------~~ 130 (571)
.|=..|-..|.+++|.++-+.=.+- =..||..-..-+-..++.+.|++.|++.. ..
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence 3444555666777776665432211 12245555555555666666666665543 11
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------------CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 008280 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMP------------------------TKNLVTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
|...|.-.....-..|+++.|+.+|.... ..|..+...|...|-..|++.+|..+|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22222222223333455555555554432 235556667777787888888888877
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcc---------------CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 008280 187 RMMIGLGIRPNASSLSSVLLGCSHL---------------SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251 (571)
Q Consensus 187 ~~m~~~g~~pd~~t~~~ll~~~~~~---------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 251 (571)
.+.+. |...|..|-.. .+.-.|-++|++. |. -..-.+..|-|.|.+.+
T Consensus 991 TrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 991 TRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHH
Confidence 76542 33333332221 1222233333322 10 11224456677777777
Q ss_pred HHHHHHhhC--------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 008280 252 ACKLFLEIQ--------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317 (571)
Q Consensus 252 A~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 317 (571)
|+++-=+-. ..|+...+.-..-+..+.++++|..++-..++ |...+..|...|- .-
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~v 1123 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RV 1123 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-ch
Confidence 765521111 12455555556666677777777777765543 3445555554432 22
Q ss_pred HHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhH
Q 008280 318 GIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 318 a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 385 (571)
..++-+.|.-...-.|+ ......+.+.+.++|.+..|.+-|.+.+.+ . .-++++.+.|+.++
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l----~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--L----SAMRALLKSGDTQK 1189 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--H----HHHHHHHhcCCcce
Confidence 22333333211112222 335566778888999999998888887532 1 22344556666554
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00013 Score=76.59 Aligned_cols=288 Identities=16% Similarity=0.187 Sum_probs=153.8
Q ss_pred HHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 008280 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRM 188 (571)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 188 (571)
..+...+-+++|..+|+... .+....+.|+. .-+.++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 33444555666666665442 12222222222 12344444444444333 23566666666666666666655532
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC-------
Q 008280 189 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR------- 261 (571)
Q Consensus 189 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------- 261 (571)
. .|+..|..++..+.+.|.+++-..++..+++..-+|. +-+.|+-+|++.+++.+-+++...-.-
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVG 1201 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHh
Confidence 1 2445566666666666666666666665555543333 334566666666665555444321100
Q ss_pred ----------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 008280 262 ----------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325 (571)
Q Consensus 262 ----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 325 (571)
.++.-|..|...+...|++..|.+.-++. .+..||..+-.+|...+.+..| +|
T Consensus 1202 drcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----Qi 1270 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QI 1270 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----Hh
Confidence 14456777888888888888887665543 2566888888888877766544 23
Q ss_pred HHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc-cC-CC--
Q 008280 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFN-LN-PA-- 399 (571)
Q Consensus 326 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-p~-- 399 (571)
.- .++-...+-..-|+.-|-..|.+++-+.+++.. +.+ .....|.-|.-.|.+-+ +++..+.++-... ++ |.
T Consensus 1271 CG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKvi 1348 (1666)
T KOG0985|consen 1271 CG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVI 1348 (1666)
T ss_pred cC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHH
Confidence 21 123334555667888888999999988888765 322 22344555544444332 2222222221111 00 10
Q ss_pred ---CCchhHHHHHHHHhhccChhHHHH
Q 008280 400 ---NAAGCYVQLANIYAAMKKWDDVAR 423 (571)
Q Consensus 400 ---~~~~~~~~l~~~~~~~g~~~~a~~ 423 (571)
+..+.|..|...|.+-..|+.|.-
T Consensus 1349 RA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 011256666666766666666543
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=2.7e-06 Score=76.19 Aligned_cols=119 Identities=6% Similarity=0.063 Sum_probs=97.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH-HhcCC--HhHH
Q 008280 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC-RVHKR--LDLA 386 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a 386 (571)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777777665 34667888999999999999999999999887 3334 467777777764 67777 5999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 387 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
..+++++++.+|+++. ++..|+..+...|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~-al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVT-ALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999998 999999999999999999999999987544
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=2.4e-05 Score=81.81 Aligned_cols=421 Identities=14% Similarity=0.091 Sum_probs=213.8
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCCCCh---hhHHHH--HHHHHcCCCCHHHHHHHHhhCCC---CChhhHH
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV---VSYNIM--LSCILLNSDDVVAAFDFFQRLPI---KDTASWN 74 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l--l~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~ 74 (571)
+.|...+..+...|+... .++.|..+.-...+.+. ..||.. --.|... ++...|..-|+...+ .|...|.
T Consensus 523 atdaeaaaa~adtyae~~-~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~n~W~ 600 (1238)
T KOG1127|consen 523 ATDAEAAAASADTYAEES-TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDYNLWL 600 (1238)
T ss_pred chhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhHHHHH
Confidence 445667778888888888 88888877433333211 223322 2234445 778888877776554 4667788
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCCCCcch-HHH--HHHHHHHcCChHHHHHHHhhCC-----------------------
Q 008280 75 TMISGFVQKKNMAKARDLFLAMPEKNSVS-WSA--MISGYIECGQLDKAVELFKVAP----------------------- 128 (571)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~d~~~-~~~--li~~~~~~g~~~~A~~~~~~~~----------------------- 128 (571)
.+..+|..+|++..|+++|.+...-++.. |.. ....-+..|.+.+|+..+....
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888888888888888887764422221 111 1122334566666655554332
Q ss_pred -----------------------------CCChhHHHH-------------------HHHHHHh----cCCH---H---H
Q 008280 129 -----------------------------VKSVVAWTA-------------------MISGYMK----FGKV---D---L 150 (571)
Q Consensus 129 -----------------------------~~~~~~~~~-------------------li~~~~~----~g~~---~---~ 150 (571)
..+...|-. ++..+.+ .+.. | -
T Consensus 681 ~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~L 760 (1238)
T KOG1127|consen 681 SAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFL 760 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHH
Confidence 001111111 1111111 0000 0 0
Q ss_pred HHHHHhhCC--CCCHHHHHHHHHHHHH----cC----ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHH
Q 008280 151 AEKLFDEMP--TKNLVTWNAMIAGYVE----NS----WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 220 (571)
Q Consensus 151 A~~~~~~~~--~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 220 (571)
+.+.+-.-. ..+..+|..++..|.+ .| +...|+..+.+..+. ..+...+-..+...+..|++.-+..-
T Consensus 761 g~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHC 838 (1238)
T KOG1127|consen 761 GYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHC 838 (1238)
T ss_pred HHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhh
Confidence 000000000 0234567777766655 22 234677888877764 33334344444445666677666665
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHH--H--Hc
Q 008280 221 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKM--K--DE 293 (571)
Q Consensus 221 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~ 293 (571)
|-..+... +....+|..+.-.+.+..+++-|...|..... .|...|-.+....-..|+.-+++.+|..- . ..
T Consensus 839 fIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~ 917 (1238)
T KOG1127|consen 839 FIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE 917 (1238)
T ss_pred hhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc
Confidence 55544443 55677888888888888899999888887764 24556655555455555555555555441 1 11
Q ss_pred CCCCCH--------------------------------------------HHHHHHHHHHHhcCcHHHHHHHHHHhHHhc
Q 008280 294 GMKPDS--------------------------------------------ITFVALLLACNHAGLVDLGIQYFDSMVNDY 329 (571)
Q Consensus 294 g~~p~~--------------------------------------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 329 (571)
|-.|+- ..|........+.+.+..|.....+...-.
T Consensus 918 gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglL 997 (1238)
T KOG1127|consen 918 GKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLL 997 (1238)
T ss_pred cccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 233333333333333333333333222110
Q ss_pred CCCCChHhHHH----HHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc--h
Q 008280 330 GIAAKPDHYTC----MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA--G 403 (571)
Q Consensus 330 ~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~ 403 (571)
..+-+...|+. +...+...|.++.|..-+...+..-+..+-.+-+.. .-.++++++.+.|++++.+.-++.. .
T Consensus 998 e~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vv 1076 (1238)
T KOG1127|consen 998 ELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVV 1076 (1238)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhh
Confidence 11122222221 222333344555444444433322222222222222 3467889999999999875433322 1
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
....++.....++.-+.|...+-+..
T Consensus 1077 Ll~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1077 LLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhHHHHHHHhhcccchHHHHHHHHHH
Confidence 33345555566777777777654444
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.00037 Score=68.52 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc---CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 008280 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255 (571)
Q Consensus 179 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 255 (571)
.+++..+++.....-..-+..+|..+...--.. ...+....+++.++..-...-..+|..+++.-.|..-+..|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666777665533333445554444322111 23566667777776654444456778888888888889999999
Q ss_pred HHhhCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhc
Q 008280 256 FLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDY 329 (571)
Q Consensus 256 ~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 329 (571)
|.+..+. ++...++++.-|+. ++.+-|.++|+--.+. -+|.. -....+.-+++.++-..++.+|++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 9988742 67788888887764 6778999999875443 23433 3345677778889999999999999886
Q ss_pred CCCCC--hHhHHHHHHHHHHcCCHHHHHHHHHhC----C--CCCCHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 330 GIAAK--PDHYTCMVDLLGRAGKLVEAVDLIKKM----P--FKPQPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 330 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
+++|+ ...|..+++-=..-|++..+.++-+++ + ..+....-..+++-|...+.+.--..-+
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 66666 678999999889999999998887766 2 2222233444556666666554433333
No 111
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=3.4e-05 Score=74.25 Aligned_cols=163 Identities=9% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCC---CChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 008280 249 LEDACKLFLEIQR---KDVVTWNAMISGYAQHGKG--EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 323 (571)
Q Consensus 249 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 323 (571)
+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++.+... -|..+|.....++.+.|+++++++.+.
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444444332 2333444443333334432 344555555554331 234455555555555555555555555
Q ss_pred HhHHhcCCCCChHhHHHHHHHHHHc---CC----HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----CCHhHHHHHH
Q 008280 324 SMVNDYGIAAKPDHYTCMVDLLGRA---GK----LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH----KRLDLAEFAA 390 (571)
Q Consensus 324 ~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~ 390 (571)
++++. -+.+...|+.....+.+. |. .++++++..++ ...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 55542 122334444433333332 21 23445554333 3233 457888888887763 3456688888
Q ss_pred HHHhccCCCCCchhHHHHHHHHhhc
Q 008280 391 MNLFNLNPANAAGCYVQLANIYAAM 415 (571)
Q Consensus 391 ~~~~~~~p~~~~~~~~~l~~~~~~~ 415 (571)
.++...+|+.+. ++..|+++|...
T Consensus 245 ~~~~~~~~~s~~-al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVF-ALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHH-HHHHHHHHHHhh
Confidence 888888888877 888999999864
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=2.5e-06 Score=72.19 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=82.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 008280 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF 363 (571)
Q Consensus 285 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 363 (571)
.+|++..+. .|+. +.....++...|++++|...|..... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344554442 3443 44456667777777777777777764 23445667777777777788888888777776 22
Q ss_pred C-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 364 K-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 364 ~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
. .+...|..+..++...|++++|+..++++++..|+++. .+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~-~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS-WSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHH
Confidence 2 34567777777788888888888888888888888876 6666665543
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=4.1e-06 Score=82.61 Aligned_cols=247 Identities=13% Similarity=0.078 Sum_probs=171.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 008280 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250 (571)
Q Consensus 171 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 250 (571)
.-+.+.|+..+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567778888877777777653 3355677777777777777777888777777765 556677777778888888888
Q ss_pred HHHHHHHhhCCCC-hhhHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 008280 251 DACKLFLEIQRKD-VVTWNAMI---------SGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 251 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 319 (571)
.|.+.++.-.... ...|.... ..+..........++|-++. ..+..+|......|.-.|--.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888877643110 00000000 11111223345556666664 4454467777777777788899999999
Q ss_pred HHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccC
Q 008280 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397 (571)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (571)
..|+..+.. -+.|...|+.|...++...+.++|+..|++. ..+|+ +.++..|.-+|...|.+++|...|-.++.+.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999863 3445779999999999999999999999988 67788 4688889999999999999999999888765
Q ss_pred CCCC---------chhHHHHHHHHhhccChhHH
Q 008280 398 PANA---------AGCYVQLANIYAAMKKWDDV 421 (571)
Q Consensus 398 p~~~---------~~~~~~l~~~~~~~g~~~~a 421 (571)
+... ...|..|=.++.-.++.|-+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 5411 11445555555555554433
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=4e-06 Score=70.98 Aligned_cols=96 Identities=10% Similarity=-0.125 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 414 (571)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|+++. ++..++.++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~-a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE-PVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHH
Confidence 4666788899999999999999987 3334 5789999999999999999999999999999999999 99999999999
Q ss_pred ccChhHHHHHHHHHHhCCC
Q 008280 415 MKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 415 ~g~~~~a~~~~~~m~~~~~ 433 (571)
.|+.++|...++...+...
T Consensus 105 ~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 9999999999998876443
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.9e-07 Score=55.66 Aligned_cols=33 Identities=33% Similarity=0.587 Sum_probs=23.9
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC
Q 008280 228 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260 (571)
Q Consensus 228 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 260 (571)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777763
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.001 Score=65.63 Aligned_cols=388 Identities=12% Similarity=0.139 Sum_probs=220.2
Q ss_pred CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CCcchHHHHHHH
Q 008280 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTMISGFVQKKNMAKARDLFLAMPE--KNSVSWSAMISG 110 (571)
Q Consensus 36 ~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~ 110 (571)
-|+.+|+.||.-+ +. ...+++++.++++..+ ....|..-|..-....+++....+|.+-.. -+...|..-+.-
T Consensus 18 ~di~sw~~lire~-qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 18 YDIDSWSQLIREA-QT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred ccHHHHHHHHHHH-cc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 4788999999964 44 5899999999998753 566799999999999999999999987643 467777776654
Q ss_pred HHH-cCChHHHH----HHHhhC------CCCChhHHHHHHHH---------HHhcCCHHHHHHHHhhCCC----------
Q 008280 111 YIE-CGQLDKAV----ELFKVA------PVKSVVAWTAMISG---------YMKFGKVDLAEKLFDEMPT---------- 160 (571)
Q Consensus 111 ~~~-~g~~~~A~----~~~~~~------~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~---------- 160 (571)
--+ .|+...++ +.|+-. ...+-..|+..+.. |..+.+++..+++++++..
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 333 23333322 222221 22333456665543 4445577788888888763
Q ss_pred CCHHHHHHHHHHHH-------HcCChhHHHHHHHHHHH--CCCCCCHhH---------------HHHHHHH---------
Q 008280 161 KNLVTWNAMIAGYV-------ENSWAEDGLKLLRMMIG--LGIRPNASS---------------LSSVLLG--------- 207 (571)
Q Consensus 161 ~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~g~~pd~~t---------------~~~ll~~--------- 207 (571)
+|-..|..=|+... +...+..|.++++++.. .|+.....+ |..+|.-
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 12222222222111 12234455555555532 232111111 1111110
Q ss_pred ----------------------------------------HhccCc-------hHHHHHHHHHHHhCCCCCCcchHHHHH
Q 008280 208 ----------------------------------------CSHLSS-------LQLGKQVHQLVFKSPLCKDTTALTPLI 240 (571)
Q Consensus 208 ----------------------------------------~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li 240 (571)
+...|+ .+++..+++..+..-...+..+|.++.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 122223333222211111222222211
Q ss_pred HHHHhcC---CHHHHHHHHHhhCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 008280 241 SMYCKCG---DLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHA 312 (571)
Q Consensus 241 ~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 312 (571)
+.--..- ..+.....++++.. .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ ..
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cs 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CS 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hc
Confidence 1100000 12222223333221 123456667776667777888888999988887777 444555555544 45
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHhHHH
Q 008280 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQ--PAIFGTLLSACRVHKRLDLAE 387 (571)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~ 387 (571)
++.+-|.++|+.=.+++| .++.--...++-+...++-..|..+|++. ...|+ ..+|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 788888999988777543 34455567788888888888888888887 12333 478999988888889988888
Q ss_pred HHHHHHhccCCC--C-CchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 388 FAAMNLFNLNPA--N-AAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 388 ~~~~~~~~~~p~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
.+-++....-|. . +...-..+.+-|.=.+.+..-..-++.|
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 888877665551 1 1113456666676666665544444444
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=8.4e-06 Score=72.84 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhc
Q 008280 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVH 380 (571)
Q Consensus 303 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 380 (571)
..+-.++...|+-+.+..+...... ..+.+......++....+.|++.+|...|++. +-++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4555666667777777666666543 33445556666777788888888888888777 4456678888888888888
Q ss_pred CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 381 g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
|++++|...|.+++++.|+++. ....|+..|.-.|+.+.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~-~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPS-IANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCch-hhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888877 88888888888888888888877665433
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=7e-06 Score=68.39 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=95.9
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
.+..-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|+..|.++..++|+++. ++..++.+|
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~-~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ-APWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-HHHHHHHHH
Confidence 444556677778899999999999887 2334 4678999999999999999999999999999999999 999999999
Q ss_pred hhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHH
Q 008280 413 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~ 476 (571)
...|+.+.|.+.|+......- .+|+..++..+.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhh
Confidence 999999999999998775221 24566666666666655554
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=4e-05 Score=82.92 Aligned_cols=214 Identities=16% Similarity=0.198 Sum_probs=170.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHhhCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-HHHHHHHH
Q 008280 101 SVSWSAMISGYIECGQLDKAVELFKVAPVK--------SVVAWTAMISGYMKFGKVDLAEKLFDEMPT-KN-LVTWNAMI 170 (571)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~li 170 (571)
...|...|.-..+.++.++|++++++++.. -...|.+++++-..-|.-+...++|++.-+ -| ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 467888899999999999999999887622 236788888888888888888999999876 23 35788899
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCH
Q 008280 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDL 249 (571)
Q Consensus 171 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~ 249 (571)
..|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|+.++.++++.-. ...+....-.+.+-.++|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999874 224556788888888888888999999998887631 22456677778888999999
Q ss_pred HHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCcH
Q 008280 250 EDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI--TFVALLLACNHAGLV 315 (571)
Q Consensus 250 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~ 315 (571)
+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-.. .|...+..=.+.|+-
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 999999998874 346789999999999999999999999999988877654 444455444444543
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.42 E-value=2.9e-05 Score=82.42 Aligned_cols=140 Identities=10% Similarity=0.075 Sum_probs=110.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 341 (571)
++..+-.|.....+.|.+++|+.+++...+. .|+.. ....+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 5778888888888999999999999988874 56655 566777888999999999999988876 334457777888
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHH
Q 008280 342 VDLLGRAGKLVEAVDLIKKMP-FKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407 (571)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 407 (571)
..++.+.|++++|.++|+++- ..|+ ..+|..+..++...|+.++|...|+++++...+-.. .|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~-~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR-KLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH-HHHH
Confidence 888999999999999998882 2344 678888888899999999999999999886554433 4443
No 121
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.00017 Score=69.47 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccC-chHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008280 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243 (571)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 243 (571)
+..+-..+...+..++|+.++.++++. .|+.. .|..--..+...| +++++...++.+++.. +.+..+|+...-++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 334444455566677777777776654 34332 3333333444445 4567777777766654 44455566555555
Q ss_pred HhcCCH--HHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---Cc-
Q 008280 244 CKCGDL--EDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA---GL- 314 (571)
Q Consensus 244 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~- 314 (571)
.+.|+. +++..+++.+.+ +|..+|+....++...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555542 566777766653 46778888888888888888888888888876644 455555555444443 22
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc----CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 008280 315 ---VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA----GKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRV 379 (571)
Q Consensus 315 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 379 (571)
.++...+...++. ..+-+...|+.+..+|... ++..+|.+++.+. ...| +......|+..|..
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2456666656654 2345577787777777763 3446677777665 2233 35566667777654
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=3.5e-05 Score=68.98 Aligned_cols=152 Identities=12% Similarity=0.108 Sum_probs=111.4
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 319 (571)
+.+|...|+++......+.+..+. . .+...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655544332221 0 1122566677887787776654 446778888888999999999999
Q ss_pred HHHHHhHHhcCCCCChHhHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 008280 320 QYFDSMVNDYGIAAKPDHYTCMVDLL-GRAGK--LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLF 394 (571)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (571)
..|++..+- .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988752 344577888888864 67777 58999999887 3334 46788888888999999999999999999
Q ss_pred ccCCCCCc
Q 008280 395 NLNPANAA 402 (571)
Q Consensus 395 ~~~p~~~~ 402 (571)
++.|.+..
T Consensus 172 ~l~~~~~~ 179 (198)
T PRK10370 172 DLNSPRVN 179 (198)
T ss_pred hhCCCCcc
Confidence 98887765
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=4.5e-05 Score=70.98 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=31.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+...+.+.|++++|...+....+.+.-.| ....+..++.++...|++++|...++.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445566666666666666655432222 2455556666666666666666665554
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00016 Score=70.41 Aligned_cols=177 Identities=18% Similarity=0.122 Sum_probs=125.4
Q ss_pred CHHHHHHHHHhhCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 008280 248 DLEDACKLFLEIQR------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 321 (571)
Q Consensus 248 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 321 (571)
++.+++..-+.++. ++.......+.+.........+..++.+-.+ ..-...-|.. .-.....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~-A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGR-ALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHH-HHHHHHhcccchHHHH
Confidence 44555555556553 2444555555544333333333333322222 1112223333 3345667899999999
Q ss_pred HHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 322 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
+..+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+|+..+......+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 999887 45566777788889999999999999999888 44566 577888889999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 400 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
++. .|..|+.+|...|+..++...+.++..
T Consensus 407 dp~-~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPN-GWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred Cch-HHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999 999999999999999998888876653
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=7.9e-07 Score=53.74 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 330 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=2.6e-05 Score=79.10 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=112.9
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 308 (571)
++|--..-..+...+..+|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+||+.-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444444445555555555555555555543 2344555555555555555555555444 24455555444444
Q ss_pred HHhc----------------------------CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHh
Q 008280 309 CNHA----------------------------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 360 (571)
Q Consensus 309 ~~~~----------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 360 (571)
.... ++++++.+.|+.-.+- .+....+|-.+.-+..+.++++.|.+.|..
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 3333 4455555555444331 123355666666666677777777777765
Q ss_pred C-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 361 M-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 361 ~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
. ...|| ...||.+-.+|.+.|+..+|...+.++++-+-++.. .+....-.-.+.|.|++|.+.+.++.+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5 34455 467777777777777777777777777776655555 666666666677777777777777654
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00012 Score=78.72 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 008280 100 NSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176 (571)
Q Consensus 100 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 176 (571)
+...|..|+..+...+++++|.++.+.... .....|..+...|.+.++.+++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 445566666666666677776666654432 2223343444455555554444333 233333333
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 008280 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 256 (571)
.++.-...+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|++++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 3443333333344332 2233455666666666777777777777776666 55666666677766666 677776666
Q ss_pred HhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008280 257 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293 (571)
Q Consensus 257 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 293 (571)
.+.. ..|...+++.++.++|.++...
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 5532 2355556666666666666654
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00014 Score=77.38 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=116.5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHH
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITFVA 304 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 304 (571)
.+.++..+..|.......|.+++|+.+++...+ | +...+..++.++.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688889999999999999999999999874 3 5667888999999999999999999999875 4555 45666
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLL 374 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 374 (571)
+..++.+.|++++|..+|+++.. ..+-+...+..+...+...|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77888999999999999999986 33444788999999999999999999999988 2234455555444
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00015 Score=65.10 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH
Q 008280 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347 (571)
Q Consensus 268 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 347 (571)
..+-..+...|+.+....+....... ..-|.......+....+.|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44556666677777777766664432 122333444566777778888888888877765 566777888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 348 AGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 348 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
.|++++|..-|.+. ...| ++...+.|...+.-.|+++.|+.++.......+.++. +-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~-v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR-VRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH-HHHHHHHHHhhcCChHHHHhhc
Confidence 88888887777665 2223 3566777777788888888888888888777777766 7778888888888888887664
Q ss_pred H
Q 008280 426 L 426 (571)
Q Consensus 426 ~ 426 (571)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=3.3e-05 Score=78.38 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 346 (571)
-..+...+...|-...|+.+|++... +..++..|...|+..+|..+..+..++ +|++..|..+.+...
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhcc
Confidence 34567788899999999999998653 455777888899999999988777653 788888888887655
Q ss_pred HcCCHHHHHHHHHhC-----------------------------CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 347 RAGKLVEAVDLIKKM-----------------------------PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 347 ~~g~~~~A~~~~~~~-----------------------------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
..--+++|.++++.. .+.| ...+|-.+..+..+.++.+.|.+.|...+.+
T Consensus 469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 544455555544332 2222 2457888878888999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 397 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 397 ~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
+|++.. .|+.+.-+|.+.|+-.+|...+++..+.+..
T Consensus 549 ~Pd~~e-aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 549 EPDNAE-AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred CCCchh-hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999998 9999999999999999999999999887643
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=1.4e-05 Score=67.19 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=73.2
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++.+|+++. .+..++.+|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR-PYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHH
Confidence 445566677777778888888777776 2223 4567777777888888888888888888888888877 888888888
Q ss_pred hhccChhHHHHHHHHHHhCC
Q 008280 413 AAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~~~ 432 (571)
...|++++|.+.++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888887776643
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00047 Score=67.29 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=117.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA-LLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTC 340 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 340 (571)
....+.-..-.+...|++++|+..++.+... .|+...|.. ....+...++.++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 3344444555667789999999999998875 566655554 45788999999999999999986 3555 667778
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccCh
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 418 (571)
+.++|.+.|++.+|+.++++. ..+.|+..|..|..+|...|+..++. ...+..|.-.|+|
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~------------------~A~AE~~~~~G~~ 441 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL------------------LARAEGYALAGRL 441 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH------------------HHHHHHHHhCCCH
Confidence 899999999999999999887 33456789999999999999977654 4556678889999
Q ss_pred hHHHHHHHHHHhCC
Q 008280 419 DDVARIRLSMKENN 432 (571)
Q Consensus 419 ~~a~~~~~~m~~~~ 432 (571)
++|........++.
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988887654
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=8.1e-05 Score=73.13 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 314 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 314 (571)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++.+..... +-+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667778899999999999988887777788888888888889999999888653 2345555555667888999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 008280 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 365 (571)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 365 (571)
++.|..+.+++.+ -.+.+..+|..|+.+|.+.|+++.|+-.++.+|.-+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998875 234446689999999999999999999999987544
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0013 Score=70.81 Aligned_cols=234 Identities=9% Similarity=0.056 Sum_probs=136.6
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CCc-chHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 008280 68 KDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNS-VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144 (571)
Q Consensus 68 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 144 (571)
.+...|..|+..|...+++++|.++.+...+ |+. ..|-.+...+.+.++..++..+ .+++....
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 3556777788888788888888888775543 332 3344444466666665555443 22222223
Q ss_pred cCCHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHH
Q 008280 145 FGKVDLAEKLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (571)
..++.-...+.+.|.. .+..++..+..+|-+.|+.++|...++++.+.. +-|....+.+...++.. ++++|.+++.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 3333222233333322 233466677788888888888888888887765 44666777777777777 8888887777
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHH
Q 008280 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSIT 301 (571)
Q Consensus 223 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t 301 (571)
.++.. |....++..+.+++.++...++.-. +.-+.+.+.+... |..--..+
T Consensus 174 KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~-------------d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDF-------------DFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHHHH---------------HHhhhcchHHHHHHHHHHhcCcccc-------------hHHHHHHHHHHhhhccchhHHH
Confidence 66543 5556677777777777765443322 2222233333222 22223345
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 346 (571)
+.-+-..|...++++++..+++.+.+. -+.+.....-+++.|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 555566677777788888888877752 2233444444555443
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0017 Score=58.44 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=30.9
Q ss_pred HHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhH
Q 008280 351 LVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 351 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
+.+|.-+|+++ +..|+..+.+....++...|++++|+.+++.++..+|+++. +...++-.--..|+-.+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe-tL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE-TLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHhCCChH
Confidence 33444444444 12344444444444444444445554444444444444444 44444444444444433
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0012 Score=59.30 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=70.7
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHH
Q 008280 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH----AGLVD 316 (571)
Q Consensus 241 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~ 316 (571)
..|...|++++|.+.......-+.... =...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 344555555555555554221122222 223334444555555555555542 134444444444332 23445
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCC-HhHHHHHHHHH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKR-LDLAEFAAMNL 393 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 393 (571)
.|.-+|++|.+ ..+|++.+.+....+....|++++|..++++. ....++.+...++..-...|. .+.-.+...++
T Consensus 191 dAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 55555555543 24555555555555555555555555555554 112233344333333333333 33344555566
Q ss_pred hccCCCCC
Q 008280 394 FNLNPANA 401 (571)
Q Consensus 394 ~~~~p~~~ 401 (571)
....|+.+
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 66666554
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=5e-05 Score=74.57 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHh
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRV 379 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 379 (571)
...++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ..+.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667777888888888887754 244 4445777777778888888887766 222355666666777889
Q ss_pred cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 380 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
.++++.|+.+++++.+..|++.. +|..|+.+|.+.|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~-~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFE-TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHH-HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999988 99999999999999999999888764
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=9.5e-05 Score=62.00 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=87.1
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 008280 286 LFDKMKDEGMKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF 363 (571)
Q Consensus 286 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 363 (571)
+|++.... .|+. .....+...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 3433 44556677788889999999999888763 3456788888899999999999999988877 23
Q ss_pred CC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 364 KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 364 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.| +...+..+...+...|++++|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 4677788888899999999999999999999998864
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.5e-06 Score=51.16 Aligned_cols=35 Identities=34% Similarity=0.677 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA 198 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 198 (571)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.7e-06 Score=50.70 Aligned_cols=34 Identities=44% Similarity=0.859 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 298 (571)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999987
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0014 Score=58.56 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=101.5
Q ss_pred CchHHHHHHHHHHHh---CC-CCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHH---HHHHHHcCChHHH
Q 008280 212 SSLQLGKQVHQLVFK---SP-LCKDTT-ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM---ISGYAQHGKGEKA 283 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~---~g-~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A 283 (571)
.+.++..++...++. .| ..++.. ++.-++-+...+|+.+.|..+++.+..+-+.++... ..-+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 455666666655543 23 334433 234445555566777777777766554222221111 1123345667777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 008280 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P 362 (571)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 362 (571)
+++++...+.+ +.|.+++.-=+...-..|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 77777766654 33445555444444455555566666666665 35666667777777777777777776666666 1
Q ss_pred CCC-CHhHHHHHHHHHHh---cCCHhHHHHHHHHHhccCCCC
Q 008280 363 FKP-QPAIFGTLLSACRV---HKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 363 ~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~ 400 (571)
+.| ++..+..+...+.- ..+.+.+...|.+++++.|.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 222 33444555544322 235556666667777666644
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00084 Score=59.85 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=90.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH
Q 008280 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL-LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347 (571)
Q Consensus 269 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 347 (571)
.++-+....|+.+-|...++++...- |.+.-...+ ..-+...|++++|.++++.+.++ -+.|..++-.-+.+.-.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHH
Confidence 33444455666666766666665542 333211111 11234456666777777766653 24445555555555555
Q ss_pred cCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc---ChhHHH
Q 008280 348 AGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK---KWDDVA 422 (571)
Q Consensus 348 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g---~~~~a~ 422 (571)
.|+--+|++-+.+. .+..|...|.-|...|...|+++.|...+++++=..|-++. .|..+++.+.-.| +.+-|.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l-~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL-YFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHhhHHHHHHHH
Confidence 66655666555444 23356667777777777777777777777777767776666 6666666655444 333466
Q ss_pred HHHHHHHhCC
Q 008280 423 RIRLSMKENN 432 (571)
Q Consensus 423 ~~~~~m~~~~ 432 (571)
+++.+..+.+
T Consensus 212 kyy~~alkl~ 221 (289)
T KOG3060|consen 212 KYYERALKLN 221 (289)
T ss_pred HHHHHHHHhC
Confidence 6666555443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.3e-05 Score=48.76 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 196 (571)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999988887
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.6e-05 Score=48.29 Aligned_cols=33 Identities=45% Similarity=0.836 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 297 (571)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00035 Score=59.31 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=38.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCCH----hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhc
Q 008280 341 MVDLLGRAGKLVEAVDLIKKMP-FKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 415 (571)
+...+...|++++|...|+... ..||. .....|...+...|++++|+..++... ..+-.+. .+..++++|.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~-~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKAL-AAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHH-HHHHHHHHHHHC
Confidence 3344444555555555554441 11221 223334444555555555555554421 1111222 445555666666
Q ss_pred cChhHHHHHHHH
Q 008280 416 KKWDDVARIRLS 427 (571)
Q Consensus 416 g~~~~a~~~~~~ 427 (571)
|++++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 666666655543
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.041 Score=58.02 Aligned_cols=399 Identities=16% Similarity=0.113 Sum_probs=203.5
Q ss_pred CHHHHHHHHhhCCC--CChhhHHHHHHHH--HcCCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCCHHHHHHHHh
Q 008280 22 KLKDAQELFDKIPQ--PDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFL 94 (571)
Q Consensus 22 ~~~~A~~~~~~~~~--~~~~~~~~ll~~~--~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~ 94 (571)
++..|.+..++..+ ||.. |...+.++ .+. |..++|..+++... ..|..|...+-.+|...|+.++|..+|+
T Consensus 24 qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666666666654 4443 33333333 355 77788887776653 2467777778888888888888888888
Q ss_pred hCCC--CCcchHHHHHHHHHHcCChH----HHHHHHhhCCCCChhHHHHHHHHHHhcC----------CHHHHHHHHhhC
Q 008280 95 AMPE--KNSVSWSAMISGYIECGQLD----KAVELFKVAPVKSVVAWTAMISGYMKFG----------KVDLAEKLFDEM 158 (571)
Q Consensus 95 ~m~~--~d~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~ 158 (571)
+..+ |+......+..+|++.+++. .|+++++.. +.+++.+=+.++.+.+.- -+.-|.+.++.+
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 8765 44445555666777766554 345555533 333433333444433321 123455566655
Q ss_pred CCCC-H----HHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCC
Q 008280 159 PTKN-L----VTWNAMIAGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 232 (571)
Q Consensus 159 ~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 232 (571)
.+.+ . .-...-...+-..|.+++|++++..=. +.-...+...-+.-+..+...+++.+..++-.+++..|.. |
T Consensus 181 l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d 259 (932)
T KOG2053|consen 181 LEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D 259 (932)
T ss_pred hccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c
Confidence 5433 1 111112233445677888887773322 2212223333345555566677777777777777776622 2
Q ss_pred cchHHHHHHHHHh----------------cCCHHHHHHHHHhhCC-CChhhHHHHHHHHH---HcCChHHHHHHHHHHHH
Q 008280 233 TTALTPLISMYCK----------------CGDLEDACKLFLEIQR-KDVVTWNAMISGYA---QHGKGEKALRLFDKMKD 292 (571)
Q Consensus 233 ~~~~~~li~~y~~----------------~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~ 292 (571)
|...++.+.+ .+.++...+..++... +....|-+-+.++. .-|+.++++..|-+-
T Consensus 260 ---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k-- 334 (932)
T KOG2053|consen 260 ---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK-- 334 (932)
T ss_pred ---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--
Confidence 3333332221 1222222222222221 11222333333333 346666655443321
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChH-------hHHHHHHHHHHcCCH-----HHHHHHHHh
Q 008280 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD-------HYTCMVDLLGRAGKL-----VEAVDLIKK 360 (571)
Q Consensus 293 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~ 360 (571)
-|-.| .+..=+..|...=..++-..++..... ..++.. -+.+.+....-.|.+ +.-..++.+
T Consensus 335 fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~k 408 (932)
T KOG2053|consen 335 FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRK 408 (932)
T ss_pred hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 12222 111111122221122222223222221 111111 122223222233321 111112211
Q ss_pred C------C------CCCC---------HhHHHHHHHHHHhcCCHh---HHHHHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 361 M------P------FKPQ---------PAIFGTLLSACRVHKRLD---LAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 361 ~------~------~~p~---------~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
. | .-|. ..+.+.|+..+++.++.. +|+-+++..+...|.+.. +-..|+.+|+-.|
T Consensus 409 l~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~-~KLlLiriY~~lG 487 (932)
T KOG2053|consen 409 LKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQ-TKLLLIRIYSYLG 487 (932)
T ss_pred HHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHH-HHHHHHHHHHHhc
Confidence 1 1 1112 125567888898888755 677777888888999987 8889999999999
Q ss_pred ChhHHHHHHHHHHhCCCccC
Q 008280 417 KWDDVARIRLSMKENNVVKM 436 (571)
Q Consensus 417 ~~~~a~~~~~~m~~~~~~~~ 436 (571)
-+..|.+.++.+--++|..+
T Consensus 488 a~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 488 AFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred CChhHHHHHHhcchHHhhhc
Confidence 99999999998876666543
No 147
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.02 Score=58.38 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=92.3
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC-CC------------hhhHHHHHHHHHcCCCHHHH
Q 008280 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-KD------------TASWNTMISGFVQKKNMAKA 89 (571)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~-~d------------~~~~~~li~~~~~~g~~~~A 89 (571)
+++|.+..+.- |.+..|..|....... -.++-|...|-+... +. .....+=|.+| -|++++|
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEA 753 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHh
Confidence 66666655533 4455666665554444 556666665554432 11 11112222232 2666777
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCC-----hhHHHHHHH-------------HHHhcC-----
Q 008280 90 RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-----VVAWTAMIS-------------GYMKFG----- 146 (571)
Q Consensus 90 ~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~-------------~~~~~g----- 146 (571)
.+++-+|.++|. .|..+.+.|+|-...++++..-..+ ...++.+.+ .|.++|
T Consensus 754 ek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~ 828 (1189)
T KOG2041|consen 754 EKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQ 828 (1189)
T ss_pred hhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhH
Confidence 777666655542 3444555556655555555432111 022333332 233333
Q ss_pred --------CHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHH
Q 008280 147 --------KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218 (571)
Q Consensus 147 --------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 218 (571)
++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .| ...+..|..++++.+|.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHH
Confidence 33333333333333 44456678888888999898888775432 22 23455677777777776
Q ss_pred HHHH
Q 008280 219 QVHQ 222 (571)
Q Consensus 219 ~~~~ 222 (571)
++-+
T Consensus 899 elaq 902 (1189)
T KOG2041|consen 899 ELAQ 902 (1189)
T ss_pred HHHH
Confidence 6544
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00012 Score=56.42 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhc
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 415 (571)
+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...+++.....|.++. .+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK-AYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHHH
Confidence 445666677778888888887765 2223 3356777777778888888888888888888888776 788888888888
Q ss_pred cChhHHHHHHHHHHh
Q 008280 416 KKWDDVARIRLSMKE 430 (571)
Q Consensus 416 g~~~~a~~~~~~m~~ 430 (571)
|++++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888888877654
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00093 Score=56.69 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC--hHhHHHHH
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHYTCMV 342 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li 342 (571)
|..++..+ ..++...+...++.+........ ......+...+...|++++|...|+.+... ...|. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33344444 46777777777777776532111 123333456677778888888888887764 21222 22344567
Q ss_pred HHHHHcCCHHHHHHHHHhCCC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 343 DLLGRAGKLVEAVDLIKKMPF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
..+...|++++|+..++..+. ......+..+...+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777788888888888877532 123455666677788888888888888765
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=1.4e-05 Score=60.66 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHH
Q 008280 349 GKLVEAVDLIKKM----PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424 (571)
Q Consensus 349 g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~ 424 (571)
|++++|+.+++++ |..|+...|..+..++.+.|++++|..++++ .+.+|.++. ....++.+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~-~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD-IHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH-HHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH-HHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555554 2111334444456666666666666666666 555555444 555556667777777777666
Q ss_pred HHH
Q 008280 425 RLS 427 (571)
Q Consensus 425 ~~~ 427 (571)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.83 E-value=3.6e-05 Score=55.86 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=58.5
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc-ChhHHHHHHHHHHh
Q 008280 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK-KWDDVARIRLSMKE 430 (571)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 430 (571)
++.+|..+...+...|++++|+..|+++++.+|+++. +|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE-AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH-HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999988 9999999999999 79999999987765
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00028 Score=57.49 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC---CchhHHHHHH
Q 008280 339 TCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLAN 410 (571)
Q Consensus 339 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~~l~~ 410 (571)
..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++++....|++ +. ++..++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD-ALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH-HHHHHHH
Confidence 33444444555555555555444 11111 1233444555555555555555555555554443 22 4455555
Q ss_pred HHhhccChhHHHHHHHHHHhC
Q 008280 411 IYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 411 ~~~~~g~~~~a~~~~~~m~~~ 431 (571)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00045 Score=56.22 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLL 374 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 374 (571)
++..+...+...|++++|...|..+...+.-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666777777777776665321111 1344555677777777777777777765 11222 35667777
Q ss_pred HHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 375 SACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.++...|+.++|...++++++..|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 7788888888888888888888887754
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00085 Score=63.95 Aligned_cols=269 Identities=12% Similarity=0.030 Sum_probs=163.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccC
Q 008280 137 AMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLS 212 (571)
Q Consensus 137 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~ 212 (571)
...+.+.+..++.+|++.+....+ .+..-|..-...+...|++++|+--.++-.+. +|. .....-.-..+...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhH
Confidence 344566667777777777766553 34455666777777778888777666555442 222 223444444455555
Q ss_pred chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC-----CChhhHHHH-HHHHHHcCChHHHHHH
Q 008280 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-----KDVVTWNAM-ISGYAQHGKGEKALRL 286 (571)
Q Consensus 213 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~ 286 (571)
+..+|.+.++. ...+ ....|+..++.+.. |.-.+|..+ ..++...|+.++|...
T Consensus 132 ~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 55555555441 0000 11122222222221 122333333 2345567777777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHh-------------HHHHHHHHHHcCCHHH
Q 008280 287 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH-------------YTCMVDLLGRAGKLVE 353 (571)
Q Consensus 287 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~ 353 (571)
--...+... .+......-..++-..++.+.+...|++.++ +.|+-.. +.-=.+...+.|++.+
T Consensus 192 a~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 655554321 1111111111233445677777777776652 3444221 1112344567899999
Q ss_pred HHHHHHhC-C-----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 354 AVDLIKKM-P-----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 354 A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
|.+.|.+. . .+|++..|.....+..+.|+.++|+.--+.+++++|.... .|..-++++...++|++|.+-++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik-all~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK-ALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877 3 3455667777777888999999999999999999999887 999999999999999999999988
Q ss_pred HHhCC
Q 008280 428 MKENN 432 (571)
Q Consensus 428 m~~~~ 432 (571)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 76543
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00038 Score=68.66 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 008280 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRL 383 (571)
Q Consensus 306 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 383 (571)
...+...|++++|...|.++++. .+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33445556666666666666542 2333555555666666666666666666555 2223 344555556666666666
Q ss_pred hHHHHHHHHHhccCCCCCc
Q 008280 384 DLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 384 ~~a~~~~~~~~~~~p~~~~ 402 (571)
++|+..|+++++++|+++.
T Consensus 87 ~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 6666666666666666654
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=6.6e-05 Score=53.68 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
+...+...|++++|+..|+++++.+|+++. .+..++.++...|++++|...+++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPE-AWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455677888888999999988888888887 88888888888899999888888876543
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.07 Score=54.64 Aligned_cols=187 Identities=15% Similarity=0.133 Sum_probs=114.0
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC-CCcc------------hHHHHHHHHHHcCChHH
Q 008280 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSV------------SWSAMISGYIECGQLDK 119 (571)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~d~~------------~~~~li~~~~~~g~~~~ 119 (571)
=.+++|.+..+.- |.+..|..|...-.+.-.++.|...|-+... +.+. .-.+=+.+ --|++++
T Consensus 677 vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~fee 752 (1189)
T KOG2041|consen 677 VGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEE 752 (1189)
T ss_pred hchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhH
Confidence 3567788877764 4556788887777777777777777766543 1111 01111222 3589999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 008280 120 AVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTK--N---LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194 (571)
Q Consensus 120 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 194 (571)
|.++|-.+..+|. .+.++.+.|++-...++++.-... | ..+|+.+...++....|++|.+.|..-..
T Consensus 753 aek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred hhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 9999988866654 466778888888888887654321 1 24788888888888888888887765321
Q ss_pred CCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 008280 195 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262 (571)
Q Consensus 195 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 262 (571)
. ...+.++.+..++++-+.+-. .++.+....-.+.+|+.+.|.-++|.+.|-+...|
T Consensus 825 ---~---e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 825 ---T---ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred ---h---HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 1 112333333333333322222 13445555666667777777777776666655443
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.7e-05 Score=45.02 Aligned_cols=31 Identities=48% Similarity=0.939 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGM 295 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 295 (571)
++||.|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877653
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.3e-05 Score=45.19 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGI 194 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 194 (571)
++||+|+++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00071 Score=51.95 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 346 (571)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3444555555555555555555554432 112233444444455555555555555544431 1222233334444444
Q ss_pred HcCCHHHHHHHH
Q 008280 347 RAGKLVEAVDLI 358 (571)
Q Consensus 347 ~~g~~~~A~~~~ 358 (571)
..|+.++|...+
T Consensus 80 ~~~~~~~a~~~~ 91 (100)
T cd00189 80 KLGKYEEALEAY 91 (100)
T ss_pred HHHhHHHHHHHH
Confidence 444444444433
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.00062 Score=59.73 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=62.2
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~ 409 (571)
...+..+...|.+.|++++|...|++. ...|+ ...+..+...+...|++++|+..++++++..|+++. .+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS-ALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-HHHHHH
Confidence 345566667777777777777777765 11122 357778888888999999999999999999998877 888888
Q ss_pred HHHhhccC
Q 008280 410 NIYAAMKK 417 (571)
Q Consensus 410 ~~~~~~g~ 417 (571)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 88888776
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=97.62 E-value=0.0015 Score=54.88 Aligned_cols=89 Identities=16% Similarity=0.038 Sum_probs=76.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccCh
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 418 (571)
..--+...|++++|..+|+-+ --.-+..-|..|..+|...+++++|+..|..+..+++++|. ++...+.+|...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~-p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR-PVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-ccchHHHHHHHhCCH
Confidence 344456789999999999877 11245667899999999999999999999999999999998 999999999999999
Q ss_pred hHHHHHHHHHHh
Q 008280 419 DDVARIRLSMKE 430 (571)
Q Consensus 419 ~~a~~~~~~m~~ 430 (571)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998776
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00066 Score=62.22 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHH
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLA 386 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 386 (571)
..+.+++.+|+..|...++ -.+-++..|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567788888888888875 23445666777788888889888888877766 55555 46899999999999999999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHH
Q 008280 387 EFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 387 ~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
++.|+++++++|++.. ....|-.+
T Consensus 169 ~~aykKaLeldP~Ne~-~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES-YKSNLKIA 192 (304)
T ss_pred HHHHHhhhccCCCcHH-HHHHHHHH
Confidence 9999999999999975 44444433
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0039 Score=64.39 Aligned_cols=61 Identities=20% Similarity=0.112 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
..+.++.-.....|++++|...++++++++|+ .. +|..++.+|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~-a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WL-NYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444455555555555555555553 33 555555555555555555555555443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0012 Score=65.27 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=81.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc
Q 008280 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348 (571)
Q Consensus 269 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 348 (571)
.....+...|++++|+.+|++.++.. +-+...|..+..++...|++++|...++.+++. -+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 34556778899999999999998864 235667888889999999999999999999863 344577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 008280 349 GKLVEAVDLIKKM-PFKPQPAIFGTLL 374 (571)
Q Consensus 349 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 374 (571)
|++++|+..|++. ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999887 4445544444433
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.00063 Score=59.43 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=74.2
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHH
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l 408 (571)
....|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..+++++...|.... .+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~-~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ-ALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHH
Confidence 3556667777788888899988888776 22222 357888889999999999999999999999999887 88888
Q ss_pred HHHHh-------hccChhHHHHHHHHH
Q 008280 409 ANIYA-------AMKKWDDVARIRLSM 428 (571)
Q Consensus 409 ~~~~~-------~~g~~~~a~~~~~~m 428 (571)
+.+|. ..|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888 778888776666544
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.085 Score=50.46 Aligned_cols=271 Identities=17% Similarity=0.172 Sum_probs=174.2
Q ss_pred cCCHHHHHHHHhhCC---CCCHHHHHHHH--HHHHHcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCchHHH
Q 008280 145 FGKVDLAEKLFDEMP---TKNLVTWNAMI--AGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCSHLSSLQLG 217 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~---~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a 217 (571)
.|+-..|++.-.+.. ..|....-.++ ++-.-.|+++.|.+-|+.|... |... -+..+.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 455666665554432 23333322333 2334468888888888888752 2211 122333334567888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC-----CCChh--hHHHHHHHHHH---cCChHHHHHHH
Q 008280 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-----RKDVV--TWNAMISGYAQ---HGKGEKALRLF 287 (571)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 287 (571)
+++-+..-..- +.-...+.+.+...+..|+++.|+++++.-. ++++. .-..|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766553 3445677888899999999999999988654 34432 22223332221 23455666655
Q ss_pred HHHHHcCCCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH--H--HHHHhCC
Q 008280 288 DKMKDEGMKPDSIT-FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA--V--DLIKKMP 362 (571)
Q Consensus 288 ~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~ 362 (571)
.+..+ +.||-+. -.....++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+.... . +-++.|
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl- 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL- 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc-
Confidence 55443 5677653 334457889999999999999998753 67776654333 3455553221 1 123334
Q ss_pred CCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh-ccChhHHHHHHHHHHh
Q 008280 363 FKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA-MKKWDDVARIRLSMKE 430 (571)
Q Consensus 363 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~ 430 (571)
+|| ..+..++..+-...|++..|..-.+.+....|... .|..|+++-.. .|+-.++...+.+-.+
T Consensus 325 -k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 325 -KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 454 57778888888899999999999999999999876 89999998765 4999998888766553
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0019 Score=59.66 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhc---CCHhHHHHHHHHHhccCCCCCchhH
Q 008280 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVH---KRLDLAEFAAMNLFNLNPANAAGCY 405 (571)
Q Consensus 331 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 405 (571)
-+-|.+.|-.|...|.+.|++..|..-|.+. ... +++..+..+..++..+ ....++..+++++++++|+++. +.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir-al 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR-AL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH-HH
Confidence 3667999999999999999999999999887 222 4567777777775433 3467899999999999999998 99
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHhCCCccC
Q 008280 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKM 436 (571)
Q Consensus 406 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 436 (571)
..|+..+...|++.+|...++.|.+......
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998666433
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.057 Score=51.59 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhc-CCCCC--hH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMK-----PDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAK--PD 336 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~ 336 (571)
.+..++..+.+.|++++|.++|++....-.. ++.. .|...+-.+...|++..|.+.++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3455677788888888888888887654322 1111 23334445666788888888888776421 22222 33
Q ss_pred hHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 008280 337 HYTCMVDLLGR--AGKLVEAVDLIKKMP 362 (571)
Q Consensus 337 ~~~~li~~~~~--~g~~~~A~~~~~~~~ 362 (571)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44556666643 345777777777774
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.006 Score=53.25 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHH
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 341 (571)
...|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|...++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566667777777888888888887765432221 236667777777788888888887777642 22224445555
Q ss_pred HHHHH
Q 008280 342 VDLLG 346 (571)
Q Consensus 342 i~~~~ 346 (571)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00043 Score=52.37 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=44.6
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHH
Q 008280 277 HGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 277 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 354 (571)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46677777777777664321 2333444466667777777777777765 2 11222 23333446666677777777
Q ss_pred HHHHHh
Q 008280 355 VDLIKK 360 (571)
Q Consensus 355 ~~~~~~ 360 (571)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.12 Score=49.92 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 315 (571)
.+.-+.-+...|+...|.++-.+..=||-..|-..+.+++..++|++-..+-.. . -.++.|.-++.+|...|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCH
Confidence 344455566788888898888888878888899999999999998877665332 1 2346788888888889998
Q ss_pred HHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 008280 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 376 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 376 (571)
.+|..+...+. +..-+.+|.++|++.+|.+.--+. .|...+..+...
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~ 300 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKR 300 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHH
Confidence 88888776531 145678888999998888775554 244444444433
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.0085 Score=57.23 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHH
Q 008280 166 WNAMIAGYVENSWAEDGLKLLRMMIGL----GIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240 (571)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 240 (571)
|......|-..|++++|.+.|.+.... +-+.+. ..|......+ +..+++.|...+.. .+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HH
Confidence 344566677777777777777665431 100000 1111111122 22244444443332 33
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcC
Q 008280 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKD----EGMKPD--SITFVALLLACNHAG 313 (571)
Q Consensus 241 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~t~~~ll~a~~~~g 313 (571)
..|...|++..|-+++.. +...|... |++++|++.|++..+ .| .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 455666666666555444 34455555 666677666666432 12 111 123445556666677
Q ss_pred cHHHHHHHHHHhHHhcCC----CCCh-HhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 314 LVDLGIQYFDSMVNDYGI----AAKP-DHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~----~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
++++|.++|+++....-- ..+. ..+...+-.+...|++..|.+.+++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777666543111 1111 12223333445566666666666654
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00032 Score=50.05 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 33354 57888888888899999999999999999888764
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.066 Score=51.62 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 244 (571)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-..+-.. ..++.-|..++..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455666667777777776655442 46777777777788777877766654321 123456777777777
Q ss_pred hcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008280 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
+.|+..+|..+..++. +..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHH
Confidence 7888888877777633 3555666777777777766543
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.43 E-value=0.0033 Score=59.84 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA-CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367777887778888888889998887543 2234445444443 33457777799999999885 4667788889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 344 LLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--...|+.+....+.+++.+.-|++. .+..+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~--~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN--SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS---HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh--HHHHHHHHh
Confidence 999999999999999887 22233 35899999999999999999999999999888865 455555544
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00096 Score=61.20 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhH
Q 008280 343 DLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
.-+.+.+++++|+..|.+. .+.| |++.|..-..+|.+.|.++.|++-.+.++.++|.... +|..|+.+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk-ay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK-AYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH-HHHHHHHHHHccCcHHH
Confidence 4456789999999999887 4444 5677788889999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHh
Q 008280 421 VARIRLSMKE 430 (571)
Q Consensus 421 a~~~~~~m~~ 430 (571)
|++.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987665
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00015 Score=52.26 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=42.4
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
...|++++|+..++++++.+|+++. ....++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPE-ARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888888888888888888887 888888888888888888888877665
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.0012 Score=62.75 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=152.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCchHHHHHHHHHHHh----CCC-CCCcchHHHHHHH
Q 008280 172 GYVENSWAEDGLKLLRMMIGLGIRPNA----SSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPL-CKDTTALTPLISM 242 (571)
Q Consensus 172 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~ 242 (571)
-+++.|+....+.+|+..++.| ..|. ..|+.+-++|.-.+++++|.++|..=+. .|- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4667777777777777777766 2333 3455556666777777777777653211 110 0111222234445
Q ss_pred HHhcCCHHHHHHHHHhhCC-------C--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH---
Q 008280 243 YCKCGDLEDACKLFLEIQR-------K--DVVTWNAMISGYAQHGK--------------------GEKALRLFDKM--- 290 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 290 (571)
+--.|.+++|.-.-.+-.. + ...++..+...|...|+ ++.|.++|.+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666554332211 1 12344445555544332 23344444432
Q ss_pred -HHcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHH---hHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC---
Q 008280 291 -KDEGMK-PDSITFVALLLACNHAGLVDLGIQYFDS---MVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM--- 361 (571)
Q Consensus 291 -~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 361 (571)
.+.|-. .....|..|.+.|.-.|+++.|+..++. +.+.+|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 122200 0112455566666667889999877653 2233443332 446778888899999999999988765
Q ss_pred ----CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc----C--CCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 362 ----PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL----N--PANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 362 ----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+. .....+..+|.++|.....++.|+.++.+-+.+ + ..... ++..|+++|...|..++|..+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R-acwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR-ACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 123457778899999999999999988876542 1 22233 88899999999999999988776554
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.00059 Score=50.00 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
...|.+.++++.|..+++++++++|+++. .+...+.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE-LWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch-hhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677889999999999999999999888 888999999999999999999988876443
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.035 Score=47.33 Aligned_cols=133 Identities=10% Similarity=0.036 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHhHH
Q 008280 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIF 370 (571)
Q Consensus 295 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~ 370 (571)
..|+...-..|..+....|+..+|...|++...- -+.-|......+..+....+++.+|...++++. ...++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666667888889999999999999888762 355667778888888888999999998888771 11122344
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
..+.+++...|.++.|+..|+.++.--|+.. .-...+..+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~--ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQ--ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH--HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5567788899999999999999999888764 566677788899988888776655543
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.32 E-value=0.0057 Score=51.25 Aligned_cols=93 Identities=10% Similarity=-0.024 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 244 (571)
....+..-+.+.|++++|..+|+.+.... +-+..-|-.+...|...|++++|...|..+.... +.|+..+-.+..+|.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33344444445555555555555444321 1122233333334444455555555555554444 344555555566666
Q ss_pred hcCCHHHHHHHHHhh
Q 008280 245 KCGDLEDACKLFLEI 259 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~ 259 (571)
+.|+.+.|++.|+..
T Consensus 115 ~lG~~~~A~~aF~~A 129 (157)
T PRK15363 115 ACDNVCYAIKALKAV 129 (157)
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666666543
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.0069 Score=53.09 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN--ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 241 (571)
..+..+...+...|++++|+..|++.......+. ...+..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455556666666666666666666654322221 2344555555556666666666666655543 233444555556
Q ss_pred HHHhcCCHHHHH
Q 008280 242 MYCKCGDLEDAC 253 (571)
Q Consensus 242 ~y~~~g~~~~A~ 253 (571)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666655544443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.0089 Score=48.23 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=59.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCC---CcchHHHHHHH
Q 008280 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPN--ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK---DTTALTPLISM 242 (571)
Q Consensus 168 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~ 242 (571)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +..+...+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345667777888888888888887775543 2244555566666777777777776666542 11 22222223344
Q ss_pred HHhcCCHHHHHHHHHhhCCCChhhHHHHHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 274 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 274 (571)
+...|+.++|.+.+-....++...|..-|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655544433333444333333
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.18 E-value=0.018 Score=59.62 Aligned_cols=140 Identities=18% Similarity=0.081 Sum_probs=102.4
Q ss_pred CCChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc--------CcHHHHHHHHHHhH
Q 008280 261 RKDVVTWNAMISGYAQHG-----KGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHA--------GLVDLGIQYFDSMV 326 (571)
Q Consensus 261 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 326 (571)
..|..+|...+.+..... ...+|..+|++..+. .|+. ..+..+..++... .+...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 357789999988865432 367899999999885 5664 3555544444322 12334444444433
Q ss_pred HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.....+.++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21123445678888877777889999999999988 56688889999999999999999999999999999999984
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.17 E-value=0.0053 Score=49.51 Aligned_cols=87 Identities=21% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC---CCchhHHHHHHHH
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM---PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA---NAAGCYVQLANIY 412 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~~l~~~~ 412 (571)
+..++-..|+.++|+.+|++. +.... ...+-.+.+++...|++++|+.++++.....|+ +.. ....++.++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~-l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA-LRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH-HHHHHHHHH
Confidence 445566667777777777665 21111 245556777788888888888888888777676 444 556667777
Q ss_pred hhccChhHHHHHHHHH
Q 008280 413 AAMKKWDDVARIRLSM 428 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m 428 (571)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8888888888776543
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0064 Score=57.87 Aligned_cols=130 Identities=8% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHhHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR-AGKLVEAVDLIKKM--PFKPQPAIFGTLLSA 376 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 376 (571)
.+|..++....+.+..+.|+.+|.+..+. -..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999753 33345666666666455 56666699999988 334677889999999
Q ss_pred HHhcCCHhHHHHHHHHHhccCCCCC--chhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 377 CRVHKRLDLAEFAAMNLFNLNPANA--AGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
+...++.+.|..+|++.+..-|... ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988655443 237888888889999999999999888753
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.00065 Score=48.94 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=26.3
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
..|++++|.++|+.+... .+.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666666666665542 2234455555555555555555555555555
No 189
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.12 E-value=0.31 Score=47.65 Aligned_cols=137 Identities=14% Similarity=0.100 Sum_probs=104.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHH
Q 008280 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340 (571)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 340 (571)
+-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-... ++.++.--.-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 445678888888888888889999999999888 6677778888876554 57888899999876653 2333333456
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM--PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
.+.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.++-|...
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 677788899999999999855 22233 46888899888889999999988888888888763
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.17 Score=45.88 Aligned_cols=163 Identities=13% Similarity=-0.018 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH
Q 008280 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPT--KN--------LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201 (571)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 201 (571)
...+++|...|.-..-+++-...|+.-.. .. ...-+.++..+...|.+.-.+.++++.++...+.++...
T Consensus 136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 34456666666555545555555443222 12 234566777777788888889999998886656677777
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCC-----CcchHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHH
Q 008280 202 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-----DTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISG 273 (571)
Q Consensus 202 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 273 (571)
+.+.+...+.|+.+.|...++.+.+..-.. ...+.......|.-.+++..|...|.+++.. |++.-|.-.-+
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 888888888999999999999777643233 3333344445566778899999999888753 55666666666
Q ss_pred HHHcCChHHHHHHHHHHHHcC
Q 008280 274 YAQHGKGEKALRLFDKMKDEG 294 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g 294 (571)
..-.|+..+|++.++.|...-
T Consensus 296 llYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 667789999999999998753
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.10 E-value=0.015 Score=57.81 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=87.5
Q ss_pred CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC----CChhh
Q 008280 193 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVT 266 (571)
Q Consensus 193 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 266 (571)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788888777888888777776665 2223345556888888888888888888776443 67888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 312 (571)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766666777776666666654
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0013 Score=47.51 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=49.0
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-CHhHHHHHHHHHhccCC
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHK-RLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 398 (571)
++..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777778888888888887776 2234 4567888888888888 68888888888888877
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.08 E-value=0.12 Score=52.46 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 008280 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318 (571)
Q Consensus 239 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 318 (571)
...++...|+.++|..+ ...+|-.+-+.++-+++-. .+..+...+..-+.+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 34455556666666444 2334444444444444322 2334555555555566667777
Q ss_pred HHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 008280 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKPQP 367 (571)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 367 (571)
.++|.+|-. ...++++....+++++|..+-++.| ..||+
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 788877632 2356777788888888888888875 33443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.1 Score=48.41 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=29.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIK 359 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 359 (571)
+..-|.+.|.+..|..-++.+++++.-.|. .+....++.+|...|..++|.++..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 344455556666666666666554432222 3344455566666666666655443
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.03 E-value=0.00035 Score=42.07 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=30.6
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhhccChhHHHH
Q 008280 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 423 (571)
Q Consensus 390 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~ 423 (571)
|+++++++|+++. +|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~-a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE-AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH-HHHHHHHHHHHCcCHHhhcC
Confidence 6889999999999 99999999999999999863
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.55 Score=48.98 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 322 (571)
+...|+..+|.++-.+..-+|-..|-.-+.+++..+++++-+++-+.++ .+..|.-...+|.+.|+.++|..++
T Consensus 694 li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhh
Confidence 3334455555555544444444444444445555555444433333221 1223333444455555555554444
Q ss_pred H
Q 008280 323 D 323 (571)
Q Consensus 323 ~ 323 (571)
.
T Consensus 768 p 768 (829)
T KOG2280|consen 768 P 768 (829)
T ss_pred h
Confidence 3
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.02 E-value=0.0048 Score=57.66 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC---CchhHHHH
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQL 408 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~~l 408 (571)
.|..-+..+.+.|++++|...|+.. ...|+ ...+.-+...|...|++++|...|+++++..|++ +. ++..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d-Al~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD-AMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH-HHHHH
Confidence 3444444445567777777777665 11233 2355556677777788888888888777766654 33 45556
Q ss_pred HHHHhhccChhHHHHHHHHHHhC
Q 008280 409 ANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
+.+|...|++++|.++++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777778888888887777653
No 198
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.99 E-value=0.017 Score=44.94 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------cHHHHHHHHHHhHHhcCCCCChHh
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLACNHAG--------LVDLGIQYFDSMVNDYGIAAKPDH 337 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 337 (571)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. .+-+.+.+|+.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666777999999999999999999 899999999998876643 234566778888875 78888888
Q ss_pred HHHHHHHHHH
Q 008280 338 YTCMVDLLGR 347 (571)
Q Consensus 338 ~~~li~~~~~ 347 (571)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.011 Score=46.06 Aligned_cols=81 Identities=19% Similarity=0.065 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccC--------chHHHHHHHHHHHhCCCCCCcch
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS--------SLQLGKQVHQLVFKSPLCKDTTA 235 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 235 (571)
+....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-....+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 899999999999876542 34456778888888889999999
Q ss_pred HHHHHHHHHh
Q 008280 236 LTPLISMYCK 245 (571)
Q Consensus 236 ~~~li~~y~~ 245 (571)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887664
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.96 E-value=0.32 Score=45.16 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKM----PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
.+...|.+.|.+..|..-++.+ |..|. ......+..+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4566677788877777666665 32222 356667778888888888887766544
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.95 E-value=0.11 Score=50.74 Aligned_cols=160 Identities=20% Similarity=0.137 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 238 PLISMYCKCGDLEDACKLFLEIQRK-------DVVTWNAMISGYAQ---HGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 238 ~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
.|+-.|-...+++...++++.+... ....-...+-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677788888888888877653 12222233445555 7888888888888655555667777766665
Q ss_pred HHHh---------cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH----HHHH---HhC-------CCC
Q 008280 308 ACNH---------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA----VDLI---KKM-------PFK 364 (571)
Q Consensus 308 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~---~~~-------~~~ 364 (571)
.|-. ....++|...|.+.- .+.|+..+--.++..+.-.|...+. .++- ... .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223566666666543 4455544433344444444432221 2221 110 112
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 400 (571)
.|-..+.+++.++.-.|+.+.|.+.+++++++.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344455778888888888888888888888876643
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.93 E-value=0.0013 Score=42.45 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHH
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~ 410 (571)
.+|..+..+|...|++++|++.++++++.+|+++. .+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~-a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE-AWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH-HHHHhhh
Confidence 46788999999999999999999999999999987 7777654
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.93 E-value=0.18 Score=43.15 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=19.1
Q ss_pred HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH
Q 008280 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 306 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
...+...|...+|..-|+.... .-|+...-.....++.++|+.++|
T Consensus 167 aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHH
Confidence 3344444444444444444432 233333333334444444444443
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.92 E-value=0.0037 Score=61.47 Aligned_cols=64 Identities=16% Similarity=-0.034 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc--hhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
...|+.+..+|...|++++|+..|+++++++|++.. .+|..++.+|.+.|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555542 0255555555555555555555555544
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.81 E-value=0.019 Score=57.14 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=94.5
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 302 (571)
.+.+......+++......+++.+..++-+.... -..+..+++..|.+.|..++++.++..=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666777777777888898888776532 1345569999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc
Q 008280 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 348 (571)
Q Consensus 303 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 348 (571)
+.|+..+.+.|++..|.++...|... ....++.++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999999888765 5556666665555555554
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.25 Score=47.81 Aligned_cols=54 Identities=6% Similarity=-0.108 Sum_probs=24.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhccCchHHHHHHHHHHHhCC
Q 008280 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG--CSHLSSLQLGKQVHQLVFKSP 228 (571)
Q Consensus 172 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g 228 (571)
++.-.|++++|...-...++.. +. ..+...+++ +-...+.+.+..-+++.++.+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 4455566666665554444432 11 112222222 223455566666666655543
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.96 Score=47.31 Aligned_cols=321 Identities=12% Similarity=0.092 Sum_probs=187.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCC---cchHHHHHHHHHHcCC---hHHHHHHHhhCCC--CChhHHHHHHHHHHh
Q 008280 73 WNTMISGFVQKKNMAKARDLFLAMPEKN---SVSWSAMISGYIECGQ---LDKAVELFKVAPV--KSVVAWTAMISGYMK 144 (571)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 144 (571)
-..+|+-++..+.+..|+++-..+..|- ...|.....-+.+..+ -+-+..+-+++.. ..-.+|..+..--..
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3456777777888999999888886654 4556666666665532 2223333334433 344667777777778
Q ss_pred cCCHHHHHHHHhhCCCC--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHH
Q 008280 145 FGKVDLAEKLFDEMPTK--------NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 216 (571)
+|+.+.|..+++.=+.. +..-+..-+.-..+.|+.+-...++..+... .+...|...+ .+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchh
Confidence 89999999888765431 1122344455556667766666666555442 1111121111 23344
Q ss_pred HHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHH-Hhh-----CCCChhhHHHHHHHHHHcCC----------
Q 008280 217 GKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLF-LEI-----QRKDVVTWNAMISGYAQHGK---------- 279 (571)
Q Consensus 217 a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~-~~~-----~~~~~~~~~~li~~~~~~g~---------- 279 (571)
|..+|.+..+. +. ..|-+.|-...+...+-.+- +.. ...-..........+++...
T Consensus 591 a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55555554442 21 12333333333332222111 110 01111122223333333322
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 008280 280 GEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 358 (571)
Q Consensus 280 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 358 (571)
..+-+.+.+.+.. .|......|.+-.+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 2222333333322 2334455566677777888899999988766553 478888888889999999999988888
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHH
Q 008280 359 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 359 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
++.. .+.-|.-...+|.+.|+.++|.+++-+. + -+.....+|.+.|++.+|.++--
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv-------~--~l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV-------G--GLQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhcc-------C--ChHHHHHHHHHhccHHHHHHHHH
Confidence 8763 2556777888999999999999888655 2 23367788999999999987643
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.71 E-value=0.7 Score=45.43 Aligned_cols=397 Identities=13% Similarity=0.135 Sum_probs=202.7
Q ss_pred HhCCCCHHHHHHHHhhCCC---CC------hhhHHHHHHHHHcCCCCHHHHHHHHhhCCCC-ChhhHHHHHHHH--HcCC
Q 008280 17 AKQRGKLKDAQELFDKIPQ---PD------VVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-DTASWNTMISGF--VQKK 84 (571)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~~--~~~g 84 (571)
.+.+ ++++|.++|.++-+ .+ .+.-+.++++|..+ +.+.....+....+. ....|-.|..+. -+.+
T Consensus 17 qkq~-~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQK-KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHh-hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 3566 99999999988854 22 23356788888876 444444443333221 123344444433 3678
Q ss_pred CHHHHHHHHhhCCCC------------------CcchHHHHHHHHHHcCChHHHHHHHhhCC--------CCChhHHHHH
Q 008280 85 NMAKARDLFLAMPEK------------------NSVSWSAMISGYIECGQLDKAVELFKVAP--------VKSVVAWTAM 138 (571)
Q Consensus 85 ~~~~A~~~~~~m~~~------------------d~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l 138 (571)
++.+|++.|..-... |...=+..+..+...|++.+++.+++++. .-++.+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888877544211 11122445677888899999998887764 2477888887
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC-------------------------------hhHHHHHHH
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW-------------------------------AEDGLKLLR 187 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------------------------------~~~A~~~~~ 187 (571)
+-++++.--++.- +.+...=..-|.-||..|.+.=. ..--++++.
T Consensus 174 vlmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 174 VLMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 7777654322211 11111111223344444433211 111111222
Q ss_pred HHHHCCCCCCHhH-HHHHHHHHhccCchHHHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhhC--
Q 008280 188 MMIGLGIRPNASS-LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK----DTTALTPLISMYCKCGDLEDACKLFLEIQ-- 260 (571)
Q Consensus 188 ~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 260 (571)
.....-+.|+... ...+.....+ +.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2222223333221 1222222222 4455555544444332111 12234444555555666666666655443
Q ss_pred CCChh-------hHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH-HH---HHHHHhcCc-HHHHHHHHHH
Q 008280 261 RKDVV-------TWNAMISGYAQ----HGKGEKALRLFDKMKDEGMKPDSITFV-AL---LLACNHAGL-VDLGIQYFDS 324 (571)
Q Consensus 261 ~~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l---l~a~~~~g~-~~~a~~~~~~ 324 (571)
+|+.. +-..+-+..+. .-+..+=+.++++....++ |..-.. .+ ..-+-+.|. -++|.++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 22221 11112222221 1122233444444443322 221111 11 122334444 6777888877
Q ss_pred hHHhcCCCCChHhHHHHHH----HHHHc---C---CHHHHHHHHHhCCCCC----CHhHHHHHHHH--HHhcCCHhHHHH
Q 008280 325 MVNDYGIAAKPDHYTCMVD----LLGRA---G---KLVEAVDLIKKMPFKP----QPAIFGTLLSA--CRVHKRLDLAEF 388 (571)
Q Consensus 325 ~~~~~~~~~~~~~~~~li~----~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~ 388 (571)
+.+- -+-|..+-+.+.. .|..+ . ++-+-..++++.++.| +...-|.|..| +..+|++.++.-
T Consensus 406 il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 406 ILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7642 1223333332221 22211 1 1122233444555443 23456667666 578999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 389 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
.-.-+.+..| .+. +|..++.+.....++++|..++..+
T Consensus 484 ys~WL~~iaP-S~~-~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 484 YSSWLTKIAP-SPQ-AYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhCC-cHH-HHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 9999999999 556 9999999999999999999999754
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.033 Score=52.08 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ-PAIFGTLL 374 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 374 (571)
.|...+......|++++|...|+.+.+.+.-.+- +..+..+...|...|++++|...|+.+ |..|. ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445567888888888887765321111 345667778888888888888888777 22111 34555566
Q ss_pred HHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 375 SACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
..+...|+.+.|...++++++..|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999888864
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.65 E-value=0.024 Score=50.02 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=71.5
Q ss_pred HHHHHhh--CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------------
Q 008280 253 CKLFLEI--QRKDVVTWNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG------------ 313 (571)
Q Consensus 253 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------ 313 (571)
...|+.. ..++-.+|..++..|.+. |+.+=....+..|.+-|+.-|..+|+.||..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556665 457778888888888754 677777788889999999999999999998765421
Q ss_pred ----cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCC
Q 008280 314 ----LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350 (571)
Q Consensus 314 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 350 (571)
+.+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 33557777777765 4777887777777777766554
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.16 Score=45.98 Aligned_cols=165 Identities=7% Similarity=-0.077 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCC--CCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQR--KDV--------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 305 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 305 (571)
+++|...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+..+.+.++...+.+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566665554444444444443222 122 23345555555666777777777777776555566666667
Q ss_pred HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHh-----HHHHHHHHHHcCCHHHHHHHHHhCCCC--CCHhHHHHHHHHHH
Q 008280 306 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH-----YTCMVDLLGRAGKLVEAVDLIKKMPFK--PQPAIFGTLLSACR 378 (571)
Q Consensus 306 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~ 378 (571)
.+.-.+.|+.+.|..+|+...+. .-..+... .......|.-++++.+|...+.+.+.. .|+...|.-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 77777778877777777766543 22222222 222233344556666666666666322 12233333222334
Q ss_pred hcCCHhHHHHHHHHHhccCCCCC
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
-.|+...|++..+.+++..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccc
Confidence 45666667777777776666543
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.63 E-value=0.014 Score=55.88 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=85.4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHh----CCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHhhC-------CCC--hh
Q 008280 200 SLSSVLLGCSHLSSLQLGKQVHQLVFK----SPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQ-------RKD--VV 265 (571)
Q Consensus 200 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~--~~ 265 (571)
.|..+-+.|.-.|+++.|...|+.-+. .|- ......+..|.++|.-.|+++.|.+.|+... .+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555567889999888875432 221 1234567778888888999999998887543 232 34
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKD----EG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 326 (571)
+..+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|..+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888888888899888766321 11 12234567788889999999888887765443
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.61 E-value=0.0075 Score=44.02 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=49.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 342 VDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
-.+|.+.+++++|.++++++ ...| ++..|......+...|++++|...++++++..|+++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 35678888899998888887 3333 4567778888889999999999999999999998764
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.02 Score=50.43 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=57.6
Q ss_pred HHHHhhC--CCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-------------
Q 008280 152 EKLFDEM--PTKNLVTWNAMIAGYVEN-----SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL------------- 211 (571)
Q Consensus 152 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~------------- 211 (571)
...|++. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666666666666543 55565666677777777777777777777765331
Q ss_pred ---CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 008280 212 ---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246 (571)
Q Consensus 212 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 246 (571)
.+.+-|..++++|...|+-||..++..|++.+++.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 23344566666666666666666666666665443
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.52 Score=42.42 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=28.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 354 (571)
+..-|.+.|.+..|..-++.+++++.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455567777777777777777765422222 23445666666676666644
No 216
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=1.4 Score=46.31 Aligned_cols=67 Identities=9% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 380 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 380 (571)
....+..|.+.|-+++-.-++.+|- .++.+|.-+--+.+++++|+++.++- .|...|..||.-+...
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDK 703 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcC
Confidence 4456666777777777776666662 23444555555667788888777763 5788888888776544
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.41 E-value=1.4 Score=45.15 Aligned_cols=376 Identities=12% Similarity=0.073 Sum_probs=211.3
Q ss_pred CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHH
Q 008280 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTA-SWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMIS 109 (571)
Q Consensus 36 ~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~ 109 (571)
-+...|+.+|..--.. .+++.++.+++.+.. |-.. -|-.....=.+-|..+.+.++|++..+ ..+..|...+.
T Consensus 43 ~~f~~wt~li~~~~~~-~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSI-EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCch-hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445677766654444 555666666666654 3322 234444444566777777777776654 23445555444
Q ss_pred HHH-HcCChHHHHHHHhhCCC------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHH---c---
Q 008280 110 GYI-ECGQLDKAVELFKVAPV------KSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE---N--- 176 (571)
Q Consensus 110 ~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~--- 176 (571)
-+. ..|+.+.....|+.+.. .....|...+..-..++++.....+++++.+-....++..-.-|.+ .
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 332 34666666666665531 1335566666666667777777777777665333333333222221 1
Q ss_pred ---CChhHHHHHHHHHH--------------------HCCCCCCHhHHH--HHHHHH-------hccCchHHHHHHHHHH
Q 008280 177 ---SWAEDGLKLLRMMI--------------------GLGIRPNASSLS--SVLLGC-------SHLSSLQLGKQVHQLV 224 (571)
Q Consensus 177 ---g~~~~A~~~~~~m~--------------------~~g~~pd~~t~~--~ll~~~-------~~~~~~~~a~~~~~~~ 224 (571)
-..+++.++-.... ..+-+.+..+.. .+...+ ...-.....+..++.-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 11222222211111 111011111111 111111 1111122222233333
Q ss_pred HhCC---C----CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 008280 225 FKSP---L----CKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 294 (571)
Q Consensus 225 ~~~g---~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 294 (571)
++.. + +++..+|...++.-.+.|+.+...-+|++..-+ -...|-..+.-....|+.+-|..++....+--
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 3321 1 224567888888889999999999999998754 23456666655556688888888877765543
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHhH
Q 008280 295 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAV---DLIKKM-PFKPQPAI 369 (571)
Q Consensus 295 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~ 369 (571)
++-.+.+-..-..-+...|+++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++... +.+-+..+
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i 438 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGI 438 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcch
Confidence 3333332222223456778999999999999875 3 55 334344566778889999888 555444 22233333
Q ss_pred HHHHHH-----HHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 370 FGTLLS-----ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 370 ~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
...+.- .+...++.+.|..++.++.+..|++.. .|..+.+.....+
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~-~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV-LYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH-HHHHHHHHHHhCC
Confidence 333222 245678999999999999999999987 8888888876655
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.03 Score=53.96 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=80.0
Q ss_pred HHHHHcCCHHHHHHHHHhC--------CCC---------CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhH
Q 008280 343 DLLGRAGKLVEAVDLIKKM--------PFK---------PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~--------~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 405 (571)
..|.+.|++..|..-|++. +.. .-..+++.|...|.+.+++..|+....++++++|+|+. ++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-AL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-AL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-HH
Confidence 3455666666666655553 111 12345667777888999999999999999999999998 99
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHH
Q 008280 406 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477 (571)
Q Consensus 406 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~ 477 (571)
+.=+.+|...|.++.|+..|+++.+.. |.+..|...|..+.+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~--------------------------P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE--------------------------PSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987632 4456666666666666654
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.063 Score=45.46 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
.....++..+...|++++|...+++++..+|-+.. .|..++.+|...|+..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~-~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEE-AYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35566777788999999999999999999999988 99999999999999999999998875
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.30 E-value=0.4 Score=43.15 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008280 239 LISMYCKCGDLEDACKLFLEIQR--KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312 (571)
Q Consensus 239 li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 312 (571)
....+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...++++.+.-..-....+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 44455566777777777776653 11 2344455666677777777777777766542211112222222222211
Q ss_pred Cc-------------HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 008280 313 GL-------------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 379 (571)
Q Consensus 313 g~-------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 379 (571)
.. ..+|...|+.++++ |=......+|...+..+...- ..--..+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11 11233333333332 222222333333222221000 0011124456788
Q ss_pred cCCHhHHHHHHHHHhccCCCCCc--hhHHHHHHHHhhccChhHHH
Q 008280 380 HKRLDLAEFAAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVA 422 (571)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~a~ 422 (571)
.|.+..|..-++.+++.-|+.+. .+...++.+|.+.|..+.+.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999998888642 14567888899999887543
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0068 Score=44.95 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=10.9
Q ss_pred hHHHHHHHHhhccChhHHHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
++..++.+|...|++++|.+.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444443
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.27 Score=45.77 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-CHhHHH
Q 008280 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG---KLVEAVDLIKKM-PFKP-QPAIFG 371 (571)
Q Consensus 297 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~ 371 (571)
-|...|..|..+|...|+.+.|..-|....+ -..+++..+..+..++.... ...++.++|+++ ...| |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3556777777777777777777777777765 23444666666666654432 345677777776 3334 345566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
-|...+...|++.+|...++.|++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 666778888888888888888888777665
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.20 E-value=0.084 Score=43.56 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh
Q 008280 342 VDLLGRAGKLVEAVDLIKKM----PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414 (571)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 414 (571)
.....+.|++++|.+.|+.+ |..|- ...-..|+.+|...+++++|...+++.++++|.++...|.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34455678888888888877 32222 345666888999999999999999999999998876456555555443
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.11 E-value=1.4 Score=42.46 Aligned_cols=280 Identities=13% Similarity=0.116 Sum_probs=147.3
Q ss_pred HHHHHHHHH--cCCCHHHHHHHHhhCC---CCCcchHHHHHHHHH--HcCChHHHHHHHhhCCCCChhHH---HHHHHHH
Q 008280 73 WNTMISGFV--QKKNMAKARDLFLAMP---EKNSVSWSAMISGYI--ECGQLDKAVELFKVAPVKSVVAW---TAMISGY 142 (571)
Q Consensus 73 ~~~li~~~~--~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~ 142 (571)
|.+|-.++. -.|+-..|.++-.+.. ..|......++.+-. -.|+++.|.+-|+.|......-. ..|.---
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleA 164 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 444444443 4577777777765543 345555666655443 35888889888888874322111 1222222
Q ss_pred HhcCCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhH--HHHHHHHHh---ccCc
Q 008280 143 MKFGKVDLAEKLFDEMPT--K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG-IRPNASS--LSSVLLGCS---HLSS 213 (571)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t--~~~ll~~~~---~~~~ 213 (571)
-+.|..+.|+..-++.-. | =.-.|.+.+...+..|+|+.|+++++.-+... +.++..- -..++.+-+ -..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 356777777666655443 2 23477888888899999999999888766532 3444332 122332221 1224
Q ss_pred hHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhhCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 214 LQLGKQVHQLVFKSPLCKDTT-ALTPLISMYCKCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 214 ~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
...|+..-.+..+. .||.. .-..-...|.+.|++.++-.+++.+-+. .+..| .+..+++.|+ .++.-+++.
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHH
Confidence 44555554444443 33322 2222345666777777777777766532 22222 2222333333 333333333
Q ss_pred HH-cCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc-CCHHHHHHHHHhC
Q 008280 291 KD-EGMKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA-GKLVEAVDLIKKM 361 (571)
Q Consensus 291 ~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 361 (571)
.. ..++||. .+...+..+....|++..|..--+... ...|....|..|.+.-... |+-.++...+-+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 22 1134433 344455556666666666655544443 3456666666555554332 6666665555444
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.09 E-value=0.0078 Score=44.62 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-------P-FKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
..+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 457889999999999999999999876 2 1133 467888999999999999999999998764
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.80 E-value=0.14 Score=41.84 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH
Q 008280 294 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344 (571)
Q Consensus 294 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 344 (571)
...|+..++.+++.+++..|++..|.++.+...+.|+++.+...|..|++=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 355667777777777777777777777777777767666666666666543
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.71 E-value=1.5 Score=39.57 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=117.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR-----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
..........+...+++..+...+..... .....+..+...+...++...+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34455556666666666666666655432 2334555555666666667777777776665433321 11112222
Q ss_pred -HHHhcCcHHHHHHHHHHhHHhcCC--CCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHhcC
Q 008280 308 -ACNHAGLVDLGIQYFDSMVNDYGI--AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ--PAIFGTLLSACRVHK 381 (571)
Q Consensus 308 -a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g 381 (571)
.+...|+++.+...+...... .. ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 566777777777777776431 11 112333444444466677777777777666 22233 466777777777777
Q ss_pred CHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 382 ~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+++.|...+.......|.... .+..+...+...|.++++...+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAE-ALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHH-HHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888887776444 566666666666677777777766654
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.70 E-value=0.11 Score=42.29 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhH--------------HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC---
Q 008280 299 SITFVALLLACNHAGLVDLGIQYFDSMV--------------NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--- 361 (571)
Q Consensus 299 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 361 (571)
..++..++.++++.|+++....+.+..- ......|+..+..+++.+|+..|++..|+++.+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555554443321 11234455556666666666666666666655544
Q ss_pred -CCCCCHhHHHHHHHH
Q 008280 362 -PFKPQPAIFGTLLSA 376 (571)
Q Consensus 362 -~~~p~~~~~~~l~~~ 376 (571)
+++-+..+|..|+.=
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333345555555543
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.14 Score=49.52 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=77.2
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
..++..|...|.+.+++.+|++..++. .. ++|+-..-.-..+|...|+++.|+..|+++++++|+|-. +-..|+.+-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka-~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA-ARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Confidence 345667888899999999999888776 22 356677777788999999999999999999999999987 888888887
Q ss_pred hhccChhHH-HHHHHHHHh
Q 008280 413 AAMKKWDDV-ARIRLSMKE 430 (571)
Q Consensus 413 ~~~g~~~~a-~~~~~~m~~ 430 (571)
.+.....+. .++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 777666654 778888864
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.66 E-value=1.6 Score=39.44 Aligned_cols=199 Identities=18% Similarity=0.129 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC--C-hhhHHHHHH-H
Q 008280 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--D-VVTWNAMIS-G 273 (571)
Q Consensus 199 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~-~ 273 (571)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+...... + ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444555555555554444432 12333444455555566666666777766665542 1 122333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCC
Q 008280 274 YAQHGKGEKALRLFDKMKDEGM--KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGK 350 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 350 (571)
+...|++++|...|.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7788888888888888754221 112334444444566778888888888888753 333 36777788888888888
Q ss_pred HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 351 LVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 351 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 89988888776 33344 445555555555777799999999999888885
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.087 Score=48.32 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC---CCchhHHH
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA---NAAGCYVQ 407 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~~ 407 (571)
|+.-++. .+.|++.+|...|... ...||...| |..++...|+++.|...|..+.+-.|+ -|. .+.-
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd-allK 220 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD-ALLK 220 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChH-HHHH
Confidence 4443332 3445566666555544 122444444 556666666666666666666654433 344 5666
Q ss_pred HHHHHhhccChhHHHHHHHHHHh
Q 008280 408 LANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|+.+..+.|+.++|..+++++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 67777777777777777766655
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.54 E-value=1 Score=36.39 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=83.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-|.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777777653 244455656554444444455555555554422222 34555555
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
...+-.++ .+.......+......|+-+.-.+++..+.+-+..+|. ....++.+|.+.|...++-+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~-~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPE-FLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HH-HHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55554443 34455666777888999999988999888764444455 8899999999999999999999999998875
No 233
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.53 E-value=2.4 Score=43.71 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=67.4
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc---------hh
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA---------GC 404 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---------~~ 404 (571)
+.++...+..-+.+...+.-|-++|.+|+.. .+++......+++++|..+.++.-+.-|+-.. --
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3455556666677788888999999999632 34566677889999999999988776665322 02
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 405 YVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
|..--.+|-++|+-.||.++++++....+
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 33445678888999999999888865433
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.49 E-value=0.14 Score=41.05 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=68.7
Q ss_pred HHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC-CCCCc--hhHHHHHHHHhhccC
Q 008280 343 DLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-PANAA--GCYVQLANIYAAMKK 417 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~--~~~~~l~~~~~~~g~ 417 (571)
-+++..|+++.|++.|.+. . .+..+..||.-..+++-.|+.++|+.-+++++++. |.... .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888776 1 22456788888899999999999999999888864 33111 256777888889999
Q ss_pred hhHHHHHHHHHHhCCC
Q 008280 418 WDDVARIRLSMKENNV 433 (571)
Q Consensus 418 ~~~a~~~~~~m~~~~~ 433 (571)
-+.|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888776654
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.8 Score=42.63 Aligned_cols=122 Identities=9% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH---HHHHHHhcCCH
Q 008280 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT---LLSACRVHKRL 383 (571)
Q Consensus 307 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 383 (571)
......|++.++...|...... .+-+...-..|++.|...|+.+.|..++..+|.+-...-|.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456678888888888887763 333456667788888999999999999998865443333333 23333444433
Q ss_pred hHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 384 ~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
.+.. .+++-...+|++.. .-..|+..|...|+.++|.+.+-.+.+++
T Consensus 220 ~~~~-~l~~~~aadPdd~~-aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVE-AALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHH-HHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3332 23444567898888 88899999999999999998877766543
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.33 E-value=0.21 Score=42.18 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH----hcCCCCChHh
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN----DYGIAAKPDH 337 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 337 (571)
+...++..+...|++++|+.+.+.+.... +.|...+..++.++...|+..+|.+.|+.+.+ ..|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666777777777777766643 33556667777777777777777776655432 3466666554
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.29 E-value=3.4 Score=40.89 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC--CChhhHHHHHHH--HHcCCCCHHHHHHHHhhCCC-----------------
Q 008280 9 WNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSC--ILLNSDDVVAAFDFFQRLPI----------------- 67 (571)
Q Consensus 9 ~~~l~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~--~~~~~g~~~~A~~~~~~m~~----------------- 67 (571)
.+.++++|-.. +++.-........+ | ...|-.|..+ ..+. +++..|.+.+..-.+
T Consensus 49 ~grilnAffl~--nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 49 GGRILNAFFLN--NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred hhHHHHHHHHh--hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 45566776653 46665555554443 3 2223333332 2355 788888877754321
Q ss_pred -CChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHH
Q 008280 68 -KDTASWNTMISGFVQKKNMAKARDLFLAMPE--------KNSVSWSAMISGYIE 113 (571)
Q Consensus 68 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~d~~~~~~li~~~~~ 113 (571)
+|-+.-+..+.++...|++.+++.++++|.+ -|..+|+.++-.+.+
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 2333446677788888999999988888743 366777765544433
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=2.1 Score=38.69 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-hHHHHHHHHHHhcCCHhHHHHHHHHHhc----cCCCCCchh
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKMP-------FKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN----LNPANAAGC 404 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 404 (571)
.+..+...|.+..++++|-..|.+-+ --|+. ..+.+.|-.+.-..++..|+..++.-.+ ..|++.. +
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r-~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR-S 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH-H
Confidence 34445556677777777766655441 11232 2344555556666788888888887544 3466665 7
Q ss_pred HHHHHHHHhhccChhHHHHHH
Q 008280 405 YVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~ 425 (571)
...|+.+| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77888777 456777766654
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.21 E-value=0.75 Score=38.06 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHhccCCCCC
Q 008280 383 LDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~ 401 (571)
...|...|++++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777788888888763
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.20 E-value=3.6 Score=40.65 Aligned_cols=400 Identities=11% Similarity=0.097 Sum_probs=208.7
Q ss_pred HHHHhhCCC--CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChh---hHHHHHHHHHcCCCHHHHHHHHhhCCC--C
Q 008280 27 QELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA---SWNTMISGFVQKKNMAKARDLFLAMPE--K 99 (571)
Q Consensus 27 ~~~~~~~~~--~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 99 (571)
.++-+++.+ .|..+|-.||.-|-.+ |..++-++++++|..|-+. +|...+++=....++.....+|.+-.. -
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 356666665 4667888888888888 8888888888888877543 577777766667788888888876643 3
Q ss_pred CcchHHHHHHHHHHcCChH------HHHHHHhhCC------CCChhHHHHHHHHHH---------hcCCHHHHHHHHhhC
Q 008280 100 NSVSWSAMISGYIECGQLD------KAVELFKVAP------VKSVVAWTAMISGYM---------KFGKVDLAEKLFDEM 158 (571)
Q Consensus 100 d~~~~~~li~~~~~~g~~~------~A~~~~~~~~------~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~ 158 (571)
+...|...+.--.+....- ...+.|+-.. +.....|+..+...- .+.++|..++.+.++
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 5666666665444433111 1112222221 223344555444321 234456667777776
Q ss_pred CC----------CCHHHHHHHHHHHHH---cC----ChhHHHHHHHHHHH--CCCCC----CHhHHHHHHH---------
Q 008280 159 PT----------KNLVTWNAMIAGYVE---NS----WAEDGLKLLRMMIG--LGIRP----NASSLSSVLL--------- 206 (571)
Q Consensus 159 ~~----------~~~~~~~~li~~~~~---~g----~~~~A~~~~~~m~~--~g~~p----d~~t~~~ll~--------- 206 (571)
.. +|-..|..=+.-... .| -+-.|...+++... .|+.. +..|++.+-.
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 54 122222222221111 11 13455556665543 23321 1222222111
Q ss_pred --HHhcc-----C-ch-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CCh-----------
Q 008280 207 --GCSHL-----S-SL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDV----------- 264 (571)
Q Consensus 207 --~~~~~-----~-~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----------- 264 (571)
-=... | -. ...--+|++++.. +.....+|----.-+...++-+.|++..+.-.+ |+.
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~ 346 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV 346 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence 00000 0 00 1111122222221 111222232222233345666667666654332 110
Q ss_pred -------hhHHHHHHHHHH---cCChHHHHHH------HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHh
Q 008280 265 -------VTWNAMISGYAQ---HGKGEKALRL------FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 265 -------~~~~~li~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 328 (571)
.+|..++..+.+ .++.+.+-.. ..+..-....--...|...+++-.+..-++.|+.+|-+..+.
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 012222222211 1111111111 111100000111234556677777777888999999998775
Q ss_pred cC-CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHhHHHHHHHHHhcc-CCCCCchh
Q 008280 329 YG-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPA-IFGTLLSACRVHKRLDLAEFAAMNLFNL-NPANAAGC 404 (571)
Q Consensus 329 ~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~ 404 (571)
+ ..+++..++++++-++ .|+..-|.++|+-- ..-||.. .-+..+.-+...++-+.|..+|+..++. ........
T Consensus 427 -~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 427 -GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred -CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 5 6778888999988664 68888899998764 2235543 3455666677888899999999966542 11111117
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 405 YVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|..++.--+.-|+...+..+=+.|.+
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 88888888888888877777666654
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.20 E-value=0.13 Score=50.88 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=37.9
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455566666666666666666666553 344442 24666666666666666666666666664
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.08 E-value=0.49 Score=48.00 Aligned_cols=133 Identities=16% Similarity=0.209 Sum_probs=86.8
Q ss_pred HHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCH
Q 008280 273 GYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 351 (571)
.....|+++++.+..+.-. -..+ | ..-...++.-+.+.|..+.|+++-..-.. -.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3455778888776665211 1111 2 33466777778888888888776443222 24566788999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 352 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 352 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
+.|.++.++. ++...|..|......+|+++.|+..|.+. . -+..|+-.|.-.|+.+.-.++-+....+
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~-d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------K-DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T--HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------c-CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999888776 47789999999999999999999999887 2 5778888888888887777776666655
Q ss_pred C
Q 008280 432 N 432 (571)
Q Consensus 432 ~ 432 (571)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 5
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=95.03 E-value=0.36 Score=40.90 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=41.0
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 008280 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251 (571)
Q Consensus 172 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 251 (571)
-+.+.|++++|..+|+-+.-.+ .-+..-+..+...+-..+.+++|...|......+ ..|+...--....|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 3445555666655555544432 1122222333333344455555555555444433 2333333445555556666666
Q ss_pred HHHHHHhhC
Q 008280 252 ACKLFLEIQ 260 (571)
Q Consensus 252 A~~~~~~~~ 260 (571)
|+..|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 666555544
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.98 E-value=0.055 Score=32.25 Aligned_cols=33 Identities=18% Similarity=0.019 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 400 (571)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888764
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=3 Score=38.95 Aligned_cols=174 Identities=14% Similarity=0.077 Sum_probs=107.5
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCC
Q 008280 252 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331 (571)
Q Consensus 252 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 331 (571)
..+.+++...+....--.-.......|++.+|..+|......... +...-..+..++...|+++.|..++..+..+. -
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~ 199 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-Q 199 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-h
Confidence 344445444432222223344567788899999999888765322 34455677888899999999999988775421 1
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc--CCCCCchhHHHH
Q 008280 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNL--NPANAAGCYVQL 408 (571)
Q Consensus 332 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~~l 408 (571)
.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|...+-.++.. +-++.. .-..|
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~-~Rk~l 278 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE-ARKTL 278 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH-HHHHH
Confidence 1111112234555666555555555555553345 5666777888888999999998888777664 344445 77788
Q ss_pred HHHHhhccChhH-HHHHHHHH
Q 008280 409 ANIYAAMKKWDD-VARIRLSM 428 (571)
Q Consensus 409 ~~~~~~~g~~~~-a~~~~~~m 428 (571)
+..+.-.|.-+. +.+.+++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 888877775554 33334443
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.97 E-value=0.04 Score=32.98 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 247
>PRK09687 putative lyase; Provisional
Probab=94.94 E-value=3.5 Score=39.15 Aligned_cols=79 Identities=11% Similarity=0.007 Sum_probs=33.1
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCCh----HHHHHHHhhC--CCCChhHHHHHH
Q 008280 66 PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL----DKAVELFKVA--PVKSVVAWTAMI 139 (571)
Q Consensus 66 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~----~~A~~~~~~~--~~~~~~~~~~li 139 (571)
..+|..+....+.++.+.|..+-...+..-...+|...-...+.++.+.|+. +++...+..+ .+++..+..+.+
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3444445444555554444332222222222233444444444455555542 2344444433 234444444444
Q ss_pred HHHHh
Q 008280 140 SGYMK 144 (571)
Q Consensus 140 ~~~~~ 144 (571)
.+++.
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44443
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.92 E-value=1.2 Score=45.23 Aligned_cols=130 Identities=13% Similarity=0.143 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHH
Q 008280 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183 (571)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 183 (571)
.+.++.-+.+.|..+.|+++-. |+ ..-.+...++|+++.|.++-++.. +...|..|.....+.|+++-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 5555666666666666665432 22 223344556777777776665544 4557777777777777777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 008280 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258 (571)
Q Consensus 184 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 258 (571)
+.|.+... |..++-.|...|+.+.-.++.......| -++....++...|+.++..+++.+
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77665321 3444444555566666656555555554 133344444445666665555543
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=94.91 E-value=0.55 Score=46.76 Aligned_cols=63 Identities=8% Similarity=-0.091 Sum_probs=37.2
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
|+.....+..+....++++.|...|+++..++|+.+. +|...+....-.|+.++|.+.+++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~-~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS-LYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444555455555566666666666666666665 66666666666666666666655533
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.65 E-value=1.8 Score=44.55 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHH----hcCcHHHHHHHHHHhHHhcCCCCChHh
Q 008280 268 NAMISGYAQHGKGEKALRLFDKMKDEG-MKPDS-----ITFVALLLACN----HAGLVDLGIQYFDSMVNDYGIAAKPDH 337 (571)
Q Consensus 268 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~ 337 (571)
..+++...-.|+-+.+++.+.+-.+.+ +.-.. .+|..++..+. ...+.+.+.+++..+.++ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 344444555566666666666554422 22111 12222222222 245778899999988875 355444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhCCC-C-----CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHH-HHH
Q 008280 338 YT-CMVDLLGRAGKLVEAVDLIKKMPF-K-----PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV-QLA 409 (571)
Q Consensus 338 ~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-~l~ 409 (571)
|. .-...+...|++++|++.|++.-. + .....+--+...+....++++|...|.++.+.+.-... .|. ..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka-~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA-FYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH-HHHHHHH
Confidence 43 345667778999999999987521 1 11233444556678899999999999999987665544 444 445
Q ss_pred HHHhhccCh-------hHHHHHHHHHHh
Q 008280 410 NIYAAMKKW-------DDVARIRLSMKE 430 (571)
Q Consensus 410 ~~~~~~g~~-------~~a~~~~~~m~~ 430 (571)
-+|...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 556678888 888888877653
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.63 E-value=2.3 Score=35.53 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc-CCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA-GKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 378 (571)
...++..|.+.+.++++..++..+.. +...++.+... ++++.|.+++.+. .+...|..++..+.
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 33455555555655555555554421 11122223333 5666666666653 24456665555543
No 252
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=14 Score=44.58 Aligned_cols=309 Identities=11% Similarity=0.086 Sum_probs=173.0
Q ss_pred HHHHHHHHcCChHHHHHHHhhC----CCCCh--hHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCHHHHHHHHHHHHHcCC
Q 008280 106 AMISGYIECGQLDKAVELFKVA----PVKSV--VAWTAMISGYMKFGKVDLAEKLFDE-MPTKNLVTWNAMIAGYVENSW 178 (571)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 178 (571)
++..+-.+++.+.+|...+++- .+.+. ..+..+...|+..+++|...-+... ...++. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4455666788899999888873 22222 3344555589999998888877763 334432 234555667899
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHH-HHHHHhcCCHHHHHHHHH
Q 008280 179 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL-ISMYCKCGDLEDACKLFL 257 (571)
Q Consensus 179 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~~~ 257 (571)
+..|..-|+++.+.+ ++...+++-++......+.++...-..+-.... ..+...-++++ +.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 333667777777776777776665533333222 22333333332 344466777777766655
Q ss_pred hhCCCChhhHHHH-H-HHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH----------
Q 008280 258 EIQRKDVVTWNAM-I-SGYAQHG--KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD---------- 323 (571)
Q Consensus 258 ~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~---------- 323 (571)
..+...|... + ....+.. +.-.-.+..+.+++.-+. =+.+|+..|.+..+.++.-
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566666655 2 2222221 111122233333322111 1122222222222211111
Q ss_pred HhHHhcCCCCCh------HhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCCHhHHHH
Q 008280 324 SMVNDYGIAAKP------DHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ-----PAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 324 ~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
......+..++. .-|..-+..-....+..+-+--+++. ..+|+ ..+|....+.++..|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111111223321 12222222111111122211112211 11222 4689999999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 389 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
..-++.+..+. . .+...+......|+...|..++++-.+...
T Consensus 1692 all~A~e~r~~--~-i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRLP--E-IVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhcccc--h-HHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99888887743 4 899999999999999999999998876544
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=94.58 E-value=2 Score=42.94 Aligned_cols=159 Identities=9% Similarity=0.157 Sum_probs=104.4
Q ss_pred hhH--HHHHHHHHHc-----CChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHh---------cCcHHHHHHHHHHhH
Q 008280 265 VTW--NAMISGYAQH-----GKGEKALRLFDKMKD-EGMKPDSI-TFVALLLACNH---------AGLVDLGIQYFDSMV 326 (571)
Q Consensus 265 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 326 (571)
..| ..++.+.... ...+.|+.+|.+... +...|+.. .|..+..++.. ..+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554431 134578888888772 23456543 33333222211 234456667766666
Q ss_pred HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchh
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 404 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 404 (571)
+ --+-|+.....+..++.-.|+++.|...|++. ...|| +.+|......+.-.|+.++|.+.+++.++++|......
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 33456777778888888889999999999998 45566 46777777778889999999999999999999865412
Q ss_pred HH-HHHHHHhhccChhHHHHHHH
Q 008280 405 YV-QLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 405 ~~-~l~~~~~~~g~~~~a~~~~~ 426 (571)
.. ..++.|...+ .++|++++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 22 3334676665 677777764
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.47 E-value=1.9 Score=43.27 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC-CCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCcc
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 435 (571)
.+-..|...+.+.|+.++|++.++.+++..|. +.......|+.++...+.+.++..++.+--+...++
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 33345666677788888888888888776654 222266778888888888888888777654433433
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.74 Score=42.37 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHhcCCHhH
Q 008280 312 AGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ-PAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 385 (571)
.|++..|.+-|...++.|.-.+ .+..+--|.+.+...|++++|..+|..+ |..|. +....-|.......|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555554321100 1223334555555555555555555444 21122 2344445555556666666
Q ss_pred HHHHHHHHhccCCCCC
Q 008280 386 AEFAAMNLFNLNPANA 401 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~ 401 (571)
|...++++.+.-|+.+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 6666666666666544
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.39 E-value=0.38 Score=44.12 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=80.1
Q ss_pred HHHHHHHhhC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 008280 251 DACKLFLEIQ--RKDVVTWNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG---------- 313 (571)
Q Consensus 251 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 313 (571)
-.++.|.... ++|-.+|.+++..+... ++.+=....++.|.+.|+.-|..+|..|++.+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677766 67888999999888764 566777778899999999999999999998875543
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 008280 314 ------LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352 (571)
Q Consensus 314 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 352 (571)
+-+=+..++++|.. +|+.||.++-..|+.++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 22346788999965 599999999999999999888643
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.22 E-value=9.1 Score=42.71 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.1
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHH
Q 008280 167 NAMIAGYVENS--WAEDGLKLLRMMIG 191 (571)
Q Consensus 167 ~~li~~~~~~g--~~~~A~~~~~~m~~ 191 (571)
-.+|.+|++.+ ..++|+....+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34556666665 45556555555543
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.16 E-value=6.3 Score=38.74 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------CHHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008280 137 AMISGYMKFGKVDLAEKLFDEMPTK-------NLVTWNAMIAGYVE---NSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 206 (571)
Q Consensus 137 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 206 (571)
.++-.|-...+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777642 11122233445555 6788888888877555555667777766655
Q ss_pred HH
Q 008280 207 GC 208 (571)
Q Consensus 207 ~~ 208 (571)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 259
>PRK09687 putative lyase; Provisional
Probab=93.95 E-value=5.9 Score=37.64 Aligned_cols=79 Identities=11% Similarity=0.014 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCHhHHHHH
Q 008280 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWA----EDGLKLLRMMIGLGIRPNASSLSSV 204 (571)
Q Consensus 129 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~t~~~l 204 (571)
.+|..+....+..+...|..+-...+..-+..+|...=...+.++.+.|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444444444444444322222222222233444333444444444442 2344444444222 3344444344
Q ss_pred HHHHh
Q 008280 205 LLGCS 209 (571)
Q Consensus 205 l~~~~ 209 (571)
+.+++
T Consensus 112 ~~aLG 116 (280)
T PRK09687 112 INATG 116 (280)
T ss_pred HHHHh
Confidence 44443
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.76 E-value=9.4 Score=39.34 Aligned_cols=330 Identities=13% Similarity=0.051 Sum_probs=181.9
Q ss_pred hCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC------CChhhHHHHHHHHHcCCCHHH
Q 008280 18 KQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI------KDTASWNTMISGFVQKKNMAK 88 (571)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~ 88 (571)
+.| ..+.+.++|++..+ ..+..|...+..+....|+.+.-+.+|+.... .....|...|..-..++++..
T Consensus 91 klg-~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLG-NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred Hhh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 456 78888888887654 45567777777666555888888888877643 345567777777777888888
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHH---c------CChHHHHHHH-----------------------hhCCCCCh---h
Q 008280 89 ARDLFLAMPEKNSVSWSAMISGYIE---C------GQLDKAVELF-----------------------KVAPVKSV---V 133 (571)
Q Consensus 89 A~~~~~~m~~~d~~~~~~li~~~~~---~------g~~~~A~~~~-----------------------~~~~~~~~---~ 133 (571)
...++++..+--...++..-.-|.+ . ...+++.++- +..-.+.. .
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 8888887755222222222211111 0 1111111111 00001110 1
Q ss_pred HHHHHH-------HHHHhcCCHHHHHHHHhhCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 008280 134 AWTAMI-------SGYMKFGKVDLAEKLFDEMPT-----------KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195 (571)
Q Consensus 134 ~~~~li-------~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 195 (571)
..+.+- .+|-..-...+.+-.|+.-.. .+..+|+.-+.--...|+.+.+.-+|++..-.- .
T Consensus 250 ~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A 328 (577)
T KOG1258|consen 250 EKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-A 328 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-h
Confidence 111111 223333334444445554332 245689999999999999999999998876321 1
Q ss_pred CCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC--Chh-hHHHHHH
Q 008280 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--DVV-TWNAMIS 272 (571)
Q Consensus 196 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~ 272 (571)
.=...|-..+.-....|+.+.+..++....+.-.+..+.+.-.-....-..|+.+.|..+++.+.+. +.+ .-..-+.
T Consensus 329 ~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~ 408 (577)
T KOG1258|consen 329 LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKIN 408 (577)
T ss_pred hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHh
Confidence 1112233333333344888888888877776654433333222222223368999999999988752 221 1111233
Q ss_pred HHHHcCChHHHH---HHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH
Q 008280 273 GYAQHGKGEKAL---RLFDKMKDEGMKPDSI--TFVALLL-ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346 (571)
Q Consensus 273 ~~~~~g~~~~A~---~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 346 (571)
...+.|..+.+. .++.........+... .+..... .+.-.++.+.|..++..+.. ..+++...|..+++...
T Consensus 409 ~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 409 WERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHH
Confidence 345567666666 3333322211111111 1111111 23345788899999999876 56777888888888776
Q ss_pred HcCCH
Q 008280 347 RAGKL 351 (571)
Q Consensus 347 ~~g~~ 351 (571)
-.+..
T Consensus 487 ~~~~~ 491 (577)
T KOG1258|consen 487 IQPSG 491 (577)
T ss_pred hCCcc
Confidence 66533
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.60 E-value=0.82 Score=43.56 Aligned_cols=121 Identities=16% Similarity=0.098 Sum_probs=55.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCC--CC--ChHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHh-----
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGI--AA--KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPA----- 368 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~----- 368 (571)
+..+....+.++++.+.|+...+--.- .| ...++..|...|.+..++++|.-+..+. +.+.-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 344455555566666666554431111 11 1234555666666666666554443332 2111011
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhcc--CCC----CCchhHHHHHHHHhhccChhHHHHHHH
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNL--NPA----NAAGCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
+..-|.-+++..|....|.+.-+++.++ ... ... ....++++|...|+.|.|..-|+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar-c~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR-CLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHhcccHhHHHHHHH
Confidence 1222334555666666666655555332 111 111 23356666666666666555544
No 262
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.59 E-value=13 Score=40.30 Aligned_cols=407 Identities=13% Similarity=0.106 Sum_probs=219.2
Q ss_pred HHHHHHHHH--hCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CChhhHHHHHHHHH
Q 008280 9 WNSVLAGFA--KQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISGFV 81 (571)
Q Consensus 9 ~~~l~~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~ 81 (571)
|...+.++. +.| +.++|..+++.... .|..|...+-..|-.. |..++|..+|++... |+......+..+|+
T Consensus 44 ~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQKYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 455556554 567 99999988887643 5667788888888888 999999999999876 44455556677888
Q ss_pred cCCCHH----HHHHHHhhCCCCCcchHHHHHHHHHHc-CChH---------HHHHHHhhCCCCC-h----hHHHHHHHHH
Q 008280 82 QKKNMA----KARDLFLAMPEKNSVSWSAMISGYIEC-GQLD---------KAVELFKVAPVKS-V----VAWTAMISGY 142 (571)
Q Consensus 82 ~~g~~~----~A~~~~~~m~~~d~~~~~~li~~~~~~-g~~~---------~A~~~~~~~~~~~-~----~~~~~li~~~ 142 (571)
+-+++. .|+++++..++ +...+-++++.+.+. ...+ -|.+.++.+.+.+ . .-..-.....
T Consensus 122 R~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 877765 46666665554 444444555555443 2222 2333344443332 1 1111122344
Q ss_pred HhcCCHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH--------H--
Q 008280 143 MKFGKVDLAEKLFDE-----MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL--------G-- 207 (571)
Q Consensus 143 ~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~--------~-- 207 (571)
...|.+++|..++.. ...-+...-+--+..+...+++.+..++-.++...| +|. |..... .
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~ 276 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNK 276 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhccc
Confidence 567889999998833 233455556667788888899999999888888875 332 222111 1
Q ss_pred ------HhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHH---HhcCCHHHHHHHH-HhhCCC-----C---------
Q 008280 208 ------CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY---CKCGDLEDACKLF-LEIQRK-----D--------- 263 (571)
Q Consensus 208 ------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~~-~~~~~~-----~--------- 263 (571)
....+.++...+..+..+... ....|-+-+.++ ..-|+.+++...| ++.-.+ |
T Consensus 277 ~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~ 353 (932)
T KOG2053|consen 277 EPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLN 353 (932)
T ss_pred ccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCC
Confidence 111222333333333332221 112222223333 3447777654433 222110 1
Q ss_pred ----------------hhh--------HHHHHHHHHHcC-----ChHHHHHHHHHHH---HcC------CCCCHH-----
Q 008280 264 ----------------VVT--------WNAMISGYAQHG-----KGEKALRLFDKMK---DEG------MKPDSI----- 300 (571)
Q Consensus 264 ----------------~~~--------~~~li~~~~~~g-----~~~~A~~~~~~m~---~~g------~~p~~~----- 300 (571)
..+ +...+..-...| ..+....++++.. +.| .-|+..
T Consensus 354 ~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~ 433 (932)
T KOG2053|consen 354 IDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDE 433 (932)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHH
Confidence 111 111111111222 2233344443332 223 223332
Q ss_pred ----HHHHHHHHHHhcCcHH---HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCC---CCCHhHH
Q 008280 301 ----TFVALLLACNHAGLVD---LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQPAIF 370 (571)
Q Consensus 301 ----t~~~ll~a~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~ 370 (571)
+.+.++..|.+.++.. +|+-+++.... .-+.+..+--.++..|.-.|-+..|.++|+.+.+ +.|..-+
T Consensus 434 ~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 434 LLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH
Confidence 2345666777777655 44444544443 2233344455678888888999999999988843 3333322
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChh---HHHHHHHHHH
Q 008280 371 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD---DVARIRLSMK 429 (571)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~ 429 (571)
. +...+...|++..+...+...+...-++-..+-...+.+| +.|.+. +-....++|.
T Consensus 512 ~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~ 571 (932)
T KOG2053|consen 512 L-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLM 571 (932)
T ss_pred H-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHH
Confidence 2 2344567788888888888776643332221333344444 334444 4444445553
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.55 E-value=0.64 Score=42.72 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHhhCC--CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc------------
Q 008280 151 AEKLFDEMP--TKNLVTWNAMIAGYVEN-----SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL------------ 211 (571)
Q Consensus 151 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~------------ 211 (571)
.++.|.... ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..||+.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 56777777777776553 45555666778888888888888888888875442
Q ss_pred ----CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 008280 212 ----SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 248 (571)
Q Consensus 212 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 248 (571)
.+-+-+..++++|...|+-||..+-..|++++.+.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1234466777777777877877777777777776654
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.46 E-value=6.1 Score=36.24 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHhhCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c-
Q 008280 243 YCKCGDLEDACKLFLEIQRKD------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH---A- 312 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~- 312 (571)
-.+.|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++....-.......|..-|.+.+. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 345788888888888776432 233445566677788888888888887664322222333333333331 1
Q ss_pred ---CcH---HHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh--HHHHHHHHHHhcCCHh
Q 008280 313 ---GLV---DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA--IFGTLLSACRVHKRLD 384 (571)
Q Consensus 313 ---g~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 384 (571)
.+. .+|..-|+.++.++ |+.. -...|..-+..+ .|.. -=..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKL---NDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcChH
Confidence 122 23344444444432 2211 001111111110 0110 1123556688999999
Q ss_pred HHHHHHHHHhccCCCCCc--hhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 385 LAEFAAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 385 ~a~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.|..-++++++.-|+.+. ..+..+..+|.+.|..++|.+.-+-+..
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999999887665432 2566778889999999999887665544
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.45 E-value=9.6 Score=38.47 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=29.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSM 325 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 325 (571)
+..+.-+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444445566666666666665432111 1123445556666666666666655554
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.37 E-value=4.1 Score=33.96 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 344 (571)
..-..++..+...+.......+++.+...+ ..+....+.++..|++.+ .......+.. .++.......+..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 334556777777778888888888887765 345566777777777653 3334444442 1222333456777
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH-KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
+.+.+.++++.-++.+++. |...+..+..+ ++++.|.+++.+. +++. .|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~-lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ-----NNPE-LWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC-----CCHH-HHHHHHHHHH
Confidence 7788888888888888763 22223333344 7888888877762 2444 6766666554
No 267
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.23 E-value=14 Score=39.74 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH
Q 008280 278 GKGEKALRLFDKMKDEG-MKPDSI--TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
.+.+.|..++....... ..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 45566777777653322 222221 2222222222222134555555543321 12333344444444577777777
Q ss_pred HHHHHhCCC--CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 008280 355 VDLIKKMPF--KPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394 (571)
Q Consensus 355 ~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (571)
...+..|+. +-...-..=+..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777731 1111111224455555677777777777763
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=2.5 Score=40.07 Aligned_cols=147 Identities=13% Similarity=-0.003 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH----HHHHcCCHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD----LLGRAGKLVE 353 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~ 353 (571)
|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... ..++...|..+=. .+..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444432 2334444444444555555555555555544431 2333333322222 2234555555
Q ss_pred HHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC---CchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 354 AVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 354 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
|++.-++. .+. .|.-.-.++...+...|+..++.++..+-...-... ..+.|-..+-.+...+.++.|.++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555444 211 222333444444445555555554444332110000 001233444444444555555555543
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.16 E-value=0.73 Score=37.07 Aligned_cols=88 Identities=18% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcCC
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ--PAIFGTLLSACRVHKR 382 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~ 382 (571)
.+..|+++.|++.|.+.+. -.+.....||.-..+|.-+|+.++|++-+++. +-+.. -..|..-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445555555555555443 22333455555555555555555555544443 11100 1123333334566666
Q ss_pred HhHHHHHHHHHhccCC
Q 008280 383 LDLAEFAAMNLFNLNP 398 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p 398 (571)
.+.|..-|+.+-+++.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666666666655443
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.91 E-value=7.1 Score=40.28 Aligned_cols=159 Identities=15% Similarity=0.140 Sum_probs=88.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHH----hcCCHHHHHHHHHhhCC--CChhhHH
Q 008280 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT------ALTPLISMYC----KCGDLEDACKLFLEIQR--KDVVTWN 268 (571)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~y~----~~g~~~~A~~~~~~~~~--~~~~~~~ 268 (571)
+..+++..+-.||-+.|.+.+....+.+--..+. .|...+..+. ...+.+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455555555666666666666655532111111 1222222222 24466777777777765 5555554
Q ss_pred HH-HHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHH-H
Q 008280 269 AM-ISGYAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV-D 343 (571)
Q Consensus 269 ~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~ 343 (571)
-. ...+...|+.++|++.|++..... .......+--+.-.+.-..++++|.+.|..+.+.. ..+...|..+. -
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHH
Confidence 33 334556777888888877654211 11223344555666777778888888888877642 23333443332 3
Q ss_pred HHHHcCCH-------HHHHHHHHhC
Q 008280 344 LLGRAGKL-------VEAVDLIKKM 361 (571)
Q Consensus 344 ~~~~~g~~-------~~A~~~~~~~ 361 (571)
.+...|+. ++|.++|.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 34556666 7888888777
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.88 E-value=10 Score=37.30 Aligned_cols=149 Identities=12% Similarity=-0.007 Sum_probs=79.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHh-cCCCCChHh
Q 008280 262 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---DSITFVALLLACNHAGLVDLGIQYFDSMVND-YGIAAKPDH 337 (571)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 337 (571)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888888888888888888877643211 2223333445566678888888888777652 111111111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHhHHHHHHHHHHhc------CCHhHHHHHHHHHhccCCCCCchhHHHHHH
Q 008280 338 YTCMVDLLGRAGKLVEAVDL-IKKMPFKPQPAIFGTLLSACRVH------KRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~ 410 (571)
...+...+.. ..+..... ........-...+..+..-+... +..+++...|.++.++.|+... .|..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k-~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK-AWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH-HHHHHHH
Confidence 1111111000 00000000 00000000012333333333333 7888999999999999998876 7777777
Q ss_pred HHh
Q 008280 411 IYA 413 (571)
Q Consensus 411 ~~~ 413 (571)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 664
No 272
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.81 E-value=0.36 Score=41.91 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=67.7
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCC---CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 344 LLGRAGKLVEAVDLIKKM----PFKP---QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
-+.+.|++++|..-|... |-.+ ....|..-..++.+.+..+.|+.-..++++++|.... +...-+.+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHHhhh
Confidence 355667777777766655 2111 1344555556778899999999999999999998876 7778888999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 008280 417 KWDDVARIRLSMKENNV 433 (571)
Q Consensus 417 ~~~~a~~~~~~m~~~~~ 433 (571)
++++|++-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999887543
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=1.4 Score=41.65 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=90.8
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHH----HHHHHHHHhcCCHh
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIF----GTLLSACRVHKRLD 384 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~----~~l~~~~~~~g~~~ 384 (571)
..|...+|...++++.++ .+.|...+.-.=+++.-.|+.+.-...++++ |. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777888888999874 5777777777788899999999988888887 32 4554333 23334457899999
Q ss_pred HHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 385 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 385 ~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
+|++..++.++++|.+.- +...++.++.-.|+..++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~W-a~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCW-ASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchH-HHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999977 7778888888999999998876543
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.18 E-value=6.9 Score=34.81 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|++..|.+-+...-+.-.-.|-...|-.+++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34566666666677777777777777665432222 22222222333456666665554443332112222223332222
Q ss_pred HHHHcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC-------CchhHHHHHHHHhhc
Q 008280 344 LLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN-------AAGCYVQLANIYAAM 415 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~~l~~~~~~~ 415 (571)
+.=++.+|..-+ ++. ...|..-|+..+-.+.--.-.++ .+++++.+-..++ +. +|.-|+.-|-..
T Consensus 178 ---~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTE-tyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTE-TYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHH-HHHHHHHHHhcc
Confidence 223455554433 332 12455556555544332211111 1222222211111 23 888999999999
Q ss_pred cChhHHHHHHHHHHhCCC
Q 008280 416 KKWDDVARIRLSMKENNV 433 (571)
Q Consensus 416 g~~~~a~~~~~~m~~~~~ 433 (571)
|+.++|..+|+..+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999998877655
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.06 E-value=0.27 Score=29.83 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888999999999988888743
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.02 E-value=0.24 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
+|..+...|...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666666666666666666666663
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.93 E-value=12 Score=41.79 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCH
Q 008280 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNL 163 (571)
Q Consensus 84 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 163 (571)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++.--.+.....|.+..+-+.....+++|.-.|+..-+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 45555555554443 233444445555566666666665444333344555555555556666666666555432
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS--LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 241 (571)
..--+.+|..+|+|.+|+.+-.+|.. ..|... --.|..-+...++.-+|-++..+.... ..-.+.
T Consensus 968 --lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ 1034 (1265)
T KOG1920|consen 968 --LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVA 1034 (1265)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHH
Confidence 12234556667777777777665532 112221 134445555555555555554443321 122444
Q ss_pred HHHhcCCHHHHHHHHHhhC
Q 008280 242 MYCKCGDLEDACKLFLEIQ 260 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~ 260 (571)
.|++...+++|.++-..-.
T Consensus 1035 ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHhhHhHHHHHHHHHHhcc
Confidence 5555666666666555443
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.70 E-value=4.9 Score=38.56 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCC---HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCC-----CCcch
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIG-LGIRPN---ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-----KDTTA 235 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~ 235 (571)
+|-.+..++-+..++.+++.+-+.-.. .|..|. .....++-.+....+.++++.+.|+.+.+.... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 555566666666666666665544333 222221 122344556667777788888877776653211 23467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhC-------CCChh------hHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCC
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQ-------RKDVV------TWNAMISGYAQHGKGEKALRLFDKMK----DEGMKPD 298 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 298 (571)
+.+|...|.+..|+++|.-+..+.. -.|.. +...|..++-..|...+|.+.-++.. ..|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 8888888888888888765544332 12322 22234455666777767766666542 2332221
Q ss_pred H-HHHHHHHHHHHhcCcHHHHHHHHHHh
Q 008280 299 S-ITFVALLLACNHAGLVDLGIQYFDSM 325 (571)
Q Consensus 299 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 325 (571)
. .....+...|...|+.+.|+.-|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1 13344556677777777776666544
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.48 E-value=12 Score=36.77 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC----CCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP----ANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
....+|..++..++++|+++.|...+.++...++ ..+. ....-+......|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~-v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPR-VFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcc-hHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999987552 1344 7777889999999999999999888763
No 280
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.44 E-value=2.7 Score=34.19 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=60.5
Q ss_pred CCHhHHHHHHHHHHhcC---CHhHHHHHHHHHhc-cCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCcee
Q 008280 365 PQPAIFGTLLSACRVHK---RLDLAEFAAMNLFN-LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 440 (571)
++..+--.+..++.+.. +..+++.+++.+++ -.|........-|+-++.+.|+++.+.++.+...+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e-------- 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE-------- 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--------
Confidence 44444455555555443 46677888888886 5565544355677888889999999999888776522
Q ss_pred EEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcc
Q 008280 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481 (571)
Q Consensus 441 ~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~ 481 (571)
|++.++...=+.+.++|.+.|++
T Consensus 102 ------------------~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 102 ------------------PNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ------------------CCcHHHHHHHHHHHHHHhhccee
Confidence 34455555555677888888764
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=11 Score=34.09 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=32.1
Q ss_pred HHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHhHHHHHH---HHHHhcCCHhHHHHHHHHHhccCCCC
Q 008280 340 CMVDLLGRA-GKLVEAVDLIKKM-----PFKPQPAIFGTLL---SACRVHKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 340 ~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~~ 400 (571)
.+.+.|-.- .++++|+..|+.. +.+.+...-..++ .--...+++.+|+.+|+++....-++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444433 4556666666555 1112222222222 22356788889999998886654444
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.24 E-value=8.4 Score=32.68 Aligned_cols=91 Identities=14% Similarity=0.034 Sum_probs=51.1
Q ss_pred HHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhCCC-CCCHhHHHHHHHHHHhcCCHh
Q 008280 307 LACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKMPF-KPQPAIFGTLLSACRVHKRLD 384 (571)
Q Consensus 307 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 384 (571)
..-...++.+.+..++..+.- +.|. +..-..-...+.+.|++.+|..+|+++.. .|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 344556677777777776653 4454 23333344556777888888888887732 233344455665555444333
Q ss_pred HHHHHHHHHhccCCCC
Q 008280 385 LAEFAAMNLFNLNPAN 400 (571)
Q Consensus 385 ~a~~~~~~~~~~~p~~ 400 (571)
.=.....++++.+|+.
T Consensus 95 ~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 95 SWRRYADEVLESGADP 110 (160)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 3344455555555543
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.23 E-value=0.3 Score=29.62 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+|..|...|...|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777888888888888888888554
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=25 Score=37.89 Aligned_cols=53 Identities=6% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 008280 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 394 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (571)
++..+....+.+.+..+.+..+- -++..|..++.-+.+.+..+.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 34445555666666666666652 366677777777777766555554444443
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.05 E-value=14 Score=35.03 Aligned_cols=17 Identities=18% Similarity=-0.318 Sum_probs=11.7
Q ss_pred HHhcCCHhHHHHHHHHH
Q 008280 377 CRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~ 393 (571)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45677777777777644
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.05 E-value=1.5 Score=41.00 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 008280 133 VAWTAMISGYMKFGKVDLAEKLFDEMPTK---NLVTWNAMIAGYVENSWAEDGLKLLRMMIG-----LGIRPNASSLSSV 204 (571)
Q Consensus 133 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~l 204 (571)
.++..++..+..+|+++.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888999999999999999988753 557899999999999999999999998865 4777776655444
Q ss_pred HHH
Q 008280 205 LLG 207 (571)
Q Consensus 205 l~~ 207 (571)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=1.3 Score=37.40 Aligned_cols=51 Identities=22% Similarity=0.117 Sum_probs=26.2
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
..++.+.++.++..+.-+.|+.+. .-..-+..+...|+|.+|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPE-LDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555544 444445555555555555555555443
No 288
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.59 E-value=35 Score=38.68 Aligned_cols=257 Identities=11% Similarity=0.007 Sum_probs=122.4
Q ss_pred HhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCCCCHHHHHHHHH
Q 008280 93 FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKV-DLAEKLFDEMPTKNLVTWNAMIA 171 (571)
Q Consensus 93 ~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~ 171 (571)
...+..+|+.+-...+..+.+.+..+....+...+.+++..+....+.++.+.+.. .....+...+..+|...-...+.
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~ 706 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALD 706 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHH
Confidence 33334555555555556665555433333333444455555555554444443221 11111222222344444334444
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 008280 172 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 251 (571)
Q Consensus 172 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 251 (571)
++...+..+ .. .+-++.+ .+|...-...+.++...+..+. +. ... -.++..+-...+.++...+..+.
T Consensus 707 aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~-~~l---~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 707 VLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VA-GAA---TDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HH-HHh---cCCCHHHHHHHHHHHHHhccccc
Confidence 444332211 11 2222222 3444444455555555444322 11 111 14455566666666666654432
Q ss_pred -HHHHH-HhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc
Q 008280 252 -ACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329 (571)
Q Consensus 252 -A~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 329 (571)
+...+ .-+.++|...-.+.+.++...|....+...+..+.. .++...-...+.++...+. +++...+..+.+
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 22333 333456766677777777777766555444444443 3455555556666666665 345555555543
Q ss_pred CCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhH
Q 008280 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 369 (571)
Q Consensus 330 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 369 (571)
.|+..+-...+.++++.+....+...+...-..+|..+
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 46666666777777775333445555544422344443
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.57 E-value=7.3 Score=34.08 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHh
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI--TFVALLLACNHAGLVDLGIQYFDSM 325 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~ 325 (571)
.+..+...|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34445555555555555555555555443333332 2344455555555555555554444
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.54 E-value=1.7 Score=36.17 Aligned_cols=54 Identities=17% Similarity=-0.009 Sum_probs=38.7
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
..++.++++.++..+.-+.|+.+. .-..-+..+...|+|++|.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e-~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKE-LDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccc-cchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 467777777777777777777766 666677777777777777777777766543
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.52 E-value=14 Score=34.13 Aligned_cols=229 Identities=15% Similarity=0.234 Sum_probs=133.7
Q ss_pred CCHHHHHHHHhhCCC----C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH---CCCC--CCHhHHHHHHHHHhccCc
Q 008280 146 GKVDLAEKLFDEMPT----K---NLVTWNAMIAGYVENSWAEDGLKLLRMMIG---LGIR--PNASSLSSVLLGCSHLSS 213 (571)
Q Consensus 146 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--pd~~t~~~ll~~~~~~~~ 213 (571)
...++|+.-|+++.+ + .--+.-.+|..+.+.|++++.++.|.+|.. ..+. -+..+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456667766666542 1 223455678888888888888888887753 1122 234566777776666666
Q ss_pred hHHHHHHHHHHHhC-----CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC--------C-------hhhHHHHHHH
Q 008280 214 LQLGKQVHQLVFKS-----PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--------D-------VVTWNAMISG 273 (571)
Q Consensus 214 ~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~ 273 (571)
.+.-..+++.-++. +-..--.+-+-|...|...|.+..-.+++.++.+. | ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666666543321 11111223355778888888888888888877531 1 3467777888
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----hcCcHHHHHHHHHHhHHhcCCCCChH-----hHHHHH
Q 008280 274 YAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACN-----HAGLVDLGIQYFDSMVNDYGIAAKPD-----HYTCMV 342 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li 342 (571)
|....+-.+...++++...-. ..|.+.. ..+++-|. +.|.+++|-.-|-+..+.|.-.-++. -|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888777777888764322 2344433 34556554 56778877655544444433222221 255566
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCC--CCHhHHHHHHHHHHhc
Q 008280 343 DLLGRAGKLVEAVDLIKKM---PFK--PQPAIFGTLLSACRVH 380 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~---~~~--p~~~~~~~l~~~~~~~ 380 (571)
.++.+.|- .=|+.- |.+ |.......|+.+|..+
T Consensus 280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 77766651 111111 333 4445667788887544
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.50 E-value=5.6 Score=34.03 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=53.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChH-hHHHH--HHHHHHcCC
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD-HYTCM--VDLLGRAGK 350 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~ 350 (571)
++.+..++|+.-|..+.+.|...-++ ............|+...|...|.++-.+ .-.|.+. -...| .-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 44455555555555555544321111 1111222334555555556666555443 1112211 11111 112344566
Q ss_pred HHHHHHHHHhCCCCCC---HhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 351 LVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 351 ~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+++...-.+.+....+ ...-.+|.-+-.+.|++..|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6665555555522212 12233444445566666666666666654
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.39 E-value=14 Score=33.90 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGM--KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 336 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 336 (571)
.|-.-+..-.+.|++++|.+.|+.+....+ +-...+...++.++-+.+++++|....++..+.++-.|+..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 344445556778999999999999876421 11345677777888889999999999998888776666654
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.89 E-value=8.2 Score=36.94 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--c----CchHHHHHHHHHHHhCC
Q 008280 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSH--L----SSLQLGKQVHQLVFKSP 228 (571)
Q Consensus 180 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g 228 (571)
++.+.+++.|.+.|+.-+..+|.+....... . .....+..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4455678888888888888777664443332 1 13456677777777653
No 295
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.88 E-value=1.2 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGL 192 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 192 (571)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666777777777777777777777764
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.59 E-value=5.2 Score=34.98 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=60.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhhCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH---H
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEIQRKD------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV---A 304 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ 304 (571)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+....-..+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 346678899999999999999999987653 3456778888888899999888887765432121111111 1
Q ss_pred HHH--HHHhcCcHHHHHHHHHHhH
Q 008280 305 LLL--ACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 305 ll~--a~~~~g~~~~a~~~~~~~~ 326 (571)
+.. ++...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2334566666666665544
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.33 E-value=11 Score=30.82 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCC
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 331 (571)
.....+......|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++.+..++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566777888888888888877653 3667777778888888888888888888877764 54
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=4.6 Score=41.43 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 008280 83 KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 162 (571)
.|+++.|..++-.++++ .-+.++.-+...|..++|+++- +|+.- -.....+.|+++.|.++..+. .+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~--~s 665 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEA--NS 665 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhh--cc
Confidence 46777777666665533 2344555666677777776542 12211 123344678888888776553 45
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 242 (571)
..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. .|.-..+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHH
Confidence 67788888888888888888888876553 44566666677777666666666665552 2223345
Q ss_pred HHhcCCHHHHHHHHHhh
Q 008280 243 YCKCGDLEDACKLFLEI 259 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~ 259 (571)
|...|+++++.+++..-
T Consensus 731 ~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIST 747 (794)
T ss_pred HHHcCCHHHHHHHHHhc
Confidence 56677777777776543
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.17 E-value=6.3 Score=37.72 Aligned_cols=127 Identities=13% Similarity=0.203 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--cC----CHHHHHHHHHhhCCC-------ChhhHHHHHHHHHHcCC-
Q 008280 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--CG----DLEDACKLFLEIQRK-------DVVTWNAMISGYAQHGK- 279 (571)
Q Consensus 214 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~- 279 (571)
++....+++.+.+.|+..+..++-+....... .. ....|..+|+.|++. +-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999888777664444433 22 356788999999852 34455555544 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCc--HHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 280 ---GEKALRLFDKMKDEGMKPDSI--TFVALLLACNHAGL--VDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 280 ---~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
.+.+...|+.+.+.|...+.. ....++..+..... +.++.++++.+.+. ++++...+|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 356777888888878665443 33334433333222 44778888888776 88888888776543
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.96 E-value=5.8 Score=33.92 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHhhCCC-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008280 245 KCGDLEDACKLFLEIQRK-D---VVTWNAMISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
..|.+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555444444321 1 12233344444455666666666655544
No 301
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.73 E-value=48 Score=37.61 Aligned_cols=267 Identities=11% Similarity=-0.010 Sum_probs=151.1
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCCh-HHHHHHHhhCCCCChhHHHHH
Q 008280 60 DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL-DKAVELFKVAPVKSVVAWTAM 138 (571)
Q Consensus 60 ~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~l 138 (571)
.+...+..+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+.. .....+...+..+|+.+..+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4445556778888777788887777654333344444455555544555555544321 112222233445666776677
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHH-H
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-G 217 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-a 217 (571)
+..+...+.- ....+...+..+|...=...+.++.+.+..+.. ..... .++...-.....++...+..+. +
T Consensus 705 ~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 705 LDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAAT---DENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHhc---CCCHHHHHHHHHHHHHhccccchh
Confidence 7766654321 123445555667776656666666665544322 22222 4555555666666666665432 2
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008280 218 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296 (571)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. .++...+..+.. .
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D 849 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---D 849 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---C
Confidence 333444443 456777888888888888765553 34445555666555666777777765 456666666654 4
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH
Q 008280 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345 (571)
Q Consensus 297 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 345 (571)
|+...-...+.++.+......+...+....+ .++..+-.....++
T Consensus 850 ~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~aL 894 (897)
T PRK13800 850 PHLDVRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARRAL 894 (897)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 6666666677777775434456666666654 34554444444443
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.46 E-value=9.6 Score=29.24 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=44.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 202 (571)
+..+...|++++|..+.+.+..||...|-+|-.. +.|..+.+..-+.+|...| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456678999999999999888999998877543 6677777777777777766 45444443
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.23 E-value=3.1 Score=27.89 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=38.0
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCc
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 480 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~ 480 (571)
....++.++.+.|++++|.+..+.+.+. .|...++...-..+.++|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999988762 35566666666677788887773
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.19 E-value=2.2 Score=40.04 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.++..++..+...|+++.+...+++++..+|-+.. .|..|..+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~-~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEP-AYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566777778888888888899999999988877 889999999999999999998888765
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.82 E-value=18 Score=31.73 Aligned_cols=128 Identities=12% Similarity=0.036 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhH-----H
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV--ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----T 339 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 339 (571)
|..++.... .+.+ +.....+++...+.+....++. .+...+...+++++|...++..... |..+.+ -
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHH
Confidence 333444332 3444 5556666666543222222333 2345678889999999988876532 222333 3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKMPFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
.|.......|.+++|+..++... .++ ......-...+...|+-++|...|++.++.+++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 45567788899999999998763 122 22233344568899999999999999998876543
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=49 Score=35.86 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 008280 135 WTAMISGYMKFGKVDLAEKLFDEMPTKNLV----TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210 (571)
Q Consensus 135 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 210 (571)
...-+++..+...++.|..+-+.-.. |.. ......+-+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 34456677777777777777655432 222 2233344456788888888887765532 2332 23444445
Q ss_pred cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChh--hHHHHHHHHHHcCChHHHHHHHH
Q 008280 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV--TWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 211 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55556666677777777754 34445668889999999888888877665 2221 23445566666666666666555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 008280 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325 (571)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 325 (571)
+... +......+ +...+++++|.+++..+
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4322 22222222 45667888888887755
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.63 E-value=11 Score=29.01 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008280 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 293 (571)
Q Consensus 214 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 293 (571)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555444311 11122222345667899999999999998999999988765 4667777777778888777
Q ss_pred CCCCCHHHHHH
Q 008280 294 GMKPDSITFVA 304 (571)
Q Consensus 294 g~~p~~~t~~~ 304 (571)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.46 E-value=14 Score=37.07 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=65.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHhHHHHH
Q 008280 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLDLAEFA 389 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~ 389 (571)
.|++-.|-+-+....+.+ +.++.+...........|+++.+...+.... +.....+...+++.....|+.++|...
T Consensus 302 ~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 445444433333333322 2233333333334455666666666665541 122334555666666666666666666
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEe
Q 008280 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 452 (571)
Q Consensus 390 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~ 452 (571)
.+-|+.-+.+++. ....-+..-...|-++++.-.++++...+.+ ....|+..-....+|-
T Consensus 380 a~~~l~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~~ 439 (831)
T PRK15180 380 AEMMLSNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYFN 439 (831)
T ss_pred HHHHhccccCChh-heeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceecc
Confidence 6666665544443 3333333334456666666666665543322 2223544433334443
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.43 E-value=1.4 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHh
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLF 394 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (571)
+++.|...|...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444455555554444443
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.12 E-value=5.9 Score=30.15 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 279 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
+.-++.+-++.+....+-|+.....+.+.||.+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3345666677777777889999999999999999999999999998875433 24456666554
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.02 E-value=0.85 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=14.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHH
Q 008280 230 CKDTTALTPLISMYCKCGDLEDAC 253 (571)
Q Consensus 230 ~~~~~~~~~li~~y~~~g~~~~A~ 253 (571)
|.+..+|+.|..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555666666666666666554
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.99 E-value=6.1 Score=30.44 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
+..+-+..+....+-|+.....+.+.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5555666666677889999999999999999999999999998877544 33336766654
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.97 E-value=1.4 Score=41.60 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=78.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcC
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHK 381 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 381 (571)
-.+-|.++|.+++|...|...+. ..| ++.++..-..+|.+..++..|+.-.+.. ... .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35668889999999999987764 455 7888888899999999998887665544 110 11234555555556678
Q ss_pred CHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHH
Q 008280 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424 (571)
Q Consensus 382 ~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~ 424 (571)
+..+|.+-++.+++++|++.. |-..|.+.....++.-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E-----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE-----LKKSLARINSLRERKIA 217 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH-----HHHHHHHhcchHhhhHH
Confidence 899999999999999998653 44444444444444433
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.25 E-value=2 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666655
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.88 E-value=1.4 Score=25.67 Aligned_cols=26 Identities=15% Similarity=-0.077 Sum_probs=13.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
..++...|+.++|...|+++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444455555555555555555443
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.38 E-value=1.9 Score=24.18 Aligned_cols=29 Identities=21% Similarity=0.016 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhccCC
Q 008280 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 398 (571)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444455555555555555555555544
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.20 E-value=2 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.+..++.+|...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 688999999999999999999998765
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.17 E-value=18 Score=37.39 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 008280 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL 185 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 185 (571)
.|+++.|..++..+++ ..-+.++..+-..|..++|+++
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~ 636 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL 636 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc
Confidence 4666666666555552 2233455555566666666554
No 319
>PRK10941 hypothetical protein; Provisional
Probab=83.98 E-value=7.3 Score=36.59 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
..+.|-.+|.+.++++.|..+.+.++.+.|+++. -+---+.+|.+.|.+..|..=++.-.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY-EIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 4566667889999999999999999999999987 77788999999999999999888776543
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.92 E-value=32 Score=30.86 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHH-HHHHHHH--HHHHcCChhHHHHHHHHHHH
Q 008280 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLV-TWNAMIA--GYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~ 191 (571)
+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-|.+.-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 455565555556666666666666665553332 1221111 12224556666555544444
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.74 E-value=1.9 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.7
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
++..|+.+|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 788999999999999999999988764
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.70 E-value=14 Score=34.87 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC-C--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008280 227 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-K--------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297 (571)
Q Consensus 227 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 297 (571)
.|.+....+...++..-....+++++...+-++.. + ...+|-.++ ..-++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 34555666667777777767788888888777653 2 223333333 2346778998888888899999
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHh
Q 008280 298 DSITFVALLLACNHAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 298 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 328 (571)
|..++..++..+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776653
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.26 E-value=2.5 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+|..++.+|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999999988765
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.25 E-value=37 Score=31.09 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 008280 166 WNAMIAGYVENSWAEDGLKLLRM 188 (571)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~~ 188 (571)
++--...|.++|.++-|-..+.+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 34444455555555544444433
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.15 E-value=63 Score=33.01 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 244 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 244 (571)
..-+++..+.++-.+.-...+-.+|..-| .+...|..++..|... ..++--.+++++++..+ .|+.....|++-|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 34455556666655666666666666543 3455566666666555 44445555555555542 23333444555554
Q ss_pred hcCCHHHHHHHHHhhCCCCh---------hhHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCc
Q 008280 245 KCGDLEDACKLFLEIQRKDV---------VTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGL 314 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 314 (571)
+ ++.+.+..+|.++..+-+ ..|..++..- ..+.+..+.+..+... .|...-.+.+.-+-.-|+...+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4 555555555555432111 1344443311 1234444444444432 2222233334444444555555
Q ss_pred HHHHHHHHHHhHH
Q 008280 315 VDLGIQYFDSMVN 327 (571)
Q Consensus 315 ~~~a~~~~~~~~~ 327 (571)
+++|.+++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555544
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.14 E-value=32 Score=29.62 Aligned_cols=134 Identities=10% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC--CHHHHHHHHHhCC
Q 008280 285 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG--KLVEAVDLIKKMP 362 (571)
Q Consensus 285 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 362 (571)
+.++.+.+.+++|+...+..++..+.+.|.+..-.+++. +++-+|.....+.+-.+.... -..-|++++.+++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344455556667777777777777777776555444432 244444433333332222211 1333444555543
Q ss_pred CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 363 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 363 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
. .+..++..+...|++-+|.++.++....+.-+ -..+..+-.+.++..--..+++-..+++
T Consensus 90 ~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~----~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 T-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVP----ARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred h-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC----HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 23334455556777777777666653332211 1233444444444444444444444443
No 327
>PRK12798 chemotaxis protein; Reviewed
Probab=82.08 E-value=57 Score=32.48 Aligned_cols=179 Identities=16% Similarity=0.219 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHhhCCC----ChhhHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCcHH
Q 008280 246 CGDLEDACKLFLEIQRK----DVVTWNAMISGYAQ-HGKGEKALRLFDKMKDEGMKPDS----ITFVALLLACNHAGLVD 316 (571)
Q Consensus 246 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 316 (571)
.|+.++|.+.+..+... ....+-.|+.+-.. ..++.+|+++|+..+-. .|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 78899999999888643 45567777766544 55899999999987653 3433 34444555678899999
Q ss_pred HHHHHHHHhHHhcCCCCChHhHH-HHHHHHHHc---CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYT-CMVDLLGRA---GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 392 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (571)
++..+-.....+|...|-...+. .++..+.+. -..+.-..++..|.-.--...|..+.+.-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888777766666544433 233333333 34455566667764222346888888999999999999999999
Q ss_pred HhccCCCCCchhHHHHHHHHhh-----ccChhHHHHHHHHH
Q 008280 393 LFNLNPANAAGCYVQLANIYAA-----MKKWDDVARIRLSM 428 (571)
Q Consensus 393 ~~~~~p~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 428 (571)
++.+..... .-...+..|.. ..+.+++.+.+..+
T Consensus 283 A~~L~~~~~--~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPDS--ADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCCC--cchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 988764332 34455555532 23455555555443
No 328
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.00 E-value=33 Score=31.70 Aligned_cols=178 Identities=9% Similarity=0.080 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHhhCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCC--CHHHHHHHHHHHHhcCc
Q 008280 247 GDLEDACKLFLEIQRK-------DVVTWNAMISGYAQHGKGEKALRLFDKMKD---EGMKP--DSITFVALLLACNHAGL 314 (571)
Q Consensus 247 g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p--~~~t~~~ll~a~~~~g~ 314 (571)
.++++|+.-|++..+- ...+...||..+.+.|++++.++.+.+|.. +.+.. +..+.++++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566676666665431 223455677777788888888777777642 22222 34466777766666666
Q ss_pred HHHHHHHHHHhHHhcC----CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--------CC----C--CCHhHHHHHHHH
Q 008280 315 VDLGIQYFDSMVNDYG----IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--------PF----K--PQPAIFGTLLSA 376 (571)
Q Consensus 315 ~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~----~--p~~~~~~~l~~~ 376 (571)
.+.-..+++.-..... -..--.+-.-|...|...|.+.+-.++++++ +. + .-..+|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6555555544332211 1111223345667777777777777777665 10 0 112456666777
Q ss_pred HHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHH-----HHhhccChhHHHHH
Q 008280 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN-----IYAAMKKWDDVARI 424 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~-----~~~~~g~~~~a~~~ 424 (571)
|...++-..-..++++++.....-|.......+. +..+.|+|++|..-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 7777887777788887765432211102333333 34567788876543
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.81 E-value=1.9 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.5
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
++..++.+|.+.|++++|.+.|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57789999999999999999999987643
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.63 E-value=36 Score=29.94 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=61.0
Q ss_pred HHHHHHHcCChHHHHHHHhhCCCC--Ch----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHH--HHHHHHHHHHcCC
Q 008280 107 MISGYIECGQLDKAVELFKVAPVK--SV----VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVT--WNAMIAGYVENSW 178 (571)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~~~~~--~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~ 178 (571)
+...+...|++++|...++..... |. .+-.-|.......|.+|+|..+++....++-.+ ...-.+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 345677788899998888866522 21 223345567778888899988888877664333 3334567888888
Q ss_pred hhHHHHHHHHHHHCC
Q 008280 179 AEDGLKLLRMMIGLG 193 (571)
Q Consensus 179 ~~~A~~~~~~m~~~g 193 (571)
-++|..-|.+.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888887764
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.54 E-value=1.9 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=17.5
Q ss_pred hHHHHHHHHhhccChhHHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
+...|+.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677888888888888877764
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.06 E-value=5.2 Score=38.05 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=59.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC
Q 008280 271 ISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349 (571)
Q Consensus 271 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 349 (571)
..-|.++|++++|+..|..-.. +.| |.+++..-..+|.+...+..|..-....+.- -..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999998776 456 8899999999999999988777665554421 0111223333333333345
Q ss_pred CHHHHHHHHHhC-CCCCC
Q 008280 350 KLVEAVDLIKKM-PFKPQ 366 (571)
Q Consensus 350 ~~~~A~~~~~~~-~~~p~ 366 (571)
...+|.+-++.. ...|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 555555554444 34555
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.83 E-value=9.8 Score=33.62 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCCHHHH
Q 008280 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDA 252 (571)
Q Consensus 180 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 252 (571)
++|++.|-++...+.--+ ......+..+-...+.+++++++-.++.. +-.+|+.++.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666666553333 33333333333456666666666665543 2245566666677777766666665
No 334
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.00 E-value=66 Score=31.89 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=49.0
Q ss_pred CHhHHHHH---HHHHHhcCCHhHHHHHHHHHhccCCC-CCchhHHHHHHHHh-hccChhHHHHHHHHHHh
Q 008280 366 QPAIFGTL---LSACRVHKRLDLAEFAAMNLFNLNPA-NAAGCYVQLANIYA-AMKKWDDVARIRLSMKE 430 (571)
Q Consensus 366 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 430 (571)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||- .-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444444 45678999999999999999999999 776 6666677765 78888888888876654
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.93 E-value=9.2 Score=33.08 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
+++|...|+++...+|++. .|..-+.+. .+|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne--~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE--LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H--HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH--HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 6778888888999999986 676665554 3467778777776654
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.88 E-value=2.5 Score=28.29 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556789999999999999999999999864
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.87 E-value=6.6 Score=39.13 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=71.0
Q ss_pred cCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHH
Q 008280 277 HGKGEKAL-RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355 (571)
Q Consensus 277 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 355 (571)
.|+...|- +++..++...-.|+.+.+.+.+ ..+.|+++.+.+.+..... .+.....+..+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45554443 3444455444456655544443 5677788888777766643 34455666777777777788888887
Q ss_pred HHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 356 DLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 356 ~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
..-+.| + .-.++.+.......-...|-++++...+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777666 1 1123333333333345566777777777777776654
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.84 E-value=18 Score=32.02 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC--CCCChHhHHHHHHHHHHcCCHHHH
Q 008280 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG--IAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
+|.+.|-++...+.--+......|...|. ..+.+++.+++....+-+. -.++++.+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444432222222222222222 3444455554444433211 123344444455544444444444
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.63 E-value=3.9 Score=22.49 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 008280 339 TCMVDLLGRAGKLVEAVDLIK 359 (571)
Q Consensus 339 ~~li~~~~~~g~~~~A~~~~~ 359 (571)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665554
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.89 E-value=5 Score=34.65 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccC----hhHHHHHHHHH
Q 008280 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK----WDDVARIRLSM 428 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 428 (571)
+++|+.-|++++.++|+... ++..++++|...+. ..+|...|++.
T Consensus 51 iedAisK~eeAL~I~P~~hd-Alw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHD-ALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 46677788888999999988 99999999987764 23444555444
No 341
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.02 E-value=91 Score=31.84 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=113.4
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccC------chHHHHHHHHHHHhCC-C-CCCcchHHHHHHHHHhcCCH-HHH
Q 008280 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLS------SLQLGKQVHQLVFKSP-L-CKDTTALTPLISMYCKCGDL-EDA 252 (571)
Q Consensus 182 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~-~~A 252 (571)
...+|++..+. .|....+...|..|...- .+.....+++.....+ . +.....|..+.-++.+.... +-|
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 34555555542 345555555666654322 2333444444444432 2 23344566666666655543 334
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHc-CChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-HHHH--HHHHHHhHH
Q 008280 253 CKLFLEIQRKDVVTWNAMISGYAQH-GKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGL-VDLG--IQYFDSMVN 327 (571)
Q Consensus 253 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a--~~~~~~~~~ 327 (571)
..+-......|...|-.-++..... .+++- -.++|...+..-..+-...+++.. .|+ .+.. ..++.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 4444355556666666555554422 12211 122233333322222233333333 122 1111 112222222
Q ss_pred hcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCHhHHHHHHHHHH--hcCCHhHHHHHHHHHhccCCCCCc
Q 008280 328 DYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKMPF--KPQPAIFGTLLSACR--VHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 328 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
-..|+ ...-+.+++-+.+.|-..+|..++..... +|+...+..++..-. ..=+..-+...++.++...-.++.
T Consensus 454 --~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 454 --VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred --hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 22333 33445677777888888888888877721 355666766665421 122356666777776543224445
Q ss_pred hhHHHHHHHHhhccChhHHHHHHH
Q 008280 403 GCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 403 ~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
.|......-...|+.+.+-.++-
T Consensus 532 -lw~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 532 -LWMDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred -HHHHHHHhhccCCCcccccHHHH
Confidence 66655555556666666655543
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.85 E-value=43 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHhhCCC
Q 008280 242 MYCKCGDLEDACKLFLEIQRK 262 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~~~ 262 (571)
.+...|++++|.++|+++.+.
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhcc
Confidence 344566666666666666543
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.84 E-value=10 Score=35.84 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 008280 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT-K--------NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS 199 (571)
Q Consensus 129 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 199 (571)
.....+...++..-....++++++..+-.+.. + ..++|-.++. .-++++++.++..=.+-|+-||.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchh
Confidence 33444455555555556677777776665543 1 2223332222 336678888877777788888888
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCC
Q 008280 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228 (571)
Q Consensus 200 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 228 (571)
+++.++..+.+.++...|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888877777776666543
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.43 E-value=2e+02 Score=35.58 Aligned_cols=144 Identities=14% Similarity=0.026 Sum_probs=91.1
Q ss_pred HHHHHHHcCCCHHHHHHHHhh----CCCCC--cchHHHHHHHHHHcCChHHHHHHHhh-CCCCChhHHHHHHHHHHhcCC
Q 008280 75 TMISGFVQKKNMAKARDLFLA----MPEKN--SVSWSAMISGYIECGQLDKAVELFKV-APVKSVVAWTAMISGYMKFGK 147 (571)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~----m~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 147 (571)
.+..+-.+++.+..|+..|+. ..+.+ ..-+-.+...|+..++++...-+... ...++ ....+-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 555677788999999999988 33322 22344445589999999888777663 33332 2234455667899
Q ss_pred HHHHHHHHhhCCCC--C-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhccCchHHHHHHHH
Q 008280 148 VDLAEKLFDEMPTK--N-LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV-LLGCSHLSSLQLGKQVHQ 222 (571)
Q Consensus 148 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~ 222 (571)
+++|...|+++.+. + ...++-++......|.++.++...+-.... ..+....++++ ..+-=+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999863 3 456777777777777887777655444332 12222233222 223345667777666654
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.33 E-value=16 Score=27.98 Aligned_cols=45 Identities=13% Similarity=0.334 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 008280 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 225 (571)
Q Consensus 181 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 225 (571)
++.+-++.+....+.|++....+.+.||.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555666666677787788888888888888888777777665
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.97 E-value=98 Score=31.71 Aligned_cols=166 Identities=8% Similarity=0.107 Sum_probs=83.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 230 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
+.|.....++++.+...-...-.+.+..+|.. .+-..+..++..|.++ ..++-..+++++.+.. -|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 34444555566666666556555556555542 3455666666666666 4456666666666543 23333333333
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCC------hHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAK------PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQPAIFGTLLSAC 377 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 377 (571)
.+...++.+.+..+|..+..+ +-|. .+.|.-|+... ..+.+.-+.+..++ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333336666666666665543 2221 22344443322 12334444443333 2222233334444455
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
....|+++|++++..+++.+..+.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhh
Confidence 6666677777777666665554433
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.89 E-value=1.3e+02 Score=33.10 Aligned_cols=187 Identities=17% Similarity=0.105 Sum_probs=102.4
Q ss_pred HhcCCHHHHHHHHHhhC----CCCh-------hhHHHHHHH-HHHcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 008280 244 CKCGDLEDACKLFLEIQ----RKDV-------VTWNAMISG-YAQHGKGEKALRLFDKMKDEG----MKPDSITFVALLL 307 (571)
Q Consensus 244 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~ 307 (571)
....++++|..+..+.. .++. ..|+++-.. ....|++++|+++-+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34677888888777654 2221 246655433 344688889988888765431 2233445566667
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHH---HH--HHHHHHcCCHHHH--HHHHHhC-----CCCCC----HhHHH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT---CM--VDLLGRAGKLVEA--VDLIKKM-----PFKPQ----PAIFG 371 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~~~A--~~~~~~~-----~~~p~----~~~~~ 371 (571)
+..-.|++++|..+.+...+. .-.-+..++. .+ ...+...|....| +..|... +.+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999988887665442 1122333332 22 2334556633322 2233222 11222 23344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhc----cCCCCCc--hhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFN----LNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
.++.++.+ .+.+..-....++ ..|.+-. ..+..|+.++...|+.++|.....++......
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 44444433 4555544444433 2333322 12236788888999999999998888764443
No 348
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.87 E-value=74 Score=30.21 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=15.8
Q ss_pred HHHHhhccChhHHHHHHHHH
Q 008280 409 ANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~m 428 (571)
+..+.++++|++|.+.|+.-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 44577899999999998743
No 349
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.78 E-value=3.1 Score=34.79 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
....+.++..|++.+..++.++++
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCchHHHHHc
Confidence 334444444444444444444444
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.58 E-value=1.2e+02 Score=32.69 Aligned_cols=148 Identities=11% Similarity=0.189 Sum_probs=96.8
Q ss_pred HHHHHhCCCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHH
Q 008280 13 LAGFAKQRGKLKDAQELFDKIPQ--P---DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87 (571)
Q Consensus 13 ~~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~ 87 (571)
++.+.+.+ .+++|...-+.-.. + -...+...|..+.-. |++++|-.+.-.|...+..-|.--+.-++..++..
T Consensus 363 i~Wll~~k-~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~-~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKK-KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFE-GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhh-HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhc-chHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 45556666 88888888776654 2 234677888888888 99999999999999888888888888888877766
Q ss_pred HHHHHHhhCCC-CCcchHHHHHHHHHHcCChHHHHHHHhhCC--------------------CCChhHHHHHHHHHHhcC
Q 008280 88 KARDLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFKVAP--------------------VKSVVAWTAMISGYMKFG 146 (571)
Q Consensus 88 ~A~~~~~~m~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------------~~~~~~~~~li~~~~~~g 146 (571)
....+.=.-+. -+...|..++-.+.. .+...-.++..... ..+..+.-.|+..|...+
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 54433222211 245567777776665 22222222222111 112233445888899999
Q ss_pred CHHHHHHHHhhCCCCCH
Q 008280 147 KVDLAEKLFDEMPTKNL 163 (571)
Q Consensus 147 ~~~~A~~~~~~~~~~~~ 163 (571)
++.+|..++-...++++
T Consensus 520 ~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 520 KYEKALPIYLKLQDKDV 536 (846)
T ss_pred ChHHHHHHHHhccChHH
Confidence 99999988877776544
No 351
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.22 E-value=1 Score=37.78 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 008280 348 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 381 (571)
Q Consensus 348 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 381 (571)
.++++.|.+++.+. ++...|..++..|...+
T Consensus 109 ~~~~~~a~e~~~~~---~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 109 LKDYEEAIEYAKKV---DDPELWEQLLKYCLDSK 139 (143)
T ss_dssp THCSCCCTTTGGGC---SSSHHHHHHHHHHCTST
T ss_pred HccHHHHHHHHHhc---CcHHHHHHHHHHHHhcC
Confidence 34455555444444 34556666666555444
No 352
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.70 E-value=44 Score=35.70 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----------hHHHHHHHHHhccCchHHHHHHHHHHHhC-C-CCC
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNA----------SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-P-LCK 231 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~ 231 (571)
.+-..++-.|....+++..+++.+.++.. ||. +.|...++--.+-|+-++|..+.--+++. | +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 35556777788888888888888888763 432 22333344444556677776666555543 2 223
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 008280 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT---FVALLLA 308 (571)
Q Consensus 232 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a 308 (571)
++|+-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 ---------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 345556643 33321 12234445556677788877655 4666543 3333333
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
-.+ .++...++ +. .-..|-..++|.|.+++-.++++-. + .+.+-.-..++.+|.+
T Consensus 333 aG~--~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHH
Confidence 221 11111111 11 1112445567788777766655422 2 2344456678888888
Q ss_pred HHHHHhccCCCC
Q 008280 389 AAMNLFNLNPAN 400 (571)
Q Consensus 389 ~~~~~~~~~p~~ 400 (571)
+.+.|+++.|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 888888887743
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.72 E-value=12 Score=34.98 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+++.....|...|.+.+|.++.++++.++|-+.. .+..|...++..|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~-~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ-DNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH-HHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455567789999999999999999999999988 99999999999999888888887775
No 354
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.66 E-value=41 Score=26.30 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 291 (571)
...++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|.. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 346777777777766652 222233333455677888998855444555678888876654 56788888888888776
Q ss_pred HcCCCCCHHHH
Q 008280 292 DEGMKPDSITF 302 (571)
Q Consensus 292 ~~g~~p~~~t~ 302 (571)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3444444
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.23 E-value=50 Score=35.51 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHcCChHHHHHHHhhC---CCCChhHHHHHHHHHHhc
Q 008280 106 AMISGYIECGQLDKAVELFKVA---PVKSVVAWTAMISGYMKF 145 (571)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 145 (571)
.+|-.|.++|++++|.++.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 4566667777777777776222 222334445555555443
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.27 E-value=19 Score=27.87 Aligned_cols=47 Identities=13% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC
Q 008280 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227 (571)
Q Consensus 181 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (571)
+..+-++.+....+.|++....+.|.+|.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555556667777777777777777777777777777766543
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.16 E-value=6.8 Score=29.76 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 388 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 388 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
..+++.++.+|++.. ....++..+...|++++|.+.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~-ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLD-ARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445566667777776 77777777777777777777776666543
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.87 E-value=19 Score=32.58 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCHh-------HHHHHHHHHhccC--CCC---CchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 368 AIFGTLLSACRVHKRLD-------LAEFAAMNLFNLN--PAN---AAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~--p~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
..+.-+...|+..|+.+ .|.+.|+++.+.+ |.. .......++.++.+.|+.++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45566667777777744 4555555555432 221 12266788999999999999999999987644
No 359
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.81 E-value=1.4e+02 Score=31.66 Aligned_cols=270 Identities=12% Similarity=0.054 Sum_probs=133.6
Q ss_pred HHHHHHHHhhCCC-CCHHHHHHHHHH-----HHHcCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHhccC--
Q 008280 148 VDLAEKLFDEMPT-KNLVTWNAMIAG-----YVENSWAEDGLKLLRMMIG-------LGIRPNASSLSSVLLGCSHLS-- 212 (571)
Q Consensus 148 ~~~A~~~~~~~~~-~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~ll~~~~~~~-- 212 (571)
...|.+.++.... .++..-..+... +....+.+.|+..|+.+.. .| +.....-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777654 344444444433 3345678888888888766 44 2223444455554422
Q ss_pred ---chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHhhCCC-ChhhHHHHHHHHHH----cCChH
Q 008280 213 ---SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRK-DVVTWNAMISGYAQ----HGKGE 281 (571)
Q Consensus 213 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~ 281 (571)
+.+.|..++....+.| .|+.... |..+|... .+...|.++|....+. .+.+.-.+...|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 5667888888887777 3333333 33333322 3567788888776543 33333333332222 23667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH---HH----cCCHHHH
Q 008280 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL---GR----AGKLVEA 354 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~A 354 (571)
.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+. +.+-....-..+++.. .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 7777777777766 3332222233334443 5555555444444331 2221111111111111 00 1234455
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhc-c--ChhHHHHHHHH
Q 008280 355 VDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM-K--KWDDVARIRLS 427 (571)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~ 427 (571)
...+.+...+-+......|...|.. ..+++.|...+..+.... .. ....|+.++.+. | .+..|.++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~-~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQ-ALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hH-HHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 5555555333344444444443322 234666666666665544 33 555666665432 1 14566666665
Q ss_pred HHh
Q 008280 428 MKE 430 (571)
Q Consensus 428 m~~ 430 (571)
..+
T Consensus 535 ~~~ 537 (552)
T KOG1550|consen 535 ASE 537 (552)
T ss_pred HHh
Confidence 544
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.30 E-value=8.1 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.0
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 406 VQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 406 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999888644
No 361
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=70.20 E-value=1.3e+02 Score=30.48 Aligned_cols=235 Identities=9% Similarity=-0.027 Sum_probs=146.7
Q ss_pred HHHHHhCCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHH
Q 008280 13 LAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90 (571)
Q Consensus 13 ~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~ 90 (571)
++++...| ..|...+-.... ++...+-....++... .+......+.+.+..++..+....+.++.+.+...-..
T Consensus 45 LdgL~~~G---~~a~~~L~~aL~~d~~~ev~~~aa~al~~~-~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG---KAATELLVSALAEADEPGRVACAALALLAQ-EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh---HhHHHHHHHHHhhCCChhHHHHHHHHHhcc-CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 55555544 345665544432 3333333333333333 33333566777777888888999999999998887776
Q ss_pred HHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHH
Q 008280 91 DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMI 170 (571)
Q Consensus 91 ~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 170 (571)
.+......++...-...+.++...+. +-...+...+...+..+...-+.++.+.++.+..-.+-.-....|...=..-+
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~ 199 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAAL 199 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHH
Confidence 66666666777666666677776542 22333444455778888888888888888765444444444567777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 008280 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250 (571)
Q Consensus 171 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 250 (571)
.+....|. .+|...+..... .++......+.......|. +.+...+..+.+.. .+-...+.+..+.|+..
T Consensus 200 ~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~-----~vr~~a~~AlG~lg~p~ 269 (410)
T TIGR02270 200 EAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQAA-----ATRREALRAVGLVGDVE 269 (410)
T ss_pred HHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcCh-----hhHHHHHHHHHHcCCcc
Confidence 88888888 777777666433 2333333333333333333 35555555555432 26777888889999998
Q ss_pred HHHHHHHhhCCC
Q 008280 251 DACKLFLEIQRK 262 (571)
Q Consensus 251 ~A~~~~~~~~~~ 262 (571)
.+.-+.+.|.++
T Consensus 270 av~~L~~~l~d~ 281 (410)
T TIGR02270 270 AAPWCLEAMREP 281 (410)
T ss_pred hHHHHHHHhcCc
Confidence 888888877654
No 362
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.49 E-value=47 Score=29.39 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=53.7
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCCC-----hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCC
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKR 382 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~ 382 (571)
...|++++|..-|...+.. .++. ...|..-..++.+.+.++.|++-..+. .+.|.- .....-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456666666666555542 2221 223444445566777777777655544 233321 222233446778889
Q ss_pred HhHHHHHHHHHhccCCCCC
Q 008280 383 LDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~ 401 (571)
++.|+.-|+++++.+|...
T Consensus 184 ~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHHHHhCcchH
Confidence 9999999999999999654
No 363
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.43 E-value=72 Score=29.28 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=62.1
Q ss_pred HHHHHcCCHHHHHHHHHhC---------CCCCCHhHHH-----------HHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 343 DLLGRAGKLVEAVDLIKKM---------PFKPQPAIFG-----------TLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+-+.+.|++.+|..-|.+. ..+|-..-|. ..-..+...|++-++++.-..++..+|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666666555543 2334433332 2234456788999999999999999999988
Q ss_pred hhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 403 GCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 403 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
+|..-+.+.+..=+.++|.+-|....+..
T Consensus 266 -A~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 266 -AYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred -HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99888888887777788888887776633
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.89 E-value=1.7e+02 Score=31.48 Aligned_cols=304 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCCHhHH-----H
Q 008280 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYV-ENSWAEDGLKLLRMMIGLGIRPNASSL-----S 202 (571)
Q Consensus 129 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~pd~~t~-----~ 202 (571)
+.++..|..||.+-.+| ++-+.+-+.--+..+..++-.+...+. ...+.++|...+.+....--+++..-+ .
T Consensus 27 ~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ 104 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQF 104 (608)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCC----CCcchHHHH-HHHHHhcCCHHHHHHHHHhhC-------CCChhhHHHH
Q 008280 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLC----KDTTALTPL-ISMYCKCGDLEDACKLFLEIQ-------RKDVVTWNAM 270 (571)
Q Consensus 203 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l-i~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~l 270 (571)
.++..+.+.+... |....+..++.--. +-...+.-+ +..+...++...|.+.++.+. .+-+..+-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q ss_pred HHHHHH--cCChHHHHHHHHHHHHcCCCC---------CHHHHHHHHH--HHHhcCcHHHHHHHHHHhHHhcCCCCChH-
Q 008280 271 ISGYAQ--HGKGEKALRLFDKMKDEGMKP---------DSITFVALLL--ACNHAGLVDLGIQYFDSMVNDYGIAAKPD- 336 (571)
Q Consensus 271 i~~~~~--~g~~~~A~~~~~~m~~~g~~p---------~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 336 (571)
+.+... .+..+++++.++++......+ .-.+|..++. .+...|+++.+.+.++++.....-..+..
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~ 263 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPS 263 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCcc
Q ss_pred ---------------------------------------hHHHHHHHHHHcCCHHHHHHHHHhC-----CCC--------
Q 008280 337 ---------------------------------------HYTCMVDLLGRAGKLVEAVDLIKKM-----PFK-------- 364 (571)
Q Consensus 337 ---------------------------------------~~~~li~~~~~~g~~~~A~~~~~~~-----~~~-------- 364 (571)
.|..-+-.+...|..++|.+++++. ...
T Consensus 264 w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 264 WPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC
Q ss_pred ------CCHhHHHHHHHHHH---------hcCCHhHHHHHHHHHhcc---------CCCCCchhHHHHHHHHhhccChhH
Q 008280 365 ------PQPAIFGTLLSACR---------VHKRLDLAEFAAMNLFNL---------NPANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 365 ------p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~---------~p~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
.+...|...+..+. ..+++..|....+.+... .+-.+. .+...+-.+-..|+.+.
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~yL~gl~~q~~g~l~~ 422 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPL-LHYLLGLYYQSTGDLEA 422 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHH-HHHHHHHHHHHcCCHHH
Q ss_pred HHHHHH--------HHHhCCCccC
Q 008280 421 VARIRL--------SMKENNVVKM 436 (571)
Q Consensus 421 a~~~~~--------~m~~~~~~~~ 436 (571)
|...|. .....+...+
T Consensus 423 A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 423 ALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHhhhHHhhhhhhccCCcchH
No 365
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.28 E-value=10 Score=38.06 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhHH-HHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 348 AGKLVEAVDLIKKM-PFKPQPAIF-GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 348 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
.+.++.|..++.++ ...||-..| .--..++.+.+++..|+.-+.++++.+|.... .|..=+.++.+.+.+.+|...|
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K-~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK-AYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh-eeeeccHHHHhHHHHHHHHHHH
Confidence 34444444444433 233433222 22224455555566666666666666665555 5555555555555555555555
Q ss_pred HH
Q 008280 426 LS 427 (571)
Q Consensus 426 ~~ 427 (571)
+.
T Consensus 96 ~~ 97 (476)
T KOG0376|consen 96 EK 97 (476)
T ss_pred HH
Confidence 43
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.76 E-value=21 Score=32.01 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
...-+..+.+.+.+.+|+...++- ..+|. ...-..++..++..|++++|..-++-+-.+.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566778889999999877554 44454 45667788899999999999999998888888765
No 367
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.62 E-value=1e+02 Score=28.10 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCCCCHhHHHH---HHH--HHH-hcCCHhHHHHHHHHHhccCCCCCc
Q 008280 343 DLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT---LLS--ACR-VHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~~--~~~-~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+.-+..|++.+|+++|++. ....+..-|.. ++. .|. ...+.-.+...+++-.+++|.-..
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 3345678899999999887 22223333322 222 232 336777788888888899997554
No 368
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.46 E-value=86 Score=27.05 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
+..++..+...|++-+|+++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 334455556666666666666553
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.55 E-value=20 Score=26.24 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=7.2
Q ss_pred cCcHHHHHHHHHHhHH
Q 008280 312 AGLVDLGIQYFDSMVN 327 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~ 327 (571)
....++|+..|....+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3344444444444444
No 370
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.15 E-value=4.7 Score=38.44 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 348 AGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 348 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
.|.+++|++.|... +..|. ...+..-.+++.+.++...|++-+..+++++|+... .|-.-..+..-.|.|++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~-~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK-GYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc-ccchhhHHHHHhhchHHHHHHH
Confidence 34455555555444 22222 233334444555556666666666666666666555 5555555555566666666666
Q ss_pred HHHHhCCCc
Q 008280 426 LSMKENNVV 434 (571)
Q Consensus 426 ~~m~~~~~~ 434 (571)
....+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 655555544
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.05 E-value=46 Score=26.95 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+..+-+.......+-|+.......+.||.+.+++..|.++|+-+..+ ..+....|..+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45555666666778899999999999999999999999999988764 3444445666553 444556666
Q ss_pred CC
Q 008280 362 PF 363 (571)
Q Consensus 362 ~~ 363 (571)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 372
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.94 E-value=87 Score=29.40 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH-
Q 008280 271 ISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR- 347 (571)
Q Consensus 271 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 347 (571)
|.+++..+++.+++...-+--+ +.++|...-. -|-.|++.+.+....++-..-.+. .-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6778888888887765544322 2233333333 333477778877777776666553 222223347766666654
Q ss_pred ----cCCHHHHHHHHHh
Q 008280 348 ----AGKLVEAVDLIKK 360 (571)
Q Consensus 348 ----~g~~~~A~~~~~~ 360 (571)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888887743
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.79 E-value=1.2e+02 Score=30.29 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=36.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCcHHHHHHHHHHhHH
Q 008280 273 GYAQHGKGEKALRLFDKMKDEGMKPDSI--TFVALLLACN--HAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 327 (571)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678899999999998876 555544 3334444443 45677888888887765
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.49 E-value=17 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 008280 270 MISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.45 E-value=19 Score=32.66 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCCCH-hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 363 FKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 363 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+.|+. ..|..-+-.+.+..+++.+..--.+++++.|+... ....|+........+++|+..+.+..
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk-~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK-AHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH-HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34554 33344444455566666666666666666666665 66666666666666666666665553
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.79 E-value=26 Score=26.22 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhH
Q 008280 145 FGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAED 181 (571)
Q Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 181 (571)
.|+.+.|+++++.++ +.+..|...+.++-..|..+-
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 355555555555555 555555555555555554433
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.69 E-value=31 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=15.1
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCC
Q 008280 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116 (571)
Q Consensus 84 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 116 (571)
|+.+.|.+++..++ +.+..|...+.++-..|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444444444444 444444444444444444
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.43 E-value=1.3e+02 Score=27.60 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=57.4
Q ss_pred HHHHHHHH--HcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCCH
Q 008280 73 WNTMISGF--VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGKV 148 (571)
Q Consensus 73 ~~~li~~~--~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 148 (571)
+..++.++ ...+++++|.+.+-.-.-. ..-...++.++...|+.+.|+.+++...++ +......++.. ..++.+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 33344443 4557777777776332111 111224677777778888888888776533 22233333333 566778
Q ss_pred HHHHHHHhhCCCCC-HHHHHHHHHHHHHcC
Q 008280 149 DLAEKLFDEMPTKN-LVTWNAMIAGYVENS 177 (571)
Q Consensus 149 ~~A~~~~~~~~~~~-~~~~~~li~~~~~~g 177 (571)
.+|...-+...++. ...|..++..+....
T Consensus 157 ~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 157 TEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 88877766665532 335666666555433
No 379
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=61.67 E-value=1.9e+02 Score=29.33 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=56.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008280 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311 (571)
Q Consensus 232 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 311 (571)
+..+-..-+.++.+.|..+..-.+-.-....|...-..-+.+....|. .+|...+..... .|+......+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHh
Confidence 333344444444444443222222222334455555555555666666 455555554322 1222222222222222
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC
Q 008280 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 362 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 362 (571)
.|. +++...+..+.++ +. +-...+.++++.|+...+.-+.+.|.
T Consensus 236 ~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 236 AGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred CCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 222 3555555555542 22 44456667777777776666666664
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.96 E-value=1.5e+02 Score=28.53 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=13.4
Q ss_pred HHHHHHHHHhccCCCCCc
Q 008280 385 LAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 385 ~a~~~~~~~~~~~p~~~~ 402 (571)
.|.+...++.+.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 466677788888888774
No 381
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.95 E-value=1.1e+02 Score=28.71 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=41.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--
Q 008280 170 IAGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-- 245 (571)
Q Consensus 170 i~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 245 (571)
|.+++..++|.+++...-+--+ +.++|...- .-|-.|++.+.+....++-...++..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6677777777777765544433 223333222 2222345555555555555444443222333335555544433
Q ss_pred ---cCCHHHHHHHH
Q 008280 246 ---CGDLEDACKLF 256 (571)
Q Consensus 246 ---~g~~~~A~~~~ 256 (571)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 34455554444
No 382
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.33 E-value=1.2e+02 Score=31.38 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCC--Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008280 237 TPLISMYCKCGDLEDACKLFLEIQRK--DV---VTWNAMISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 237 ~~li~~y~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
..|+.-|.+++++++|..++..|.=. .. .+.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777889999999999998888621 12 2233334444444434444444554443
No 383
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.10 E-value=88 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 191 (571)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999988876
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.48 E-value=89 Score=24.56 Aligned_cols=53 Identities=23% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 193 (571)
+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++...|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345566777777744444445577777765543 36677777777666665544
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.11 E-value=16 Score=20.68 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=20.2
Q ss_pred CCHhHHHHHHHHHhccCCCCCchhHHHHHH
Q 008280 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410 (571)
Q Consensus 381 g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~ 410 (571)
|+.+.+..+|++++...|.++. .|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~-~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE-LWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH-HHHHHHH
Confidence 4567788888888887776665 6655543
No 386
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.87 E-value=29 Score=20.98 Aligned_cols=29 Identities=17% Similarity=-0.028 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHhHHHHH--HHHHhccCC
Q 008280 370 FGTLLSACRVHKRLDLAEFA--AMNLFNLNP 398 (571)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p 398 (571)
|-++.-.+-..|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34445555566666666666 334444444
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.09 E-value=52 Score=34.16 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhCCC--CCh---hhHHHHHHHHHcCCCHHHHHHHHhhCCC-CCcc--hHHHHHHHHHH
Q 008280 42 NIMLSCILLNSDDVVAAFDFFQRLPI--KDT---ASWNTMISGFVQKKNMAKARDLFLAMPE-KNSV--SWSAMISGYIE 113 (571)
Q Consensus 42 ~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~d~~--~~~~li~~~~~ 113 (571)
+.+.+.|.+..|+..+|...+..... ++. ...-++...+-+.|..-+|--++....+ .+.+ -+..+.++++.
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am 295 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM 295 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH
Confidence 45556666666777777666554321 111 1233445556666766666655554432 1111 13345556666
Q ss_pred cCChHHHHHHHhhCC
Q 008280 114 CGQLDKAVELFKVAP 128 (571)
Q Consensus 114 ~g~~~~A~~~~~~~~ 128 (571)
.+++......|....
T Consensus 296 l~~~N~S~~~ydha~ 310 (886)
T KOG4507|consen 296 LGEYNHSVLCYDHAL 310 (886)
T ss_pred Hhhhhhhhhhhhhhh
Confidence 666665555555443
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=57.05 E-value=24 Score=25.83 Aligned_cols=45 Identities=7% Similarity=-0.035 Sum_probs=26.3
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCchhHH---HHHHHHhhccChhHHHHH
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAAGCYV---QLANIYAAMKKWDDVARI 424 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~---~l~~~~~~~g~~~~a~~~ 424 (571)
...+.+.|+..++++++..++.+. -|. .|..+|+..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777665554443 333 455556666766666554
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.88 E-value=77 Score=25.02 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888888888888888766
No 390
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.70 E-value=2.9e+02 Score=29.35 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHH----HH-HhccCchHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhc
Q 008280 179 AEDGLKLLRMMIGLGIRPNASSLSSVL----LG-CSHLSSLQLGKQVHQLVFK-------SPLCKDTTALTPLISMYCKC 246 (571)
Q Consensus 179 ~~~A~~~~~~m~~~g~~pd~~t~~~ll----~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~~ 246 (571)
...|..+++.....|. ...-..+. .+ .....+++.|..++..+.+ .| ++.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4678888888877662 22222222 12 4456789999999998877 55 445667788888875
Q ss_pred C-----CHHHHHHHHHhhCC-CChhhHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCcH
Q 008280 247 G-----DLEDACKLFLEIQR-KDVVTWNAMISGYAQH---GKGEKALRLFDKMKDEGMKPDSITFVALLLACN--HAGLV 315 (571)
Q Consensus 247 g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~ 315 (571)
. +.+.|..+|..... .++..--.+...|... .+...|.++|......|.. ...-+..+..... -..+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 4 56778888887654 2333333344433332 3567899999998887732 2222222221111 23367
Q ss_pred HHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 008280 316 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 359 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 359 (571)
..|..++.+..++ | .|...--...+..+.. ++.+.+.-.+.
T Consensus 381 ~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred HHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 8888888888765 4 3332222222333333 55555544443
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.57 E-value=48 Score=29.36 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=19.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC
Q 008280 364 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 364 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 398 (571)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555555555
No 392
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=54.47 E-value=2.3e+02 Score=28.10 Aligned_cols=109 Identities=16% Similarity=0.248 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH------------HHHHHHhcCCHhHHHHHHHHHhccCCCCCc----
Q 008280 339 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT------------LLSACRVHKRLDLAEFAAMNLFNLNPANAA---- 402 (571)
Q Consensus 339 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 402 (571)
..|...+-.+|++++|..++.+.++ .||++ -++.|...+++-.|.-+-+++....-+.+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 4567778889999999999998853 34443 245688889999998888877542221111
Q ss_pred --hhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 008280 403 --GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 451 (571)
Q Consensus 403 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f 451 (571)
..|..++....+.+.+=++.+.++...+-|-.+...--|+.+-..+-.|
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f 261 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF 261 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE
Confidence 2677888888899999999999999887776555333466544333333
No 393
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.11 E-value=20 Score=38.78 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=48.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHh
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 384 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 384 (571)
+|.-+.+.|-.+-|+.+.+.-..+ .+....+|+++.|++.-.++. |..+|..|+..-..+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 344455666666665544332222 123456788888888877763 6678888888888888888
Q ss_pred HHHHHHHHHh
Q 008280 385 LAEFAAMNLF 394 (571)
Q Consensus 385 ~a~~~~~~~~ 394 (571)
.|+..|++..
T Consensus 690 IaEm~yQ~~k 699 (1202)
T KOG0292|consen 690 IAEMCYQRTK 699 (1202)
T ss_pred HHHHHHHHhh
Confidence 8888887763
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=2.3e+02 Score=29.70 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHhcCCHhHHHHHHHHHhccCCC-CCchhHHHHHHHHh-hccChhHHHHHHHHHH
Q 008280 375 SACRVHKRLDLAEFAAMNLFNLNPA-NAAGCYVQLANIYA-AMKKWDDVARIRLSMK 429 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 429 (571)
....+.|-+..|.+..+-+++++|. +|. ....+++.|+ ++.+++=-+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl-~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPL-GILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCch-hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3446677777888888777888877 666 6667777765 5666766666666663
No 395
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.26 E-value=20 Score=32.31 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC
Q 008280 345 LGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 400 (571)
..+.|+.+.|.+++.+. ... .....|-.+...-.+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666666666655 222 234566666666667777777777777777766654
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.14 E-value=3.7e+02 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 191 (571)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.13 E-value=2.7e+02 Score=28.61 Aligned_cols=233 Identities=13% Similarity=0.153 Sum_probs=131.6
Q ss_pred HHHhhCCC--CCHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHC-CCCCC-HhHHHHHHHHHhccCc-hHHHHHHH
Q 008280 153 KLFDEMPT--KNLVTWNAMIAGYVENS------WAEDGLKLLRMMIGL-GIRPN-ASSLSSVLLGCSHLSS-LQLGKQVH 221 (571)
Q Consensus 153 ~~~~~~~~--~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~-g~~pd-~~t~~~ll~~~~~~~~-~~~a~~~~ 221 (571)
.+|++..+ +....|+..|..+...- ....-+.+|+..... +..++ ...|..+.-.+..... ...|..+.
T Consensus 303 ~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~ 382 (568)
T KOG2396|consen 303 AVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT 382 (568)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh
Confidence 56665544 34456666666655432 334455566655543 33443 3345554444444333 23333333
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh----hC----CCChhhHHHHHHHHHHcCC-hH-HHHHH-HHHH
Q 008280 222 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE----IQ----RKDVVTWNAMISGYAQHGK-GE-KALRL-FDKM 290 (571)
Q Consensus 222 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~----~~~~~~~~~li~~~~~~g~-~~-~A~~~-~~~m 290 (571)
..++..+...|..-+....+... ++.-+|.. .. .+-...|++.+ .|+ .. ..+.+ +...
T Consensus 383 ----~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 383 ----TELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred ----HHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 22334455555554444443211 22223332 22 23445666555 222 11 11222 2222
Q ss_pred HHcCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH---HHcCCHHHHHHHHHhC--CCC
Q 008280 291 KDEGMKPDSITFV-ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL---GRAGKLVEAVDLIKKM--PFK 364 (571)
Q Consensus 291 ~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~ 364 (571)
... ..|+..|+. .++.-+-+.|-..+|+..+..+.. -.+|+...|..+|+.= ..+| +.-+.++|+.+ .+-
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG 527 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC
Confidence 222 356776664 466777788889999999999876 4567788888887653 3344 77788888887 222
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc-cCCCC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFN-LNPAN 400 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~ 400 (571)
.|+..|.-.+.--..+|..+.+-.++.++.+ ++|..
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 6788898888877899999999888887765 56654
No 398
>PF15469 Sec5: Exocyst complex component Sec5
Probab=52.92 E-value=1.6e+02 Score=25.77 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
+..++..-.+......++.++++..- .+..-.-+.-|.+.|+++.+...|.....
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33334333444445555555555432 12233456667777888888877776654
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.90 E-value=56 Score=27.25 Aligned_cols=66 Identities=12% Similarity=-0.038 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhH
Q 008280 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 351 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
-+.|.++.+-|+ ...............|++..|..+...++..+|++.. +-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~-ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE-ARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH-HHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHhcc
Confidence 456677777775 2334444555667899999999999999999999987 88888888877664433
No 400
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.51 E-value=3.4e+02 Score=29.48 Aligned_cols=403 Identities=11% Similarity=0.017 Sum_probs=175.8
Q ss_pred hCCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC-CC-hhhHHHHHHHHHcCCCHHHHHHH
Q 008280 18 KQRGKLKDAQELFDKIPQP---DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-KD-TASWNTMISGFVQKKNMAKARDL 92 (571)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~-~d-~~~~~~li~~~~~~g~~~~A~~~ 92 (571)
+.| +...+.++-.++... .-..|..|..... . ...++....+++-+. |- ...-...+..+.+.+++...+..
T Consensus 45 ~~g-~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~-~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 45 DNR-QMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-N-QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HCC-CHHHHHHHHHhccCCCcHhHHHHHHHHhccc-c-CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 445 888888888877542 2233444433221 2 356666666666543 21 12223334455567777777763
Q ss_pred HhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCHH------------------HH
Q 008280 93 FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA---PVKSVVAWTAMISGYMKFGKVD------------------LA 151 (571)
Q Consensus 93 ~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~------------------~A 151 (571)
+.. +..+...--....+....|+.++|.+..+.+ ....+..++.+++.+.+.|.+. .|
T Consensus 122 ~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA 200 (644)
T PRK11619 122 SPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLV 200 (644)
T ss_pred cCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 322 2234444445566667777766565544433 1223455556665555444432 23
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh--ccCchHHHHHHHHHHHhCC-
Q 008280 152 EKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS--HLSSLQLGKQVHQLVFKSP- 228 (571)
Q Consensus 152 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g- 228 (571)
..+...+..........++..+ .++..+..++.. +.|+...-..++.++. ...+.+.|...+.......
T Consensus 201 ~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~ 272 (644)
T PRK11619 201 TYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQK 272 (644)
T ss_pred HHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 2222222110000111111111 111111111110 1122111111111111 1233455555555443221
Q ss_pred CCCC--cchHHHHHHHHHhcCCHHHHHHHHHhhCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008280 229 LCKD--TTALTPLISMYCKCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 304 (571)
Q Consensus 229 ~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 304 (571)
+.+. ..+...+..-.+..+...+|...++..... |...+...+..-...++++.+...+..|.... .-...-..-
T Consensus 273 ~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW 351 (644)
T PRK11619 273 LNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYW 351 (644)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHH
Confidence 1111 112222222222222234445555443321 22223333333335556665555555553321 112222334
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhc-----------CCCC------ChHh--------HHHHHHHHHHcCCHHHHHHHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDY-----------GIAA------KPDH--------YTCMVDLLGRAGKLVEAVDLIK 359 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~-----------~~~~------~~~~--------~~~li~~~~~~g~~~~A~~~~~ 359 (571)
+..+....|+.++|..+|+.+.... |.++ .+.. -..-+..+...|...+|...+.
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~ 431 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWA 431 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHH
Confidence 4555555566666666555542210 1110 0000 1122345666788888887776
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc---CCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 360 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL---NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 360 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
.+-...+......+...-...|..+.++....+.... .-..|. .|......+++.-.++.+.-.--...|.+..
T Consensus 432 ~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~-~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~ 508 (644)
T PRK11619 432 NLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPL-AWNDEFRRYTSGKGIPQSYAMAIARQESAWN 508 (644)
T ss_pred HHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCc-chHHHHHHHHHHcCCCHHHHHHHHHHhcCCC
Confidence 6532345555556666667788888887776544321 111223 4555666666555666655332222355554
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.36 E-value=39 Score=25.76 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=35.1
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCC--------chhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANA--------AGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.+.|++..|.+.+.+.+....... ..+...++..+...|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777777776666654221110 11445677788899999999999987764
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.19 E-value=32 Score=32.48 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 346 GRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.+.|+.++|..+|+.. ...|+ +....-+....-.+++.-+|-++|-+++...|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3456666666666544 22232 233333333334455555666666666666665554
No 403
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=51.83 E-value=76 Score=31.97 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHhCCCCCCH--hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 358 IKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 358 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
|.....+|.. .+..+-++.+.+++|+..|-.+.++++++.|...
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3344445543 4566677778899999999999999999998653
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.82 E-value=50 Score=29.25 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=30.0
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
...+.+......+...+.....|++.+|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444333333344677777777777777777777777766665
No 405
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.92 E-value=2.5e+02 Score=27.11 Aligned_cols=83 Identities=18% Similarity=0.021 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHhHHhcCC---CCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 314 LVDLGIQYFDSMVNDYGI---AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
-.+++.+.|........- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 356788888888763111 34566667777777888887766666665544567788888999999999999988999
Q ss_pred HHHhcc
Q 008280 391 MNLFNL 396 (571)
Q Consensus 391 ~~~~~~ 396 (571)
..++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 988884
No 406
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.09 E-value=1.6e+02 Score=27.85 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=31.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCcHHH
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV-------ALLLACNHAGLVDL 317 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~~~g~~~~ 317 (571)
+..-..+.+++++|+..+.+....|+..|..+.+ .+...|...|+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 4445566778888888888888888877776543 33444555554443
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.78 E-value=97 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=31.8
Q ss_pred HHHHHHHHHhc--cCCCCCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 385 LAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 385 ~a~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
.+..+|..|.. .+-..+. .|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~-fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLAL-FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788887755 4555555 888888889999999999888864
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.60 E-value=97 Score=29.88 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKM----PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
-=.+-|.+..++..|...|.+. --.|| .+.|+.-..+-...||+..++.-..+++..+|.+.. .|..=+.++.
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K-a~~R~Akc~~ 164 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK-AYIRGAKCLL 164 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hhhhhhHHHH
Confidence 3345577788888888888765 11244 467777777777889999999999999999999987 8888888888
Q ss_pred hccChhHHHHHHHHH
Q 008280 414 AMKKWDDVARIRLSM 428 (571)
Q Consensus 414 ~~g~~~~a~~~~~~m 428 (571)
...++++|....++.
T Consensus 165 eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHhhh
Confidence 888877766655443
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.47 E-value=1.3e+02 Score=25.24 Aligned_cols=76 Identities=8% Similarity=0.114 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---------CCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008280 136 TAMISGYMKFGKVDLAEKLFDEMP---------TKNLVTWNAMIAGYVENSW-AEDGLKLLRMMIGLGIRPNASSLSSVL 205 (571)
Q Consensus 136 ~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll 205 (571)
|.++.-...-+++.....+++.+. ..+..+|+.++.+..+..- ---+..+|..|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444442 2355578888888866555 334677888888877888888888888
Q ss_pred HHHhcc
Q 008280 206 LGCSHL 211 (571)
Q Consensus 206 ~~~~~~ 211 (571)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 888764
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.12 E-value=82 Score=26.00 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
....|.-++.+.|+++.++++.+.+++.+|++..
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444566788999999999999999999998865
No 411
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=47.85 E-value=44 Score=24.95 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChh
Q 008280 129 VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAE 180 (571)
Q Consensus 129 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 180 (571)
..++.+....-..-+..-+.+.|.++++.++.+...+|.....++...|...
T Consensus 27 ~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 27 SRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred hcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3333333333333444455666666666666666666666666666655443
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.44 E-value=3.7e+02 Score=29.87 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 008280 241 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320 (571)
Q Consensus 241 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 320 (571)
.....||+++.|++.-.++. |..+|..|+.....+|+.+-|+..|++.+. |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34566999999988877654 567899999999999999999999987654 2233334555688777666
Q ss_pred HHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+...... ..|.... .... .-.|+.++=.++++..+..| ..|.+ -..+|.-++|.++.++.-.
T Consensus 720 m~~iae~----r~D~~~~-~qna--lYl~dv~ervkIl~n~g~~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATGQ-FQNA--LYLGDVKERVKILENGGQLP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhHHH-HHHH--HHhccHHHHHHHHHhcCccc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 5544432 2232211 1111 23589999999999887443 22322 2368888999999888755
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.38 E-value=63 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.000 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 371 GTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
..+.......|+.++|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33455567788888888888888764
No 414
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.37 E-value=2.5e+02 Score=26.55 Aligned_cols=77 Identities=14% Similarity=-0.066 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHH----HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc------------
Q 008280 353 EAVDLIKKMPFKPQPAIFGTLLSAC----RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK------------ 416 (571)
Q Consensus 353 ~A~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g------------ 416 (571)
.|...+.++-..-+......|...| ....+.++|...|.++-+.+. .. ....+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~-a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GA-ACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HH-HHHHHH-HHHhcCCCchhhhhcccc
Confidence 5666666552222333333333333 223477788888888877766 33 555555 444444
Q ss_pred ---ChhHHHHHHHHHHhCCC
Q 008280 417 ---KWDDVARIRLSMKENNV 433 (571)
Q Consensus 417 ---~~~~a~~~~~~m~~~~~ 433 (571)
+...|...+......+.
T Consensus 249 ~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 249 KEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCCCHHHHHHHHHHHHHcCC
Confidence 55556666666555444
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.13 E-value=39 Score=31.99 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 306 (571)
-|+..|....+.|+.++|+.++++.++.|..--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999998776666665544
No 416
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.92 E-value=3.4e+02 Score=27.87 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=9.7
Q ss_pred HcCChhHHHHHHHHHHH
Q 008280 175 ENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 175 ~~g~~~~A~~~~~~m~~ 191 (571)
-.|++.+|++-...|.+
T Consensus 335 v~~~~~~al~~i~dm~~ 351 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKN 351 (629)
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 35666666665555554
No 417
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=45.94 E-value=22 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHHHcCcccCCccc
Q 008280 460 ELVSIHEKLKELEKRMKLAGYVPDLEFA 487 (571)
Q Consensus 460 ~~~~~~~~l~~~~~~m~~~g~~pd~~~~ 487 (571)
...+++..+++...+++..|+.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4566788889999999999999996544
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.84 E-value=3.4e+02 Score=27.54 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHH---CCC-CCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 008280 180 EDGLKLLRMMIG---LGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255 (571)
Q Consensus 180 ~~A~~~~~~m~~---~g~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 255 (571)
++...++++... .|+ ..+......++..+ .|+...+..+++.+...+... ..+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 444445544432 133 34444444444433 577777777776665431111 12222222
Q ss_pred HHhh---CCCChhhHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008280 256 FLEI---QRKDVVTWNAMISGYAQ---HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313 (571)
Q Consensus 256 ~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 313 (571)
+... ..++......+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2221 12222334455555554 4788889999999998887776555444444444333
No 419
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.75 E-value=45 Score=33.62 Aligned_cols=229 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-----------hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 008280 178 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-----------LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 246 (571)
Q Consensus 178 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 246 (571)
++++|.++.+. .|....|...+....+.|. +++-.++++.+.+.| ...+...-++.|.|.
T Consensus 29 d~~eav~y~k~------~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKS------IPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHh------CCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeeccccc
Q ss_pred CCHHHHHHHHHhhCCC-------------ChhhHHHHHHHH-----HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008280 247 GDLEDACKLFLEIQRK-------------DVVTWNAMISGY-----AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308 (571)
Q Consensus 247 g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 308 (571)
+++++|..-+++-.+. .+.....++... .++|-+ .+..+++-+...|+....--..+.---
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnlP 178 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTP-DARLLAEIILAGGFTSFEGGGISYNIP 178 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCC-cHHHHHHHHHHcCCCccCCCcceeccc
Q ss_pred HHhcCcHHHHHHHHH---HhHHhc---CCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 008280 309 CNHAGLVDLGIQYFD---SMVNDY---GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 382 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~---~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 382 (571)
|++.=-++++...|+ ++...| |+..+.+++..|-..++ +|....-.+++.++....+
T Consensus 179 YsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv-----------------PPsisiav~ilE~Lla~eq 241 (480)
T TIGR01503 179 YAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV-----------------PPSISNAIGIIEGLLAAEQ 241 (480)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc-----------------ChHHHHHHHHHHHHHHHHc
Q ss_pred HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeE--EEECCEEEEEecC
Q 008280 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW--IEVGTVVHEFRSG 454 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~--~~~~~~~~~f~~~ 454 (571)
--..+.-.|.++|+..+=......+++..-.-.+.+.| +.+...+|.+..+
T Consensus 242 ---------------------GVksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~ 294 (480)
T TIGR01503 242 ---------------------GVKNITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGG 294 (480)
T ss_pred ---------------------CCeEEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCC
No 420
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.30 E-value=1.6e+02 Score=26.16 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
..+.++..|...||++.|-++|.-++...+-+....|..=+.++.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 4455666666777777777777766665544444233333445555555444445555554
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.19 E-value=27 Score=28.60 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=25.3
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008280 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208 (571)
Q Consensus 173 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 208 (571)
.-..|.-.+|-.+|++|++.|-+||. |..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33457778899999999999988874 55666544
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.83 E-value=3.3e+02 Score=27.20 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008280 133 VAWTAMISGYMKFGKVDLAEKLFDEMPT------KNLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 133 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 191 (571)
....-+.+.|..+|+++.|.+.|.+... .-+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455667777778888888888777542 1223555666666666777666666665554
No 423
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.67 E-value=38 Score=30.64 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=51.0
Q ss_pred HHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
....++.+.+.+++.+++++-|+... .|..++..-.++|+.+.|.+.+++..+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~-gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAA-GWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhh-hhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 35678999999999999999999998 9999999999999999999999988775543
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.61 E-value=92 Score=31.23 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008280 137 AMISGYMKFGKVDLAEKLFDEM-----------PTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190 (571)
Q Consensus 137 ~li~~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 190 (571)
.|++.++-.|++..|+++++.+ +.-.+.++.-+.-+|.-.+++.+|++.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544443 22344566677777788888888888887665
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.45 E-value=1.4e+02 Score=30.04 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHcCChHHHHHHHhhCC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 008280 106 AMISGYIECGQLDKAVELFKVAP-----------VKSVVAWTAMISGYMKFGKVDLAEKLFDE 157 (571)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 157 (571)
.|++..+-.|++..|+++++.+. .-.+.++.-+.-+|.-.+++.+|.++|..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554332 11223333444455555555555555544
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.03 E-value=43 Score=31.73 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 008280 161 KNLV-TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 203 (571)
Q Consensus 161 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 203 (571)
+|.. -||..|....+.||.++|+.++++..+.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444 467899999999999999999999999987655555543
No 427
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.43 E-value=1.4e+02 Score=22.54 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=40.4
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC--CchhHHHHHHHHhhccChh-HHHHHHHHH
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN--AAGCYVQLANIYAAMKKWD-DVARIRLSM 428 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 428 (571)
.|......+...+...|+++.|++.+-.+++.+|+. .. .-..|+.++.-.|.-+ -+.+..++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~-ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDA-ARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCH-HHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccH-HHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 345667777778888888888888888888877654 34 6677777777777644 344444444
No 428
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.33 E-value=1e+02 Score=32.09 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHH
Q 008280 348 AGKLVEAVDLIKKM-PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424 (571)
Q Consensus 348 ~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~ 424 (571)
.|+...|...+... ..+|. .+....|.+...+.|-...|-.++.+.+.+....|. ++..++++|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl-~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPL-TFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch-HHHhcchhHHHHhhhHHHHHH
Confidence 46666666665554 11121 123344555555666666666666666666655555 677777777777777777777
Q ss_pred HHHHHhC
Q 008280 425 RLSMKEN 431 (571)
Q Consensus 425 ~~~m~~~ 431 (571)
|+...+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 7655543
No 429
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.29 E-value=2.6e+02 Score=25.43 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCM 341 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 341 (571)
+.+.-++.+.+.+...+++...++-.+.. +.|..+-..++..++-.|++++|..-++-.-+ +.|+ ..+|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34556777888888889988888777653 22444555677888888999988776665432 3333 4455555
Q ss_pred HHHHHHcCCHHHHH-HHHHhC--C-CCC-CHhHHHH-HHHHHH--hcCCHhHHHHHHHHHhccCCCCCc
Q 008280 342 VDLLGRAGKLVEAV-DLIKKM--P-FKP-QPAIFGT-LLSACR--VHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 342 i~~~~~~g~~~~A~-~~~~~~--~-~~p-~~~~~~~-l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
|.+ +.+. ++|.-- | +-- +...|.. |+.+.. .-|..+....+-+..++..|..+.
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 542 2222 233322 1 111 2234443 444432 223444455666677777777654
No 430
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.23 E-value=3.2e+02 Score=26.55 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH---cCCHHHHHH
Q 008280 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR---AGKLVEAVD 356 (571)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~ 356 (571)
.+.-+.++++..+.+ +-+.......+..+.+..+.++..+-++++... .+-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 345566777766653 234445666777777777777777778887764 23356677666665443 123445555
Q ss_pred HHHhC---------CC------CCC--Hh---HHHHHHHHHHhcCCHhHHHHHHHHHhccC
Q 008280 357 LIKKM---------PF------KPQ--PA---IFGTLLSACRVHKRLDLAEFAAMNLFNLN 397 (571)
Q Consensus 357 ~~~~~---------~~------~p~--~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (571)
+|.+. +. .++ .. ++.-+..-+...|..+.|..+++-+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 54433 10 011 11 22223333568899999999999888865
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.08 E-value=31 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008280 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 191 (571)
|-.-.-.+|.+|.+.|++++|.+...++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566777777777777776666543
No 432
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=43.05 E-value=1.8e+02 Score=23.64 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=30.1
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHH-HHHHHHHhcCCHhHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG-TLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~ 390 (571)
..+-.++..++.=.|..++|.++++..+.-++-...| -++..|+...+.++...+-
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4445556666666666666666666664434433332 3555565555554444433
No 433
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.23 E-value=3.1e+02 Score=26.10 Aligned_cols=45 Identities=18% Similarity=0.023 Sum_probs=18.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHH
Q 008280 343 DLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAE 387 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~ 387 (571)
..|..+|.+.+|.++.++. ... .+...|-.|++.+...|+--.+.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence 3444445555554444443 111 22334444444444444433333
No 434
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.36 E-value=29 Score=28.42 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=24.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 276 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 276 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
..|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345666899999999999988885 55666554
No 435
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.31 E-value=5.4e+02 Score=28.63 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 008280 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEM 158 (571)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 158 (571)
=+.|...|++++|+++-+.-++.=..+...-.+.|.+.+++..|-+++-++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 345667777777777655431111133444455666667777777776665
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.92 E-value=95 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=19.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+..|.+.|.+++|.+++++..+ +|+...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 3457777777777777777777 665543
No 437
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.19 E-value=5.1e+02 Score=27.66 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=33.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
+...|..-+..+...++.. ....+++...-.-.+......++..|.+.|..+.+.++.+.+-.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555554444433222 44444444433334555667788888888888888888776654
No 438
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=38.59 E-value=4.4e+02 Score=26.77 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
...|+.-|.-.|++.+|.+.+++++ +-....++.+++.+.-+.|+-+.-..+++..++.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3467778888999999999999884 3334578888888888888776666666655543
No 439
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.51 E-value=83 Score=23.50 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=15.8
Q ss_pred cCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcC
Q 008280 82 QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115 (571)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 115 (571)
...+.++|.++++.++.+...+|.....++-..|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3334444444444444444444444444444444
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.44 E-value=1.2e+02 Score=19.77 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666666677777777776666666555543
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.08 E-value=61 Score=22.49 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008280 250 EDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 250 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
+...++++.+.. .|..---..|.+|.+.|++++|.+++.++..
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444332 2444445678888888888888888887754
No 442
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.59 E-value=2.7e+02 Score=25.56 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCC-CCC
Q 008280 274 YAQHGKGEKALRLFDKMKDEGM-KPD 298 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~-~p~ 298 (571)
....|+++.|+++.+-.++.|. .|+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCc
Confidence 4567899999999998888874 344
No 443
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.21 E-value=2.2e+02 Score=25.02 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHhHHH
Q 008280 341 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 371 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 371 (571)
.+-.|.+.|.+++|.+++++.-..|+.....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 3445667777777777777663244443333
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.20 E-value=6.5e+02 Score=28.08 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=88.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCH----h---HHHHHHHH-HhccCchHHHHHHHHHHHhC----CCCCCcchHHHHHH
Q 008280 174 VENSWAEDGLKLLRMMIGLGIRPNA----S---SLSSVLLG-CSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLIS 241 (571)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~g~~pd~----~---t~~~ll~~-~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~ 241 (571)
....++.+|..+..+....-..|+. . .+..+-.. ....|+++.+..+-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467788888877776553212221 1 22222111 12456777777776666543 22344556666777
Q ss_pred HHHhcCCHHHHHHHHHhhCC----CChh---hHHHHH--HHHHHcCC--hHHHHHHHHHHHHc--CCCC----CHHHHHH
Q 008280 242 MYCKCGDLEDACKLFLEIQR----KDVV---TWNAMI--SGYAQHGK--GEKALRLFDKMKDE--GMKP----DSITFVA 304 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~~----~~~~---~~~~li--~~~~~~g~--~~~A~~~~~~m~~~--g~~p----~~~t~~~ 304 (571)
+..-.|++++|..+.....+ -++. .|..+. ..+...|+ ..+.+..|...... +-.| -.-+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888777665443 2333 233332 22444552 22233333332221 0111 1123444
Q ss_pred HHHHHHhc-CcHHHHHHHHHHhHHhcCCCCChHhH--HHHHHHHHHcCCHHHHHHHHHhC
Q 008280 305 LLLACNHA-GLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 305 ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
++.++.+. +...++..-+.--.. +...|-...+ ..|+..+...|++++|...++++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444441 111122221211111 1112222222 26677777788888888777766
No 445
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.12 E-value=1.8e+02 Score=23.68 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHh
Q 008280 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 226 (571)
Q Consensus 184 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (571)
+-++.+..-++.|++...-..+.+|.+.+++..|..+++-+..
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555556777777777778888887777777777776654
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.47 E-value=2e+02 Score=30.65 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=26.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCcH
Q 008280 269 AMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACNHAGLV 315 (571)
Q Consensus 269 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 315 (571)
+|..+|..+|++..+..+++.+...+ -+.=...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666776666666666665432 111123455556666666654
No 447
>PRK10941 hypothetical protein; Provisional
Probab=35.43 E-value=3.9e+02 Score=25.24 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 268 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
+.+-.+|.+.++++.|+...+.+... .|+. .-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444555555555555555555442 2322 2233233334555555555554444444
No 448
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.97 E-value=4e+02 Score=25.21 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=25.1
Q ss_pred CHHHHHHHHhhCCCC-CHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCC
Q 008280 147 KVDLAEKLFDEMPTK-NLVTWNAMIAGYVE----NSWAEDGLKLLRMMIGLGIR 195 (571)
Q Consensus 147 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 195 (571)
+...|.++|....+. +......|...|.. ..+..+|...|++....|..
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 355566666544433 22333334444433 22566677777766666643
No 449
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=34.63 E-value=17 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=16.5
Q ss_pred ceEEEecCCccccccCCccCC
Q 008280 547 REIIVRDTTRFHHFKDGTCSC 567 (571)
Q Consensus 547 ~~~~~~~~~~~h~~~~g~~s~ 567 (571)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 466789999999999998653
No 450
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=34.09 E-value=1.9e+02 Score=23.35 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHhc-------cCCCCCchhHH----HHHHHHhhccChhHHHHHHHHHHh
Q 008280 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFN-------LNPANAAGCYV----QLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|...+..|-.++...|++++++...++.+. ++.+.-. .|. .-+.++...|+.++|.+.|+..-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk-lWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK-LWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 451
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.91 E-value=5.5e+02 Score=26.49 Aligned_cols=362 Identities=13% Similarity=0.065 Sum_probs=180.2
Q ss_pred CHHHHHHHHhhCCCC-Ch--hhHHHHHHHHHcCC-CHHHHHHHHhhCCC--CCcchHH-----HHHHHHHHcCChHHHHH
Q 008280 54 DVVAAFDFFQRLPIK-DT--ASWNTMISGFVQKK-NMAKARDLFLAMPE--KNSVSWS-----AMISGYIECGQLDKAVE 122 (571)
Q Consensus 54 ~~~~A~~~~~~m~~~-d~--~~~~~li~~~~~~g-~~~~A~~~~~~m~~--~d~~~~~-----~li~~~~~~g~~~~A~~ 122 (571)
.++.|..+.+.|+.- |+ .++..|...|.+.. .+..|..++++..+ .+...|. .|+....-..++..|.+
T Consensus 69 HLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~e 148 (629)
T KOG2300|consen 69 HLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALE 148 (629)
T ss_pred HHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHH
Confidence 345555555556542 32 35666777777766 77888888877654 3444444 35566666788888888
Q ss_pred HHhhCCCC-Ch--hHHHHHHH------HHHhcCCHHHHHHHHh---hCCC---CCHH-------H-HHHHHHHHHHcCCh
Q 008280 123 LFKVAPVK-SV--VAWTAMIS------GYMKFGKVDLAEKLFD---EMPT---KNLV-------T-WNAMIAGYVENSWA 179 (571)
Q Consensus 123 ~~~~~~~~-~~--~~~~~li~------~~~~~g~~~~A~~~~~---~~~~---~~~~-------~-~~~li~~~~~~g~~ 179 (571)
++.-.-.. |. ..|.-++. ...-..+..+..++.+ +|.+ +|.. . .+.=+.-|.-.|+.
T Consensus 149 lLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~ 228 (629)
T KOG2300|consen 149 LLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQV 228 (629)
T ss_pred HHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccch
Confidence 87654322 21 22222111 1112223333333333 2222 2221 1 11223334555666
Q ss_pred hHHHHHHHHHHH---CCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCC---CCcchHHHHHHHHHhc--CCHHH
Q 008280 180 EDGLKLLRMMIG---LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC---KDTTALTPLISMYCKC--GDLED 251 (571)
Q Consensus 180 ~~A~~~~~~m~~---~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~y~~~--g~~~~ 251 (571)
..+...++++++ .+..|+...=-.++ ..... ..+..+.+..+. .-..+..++...|.+. .-.|+
T Consensus 229 rt~k~~lkQLQ~siqtist~~~~h~e~il----gsps~----~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe 300 (629)
T KOG2300|consen 229 RTVKPALKQLQDSIQTISTSSRGHDEKIL----GSPSP----ILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDE 300 (629)
T ss_pred hhhHHHHHHHHHHHhccCCCCCCcccccc----CCCCh----HHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHH
Confidence 665555555543 22221100000000 00000 001111110000 0001111122223221 12345
Q ss_pred HHHHHHhhCCCC--h--------hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH--H-----HHHHHHH-HHHhc
Q 008280 252 ACKLFLEIQRKD--V--------VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDS--I-----TFVALLL-ACNHA 312 (571)
Q Consensus 252 A~~~~~~~~~~~--~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~-----t~~~ll~-a~~~~ 312 (571)
|+...++.++.| . .+...++..-.-.|++.+|++-...|.+-- -.|.. . ..-.++. -|...
T Consensus 301 ~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv 380 (629)
T KOG2300|consen 301 AIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSV 380 (629)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhc
Confidence 555555555544 1 122333444456899999999999997632 23331 1 1122332 34567
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC--hHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH--------HHHH--HHhc
Q 008280 313 GLVDLGIQYFDSMVNDYGIAAK--PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT--------LLSA--CRVH 380 (571)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--------l~~~--~~~~ 380 (571)
+.++.|...|....+. --..| ...-..+.-.|.+.|+-+.-.++.+.++ .++..++.+ ++.+ ....
T Consensus 381 ~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred chHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 8899999888777653 22222 2233456677999999999999999885 232222111 1122 2468
Q ss_pred CCHhHHHHHHHHHhccCC-C-----CCchhHHHHHHHHhhccChhHHHHHHH
Q 008280 381 KRLDLAEFAAMNLFNLNP-A-----NAAGCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 381 g~~~~a~~~~~~~~~~~p-~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
+++.+|...+.+.++..- . ..- ....|+..+...|+..++.+...
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~-~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTAC-SLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHhcchHHHHhccc
Confidence 899999999998877541 1 111 34567777778888877766543
No 452
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.61 E-value=96 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 008280 143 MKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSW 178 (571)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 178 (571)
+..-+.+.+.++++.++.+...+|..+..++...+.
T Consensus 45 ~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 45 AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 344455666666666666666666666666654443
No 453
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.61 E-value=2.6e+02 Score=23.45 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=19.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 351 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 351 (571)
++....+.+..-.|.++++.+.+. +...+..|--.-++.+...|-+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 333444444444555555555543 2223333222333445555543
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.04 E-value=4e+02 Score=24.32 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---DSITFV--ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 340 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 340 (571)
-.|.|+--|.-+..+.+|-+.|.. +.|+.| |..++. .-+......|+++.|.+..+++... -+..|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555555555555555555543 234443 222222 2344556677777777766665433 33334333222
Q ss_pred HHH----HHHHcCCHHHHHHHHHhC
Q 008280 341 MVD----LLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 341 li~----~~~~~g~~~~A~~~~~~~ 361 (571)
|.. =+.|.|..++|+++.+.-
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 145677777777776543
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.81 E-value=4.7e+02 Score=25.13 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH----------HcCCHHH
Q 008280 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG----------RAGKLVE 353 (571)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~ 353 (571)
.++++.|.+.++.|.-.+|..+.-.+++.=.+.....+|+.+..+ ... +..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888889999888888777778877888888899888753 111 333333222 2578888
Q ss_pred HHHHHHhCC
Q 008280 354 AVDLIKKMP 362 (571)
Q Consensus 354 A~~~~~~~~ 362 (571)
..++++.-|
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 888888765
No 456
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.70 E-value=1.2e+02 Score=29.02 Aligned_cols=76 Identities=4% Similarity=0.024 Sum_probs=48.6
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHH-HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHH
Q 008280 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGT-LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407 (571)
Q Consensus 331 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 407 (571)
+..|+..|...+.-..+.|.+.+...+|.+. ..+.|+..|-. -.--+..+++++.+..+|.+.+.++|++|. .|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~-iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR-IWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch-HHHH
Confidence 4455666665555445556666666666555 22234555643 223356788999999999999999999887 6654
No 457
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.69 E-value=5e+02 Score=25.35 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 008280 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNH------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 353 (571)
.++++.++.+....+. |........|.+|-. .-++..-..+|+.+.. +.|++.+--.-.-+++..--.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 5688888888877764 788887777766632 2356666677776653 45664432222223344444666
Q ss_pred HHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 354 AVDLIKKMPFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 354 A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
++.+.+.+..+|. ...+..-...+.+.|+.++|...|++++.+.++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 6666666643322 234455556688999999999999999998887654
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.47 E-value=2.8e+02 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=11.6
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 008280 270 MISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m 290 (571)
|..-|...|++++|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444555555666665555554
No 459
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.00 E-value=6.8e+02 Score=26.69 Aligned_cols=60 Identities=3% Similarity=0.008 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008280 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPTKN-LVTWNAMIAGYVENSWAEDGLKLLRMMIGLG 193 (571)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 193 (571)
+..++.|+...... +.++-.++++++.. . ...|..++++....|-..-..-+.+.+....
T Consensus 310 ~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 310 AAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 34455555544332 34555555555443 2 5667777777777776555555544444433
No 460
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.92 E-value=7.1e+02 Score=26.90 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=15.9
Q ss_pred HHHcCCHHHHHHHHHhCCCCC
Q 008280 345 LGRAGKLVEAVDLIKKMPFKP 365 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~~~~p 365 (571)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 467899999999999998777
No 461
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.87 E-value=5.2e+02 Score=26.79 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=15.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHh
Q 008280 175 ENSWAEDGLKLLRMMIGLGIRPNAS 199 (571)
Q Consensus 175 ~~g~~~~A~~~~~~m~~~g~~pd~~ 199 (571)
..++++.|+.++.+|...|..|...
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4566777777777776666555433
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.69 E-value=4.6e+02 Score=24.59 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCcHH-HHH
Q 008280 245 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK----MKDEGMKPDSITFVALLLACNHAGLVD-LGI 319 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 319 (571)
+.+++++|.+++..- ...+.++|+...|-++-.- ..+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456677777665432 2234455554444433322 233455555555444444444332111 111
Q ss_pred HHHHHhH---Hh-cCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 320 QYFDSMV---ND-YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 320 ~~~~~~~---~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
++.+.+. +. ..-.-++.....+...|.+.|++.+|+.-|-... .|+...+..++.-....|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 1111111 11 1122357788889999999999999988776542 2233332223332222332
Q ss_pred cCCCCCchhHH-HHHHHHhhccChhHHHHHHHHHHhC
Q 008280 396 LNPANAAGCYV-QLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 396 ~~p~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
|.+.. .|. ..+--|...|+...|...+....++
T Consensus 137 --~~e~d-lfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEAD-LFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HH-HHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --Ccchh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33323 333 3444567788999999988777654
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.63 E-value=9.1e+02 Score=28.07 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----hHHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP----AIFGTL 373 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l 373 (571)
|..+++.+...+..+.+.++-...++. ++++ +.+++++..-....|.+-+|.+.+-+. ||. .....|
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRql 1060 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHH
Confidence 555666666667777776666655552 3332 335566666666677777777666554 332 234444
Q ss_pred HHHHHhcCCH------------hHHHH-HHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHH
Q 008280 374 LSACRVHKRL------------DLAEF-AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 424 (571)
Q Consensus 374 ~~~~~~~g~~------------~~a~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~ 424 (571)
+..+...|.. ++.+. +++..-...|-.....|..|--.+...++|.+|..+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 4444444432 23333 334443444443331444444445667777776554
No 464
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=30.60 E-value=3.3e+02 Score=22.90 Aligned_cols=50 Identities=14% Similarity=0.271 Sum_probs=29.5
Q ss_pred ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008280 263 DVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 312 (571)
+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44556666666644433 223555666666666666666677777666654
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.49 E-value=5.9e+02 Score=25.81 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008280 165 TWNAMIAGYVE---NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 208 (571)
Q Consensus 165 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 208 (571)
.+..+++++.+ .++++.|+..+..|...|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455555555 467888888888888877666654444444443
No 466
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=30.35 E-value=5.3e+02 Score=25.24 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHc---CChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 008280 103 SWSAMISGYIEC---GQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVEN 176 (571)
Q Consensus 103 ~~~~li~~~~~~---g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 176 (571)
.++++++.-... -.++.|...|..-...+ ......+.+.+++.++-+.+..+-+.+..-......++..++-..
T Consensus 131 ~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~ 210 (340)
T PF12069_consen 131 MFHAQVRAQLGQPASQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQ 210 (340)
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCC
Confidence 455555543332 24666666654333211 123345678888888877776666666653344455565555444
Q ss_pred CChhH-HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcc
Q 008280 177 SWAED-GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 234 (571)
Q Consensus 177 g~~~~-A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 234 (571)
.-.+. +..+++.+... ||......++++.+...........+..++......+..
T Consensus 211 ~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e 266 (340)
T PF12069_consen 211 PLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPE 266 (340)
T ss_pred CCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChH
Confidence 43333 33444444443 888888899999888777777777666666654333333
No 467
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=5.2e+02 Score=25.11 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHh---cCCCCChHhHHHHHH-HH----HHcCCHHHHHHHHHhCCC---CCCHhH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVND---YGIAAKPDHYTCMVD-LL----GRAGKLVEAVDLIKKMPF---KPQPAI 369 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~-~~----~~~g~~~~A~~~~~~~~~---~p~~~~ 369 (571)
.......-|++.|+.+.|.+.+....++ .|.+.|+..+..-+. .| .-...+++|..++++-+. +.-..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4555666778888888887777655432 244444333321111 11 122345666667766641 111234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 370 FGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
|..+- |....++.+|-.+|-..+.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 43332 3455667777777666554
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.14 E-value=2e+02 Score=26.71 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC--------CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKMP--------FKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
-+..-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34555566666666666665551 0111233344445555666666655554443
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.91 E-value=3.9e+02 Score=27.97 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC--CH---HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008280 135 WTAMISGYMKFGKVDLAEKLFDEMPTK--NL---VTWNAMIAGYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 135 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 191 (571)
...|+.-|.+.+++++|..++..|.-. .. .+.+.+.+.+.+..--.+....++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 446777888888899998888888631 11 2344445555555545555555555554
No 470
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.90 E-value=4.5e+02 Score=27.08 Aligned_cols=139 Identities=20% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC------------ChhhHHHHHH
Q 008280 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK------------DVVTWNAMIS 272 (571)
Q Consensus 205 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~ 272 (571)
+.++....++..++.-.+.+.... ..+......--..+.-.|++.+|.+++....-. .-..||.|..
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHHcCChHHHHHHHHHHHH-------cCCCC----------CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCCh
Q 008280 273 GYAQHGKGEKALRLFDKMKD-------EGMKP----------DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 335 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~-------~g~~p----------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 335 (571)
.+.+.|.+.-+..+|.+..+ .|++| .-.......-.+.+.|++-.|.+.|..... -+..++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCc
Q ss_pred HhHHHHHHHHH
Q 008280 336 DHYTCMVDLLG 346 (571)
Q Consensus 336 ~~~~~li~~~~ 346 (571)
..|-.|.+++.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
No 471
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.86 E-value=2.3e+02 Score=24.46 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 008280 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352 (571)
Q Consensus 290 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 352 (571)
++..|++++..-. .++......+..-.|.++++.+.+. +...+..|--.-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666555433 3344444445555677788777665 44555554445567777777764
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=5e+02 Score=24.69 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=64.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH-------HHHHHHHhccCchHHHHHHHH----HHHhCCCCCCcchHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL-------SSVLLGCSHLSSLQLGKQVHQ----LVFKSPLCKDTTALT 237 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-------~~ll~~~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~ 237 (571)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|.+.|+...-.+... .|....-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445566778899999999999988887766543 345555666665544333322 122222233344555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhhCC---C-C-----hhhHHHHHHHHHHcCChHHHHHHHH
Q 008280 238 PLISMYCKC-GDLEDACKLFLEIQR---K-D-----VVTWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 238 ~li~~y~~~-g~~~~A~~~~~~~~~---~-~-----~~~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
+|++.+... ..++.-..+.....+ + . ...=.-+|..+.+.|++.+|+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 566555433 234554554444332 1 1 1112235566666666666666543
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.44 E-value=1.7e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=-0.029 Sum_probs=24.1
Q ss_pred HHHHHHhcc-CCCCCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 388 FAAMNLFNL-NPANAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 388 ~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
+.++++... .|-.|. .+..|+..|++.|+-+.|.+-|+.
T Consensus 58 ~~~ek~~ak~~~vpPG-~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 58 KYLEKIGAKNGAVPPG-YHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCCCCCCc-HHHHHHHHHhhcCChHHHHHHHHH
Confidence 344444332 344455 777777777777777777776654
No 474
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.06 E-value=1.5e+02 Score=22.51 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=18.8
Q ss_pred HHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcC
Q 008280 80 FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115 (571)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 115 (571)
.+..-+.+++.++++.++.+.+.+|..+..++-..+
T Consensus 44 ~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 44 MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 333344555555555555555555555555554433
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.68 E-value=4.1e+02 Score=25.02 Aligned_cols=58 Identities=22% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.+=+++.+.++++.|....++.+.++|+++. -..--+-+|.+.|...-|.+-+..-.+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~-eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPY-EIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChh-hccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3445678889999999999999999999876 666778889999998888887776544
No 476
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=4.9e+02 Score=24.11 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=45.5
Q ss_pred HHhcCCHHHHHHHHHhhC--CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCcHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQ--RKDV-VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVALLLACNHAGLVDLG 318 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 318 (571)
|.....++.|...|.+.. .|.+ .-|+.-+..+.+..+++.+..--.+.++ +.||.+- -..+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334455666766666544 3444 3355566667777777766665555544 4556543 22333445556666666
Q ss_pred HHHHHHh
Q 008280 319 IQYFDSM 325 (571)
Q Consensus 319 ~~~~~~~ 325 (571)
...+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666554
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.55 E-value=3.2e+02 Score=29.20 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=45.9
Q ss_pred HHHHHHHHcCChHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCCHH------HHHHHHhhCC-CCCHHHHHHHHHH
Q 008280 106 AMISGYIECGQLDKAVELFKVAPVKS------VVAWTAMISGYMKFGKVD------LAEKLFDEMP-TKNLVTWNAMIAG 172 (571)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 172 (571)
+|+.+|..+|++-.+.++++.....+ ...+|..++-.++.|.++ .|.++++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78889999999999988888765332 255677777777777653 3444444432 3456677666665
Q ss_pred HHH
Q 008280 173 YVE 175 (571)
Q Consensus 173 ~~~ 175 (571)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 478
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.40 E-value=8.6e+02 Score=26.71 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=52.2
Q ss_pred hHHHHHHHHH-HHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 008280 180 EDGLKLLRMM-IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258 (571)
Q Consensus 180 ~~A~~~~~~m-~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 258 (571)
++....+.+. ...|+..+......++..+ .|++..+..+++++...|. ...+.. ....++
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e-------------~V~~lL-- 241 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAEN-------------DVRQMI-- 241 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHH-------------HHHHHH--
Confidence 3444444433 3467777777776666554 4788888888877665331 111111 111111
Q ss_pred hCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008280 259 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298 (571)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 298 (571)
...+......|+.++. .++...++.+++++...|..+.
T Consensus 242 -G~~d~~~If~LldAL~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 242 -GAVDKQYLYELLTGII-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cccCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 1112223334444444 3677788888888877776544
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.27 E-value=3.1e+02 Score=24.49 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDE 293 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 293 (571)
....+.++..+...|+++.|.+.|.-+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 346777888888899999999999888765
No 480
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=27.01 E-value=1.7e+02 Score=29.19 Aligned_cols=17 Identities=24% Similarity=0.061 Sum_probs=8.5
Q ss_pred HHHHHHHcCCHHHHHHH
Q 008280 341 MVDLLGRAGKLVEAVDL 357 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~ 357 (571)
|+-.|.+.++.+-|+.-
T Consensus 234 lv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNH 250 (569)
T ss_pred HHHhhhhcCCCchHHHH
Confidence 34445555555555543
No 481
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.69 E-value=6.2e+02 Score=24.81 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 008280 239 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317 (571)
Q Consensus 239 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 317 (571)
+.+.++|.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 55666666666555555555544333444444444433332222 23334444332 677777777777777666555
Q ss_pred HHHHHHHhHH
Q 008280 318 GIQYFDSMVN 327 (571)
Q Consensus 318 a~~~~~~~~~ 327 (571)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554555544
No 482
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.63 E-value=6.7e+02 Score=25.22 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC---------CCCCCc
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---------PLCKDT 233 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------g~~~~~ 233 (571)
.+.-+...|...|+.+.|++.|.+.+.-- .+--...+..++....-.|++.....+-..+.+. .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 55566677777777777777777644321 1112233444444445555555554444443332 123344
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhh
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEI 259 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~ 259 (571)
..+..|.....+ ++..|.+.|-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 445555554443 666666655443
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.44 E-value=5.4e+02 Score=24.09 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 310 (571)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36677888899999999999998887654333333322223222222222221 111112222 345
Q ss_pred hcCcHHHHHHHHHHhHHh
Q 008280 311 HAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~ 328 (571)
..+++..|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567777777777666543
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.33 E-value=3.5e+02 Score=25.71 Aligned_cols=97 Identities=6% Similarity=0.021 Sum_probs=50.5
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHH-HHHHHHHhcCCHhHHHHHHHHHhccCCCCCch
Q 008280 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPAIFG-TLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403 (571)
Q Consensus 332 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 403 (571)
.-..+.+..+.+-|++.++.+.+.+..++. +.+-|+..-. .|.-.|....-.++-++....+++.+-+-...
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 334567778888899999999888887654 4444443221 22222334444555566666666655432110
Q ss_pred -hHHH-HHHHHhhccChhHHHHHHHHH
Q 008280 404 -CYVQ-LANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 404 -~~~~-l~~~~~~~g~~~~a~~~~~~m 428 (571)
-|-. -+.-+....++.+|..++-..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111 112233445566666655433
No 485
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.30 E-value=4.7e+02 Score=25.35 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCC-h----hhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 239 LISMYCKCGDLEDACKLFLEIQRKD-V----VTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 239 li~~y~~~g~~~~A~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
|.-.-.|.|++.+|.+.|.++.+.- . ..-..+|.++....-+.+...++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445677777777776655321 1 12234555555544444444444433
No 486
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=26.19 E-value=5.5e+02 Score=25.98 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHH--------HHhcCCHHHHHHHHHhhCC--
Q 008280 192 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM--------YCKCGDLEDACKLFLEIQR-- 261 (571)
Q Consensus 192 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~~~~-- 261 (571)
..+.||..+.+.+.+.++..-..+-...+++.-.+.+ .|-...+.+||-. -.+...-+++.++++.|+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4578999988888887777777888888888888776 4444444443321 2345567899999999884
Q ss_pred --CChhhHHHHHHHHHH
Q 008280 262 --KDVVTWNAMISGYAQ 276 (571)
Q Consensus 262 --~~~~~~~~li~~~~~ 276 (571)
.|+.-+-+|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 466667777776653
No 487
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.43 E-value=2.2e+02 Score=28.31 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhcCCHh---HHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 367 PAIFGTLLSACRVHKRLD---LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
..+-..++..+...++.+ +|..+++..+...|.+.. .-..|+..|...|-.+.|.+.|..+
T Consensus 180 lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~-~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 180 LLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQ-LKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHhc
No 488
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.40 E-value=5.4e+02 Score=23.74 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHH
Q 008280 137 AMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 216 (571)
Q Consensus 137 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 216 (571)
--+..|++.-++.-|-..++++.+|= .+--+ +--|.+..+..--.++.+-...+++.-+...+-.++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPI-QSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPI-QSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhH-HhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 34667777777777777777766541 11111 122333333333333444444455544444333332 345566666
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008280 217 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296 (571)
Q Consensus 217 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
|...++.-... -| +-.+..+|+-..+|.+.....|+..+. .+++++|.+.+.++-+.|..
T Consensus 211 alNnLQst~~g------------------~g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 211 ALNNLQSTVNG------------------FG-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYS 270 (333)
T ss_pred HHHHHHHHhcc------------------cc-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCC
Confidence 65555433321 01 122345666666777777777777654 46788999999999888887
Q ss_pred CCHHHHHHHHHHHHh
Q 008280 297 PDSITFVALLLACNH 311 (571)
Q Consensus 297 p~~~t~~~ll~a~~~ 311 (571)
|... .+.+.+++-.
T Consensus 271 p~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 271 PEDI-ITTLFRVVKN 284 (333)
T ss_pred HHHH-HHHHHHHHHh
Confidence 7654 2344444433
No 489
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=25.39 E-value=1.2e+02 Score=28.84 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ 366 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 366 (571)
..+.|+.++|..+|..... +.|+ +....-+........++-+|-++|-+. .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3567899999999998874 4454 555555555555556677777776555 44443
No 490
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=25.31 E-value=3e+02 Score=20.69 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=17.1
Q ss_pred hcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 008280 144 KFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENS 177 (571)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 177 (571)
+..+.++|..+++.++.+...+|.....++-..|
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344455555555555555555555555554444
No 491
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.16 E-value=5.1e+02 Score=23.44 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHHH-HHHHHHHhcCcHHHHHHHHHHhHHh
Q 008280 281 EKALRLFDKMKDEGMKP----DSITFV-ALLLACNHAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 281 ~~A~~~~~~m~~~g~~p----~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~ 328 (571)
..|++.|.+.....-.| +..+.. .+.....+.|+.++|.+.|..+...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35566666554432111 222322 3334556677777777777777754
No 492
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.10 E-value=6.2e+02 Score=24.28 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC-CChhhHHHHHHHHHHcCChHHHHHHHH
Q 008280 214 LQLGKQVHQLVFKSPL----CKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 214 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
.+.+.+.+......+. ..++.....+.....+.|+.+.-..+++.... ++......++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4455555555554311 22334444455555555655544444444432 344445555566555555555555555
Q ss_pred HHHH
Q 008280 289 KMKD 292 (571)
Q Consensus 289 ~m~~ 292 (571)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 5554
No 493
>PRK02287 hypothetical protein; Provisional
Probab=24.70 E-value=4.6e+02 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+..+++.++.=.|..++|.++++..
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 3344444444455555555555444
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.67 E-value=1.9e+02 Score=22.88 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 315 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 315 (571)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556777777777766666666666666666666543
No 495
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.55 E-value=67 Score=31.04 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=74.7
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHhHHHH
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 388 (571)
..|.++.|++.|-..++ --++....|.--..++.+.++...|++=++.. .+.||. .-|-.-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45678888888877665 23444555655666677777777777766554 344553 233333445567899999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 389 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 389 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.++.+.+++-+.. +=..|-...-+++..++-...+++.++
T Consensus 204 dl~~a~kld~dE~--~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDYDEA--NSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccccHH--HHHHHHHhccchhhhhhchhHHHHHHH
Confidence 9999988776543 344555666666666666665555443
No 496
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.54 E-value=7.4e+02 Score=24.99 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 008280 161 KNLVTWNAMIAGYVE---NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212 (571)
Q Consensus 161 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 212 (571)
++-..+.-+|+++.+ -.+++.|+-.+-+|.+.|-.|....-..+.-++-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 454566677777765 3678888888899988886565555444444444433
No 497
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.33 E-value=4.1e+02 Score=22.20 Aligned_cols=41 Identities=12% Similarity=-0.031 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008280 167 NAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207 (571)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 207 (571)
..++..+.+.+++-.|.++|+++.+.+...+..|.-..|..
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~ 64 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKL 64 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 34455555555555566666666655444344443333333
No 498
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=24.27 E-value=6.6e+02 Score=24.36 Aligned_cols=119 Identities=5% Similarity=0.018 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHh---cCCHhHHHHH
Q 008280 315 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRV---HKRLDLAEFA 389 (571)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~---~g~~~~a~~~ 389 (571)
.+.-+.++++.++. .+.+......++..+.+..+.++..+-++++ ...-+...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35566788887764 3456777888888888888888888888877 222357899998887654 2346677777
Q ss_pred HHHHhcc------C-----CCCCc------hhHHHHHHHHhhccChhHHHHHHHHHHhCCCcc
Q 008280 390 AMNLFNL------N-----PANAA------GCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 435 (571)
Q Consensus 390 ~~~~~~~------~-----p~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 435 (571)
|.+.+.. + ++.+. ..+..+......+|-.+.|..+++.+.+.+...
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence 7666431 1 11111 133455555678999999999999999987743
No 499
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.21 E-value=4.5e+02 Score=25.12 Aligned_cols=140 Identities=11% Similarity=-0.021 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008280 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRP 196 (571)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 196 (571)
....++-++.+...-....-.++..+-+.+++....+.+..+ ..+..-...+..+...|++..|+++..+..+.--.-
T Consensus 83 ~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 83 CKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q ss_pred CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 008280 197 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 258 (571)
Q Consensus 197 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 258 (571)
...+...=+..-...-...-...+=..+.+.-..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 161 ~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 161 KGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 500
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=24.07 E-value=2.6e+02 Score=20.98 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=11.5
Q ss_pred ChHHHHHHHhhCCCCChhHHHHHHHHHH
Q 008280 116 QLDKAVELFKVAPVKSVVAWTAMISGYM 143 (571)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~li~~~~ 143 (571)
..++|.++++.+..++..+|....+++-
T Consensus 43 ~~~qa~~Lld~L~trG~~Af~~F~~aL~ 70 (86)
T cd08323 43 QKEKAVMLINMILTKDNHAYVSFYNALL 70 (86)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344444444444444444444444333
Done!