Query 008280
Match_columns 571
No_of_seqs 750 out of 4554
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 22:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-41 8.9E-46 360.3 41.1 423 2-432 80-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.5E-37 1.5E-41 327.6 37.1 405 4-414 115-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-27 1E-31 237.7 36.4 362 48-416 9-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-26 9.4E-31 230.6 40.0 349 76-431 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.7E-32 245.8 22.7 183 164-347 27-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.4E-26 4.8E-31 237.5 21.4 200 180-380 7-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 9.3E-23 3.2E-27 208.9 33.7 316 103-427 28-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 2.3E-23 7.8E-28 217.1 28.8 388 38-432 6-479 (514)
9 2gw1_A Mitochondrial precursor 99.9 7.2E-23 2.5E-27 213.4 29.8 395 7-408 7-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.5E-22 5E-27 212.4 29.6 415 7-432 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 9.3E-22 3.2E-26 201.5 32.7 356 39-420 27-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.6E-20 8.8E-25 195.2 28.5 394 2-402 55-497 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.5E-19 1.2E-23 176.0 34.5 302 101-431 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.4E-19 8.1E-24 177.2 31.7 307 69-415 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 2.3E-18 8E-23 168.0 30.0 284 131-418 21-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 3.8E-19 1.3E-23 174.2 22.5 282 53-361 17-308 (449)
17 1fch_A Peroxisomal targeting s 99.8 1E-18 3.4E-23 173.7 23.1 293 114-427 38-355 (368)
18 3hym_B Cell division cycle pro 99.8 1.1E-17 3.6E-22 163.3 29.8 265 161-431 20-299 (330)
19 2xm6_A Protein corresponding t 99.8 8.3E-17 2.8E-21 166.6 36.6 365 35-414 36-452 (490)
20 2ooe_A Cleavage stimulation fa 99.8 8.1E-17 2.8E-21 168.4 33.9 213 215-432 255-493 (530)
21 2xm6_A Protein corresponding t 99.8 4.9E-16 1.7E-20 160.8 37.8 351 67-433 36-434 (490)
22 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.3E-23 170.5 17.1 301 82-413 15-339 (449)
23 4eqf_A PEX5-related protein; a 99.8 5.8E-18 2E-22 168.1 20.4 260 163-427 65-352 (365)
24 1xi4_A Clathrin heavy chain; a 99.8 1.3E-15 4.5E-20 165.6 39.3 374 9-423 988-1376(1630)
25 4g1t_A Interferon-induced prot 99.8 5.8E-17 2E-21 166.9 27.7 357 70-442 51-470 (472)
26 2ooe_A Cleavage stimulation fa 99.8 5.7E-16 1.9E-20 162.0 35.5 391 3-400 10-496 (530)
27 1fch_A Peroxisomal targeting s 99.8 2.8E-17 9.5E-22 163.2 24.2 289 80-393 35-356 (368)
28 3mkr_A Coatomer subunit epsilo 99.8 2.6E-16 9E-21 150.5 29.5 267 144-425 11-288 (291)
29 1xi4_A Clathrin heavy chain; a 99.8 3.7E-15 1.3E-19 162.1 39.1 349 37-426 984-1340(1630)
30 4eqf_A PEX5-related protein; a 99.8 4.7E-17 1.6E-21 161.5 22.0 263 100-392 64-352 (365)
31 3cv0_A Peroxisome targeting si 99.7 1.2E-16 4E-21 155.7 22.8 270 135-428 24-312 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 4.8E-16 1.6E-20 148.7 22.8 248 170-433 6-266 (291)
33 3cv0_A Peroxisome targeting si 99.7 2.2E-16 7.6E-21 153.7 20.4 270 100-396 20-315 (327)
34 4g1t_A Interferon-induced prot 99.7 2.2E-15 7.5E-20 155.0 27.4 356 38-409 51-471 (472)
35 2pl2_A Hypothetical conserved 99.7 7.4E-15 2.5E-19 134.0 20.1 195 230-428 2-211 (217)
36 3uq3_A Heat shock protein STI1 99.6 1.7E-14 5.7E-19 135.1 21.8 219 164-431 6-236 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.6 2.3E-16 8E-21 166.4 9.9 131 230-361 124-262 (1134)
38 3uq3_A Heat shock protein STI1 99.6 9.7E-15 3.3E-19 136.7 18.8 234 132-409 5-254 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 2.1E-16 7.3E-21 166.7 7.3 146 133-278 128-286 (1134)
40 3u4t_A TPR repeat-containing p 99.6 4E-14 1.4E-18 133.9 22.0 242 168-416 8-269 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 4E-14 1.4E-18 134.0 20.2 240 176-425 18-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.4E-14 8.4E-19 145.9 19.4 218 200-430 178-420 (452)
43 2pl2_A Hypothetical conserved 99.6 2.4E-13 8.3E-18 123.9 19.9 192 164-361 6-211 (217)
44 2h6f_A Protein farnesyltransfe 99.6 2.6E-13 8.7E-18 134.3 21.3 245 163-413 97-364 (382)
45 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-13 5.6E-18 127.1 18.0 173 235-411 59-236 (243)
46 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-13 5.5E-18 139.9 19.5 338 76-433 9-389 (452)
47 1ouv_A Conserved hypothetical 99.5 4.1E-12 1.4E-16 120.2 27.9 223 162-432 5-252 (273)
48 2ho1_A Type 4 fimbrial biogene 99.5 7.1E-13 2.4E-17 123.7 21.7 197 233-432 37-239 (252)
49 1ouv_A Conserved hypothetical 99.5 3.7E-12 1.2E-16 120.6 26.8 192 232-433 5-217 (273)
50 2ho1_A Type 4 fimbrial biogene 99.5 1.1E-12 3.7E-17 122.4 22.4 202 163-402 37-244 (252)
51 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-13 8.6E-18 125.8 17.7 198 231-432 21-223 (243)
52 2vq2_A PILW, putative fimbrial 99.5 9E-13 3.1E-17 120.4 21.1 195 233-430 8-210 (225)
53 3u4t_A TPR repeat-containing p 99.5 1.3E-12 4.3E-17 123.5 22.6 228 200-432 5-251 (272)
54 2vq2_A PILW, putative fimbrial 99.5 2.2E-12 7.5E-17 117.7 22.3 203 162-402 7-217 (225)
55 3sf4_A G-protein-signaling mod 99.5 4.1E-13 1.4E-17 134.7 18.8 264 165-430 11-335 (406)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.1E-13 1.7E-17 126.3 18.1 233 82-322 17-269 (275)
57 3sf4_A G-protein-signaling mod 99.5 2E-13 6.9E-18 137.0 14.0 286 103-420 11-365 (406)
58 3ro2_A PINS homolog, G-protein 99.5 5.7E-13 2E-17 129.6 16.8 261 169-431 11-332 (338)
59 4a1s_A PINS, partner of inscut 99.5 3.6E-13 1.2E-17 135.6 15.8 260 169-430 54-371 (411)
60 2h6f_A Protein farnesyltransfe 99.5 1.5E-12 5.2E-17 128.7 19.8 227 199-431 98-348 (382)
61 3vtx_A MAMA; tetratricopeptide 99.5 3.9E-12 1.3E-16 112.5 19.9 166 263-432 4-171 (184)
62 4abn_A Tetratricopeptide repea 99.5 5E-13 1.7E-17 137.1 16.2 209 214-428 84-318 (474)
63 4e6h_A MRNA 3'-END-processing 99.5 1.4E-10 4.8E-15 122.4 33.6 402 2-412 62-584 (679)
64 2ond_A Cleavage stimulation fa 99.4 5.4E-11 1.8E-15 114.7 26.2 219 180-402 33-276 (308)
65 3ro2_A PINS homolog, G-protein 99.4 2.9E-12 9.9E-17 124.6 15.9 264 105-399 9-335 (338)
66 4a1s_A PINS, partner of inscut 99.4 1.4E-12 4.7E-17 131.3 13.7 265 104-399 51-375 (411)
67 2ond_A Cleavage stimulation fa 99.4 5.3E-11 1.8E-15 114.8 23.6 210 149-361 33-267 (308)
68 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 3.9E-16 109.4 17.4 168 231-401 3-175 (184)
69 3ulq_A Response regulator aspa 99.4 8E-12 2.7E-16 124.6 17.5 221 208-430 113-367 (383)
70 3ulq_A Response regulator aspa 99.4 9.6E-12 3.3E-16 124.0 17.8 229 169-397 109-369 (383)
71 4e6h_A MRNA 3'-END-processing 99.4 1.3E-09 4.3E-14 115.1 32.4 395 36-433 64-572 (679)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.1E-17 124.8 9.9 236 163-430 27-306 (311)
73 4gyw_A UDP-N-acetylglucosamine 99.3 2.2E-11 7.5E-16 130.0 18.1 163 264-430 9-173 (723)
74 1hz4_A MALT regulatory protein 99.3 8.8E-10 3E-14 109.2 28.4 262 169-430 20-321 (373)
75 3nf1_A KLC 1, kinesin light ch 99.3 4.3E-12 1.5E-16 122.1 11.2 237 132-399 27-310 (311)
76 3as5_A MAMA; tetratricopeptide 99.3 5.8E-11 2E-15 104.4 16.8 157 270-430 14-172 (186)
77 4i17_A Hypothetical protein; T 99.3 7.1E-11 2.4E-15 108.3 17.7 186 233-430 7-208 (228)
78 3q15_A PSP28, response regulat 99.3 1.8E-10 6E-15 114.6 20.2 221 208-430 111-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.3 2.8E-10 9.5E-15 100.0 18.8 166 234-402 9-179 (186)
80 4i17_A Hypothetical protein; T 99.3 2.2E-10 7.6E-15 105.0 18.4 205 196-412 5-224 (228)
81 4abn_A Tetratricopeptide repea 99.3 1.6E-10 5.3E-15 118.5 18.6 188 199-390 103-315 (474)
82 3q15_A PSP28, response regulat 99.2 1E-09 3.5E-14 109.1 22.7 227 169-396 107-365 (378)
83 1qqe_A Vesicular transport pro 99.2 7.3E-10 2.5E-14 105.8 17.6 201 213-429 32-267 (292)
84 1hz4_A MALT regulatory protein 99.2 3.3E-09 1.1E-13 105.1 22.8 233 166-398 56-324 (373)
85 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.4E-15 108.3 12.7 196 234-430 44-280 (283)
86 3qky_A Outer membrane assembly 99.1 3.6E-09 1.2E-13 99.1 20.5 207 231-477 13-247 (261)
87 4gyw_A UDP-N-acetylglucosamine 99.1 4.3E-10 1.5E-14 120.1 14.3 164 232-398 8-176 (723)
88 3mv2_B Coatomer subunit epsilo 99.1 5.5E-08 1.9E-12 91.3 25.2 159 266-430 102-281 (310)
89 1qqe_A Vesicular transport pro 99.1 2.3E-09 7.8E-14 102.3 16.3 167 235-401 79-274 (292)
90 3qky_A Outer membrane assembly 99.0 6E-09 2E-13 97.6 17.1 203 196-420 13-250 (261)
91 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.1E-08 7.3E-13 91.5 19.8 184 234-434 5-216 (225)
92 3mv2_B Coatomer subunit epsilo 99.0 4.4E-08 1.5E-12 92.0 21.9 237 144-402 25-288 (310)
93 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.6E-13 84.3 15.7 128 266-429 3-130 (136)
94 2pzi_A Probable serine/threoni 99.0 2.4E-09 8.2E-14 114.8 14.6 169 244-417 402-583 (681)
95 2fo7_A Synthetic consensus TPR 99.0 7E-09 2.4E-13 85.4 14.3 95 337-432 3-99 (136)
96 3edt_B KLC 2, kinesin light ch 99.0 5.6E-09 1.9E-13 98.4 15.4 162 235-396 87-281 (283)
97 3qou_A Protein YBBN; thioredox 99.0 1.8E-08 6.2E-13 95.7 17.9 176 249-429 102-282 (287)
98 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-09 4.4E-14 92.5 6.5 137 276-417 9-149 (150)
99 3rjv_A Putative SEL1 repeat pr 98.9 6.7E-08 2.3E-12 87.2 17.9 172 252-433 5-199 (212)
100 2uy1_A Cleavage stimulation fa 98.9 3.3E-07 1.1E-11 93.7 24.9 46 181-227 197-242 (493)
101 2pzi_A Probable serine/threoni 98.9 7.5E-08 2.6E-12 103.1 20.4 189 209-402 402-608 (681)
102 3urz_A Uncharacterized protein 98.9 3.7E-08 1.3E-12 88.6 15.1 128 270-401 60-191 (208)
103 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.2E-13 87.2 13.4 63 366-429 107-171 (176)
104 4ga2_A E3 SUMO-protein ligase 98.9 6.9E-09 2.4E-13 88.0 9.6 122 305-430 3-128 (150)
105 2ifu_A Gamma-SNAP; membrane fu 98.8 8.7E-08 3E-12 92.0 17.3 219 176-423 4-253 (307)
106 2vsy_A XCC0866; transferase, g 98.8 3.3E-08 1.1E-12 103.8 15.6 160 246-409 2-169 (568)
107 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.7E-13 85.9 9.8 97 334-431 20-118 (148)
108 2vsy_A XCC0866; transferase, g 98.8 6.9E-08 2.4E-12 101.4 17.0 147 211-361 2-154 (568)
109 3urz_A Uncharacterized protein 98.8 1.3E-07 4.4E-12 85.0 16.0 186 165-375 6-198 (208)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.6E-07 5.6E-12 85.5 16.7 184 198-402 4-219 (225)
111 2r5s_A Uncharacterized protein 98.8 8.5E-08 2.9E-12 83.6 13.9 158 234-395 7-172 (176)
112 3dra_A Protein farnesyltransfe 98.8 4.7E-06 1.6E-10 78.9 26.1 219 178-402 48-294 (306)
113 3gyz_A Chaperone protein IPGC; 98.8 3.4E-08 1.2E-12 83.5 10.2 101 331-432 31-134 (151)
114 3dra_A Protein farnesyltransfe 98.8 1.6E-06 5.4E-11 82.2 22.3 213 213-430 48-286 (306)
115 3qou_A Protein YBBN; thioredox 98.7 3.2E-07 1.1E-11 87.0 17.5 157 201-359 120-279 (287)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.9E-07 2.4E-11 80.3 18.6 145 237-401 10-155 (213)
117 2xcb_A PCRH, regulatory protei 98.7 1.2E-07 4E-12 79.4 12.1 97 335-432 18-116 (142)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.5E-07 1.2E-11 82.3 16.1 126 302-433 9-152 (213)
119 3rjv_A Putative SEL1 repeat pr 98.7 9.5E-07 3.2E-11 79.5 18.5 169 151-328 5-197 (212)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 3.8E-07 1.3E-11 86.8 16.3 164 265-429 76-264 (293)
121 4gco_A Protein STI-1; structur 98.7 9.9E-08 3.4E-12 78.0 10.3 94 336-430 14-109 (126)
122 4gco_A Protein STI-1; structur 98.7 2E-07 6.8E-12 76.2 12.1 114 295-411 8-124 (126)
123 3u3w_A Transcriptional activat 98.7 1.9E-06 6.6E-11 81.9 20.8 160 270-430 81-265 (293)
124 2c2l_A CHIP, carboxy terminus 98.7 8E-08 2.7E-12 90.9 10.8 191 233-431 4-199 (281)
125 1a17_A Serine/threonine protei 98.7 3.7E-07 1.3E-11 78.2 13.9 126 301-429 15-144 (166)
126 1na0_A Designed protein CTPR3; 98.6 4.3E-07 1.5E-11 73.3 13.0 114 300-416 10-125 (125)
127 2e2e_A Formate-dependent nitri 98.6 4E-07 1.4E-11 79.3 12.8 119 311-432 22-145 (177)
128 2vyi_A SGTA protein; chaperone 98.6 4.6E-07 1.6E-11 73.8 12.4 116 300-418 13-130 (131)
129 2lni_A Stress-induced-phosphop 98.6 4.4E-07 1.5E-11 74.4 11.5 115 300-417 17-133 (133)
130 3u3w_A Transcriptional activat 98.6 5.6E-06 1.9E-10 78.6 20.8 157 239-395 81-265 (293)
131 2ifu_A Gamma-SNAP; membrane fu 98.5 6.8E-07 2.3E-11 85.7 13.5 198 210-429 3-222 (307)
132 1p5q_A FKBP52, FK506-binding p 98.5 6.5E-07 2.2E-11 87.0 13.2 94 335-429 196-292 (336)
133 4f3v_A ESX-1 secretion system 98.5 1.9E-07 6.4E-12 86.5 8.4 135 268-408 106-247 (282)
134 2uy1_A Cleavage stimulation fa 98.5 8E-05 2.7E-09 76.1 28.8 350 8-395 17-412 (493)
135 2qfc_A PLCR protein; TPR, HTH, 98.5 4.5E-06 1.5E-10 79.3 17.8 161 235-395 77-265 (293)
136 3upv_A Heat shock protein STI1 98.5 6.3E-07 2.2E-11 73.0 10.2 97 335-432 4-102 (126)
137 2kck_A TPR repeat; tetratricop 98.5 7E-07 2.4E-11 70.5 10.0 99 334-433 5-108 (112)
138 4f3v_A ESX-1 secretion system 98.5 3E-06 1E-10 78.5 15.0 182 245-432 18-238 (282)
139 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.5E-11 77.6 12.2 116 245-360 4-132 (203)
140 1hxi_A PEX5, peroxisome target 98.5 6.5E-07 2.2E-11 72.5 9.1 95 337-432 19-115 (121)
141 3gw4_A Uncharacterized protein 98.5 3.3E-06 1.1E-10 74.9 14.7 155 275-430 3-175 (203)
142 3q7a_A Farnesyltransferase alp 98.5 8.7E-05 3E-09 71.1 25.0 173 173-350 64-257 (349)
143 2e2e_A Formate-dependent nitri 98.4 1.8E-06 6.3E-11 75.0 12.3 125 275-402 21-150 (177)
144 1elw_A TPR1-domain of HOP; HOP 98.4 3.7E-06 1.2E-10 66.9 12.9 108 301-411 6-115 (118)
145 3q49_B STIP1 homology and U bo 98.4 1.8E-06 6.1E-11 71.3 11.2 99 333-432 7-107 (137)
146 2vgx_A Chaperone SYCD; alterna 98.4 5.6E-07 1.9E-11 75.8 8.2 101 300-402 22-124 (148)
147 3sz7_A HSC70 cochaperone (SGT) 98.4 3.1E-06 1E-10 72.6 13.0 95 335-430 11-107 (164)
148 2fbn_A 70 kDa peptidylprolyl i 98.4 2.2E-06 7.5E-11 76.1 12.3 168 242-431 13-186 (198)
149 3gyz_A Chaperone protein IPGC; 98.4 4.6E-06 1.6E-10 70.3 13.3 104 296-401 32-138 (151)
150 1a17_A Serine/threonine protei 98.4 4.9E-06 1.7E-10 71.1 13.7 128 265-395 14-145 (166)
151 3dss_A Geranylgeranyl transfer 98.4 7.1E-05 2.4E-09 71.3 22.3 229 175-411 41-318 (331)
152 1elw_A TPR1-domain of HOP; HOP 98.4 2.9E-06 1E-10 67.5 10.7 98 334-432 3-102 (118)
153 2lni_A Stress-induced-phosphop 98.4 2.6E-06 8.9E-11 69.6 10.5 99 332-431 13-113 (133)
154 1na0_A Designed protein CTPR3; 98.4 3.2E-06 1.1E-10 68.0 10.9 97 335-432 9-107 (125)
155 2xcb_A PCRH, regulatory protei 98.3 2.8E-06 9.7E-11 70.8 10.7 100 301-402 20-121 (142)
156 2c2l_A CHIP, carboxy terminus 98.3 1.5E-06 5.1E-11 82.1 10.0 188 163-361 4-196 (281)
157 3q7a_A Farnesyltransferase alp 98.3 4.7E-05 1.6E-09 72.9 20.0 214 212-430 68-330 (349)
158 2dba_A Smooth muscle cell asso 98.3 9.7E-06 3.3E-10 67.6 13.6 109 300-412 29-143 (148)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 5.5E-06 1.9E-10 71.0 12.2 109 299-410 11-121 (164)
160 3upv_A Heat shock protein STI1 98.3 4.1E-06 1.4E-10 68.1 10.8 108 301-411 6-121 (126)
161 2xev_A YBGF; tetratricopeptide 98.3 2.3E-06 8E-11 69.7 9.2 91 340-431 7-105 (129)
162 2dba_A Smooth muscle cell asso 98.3 4.8E-06 1.6E-10 69.5 11.3 98 333-431 26-128 (148)
163 3q49_B STIP1 homology and U bo 98.3 7.9E-06 2.7E-10 67.3 11.2 100 298-399 8-109 (137)
164 4gcn_A Protein STI-1; structur 98.2 4.3E-06 1.5E-10 68.2 9.3 95 336-430 9-111 (127)
165 2vyi_A SGTA protein; chaperone 98.2 2E-05 6.7E-10 63.9 13.3 114 266-382 14-129 (131)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.3E-05 4.4E-10 81.4 14.7 95 335-430 317-414 (457)
167 3rkv_A Putative peptidylprolyl 98.2 7.7E-06 2.6E-10 69.9 11.1 64 367-431 63-126 (162)
168 4b4t_Q 26S proteasome regulato 98.2 1.2E-05 4E-10 81.0 13.9 163 267-429 58-243 (434)
169 1wao_1 Serine/threonine protei 98.2 1.1E-05 3.6E-10 82.4 13.6 117 240-359 13-134 (477)
170 2hr2_A Hypothetical protein; a 98.2 4.5E-06 1.5E-10 69.8 8.4 62 368-430 58-130 (159)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.9E-10 65.3 11.0 92 338-430 7-107 (131)
172 3dss_A Geranylgeranyl transfer 98.2 0.00034 1.2E-08 66.6 22.2 216 211-431 42-304 (331)
173 1wao_1 Serine/threonine protei 98.2 4.6E-06 1.6E-10 85.0 9.9 116 308-426 15-134 (477)
174 2kck_A TPR repeat; tetratricop 98.2 1.1E-05 3.9E-10 63.3 10.2 99 301-401 8-111 (112)
175 1elr_A TPR2A-domain of HOP; HO 98.2 1.8E-05 6.2E-10 64.1 11.8 108 302-413 7-123 (131)
176 1p5q_A FKBP52, FK506-binding p 98.2 2.6E-05 8.8E-10 75.6 14.5 131 263-395 146-293 (336)
177 2fbn_A 70 kDa peptidylprolyl i 98.2 4.2E-06 1.4E-10 74.2 8.0 146 206-355 12-176 (198)
178 1hxi_A PEX5, peroxisome target 98.1 1.5E-05 5E-10 64.3 9.9 97 303-401 21-119 (121)
179 3k9i_A BH0479 protein; putativ 98.1 1.9E-06 6.6E-11 69.1 4.3 82 348-430 3-89 (117)
180 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4.1E-10 68.0 9.5 93 337-430 51-157 (164)
181 2xev_A YBGF; tetratricopeptide 98.1 3.5E-05 1.2E-09 62.5 11.8 96 305-402 8-111 (129)
182 4gcn_A Protein STI-1; structur 98.1 3.1E-05 1.1E-09 63.0 11.4 105 266-399 10-115 (127)
183 3n71_A Histone lysine methyltr 98.1 4.1E-05 1.4E-09 77.6 13.8 125 308-432 318-465 (490)
184 3ro3_A PINS homolog, G-protein 98.0 2E-05 6.7E-10 66.6 9.7 96 301-396 51-158 (164)
185 1ihg_A Cyclophilin 40; ppiase 98.0 3.5E-05 1.2E-09 75.7 12.3 138 265-424 224-363 (370)
186 4b4t_Q 26S proteasome regulato 98.0 0.00013 4.5E-09 73.2 16.8 207 170-395 11-244 (434)
187 3rkv_A Putative peptidylprolyl 98.0 2.2E-05 7.6E-10 66.9 9.3 78 335-412 63-142 (162)
188 2if4_A ATFKBP42; FKBP-like, al 98.0 1.4E-05 4.8E-10 77.5 8.9 148 264-432 179-329 (338)
189 2l6j_A TPR repeat-containing p 98.0 3.9E-06 1.3E-10 66.2 3.9 92 334-426 3-102 (111)
190 3k9i_A BH0479 protein; putativ 98.0 8.1E-06 2.8E-10 65.3 5.2 90 312-402 3-96 (117)
191 1dce_A Protein (RAB geranylger 97.9 0.00048 1.6E-08 71.5 19.7 169 248-420 44-244 (567)
192 2hr2_A Hypothetical protein; a 97.9 2E-05 6.8E-10 65.9 7.2 66 337-402 59-137 (159)
193 2if4_A ATFKBP42; FKBP-like, al 97.9 2.7E-05 9.2E-10 75.5 8.9 153 233-402 179-334 (338)
194 3ma5_A Tetratricopeptide repea 97.9 4.8E-05 1.6E-09 58.8 8.3 66 365-431 5-70 (100)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.9E-09 73.6 13.7 95 337-432 270-381 (457)
196 1na3_A Designed protein CTPR2; 97.8 5.7E-05 1.9E-09 56.8 8.1 81 335-416 9-91 (91)
197 2kat_A Uncharacterized protein 97.7 6.2E-05 2.1E-09 59.8 6.9 76 354-430 4-81 (115)
198 3n71_A Histone lysine methyltr 97.7 7.6E-05 2.6E-09 75.7 8.2 116 344-477 318-450 (490)
199 1zu2_A Mitochondrial import re 97.7 4.3E-05 1.5E-09 63.7 5.0 86 347-433 14-122 (158)
200 3bee_A Putative YFRE protein; 97.6 0.00038 1.3E-08 52.7 9.7 70 364-434 3-75 (93)
201 1ihg_A Cyclophilin 40; ppiase 97.6 0.00034 1.2E-08 68.5 12.1 117 236-355 226-361 (370)
202 3qwp_A SET and MYND domain-con 97.6 0.00017 6E-09 71.9 9.7 117 342-476 294-427 (429)
203 2l6j_A TPR repeat-containing p 97.5 0.00023 7.8E-09 55.7 7.4 67 365-432 2-68 (111)
204 1zu2_A Mitochondrial import re 97.5 0.00015 5E-09 60.5 5.5 72 352-431 63-147 (158)
205 1dce_A Protein (RAB geranylger 97.4 0.0041 1.4E-07 64.5 16.8 149 278-431 43-221 (567)
206 1klx_A Cysteine rich protein B 97.4 0.0015 5.1E-08 53.7 10.7 87 343-432 33-127 (138)
207 3mkq_A Coatomer beta'-subunit; 97.4 0.016 5.3E-07 63.2 22.0 154 78-258 607-761 (814)
208 3qww_A SET and MYND domain-con 97.3 0.00016 5.6E-09 72.0 5.4 83 348-430 311-410 (433)
209 1klx_A Cysteine rich protein B 97.3 0.0011 3.8E-08 54.5 9.5 112 278-398 9-128 (138)
210 2kat_A Uncharacterized protein 97.3 0.00087 3E-08 52.9 8.4 81 318-400 4-86 (115)
211 1na3_A Designed protein CTPR2; 97.3 0.00058 2E-08 51.0 6.9 64 367-431 9-72 (91)
212 1pc2_A Mitochondria fission pr 97.1 0.0021 7.1E-08 52.9 9.0 90 365-481 30-124 (152)
213 3qww_A SET and MYND domain-con 97.1 0.0021 7.3E-08 63.9 10.8 92 311-402 310-422 (433)
214 3qwp_A SET and MYND domain-con 97.1 0.0035 1.2E-07 62.5 12.1 97 306-402 294-411 (429)
215 3ly7_A Transcriptional activat 97.1 0.015 5.1E-07 55.6 15.6 138 261-400 191-343 (372)
216 3ma5_A Tetratricopeptide repea 97.0 0.0028 9.7E-08 48.5 8.7 61 265-326 8-68 (100)
217 3mkq_A Coatomer beta'-subunit; 97.0 0.025 8.5E-07 61.6 19.0 42 143-186 610-652 (814)
218 2kc7_A BFR218_protein; tetratr 96.9 0.0036 1.2E-07 47.5 8.5 79 341-428 6-87 (99)
219 1wy6_A Hypothetical protein ST 96.5 0.22 7.5E-06 39.4 16.3 140 275-434 18-157 (172)
220 2kc7_A BFR218_protein; tetratr 96.5 0.003 1E-07 48.1 4.8 56 271-327 7-63 (99)
221 3ly7_A Transcriptional activat 96.4 0.028 9.5E-07 53.8 12.0 134 295-433 190-341 (372)
222 3mkq_B Coatomer subunit alpha; 96.3 0.29 1E-05 41.2 16.1 104 140-260 13-116 (177)
223 2v5f_A Prolyl 4-hydroxylase su 96.3 0.021 7.3E-07 43.9 8.8 73 335-408 5-86 (104)
224 3mkq_B Coatomer subunit alpha; 96.2 0.17 5.9E-06 42.6 14.4 130 240-393 12-141 (177)
225 1nzn_A CGI-135 protein, fissio 96.2 0.021 7.1E-07 45.1 8.0 65 365-430 33-102 (126)
226 3lvg_A Clathrin heavy chain 1; 96.2 0.0007 2.4E-08 66.1 -0.6 395 6-424 54-534 (624)
227 3lvg_A Clathrin heavy chain 1; 96.1 0.00013 4.4E-09 71.1 -5.7 236 37-285 53-325 (624)
228 3bee_A Putative YFRE protein; 95.9 0.059 2E-06 40.4 9.5 70 332-401 3-77 (93)
229 1y8m_A FIS1; mitochondria, unk 95.9 0.25 8.6E-06 39.7 13.2 92 364-481 36-130 (144)
230 3u64_A Protein TP_0956; tetrat 95.8 0.028 9.5E-07 51.5 8.4 87 351-438 179-276 (301)
231 1pc2_A Mitochondria fission pr 95.7 0.028 9.5E-07 46.2 7.2 70 333-402 30-106 (152)
232 1qsa_A Protein (soluble lytic 95.0 3.9 0.00013 42.3 30.1 114 278-395 228-347 (618)
233 3ltj_A Alpharep-4; protein eng 94.9 1.7 5.8E-05 37.5 18.5 144 66-213 24-167 (201)
234 3ltm_A Alpha-REP4; protein eng 94.8 1.8 6.3E-05 37.6 19.0 143 67-213 30-172 (211)
235 3ltj_A Alpharep-4; protein eng 94.6 1.7 5.7E-05 37.6 16.0 184 24-212 14-197 (201)
236 2v5f_A Prolyl 4-hydroxylase su 94.1 0.15 5.3E-06 38.9 7.2 66 365-431 3-75 (104)
237 3o48_A Mitochondria fission 1 93.8 0.4 1.4E-05 38.0 8.8 66 365-430 38-106 (134)
238 3u64_A Protein TP_0956; tetrat 93.7 0.19 6.7E-06 46.0 8.0 82 316-400 180-273 (301)
239 4h7y_A Dual specificity protei 93.5 0.51 1.7E-05 38.3 9.1 54 348-402 73-129 (161)
240 4gns_B Protein CSD3, chitin bi 93.2 0.8 2.7E-05 48.4 12.9 55 374-429 344-398 (754)
241 3ltm_A Alpha-REP4; protein eng 93.2 3.8 0.00013 35.5 18.2 159 30-190 25-183 (211)
242 1nzn_A CGI-135 protein, fissio 93.1 0.85 2.9E-05 35.9 9.8 70 333-402 33-109 (126)
243 1wy6_A Hypothetical protein ST 92.5 3.3 0.00011 32.9 12.7 139 174-331 18-156 (172)
244 4h7y_A Dual specificity protei 91.2 1 3.5E-05 36.6 8.2 55 379-434 72-126 (161)
245 4ady_A RPN2, 26S proteasome re 89.9 16 0.00053 39.7 18.3 50 210-260 536-587 (963)
246 4ady_A RPN2, 26S proteasome re 88.8 13 0.00044 40.3 16.7 249 110-369 383-663 (963)
247 2uwj_G Type III export protein 88.7 5.8 0.0002 29.3 9.6 61 139-202 46-106 (115)
248 3txn_A 26S proteasome regulato 88.4 15 0.0005 35.6 15.6 25 200-224 21-45 (394)
249 2p58_C Putative type III secre 88.4 6.2 0.00021 29.3 9.9 59 140-201 48-106 (116)
250 3ffl_A Anaphase-promoting comp 88.1 3 0.0001 34.5 8.9 115 235-363 22-150 (167)
251 4b4t_P 26S proteasome regulato 87.6 15 0.00051 36.3 15.6 184 177-361 30-244 (445)
252 1v54_E Cytochrome C oxidase po 87.3 2.8 9.5E-05 31.2 7.3 62 280-343 26-87 (109)
253 4gns_B Protein CSD3, chitin bi 86.5 8.3 0.00029 40.8 13.5 125 237-363 252-399 (754)
254 2uwj_G Type III export protein 85.9 8.8 0.0003 28.4 9.9 88 212-304 20-107 (115)
255 3lpz_A GET4 (YOR164C homolog); 85.8 23 0.00079 33.1 20.1 167 236-430 38-215 (336)
256 2p58_C Putative type III secre 85.5 9.4 0.00032 28.3 10.5 88 212-304 21-108 (116)
257 2ff4_A Probable regulatory pro 85.2 1.8 6.2E-05 42.1 7.4 67 370-437 174-245 (388)
258 2ff4_A Probable regulatory pro 83.8 7.7 0.00026 37.6 11.2 68 269-337 176-247 (388)
259 4fhn_B Nucleoporin NUP120; pro 81.4 24 0.00081 39.8 15.5 164 136-317 816-989 (1139)
260 4b4t_P 26S proteasome regulato 81.4 43 0.0015 32.9 22.2 174 146-321 30-240 (445)
261 2y69_E Cytochrome C oxidase su 81.1 6.4 0.00022 31.1 7.3 60 282-343 71-130 (152)
262 1y8m_A FIS1; mitochondria, unk 81.0 20 0.00068 28.7 10.7 70 333-402 37-112 (144)
263 3ffl_A Anaphase-promoting comp 80.6 13 0.00044 30.7 9.5 35 131-165 121-157 (167)
264 3txn_A 26S proteasome regulato 79.0 48 0.0016 31.9 20.1 88 332-433 253-345 (394)
265 1v54_E Cytochrome C oxidase po 78.5 8.6 0.00029 28.7 6.9 47 181-227 28-74 (109)
266 3lpz_A GET4 (YOR164C homolog); 78.3 44 0.0015 31.2 22.7 181 110-327 21-215 (336)
267 4fhn_B Nucleoporin NUP120; pro 77.7 43 0.0015 37.7 16.0 60 302-361 902-964 (1139)
268 2wpv_A GET4, UPF0363 protein Y 77.6 45 0.0015 30.9 19.5 168 236-430 36-216 (312)
269 2wpv_A GET4, UPF0363 protein Y 77.3 46 0.0016 30.8 22.5 183 109-328 21-217 (312)
270 1oyz_A Hypothetical protein YI 75.8 45 0.0015 30.0 21.0 17 262-278 204-220 (280)
271 1zbp_A Hypothetical protein VP 70.0 63 0.0021 29.1 12.3 53 274-327 7-59 (273)
272 3mv2_A Coatomer subunit alpha; 68.2 63 0.0022 29.9 11.7 60 358-432 196-257 (325)
273 1zbp_A Hypothetical protein VP 67.3 16 0.00053 33.0 7.3 113 307-431 5-129 (273)
274 2qx5_A Nucleoporin NIC96; mRNA 66.3 43 0.0015 34.8 11.5 37 76-112 158-197 (661)
275 2y69_E Cytochrome C oxidase su 65.5 22 0.00077 28.1 6.9 46 182-227 72-117 (152)
276 4b4t_R RPN7, 26S proteasome re 64.6 9.8 0.00034 37.4 6.2 95 301-395 133-236 (429)
277 1wdy_A 2-5A-dependent ribonucl 64.5 77 0.0026 28.1 12.6 16 242-257 225-240 (285)
278 4b4t_R RPN7, 26S proteasome re 64.1 57 0.0019 31.9 11.7 96 266-361 133-234 (429)
279 3esl_A Checkpoint serine/threo 63.1 71 0.0024 27.3 12.7 103 352-481 61-169 (202)
280 3o48_A Mitochondria fission 1 62.6 55 0.0019 25.8 10.8 34 369-402 80-113 (134)
281 4a1g_A Mitotic checkpoint seri 51.4 92 0.0031 25.2 8.7 76 352-434 52-133 (152)
282 2l0z_A Glycoprotein G2; zinc-b 51.2 5.1 0.00017 23.7 0.8 10 561-570 20-29 (42)
283 1qsa_A Protein (soluble lytic 51.1 2.2E+02 0.0076 29.2 34.6 238 178-434 229-482 (618)
284 2pk8_A Uncharacterized protein 49.8 13 0.00045 26.8 2.9 47 459-513 13-59 (103)
285 3bqo_A Telomeric repeat-bindin 48.4 1E+02 0.0035 26.1 8.6 64 351-415 94-164 (211)
286 4b4t_S RPN3, 26S proteasome re 47.1 2.3E+02 0.0079 28.3 13.5 178 233-434 231-432 (523)
287 2nsz_A Programmed cell death p 44.9 1E+02 0.0035 24.0 8.0 62 236-297 10-76 (129)
288 2wvi_A Mitotic checkpoint seri 44.6 1.2E+02 0.0041 24.9 8.5 76 352-434 47-128 (164)
289 2nsz_A Programmed cell death p 43.3 41 0.0014 26.4 5.4 69 41-110 10-83 (129)
290 3eiq_C Programmed cell death p 42.0 2.3E+02 0.0078 26.7 15.8 65 236-300 220-289 (358)
291 1wdy_A 2-5A-dependent ribonucl 41.6 1.8E+02 0.0062 25.5 13.1 208 10-222 6-240 (285)
292 2d2s_A Exocyst complex compone 40.4 1.1E+02 0.0037 26.9 8.2 88 270-361 24-117 (235)
293 2d2s_A Exocyst complex compone 39.5 1.2E+02 0.0042 26.6 8.4 23 169-191 24-46 (235)
294 1oyz_A Hypothetical protein YI 39.3 2E+02 0.007 25.4 23.4 18 231-248 140-157 (280)
295 4b4t_S RPN3, 26S proteasome re 38.1 95 0.0033 31.0 8.2 61 301-361 233-296 (523)
296 2k0q_A Putative uncharacterize 37.2 12 0.00042 25.3 1.1 22 547-568 8-29 (74)
297 4gq2_M Nucleoporin NUP120; bet 36.8 3.1E+02 0.011 30.0 12.9 85 305-395 816-925 (950)
298 3ljn_A Hypothetical protein; a 36.2 1.4E+02 0.0049 27.7 9.3 14 347-360 253-266 (364)
299 2ion_A PDCD4, programmed cell 35.7 35 0.0012 27.7 4.0 27 41-68 12-38 (152)
300 2ion_A PDCD4, programmed cell 35.4 99 0.0034 25.0 6.6 61 236-296 12-77 (152)
301 3mkr_B Coatomer subunit alpha; 33.9 1.4E+02 0.0047 27.6 7.9 61 358-433 187-249 (320)
302 2r9g_A AAA ATPase, central reg 32.0 2.4E+02 0.0081 24.0 8.7 63 166-229 14-84 (204)
303 3kea_A K1L; tropism, ANK repea 29.5 3E+02 0.01 24.4 11.1 109 49-159 39-153 (285)
304 3eu9_A Huntingtin-interacting 29.4 2.5E+02 0.0087 23.6 9.2 10 53-62 20-29 (240)
305 3bge_A Predicted ATPase; struc 28.7 2.2E+02 0.0075 24.1 7.6 47 166-212 7-56 (201)
306 3eu9_A Huntingtin-interacting 28.1 2.7E+02 0.0092 23.4 10.4 15 17-32 17-31 (240)
307 3ygs_P Procaspase 9; apoptosis 27.9 86 0.0029 23.0 4.7 37 247-283 51-87 (97)
308 4gq2_M Nucleoporin NUP120; bet 27.4 6.3E+02 0.022 27.5 14.2 108 138-247 816-950 (950)
309 1bpo_A Protein (clathrin); cla 27.3 4.5E+02 0.016 25.8 11.6 128 226-363 354-484 (494)
310 2fe3_A Peroxide operon regulat 27.1 1.7E+02 0.0058 23.2 6.8 63 288-352 11-73 (145)
311 2qx5_A Nucleoporin NIC96; mRNA 25.5 5.8E+02 0.02 26.4 17.0 81 106-189 299-382 (661)
312 1n11_A Ankyrin; clathrin, BAND 25.3 4.4E+02 0.015 25.0 12.8 345 75-436 16-371 (437)
313 3ctd_A Putative ATPase, AAA fa 25.2 2.6E+02 0.0089 23.9 7.5 68 162-229 31-106 (213)
314 3esl_A Checkpoint serine/threo 24.7 3.2E+02 0.011 23.2 10.2 55 177-231 93-148 (202)
315 3ygs_P Procaspase 9; apoptosis 24.7 83 0.0028 23.1 4.0 38 146-183 51-88 (97)
316 2xig_A Ferric uptake regulatio 23.1 2.5E+02 0.0085 22.4 7.1 62 289-352 17-78 (150)
317 4ets_A Ferric uptake regulatio 22.0 2E+02 0.0069 23.4 6.4 71 281-352 14-86 (162)
318 3eiq_C Programmed cell death p 21.7 5.1E+02 0.017 24.3 13.7 61 267-328 220-282 (358)
319 3kea_A K1L; tropism, ANK repea 21.6 3.3E+02 0.011 24.2 8.6 89 341-435 132-221 (285)
320 2rfa_A Transient receptor pote 21.5 3.5E+02 0.012 22.8 8.5 22 208-229 161-182 (232)
321 1te4_A Conserved protein MTH18 21.2 2.7E+02 0.0094 21.1 7.4 19 67-85 53-71 (131)
322 3hra_A Ankyrin repeat family p 20.0 3.6E+02 0.012 21.9 9.4 179 139-323 9-199 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-41 Score=360.30 Aligned_cols=423 Identities=12% Similarity=0.024 Sum_probs=380.3
Q ss_pred CCCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCCHHHHHHHHhhC--CCCChhhHHHHH
Q 008280 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWNTMI 77 (571)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m--~~~d~~~~~~li 77 (571)
|.+++..++.++..|.+.| ++++|.++|+++.. ||..+++.++..|.+. |++++|+.+|+++ ..+|+.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp --CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCCCchHHHHHHHHHHHc-CcHHHHHHHHHHHhccccchhHHHHHH
Confidence 4467888999999999999 99999999999964 8889999999999999 9999999999999 568999999999
Q ss_pred HHHHcCCCHHHHHHHHhhCCCC-------------------CcchHHHHHHHHHHcCChHHHHHHHhhCCCC---ChhHH
Q 008280 78 SGFVQKKNMAKARDLFLAMPEK-------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVK---SVVAW 135 (571)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~-------------------d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 135 (571)
.+|.+.|++++|+++|+++... +..+|+.++.+|.+.|++++|+++|+++... +...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999965433 4789999999999999999999999988632 23333
Q ss_pred HH--------------------------------------HHHHHHhcCCHHHHHHHHhhCCC--CCHHHHHHHHHHHHH
Q 008280 136 TA--------------------------------------MISGYMKFGKVDLAEKLFDEMPT--KNLVTWNAMIAGYVE 175 (571)
Q Consensus 136 ~~--------------------------------------li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 175 (571)
.. ++.+|.+.|++++|.++|+++.+ +|..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 32 35567788999999999999987 899999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 008280 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255 (571)
Q Consensus 176 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 255 (571)
.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999865 4477889999999999999999999999998764 66788999999999999999999999
Q ss_pred HHhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCC
Q 008280 256 FLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332 (571)
Q Consensus 256 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 332 (571)
|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 99875 3568899999999999999999999999998864 447789999999999999999999999999874 35
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCch
Q 008280 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403 (571)
Q Consensus 333 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 403 (571)
.++.+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|+..++++++.+|+++.
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN- 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH-
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-
Confidence 57889999999999999999999999988 45677 789999999999999999999999999999999988
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
+|..++.+|.+.|++++|.+.++++.+..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-37 Score=327.58 Aligned_cols=405 Identities=9% Similarity=0.007 Sum_probs=358.9
Q ss_pred CCcchHHHHHHHHHhCCCCHHHHHHHHhhCC--CCChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCC-------------
Q 008280 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK------------- 68 (571)
Q Consensus 4 ~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~------------- 68 (571)
|+..++..++.+|.+.| ++++|.++|+++. .+++.+|+.++.+|.+. |++++|+++|+++...
T Consensus 115 p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCLVKL-YDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT-TCHHHHHHHHCSSCTTC----------CC
T ss_pred CCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHHHHH-hhHHHHHHHHhccCCcccccccccccccc
Confidence 56688899999999999 9999999999994 48899999999999999 9999999999965443
Q ss_pred ------ChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CC-cchHHHH--------------------------------
Q 008280 69 ------DTASWNTMISGFVQKKNMAKARDLFLAMPE--KN-SVSWSAM-------------------------------- 107 (571)
Q Consensus 69 ------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d-~~~~~~l-------------------------------- 107 (571)
+..+|+.++.+|.+.|++++|+++|++|.+ |+ ...+..+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 488999999999999999999999999964 32 2333322
Q ss_pred ------HHHHHHcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHc
Q 008280 108 ------ISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVEN 176 (571)
Q Consensus 108 ------i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 176 (571)
+..|.+.|++++|+++|+++.. +++.+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.+|.+.
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 4556678999999999999986 7889999999999999999999999999863 4678999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 008280 177 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 256 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 256 (571)
|++++|+.+|+++.+.. +.+..++..+...+.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998653 5578899999999999999999999999998864 556789999999999999999999999
Q ss_pred HhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc---C
Q 008280 257 LEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY---G 330 (571)
Q Consensus 257 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~ 330 (571)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 431 TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 98763 478899999999999999999999999998864 4478899999999999999999999999997642 4
Q ss_pred CCCC--hHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHH
Q 008280 331 IAAK--PDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406 (571)
Q Consensus 331 ~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 406 (571)
..|+ ..+|..++.+|.+.|++++|.+.|+++ .. +.+..+|..+..+|...|++++|...++++++++|+++. .+.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~ 588 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM-ASD 588 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH-HHH
Confidence 5677 789999999999999999999999987 22 247899999999999999999999999999999999988 999
Q ss_pred HHHHHHhh
Q 008280 407 QLANIYAA 414 (571)
Q Consensus 407 ~l~~~~~~ 414 (571)
.|+.+|..
T Consensus 589 ~l~~~~~~ 596 (597)
T 2xpi_A 589 LLKRALEE 596 (597)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99888753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.9e-27 Score=237.67 Aligned_cols=362 Identities=15% Similarity=0.105 Sum_probs=263.0
Q ss_pred HHcCCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHH
Q 008280 48 ILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAV 121 (571)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~ 121 (571)
+.+. |++++|++.++++. +.+...+..+...+.+.|++++|...++...+ .+..+|..+..+|.+.|++++|+
T Consensus 9 ~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQA-GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444 66666666665543 22344555555666666666666666655432 34556777777777777777777
Q ss_pred HHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 008280 122 ELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT--K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIR 195 (571)
Q Consensus 122 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 195 (571)
+.|+++. +.+..++..+...|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.... +
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 7776553 33445667777777777777777777766653 3 34466667777777777777777777777642 2
Q ss_pred CCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC---CCChhhHHHHHH
Q 008280 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMIS 272 (571)
Q Consensus 196 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 272 (571)
.+..++..+...+...|++++|...++.+++.. +.+...+..+...+...|++++|...|++.. ..+..+|..+..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 345667777777777777777777777777764 4456677778888888888888888888664 235678888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 008280 273 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 352 (571)
.|...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+...+.+.|+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 8888899999999888888753 224667888888888889999999998888763 4566788888888888999999
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 353 EAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 353 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
+|.+.++++ ...| +..++..+...+...|++++|...++++++.+|+.+. +|..++.++...|
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHhHHHHHHHcc
Confidence 999888887 3334 4678888888889999999999999999999998887 8888888877665
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-26 Score=230.56 Aligned_cols=349 Identities=14% Similarity=0.100 Sum_probs=304.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHH
Q 008280 76 MISGFVQKKNMAKARDLFLAMPE--K-NSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVD 149 (571)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 149 (571)
+...+.+.|++++|++.|+.+.+ | +...+..+...+.+.|++++|...++... +.+..++..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 35567789999999999988743 4 45677778888999999999999997664 556789999999999999999
Q ss_pred HHHHHHhhCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchHHHHHHHHHHH
Q 008280 150 LAEKLFDEMPT--K-NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQLGKQVHQLVF 225 (571)
Q Consensus 150 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 225 (571)
+|...|+++.+ | +..+|..++.++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|...+..++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998863 3 5568999999999999999999999999875 454 4456677778889999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008280 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302 (571)
Q Consensus 226 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 302 (571)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 55678899999999999999999999998763 456789999999999999999999999998753 2356788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhc
Q 008280 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVH 380 (571)
Q Consensus 303 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 380 (571)
..+..++...|++++|...|+++.+. .+.++..|..++..|.+.|++++|.+.|+++ ..+++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 89999999999999999999999863 3445788999999999999999999999988 2235678999999999999
Q ss_pred CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 381 g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
|++++|+..++++++..|+++. ++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHH-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999988 9999999999999999999999998863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-27 Score=245.78 Aligned_cols=183 Identities=12% Similarity=0.166 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC---------chHHHHHHHHHHHhCCCCCCcc
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS---------SLQLGKQVHQLVFKSPLCKDTT 234 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~g~~~~~~ 234 (571)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3577788888888888888888888888888888888888888887654 3677888888888888888888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQ----RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 310 (571)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888886 36888888888888888888888888888888888888888888888888
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 347 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 347 (571)
+.|++++|.+++++|.+. +..|+..+|+.++..+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888775 888888888888887765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.4e-26 Score=237.50 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC---------H
Q 008280 180 EDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD---------L 249 (571)
Q Consensus 180 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 249 (571)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455667778777766544 46888999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHhhC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 008280 250 EDACKLFLEIQ----RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 325 (571)
Q Consensus 250 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 325 (571)
+.|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999997 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhc
Q 008280 326 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVH 380 (571)
Q Consensus 326 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 380 (571)
.+. |+.||..+|++|+.+|++.|++++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 886 99999999999999999999999999999999 7889999999999988754
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=9.3e-23 Score=208.89 Aligned_cols=316 Identities=12% Similarity=0.095 Sum_probs=219.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHc
Q 008280 103 SWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVEN 176 (571)
Q Consensus 103 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 176 (571)
+|..+...+.+.|++++|+.+|+++. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|.+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 33334444444444444444443332 22334444444444444444444444444332 2344555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----hHHHHH------------HHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHH
Q 008280 177 SWAEDGLKLLRMMIGLGIRPNA----SSLSSV------------LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g~~pd~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 240 (571)
|++++|+..|+++... .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..++..++
T Consensus 108 g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 5555555555555543 2222 222222 334666788888888888877764 55677888899
Q ss_pred HHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH-----------
Q 008280 241 SMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVAL----------- 305 (571)
Q Consensus 241 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l----------- 305 (571)
.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998763 57889999999999999999999999999875 344 3334333
Q ss_pred -HHHHHhcCcHHHHHHHHHHhHHhcCCCCC-----hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 008280 306 -LLACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC 377 (571)
Q Consensus 306 -l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 377 (571)
..+|.+.|++++|..+|+.+.+. .|+ ..++..++.++.+.|++++|++.++++ ...| +..+|..+..+|
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 78899999999999999999874 344 457889999999999999999999987 3334 678999999999
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHH------------HHHhhcc-----ChhHHHHHHHH
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA------------NIYAAMK-----KWDDVARIRLS 427 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 427 (571)
...|++++|...++++++++|+++. .+..++ +.|...| +.+++.+.+++
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQ-IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHH-HHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHH-HHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999988 888888 4466666 45556666665
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.3e-23 Score=217.12 Aligned_cols=388 Identities=10% Similarity=-0.011 Sum_probs=311.7
Q ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHhhCC--CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 008280 38 VVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYI 112 (571)
Q Consensus 38 ~~~~~~ll~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~ 112 (571)
...|..+...+.+. |++++|+..|+++. .||..+|..+..+|.+.|++++|+..|+++.+ .+..+|..+..+|.
T Consensus 6 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRN-KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 34566777788899 99999999999886 37899999999999999999999999998753 35678999999999
Q ss_pred HcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 008280 113 ECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLF---------------------------------- 155 (571)
Q Consensus 113 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~---------------------------------- 155 (571)
..|++++|+..|+++. +.+......++..+.+......+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999998774 223333334444333322222222211
Q ss_pred ----hhCC---------CC-CHHHHHHHHHHHHH---cCChhHHHHHHHHHHH-----CCCCC--------CHhHHHHHH
Q 008280 156 ----DEMP---------TK-NLVTWNAMIAGYVE---NSWAEDGLKLLRMMIG-----LGIRP--------NASSLSSVL 205 (571)
Q Consensus 156 ----~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------d~~t~~~ll 205 (571)
.... .+ +...+......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 1110 01 14455555555554 8999999999999987 32122 345677788
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHH
Q 008280 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEK 282 (571)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 282 (571)
..+...|++++|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999987633 88889999999999999999999998764 367789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-
Q 008280 283 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM- 361 (571)
Q Consensus 283 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 361 (571)
|+..|++..... +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998864 335668888999999999999999999999874 3446788999999999999999999999887
Q ss_pred ---CCCCC----HhHHHHHHHHHHh---cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 362 ---PFKPQ----PAIFGTLLSACRV---HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 362 ---~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
|..++ ...|..+...+.. .|++++|...++++++.+|+++. ++..++.+|.+.|++++|.+.+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ-AKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22233 4489999999999 99999999999999999999988 9999999999999999999999998874
Q ss_pred C
Q 008280 432 N 432 (571)
Q Consensus 432 ~ 432 (571)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.2e-23 Score=213.36 Aligned_cols=395 Identities=12% Similarity=0.022 Sum_probs=316.0
Q ss_pred chHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCCHHHHHHHHhhCC---CCChhhHHHHHHHHH
Q 008280 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFV 81 (571)
Q Consensus 7 ~~~~~l~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~ 81 (571)
..+..+...|.+.| ++++|.+.|+++.+ ||...|..+..+|.+. |++++|++.|+++. +.+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 45667788889999 99999999998875 8999999999999999 99999999999865 356778999999999
Q ss_pred cCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHH----------------------------------
Q 008280 82 QKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELF---------------------------------- 124 (571)
Q Consensus 82 ~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~---------------------------------- 124 (571)
+.|++++|+..|+++.+ ++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999998743 23344444444433322222222211
Q ss_pred ----hhCC----------CCChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-CHHHHHHHH
Q 008280 125 ----KVAP----------VKSVVAWTAMISGYMK---FGKVDLAEKLFDEMPT----------------K-NLVTWNAMI 170 (571)
Q Consensus 125 ----~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 170 (571)
.... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 1110 1124445555555554 8999999999988654 1 345788999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 008280 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250 (571)
Q Consensus 171 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 250 (571)
..+...|++++|+..|+++.... |+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998864 447788888999999999999999999999875 556788999999999999999
Q ss_pred HHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 251 DACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 251 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
+|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998753 467889999999999999999999999998753 33567888899999999999999999999876
Q ss_pred hcCCCCC----hHhHHHHHHHHHH---cCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC
Q 008280 328 DYGIAAK----PDHYTCMVDLLGR---AGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 328 ~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 398 (571)
...-.++ ...+..+...|.+ .|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 4222222 3488999999999 99999999999887 22 24578889999999999999999999999999999
Q ss_pred CCCchhHHHH
Q 008280 399 ANAAGCYVQL 408 (571)
Q Consensus 399 ~~~~~~~~~l 408 (571)
+++. .+..+
T Consensus 481 ~~~~-~~~~~ 489 (514)
T 2gw1_A 481 TMEE-KLQAI 489 (514)
T ss_dssp SHHH-HHHHH
T ss_pred ccHH-HHHHH
Confidence 9876 55544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.5e-22 Score=212.35 Aligned_cols=415 Identities=12% Similarity=0.076 Sum_probs=311.0
Q ss_pred chHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCC---CCChhhHHHHHHHH
Q 008280 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGF 80 (571)
Q Consensus 7 ~~~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~ 80 (571)
..+..+...|.+.| ++++|.+.|+++.+ .++..|..+...|.+. |++++|++.|+++. +.+..++..+..+|
T Consensus 26 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 44566777777888 88888888887754 4567777888888888 88888888888764 34567788888888
Q ss_pred HcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCCHHHHHHH
Q 008280 81 VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS------VVAWTAMISGYMKFGKVDLAEKL 154 (571)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 154 (571)
.+.|++++|+..|+.+. .++......+..+...+...+|...++.+.... .......+..|....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 88888888888886442 222222333445555566677888777765321 12234455556677777777777
Q ss_pred HhhCCCCCHH---HHHHHHHHHHH--------cCChhHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHHhccCchH
Q 008280 155 FDEMPTKNLV---TWNAMIAGYVE--------NSWAEDGLKLLRMMIGLGIRPN-A-------SSLSSVLLGCSHLSSLQ 215 (571)
Q Consensus 155 ~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~~~~~~~~~~ 215 (571)
+......+.. .+..+...+.. .|++++|+.+|+++.+. .|+ . .++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 7776654432 33344333322 25789999999999875 344 2 24556666778889999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008280 216 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKD 292 (571)
Q Consensus 216 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 292 (571)
+|...+..+.+.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|++...
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999875 4478888999999999999999999998763 4678899999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCC----
Q 008280 293 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFK---- 364 (571)
Q Consensus 293 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~---- 364 (571)
.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ |..
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 64 234567888999999999999999999999874 3455778999999999999999999999886 111
Q ss_pred CCHhHHHHHHHHHHhc----------CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 365 PQPAIFGTLLSACRVH----------KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
.....+..+...+... |++++|+..++++++.+|+++. ++..++.+|.+.|++++|.+.+++..+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ-AKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1223355556677777 9999999999999999999988 99999999999999999999999987644
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.3e-22 Score=201.46 Aligned_cols=356 Identities=10% Similarity=0.009 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHcCCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 008280 39 VSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYI 112 (571)
Q Consensus 39 ~~~~~ll~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~ 112 (571)
..|..+...+.+. |++++|+.+|+++. ..+..+|..+..+|.+.|++++|+..|+++.+ .+..++..+...|.
T Consensus 27 ~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAA-GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4455555555555 56666665555543 23445555555555555555555555555432 23444555555555
Q ss_pred HcCChHHHHHHHhhCCCCC---h---hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 008280 113 ECGQLDKAVELFKVAPVKS---V---VAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 113 ~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
+.|++++|++.|+++...+ . ..+..++..+... .+..+...+.+.|++++|+..|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555443221 1 3333332220000 0111233355566666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CC
Q 008280 187 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KD 263 (571)
Q Consensus 187 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 263 (571)
+++.... +.+...+..+...+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|+++.+ .+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 6655532 2344555555556666666666666666655543 34455666666666666666666666665542 23
Q ss_pred hhhHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 008280 264 VVTWNAM------------ISGYAQHGKGEKALRLFDKMKDEGMKPD-----SITFVALLLACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 264 ~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 326 (571)
...+..+ +..+...|++++|+..|+++... .|+ ...+..+..++.+.|++++|...++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333 67777778888888888877764 333 2356667777777888888888887776
Q ss_pred HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH------------HHhcC-----CHhHHH
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSA------------CRVHK-----RLDLAE 387 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~~~a~ 387 (571)
+. .+.+...|..+..+|...|++++|.+.|+++ ...|+ ...+..+..+ |...| +.+++.
T Consensus 323 ~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 323 QM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 53 2335677777888888888888888887776 33444 4455555422 22333 567778
Q ss_pred HHHHH-HhccCCCCCc---------hhHHHHHHHHhhccChhH
Q 008280 388 FAAMN-LFNLNPANAA---------GCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 388 ~~~~~-~~~~~p~~~~---------~~~~~l~~~~~~~g~~~~ 420 (571)
+.+++ .++..|+... ..+..+..+|...|+.+.
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 88886 6777777532 134455555555555444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.6e-20 Score=195.23 Aligned_cols=394 Identities=13% Similarity=0.018 Sum_probs=307.1
Q ss_pred CCCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHH
Q 008280 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78 (571)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~ 78 (571)
.|.++.++..+..+|.+.| ++++|.+.|+++.+ .+...|..+...+... |++++|++.|+.+ ..++...+..+.
T Consensus 55 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~-~~~~~~~~~~~~ 131 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANESL-GNFTDAMFDLSVL-SLNGDFDGASIE 131 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHH-C-----------
T ss_pred CCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHH-hcCCCCChHHHH
Confidence 3567788999999999999 99999999998864 4567888888899999 9999999999744 333333344455
Q ss_pred HHHcCCCHHHHHHHHhhCCCC------CcchHHHHHHHHHHcCChHHHHHHHhhCCCCChh---HHHHHHHHHHhc----
Q 008280 79 GFVQKKNMAKARDLFLAMPEK------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV---AWTAMISGYMKF---- 145 (571)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~---- 145 (571)
.+...+...+|...++.+... ........+..+....+.+.+...+......+.. ....+...+...
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 666667778999999888542 2223455566677788888888877777655543 455555544433
Q ss_pred ----CCHHHHHHHHhhCCC--CC--------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 008280 146 ----GKVDLAEKLFDEMPT--KN--------LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211 (571)
Q Consensus 146 ----g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 211 (571)
|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|+++... .|+...+..+...+...
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh
Confidence 478999999998875 32 235777788899999999999999999885 56678888899999999
Q ss_pred CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
|+++.|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|+
T Consensus 290 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998875 55678899999999999999999999998763 467889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHc----------CCHHHH
Q 008280 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRA----------GKLVEA 354 (571)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~----------g~~~~A 354 (571)
++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+. ...+..+...|.+. |++++|
T Consensus 369 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 369 ETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 998864 335668888999999999999999999998764211111 22344556778888 999999
Q ss_pred HHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 355 VDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 355 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
...|+++ ... .+..+|..+...+...|++++|...+++++++.|+.+.
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999987 222 45788999999999999999999999999999998765
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.5e-19 Score=175.97 Aligned_cols=302 Identities=12% Similarity=0.093 Sum_probs=203.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHH
Q 008280 101 SVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYV 174 (571)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 174 (571)
+..+..+...+...|++++|+..|+++. +.++.++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 3455666666777777777777766553 33455666666666677777777766666542 24456666666666
Q ss_pred HcCChhHHHHHHHHHHHCCCCC---C-HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 008280 175 ENSWAEDGLKLLRMMIGLGIRP---N-ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250 (571)
Q Consensus 175 ~~g~~~~A~~~~~~m~~~g~~p---d-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 250 (571)
..|++++|+..|+++.+. .| + ...+..+... .. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777666653 23 1 1122111100 00 001222356777778888
Q ss_pred HHHHHHHhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 251 DACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 251 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
+|...|+++. ..+...|..+...+...|++++|+..+++..... +.+..++..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888877764 2456677777788888888888888888877653 33566777777778888888888888877775
Q ss_pred hcCCCCChHhHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----hHHHHHHHHHHhcCCHhHHHHH
Q 008280 328 DYGIAAKPDHYT------------CMVDLLGRAGKLVEAVDLIKKM-PFKPQ-P----AIFGTLLSACRVHKRLDLAEFA 389 (571)
Q Consensus 328 ~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~ 389 (571)
. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3 122233222 3366788889999999988876 22233 2 2355577788899999999999
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 390 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 390 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
++++++.+|+++. ++..++.+|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVN-ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999998888 8999999999999999999999888764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.4e-19 Score=177.17 Aligned_cols=307 Identities=13% Similarity=0.091 Sum_probs=224.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHH
Q 008280 69 DTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGY 142 (571)
Q Consensus 69 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 142 (571)
|+..+..+...+.+.|++++|+..|+++.+ .+..++..+...+...|++++|+..++++. +.+...+..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456788899999999999999999998853 457789999999999999999999998775 45668899999999
Q ss_pred HhcCCHHHHHHHHhhCCC--C----CHHHHHHH------------HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008280 143 MKFGKVDLAEKLFDEMPT--K----NLVTWNAM------------IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 204 (571)
Q Consensus 143 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 204 (571)
.+.|++++|...|++..+ | +...+..+ ...+...|++++|+..|+++.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------- 148 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------------- 148 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence 999999999999999865 3 23344444 3444555555555555555444
Q ss_pred HHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChH
Q 008280 205 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGE 281 (571)
Q Consensus 205 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 281 (571)
.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|+++
T Consensus 149 ----------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 149 ----------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp ----------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred ----------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 32 23344455556666666666666666665543 24556666666677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHH------------HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCCh----HhHHHHHHHH
Q 008280 282 KALRLFDKMKDEGMKPDSITF------------VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHYTCMVDLL 345 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~------------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~ 345 (571)
+|...|++..+.. +.+...+ ..+...+...|++++|...++.+.+.. +.+. ..+..+...|
T Consensus 206 ~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 206 LSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH
Confidence 7777777666542 1122222 233566888899999999999888642 2222 3355678889
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhc
Q 008280 346 GRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 415 (571)
.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++. .+..|..++...
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ-IREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHH
Confidence 9999999999999887 2233 6789999999999999999999999999999999987 777777776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.3e-18 Score=168.01 Aligned_cols=284 Identities=10% Similarity=0.012 Sum_probs=199.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008280 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207 (571)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 207 (571)
++..+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444455555555556666666666655542 233455556666666666666666666666542 2244555666666
Q ss_pred HhccC-chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHH
Q 008280 208 CSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKA 283 (571)
Q Consensus 208 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 283 (571)
+...| ++++|...++.+.+.. +.+...+..+..+|...|++++|...|++..+ .+...|..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 6666777776666654 44556677777777788888888887777652 3456677788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC-------CCCChHhHHHHHHHHHHcCCHHHHHH
Q 008280 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG-------IAAKPDHYTCMVDLLGRAGKLVEAVD 356 (571)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~ 356 (571)
...|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887653 33566777788888888888888888887765321 13346788888899999999999999
Q ss_pred HHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH-hhccCh
Q 008280 357 LIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY-AAMKKW 418 (571)
Q Consensus 357 ~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~ 418 (571)
.+++. .. +.+...|..+...+...|++++|...++++++++|+++. .+..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF-SVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH-HHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH-HHHHHHHHHHHHhCch
Confidence 88876 11 235678888999999999999999999999999999887 888888888 455554
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=3.8e-19 Score=174.15 Aligned_cols=282 Identities=13% Similarity=0.147 Sum_probs=108.6
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCC--C
Q 008280 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--K 130 (571)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 130 (571)
|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++ +
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~ 92 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 55666666666664443 6666666666666666666666443 4455666666666666666666665554432 2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 008280 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 210 (571)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 210 (571)
++.+.+.|+.+|.++|+++++.++++. |+..+|+.++..|...|++++|...|.++ ..|..+..++.+
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp ----------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence 345566666666666666666655542 45556666666666666666666666654 256666666666
Q ss_pred cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008280 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 290 (571)
Q Consensus 211 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 290 (571)
.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|..+++..
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666666655 245666666666777777777766555543 33333445777777777888887777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHh--cCcHHHHHHHHHHhHHhcCCCC------ChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 291 KDEGMKPDSITFVALLLACNH--AGLVDLGIQYFDSMVNDYGIAA------KPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 291 ~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
.... +-....|+.+.-++++ .+++.+..+.|. .+-+++| +..+|.-++-.|...++++.|...+-+-
T Consensus 234 L~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 5432 2233345555444443 334444444443 2224454 4667888888899999999888776655
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1e-18 Score=173.68 Aligned_cols=293 Identities=12% Similarity=0.014 Sum_probs=181.1
Q ss_pred cCChHHHHH-HHhhCCC---C----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHH
Q 008280 114 CGQLDKAVE-LFKVAPV---K----SVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDG 182 (571)
Q Consensus 114 ~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 182 (571)
.|++++|++ .|++... . +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5543321 1 123344555555555555555555555432 2334555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 008280 183 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 262 (571)
Q Consensus 183 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 262 (571)
+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+... .. ...
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~~~- 180 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------GAG- 180 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------hhc-
Confidence 55555554432 2233444444444444455555555444444432 1111111100000 00 000
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 341 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 341 (571)
....+..+...+ ..|++++|+..|+++....... +..++..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l 257 (368)
T 1fch_A 181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKL 257 (368)
T ss_dssp -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 000111233333 8899999999999998754221 4778888999999999999999999998864 34457889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC-----------CchhHHHH
Q 008280 342 VDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN-----------AAGCYVQL 408 (571)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~~l 408 (571)
...|.+.|++++|++.|+++ ... .+..+|..+...|...|++++|...+++++++.|++ .. +|..+
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~l 336 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN-IWSTL 336 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH-HHHHH
Confidence 99999999999999999887 222 457889999999999999999999999999988877 56 89999
Q ss_pred HHHHhhccChhHHHHHHHH
Q 008280 409 ANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~ 427 (571)
+.+|...|++++|..++++
T Consensus 337 ~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHhCChHhHHHhHHH
Confidence 9999999999999998763
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-17 Score=163.32 Aligned_cols=265 Identities=14% Similarity=0.065 Sum_probs=230.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHH
Q 008280 161 KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 240 (571)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 240 (571)
.++..+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677888999999999999999999998764 3455667777888899999999999999999875 56788899999
Q ss_pred HHHHhcC-CHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 008280 241 SMYCKCG-DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316 (571)
Q Consensus 241 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 316 (571)
..|...| ++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999998864 234566777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----C-------CCCCHhHHHHHHHHHHhcCCHhH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----P-------FKPQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-------~~p~~~~~~~l~~~~~~~g~~~~ 385 (571)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.++++ + ...+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999986 33556788999999999999999999999877 1 12335789999999999999999
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
|+..++++++..|+++. ++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSH-HHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchH-HHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999988 9999999999999999999999977653
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=8.3e-17 Score=166.58 Aligned_cols=365 Identities=11% Similarity=0.018 Sum_probs=302.5
Q ss_pred CCChhhHHHHHHHHHc----CCCCHHHHHHHHhhCCC-CChhhHHHHHHHHHc----CCCHHHHHHHHhhCCC-CCcchH
Q 008280 35 QPDVVSYNIMLSCILL----NSDDVVAAFDFFQRLPI-KDTASWNTMISGFVQ----KKNMAKARDLFLAMPE-KNSVSW 104 (571)
Q Consensus 35 ~~~~~~~~~ll~~~~~----~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~ 104 (571)
..++..+..|-..|.. . +++++|+..|++..+ .++..+..|...|.. .+++++|++.|++..+ .++..+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3577777888878877 6 999999999987643 577888899999998 8999999999998754 467788
Q ss_pred HHHHHHHHH----cCChHHHHHHHhhCC-CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCHHHHHHHHHHHH
Q 008280 105 SAMISGYIE----CGQLDKAVELFKVAP-VKSVVAWTAMISGYMK----FGKVDLAEKLFDEMPT-KNLVTWNAMIAGYV 174 (571)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 174 (571)
..|...|.. .+++++|++.|++.. ..++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 888888988 889999999998775 3466788889999988 8899999999988764 57788999999999
Q ss_pred H----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-
Q 008280 175 E----NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK- 245 (571)
Q Consensus 175 ~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~- 245 (571)
. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.| +...+..|..+|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 8 899999999999998865 55666677766664 789999999999998875 45677788888888
Q ss_pred ---cCCHHHHHHHHHhhCC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 008280 246 ---CGDLEDACKLFLEIQR-KDVVTWNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG--- 313 (571)
Q Consensus 246 ---~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--- 313 (571)
.++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 8999999999998765 4677888888888887 89999999999998865 4566777777777756
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHhH
Q 008280 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDL 385 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 385 (571)
+.++|.++|++..+. .++..+..|..+|.. .+++++|.+.|++.-...++..+..|...|.. .++.++
T Consensus 346 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 889999999998863 467888899999998 89999999999987333467888889998888 899999
Q ss_pred HHHHHHHHhccCCC---CCchhHHHHHHHHhh
Q 008280 386 AEFAAMNLFNLNPA---NAAGCYVQLANIYAA 414 (571)
Q Consensus 386 a~~~~~~~~~~~p~---~~~~~~~~l~~~~~~ 414 (571)
|...|+++.+.+|+ ++. ....|+.++..
T Consensus 422 A~~~~~~A~~~~~~~~~~~~-a~~~l~~~~~~ 452 (490)
T 2xm6_A 422 AWAWFDTASTNDMNLFGTEN-RNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHCCHHHHHH-HHHHHTTSCHH
T ss_pred HHHHHHHHHHCCCCCcCCHH-HHHHHHhcCHh
Confidence 99999999998854 555 66667666553
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=8.1e-17 Score=168.40 Aligned_cols=213 Identities=7% Similarity=0.028 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHhhCC---C-ChhhHHHHHHHHHH
Q 008280 215 QLGKQVHQLVFKSPLCKDTTALTPLISMYCK-------CGDLE-------DACKLFLEIQR---K-DVVTWNAMISGYAQ 276 (571)
Q Consensus 215 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 276 (571)
+.+..+|++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36677788877763 5567788888888775 68876 88888887763 2 56788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH-HHHcCCHHH
Q 008280 277 HGKGEKALRLFDKMKDEGMKPD-S-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL-LGRAGKLVE 353 (571)
Q Consensus 277 ~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 353 (571)
.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|+...+. .+.+...|...+.+ +...|+.++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999999988874 454 2 46777888888888899999999888753 12223333333322 336889999
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC---chhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 354 AVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA---AGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 354 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
|..+|++. ...| ++..|..++..+...|+.++|..+|++++...|.++ ...|...+......|+.+.+.++++++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998876 2223 567888888888888999999999999988765443 225556677777889999998888887
Q ss_pred HhCC
Q 008280 429 KENN 432 (571)
Q Consensus 429 ~~~~ 432 (571)
.+.-
T Consensus 490 ~~~~ 493 (530)
T 2ooe_A 490 FTAF 493 (530)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 6543
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=4.9e-16 Score=160.75 Aligned_cols=351 Identities=17% Similarity=0.059 Sum_probs=298.6
Q ss_pred CCChhhHHHHHHHHHc----CCCHHHHHHHHhhCCC-CCcchHHHHHHHHHH----cCChHHHHHHHhhCC-CCChhHHH
Q 008280 67 IKDTASWNTMISGFVQ----KKNMAKARDLFLAMPE-KNSVSWSAMISGYIE----CGQLDKAVELFKVAP-VKSVVAWT 136 (571)
Q Consensus 67 ~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~ 136 (571)
..|+..+..+...|.. .+++++|+..|++..+ .+..++..|...|.. .+++++|++.|++.. ..++..+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4577888888888888 8999999999998754 577888899999999 999999999998775 34678888
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008280 137 AMISGYMK----FGKVDLAEKLFDEMPT-KNLVTWNAMIAGYVE----NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 207 (571)
Q Consensus 137 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 207 (571)
.|..+|.. .+++++|...|++..+ .++.++..|...|.. .+++++|++.|++..+.| +...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 89999998 8899999999998764 567789999999988 889999999999998865 56777777777
Q ss_pred Hhc----cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhhCC-CChhhHHHHHHHHHH--
Q 008280 208 CSH----LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK----CGDLEDACKLFLEIQR-KDVVTWNAMISGYAQ-- 276 (571)
Q Consensus 208 ~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-- 276 (571)
+.. .++.++|...++...+.| +...+..|..+|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 776 899999999999999876 56678889999987 8999999999998764 467788888888888
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC
Q 008280 277 --HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-----GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349 (571)
Q Consensus 277 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 349 (571)
.++.++|+..|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..|..+|.+.|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLG 342 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCC
Confidence 899999999999998764 556677777888877 8999999999998763 35667888888888867
Q ss_pred ---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh----ccCh
Q 008280 350 ---KLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA----MKKW 418 (571)
Q Consensus 350 ---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~ 418 (571)
++++|++.|++.-...++..+..|...|.. .+++++|...++++.+.+ ++. ++..|+.+|.. .+++
T Consensus 343 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA-AQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-HHHHHHHHHHHTSSSCCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH-HHHHHHHHHHcCCCCCCCH
Confidence 889999999987333578899999999988 899999999999998865 355 89999999998 8999
Q ss_pred hHHHHHHHHHHhCCC
Q 008280 419 DDVARIRLSMKENNV 433 (571)
Q Consensus 419 ~~a~~~~~~m~~~~~ 433 (571)
++|.+.|++..+.+.
T Consensus 420 ~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999988663
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.3e-18 Score=170.48 Aligned_cols=301 Identities=15% Similarity=0.171 Sum_probs=144.3
Q ss_pred cCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 008280 82 QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT- 160 (571)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 160 (571)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|++.++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 668899999999999655 48999999999999999999999764 5667888999999999999999997776654
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHH
Q 008280 161 -KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239 (571)
Q Consensus 161 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 239 (571)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|+.+|..+ ..|..|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 456788899999999999999988885 477789999999999999999999999866 478899
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 319 (571)
++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. +.|+. ...++..|.+.|.++++.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHH
Confidence 99999999999999999988 388999999999999999999966555422 33443 446888899999999999
Q ss_pred HHHHHhHHhcCCCC-ChHhHHHHHHHHHH--cCCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCCHhHHHHH
Q 008280 320 QYFDSMVNDYGIAA-KPDHYTCMVDLLGR--AGKLVEAVDLIKKM-PFKP------QPAIFGTLLSACRVHKRLDLAEFA 389 (571)
Q Consensus 320 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~g~~~~a~~~ 389 (571)
.+++... +.++ ....|+-|.-+|++ -|++.+.++.|..- .++| +...|.-+.-.|...++++.|...
T Consensus 228 ~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 228 TMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9998876 3333 36677777777765 45677777777543 3333 356788888889999999988765
Q ss_pred HHHHhcc------------CCCCCchhHHHHHHHHh
Q 008280 390 AMNLFNL------------NPANAAGCYVQLANIYA 413 (571)
Q Consensus 390 ~~~~~~~------------~p~~~~~~~~~l~~~~~ 413 (571)
.-+-... .|.+.. .|...+..|.
T Consensus 305 m~~h~~~a~~~~~f~~~~~kv~n~e-lyYkai~fyl 339 (449)
T 1b89_A 305 MMNHPTDAWKEGQFKDIITKVANVE-LYYRAIQFYL 339 (449)
T ss_dssp HHHSTTTTCCHHHHHHHHHHCSSTH-HHHHHHHHHH
T ss_pred HHhCChhhhhhHHHHHHHhchhHHH-HHHHHHHHHH
Confidence 4433222 455555 6666666665
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=5.8e-18 Score=168.15 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 242 (571)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..++..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666666666666666666542 3345566666666666666666666666666553 3445666777777
Q ss_pred HHhcCCHHHHHHHHHhhCCCC-------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQRKD-------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITFVALLLA 308 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a 308 (571)
|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++...... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777777665311 223344577888899999999999998876422 157788888999
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHH
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLA 386 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 386 (571)
+...|++++|...|+++.+. .+.+..+|..+..+|.+.|++++|++.|+++ ...| +..+|..+...|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998874 3456888999999999999999999999887 2234 478899999999999999999
Q ss_pred HHHHHHHhccCCC------------CCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 387 EFAAMNLFNLNPA------------NAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 387 ~~~~~~~~~~~p~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
...+++++++.|+ +.. .+..|+.++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGN-IWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CH-HHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHH-HHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999988776 244 889999999999999988877653
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.3e-15 Score=165.58 Aligned_cols=374 Identities=13% Similarity=0.159 Sum_probs=282.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC-CC-----hhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHc
Q 008280 9 WNSVLAGFAKQRGKLKDAQELFDKIPQ-PD-----VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82 (571)
Q Consensus 9 ~~~l~~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~ 82 (571)
-...+++|+..| .+.+|.++++++.- |+ ...-+.|+.+..+. +..+..+...+...-+ ..-+...+..
T Consensus 988 Vs~~vKaf~~ag-lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 988 VSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred hHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 355677888887 88888888887752 22 23445555554444 3344444444443222 3447778888
Q ss_pred CCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 008280 83 KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKN 162 (571)
Q Consensus 83 ~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 162 (571)
.|.+++|..+|++... .....+.++ -..|++++|.++.++. .++.+|..+..++.+.|++++|.+.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 9999999999999742 222223332 2778999999999877 45788999999999999999999999764 67
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 242 (571)
...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 8889999999999999999999998877653 44434445888899998888644442 2 3455667779999
Q ss_pred HHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 322 (571)
|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999985 48999999999999999999999876 36688999999999999999998865
Q ss_pred HHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHh--cCCHhHHHHHHHHHhccCC
Q 008280 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRV--HKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p 398 (571)
.. +..+++.+..++..|.+.|.+++|+.+++.. +..|. ...|.-|...+.+ -++..++.+.|..-....|
T Consensus 1274 l~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 53 3446777889999999999999999999776 43333 3566666666654 4566677777777766655
Q ss_pred -----CCCchhHHHHHHHHhhccChhHHHH
Q 008280 399 -----ANAAGCYVQLANIYAAMKKWDDVAR 423 (571)
Q Consensus 399 -----~~~~~~~~~l~~~~~~~g~~~~a~~ 423 (571)
.+.. .|..+...|.+.|+|+.|..
T Consensus 1348 ~~r~~e~~~-lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1348 VLRAAEQAH-LWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhHHHHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 4555 88999999999999999984
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.8e-17 Score=166.88 Aligned_cols=357 Identities=13% Similarity=0.021 Sum_probs=212.7
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHhhCC-----------CC-CcchHHHHHHHHHHcCChHHHHHHHhhCC---------
Q 008280 70 TASWNTMISGFVQKKNMAKARDLFLAMP-----------EK-NSVSWSAMISGYIECGQLDKAVELFKVAP--------- 128 (571)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~--------- 128 (571)
...||.|...|...|++++|++.|++.. .+ ...+|+.+..+|...|++++|...+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3456666666666666666666665432 11 23466677777777777777776665442
Q ss_pred --CCChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CHHHHHHHHHHH---HHcCChhHHHHHHHHHHHCCCCCCH
Q 008280 129 --VKSVVAWTAMISGYMKF--GKVDLAEKLFDEMPT--K-NLVTWNAMIAGY---VENSWAEDGLKLLRMMIGLGIRPNA 198 (571)
Q Consensus 129 --~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~ 198 (571)
.....++..+..++.+. +++++|...|++..+ | ++..+..+..++ ...++.++|++.|++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 11234555554444443 457788888877653 3 444555554443 34566777888887776643 2344
Q ss_pred hHHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHH
Q 008280 199 SSLSSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMI 271 (571)
Q Consensus 199 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 271 (571)
..+..+...+.. .++.++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 445444444433 356677788887777664 45566777788888888888888888877653 3455666665
Q ss_pred HHHHH-------------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCC
Q 008280 272 SGYAQ-------------------HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 332 (571)
Q Consensus 272 ~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 332 (571)
..|.. .+..++|...|++..... +.+..++..+...+...|++++|...|++..+. .
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 55532 233567888888877653 223456777888899999999999999988763 3
Q ss_pred CChH----hHHHHHHH-HHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHH
Q 008280 333 AKPD----HYTCMVDL-LGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406 (571)
Q Consensus 333 ~~~~----~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 406 (571)
|+.. .+..+... +...|+.++|++.|++. .+.|+...+... ...+..++++.++.+|+++. +|.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~-~~~ 434 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSE-ALH 434 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTT-HHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHH-HHH
Confidence 3322 23333332 34678999999998876 455665433322 34456778888889999998 999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEE
Q 008280 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 442 (571)
Q Consensus 407 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 442 (571)
.|+.+|...|++++|.+.|++..+.+...+...+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999988776544455554
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.7e-16 Score=161.96 Aligned_cols=391 Identities=10% Similarity=0.111 Sum_probs=239.2
Q ss_pred CCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CChhhHHHHH
Q 008280 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMI 77 (571)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li 77 (571)
|-+..+|..++. +.+.| ++++|+.+|+++.+ | +...|..++..+.+. |++++|+++|++... |++..|..++
T Consensus 10 P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 446667777777 35666 88888888887765 3 445677777777777 888888888887653 5666676666
Q ss_pred HHH-HcCCCHHHHHH----HHhhCC-----C-CCcchHHHHHHHHHH---------cCChHHHHHHHhhCCCC-Ch---h
Q 008280 78 SGF-VQKKNMAKARD----LFLAMP-----E-KNSVSWSAMISGYIE---------CGQLDKAVELFKVAPVK-SV---V 133 (571)
Q Consensus 78 ~~~-~~~g~~~~A~~----~~~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~-~~---~ 133 (571)
... ...|+.++|.+ +|+... . ++...|...+....+ .|++++|+.+|++.... .. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 432 34566666554 555432 1 244566666665544 57777888888776532 11 2
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHhh-------CC------CCC--------HHHHHHHHHHHHHc---
Q 008280 134 AWTAMISGY-------------MKFGKVDLAEKLFDE-------MP------TKN--------LVTWNAMIAGYVEN--- 176 (571)
Q Consensus 134 ~~~~li~~~-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~--- 176 (571)
.|....... .+.++++.|..++.. +. .|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 123445666655543 11 111 23555555433332
Q ss_pred -CCh----hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-------cCchH-------HHHHHHHHHHhCCCCCCcchHH
Q 008280 177 -SWA----EDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-------LSSLQ-------LGKQVHQLVFKSPLCKDTTALT 237 (571)
Q Consensus 177 -g~~----~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~ 237 (571)
++. .+++.+|++..... +.+...|......+.+ .|+++ +|..+++.+++.-.+.+..++.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 122 36667777776642 3345566666555553 57765 7777777777632345567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC--C-Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 008280 238 PLISMYCKCGDLEDACKLFLEIQR--K-DV-VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA-CNHA 312 (571)
Q Consensus 238 ~li~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~ 312 (571)
.++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+.. +.+...|...... +...
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 777777777888888888777653 2 22 467777777777777788888887776642 1122223222222 2346
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcCCHhHH
Q 008280 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ--PAIFGTLLSACRVHKRLDLA 386 (571)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a 386 (571)
|+.++|..+|+...+.. +.++..|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77788888887776642 334677777777777778888888777776 22222 34677777777777888888
Q ss_pred HHHHHHHhccCCCC
Q 008280 387 EFAAMNLFNLNPAN 400 (571)
Q Consensus 387 ~~~~~~~~~~~p~~ 400 (571)
..+.+++.+..|++
T Consensus 483 ~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 483 LKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCchh
Confidence 87777777777753
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.8e-17 Score=163.21 Aligned_cols=289 Identities=15% Similarity=0.037 Sum_probs=169.1
Q ss_pred HHcCCCHHHHHH-HHhhCCC--C-----CcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCH
Q 008280 80 FVQKKNMAKARD-LFLAMPE--K-----NSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKV 148 (571)
Q Consensus 80 ~~~~g~~~~A~~-~~~~m~~--~-----d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 148 (571)
+...|++++|+. .|++..+ | +...+..+...+.+.|++++|+..|+++. +.+..++..+...|.+.|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344578888888 7776532 1 35668888888999999999999988764 45667888899999999999
Q ss_pred HHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHHH
Q 008280 149 DLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLLGCSHLSSLQLGKQVHQLV 224 (571)
Q Consensus 149 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 224 (571)
++|...|+++.+ .+..+|..+...|...|++++|+..|+++.... |+.. .+...... .. .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------h
Confidence 999999988753 467899999999999999999999999998864 3322 22111000 00 0
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008280 225 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 299 (571)
Q Consensus 225 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 299 (571)
......+..+...+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.... +.+.
T Consensus 179 -----~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 -----AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred -----hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00000011122222 45555555555555431 1 24455555556666666666666666555432 2234
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCC---------CC
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFK---------PQ 366 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~---------p~ 366 (571)
.++..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|.+.|+++ |.. ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 45555556666666666666666655542 1233555566666666666666666666554 100 11
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 367 PAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
..+|..+..++...|++++|..++++.
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 456666777777777777776666544
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.6e-16 Score=150.52 Aligned_cols=267 Identities=10% Similarity=0.013 Sum_probs=191.1
Q ss_pred hcCCHHHHHHHHhhCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHH
Q 008280 144 KFGKVDLAEKLFDEMPTKNL----VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219 (571)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 219 (571)
..|++..|+..++.....++ .....+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 35566666666555443222 2334455566666666666654433 1 23444555555555666666666666
Q ss_pred HHHHHHhCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008280 220 VHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 298 (571)
Q Consensus 220 ~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 298 (571)
.++.++..+. +.+...+..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+.. |+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence 6666665543 33455666777889999999999999998 5678899999999999999999999999998864 55
Q ss_pred HHHH---HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 008280 299 SITF---VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTL 373 (571)
Q Consensus 299 ~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 373 (571)
.... ...+..+...|++++|..+|+++.+. .+.++..++.+..+|.+.|++++|++.|+++ ...| ++.+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4321 12234444569999999999999985 4667889999999999999999999999987 2234 57789999
Q ss_pred HHHHHhcCCHhH-HHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 374 LSACRVHKRLDL-AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 374 ~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
+..+...|+.++ +..+++++++++|+++. +.+...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~-----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPF-----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHHHHc
Confidence 999999999876 67899999999999874 345566666666665443
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3.7e-15 Score=162.05 Aligned_cols=349 Identities=11% Similarity=0.101 Sum_probs=278.6
Q ss_pred ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC-C-----ChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHH
Q 008280 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-K-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110 (571)
Q Consensus 37 ~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~-~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~ 110 (571)
|+.-....+.+|... |.+.+|++++++..- + +...-+.|+.+..+. +..+..++..+...-+ ...+...
T Consensus 984 ~PeeVs~~vKaf~~a-glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTA-DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred CHHHhHHHHHHHHhC-CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 344445667778877 999999999998752 2 335667777777666 4455555555544222 4557888
Q ss_pred HHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008280 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMI 190 (571)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 190 (571)
+...|.+++|..+|++.. ......+.++ -..+++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~-~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 999999999999999975 2222233333 27899999999999874 4678999999999999999999999653
Q ss_pred HCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHH
Q 008280 191 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 270 (571)
Q Consensus 191 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 270 (571)
-|...|..++.+|.+.|+++++.+++...++.. +++.+.+.++.+|++.+++++...+. ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 467788999999999999999999999988865 44445556999999999999655443 45677788889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCC
Q 008280 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350 (571)
Q Consensus 271 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 350 (571)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhH
Confidence 99999999999999999984 37889999999999999999999866 346889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh--ccChhHHHHHHH
Q 008280 351 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA--MKKWDDVARIRL 426 (571)
Q Consensus 351 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~g~~~~a~~~~~ 426 (571)
+..|......+ ..++..+..++..|...|.+++|+.+++..++++|.... .|..|+.+|++ -++..++.++|.
T Consensus 1266 f~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g-mftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1266 FRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG-MFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999987754 345667779999999999999999999999999999888 89888888875 456666666665
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=4.7e-17 Score=161.54 Aligned_cols=263 Identities=13% Similarity=0.047 Sum_probs=149.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHH
Q 008280 100 NSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGY 173 (571)
Q Consensus 100 d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 173 (571)
+...|..+...+.+.|++++|++.|+++. +.+..++..+...|.+.|++++|+..|++..+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44557777777788888888888877664 44567777777888888888888888777653 3566788888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 008280 174 VENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252 (571)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 252 (571)
...|++++|+..|+++.+. .|+.. .+..+. ....++..+...|.+.|++++|
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC--------------------------------------------CCHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHH
Confidence 8888888888888877763 22211 111110 0111223334445555555555
Q ss_pred HHHHHhhCC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 253 CKLFLEIQR--K---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 253 ~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
...|+++.+ | +..+|..+...|...|++++|+..|++..+.. +.+..++..+..++...|++++|...|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555554431 1 34455555555555555555555555555432 22344555555556666666666666655554
Q ss_pred hcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CC----------CCCHhHHHHHHHHHHhcCCHhHHHHHHHH
Q 008280 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PF----------KPQPAIFGTLLSACRVHKRLDLAEFAAMN 392 (571)
Q Consensus 328 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 392 (571)
. .+.+...+..+..+|.+.|++++|.+.|+++ |. ..+..+|..+..++...|+.+.+..+.++
T Consensus 276 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 I--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp H--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred c--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 2 1223555555666666666666666665554 10 01245677777777777777766666554
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.2e-16 Score=155.69 Aligned_cols=270 Identities=10% Similarity=0.023 Sum_probs=173.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 008280 135 WTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 211 (571)
Q Consensus 135 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 211 (571)
+..+...+...|++++|..+|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 34444555555555555555555432 234455555555555555555555555554432 22333444444444444
Q ss_pred CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHH-HH-HHHHcCChHHHHHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM-IS-GYAQHGKGEKALRLFDK 289 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~ 289 (571)
|++++|...++.+.+.. +.+...+..+.... ++......+ .. .+...|++++|...+++
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 44444444444444432 11111111110000 000000111 22 36677888999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCH
Q 008280 290 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQP 367 (571)
Q Consensus 290 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~ 367 (571)
+.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+.
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 87764 336778888888999999999999999988764 3445778889999999999999999999886 22 2457
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC------------CCchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA------------NAAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
.+|..+...+...|++++|...++++++..|+ ++. .+..++.+|.+.|++++|..++++.
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS-MWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH-HHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88999999999999999999999999999998 566 8999999999999999999988644
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=4.8e-16 Score=148.70 Aligned_cols=248 Identities=10% Similarity=0.036 Sum_probs=201.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 008280 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247 (571)
Q Consensus 170 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 247 (571)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3446678999999999877543 24443 3446677899999999999875543 23567778888999999999
Q ss_pred CHHHHHHHHHhhCC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 008280 248 DLEDACKLFLEIQR----K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322 (571)
Q Consensus 248 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 322 (571)
+.++|.+.++++.. | +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 566788888999999999999999987 457778888999999999999999999
Q ss_pred HHhHHhcCCCCChHh---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC
Q 008280 323 DSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 397 (571)
Q Consensus 323 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 397 (571)
+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.++..|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 355321 123445555569999999999988 223578899999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhccChhH-HHHHHHHHHhCCC
Q 008280 398 PANAAGCYVQLANIYAAMKKWDD-VARIRLSMKENNV 433 (571)
Q Consensus 398 p~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~ 433 (571)
|+++. ++..++.++...|+.++ +.++++++.+...
T Consensus 231 p~~~~-~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPE-TLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999 99999999999999987 5688888876443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.2e-16 Score=153.66 Aligned_cols=270 Identities=12% Similarity=0.041 Sum_probs=169.8
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCHHHHHHHHHHH
Q 008280 100 NSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLAEKLFDEMPT---KNLVTWNAMIAGY 173 (571)
Q Consensus 100 d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 173 (571)
+...+..+...+...|++++|+.+|+++. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45677888999999999999999998874 45678889999999999999999999998763 4677999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH--HHHhcCCHH
Q 008280 174 VENSWAEDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS--MYCKCGDLE 250 (571)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~ 250 (571)
...|++++|++.|+++.... |+. ..+..+...+ ++......+.. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 99999999999999999863 332 2332221000 00001111211 244445555
Q ss_pred HHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 251 DACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 251 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
+|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554431 244555555566666666666666666655432 22344555566666666666666666666554
Q ss_pred hcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 328 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-------------QPAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 328 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|..++++.
T Consensus 235 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 I--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred c--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2233555666666666666666666666554 1112 2456666667777777777777666655
Q ss_pred hcc
Q 008280 394 FNL 396 (571)
Q Consensus 394 ~~~ 396 (571)
++.
T Consensus 313 l~~ 315 (327)
T 3cv0_A 313 VEP 315 (327)
T ss_dssp SHH
T ss_pred HHh
Confidence 443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.2e-15 Score=155.03 Aligned_cols=356 Identities=11% Similarity=-0.001 Sum_probs=227.9
Q ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHhhCC------------CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC-------
Q 008280 38 VVSYNIMLSCILLNSDDVVAAFDFFQRLP------------IKDTASWNTMISGFVQKKNMAKARDLFLAMPE------- 98 (571)
Q Consensus 38 ~~~~~~ll~~~~~~~g~~~~A~~~~~~m~------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 98 (571)
...||.|...+... |+.++|++.|++.. .....+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLK-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45678888888888 99999998887642 12456788899999999999999888876531
Q ss_pred ---C-CcchHHHHHHHHHHc--CChHHHHHHHhhCC---CCChhHHHHHHHHH---HhcCCHHHHHHHHhhCC---CCCH
Q 008280 99 ---K-NSVSWSAMISGYIEC--GQLDKAVELFKVAP---VKSVVAWTAMISGY---MKFGKVDLAEKLFDEMP---TKNL 163 (571)
Q Consensus 99 ---~-d~~~~~~li~~~~~~--g~~~~A~~~~~~~~---~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~---~~~~ 163 (571)
+ ...++..+..++... +++++|++.|++.. +.++..+..+..++ ...++.++|.+.|++.. ..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 234555555555554 46889999998764 44556666665553 34566777777777654 2455
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHH
Q 008280 164 VTWNAMIAGYVE----NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 239 (571)
Q Consensus 164 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 239 (571)
.++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 666666655554 457788999998887753 4456677888888899999999999999888765 4556667777
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008280 240 ISMYCKC-------------------GDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297 (571)
Q Consensus 240 i~~y~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 297 (571)
...|... +..+.|...|++.. ..+..+|..+...|...|++++|+..|++.......|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 7666432 23566777777654 3467789999999999999999999999998764433
Q ss_pred CHH--HHHHHHH-HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHH
Q 008280 298 DSI--TFVALLL-ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGT 372 (571)
Q Consensus 298 ~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ 372 (571)
... .+..+.. .....|+.++|...|.+..+ +.|+........ ..+.+++++. . .+.++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 322 2222322 34578999999999998875 455543332222 2233333332 1 1245789999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHH
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~ 409 (571)
|...|...|++++|+..|+++++++|.+|. +...++
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~-a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPS-ASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-HhhcCC
Confidence 999999999999999999999999998887 655543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=7.4e-15 Score=134.04 Aligned_cols=195 Identities=14% Similarity=0.027 Sum_probs=154.6
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008280 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 306 (571)
Q Consensus 230 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 306 (571)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56677788888889999999999999988764 356788888999999999999999999988754 23556788888
Q ss_pred HHHHhc-----------CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 008280 307 LACNHA-----------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLL 374 (571)
Q Consensus 307 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 374 (571)
.++... |++++|...+++..+. .+.+...+..+..+|...|++++|++.|++. ....++..|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999863 2345788899999999999999999999887 1116788999999
Q ss_pred HHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHH
Q 008280 375 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 428 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 428 (571)
.++...|++++|+..++++++.+|+++. .+..++.++...|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLD-LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999998 9999999999999999999988764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.7e-14 Score=135.10 Aligned_cols=219 Identities=11% Similarity=0.050 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 243 (571)
..|..+...+...|++++|+..|+++.+.. .+.. ++..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~-----------------------------------~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDIT-----------------------------------YLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHH-----------------------------------HHHHHHHHH
Confidence 345556666666666666666666655543 3334 444455555
Q ss_pred HhcCCHHHHHHHHHhhCC--C----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008280 244 CKCGDLEDACKLFLEIQR--K----D----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 313 (571)
Q Consensus 244 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 313 (571)
...|++++|...|++..+ | + ..+|..+...|...|++++|+..|++.... .|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHh
Confidence 555555555555554432 1 1 466777888888888888888888888764 3443 3455667
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHHHH
Q 008280 314 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAM 391 (571)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 391 (571)
++++|...++.+.. ..+.+...+..+...+...|++++|.+.++++ . .+.+..+|..+...+...|++++|+..++
T Consensus 120 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88899999888875 23445677888889999999999999999887 2 22457888999999999999999999999
Q ss_pred HHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 392 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 392 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
++++.+|+++. ++..++.+|...|++++|.+.+++..+.
T Consensus 198 ~al~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVR-AYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999888 9999999999999999999999888753
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=166.40 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=113.8
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhhC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008280 230 CKDTTALTPLISMYCKCGDLEDACKLFLEIQ-------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302 (571)
Q Consensus 230 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 302 (571)
..-..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999997764 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 303 VALLLACNHAGL-VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 303 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999987 57899999999887 99999999999998887776555555554433
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.7e-15 Score=136.70 Aligned_cols=234 Identities=12% Similarity=-0.000 Sum_probs=155.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HhHHHH
Q 008280 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLG--IRPN----ASSLSS 203 (571)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd----~~t~~~ 203 (571)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999987643 677899999999999999999999999987632 1112 234444
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHH
Q 008280 204 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283 (571)
Q Consensus 204 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 283 (571)
+...+...|++++|...++.+.+.. ++ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4444444555555555544444432 11 1234445566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 008280 284 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P 362 (571)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 362 (571)
...++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|++.+++. .
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666665532 112335556666667777777777777776653 2334666777777777777777777777665 1
Q ss_pred CC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC------CCCCchhHHHHH
Q 008280 363 FK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN------PANAAGCYVQLA 409 (571)
Q Consensus 363 ~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~l~ 409 (571)
.. .+...|..+...+...|++++|...+++++++. |++.. .+..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~-~~~~l~ 254 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE-IDQLYY 254 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH-HHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHH-HHHHHH
Confidence 12 346677778888888888888888888888777 66554 444443
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=166.71 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008280 133 VAWTAMISGYMKFGKVDLAEKLFDEMP-------TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 205 (571)
Q Consensus 133 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 205 (571)
.+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 689999999999999999999997753 5899999999999999999999999999999999999999999999
Q ss_pred HHHhccCch-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC-----ChhhHHHHHHHHHHcC
Q 008280 206 LGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHG 278 (571)
Q Consensus 206 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 278 (571)
.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999974 789999999999999999999999998777654444444443333211 1334444555555544
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=4e-14 Score=133.87 Aligned_cols=242 Identities=11% Similarity=-0.003 Sum_probs=130.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcc----hHHHHHHHH
Q 008280 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT----ALTPLISMY 243 (571)
Q Consensus 168 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~y 243 (571)
.....+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+++.+ ++.. .+..+...|
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHH
Confidence 33444445555555555555554432 1122244444444555555555555555554422 1211 245555556
Q ss_pred HhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 008280 244 CKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 320 (571)
Q Consensus 244 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 320 (571)
.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555432 244556666666666666666666666555431 2233344444423333446666666
Q ss_pred HHHHhHHhcCCCCChHhHHHHHHHHHHcCC---HHHHHHHHHhC----CCCCC------HhHHHHHHHHHHhcCCHhHHH
Q 008280 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGK---LVEAVDLIKKM----PFKPQ------PAIFGTLLSACRVHKRLDLAE 387 (571)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~a~ 387 (571)
.|+.+.+. .+.+...+..+..++...|+ +++|...+++. ...|+ ..+|..+...|...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666542 22234555556666666665 55555555444 11122 256777888899999999999
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 388 FAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 388 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
..++++++++|+++. +...+.......+
T Consensus 242 ~~~~~al~~~p~~~~-a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKK-AIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHH-HHHHHC-------
T ss_pred HHHHHHHhcCccHHH-HHHHhhhhhcccc
Confidence 999999999999987 7766666554433
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4e-14 Score=133.97 Aligned_cols=240 Identities=9% Similarity=-0.084 Sum_probs=176.0
Q ss_pred cCChhHHHHHHHHHHHCCCC--C-CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHH
Q 008280 176 NSWAEDGLKLLRMMIGLGIR--P-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 252 (571)
Q Consensus 176 ~g~~~~A~~~~~~m~~~g~~--p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 252 (571)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45667777777777664211 1 33455666666677777777777777776654 44567778888888888888888
Q ss_pred HHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc
Q 008280 253 CKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 329 (571)
Q Consensus 253 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 329 (571)
...|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888887653 46778888999999999999999999998875 355444444555667779999999999887764
Q ss_pred CCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCch
Q 008280 330 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 403 (571)
Q Consensus 330 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 403 (571)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 34444444 4777788888889999998876 22222 578889999999999999999999999999997754
Q ss_pred hHHHHHHHHhhccChhHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999988765
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=2.4e-14 Score=145.93 Aligned_cols=218 Identities=9% Similarity=-0.027 Sum_probs=132.0
Q ss_pred HHHHHHHHHhccC---chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CCHHHHHHHHHhhCCCChhhHHHHHH
Q 008280 200 SLSSVLLGCSHLS---SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----GDLEDACKLFLEIQRKDVVTWNAMIS 272 (571)
Q Consensus 200 t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~ 272 (571)
.+..+...+...| +.++|...++...+.| +++...+..|..+|... +++++|...|++....+...+..+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444444444455 5555555555555554 33333334455555443 56777777777666335566666666
Q ss_pred H-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHhHHhcCCCCChHhHHHHHHH
Q 008280 273 G-Y--AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-----LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344 (571)
Q Consensus 273 ~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 344 (571)
. | ...+++++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. +.++..+..|..+
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 5 3 34677788888888777665 5555666666665 44 7888888887654 3456666677777
Q ss_pred HHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH--hh
Q 008280 345 LGR----AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY--AA 414 (571)
Q Consensus 345 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~--~~ 414 (571)
|.. ..++++|.+.|++.-...+......|...|.. ..+.++|...++++.+.++.. ....+..+. ..
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~---a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE---ANDLATQLEAPLT 404 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH---HHHHHHHHHTTCC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCC
Confidence 665 33788888888776323345555666666653 458888888888888877644 333344333 23
Q ss_pred ccChhHHHHHHHHHHh
Q 008280 415 MKKWDDVARIRLSMKE 430 (571)
Q Consensus 415 ~g~~~~a~~~~~~m~~ 430 (571)
.++.++|.++.++-.+
T Consensus 405 ~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 405 PAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456667666665443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=2.4e-13 Score=123.92 Aligned_cols=192 Identities=14% Similarity=0.018 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008280 164 VTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243 (571)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 243 (571)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+..+|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444555555555555555555544432 2233344444444444444444444444444433 23344444455555
Q ss_pred Hhc-----------CCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 244 CKC-----------GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 244 ~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 555 666666666665542 245566666666666666666666666666654 4556666666666
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.|++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666552 2334555666666666666666666666554
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2.6e-13 Score=134.28 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-hHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLIS 241 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 241 (571)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467777778888888888888888877653 2345666777777777785 888888888887765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCcHHH
Q 008280 242 MYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-AGLVDL 317 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~ 317 (571)
+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++... -+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 88888999999999887763 4678888899999999999999999999888642 356778888888888 565466
Q ss_pred H-----HHHHHHhHHhcCCCCChHhHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcC--------
Q 008280 318 G-----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG--KLVEAVDLIKKMPFKPQ-PAIFGTLLSACRVHK-------- 381 (571)
Q Consensus 318 a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g-------- 381 (571)
| ...|++.++. -+-+...|..+..+|.+.| ++++|++.++++...|+ ...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4777777753 2334778888888888888 68889888887744444 567788888887764
Q ss_pred -CHhHHHHHHHHH-hccCCCCCchhHHHHHHHHh
Q 008280 382 -RLDLAEFAAMNL-FNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 382 -~~~~a~~~~~~~-~~~~p~~~~~~~~~l~~~~~ 413 (571)
..++|+.+++++ .+++|.... .|..++..+.
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~-~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKE-YWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHH-HHHHHHHHHH
Confidence 258999999999 899998877 7777776654
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.6e-13 Score=127.13 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 311 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 311 (571)
++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33344444444455555554444433 1234455555555666666666666666655542 2244455555566666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHH
Q 008280 312 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFA 389 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~ 389 (571)
.|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 66666666666665542 2334555566666666666666666666554 1 113355666666666666777777777
Q ss_pred HHHHhccCCCCCchhHHHHHHH
Q 008280 390 AMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 390 ~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
++++++.+|+++. .+..+..+
T Consensus 216 ~~~~~~~~p~~~~-~~~~~~~l 236 (243)
T 2q7f_A 216 LDKAIDIQPDHML-ALHAKKLL 236 (243)
T ss_dssp HHHHHHHCTTCHH-HHHHHTC-
T ss_pred HHHHHccCcchHH-HHHHHHHH
Confidence 7777666666655 55444443
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=1.6e-13 Score=139.85 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=222.2
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCC-CCcchHHHHHHHHHHcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHhcC-----
Q 008280 76 MISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFG----- 146 (571)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 146 (571)
+...+.+.|++++|+++|++..+ .+..++..+...|...|+. ++|++.|++..+.++..+..|..++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56677788999999999988754 4566777777777778888 89999998887667777888888666655
Q ss_pred CHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc----hHHHH
Q 008280 147 KVDLAEKLFDEMPT-KNLVTWNAMIAGYVENSWAE---DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS----LQLGK 218 (571)
Q Consensus 147 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~----~~~a~ 218 (571)
+.++|...|++..+ .+...+..|...|...+..+ ++++.+.+....| +......+...+...+. .+.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 67889988888764 34557888888888776543 3555555555444 23455555566666563 44444
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcC---CHHHHHHHHHhhCCC---ChhhHHHHHHHHHHc----CChHHHHHHHH
Q 008280 219 QVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRK---DVVTWNAMISGYAQH----GKGEKALRLFD 288 (571)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~ 288 (571)
.++..... .++..+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... +++++|+..|+
T Consensus 166 ~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 166 RICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44444432 33448888899999999 888999998876542 333446677777554 68889999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-H--HhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC-----CHHHHHHHHHh
Q 008280 289 KMKDEGMKPDSITFVALLLA-C--NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG-----KLVEAVDLIKK 360 (571)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 360 (571)
+.. .| +...+..+... + ...+++++|..+|++..+. | ++..+..|..+|. .| ++++|.+.|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 876 33 44455555555 3 4688999999999888763 3 6677777888887 55 89999999998
Q ss_pred CCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh----ccChhHHHHHHHHHHhCC
Q 008280 361 MPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA----MKKWDDVARIRLSMKENN 432 (571)
Q Consensus 361 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 432 (571)
.- ..++..+..|...|.. ..++++|...|+++.+.+ ++. ....|+.+|.. ..+.++|..+++...+.|
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~-A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNS-ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTT-HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 6667777777777765 348899999999887754 345 78888988875 457888999988887766
Q ss_pred C
Q 008280 433 V 433 (571)
Q Consensus 433 ~ 433 (571)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=4.1e-12 Score=120.19 Aligned_cols=223 Identities=10% Similarity=-0.041 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCchHHHHHHHHHHHhCCCCCCcchHH
Q 008280 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDTTALT 237 (571)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 237 (571)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666666666677777777777666652 233444444444444 555555555555555443 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhhCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008280 238 PLISMYCK----CGDLEDACKLFLEIQR-KDVVTWNAMISGYAQ----HGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308 (571)
Q Consensus 238 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 308 (571)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 45555555 5555555555544332 234444444444544 455555555555544433 23333344444
Q ss_pred HHh----cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----c
Q 008280 309 CNH----AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----H 380 (571)
Q Consensus 309 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 380 (571)
+.. .+++++|...|++..+. .+...+..+...|.. .
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~------------------------------------~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL------------------------------------KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHHHTCSSC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHcCCCCC
Confidence 443 44444444444444331 233444444444544 5
Q ss_pred CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh----ccChhHHHHHHHHHHhCC
Q 008280 381 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA----MKKWDDVARIRLSMKENN 432 (571)
Q Consensus 381 g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 432 (571)
+++++|+..++++++.+| +. .+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~-a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GG-GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HH-HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HH-HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555444 22 45555555555 555555555555555444
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=7.1e-13 Score=123.67 Aligned_cols=197 Identities=11% Similarity=-0.012 Sum_probs=153.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44566777788888888888888887652 356778888888888888888888888887653 33566777788888
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHH
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLA 386 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 386 (571)
...|++++|..+++++.+ .+..| +...+..+...|.+.|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888765 12344 4667778888888888888888888776 11 23467788888888888999999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 387 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 387 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
...++++++..|++.. .+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNAR-SLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999888888888877 88888888888899999988888887643
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=3.7e-12 Score=120.57 Aligned_cols=192 Identities=16% Similarity=0.045 Sum_probs=159.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhhCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008280 232 DTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQ----HGKGEKALRLFDKMKDEGMKPDSITFVALL 306 (571)
Q Consensus 232 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 306 (571)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4456667788888888888888888876644 56778888888888 899999999999988765 677788888
Q ss_pred HHHHh----cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 008280 307 LACNH----AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 378 (571)
Q Consensus 307 ~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 378 (571)
..+.. .+++++|...|++..+. .++..+..+..+|.. .|++++|++.|++.-...+...+..+...|.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888 89999999999988763 267788889999998 9999999999988722236778888888888
Q ss_pred h----cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh----ccChhHHHHHHHHHHhCCC
Q 008280 379 V----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA----MKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 379 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 433 (571)
. .+++++|+..++++.+.++ +. .+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~--~~-a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKD--SP-GCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTC--HH-HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC--HH-HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 8 9999999999999988753 45 89999999999 9999999999998887654
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.1e-12 Score=122.42 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 242 (571)
...|..+...+...|++++|+..|+++.... +.+...+ ..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~-----------------------------------~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAH-----------------------------------AALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHH-----------------------------------HHHHHH
Confidence 4567777777888888888888887776642 2233344 444445
Q ss_pred HHhcCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLG 318 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 318 (571)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555433 12445566666667777777777777777665323343 34566666777777888888
Q ss_pred HHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888777653 2334677778888888888888888888776 222 44667778888888899999999999999999
Q ss_pred CCCCCc
Q 008280 397 NPANAA 402 (571)
Q Consensus 397 ~p~~~~ 402 (571)
.|+++.
T Consensus 239 ~p~~~~ 244 (252)
T 2ho1_A 239 YPGSLE 244 (252)
T ss_dssp CTTSHH
T ss_pred CCCCHH
Confidence 888764
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2.5e-13 Score=125.84 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=156.5
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
.....+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677788889999999999999998764 367789999999999999999999999998764 346778888999
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 385 (571)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 3456788999999999999999999999887 22 2467889999999999999999
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
|+..++++++..|+++. ++..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHAD-AFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHH-HHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999988 99999999999999999999999987643
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=9e-13 Score=120.35 Aligned_cols=195 Identities=13% Similarity=0.030 Sum_probs=130.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...|++..... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555666666677777777777665542 345566777777777777777777777766543 23455666667777
Q ss_pred Hhc-CcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhH
Q 008280 310 NHA-GLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 310 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 385 (571)
... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|++.++++ ... .+...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777665 122332 556667777777777777777777665 112 235667777777777777777
Q ss_pred HHHHHHHHhccCC-CCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 386 AEFAAMNLFNLNP-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 386 a~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|...++++++..| +++. .+..++..+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQAD-DLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6665 666777777777777777777777654
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=1.3e-12 Score=123.47 Aligned_cols=228 Identities=11% Similarity=0.003 Sum_probs=187.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CCh----hhHHHHHHH
Q 008280 200 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDV----VTWNAMISG 273 (571)
Q Consensus 200 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 273 (571)
.+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 45556677889999999999999999875 45667899999999999999999999998765 232 248899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 008280 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 353 (571)
|...|++++|+..|++..+.. +.+..++..+...+...|++++|...|++..+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864 335578889999999999999999999988752 34457777777734445669999
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC---HhHHHHHHHHHhccC---CCC-----CchhHHHHHHHHhhccChhH
Q 008280 354 AVDLIKKM-PFKP-QPAIFGTLLSACRVHKR---LDLAEFAAMNLFNLN---PAN-----AAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 354 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~~l~~~~~~~g~~~~ 420 (571)
|.+.|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. .. +|..++.+|...|++++
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE-ANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH-HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHcCCHHH
Confidence 99999887 2234 46788888888888888 888999999998764 542 14 78889999999999999
Q ss_pred HHHHHHHHHhCC
Q 008280 421 VARIRLSMKENN 432 (571)
Q Consensus 421 a~~~~~~m~~~~ 432 (571)
|.+.+++..+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999988744
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.2e-12 Score=117.74 Aligned_cols=203 Identities=13% Similarity=0.010 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008280 162 NLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 241 (571)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 241 (571)
+...|..+...+...|++++|+..|+++.+.. +.+.. ++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHH
Confidence 34566666777777777777777777666532 22233 3444555
Q ss_pred HHHhcCCHHHHHHHHHhhC---CCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHH
Q 008280 242 MYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVD 316 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 316 (571)
.|...|++++|.+.|+++. ..+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555443 23455666667777777 777777777777766323333 345666777777778888
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK--PQPAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
+|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888887777653 2334667777888888888888888888776 112 35566777777778888999998888888
Q ss_pred hccCCCCCc
Q 008280 394 FNLNPANAA 402 (571)
Q Consensus 394 ~~~~p~~~~ 402 (571)
.+..|+++.
T Consensus 209 ~~~~p~~~~ 217 (225)
T 2vq2_A 209 QANFPYSEE 217 (225)
T ss_dssp HHHCTTCHH
T ss_pred HHhCCCCHH
Confidence 888888765
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=4.1e-13 Score=134.72 Aligned_cols=264 Identities=12% Similarity=0.042 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhccCchHHHHHHHHHHHhC----CCC-CCcch
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLC-KDTTA 235 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~ 235 (571)
.+......+...|++++|+..|+++...+ +.+ ...+..+...+...|+++.|...++.++.. +.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444445555555555555555554431 111 123344444445555555555555443321 111 11334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHH
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGK--------------------GEKALRL 286 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 286 (571)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55666677777777777777665542 12 3467777777777888 7888887
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHH
Q 008280 287 FDKMKDE----GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDL 357 (571)
Q Consensus 287 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 357 (571)
+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7765432 11111 235667777888888888888888877653211122 33677888888889999988888
Q ss_pred HHhC----CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC------CchhHHHHHHHHhhccChhHHHH
Q 008280 358 IKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCYVQLANIYAAMKKWDDVAR 423 (571)
Q Consensus 358 ~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~g~~~~a~~ 423 (571)
+++. +..++ ..++..+...+...|++++|...++++++..+.. .. ++..++.+|...|++++|.+
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR-ACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHcCCHHHHHH
Confidence 8776 11122 4577788888899999999999999887754332 33 77788999999999999999
Q ss_pred HHHHHHh
Q 008280 424 IRLSMKE 430 (571)
Q Consensus 424 ~~~~m~~ 430 (571)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887764
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=5.1e-13 Score=126.32 Aligned_cols=233 Identities=13% Similarity=-0.028 Sum_probs=150.8
Q ss_pred cCCCHHHHHHHHhhCCCC-------CcchHHHHHHHHHHcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHH
Q 008280 82 QKKNMAKARDLFLAMPEK-------NSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGKVDLA 151 (571)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~-------d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 151 (571)
..|++++|+..|+++.+. +..+|..+...+...|++++|++.|+++. +.+..++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 345666777776665431 34566667777777777777777776653 44567777777777788888888
Q ss_pred HHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCC
Q 008280 152 EKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228 (571)
Q Consensus 152 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 228 (571)
...|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 877777653 35678888888888888888888888888774 3544444445555566678888888887766653
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD-------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 301 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 301 (571)
+++...+ .++..+...++.++|...++.....+ ..+|..+...|...|++++|...|++.... .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 3333333 36667777777788888887766532 356666777777777777777777777654 2322
Q ss_pred HHHHHHHHHhcCcHHHHHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYF 322 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~ 322 (571)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 112233445556666655544
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=137.00 Aligned_cols=286 Identities=11% Similarity=0.025 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHhhCC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----CHHHH
Q 008280 103 SWSAMISGYIECGQLDKAVELFKVAP---VKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPT-----K----NLVTW 166 (571)
Q Consensus 103 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 166 (571)
.+......+...|++++|+..|++.. +.+ ..++..+...|...|++++|...|++... . ...+|
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 44455556666666666666665543 122 13455555566666666666665554321 1 12345
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 008280 167 NAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245 (571)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 245 (571)
..+...|...|++++|+..|++...... .++. .....++..+...|..
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHHH
Confidence 5555555556666666655555443200 0010 0012244555555666
Q ss_pred cCC--------------------HHHHHHHHHhhCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-C
Q 008280 246 CGD--------------------LEDACKLFLEIQR-----K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-M 295 (571)
Q Consensus 246 ~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 295 (571)
.|+ +++|...|++..+ . ...+|..+...|...|++++|+..|++..... -
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 666 6666665554321 1 13467777888888888888888888765421 0
Q ss_pred CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 008280 296 KPD----SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----PF 363 (571)
Q Consensus 296 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 363 (571)
.++ ..++..+...+...|++++|..++++..+...-.++ ..++..+...|...|++++|.+.+++. +.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 122 236777778888889999998888877643111111 557778888899999999999888776 11
Q ss_pred CCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC------CCCchhHHHHHHHHhhccChhH
Q 008280 364 KPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP------ANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 364 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
.++ ..++..+...+...|++++|...+++++++.+ .... ++..++.+|...|+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT-ARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH-HHHHHHHHHHHhhHhHH
Confidence 122 45778888899999999999999999877532 2233 67788888888887643
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=5.7e-13 Score=129.61 Aligned_cols=261 Identities=12% Similarity=0.045 Sum_probs=162.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhccCchHHHHHHHHHHHhC----CC-CCCcchHHHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PL-CKDTTALTPL 239 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~l 239 (571)
....+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+++. +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3344444455555555554444431 111 123334444444445555554444443321 10 1113345566
Q ss_pred HHHHHhcCCHHHHHHHHHhhCC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGK--------------------GEKALRLFDKM 290 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 290 (571)
...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6677777777777777666432 12 2366777777777777 77787777765
Q ss_pred HHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 291 KDE----GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 291 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431 11111 235666777888888888888888877643111111 336778888888999999998888776
Q ss_pred ----CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC------CchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 362 ----PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 362 ----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
+..++ ..++..+...+...|++++|...++++++..|.. .. ++..++.+|.+.|++++|.+.+++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR-ACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHcCChHHHHHHHHH
Confidence 11122 4577778888999999999999999887754321 23 677899999999999999999988
Q ss_pred HHhC
Q 008280 428 MKEN 431 (571)
Q Consensus 428 m~~~ 431 (571)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7753
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=3.6e-13 Score=135.62 Aligned_cols=260 Identities=10% Similarity=-0.001 Sum_probs=159.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCchHHHHHHHHHHHhC----C-CCCCcchHHHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNA----SSLSSVLLGCSHLSSLQLGKQVHQLVFKS----P-LCKDTTALTPL 239 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l 239 (571)
+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++.+++. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444444444444444444431 1111 23333444444444444444444444332 1 01123445556
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 008280 240 ISMYCKCGDLEDACKLFLEIQRK---------DVVTWNAMISGYAQHGK-----------------GEKALRLFDKMKDE 293 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 293 (571)
...|...|++++|...|++..+. ...+|..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666677777766666654321 23466677777777777 77777777765431
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC---
Q 008280 294 ----GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM--- 361 (571)
Q Consensus 294 ----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~--- 361 (571)
+-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11111 235666777888888888888888777653211112 236777888888889988888888766
Q ss_pred -CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC------CCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 362 -PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA------NAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 362 -~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+...+ ..++..+...+...|++++|...++++++..+. ... ++..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR-ACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111 457778888889999999999999988775332 233 778899999999999999999988765
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.5e-12 Score=128.72 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=192.7
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC-HHHHHHHHHhhCC---CChhhHHHHHHHH
Q 008280 199 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQR---KDVVTWNAMISGY 274 (571)
Q Consensus 199 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 274 (571)
..|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|++..+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999876 5678889999999999997 9999999998763 4778999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH-cCCHHH
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR-AGKLVE 353 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 353 (571)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|...|+++++. -+.+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999864 336778999999999999999999999999874 34458899999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHhHHHHHHHHHHhcC--CHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc--------
Q 008280 354 A-----VDLIKKM-PFKP-QPAIFGTLLSACRVHK--RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK-------- 416 (571)
Q Consensus 354 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-------- 416 (571)
| ++.|++. ...| +...|..+...+...| ++++|+..++++ +.+|+++. .+..|+.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~-al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY-LIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH-HHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH-HHHHHHHHHHHHhcccccchH
Confidence 7 4667665 2334 4689999999998888 689999999998 89999988 9999999999875
Q ss_pred -ChhHHHHHHHHH-HhC
Q 008280 417 -KWDDVARIRLSM-KEN 431 (571)
Q Consensus 417 -~~~~a~~~~~~m-~~~ 431 (571)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999988 553
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.9e-12 Score=112.49 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=124.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHH
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 342 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 342 (571)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777777777777777776653 224556777777777888888888877777653 334466666777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhH
Q 008280 343 DLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
..+...+++++|.+.+++. .. +.+...+..+...+...|++++|+..++++++.+|+++. ++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR-AYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh-HHHHHHHHHHHCCCHHH
Confidence 7777888888888877766 11 234677888888888888888888888888888888887 88888888888888888
Q ss_pred HHHHHHHHHhCC
Q 008280 421 VARIRLSMKENN 432 (571)
Q Consensus 421 a~~~~~~m~~~~ 432 (571)
|.+.|++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 888888877643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=5e-13 Score=137.09 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=176.7
Q ss_pred hHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008280 214 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL-EDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDK 289 (571)
Q Consensus 214 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 289 (571)
++.+...+....... +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565555443 45677788888899999999 999999987653 4577899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc--------CCHH
Q 008280 290 MKDEGMKPDSITFVALLLACNHA---------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA--------GKLV 352 (571)
Q Consensus 290 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 352 (571)
..+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 57778888888999999 9999999999999874 344588899999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 353 EAVDLIKKM-PFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 353 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
+|++.|++. ...| +...|..+..+|...|++++|+..|+++++++|+++. ++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE-PQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 3345 6789999999999999999999999999999999988 999999999999999999986644
Q ss_pred H
Q 008280 428 M 428 (571)
Q Consensus 428 m 428 (571)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=1.4e-10 Score=122.40 Aligned_cols=402 Identities=11% Similarity=0.069 Sum_probs=232.4
Q ss_pred CCCCcchHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCC---HHHHHHHHhhCCC-----CCh
Q 008280 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDD---VVAAFDFFQRLPI-----KDT 70 (571)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~---~~~A~~~~~~m~~-----~d~ 70 (571)
+|-|..+|..+++.+.+.+ .++.++.+|+.+.. .....|..-+..-.+. |+ .+.+.++|++... |++
T Consensus 62 np~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CcCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 3456777888888877777 88888888887764 3445677767766666 77 8888888877542 667
Q ss_pred hhHHHHHHHHHcCCCH--------HHHHHHHhhCC------CC-CcchHHHHHHHHH---------HcCChHHHHHHHhh
Q 008280 71 ASWNTMISGFVQKKNM--------AKARDLFLAMP------EK-NSVSWSAMISGYI---------ECGQLDKAVELFKV 126 (571)
Q Consensus 71 ~~~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-d~~~~~~li~~~~---------~~g~~~~A~~~~~~ 126 (571)
..|...+....+.++. +...++|+... .+ +...|...+.-.. ..++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 7777777655544432 23345665432 22 2345666655432 23346677777776
Q ss_pred CCCCCh----hHHHHHHHHHHh-------------cCCHHHHHHHHhhC-----------CC----------C--C----
Q 008280 127 APVKSV----VAWTAMISGYMK-------------FGKVDLAEKLFDEM-----------PT----------K--N---- 162 (571)
Q Consensus 127 ~~~~~~----~~~~~li~~~~~-------------~g~~~~A~~~~~~~-----------~~----------~--~---- 162 (571)
.+.... .+|......--. ..+++.|...+.++ +. | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 653211 222211111000 11233344444321 00 0 0
Q ss_pred --HHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHH-HHHHHHHhCCCCCC
Q 008280 163 --LVTWNAMIAGYVENS-------WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKD 232 (571)
Q Consensus 163 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~ 232 (571)
...|...+.---..+ ..+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++..+.. .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 124555554333222 123345566666653 2335556666666666667777775 777777764 2445
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC-------------CC------------hhhHHHHHHHHHHcCChHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR-------------KD------------VVTWNAMISGYAQHGKGEKALRLF 287 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~ 287 (571)
...+..++...-+.|+++.|.++|+++.. |+ ...|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55667777777778888888877776653 21 125666666666777777888888
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 008280 288 DKMKDE-GMKPDSITFVALLLACNH-AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK 364 (571)
Q Consensus 288 ~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 364 (571)
.+..+. + .+....|...+..-.+ .++.+.|..+|+..++. .+.+...+...++.....|+.+.|..+|++. ...
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 777664 2 1122233222222222 24477788888777764 3344556667777777778888888888775 212
Q ss_pred C----CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 365 P----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 365 p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
| ....|...+.--..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~--~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN--KLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC--HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--HHHHHHHHh
Confidence 2 235677777777777888888888888888777765 344444443
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=5.4e-11 Score=114.70 Aligned_cols=219 Identities=8% Similarity=0.038 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-------ccCch-------HHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 008280 180 EDGLKLLRMMIGLGIRPNASSLSSVLLGCS-------HLSSL-------QLGKQVHQLVFKSPLCKDTTALTPLISMYCK 245 (571)
Q Consensus 180 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 245 (571)
++|+..|++..... +.+...|......+. ..|+. ++|..+++.+++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666531 224445554444443 23554 7777777777763224455677778888888
Q ss_pred cCCHHHHHHHHHhhCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCcHHHHHH
Q 008280 246 CGDLEDACKLFLEIQR--K-DVV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-HAGLVDLGIQ 320 (571)
Q Consensus 246 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 320 (571)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887664 2 333 78888888888888888888888887754 233344443333322 3688899999
Q ss_pred HHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 008280 321 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P---FKP--QPAIFGTLLSACRVHKRLDLAEFAAMNLF 394 (571)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (571)
+|+...+. .+.++..|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888764 2345778888888888889999999888877 1 244 35688888888888899999999999999
Q ss_pred ccCCCCCc
Q 008280 395 NLNPANAA 402 (571)
Q Consensus 395 ~~~p~~~~ 402 (571)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88888664
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=2.9e-12 Score=124.56 Aligned_cols=264 Identities=12% Similarity=0.025 Sum_probs=155.8
Q ss_pred HHHHHHHHHcCChHHHHHHHhhCC---CCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----CHHHHHH
Q 008280 105 SAMISGYIECGQLDKAVELFKVAP---VKS----VVAWTAMISGYMKFGKVDLAEKLFDEMPT-----K----NLVTWNA 168 (571)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~ 168 (571)
......+...|++++|+..|+++. +.+ ..++..+...|...|++++|...|++..+ + ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334455566666666666665543 122 13445555556666666666655554321 1 1234555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 247 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 247 (571)
+...|...|++++|+..|++...... .++.. ....++..+...|...|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHcC
Confidence 55555555555555555555443100 01100 00124444555555555
Q ss_pred C--------------------HHHHHHHHHhhCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CC
Q 008280 248 D--------------------LEDACKLFLEIQR-----K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KP 297 (571)
Q Consensus 248 ~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 297 (571)
+ +++|...+++... . ...++..+...+...|++++|...+++..+... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 5 5566555554321 1 134677777788888888888888887654210 11
Q ss_pred C----HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCC
Q 008280 298 D----SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKP 365 (571)
Q Consensus 298 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p 365 (571)
+ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++. +..+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 226667777888888888888888877643111111 556778888899999999999888776 1111
Q ss_pred C----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 366 Q----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 366 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
+ ..++..+...+...|++++|...+++++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2 347778888999999999999999999887654
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=1.4e-12 Score=131.34 Aligned_cols=265 Identities=11% Similarity=0.016 Sum_probs=161.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhCC---CCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCHHHHH
Q 008280 104 WSAMISGYIECGQLDKAVELFKVAP---VKSV----VAWTAMISGYMKFGKVDLAEKLFDEMPT---------KNLVTWN 167 (571)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~ 167 (571)
+..+...+...|++++|+..|+++. +.+. .++..+...|...|++++|...|++..+ ....+|.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3344555666666666666665543 1222 2455555556666666666655554431 1123455
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhc
Q 008280 168 AMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKC 246 (571)
Q Consensus 168 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~ 246 (571)
.+...|...|++++|+..|++.....- +.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHc
Confidence 555555555666665555555443100 000 011123445555566666
Q ss_pred CC-----------------HHHHHHHHHhhCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-
Q 008280 247 GD-----------------LEDACKLFLEIQR-----K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPD- 298 (571)
Q Consensus 247 g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 298 (571)
|+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 6666666554331 1 234677778888888888888888887754211 112
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC----ChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-
Q 008280 299 ---SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ- 366 (571)
Q Consensus 299 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~- 366 (571)
..++..+...+...|++++|...+++..+...-.. ....+..+...|.+.|++++|.+.+++. +..++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 12667778888889999999998887765321111 1467778888999999999999988876 11112
Q ss_pred ---HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 367 ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 367 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
..++..+...|...|++++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 357788888999999999999999999887653
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=5.3e-11 Score=114.76 Aligned_cols=210 Identities=7% Similarity=0.015 Sum_probs=146.5
Q ss_pred HHHHHHHhhCCC---CCHHHHHHHHHHHH-------HcCCh-------hHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhc
Q 008280 149 DLAEKLFDEMPT---KNLVTWNAMIAGYV-------ENSWA-------EDGLKLLRMMIGLGIRP-NASSLSSVLLGCSH 210 (571)
Q Consensus 149 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~ 210 (571)
+.|..+|++... .++..|..++..+. +.|++ ++|...|++.... +.| +...|..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 456666666553 35566776666655 34665 7788888877762 134 44467777777777
Q ss_pred cCchHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHHHH-HcCChHHHHH
Q 008280 211 LSSLQLGKQVHQLVFKSPLCKDTT-ALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYA-QHGKGEKALR 285 (571)
Q Consensus 211 ~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~-~~g~~~~A~~ 285 (571)
.|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|..+|++..+. +...|...+.... ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 788888888888887753 22333 7888888888888888888888877642 3334443332222 2688999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC--ChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA--KPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+|++..+.. +-+...+..++..+.+.|++++|..+|++......++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998887653 23566777888888888999999999998887422454 3667888888888899999999888876
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1.2e-11 Score=109.40 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=141.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 307 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 307 (571)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788899999999999999999998753 467889999999999999999999999987754 335667777788
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 385 (571)
.+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++. ... .+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999988763 3455788889999999999999999999887 223 357889999999999999999
Q ss_pred HHHHHHHHhccCCCCC
Q 008280 386 AEFAAMNLFNLNPANA 401 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~ 401 (571)
|+..|+++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999764
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=8e-12 Score=124.63 Aligned_cols=221 Identities=12% Similarity=0.047 Sum_probs=127.8
Q ss_pred HhccCchHHHHHHHHHHHhC----CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhhCC-----CC-----hhhHHHHHH
Q 008280 208 CSHLSSLQLGKQVHQLVFKS----PLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQR-----KD-----VVTWNAMIS 272 (571)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 272 (571)
+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ ++ ..+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555554442 1000 123455566666666666666666555431 11 235666667
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHHhc---CC-CCChHhHHHHHH
Q 008280 273 GYAQHGKGEKALRLFDKMKDEGM-KPDS----ITFVALLLACNHAGLVDLGIQYFDSMVNDY---GI-AAKPDHYTCMVD 343 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~ 343 (571)
.|...|++++|+..|++..+... .++. .++..+...+...|++++|...+++..+-. +. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777766543210 1111 356666677777777777777776665410 12 222556667777
Q ss_pred HHHHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---HhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 344 LLGRAGKLVEAVDLIKKM----PF--KPQ-PAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
.|.+.|++++|.+.+++. +. .|. ...+..+...+...|+ +++|+..+++. ...|.... .+..|+.+|.
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~-~~~~la~~y~ 350 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED-FAIDVAKYYH 350 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH-HHHHHHHHHH
Confidence 777777777777777665 10 111 1234556666667777 66666666665 22333333 6777888888
Q ss_pred hccChhHHHHHHHHHHh
Q 008280 414 AMKKWDDVARIRLSMKE 430 (571)
Q Consensus 414 ~~g~~~~a~~~~~~m~~ 430 (571)
..|++++|.+.+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888877653
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=9.6e-12 Score=124.02 Aligned_cols=229 Identities=8% Similarity=0.001 Sum_probs=156.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC-CCCC----HhHHHHHHHHHhccCchHHHHHHHHHHHhCCC------CCCcchHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLG-IRPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL------CKDTTALT 237 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g-~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~~~~~~ 237 (571)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+..+++.-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3444555666666666666555420 0111 23445555555566666666666655544210 01134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 008280 238 PLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKP-DSITFV 303 (571)
Q Consensus 238 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 303 (571)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888877652 12 247888899999999999999999987662 3223 345788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHHhcC---CCCChHhHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCH-hHHHHHHHH
Q 008280 304 ALLLACNHAGLVDLGIQYFDSMVNDYG---IAAKPDHYTCMVDLLGRAGK---LVEAVDLIKKMPFKPQP-AIFGTLLSA 376 (571)
Q Consensus 304 ~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 376 (571)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888999999999999999988765311 11223345678888888999 99999999998644443 467788899
Q ss_pred HHhcCCHhHHHHHHHHHhccC
Q 008280 377 CRVHKRLDLAEFAAMNLFNLN 397 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~ 397 (571)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.3e-09 Score=115.10 Aligned_cols=395 Identities=11% Similarity=0.047 Sum_probs=273.0
Q ss_pred CChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHcCCC---HHHHHHHHhhCCC-----CCcchH
Q 008280 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTMISGFVQKKN---MAKARDLFLAMPE-----KNSVSW 104 (571)
Q Consensus 36 ~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~d~~~~ 104 (571)
.|..+|..++....+. +.++.++.+|+++.. .....|...+..-.+.|+ ++.+..+|++... |++..|
T Consensus 64 ~d~~~W~~yi~~~~~~-~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSL-KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5778999999999888 999999999998764 466778999999899999 9999999998753 677788
Q ss_pred HHHHHHHHHcCCh--------HHHHHHHhhCC------CC-ChhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC
Q 008280 105 SAMISGYIECGQL--------DKAVELFKVAP------VK-SVVAWTAMISGYM---------KFGKVDLAEKLFDEMPT 160 (571)
Q Consensus 105 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~ 160 (571)
...+.-..+.++. +...++|+... .+ +...|...+.... ..++++.++++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766665543 33446676532 22 3467888877654 24457889999998875
Q ss_pred -C--CH-HHHHHHHHHHHH-------------cCChhHHHHHHHHHHH--CCCC---------------C-----CH---
Q 008280 161 -K--NL-VTWNAMIAGYVE-------------NSWAEDGLKLLRMMIG--LGIR---------------P-----NA--- 198 (571)
Q Consensus 161 -~--~~-~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~~---------------p-----d~--- 198 (571)
| +. .+|......-.. ..+++.|...+.++.. .++. | +.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2 11 233322111111 1223445555554432 1221 1 00
Q ss_pred hHHHHHHHHHhccC-------chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHhhCC---CChhhH
Q 008280 199 SSLSSVLLGCSHLS-------SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-KLFLEIQR---KDVVTW 267 (571)
Q Consensus 199 ~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~ 267 (571)
..|...+.---..+ ..+....+|++++..- +.+..+|...+..+.+.|+.++|. .+|++... ++...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 12222222211111 1234567788887753 567888988999999999999996 99988653 456678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 008280 268 NAMISGYAQHGKGEKALRLFDKMKDEGM---------KPD------------SITFVALLLACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 268 ~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 326 (571)
-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|+.+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888889999999999999999876310 132 2357777777788899999999999998
Q ss_pred HhcCCCCChHhHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC--CC
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAG-KLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA--NA 401 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~ 401 (571)
+.. ..+....|...+.+-.+.| +.+.|.++|+.. ....+...|...+......|+.+.|..+|++++...|+ ..
T Consensus 462 ~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred Hhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 631 1223445554444445554 589999999887 22245678888888888899999999999999998874 22
Q ss_pred chhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 402 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
...|...+..-...|+.+.+.++.+++.+.-.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22777888888899999999999999987544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=124.84 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC------C-
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGL-------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS------P- 228 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g- 228 (571)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 457888889999999999999999888762 11222344555555666666666666666655543 1
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHH
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE------GMKPD-SIT 301 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 301 (571)
.+....++..+...|...|++++|...|+ +..+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHHH
Confidence 11123344445555555555555555544 43321 11111 123
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhc-----C-CCCChHhHHHHHHHHHHcCCHHHHHHHHHhCC----------CCC
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDY-----G-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----------FKP 365 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p 365 (571)
+..+...+...|++++|..+++.+.+.. + .+.....+..+...|.+.|++++|.+.++++- ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444445555555555555555444320 0 11113344455555555555555555554430 001
Q ss_pred C-------HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 366 Q-------PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 366 ~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
. ...+..+...+...+.+.++...+++.....|.... ++..++.+|.+.|++++|.+++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT-TLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112222223334455566666667777666777666 777888888888888888888876653
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=2.2e-11 Score=130.02 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=125.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...|++.++. -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567777777777777777877777777643 123557777777888888888888888777753 1233677788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHH
Q 008280 344 LLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 421 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a 421 (571)
+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++. ++..|+.+|...|+|++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHhhhhhHHHhcccHHHH
Confidence 888888888888888776 3334 4678888888889999999999999999999998888 888999999999999998
Q ss_pred HHHHHHHHh
Q 008280 422 ARIRLSMKE 430 (571)
Q Consensus 422 ~~~~~~m~~ 430 (571)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=8.8e-10 Score=109.24 Aligned_cols=262 Identities=10% Similarity=-0.021 Sum_probs=166.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCchHHHHHHHHHHHhCCCC-CC----cchHHHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLGIRPNAS----SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-KD----TTALTPL 239 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 239 (571)
....+...|++++|+..+++.....-..+.. .+..+...+...|+++.|...+......... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344555666666666666655532111211 2333444455566666666666655542100 11 1234556
Q ss_pred HHHHHhcCCHHHHHHHHHhhCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQR-------K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK--P--DSITFVA 304 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 304 (571)
...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7777788888888877776542 1 1235566777888889999999888887653221 1 2346667
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HhHHHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-----CMVDLLGRAGKLVEAVDLIKKMP-FKPQ-----PAIFGTL 373 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 373 (571)
+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.- ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77888889999999999888765321111111121 23345778999999999998872 1121 2356677
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCCCC-----CchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNPAN-----AAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
...+...|++++|...++++++..+.. ....+..++.+|...|+.++|...+++..+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 788899999999999999887643321 111667788999999999999999987764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.3e-12 Score=122.11 Aligned_cols=237 Identities=11% Similarity=0.094 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 008280 132 VVAWTAMISGYMKFGKVDLAEKLFDEMPT--------KN---LVTWNAMIAGYVENSWAEDGLKLLRMMIGL------GI 194 (571)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 194 (571)
..++..+...|...|++++|..+|+++.+ .+ ..++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46788899999999999999999988764 22 357888999999999999999999998764 22
Q ss_pred CC-CHhHHHHHHHHHhccCchHHHHHHHHHHHhC------CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhh
Q 008280 195 RP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKS------PL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 266 (571)
Q Consensus 195 ~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 266 (571)
.| ...++..+...+...|++++|...+..+++. +. +....++..+...|...|++++|...|++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------- 178 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR-------- 178 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------
Confidence 23 3456778888899999999999999887753 11 11233444555555555555555555544
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc------CCCC
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDE------GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDY------GIAA 333 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~ 333 (571)
.... +..|+ ..++..+...+...|++++|..+++++.+.. ...+
T Consensus 179 -----------------------a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 179 -----------------------ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp -----------------------HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -----------------------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3321 11111 1234444455555555555555555444310 0111
Q ss_pred C-------hHhHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 334 K-------PDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 334 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
. ...+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555666666666652 223 2467888999999999999999999999887764
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=5.8e-11 Score=104.42 Aligned_cols=157 Identities=19% Similarity=0.095 Sum_probs=82.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 349 (571)
+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3333444444444444444433221 112333444444444444444444444444432 1223444444555555555
Q ss_pred CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHH
Q 008280 350 KLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 350 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
++++|.+.++++ ..+.+...|..+...+...|++++|...++++++..|+++. .+..++.+|...|++++|.+.++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK-VHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555444 11234455666666666667777777777776666666665 666777777777777777777666
Q ss_pred HHh
Q 008280 428 MKE 430 (571)
Q Consensus 428 m~~ 430 (571)
..+
T Consensus 170 ~~~ 172 (186)
T 3as5_A 170 ANE 172 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=7.1e-11 Score=108.29 Aligned_cols=186 Identities=12% Similarity=-0.017 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVALLL 307 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 307 (571)
+..+..+...|.+.|++++|...|++..+ ++...|..+..++...|++++|+..|++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444555555555555555555554331 34444444555555555555555555555443 222 234444455
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCCh-------HhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKP-------DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ---PAIFGTLLSA 376 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 376 (571)
.+...|++++|...+++..+. .+.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555555555555555555442 11122 23444444444455555555554443 22333 2333334333
Q ss_pred HHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+.. .+...++++..+.+.++. .|..+ .....+.+++|...+++..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKE-KYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHH-HHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHH-HHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 322 222333444444433322 22211 22233444777777777665
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.8e-10 Score=114.62 Aligned_cols=221 Identities=11% Similarity=0.038 Sum_probs=136.4
Q ss_pred HhccCchHHHHHHHHHHHhCCC-CC----CcchHHHHHHHHHhcCCHHHHHHHHHhhCC-----CC-----hhhHHHHHH
Q 008280 208 CSHLSSLQLGKQVHQLVFKSPL-CK----DTTALTPLISMYCKCGDLEDACKLFLEIQR-----KD-----VVTWNAMIS 272 (571)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 272 (571)
+...|++++|...+..+.+... .+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555544310 01 123455666677777777777666665431 11 345667777
Q ss_pred HHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc---CCCCChHhHHHHHHH
Q 008280 273 GYAQHGKGEKALRLFDKMKDE----GMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDY---GIAAKPDHYTCMVDL 344 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~ 344 (571)
.|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+++..+-. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777888888888777776542 1111 12356667777888888888888887766511 222235667777888
Q ss_pred HHHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---HhHHHHHHHHHhccCCCCCchhHHHHHHHHhh
Q 008280 345 LGRAGKLVEAVDLIKKM----PF--KPQ-PAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 414 (571)
|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|+..+++. ...|.... .+..++..|..
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~-~~~~la~~y~~ 348 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEA-CARSAAAVFES 348 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHH-HHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHH-HHHHHHHHHHH
Confidence 88888888888888765 11 122 2344555555666677 67777777663 22233334 66788888888
Q ss_pred ccChhHHHHHHHHHHh
Q 008280 415 MKKWDDVARIRLSMKE 430 (571)
Q Consensus 415 ~g~~~~a~~~~~~m~~ 430 (571)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999888888877653
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=2.8e-10 Score=99.99 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=141.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 310 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 310 (571)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3456678888899999999999998875 356788889999999999999999999988763 346678888889999
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHH
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
..|++++|.++++.+.+. .+.+...+..+...|...|++++|.+.++++ . .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998874 3556788889999999999999999999887 2 22457889999999999999999999
Q ss_pred HHHHHhccCCCCCc
Q 008280 389 AAMNLFNLNPANAA 402 (571)
Q Consensus 389 ~~~~~~~~~p~~~~ 402 (571)
.++++++..|+++.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999999888764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=2.2e-10 Score=104.96 Aligned_cols=205 Identities=9% Similarity=0.034 Sum_probs=160.5
Q ss_pred CCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHH
Q 008280 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMIS 272 (571)
Q Consensus 196 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 272 (571)
.|+..+......+...|++++|...++.+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888888999999999999999999987447777888899999999999999999998764 35678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC---hHhHHHHH
Q 008280 273 GYAQHGKGEKALRLFDKMKDEGMKPDS-------ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK---PDHYTCMV 342 (571)
Q Consensus 273 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 342 (571)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|++..+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998753 2234 4577788888999999999999999875 3554 66788888
Q ss_pred HHHHHcCCH--HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 343 DLLGRAGKL--VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 343 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
.+|...|+. ++|..+ . ..+...+..+. ....+.+++|+..++++++++|+++. +...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE-IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHH
Confidence 888776654 333222 1 12344444333 34567799999999999999999987 666665553
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.6e-10 Score=118.50 Aligned_cols=188 Identities=14% Similarity=0.014 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhccCch-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CChhhHHHHHHHHH
Q 008280 199 SSLSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYA 275 (571)
Q Consensus 199 ~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 275 (571)
..+..+...+...|++ ++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ |+...|..+...|.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3344444444444444 44444444444432 22344445555555555555555555554432 33344555555555
Q ss_pred Hc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHhHHhcCCC---CCh
Q 008280 276 QH---------GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA--------GLVDLGIQYFDSMVNDYGIA---AKP 335 (571)
Q Consensus 276 ~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~---~~~ 335 (571)
.. |++++|+..|++..+.. +.+...+..+..++... |++++|...|++..+. .+ .+.
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 258 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNP 258 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCH
Confidence 55 55555555555555432 22344555555555555 5566666666655542 11 245
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 336 DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
..|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|++++|...+
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556666666666666666666554 1122 2345555555555555555555443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1e-09 Score=109.06 Aligned_cols=227 Identities=8% Similarity=0.035 Sum_probs=154.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCchHHHHHHHHHHHhCCC-----C-CCcchHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIGLGI-RPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-----C-KDTTALT 237 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~-~~~~~~~ 237 (571)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+++... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666666654210 122 23445555556666666666666665544210 0 1134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 008280 238 PLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDKMKD-----EGMKPDSITFV 303 (571)
Q Consensus 238 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 303 (571)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 778888888888888888876543 12 34677888889999999999999988765 32 22356778
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC---hHhHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCH-hHHHHHHHH
Q 008280 304 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAK---PDHYTCMVDLLGRAGK---LVEAVDLIKKMPFKPQP-AIFGTLLSA 376 (571)
Q Consensus 304 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 376 (571)
.+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +.+|+..+++.+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999988764222112 3455666677777888 89999999987544443 466778888
Q ss_pred HHhcCCHhHHHHHHHHHhcc
Q 008280 377 CRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~ 396 (571)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=7.3e-10 Score=105.78 Aligned_cols=201 Identities=11% Similarity=0.017 Sum_probs=137.3
Q ss_pred chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC-----CC----hhhHHHHHHHHHHcCChHHH
Q 008280 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKA 283 (571)
Q Consensus 213 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 283 (571)
++++|...+..+ +..|...|++++|...|++..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 3456667777777777765532 11 35777888888888888888
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHHhc-CcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHH
Q 008280 284 LRLFDKMKDEGM---KPD--SITFVALLLACNHA-GLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 284 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 353 (571)
+..|++...... .+. ..++..+...+... |++++|...|++..+-+.-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887654211 111 34677888889886 9999999999988763211111 3568888999999999999
Q ss_pred HHHHHHhC----CCCCCH-----hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchh-----HHHHHHHHh--hccC
Q 008280 354 AVDLIKKM----PFKPQP-----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC-----YVQLANIYA--AMKK 417 (571)
Q Consensus 354 A~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----~~~l~~~~~--~~g~ 417 (571)
|++.|++. +..+.. ..|..+..++...|++++|+..+++.++++|+... . +..++..|. ..++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHcCCHHH
Confidence 99999887 211221 15677888899999999999999999999998654 3 345666664 4577
Q ss_pred hhHHHHHHHHHH
Q 008280 418 WDDVARIRLSMK 429 (571)
Q Consensus 418 ~~~a~~~~~~m~ 429 (571)
+++|.+.|+.+.
T Consensus 256 ~~~A~~~~~~~~ 267 (292)
T 1qqe_A 256 LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHhccCC
Confidence 888888876543
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=3.3e-09 Score=105.07 Aligned_cols=233 Identities=9% Similarity=-0.047 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH----hHHHHHHHHHhccCchHHHHHHHHHHHhC----CCC--C-Cc
Q 008280 166 WNAMIAGYVENSWAEDGLKLLRMMIGLGI-RPNA----SSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLC--K-DT 233 (571)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~ 233 (571)
++.+...+...|++++|...+++.....- .++. .++..+...+...|++++|...++..++. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 33444445555555555555554433100 0111 11233334444555555555555544432 111 1 12
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhhCC--C------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHH
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEIQR--K------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--SITFV 303 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~ 303 (571)
..+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.......++ .....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 3344566666677777777777665431 1 123566677777778888888888877654311111 11111
Q ss_pred ----HHHHHHHhcCcHHHHHHHHHHhHHhcCCCC--ChHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-hH
Q 008280 304 ----ALLLACNHAGLVDLGIQYFDSMVNDYGIAA--KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQP-AI 369 (571)
Q Consensus 304 ----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~ 369 (571)
..+..+...|++++|...++.........+ ....+..+...+...|++++|.+.+++. +..++. ..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 222346678888888888877654211000 1224566777788888888888887765 111122 25
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhccCC
Q 008280 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 398 (571)
+..+..++...|+.++|...+++++...+
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 55666778888888888888888876543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.2e-10 Score=108.27 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=105.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhhCC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCC
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEIQR-----------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE------GMK 296 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 296 (571)
.++..+...|...|++++|...|++..+ ....+|..+...|...|++++|+..|++.... .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444455555555555555555544331 12335555666666666666666666665432 111
Q ss_pred C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc-----C-CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--------
Q 008280 297 P-DSITFVALLLACNHAGLVDLGIQYFDSMVNDY-----G-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------- 361 (571)
Q Consensus 297 p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------- 361 (571)
| ...++..+...+...|++++|..++++..+.. + .+.....+..+...|.+.|++++|.+.++++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 23355666666777777777777776665420 0 1112445666777777777777777777655
Q ss_pred --CCCCC-HhHHHHHHHHHHhcCC------HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 362 --PFKPQ-PAIFGTLLSACRVHKR------LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 362 --~~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
...+. ...|..+.......+. +..+...++......|.... ++..++.+|...|++++|.+++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT-TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122 2344444333333332 22333333333334455555 778888888888888888888887654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=3.6e-09 Score=99.06 Aligned_cols=207 Identities=11% Similarity=0.067 Sum_probs=138.7
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 008280 231 KDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-D---VVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPD-SITF 302 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 302 (571)
.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++...... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666677777888888888888887764 2 2 45677777788888888888888888776532 122 3355
Q ss_pred HHHHHHHHh--------cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 008280 303 VALLLACNH--------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 374 (571)
Q Consensus 303 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 374 (571)
..+..++.. .|++++|...|+++.+.+ +.+......+.......+.+ ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 566666766 788888888888777642 11222222221111111111 12256678
Q ss_pred HHHHhcCCHhHHHHHHHHHhccCCCCCc--hhHHHHHHHHhhc----------cChhHHHHHHHHHHhCCCccCCceeEE
Q 008280 375 SACRVHKRLDLAEFAAMNLFNLNPANAA--GCYVQLANIYAAM----------KKWDDVARIRLSMKENNVVKMPGYSWI 442 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 442 (571)
..|...|++++|+..++++++..|+++. ..+..++.+|... |++++|...++++.+....
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------- 227 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD-------- 227 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC--------
Confidence 8899999999999999999999998532 2788999999877 8999999999998874432
Q ss_pred EECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHH
Q 008280 443 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477 (571)
Q Consensus 443 ~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~ 477 (571)
+|...+....+.++...+.+
T Consensus 228 ---------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 ---------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------CTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=4.3e-10 Score=120.13 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=130.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008280 232 DTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 308 (571)
Q Consensus 232 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 308 (571)
+...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456778888888888888888888887653 456788888888888999999999888887753 2245678888888
Q ss_pred HHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHhHH
Q 008280 309 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLA 386 (571)
Q Consensus 309 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 386 (571)
+...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...|+ ...|..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88999999999998888763 2334778888889999999999999988876 33444 67888888899999999999
Q ss_pred HHHHHHHhccCC
Q 008280 387 EFAAMNLFNLNP 398 (571)
Q Consensus 387 ~~~~~~~~~~~p 398 (571)
.+.+++++++.|
T Consensus 165 ~~~~~kal~l~~ 176 (723)
T 4gyw_A 165 DERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 998888876543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=5.5e-08 Score=91.30 Aligned_cols=159 Identities=9% Similarity=-0.015 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCC-----ChHhHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-----KPDHYT 339 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 339 (571)
++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|.+. .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33444455555555555555555544333211 2233444445555555555555555555432 33 122333
Q ss_pred HHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc----------CCCCCchh
Q 008280 340 CMVDL--LGRAG--KLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL----------NPANAAGC 404 (571)
Q Consensus 340 ~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~ 404 (571)
.|+.+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+. +|+++. +
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~-~ 257 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT-F 257 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH-H
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH-H
Confidence 33333 22222 555555555555 11233222223333555556666666666555443 355555 5
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 405 YVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+..++.++...|+ +|.+++.++.+
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 5555555555554 55555555554
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=2.3e-09 Score=102.31 Aligned_cols=167 Identities=10% Similarity=-0.022 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhCC-----CC----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC----H
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMK-PD----S 299 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~ 299 (571)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344455555555555555555544331 11 24577778888885 8888888888887653111 01 2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCCh-----HhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH------
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP-----DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP------ 367 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~------ 367 (571)
.++..+...+...|++++|...|++..+...-.+.. ..|..+..++...|++++|+..|++. .+.|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 457778888888999999999998887642111111 14667778888899999999999887 333432
Q ss_pred hHHHHHHHHHH--hcCCHhHHHHHHHHHhccCCCCC
Q 008280 368 AIFGTLLSACR--VHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 368 ~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
..+..++.++. ..+++++|+..|+++..++|...
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 13444555654 45678888888888888887654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=6e-09 Score=97.56 Aligned_cols=203 Identities=12% Similarity=0.026 Sum_probs=144.4
Q ss_pred CCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHhhCC--C-C---hhh
Q 008280 196 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD---TTALTPLISMYCKCGDLEDACKLFLEIQR--K-D---VVT 266 (571)
Q Consensus 196 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~ 266 (571)
.+...+......+...|++++|...++.+++.. +.+ ...+..+..+|.+.|++++|...|++..+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355677777888889999999999999999875 333 56788899999999999999999998864 2 1 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHh
Q 008280 267 WNAMISGYAQ--------HGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 337 (571)
Q Consensus 267 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 337 (571)
+..+..++.. .|++++|+..|++..... |+.. ....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7788888888 999999999999998753 4321 21111 111111110 0123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhc----------CCHhHHHHHHHHHhccCCCCCc
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVH----------KRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+..+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778888999999999998877 11232 35677777777765 8999999999999999999863
Q ss_pred --hhHHHHHHHHhhccChhH
Q 008280 403 --GCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 403 --~~~~~l~~~~~~~g~~~~ 420 (571)
.+...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 133344445544444433
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=2.1e-08 Score=91.46 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=120.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhhCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEIQR--KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS--ITFVAL 305 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 305 (571)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 4455667778888888888888888763 32 246777788888888888888888888765322111 134344
Q ss_pred HHHHHh------------------cCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 008280 306 LLACNH------------------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 367 (571)
Q Consensus 306 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 367 (571)
..++.. .|+.++|...|+.+++.+ +-+...+.+...+ +...... .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~-----------~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH-----------H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH-----------H
Confidence 444443 456666666666666431 1122222211110 0000000 0
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc--hhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
.....+...+...|++++|+..++++++..|+++. .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 11234566788999999999999999999998752 16889999999999999999999998876654
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=4.4e-08 Score=91.99 Aligned_cols=237 Identities=10% Similarity=0.031 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHhhCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHH
Q 008280 144 KFGKVDLAEKLFDEMPTKN-LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 222 (571)
Q Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (571)
-.|++..++.-.+.+...+ ...-.-+.++|...|++.... .-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 3566666666444443222 222233456666666665310 1123322222222 222222 556666
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008280 223 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 297 (571)
Q Consensus 223 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 297 (571)
..+..+ .++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 666554 444555567888888889999999998887432 4567777888899999999999999999774 56
Q ss_pred -----CHHHHHHHHHH--HHhcC--cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC----
Q 008280 298 -----DSITFVALLLA--CNHAG--LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF---- 363 (571)
Q Consensus 298 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---- 363 (571)
+..+...+..+ ....| +..+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35566666655 33334 889999999998754 354333334444888999999999998764 11
Q ss_pred ------CC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 364 ------KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 364 ------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.| |+.+...++......|+ +|.++++++.+..|+++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 13 45666566666666776 889999999999999874
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1.1e-08 Score=84.32 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 345 (571)
.|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|..+++++.+. .+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~---------- 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSA---------- 69 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCch----------
Confidence 34555555556666666666666555432 223444455555555555555555555555432 12223
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 346 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
..|..+...+...|++++|...++++++..|+++. .+..++.+|...|++++|.+.+
T Consensus 70 ----------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 70 ----------------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ----------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHccHHHHHHHH
Confidence 34444444444455555555555555555554444 4555555555555555555555
Q ss_pred HHHH
Q 008280 426 LSMK 429 (571)
Q Consensus 426 ~~m~ 429 (571)
+++.
T Consensus 127 ~~~~ 130 (136)
T 2fo7_A 127 QKAL 130 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=2.4e-09 Score=114.76 Aligned_cols=169 Identities=10% Similarity=-0.067 Sum_probs=136.9
Q ss_pred HhcCCHHHHHHHHHhhC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008280 244 CKCGDLEDACKLFLEIQ-----------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312 (571)
Q Consensus 244 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 312 (571)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67889999999998876 3456788888899999999999999999988753 23566788888889999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
|++++|...|++..+. .+.+...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988863 23357788889999999999999 8888876 2233 4678888999999999999999999
Q ss_pred HHHhccCCCCCchhHHHHHHHHhhccC
Q 008280 391 MNLFNLNPANAAGCYVQLANIYAAMKK 417 (571)
Q Consensus 391 ~~~~~~~p~~~~~~~~~l~~~~~~~g~ 417 (571)
+++++++|++.. ++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~-a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTT-ARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHH-HHHHHHHHTC----
T ss_pred HhhcccCcccHH-HHHHHHHHHHccCC
Confidence 999999999887 88899999877665
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=7e-09 Score=85.40 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 414 (571)
.+..++..+...|++++|.++++++ . .+.+...|..+...+...|++++|...++++++..|+++. .+..++.+|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHH
Confidence 4667778888888888888888776 1 1245678888889999999999999999999999999887 89999999999
Q ss_pred ccChhHHHHHHHHHHhCC
Q 008280 415 MKKWDDVARIRLSMKENN 432 (571)
Q Consensus 415 ~g~~~~a~~~~~~m~~~~ 432 (571)
.|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD 99 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhC
Confidence 999999999999987654
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=5.6e-09 Score=98.41 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQR-------K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDE------GMKP 297 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 297 (571)
++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|+..|++.... +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 445555555666666666555554431 1 2345666777777777777777777776553 1122
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc------CCCCC-hHhHHHHHHHHHHc------CCHHHHHHHHHhCCC
Q 008280 298 D-SITFVALLLACNHAGLVDLGIQYFDSMVNDY------GIAAK-PDHYTCMVDLLGRA------GKLVEAVDLIKKMPF 363 (571)
Q Consensus 298 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~~ 363 (571)
+ ..++..+...+...|++++|..++++..+.. ...+. ...+..+...+... ..+.++...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2 3466677778888888888888887776531 11222 22333333333322 234455555555532
Q ss_pred -CCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 364 -KPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 364 -~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
.|+ ..++..+...|...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 357888889999999999999999998764
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=1.8e-08 Score=95.72 Aligned_cols=176 Identities=10% Similarity=-0.049 Sum_probs=140.4
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHh
Q 008280 249 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 249 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 328 (571)
.+.....++.....+...+..+...+.+.|++++|+..|++..... +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4455566666665566778888888999999999999999998753 235667888889999999999999999988753
Q ss_pred cCCCCChHhHHHH-HHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC--Cch
Q 008280 329 YGIAAKPDHYTCM-VDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN--AAG 403 (571)
Q Consensus 329 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 403 (571)
.|+....... ...+.+.|+.++|++.+++. ... .+...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~- 256 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ- 256 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH-
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch-
Confidence 4554433332 33466778888888888776 222 457889999999999999999999999999999987 66
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887654
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=1.3e-09 Score=92.53 Aligned_cols=137 Identities=14% Similarity=0.068 Sum_probs=83.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH
Q 008280 276 QHGKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 276 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
..|++++|+..++..... .|+ ...+..+...|...|++++|.+.|++.++. -+.++..|..+..+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 344555555555544321 122 123344555555666666666666655542 123355666666666666666666
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHH-HHHHHhccCCCCCchhHHHHHHHHhhccC
Q 008280 355 VDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEF-AAMNLFNLNPANAAGCYVQLANIYAAMKK 417 (571)
Q Consensus 355 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 417 (571)
+..|++. ...| +..+|..+...|...|++++|.. .++++++++|+++. +|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~-~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA-VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH-HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH-HHHHHHHHHHHhCc
Confidence 6666655 2233 35677788888888888776554 45888888998887 88888888777764
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=6.7e-08 Score=87.21 Aligned_cols=172 Identities=10% Similarity=-0.051 Sum_probs=128.0
Q ss_pred HHHHHHhhC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHhH
Q 008280 252 ACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG----LVDLGIQYFDSMV 326 (571)
Q Consensus 252 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 326 (571)
|.+.|++.. ..++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444454433 3466777777777777888888888888877754 45566666666666 5 7888888888876
Q ss_pred HhcCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHhCC-CCCC---HhHHHHHHHHHHh----cCCHhHHHHHHHHHh
Q 008280 327 NDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKMP-FKPQ---PAIFGTLLSACRV----HKRLDLAEFAAMNLF 394 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 394 (571)
+. .++..+..|..+|.. .+++++|++.|++.- ..|+ +..+..|...|.. .+++++|+..|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 356677777777776 788888888888873 2232 6788888888887 789999999999998
Q ss_pred ccCCCCCchhHHHHHHHHhhc-c-----ChhHHHHHHHHHHhCCC
Q 008280 395 NLNPANAAGCYVQLANIYAAM-K-----KWDDVARIRLSMKENNV 433 (571)
Q Consensus 395 ~~~p~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 433 (571)
+. |.++. ++..|+.+|... | ++++|.++++...+.|.
T Consensus 157 ~~-~~~~~-a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGY-AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTH-HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 55566 888999999764 3 89999999998887664
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.90 E-value=3.3e-07 Score=93.74 Aligned_cols=46 Identities=4% Similarity=-0.226 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC
Q 008280 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227 (571)
Q Consensus 181 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (571)
.+..+|+++.... +.+...|...+.-+.+.|+.+.|+.+++.+++.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4556677766532 334555555555566677777777777777766
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=7.5e-08 Score=103.12 Aligned_cols=189 Identities=13% Similarity=0.019 Sum_probs=148.6
Q ss_pred hccCchHHHHHHHHHHH--------hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHc
Q 008280 209 SHLSSLQLGKQVHQLVF--------KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQH 277 (571)
Q Consensus 209 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 277 (571)
...|++++|...++.++ +.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 332 55677888999999999999999999998764 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 357 (571)
|++++|+..|++..+.. +-+...+..+..++...|++++ .+.|++..+. .+.+...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864 2255678889999999999999 9999998863 244578899999999999999999999
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHhcCC-----HhHHHHHHHHHhccCCCCCc
Q 008280 358 IKKM-PFKPQ-PAIFGTLLSACRVHKR-----LDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 358 ~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 402 (571)
|+++ ...|+ ...|..+..++...++ .+...+..+.+..+.++++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 45566 4677777777766555 23344444444455555554
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=3.7e-08 Score=88.62 Aligned_cols=128 Identities=9% Similarity=0.014 Sum_probs=98.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 349 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 349 (571)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+. -+.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 8888999999999999999988764 235678888899999999999999999999863 2445778888888887665
Q ss_pred C--HHHHHHHHHhCCCCCCH--hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 350 K--LVEAVDLIKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 350 ~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
. .+.+...++... .|+. ..+..+..++...|++++|+..|++++++.|+..
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 4 445666676663 3443 3445556667788999999999999999999753
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=2.4e-08 Score=87.20 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=52.6
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC--CchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 366 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN--AAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
+...+..+...+...|++++|+..++++++.+|+. +. .+..++.+|...|+.++|...|++..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE-VKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH-HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH-HHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 46788888888889999999999999999888864 44 78888999999999999988887654
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=6.9e-09 Score=87.98 Aligned_cols=122 Identities=14% Similarity=0.010 Sum_probs=101.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHK 381 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 381 (571)
|...+...|++++|...+..... ..|+ ...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455677899999999988764 3443 556778999999999999999999987 3334 5789999999999999
Q ss_pred CHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHH-HHHHh
Q 008280 382 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR-LSMKE 430 (571)
Q Consensus 382 ~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~m~~ 430 (571)
++++|+..|+++++++|+++. ++..++.+|.+.|++++|.+.+ ++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKD-LVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999887764 66655
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=8.7e-08 Score=92.00 Aligned_cols=219 Identities=9% Similarity=0.009 Sum_probs=156.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 008280 176 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 255 (571)
Q Consensus 176 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 255 (571)
.|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577889999998877531 111 0 11147788887777654 4578888999999998
Q ss_pred HHhhCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCcHHHHHHH
Q 008280 256 FLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPD--SITFVALLLACNHAGLVDLGIQY 321 (571)
Q Consensus 256 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 321 (571)
|.+..+ .+ ..+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887653 12 3578889999999999999999999875421 1122 3467788888888 999999999
Q ss_pred HHHhHHhcCCCC----ChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHhHHHHH
Q 008280 322 FDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEFA 389 (571)
Q Consensus 322 ~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 389 (571)
|++..+-+.-.. ...++..+...|.+.|++++|++.|++. +..++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998875321111 1467888999999999999999999887 11122 23666777778888999999999
Q ss_pred HHHHhccCCCCCchh-----HHHHHHHHhhccChhHHHH
Q 008280 390 AMNLFNLNPANAAGC-----YVQLANIYAAMKKWDDVAR 423 (571)
Q Consensus 390 ~~~~~~~~p~~~~~~-----~~~l~~~~~~~g~~~~a~~ 423 (571)
+++.+ +.|+... + ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~-~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSG-SEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTT-SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCC-CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 9997654 2 33455555 5666655554
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=3.3e-08 Score=103.83 Aligned_cols=160 Identities=13% Similarity=0.047 Sum_probs=124.9
Q ss_pred cCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 008280 246 CGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 322 (571)
Q Consensus 246 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 322 (571)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998764 357789999999999999999999999998754 335678888999999999999999999
Q ss_pred HHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhc---CCHhHHHHHHHHHhccC
Q 008280 323 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVH---KRLDLAEFAAMNLFNLN 397 (571)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 397 (571)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ... .+...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 3445788999999999999999999999887 222 3567889999999999 99999999999999999
Q ss_pred CCCCchhHHHHH
Q 008280 398 PANAAGCYVQLA 409 (571)
Q Consensus 398 p~~~~~~~~~l~ 409 (571)
|++.. .|..++
T Consensus 159 p~~~~-~~~~l~ 169 (568)
T 2vsy_A 159 VGAVE-PFAFLS 169 (568)
T ss_dssp CCCSC-HHHHTT
T ss_pred CcccC-hHHHhC
Confidence 99987 777776
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.4e-08 Score=85.86 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=84.9
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHH
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
+...+..+...+.+.|++++|+..|++. ... .+...|..+..+|...|++++|+..++++++++|+++. ++..++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR-FPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-HHHHHHHH
Confidence 4566777888899999999999999877 222 46788999999999999999999999999999999998 99999999
Q ss_pred HhhccChhHHHHHHHHHHhC
Q 008280 412 YAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 412 ~~~~g~~~~a~~~~~~m~~~ 431 (571)
|...|++++|.+.|+...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988763
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=6.9e-08 Score=101.41 Aligned_cols=147 Identities=10% Similarity=-0.041 Sum_probs=108.0
Q ss_pred cCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 008280 211 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLF 287 (571)
Q Consensus 211 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 287 (571)
.|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467889999998888764 45677888899999999999999999998764 35678889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc---CCHHHHHHHHHhC
Q 008280 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA---GKLVEAVDLIKKM 361 (571)
Q Consensus 288 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 361 (571)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988764 335678888889999999999999999998864 234577888899999999 9999999998877
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.3e-07 Score=85.00 Aligned_cols=186 Identities=12% Similarity=0.012 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008280 165 TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 243 (571)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 243 (571)
.+-.....+...|++++|+..|++.... .|+.. .+.. . .. ... ..........+...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~--~~~---------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NV--DKN---------------SEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HS--CTT---------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hh--cch---------------hhhhHHHHHHHHHHH
Confidence 3444555667778888888888777664 34322 1111 0 00 000 001112234467777
Q ss_pred HhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc--HHHH
Q 008280 244 CKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL--VDLG 318 (571)
Q Consensus 244 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a 318 (571)
.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 778888888877776652 356677777788888888888888888877653 2245566666666655443 2334
Q ss_pred HHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 008280 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLS 375 (571)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 375 (571)
...+.... ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444432 12222223344555666678888888888776 55677655554443
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=1.6e-07 Score=85.52 Aligned_cols=184 Identities=14% Similarity=0.005 Sum_probs=131.2
Q ss_pred HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CC-h---hhHHH
Q 008280 198 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK--DTTALTPLISMYCKCGDLEDACKLFLEIQR--KD-V---VTWNA 269 (571)
Q Consensus 198 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 269 (571)
...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455666777889999999999999999864211 134678889999999999999999999763 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHHhcC
Q 008280 270 MISGYAQ------------------HGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYG 330 (571)
Q Consensus 270 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 330 (571)
+..++.. .|++++|+..|+++.+. .|+.. ...... ..+ .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~------~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLV------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHH------HHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHH------HHHHHH-----
Confidence 6666654 57899999999999875 35433 221111 100 011111
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 331 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 331 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
......+...|.+.|++++|+..|+++ ...|+ ...+..+..++...|+.++|+..++++....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112235678889999999999999887 22233 256888899999999999999999999999998764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=8.5e-08 Score=83.65 Aligned_cols=158 Identities=9% Similarity=-0.008 Sum_probs=115.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H
Q 008280 234 TALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA-C 309 (571)
Q Consensus 234 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~ 309 (571)
.....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..... |+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455677788889999999999988764 466788888889999999999999998876543 344332222111 1
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHHhcCCHhH
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ---PAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~ 385 (571)
...+...++...+++..+. .+.+...+..+...|...|++++|...|+++ ...|+ ...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1222223467778877753 2335788888999999999999999999877 33443 5588889999999999999
Q ss_pred HHHHHHHHhc
Q 008280 386 AEFAAMNLFN 395 (571)
Q Consensus 386 a~~~~~~~~~ 395 (571)
|...|++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=4.7e-06 Score=78.94 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=138.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccC--chHHHHHHHHHHHhCCCCCCcchHHHHHHHH----Hhc---C
Q 008280 178 WAEDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLS--SLQLGKQVHQLVFKSPLCKDTTALTPLISMY----CKC---G 247 (571)
Q Consensus 178 ~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~---g 247 (571)
..++|++++.+++.. .|+. ..|+.--..+...+ +++++...++.++... +.+..+|+.-...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 345677777777664 3433 34455445555555 6777777777766654 44555555544444 444 6
Q ss_pred CHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc------HH
Q 008280 248 DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGE--KALRLFDKMKDEGMKPDSITFVALLLACNHAGL------VD 316 (571)
Q Consensus 248 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 316 (571)
++++++.+++.+.+ ++..+|+.-...+.+.|.++ ++++.++++.+..+. |...|..-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 77888888887763 56677877777777778777 888888888876533 66666665555555555 67
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHHhcCCHhHHHHHH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE-AVDLIKKM-PF----KPQPAIFGTLLSACRVHKRLDLAEFAA 390 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (571)
++.+.+..++.. .+-+...|+.+...+.+.|+..+ +.++.++. .. ..++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 777777777653 34456677777777777776433 33455544 11 234566667777777777777777777
Q ss_pred HHHhc-cCCCCCc
Q 008280 391 MNLFN-LNPANAA 402 (571)
Q Consensus 391 ~~~~~-~~p~~~~ 402 (571)
+.+.+ .+|....
T Consensus 282 ~~l~~~~Dpir~~ 294 (306)
T 3dra_A 282 DLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHHTTCGGGHH
T ss_pred HHHHhccChHHHH
Confidence 77764 6776544
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=3.4e-08 Score=83.46 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=88.5
Q ss_pred CCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHH
Q 008280 331 IAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407 (571)
Q Consensus 331 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 407 (571)
+.|+ ...+..+...+.+.|++++|++.|++. ... .+...|..+..+|...|++++|+..|+++++++|+++. +|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~-~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT-PVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH-HHHH
Confidence 4444 567778888899999999999999887 223 45789999999999999999999999999999999999 9999
Q ss_pred HHHHHhhccChhHHHHHHHHHHhCC
Q 008280 408 LANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
++.+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988744
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=1.6e-06 Score=82.18 Aligned_cols=213 Identities=14% Similarity=0.135 Sum_probs=170.9
Q ss_pred chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC--CHHHHHHHHHhhCC---CChhhHHHHHHHH----HHc---CCh
Q 008280 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG--DLEDACKLFLEIQR---KDVVTWNAMISGY----AQH---GKG 280 (571)
Q Consensus 213 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 280 (571)
..++|......++..+ +.+..+|+.-...+...| +++++++.++.+.. ++..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888876 556777888888888888 99999999998764 4677888776666 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH--HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCC------HH
Q 008280 281 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK------LV 352 (571)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 352 (571)
++++.+++++.+.. +-|..+|..-.....+.|.++ ++.+++..+.+. -+-+...|+.-..++.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999865 337778887777788888888 999999999874 34567777777777777776 88
Q ss_pred HHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhH-HHHHHHHHhccC---CCCCchhHHHHHHHHhhccChhHHHHHHH
Q 008280 353 EAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDL-AEFAAMNLFNLN---PANAAGCYVQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 353 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 426 (571)
++++.++++ . ..-|...|+.+...+...|+... ...+.+++.+++ |.++. ++..++.+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF-ALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Confidence 999988776 2 23568899999999988888544 566888887776 77777 89999999999999999999999
Q ss_pred HHHh
Q 008280 427 SMKE 430 (571)
Q Consensus 427 ~m~~ 430 (571)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=3.2e-07 Score=87.03 Aligned_cols=157 Identities=10% Similarity=0.016 Sum_probs=73.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC--CChhhH-HHHHHHHHHc
Q 008280 201 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTW-NAMISGYAQH 277 (571)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~ 277 (571)
+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+.... ......+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3334444444455555555555544443 33344555555556666666666666655543 222211 1112223444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 357 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 357 (571)
++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++.+|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 55555555555554432 22334455555555555555555555555554311111133444455555555555444444
Q ss_pred HH
Q 008280 358 IK 359 (571)
Q Consensus 358 ~~ 359 (571)
|+
T Consensus 278 ~r 279 (287)
T 3qou_A 278 YR 279 (287)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=6.9e-07 Score=80.29 Aligned_cols=145 Identities=11% Similarity=0.011 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 008280 237 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316 (571)
Q Consensus 237 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 316 (571)
..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3456666777777777777777776677777777777777777777777777766543 234556666666777777777
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+|...|+...+.. +.+.... +...| +...|+ ...|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~--~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQL--RGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTT--TTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777666521 1111000 00000 012222 35777788888888888888888888888
Q ss_pred cCCCCC
Q 008280 396 LNPANA 401 (571)
Q Consensus 396 ~~p~~~ 401 (571)
..|++.
T Consensus 150 ~~p~~~ 155 (213)
T 1hh8_A 150 MKSEPR 155 (213)
T ss_dssp TCCSGG
T ss_pred cCcccc
Confidence 888753
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=1.2e-07 Score=79.43 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=83.7
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...+..+...+.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|+++. .+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR-FPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-HHHHHHHHH
Confidence 456667778888999999999999877 222 46788899999999999999999999999999999998 999999999
Q ss_pred hhccChhHHHHHHHHHHhCC
Q 008280 413 AAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~~~ 432 (571)
...|++++|.+.++...+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=3.5e-07 Score=82.27 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHh
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRV 379 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 379 (571)
+..+...+...|++++|...|++. ++|+...+..+...|.+.|++++|++.|++. .. +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 444556667778888888777755 2456777778888888888888888887766 11 2356788888889999
Q ss_pred cCCHhHHHHHHHHHhccCCCCC----------------chhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 380 HKRLDLAEFAAMNLFNLNPANA----------------AGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
.|++++|+..++++++..|++. . ++..++.+|.+.|++++|.+.++...+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE-VLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH-HHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999888776 6 899999999999999999999999887543
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=9.5e-07 Score=79.55 Aligned_cols=169 Identities=9% Similarity=0.038 Sum_probs=105.8
Q ss_pred HHHHHhhCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----chHHHHHHHHHHH
Q 008280 151 AEKLFDEMPT-KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS----SLQLGKQVHQLVF 225 (571)
Q Consensus 151 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 225 (571)
|.+.|++..+ .++.++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344443332 456666777777777777777777777776654 34455555555555 5 6777777777776
Q ss_pred hCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhhCCCC-----hhhHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 008280 226 KSPLCKDTTALTPLISMYCK----CGDLEDACKLFLEIQRKD-----VVTWNAMISGYAQ----HGKGEKALRLFDKMKD 292 (571)
Q Consensus 226 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 292 (571)
+.| +...+..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .++.++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 44566666777766 667777777777766533 4667777777776 6677777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhc-C-----cHHHHHHHHHHhHHh
Q 008280 293 EGMKPDSITFVALLLACNHA-G-----LVDLGIQYFDSMVND 328 (571)
Q Consensus 293 ~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 328 (571)
. .++...+..|...|... | +.++|..+|+...+.
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4 12333455555555432 2 677777777776653
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=3.8e-07 Score=86.78 Aligned_cols=164 Identities=6% Similarity=-0.038 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCC--CCC--h
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-----ITFVALLLACNHAGLVDLGIQYFDSMVNDYGI--AAK--P 335 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~--~ 335 (571)
..+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+++..+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999887765322111 12334556677888999999999887643111 111 4
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC------C
Q 008280 336 DHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ-----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA------N 400 (571)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 400 (571)
.+++.+...|...|++++|++.|++. ...|+ ..++..+...|...|++++|+..++++++..++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999998776 11122 258888999999999999999999999875432 1
Q ss_pred CchhHHHHHHHHhhccChhHH-HHHHHHHH
Q 008280 401 AAGCYVQLANIYAAMKKWDDV-ARIRLSMK 429 (571)
Q Consensus 401 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 429 (571)
.. +|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~-~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQ-LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HH-HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33 788999999999999999 77677654
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=9.9e-08 Score=78.01 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=56.2
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 336 DHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
..+......|.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|+++. +|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-GYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHH
Confidence 34445555566666666666666554 112 23456666666666666666666666666666666655 6666666666
Q ss_pred hccChhHHHHHHHHHHh
Q 008280 414 AMKKWDDVARIRLSMKE 430 (571)
Q Consensus 414 ~~g~~~~a~~~~~~m~~ 430 (571)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666665554
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=2e-07 Score=76.17 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=89.4
Q ss_pred CCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHH
Q 008280 295 MKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFG 371 (571)
Q Consensus 295 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 371 (571)
+.|+. ..+......+.+.|++++|.+.|++.++. .+.+...|..+..+|.+.|++++|++.|++. ... .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35666777788888888888888887763 3445778888888888888888888888876 222 3467899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHH
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
.+..++...|++++|+..|+++++++|+++. ++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~-a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEE-AREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH-HHHHHHHh
Confidence 9999999999999999999999999999987 77777654
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=1.9e-06 Score=81.87 Aligned_cols=160 Identities=7% Similarity=-0.018 Sum_probs=115.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHH
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDEGM-KPDSI----TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTC 340 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 340 (571)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+...+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46667788888888888888776321 22211 2334556667778889999988888763111222 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-------CCC-CC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC------CchhH
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM-------PFK-PQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCY 405 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~-------~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 405 (571)
+...|...|++++|++.|+++ +.. +. ..++..+...|...|++++|+..+++++++.+.. .. +|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~-~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ-LY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH-HH
Confidence 888899999999888888776 111 11 2477888999999999999999999998754322 34 78
Q ss_pred HHHHHHHhhccC-hhHHHHHHHHHHh
Q 008280 406 VQLANIYAAMKK-WDDVARIRLSMKE 430 (571)
Q Consensus 406 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 430 (571)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887653
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=8e-08 Score=90.90 Aligned_cols=191 Identities=12% Similarity=-0.021 Sum_probs=122.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 309 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 309 (571)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556677777778888888888776542 366777788888888888888888888877643 23455677777888
Q ss_pred HhcCcHHHHHHHHHHhHHhcCCCCCh-HhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 008280 310 NHAGLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 388 (571)
Q Consensus 310 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 388 (571)
...|++++|...|....+. .|+. ..+...+....+......... .......++......+. .+ ..|+.++|+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHH
Confidence 8888888888888777653 2211 111111111111111111111 12222233444433332 22 3688999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhhc-cChhHHHHHHHHHHhC
Q 008280 389 AAMNLFNLNPANAAGCYVQLANIYAAM-KKWDDVARIRLSMKEN 431 (571)
Q Consensus 389 ~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 431 (571)
.++++++.+|++.. ....+...+.+. +.+++|.++|....+.
T Consensus 157 ~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGH-IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHH-HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998766 666777777766 7889999999888653
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=3.7e-07 Score=78.25 Aligned_cols=126 Identities=7% Similarity=-0.040 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACR 378 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 378 (571)
.+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|++.+++. .. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555566667777777777777776653 2334667777777788888888888877765 11 235678888888999
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCchhHHHHHH--HHhhccChhHHHHHHHHHH
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN--IYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 429 (571)
..|++++|...++++++..|++.. .+..+.. .+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999998876 7744444 4888899999999987664
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=4.3e-07 Score=73.29 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSAC 377 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 377 (571)
..+..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45556666667777777777777766653 2334566677777777777777777777665 1 124567788888888
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhcc
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 416 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 416 (571)
...|++++|...++++++..|+++. .+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAE-AKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHhcc
Confidence 8999999999999999999998877 7888887776544
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=4e-07 Score=79.29 Aligned_cols=119 Identities=5% Similarity=0.074 Sum_probs=75.4
Q ss_pred hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHH-HHhcCCH--hH
Q 008280 311 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSA-CRVHKRL--DL 385 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~g~~--~~ 385 (571)
..|++++|...++...+. .+.+...+..+...|...|++++|.+.|++. ... .+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555566666555542 2334556666666666666666666666655 111 245566666666 6677777 77
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 386 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
|+..++++++.+|+++. .+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEIT-ALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888777787776 77778888888888888888877776644
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=4.6e-07 Score=73.82 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSAC 377 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 377 (571)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45555666677777777777777776653 2335666777777777778888887777665 112 3467788888888
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccCh
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 418 (571)
...|++++|...++++++..|+++. .+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNET-YKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHhcC
Confidence 9999999999999999999998877 888888888888765
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=4.4e-07 Score=74.39 Aligned_cols=115 Identities=8% Similarity=-0.013 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSAC 377 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 377 (571)
..+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|++.+++. .. ..+...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555555555556666666665555431 2224555555666666666666666666554 11 23456777778888
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccC
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 417 (571)
...|++++|+..++++++.+|++.. .+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKE-AADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTH-HHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcC
Confidence 8888888888888888888888877 78888888776653
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=5.6e-06 Score=78.62 Aligned_cols=157 Identities=11% Similarity=0.005 Sum_probs=117.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCC---h------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 008280 239 LISMYCKCGDLEDACKLFLEIQRKD---V------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PD----SITFVA 304 (571)
Q Consensus 239 li~~y~~~g~~~~A~~~~~~~~~~~---~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 304 (571)
.+..+.+.|++++|...+++..+.. . ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998876421 1 12334666677778999999999998874322 23 236888
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhc----CCCCC-hHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HhHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDY----GIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ-PAIFG 371 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 371 (571)
+..+|...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999887421 11122 347788999999999999999998876 22222 56888
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHhc
Q 008280 372 TLLSACRVHKR-LDLAEFAAMNLFN 395 (571)
Q Consensus 372 ~l~~~~~~~g~-~~~a~~~~~~~~~ 395 (571)
.+..++...|+ +++|...+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999995 6999999998865
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=6.8e-07 Score=85.69 Aligned_cols=198 Identities=9% Similarity=-0.010 Sum_probs=148.5
Q ss_pred ccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008280 210 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 289 (571)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 289 (571)
..|++++|..++++..+... .. .+...+++++|...|++. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35778889999888776421 11 111158899999988764 5678899999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCC--C--ChHhHHHHHHHHHHcCCHHHHHHHHHh
Q 008280 290 MKDE----GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA--A--KPDHYTCMVDLLGRAGKLVEAVDLIKK 360 (571)
Q Consensus 290 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 360 (571)
..+. +-.+. ..+|..+...|...|++++|...|++..+-+.-. + ...++..+..+|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7543 21111 3478888899999999999999998876532111 1 14577888899988 999999999987
Q ss_pred C----CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc-----hhHHHHHHHHhhccChhHHHHHHHH
Q 008280 361 M----PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA-----GCYVQLANIYAAMKKWDDVARIRLS 427 (571)
Q Consensus 361 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 427 (571)
. +...+ ..++..+...+...|++++|+..+++++++.|+... ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11111 457888899999999999999999999987654431 1566778888889999999999998
Q ss_pred HH
Q 008280 428 MK 429 (571)
Q Consensus 428 m~ 429 (571)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=6.5e-07 Score=86.98 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=80.7
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...|..+..+|.+.|++++|++.+++. ... .+...|..+..+|...|++++|+..|+++++++|++.. ++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA-AKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHH
Confidence 467788888888999999999888877 222 35788999999999999999999999999999999988 999999999
Q ss_pred hhccChhHH-HHHHHHHH
Q 008280 413 AAMKKWDDV-ARIRLSMK 429 (571)
Q Consensus 413 ~~~g~~~~a-~~~~~~m~ 429 (571)
...|++++| .+.++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998 44666664
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.9e-07 Score=86.53 Aligned_cols=135 Identities=13% Similarity=-0.050 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC--hHhHHHHHHHH
Q 008280 268 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHYTCMVDLL 345 (571)
Q Consensus 268 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 345 (571)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677777888888777776553 344444445555777788888888888755331 1 111 23566778888
Q ss_pred HHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHH
Q 008280 346 GRAGKLVEAVDLIKKM---PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 408 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l 408 (571)
.+.|++++|++.|++. +..|. ...+..+..++...|+.++|...|++++..+|+ .. ....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~-~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK-VAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH-HHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH-HHHHH
Confidence 8888888888888877 22143 246667777888889999999999999888887 54 44443
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=8e-05 Score=76.07 Aligned_cols=350 Identities=10% Similarity=0.030 Sum_probs=214.5
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcCCC-CHHHHHHHHhhCC------CCChhhHHHHHH
Q 008280 8 NWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSD-DVVAAFDFFQRLP------IKDTASWNTMIS 78 (571)
Q Consensus 8 ~~~~l~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~g-~~~~A~~~~~~m~------~~d~~~~~~li~ 78 (571)
+|...+..+-. + +.+.+.++|++... |++..|..-+....+. + ..+....+|+... ..+...|...+.
T Consensus 17 vyer~l~~~P~-~-~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-K-DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-SQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-T-CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-C----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-C-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 45666666654 5 89999999998775 8999999988877666 5 3345566666532 246678888887
Q ss_pred HHHc----CCCHHHHHHHHhhCCC-CCcchHHHHHHHHHH-----------------cCChHHHHHHHhhCC----CCCh
Q 008280 79 GFVQ----KKNMAKARDLFLAMPE-KNSVSWSAMISGYIE-----------------CGQLDKAVELFKVAP----VKSV 132 (571)
Q Consensus 79 ~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~-----------------~g~~~~A~~~~~~~~----~~~~ 132 (571)
.+.. +|+.+.+.++|++... |. ..+..+-..|.. .+.+..|+.+++.+. ..+.
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6643 4678889999988754 21 111121111111 122333444433322 1234
Q ss_pred hHHHHHHHHHHhcC--C-----HHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 008280 133 VAWTAMISGYMKFG--K-----VDLAEKLFDEMPT---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202 (571)
Q Consensus 133 ~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 202 (571)
..|...++.-...+ - .+.+..+|++... .+...|-..+.-+.+.|+.++|..+|.+.... |....+.
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence 46666665533221 1 2345667777653 45678998999999999999999999999986 5444332
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHH
Q 008280 203 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 282 (571)
Q Consensus 203 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 282 (571)
. .++.....+. +++.+. ..+.... .+.+.. .........|...+....+.+..+.
T Consensus 250 ~---~y~~~~e~~~---~~~~l~---------------~~~~~~~-~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 250 L---YYGLVMDEEA---VYGDLK---------------RKYSMGE-AESAEK---VFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp H---HHHHHTTCTH---HHHHHH---------------HHTC--------------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred H---HHHhhcchhH---HHHHHH---------------HHHHhhc-cchhhh---hcccccHHHHHHHHHHHHHcCCHHH
Confidence 2 1221111111 122111 1110000 000000 0000123457777777777788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 283 ALRLFDKMKDEGMKPDSITFVALLLACN-HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 283 A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
|..+|++. .. ..++...|......-. ..++.+.|+.+|+...+.+ +.++..+...++...+.|+.+.|..+|+++
T Consensus 305 AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 305 FRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 32 1234444443222212 2346999999999998864 334556777888889999999999999998
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 362 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 362 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
. .....|...+.--..+|+.+.+..++++...
T Consensus 381 ~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 E--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 4678899999888899999999999988864
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=4.5e-06 Score=79.27 Aligned_cols=161 Identities=10% Similarity=0.003 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhCC--C-Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQR--K-DV------VTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KPD--SI 300 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 300 (571)
.+...+..|...|++++|.+.++...+ + .. ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334466778888999999888875542 1 11 2234456667778899999999988765321 122 34
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-----hHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-H
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ-P 367 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 367 (571)
+++.+...|...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|++.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999888732111222 257888889999999999999998876 11111 5
Q ss_pred hHHHHHHHHHHhcCCHhHH-HHHHHHHhc
Q 008280 368 AIFGTLLSACRVHKRLDLA-EFAAMNLFN 395 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 395 (571)
.+|..+...|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777887755
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.3e-07 Score=73.01 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=80.0
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...+..+...+.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|+++. ++..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR-AYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Confidence 345666777788888888888888776 222 35678888888999999999999999999999999888 999999999
Q ss_pred hhccChhHHHHHHHHHHhCC
Q 008280 413 AAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~~~ 432 (571)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999998877643
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=7e-07 Score=70.50 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=79.2
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC--CCchhHHHHH
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA--NAAGCYVQLA 409 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~~l~ 409 (571)
+...+..+...+.+.|++++|...|++. .. ..+...|..+...+...|++++|...++++++..|+ +.. .+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD-VWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-HHHHHH
Confidence 3556667777788888888888888776 11 235677888888888899999999999999998888 777 888999
Q ss_pred HHHhhc-cChhHHHHHHHHHHhCCC
Q 008280 410 NIYAAM-KKWDDVARIRLSMKENNV 433 (571)
Q Consensus 410 ~~~~~~-g~~~~a~~~~~~m~~~~~ 433 (571)
.+|... |++++|.+.++...+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999988876554
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=3e-06 Score=78.49 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=136.6
Q ss_pred hcCCHHHHHHHHHhhCC---CChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCH---------------
Q 008280 245 KCGDLEDACKLFLEIQR---KDVVTWNAM-------ISGYAQHGKGEKALRLFDKMKDEGMKPDS--------------- 299 (571)
Q Consensus 245 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 299 (571)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 47888999999988764 345678877 4566666666666665555433 23321
Q ss_pred -------HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----h
Q 008280 300 -------ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP----A 368 (571)
Q Consensus 300 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 368 (571)
.....+..++...|++++|.+.|..+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12334567788999999999999988642 354336667777899999999999999977433433 3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccC--CC-CCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLN--PA-NAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
.+..+..++...|++++|+..|+++..-. |. .+. ....++.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d-a~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA-IAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888899999999999999999997533 54 334 77899999999999999999999998743
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.3e-06 Score=77.62 Aligned_cols=116 Identities=14% Similarity=0.040 Sum_probs=55.1
Q ss_pred hcCCHHHHHH---HHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHH
Q 008280 245 KCGDLEDACK---LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKP-DSITFVALLLACNHAGLVD 316 (571)
Q Consensus 245 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 316 (571)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3556666666 333322223445666666666666666666666665431 1111 1224445555566666666
Q ss_pred HHHHHHHHhHHhcCCCC-C----hHhHHHHHHHHHHcCCHHHHHHHHHh
Q 008280 317 LGIQYFDSMVNDYGIAA-K----PDHYTCMVDLLGRAGKLVEAVDLIKK 360 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~ 360 (571)
+|...+++..+...-.+ + ...+..+...+...|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655443211111 1 22344444555555555555554444
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=6.5e-07 Score=72.48 Aligned_cols=95 Identities=14% Similarity=-0.008 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 414 (571)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++. ++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-VHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH
Confidence 4556778888999999999999887 2233 5788889999999999999999999999999999988 99999999999
Q ss_pred ccChhHHHHHHHHHHhCC
Q 008280 415 MKKWDDVARIRLSMKENN 432 (571)
Q Consensus 415 ~g~~~~a~~~~~~m~~~~ 432 (571)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=3.3e-06 Score=74.93 Aligned_cols=155 Identities=12% Similarity=-0.028 Sum_probs=114.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc---CCCC-ChHhHHHHHHHHHHcCC
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY---GIAA-KPDHYTCMVDLLGRAGK 350 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~ 350 (571)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 222345678888889999999999999998877521 1222 25578888999999999
Q ss_pred HHHHHHHHHhC----CCCC-C----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC--CC---chhHHHHHHHHhhcc
Q 008280 351 LVEAVDLIKKM----PFKP-Q----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA--NA---AGCYVQLANIYAAMK 416 (571)
Q Consensus 351 ~~~A~~~~~~~----~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~---~~~~~~l~~~~~~~g 416 (571)
+++|.+.+++. ...+ + ...+..+...+...|++++|...++++++..+. ++ ..++..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999998876 1112 2 346778888899999999999999999764321 11 113578999999999
Q ss_pred ChhHHHHHHHHHHh
Q 008280 417 KWDDVARIRLSMKE 430 (571)
Q Consensus 417 ~~~~a~~~~~~m~~ 430 (571)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=8.7e-05 Score=71.07 Aligned_cols=173 Identities=9% Similarity=0.018 Sum_probs=107.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-C-CH
Q 008280 173 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-G-DL 249 (571)
Q Consensus 173 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~ 249 (571)
....+..++|++++.+++... +-+...|+.--..+...+ .++++..+++.++... +.+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334445566777777777642 223334454444455555 4777777777777654 45566666665555555 5 77
Q ss_pred HHHHHHHHhhCCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc----
Q 008280 250 EDACKLFLEIQRK---DVVTWNAMISGYAQHGKGE--------KALRLFDKMKDEGMKPDSITFVALLLACNHAGL---- 314 (571)
Q Consensus 250 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 314 (571)
++++++++++.+. |..+|+--...+.+.|.++ ++++.++++.+..+ -|...|+.......+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 7888888877753 5566776666665555555 78888888877653 366677766666666654
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCC
Q 008280 315 ---VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 350 (571)
Q Consensus 315 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 350 (571)
++++.+++.+.+.. .+-|...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56777777766652 34456666666666666554
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=1.8e-06 Score=74.99 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=93.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH-HHHcCCH--
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL-LGRAGKL-- 351 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 351 (571)
...|++++|+..|++..... +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34677778888888776653 335667777888888888888888888887763 23456677777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 352 VEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 352 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
++|...++++ ...| +...|..+...+...|++++|...++++++..|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888776 2223 4678888889999999999999999999999998865
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=3.7e-06 Score=66.92 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACR 378 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 378 (571)
.+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|.+.+++. ... .+...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555666666666666665542 2234555566666666666666666666554 112 24566777777777
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCchhHHHHHHH
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
..|++++|...++++++.+|+++. .+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQ-LKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHh
Confidence 778888888888888887777765 55555544
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=1.8e-06 Score=71.30 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=81.6
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHH
Q 008280 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410 (571)
Q Consensus 333 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~ 410 (571)
.+...+..+...+...|++++|+..|++. ... .+...|..+...+...|++++|+..++++++++|+++. ++..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK-AHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH-HHHHHHH
Confidence 45667777888888888888888888776 222 34678888888899999999999999999999999888 8999999
Q ss_pred HHhhccChhHHHHHHHHHHhCC
Q 008280 411 IYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 411 ~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999998887543
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=5.6e-07 Score=75.84 Aligned_cols=101 Identities=10% Similarity=-0.038 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC 377 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 377 (571)
..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|++.|++. ...| ++..|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35556667777888888888888877653 2445777777888888888888888888776 2223 457788888889
Q ss_pred HhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 378 RVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
...|++++|+..|++++++.|+++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 9999999999999999999988775
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=3.1e-06 Score=72.58 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++. .|..++.+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK-AWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 445555666666666666666666655 1122 4566667777777777777777777777777777766 777777777
Q ss_pred hhccChhHHHHHHHHHHh
Q 008280 413 AAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~ 430 (571)
...|++++|.+.+++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 777777777777776655
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=2.2e-06 Score=76.12 Aligned_cols=168 Identities=9% Similarity=-0.065 Sum_probs=100.1
Q ss_pred HHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 008280 242 MYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 318 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 318 (571)
.....|+++++.+.|+.-.. .....|..+...+...|++++|+..|++..... |+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH
Confidence 33445566666555553322 134456666777777777777777777776632 211100000 00000
Q ss_pred HHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
. . ......+..+..+|.+.|++++|+..+++. ... .+...+..+..++...|++++|+..+++++++
T Consensus 83 ~---~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 0 001356667778888888888888888776 222 35678888999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhccChhHHH-HHHHHHHhC
Q 008280 397 NPANAAGCYVQLANIYAAMKKWDDVA-RIRLSMKEN 431 (571)
Q Consensus 397 ~p~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 431 (571)
+|+++. ++..+..++...|+.+++. ..++.|...
T Consensus 152 ~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLD-IRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHH-HHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999988 9999999999888888877 455555443
No 149
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=4.6e-06 Score=70.25 Aligned_cols=104 Identities=9% Similarity=-0.078 Sum_probs=85.6
Q ss_pred CCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 008280 296 KPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGT 372 (571)
Q Consensus 296 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 372 (571)
.|+. ..+..+...+.+.|++++|...|+.+.+. -+.++..|..+..+|.+.|++++|++.|++. ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4443 36777778889999999999999998863 3445888889999999999999999999887 2233 4678889
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
+..+|...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998753
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=4.9e-06 Score=71.06 Aligned_cols=128 Identities=11% Similarity=0.011 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 344 (571)
..|..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345566666677777777777777766543 224556666666777777777777777776653 23346666777777
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHH--HHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 345 LGRAGKLVEAVDLIKKM-PFKP-QPAIF--GTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
|.+.|++++|.+.|++. ...| +...+ ..++..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777665 1112 33344 3333335667777777777766543
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.38 E-value=7.1e-05 Score=71.30 Aligned_cols=229 Identities=11% Similarity=0.060 Sum_probs=132.1
Q ss_pred HcCChh-HHHHHHHHHHHCCCCCCHhH-HHHHHHHHhccCc----------hHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008280 175 ENSWAE-DGLKLLRMMIGLGIRPNASS-LSSVLLGCSHLSS----------LQLGKQVHQLVFKSPLCKDTTALTPLISM 242 (571)
Q Consensus 175 ~~g~~~-~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 242 (571)
+.|.++ +|++++..+... .|+..| |+.--..+...+. ++++..++..++... +.+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445544 577777777654 343332 3322222221111 456666666666654 4566667666666
Q ss_pred HHhcC--CHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 008280 243 YCKCG--DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHA---- 312 (571)
Q Consensus 243 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---- 312 (571)
+.+.| .+++++.+++.+.+ +|..+|+.-.......|. ++++++.+.++.+..+ -|...|+.......+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 66666 37788888777763 466777777777777777 4788888888877653 3566666555444443
Q ss_pred ----------CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHhHH
Q 008280 313 ----------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA-----------GKLVEAVDLIKKM-PFKPQPAIF 370 (571)
Q Consensus 313 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~ 370 (571)
+.++++.+++...+.. .+-|...|+.+--.+.+. +.++++++.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 4566777777776653 344566666555555444 3466666666665 233443 33
Q ss_pred HHHHHHH-----HhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHH
Q 008280 371 GTLLSAC-----RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 371 ~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
..+..+. ...|..++....+.++.+++|.... -|..|...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~-~y~d~~~~ 318 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH-HHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh-HHHHHHHH
Confidence 3222211 1345666777777777777776654 55444433
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=2.9e-06 Score=67.51 Aligned_cols=98 Identities=9% Similarity=0.092 Sum_probs=86.6
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHH
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 411 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~ 411 (571)
....+..+...+...|++++|.+.|++. .. +.+...|..+...+...|++++|...++++++..|+++. .+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK-GYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-HHHHHHHH
Confidence 3556778889999999999999999987 22 246788899999999999999999999999999999988 99999999
Q ss_pred HhhccChhHHHHHHHHHHhCC
Q 008280 412 YAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 412 ~~~~g~~~~a~~~~~~m~~~~ 432 (571)
|...|++++|.+.++...+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999887643
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.35 E-value=2.6e-06 Score=69.60 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=88.4
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHH
Q 008280 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 409 (571)
Q Consensus 332 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~ 409 (571)
+.+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++..|+++. .+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK-GYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH-HHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH-HHHHHH
Confidence 344677888999999999999999999987 3334 5788999999999999999999999999999999988 999999
Q ss_pred HHHhhccChhHHHHHHHHHHhC
Q 008280 410 NIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
.+|...|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=3.2e-06 Score=67.98 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=86.5
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|+++. ++..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-AWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH-HHHHHHHHH
Confidence 567888899999999999999999887 2 2245788999999999999999999999999999999887 999999999
Q ss_pred hhccChhHHHHHHHHHHhCC
Q 008280 413 AAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 413 ~~~g~~~~a~~~~~~m~~~~ 432 (571)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=2.8e-06 Score=70.83 Aligned_cols=100 Identities=16% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACR 378 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 378 (571)
.+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|+..|++. ... .++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455566677778888888888777653 2345667777778888888888888888776 122 34567778888888
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCc
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
..|++++|+..+++++++.|+++.
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcc
Confidence 999999999999999998888775
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.35 E-value=1.5e-06 Score=82.05 Aligned_cols=188 Identities=7% Similarity=-0.048 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008280 163 LVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 242 (571)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 242 (571)
...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655532 2244455555555666666666666666666553 3445566667777
Q ss_pred HHhcCCHHHHHHHHHhhCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 008280 243 YCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 243 y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 319 (571)
|.+.|++++|...|++..+. +...+...+....+. .++.. +.........++..... .+..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~-~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHS-YLTRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHH-HHHHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHH-HHHHH-HHHHHHHHH
Confidence 77777777777777665421 111111111111111 11111 11122222333333322 22222 257888888
Q ss_pred HHHHHhHHhcCCCCC-hHhHHHHHHHHHHc-CCHHHHHHHHHhC
Q 008280 320 QYFDSMVNDYGIAAK-PDHYTCMVDLLGRA-GKLVEAVDLIKKM 361 (571)
Q Consensus 320 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~~ 361 (571)
+.++...+ ..|+ ......+...+.+. +.+++|.++|+++
T Consensus 156 ~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 156 EECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88877664 3444 33444555555555 6788889999877
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.33 E-value=4.7e-05 Score=72.93 Aligned_cols=214 Identities=11% Similarity=0.065 Sum_probs=156.3
Q ss_pred CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHhhCC---CChhhHHHHHHHHHHc-C-ChHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-DLEDACKLFLEIQR---KDVVTWNAMISGYAQH-G-KGEKALR 285 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 285 (571)
+..++|..+.+.++... +.+..+|+.-...+...| .+++++++++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34467888888888876 556777888888888888 59999999998874 4677898888888777 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH--------HHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCC-------
Q 008280 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVD--------LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK------- 350 (571)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 350 (571)
+++++.+.. +-|..+|..-.....+.|.++ ++.+++.++++. .+-+...|+....++.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 999998764 336677776655555555555 889999998874 35567788888888888776
Q ss_pred HHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCH--------------------hHHHHHHHHHhccC------CCCCc
Q 008280 351 LVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRL--------------------DLAEFAAMNLFNLN------PANAA 402 (571)
Q Consensus 351 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 402 (571)
++++++.++++ . ..-|...|+.+-..+...|+. .........+.... +..+.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 2 224678998888888777664 22333333333322 34444
Q ss_pred hhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 403 GCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 403 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+...|+++|...|+.++|.++++.+.+
T Consensus 304 -al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 -ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 777999999999999999999999864
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=9.7e-06 Score=67.58 Aligned_cols=109 Identities=14% Similarity=-0.031 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHH
Q 008280 300 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTL 373 (571)
Q Consensus 300 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l 373 (571)
..+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|++.+++. ... .+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444445555555555555555555543 2333 445555666666666666666666554 112 245667777
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
..++...|++++|...++++++.+|++.. .+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKV-FQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHH
Confidence 77788888888888888888888887765 555555544
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=5.5e-06 Score=70.95 Aligned_cols=109 Identities=11% Similarity=-0.059 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 008280 299 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSA 376 (571)
Q Consensus 299 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 376 (571)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666677777788888888888777753 2335677788888888888888888888776 2223 47788999999
Q ss_pred HHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHH
Q 008280 377 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 410 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~ 410 (571)
+...|++++|+..|+++++++|++.. .+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH-HHHHHHH
Confidence 99999999999999999999999987 6655443
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.1e-06 Score=68.07 Aligned_cols=108 Identities=9% Similarity=-0.080 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 378 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 378 (571)
.+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666666777777666666552 2334566666777777777777777777665 2223 4567777888888
Q ss_pred hcCCHhHHHHHHHHHhccC------CCCCchhHHHHHHH
Q 008280 379 VHKRLDLAEFAAMNLFNLN------PANAAGCYVQLANI 411 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~~l~~~ 411 (571)
..|++++|+..++++++++ |++.. ....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~-~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSARE-IDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHH-HHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHH-HHHHHHHH
Confidence 8888888888888888877 76655 55555444
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=2.3e-06 Score=69.70 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H---hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC---CchhHHHHHHH
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKM-PFKPQ-P---AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLANI 411 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~~l~~~ 411 (571)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +. ++..++.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG-GLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-HHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH-HHHHHHHH
Confidence 4455666777777777777665 11122 2 366667777778888888888888888877777 44 67778888
Q ss_pred HhhccChhHHHHHHHHHHhC
Q 008280 412 YAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 412 ~~~~g~~~~a~~~~~~m~~~ 431 (571)
|...|++++|...++...+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888777653
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=4.8e-06 Score=69.53 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=88.4
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHH
Q 008280 333 AKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 407 (571)
Q Consensus 333 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~ 407 (571)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++. .+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK-ALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH-HHHH
Confidence 35677888999999999999999999987 45576 678888999999999999999999999999999988 9999
Q ss_pred HHHHHhhccChhHHHHHHHHHHhC
Q 008280 408 LANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
++.+|...|++++|.+.+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999988764
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=7.9e-06 Score=67.30 Aligned_cols=100 Identities=7% Similarity=-0.119 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHH
Q 008280 298 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLS 375 (571)
Q Consensus 298 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~ 375 (571)
+...+..+...+...|++++|...|....+. .+.+...+..+..+|...|++++|...+++. ... .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666677777777777777766653 2334566677777777777777777777665 112 34667777888
Q ss_pred HHHhcCCHhHHHHHHHHHhccCCC
Q 008280 376 ACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
++...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887776
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=4.3e-06 Score=68.18 Aligned_cols=95 Identities=6% Similarity=-0.036 Sum_probs=77.1
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc------hhHHH
Q 008280 336 DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA------GCYVQ 407 (571)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~~ 407 (571)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++.. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35566788888888888888888876 2233 4678888999999999999999999999998887643 25677
Q ss_pred HHHHHhhccChhHHHHHHHHHHh
Q 008280 408 LANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
++.+|...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999987765
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.24 E-value=2e-05 Score=63.86 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 345 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 345 (571)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+. .+.+...+..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 44445555555555555555555554432 223444555555555555555555555555442 122344555555555
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 008280 346 GRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKR 382 (571)
Q Consensus 346 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 382 (571)
.+.|++++|.+.|++. ...| +...+..+...+...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5556666655555544 1112 34445555555544443
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=1.3e-05 Score=81.39 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=76.4
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...|..+..+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|+..|+++++++|++.. ++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~-a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA-ARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 467788888899999999999998887 222 35788999999999999999999999999999999998 999999999
Q ss_pred hhccChhHHHH-HHHHHHh
Q 008280 413 AAMKKWDDVAR-IRLSMKE 430 (571)
Q Consensus 413 ~~~g~~~~a~~-~~~~m~~ 430 (571)
.+.|+++++.+ .++.|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 99999998775 4555543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=7.7e-06 Score=69.85 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
...|..+..+|...|++++|+..++++++++|+++. +|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK-ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467888888899999999999999999999999988 9999999999999999999999887763
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-05 Score=80.99 Aligned_cols=163 Identities=9% Similarity=-0.060 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCcHHHHHHHHHHhHHhc---CCCC-ChHh
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSI----TFVALLLACNHAGLVDLGIQYFDSMVNDY---GIAA-KPDH 337 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 337 (571)
+..++..|...|++++|.+.+.+.... +..++.. ..+.+-..+...|+.+++..++....... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 456677777777777777777665431 1111221 12222233345677777777776654321 1111 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-----C--CCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccC---CCCC---ch
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-----P--FKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLN---PANA---AG 403 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~---~~ 403 (571)
+..++..|...|++++|..++++. + .++. ..++..++..|...|++++|...+++++... |+++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677788888888888888887765 1 1122 3567777788888888888888888776532 2221 11
Q ss_pred hHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 404 CYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 404 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
.+..++..+...|++++|...|....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45567777788888888887776554
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=1.1e-05 Score=82.38 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 316 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 316 (571)
...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +.+..++..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345556666666666665432 245556666666666666666666666665542 123445555555666666666
Q ss_pred HHHHHHHHhHHhcCCCCChHhHHHHHHH--HHHcCCHHHHHHHHH
Q 008280 317 LGIQYFDSMVNDYGIAAKPDHYTCMVDL--LGRAGKLVEAVDLIK 359 (571)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 359 (571)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666555421 1122333333333 455555555555555
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=4.5e-06 Score=69.82 Aligned_cols=62 Identities=13% Similarity=0.017 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHhcc-------CCCCCchhH----HHHHHHHhhccChhHHHHHHHHHHh
Q 008280 368 AIFGTLLSACRVHKRLDLAEFAAMNLFNL-------NPANAAGCY----VQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
..|..+..++...|++++|+..+++++++ +|++.. .| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~-A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK-LWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH-HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888889999999999999999888 999988 89 9999999999999999999998875
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=1.1e-05 Score=65.35 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC-------CchhHHHH
Q 008280 338 YTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN-------AAGCYVQL 408 (571)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~~l 408 (571)
+..+...+...|++++|...|++. . .+.+...+..+...+...|++++|...++++++..|++ +. ++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK-AYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH-HHHHH
Confidence 334444444455555555444443 1 11234444555555555555555555555555544433 33 45555
Q ss_pred HHHHhhccChhHHHHHHHHHHh
Q 008280 409 ANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
+.+|...|++++|.+.++...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00034 Score=66.63 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=156.2
Q ss_pred cCch-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------HHHHHHHHHhhC---CCChhhHHHHHHHHHH
Q 008280 211 LSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD----------LEDACKLFLEIQ---RKDVVTWNAMISGYAQ 276 (571)
Q Consensus 211 ~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 276 (571)
.|.+ ++|..+...++..+ +.+..+|+.--..+...|. +++++.+++.+. .++..+|+.-...+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3443 57888888888775 4455566654444444333 678888888776 3578899988888888
Q ss_pred cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHc-----
Q 008280 277 HGK--GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL-VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA----- 348 (571)
Q Consensus 277 ~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 348 (571)
.|+ +++++.+++++.+... -|..+|+.-.......|. ++++.+.+..+++. .+.+...|+....++.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred cCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccc
Confidence 884 8999999999998753 377788777777778887 68999999999874 355677787777776665
Q ss_pred ---------CCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhc-----------CCHhHHHHHHHHHhccCCCCCchhHH
Q 008280 349 ---------GKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVH-----------KRLDLAEFAAMNLFNLNPANAAGCYV 406 (571)
Q Consensus 349 ---------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~ 406 (571)
+.++++++.+++. -.+-|...|+-+-..+... +.++++++.++++++++|++.- .+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w-~l~ 276 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW-CLL 276 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch-HHH
Confidence 4578888888776 1234678888776666554 4578999999999999999854 444
Q ss_pred HHHHH---HhhccChhHHHHHHHHHHhC
Q 008280 407 QLANI---YAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 407 ~l~~~---~~~~g~~~~a~~~~~~m~~~ 431 (571)
.++.. ....|..++....+.++++-
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 33332 22457777888888888763
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=4.6e-06 Score=85.05 Aligned_cols=116 Identities=7% Similarity=-0.037 Sum_probs=74.5
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 385 (571)
.+...|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666542 2233566666666677777777777666665 2223 35677777777777788888
Q ss_pred HHHHHHHHhccCCCCCchhHHHHHHH--HhhccChhHHHHHHH
Q 008280 386 AEFAAMNLFNLNPANAAGCYVQLANI--YAAMKKWDDVARIRL 426 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 426 (571)
|+..++++++++|++.. .+..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTT-HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888777777776 77777766 777778888777776
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.1e-05 Score=63.32 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHH
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP---QPAIFGTLLSA 376 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 376 (571)
.+..+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555666666666666665542 2334555666666666777777777766655 2223 46677778888
Q ss_pred HHhc-CCHhHHHHHHHHHhccCCCCC
Q 008280 377 CRVH-KRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 377 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 401 (571)
+... |++++|+..+++++...|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888887654
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.8e-05 Score=64.12 Aligned_cols=108 Identities=7% Similarity=-0.048 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----C-CCCC----HhHHHH
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----P-FKPQ----PAIFGT 372 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~p~----~~~~~~ 372 (571)
+..+...+...|++++|...|....+. .+.+...+..+...|...|++++|...+++. + ..++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444445555555555444432 1223444444555555555555555555444 1 0122 456667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHh
Q 008280 373 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 413 (571)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~ 413 (571)
+...+...|++++|...++++++..|+ +. ....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PD-VLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-HHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-HH-HHHHHHHHHH
Confidence 777777788888888888888777773 33 5555555443
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=2.6e-05 Score=75.62 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=99.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCcHHHHHHHHHHhHHh
Q 008280 263 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--------------SITFVALLLACNHAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 328 (571)
+...|..+...|.+.|++++|+..|++......... ...+..+..++.+.|++++|...+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677788888888888888888888876532211 467888888889999999999999888863
Q ss_pred cCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHH-HHHHHHHhc
Q 008280 329 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLA-EFAAMNLFN 395 (571)
Q Consensus 329 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 395 (571)
.+.+...|..+..+|...|++++|++.|++. ...| +...+..+...+...|+.++| ...++++++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445778888899999999999999998877 2233 467888888888888888888 446666643
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.15 E-value=4.2e-06 Score=74.24 Aligned_cols=146 Identities=10% Similarity=0.006 Sum_probs=83.7
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CCh----------------hh
Q 008280 206 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDV----------------VT 266 (571)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~----------------~~ 266 (571)
......|+++.+++.+....... ......+..+...|.+.|++++|...|++..+ .+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33445566666666554322211 12344577788899999999999999998753 232 56
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 346 (571)
|..+..+|...|++++|+..+++..... +.+...+..+..++...|++++|...|+...+. .+.+...+..+..++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 6666677777777777777777766542 234556666666667777777777777666542 1223455555555555
Q ss_pred HcCCHHHHH
Q 008280 347 RAGKLVEAV 355 (571)
Q Consensus 347 ~~g~~~~A~ 355 (571)
..|+..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555554444
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=1.5e-05 Score=64.33 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 008280 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH 380 (571)
Q Consensus 303 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 380 (571)
..+...+.+.|++++|...|+...+. .+.+...|..+..++.+.|++++|+..|++. ...| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666777777777777777653 2335666777777777777777777777766 2223 456777788888888
Q ss_pred CCHhHHHHHHHHHhccCCCCC
Q 008280 381 KRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 381 g~~~~a~~~~~~~~~~~p~~~ 401 (571)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888754
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=1.9e-06 Score=69.09 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHH
Q 008280 348 AGKLVEAVDLIKKM-PF---KPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422 (571)
Q Consensus 348 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 422 (571)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++. ++..++.+|...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA-LRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHcCCHHHHH
Confidence 35555566655554 22 122 355666666677777777777777777777777766 7777777777777777777
Q ss_pred HHHHHHHh
Q 008280 423 RIRLSMKE 430 (571)
Q Consensus 423 ~~~~~m~~ 430 (571)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=1.2e-05 Score=67.97 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC------CCCc
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP------ANAA 402 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 402 (571)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555554443 00011 23555666666777777777777776665321 1123
Q ss_pred hhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 403 GCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 403 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 -~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 -ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567788888888888888888876653
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=3.5e-05 Score=62.55 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=60.8
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKP---DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSA 376 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 376 (571)
+...+...|++++|...|+.+.+.. +.+. ..+..+..+|.+.|++++|.+.|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3445555666666666666665431 1122 35556666666777777777766665 11122 4556677777
Q ss_pred HHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 377 CRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 377 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
+...|++++|...++++++..|+++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 88888888888888888888887654
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.09 E-value=3.1e-05 Score=62.95 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHH
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDL 344 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 344 (571)
++..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...++..++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~--- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH---
Confidence 44455555555555555555555555432 123344455555555555555555555544431 111 0000000
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 345 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
..+|..+..++...|++++|+..|++.++..|+
T Consensus 83 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666667777777777777777776664
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=4.1e-05 Score=77.63 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=98.6
Q ss_pred HHHhcCcHHHHHHHHHHhHHhcC--CCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-hHHH
Q 008280 308 ACNHAGLVDLGIQYFDSMVNDYG--IAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AIFG 371 (571)
Q Consensus 308 a~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 371 (571)
.+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998887765421 2222 557889999999999999999988876 334554 6889
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhc-----cCCCCCc--hhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 372 TLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
.|...|...|++++|+.+++++++ ++|+.|. .....|..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 5787754 134477888899999999999999998643
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=2e-05 Score=66.60 Aligned_cols=96 Identities=13% Similarity=0.007 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHh
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKP-QPA 368 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 368 (571)
++..+...+...|++++|..+++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555554432110111 334555556666666666666665544 1111 124
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhcc
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNL 396 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (571)
.+..+...+...|++++|...+++++++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666677777888888888888777654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=3.5e-05 Score=75.66 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHH
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 344 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 344 (571)
..|..+...+.+.|++++|+..|++..+. .|... ..... ....+ ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHH
Confidence 34666666677777777777777665541 00000 00000 11100 012235678889999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHH
Q 008280 345 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 422 (571)
Q Consensus 345 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 422 (571)
|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..++++++++|++.. .+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~-~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA-IQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4444 4678899999999999999999999999999999988 8999999999888888776
Q ss_pred HH
Q 008280 423 RI 424 (571)
Q Consensus 423 ~~ 424 (571)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00013 Score=73.22 Aligned_cols=207 Identities=8% Similarity=-0.026 Sum_probs=94.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH
Q 008280 170 IAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 249 (571)
Q Consensus 170 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 249 (571)
...+.+.|++++|++.|.++.+......... ...+.......... ..+..|+..|.+.|++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~-----------~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA--------AGASVDDKRRNEQE-----------TSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS--------SSSSBCSHHHHHHH-----------HHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhH--------HHHHHHHHHhhhHH-----------HHHHHHHHHHHHCCCH
Confidence 4556778888888888888877532211100 00000000000000 0123445555555555
Q ss_pred HHHHHHHHhhCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCcH
Q 008280 250 EDACKLFLEIQR-----KDV----VTWNAMISGYAQHGKGEKALRLFDKMKD----EGMKPD-SITFVALLLACNHAGLV 315 (571)
Q Consensus 250 ~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~ 315 (571)
++|.+.+..+.+ ++. ...+.+...+...|+.++|..++++... .+..+. ..++..+...+...|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 555555544331 000 1122222233334555555555554422 222222 22444555556666666
Q ss_pred HHHHHHHHHhHHhcCCCC----ChHhHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcCC
Q 008280 316 DLGIQYFDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ--PAIFGTLLSACRVHKR 382 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~ 382 (571)
++|..+++.+.....-.. ....+..++.+|...|++++|..++++. +..|. ...+..+...+...|+
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 666666555443211111 1345555566666666666666665544 11111 1234444444555666
Q ss_pred HhHHHHHHHHHhc
Q 008280 383 LDLAEFAAMNLFN 395 (571)
Q Consensus 383 ~~~a~~~~~~~~~ 395 (571)
+++|...+.++++
T Consensus 232 y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 232 YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=2.2e-05 Score=66.92 Aligned_cols=78 Identities=19% Similarity=0.070 Sum_probs=61.6
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|...++++++++|+++......|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 467788888899999999999888876 222 356788999999999999999999999999999998731444444443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.4e-05 Score=77.52 Aligned_cols=148 Identities=10% Similarity=-0.028 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 264 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777788888889999999999987764 344432 223344444332221 236778888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH-hhccChhH
Q 008280 344 LLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY-AAMKKWDD 420 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~ 420 (571)
+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|+..|+++++++|+++. ++..|..+. ...+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~-a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA-IRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 222 35788999999999999999999999999999999887 888888774 44567777
Q ss_pred HHHHHHHHHhCC
Q 008280 421 VARIRLSMKENN 432 (571)
Q Consensus 421 a~~~~~~m~~~~ 432 (571)
+.+.|+.|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888776543
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.9e-06 Score=66.22 Aligned_cols=92 Identities=11% Similarity=-0.059 Sum_probs=73.6
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC------CchhH
Q 008280 334 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCY 405 (571)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 405 (571)
+...+..+...+.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|++ .. .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH-HH
Confidence 4556777788888888888888888776 222 357788889999999999999999999999999998 55 77
Q ss_pred HHHHHHHhhccChhHHHHHHH
Q 008280 406 VQLANIYAAMKKWDDVARIRL 426 (571)
Q Consensus 406 ~~l~~~~~~~g~~~~a~~~~~ 426 (571)
..++.++...|+.++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 788888888887777765544
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=8.1e-06 Score=65.35 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=58.8
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHH
Q 008280 312 AGLVDLGIQYFDSMVNDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAE 387 (571)
Q Consensus 312 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 387 (571)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666542 1 1223556667777777777777777777766 1223 4567777788888888888888
Q ss_pred HHHHHHhccCCCCCc
Q 008280 388 FAAMNLFNLNPANAA 402 (571)
Q Consensus 388 ~~~~~~~~~~p~~~~ 402 (571)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 888888888887764
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00048 Score=71.53 Aligned_cols=169 Identities=8% Similarity=-0.045 Sum_probs=131.7
Q ss_pred CHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 008280 248 DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGK----------GEKALRLFDKMKDEGMKPDSITFVALLLACNHAG- 313 (571)
Q Consensus 248 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g- 313 (571)
..++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+... -+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 34677888877663 355678877777777776 8899999999887653 36667877777788888
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---------
Q 008280 314 -LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG-KLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH--------- 380 (571)
Q Consensus 314 -~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 380 (571)
+++++.+.++++.+. -+-+...|+.-.-++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999998874 3445777887777788888 889999998887 3333 567888877776653
Q ss_pred -----CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhH
Q 008280 381 -----KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 420 (571)
Q Consensus 381 -----g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 420 (571)
+.++++.+.+.+++..+|++.. +|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~s-aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQS-AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSH-HHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHhcCCCccc
Confidence 5579999999999999999998 99999999999988655
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=2e-05 Score=65.89 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HhHH----HHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM--------PFKPQ-PAIF----GTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 5666666666666666666666554 23676 4688 89999999999999999999999999999876
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=2.7e-05 Score=75.54 Aligned_cols=153 Identities=12% Similarity=0.019 Sum_probs=81.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 312 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 312 (571)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577788999999999999999998654222111 1222333344433221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH-HHhcCCHhHHHHH
Q 008280 313 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSA-CRVHKRLDLAEFA 389 (571)
Q Consensus 313 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~ 389 (571)
|++++|...++..++. .+.+...|..+..+|...|++++|++.|++. ...|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988863 2445778889999999999999999999887 34454 3455555544 3456677888999
Q ss_pred HHHHhccCCCCCc
Q 008280 390 AMNLFNLNPANAA 402 (571)
Q Consensus 390 ~~~~~~~~p~~~~ 402 (571)
|.++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999988753
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=4.8e-05 Score=58.82 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=60.8
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
.+...|..+...+...|++++|+..|+++++++|+++. +|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG-TYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999998 9999999999999999999999987653
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.00014 Score=73.64 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-------------CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 337 HYTCMVDLLGRAGKLVEAVDLIKKM----PFKP-------------QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
.+..+...|.+.|++++|+..|++. +..+ ....|..+..+|.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 3444455555555555555555544 1111 1478888999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 400 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 400 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
++. +|..++.+|...|++++|...|++..+..
T Consensus 350 ~~~-a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEK-GLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 988 99999999999999999999999988754
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=5.7e-05 Score=56.78 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=64.0
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 412 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~ 412 (571)
...+..+...+.+.|++++|++.|++. .. +.+...|..+...+...|++++|...++++++.+|+++. .+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-AKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHH
Confidence 456667777788888888888888766 11 235678888888899999999999999999999998887 888888887
Q ss_pred hhcc
Q 008280 413 AAMK 416 (571)
Q Consensus 413 ~~~g 416 (571)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=6.2e-05 Score=59.77 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=62.2
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 354 AVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 354 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|+++. ++..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV-AWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445444 2233 4678888888999999999999999999999999887 899999999999999999999988765
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=7.6e-05 Score=75.66 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=88.4
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhc-----cCCCCCc--hhHH
Q 008280 344 LLGRAGKLVEAVDLIKKM---------PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GCYV 406 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~--~~~~ 406 (571)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+. .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 23344 36889999999999999999999999876 4566543 2677
Q ss_pred HHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHH
Q 008280 407 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 477 (571)
Q Consensus 407 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~ 477 (571)
.|+.+|...|++++|..++++..+.-.. .-...||...++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887642111 0123499999988888777766654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=4.3e-05 Score=63.71 Aligned_cols=86 Identities=7% Similarity=-0.007 Sum_probs=61.7
Q ss_pred HcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCC----------HhHHHHHHHHHhccCCCCCchhHHHHHHHHhh
Q 008280 347 RAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKR----------LDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 414 (571)
Q Consensus 347 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 414 (571)
|.+.+++|++.+++. ... .+...|..+..++...++ +++|+..|+++++++|+... +|..++++|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~-A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE-AVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH-HHHHHHHHHHH
Confidence 334455555555444 111 234555555555555444 56999999999999999998 99999999998
Q ss_pred cc-----------ChhHHHHHHHHHHhCCC
Q 008280 415 MK-----------KWDDVARIRLSMKENNV 433 (571)
Q Consensus 415 ~g-----------~~~~a~~~~~~m~~~~~ 433 (571)
.| ++++|.+.|++..+.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 75 89999999999887443
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.64 E-value=0.00038 Score=52.70 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=61.3
Q ss_pred CCCHhHHHHHHHHHHhcCC---HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 364 KPQPAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 364 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
.+|+..+..+..++...++ .++|..+++++++++|+++. +...++..+...|++++|+..++++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r-A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA-ALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567888888888765555 79999999999999999998 9999999999999999999999999886654
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.64 E-value=0.00034 Score=68.51 Aligned_cols=117 Identities=7% Similarity=-0.030 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQR-------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 296 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 296 (571)
+..+...|.+.|++++|...|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 55567777778888888877776543 123455555556666666666666666555432 1
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHH
Q 008280 297 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 355 (571)
Q Consensus 297 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 355 (571)
.+...+..+..++...|++++|...|++..+. .+.+...+..+..++.+.++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555556666666666666555542 1223444444455555544444443
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.62 E-value=0.00017 Score=71.89 Aligned_cols=117 Identities=10% Similarity=0.094 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCCHhHHHHHHHHHhc-----cCCCCCc--hh
Q 008280 342 VDLLGRAGKLVEAVDLIKKM---------PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GC 404 (571)
Q Consensus 342 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~--~~ 404 (571)
+.-+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.|. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466778888888888765 11222 35788899999999999999999998875 4555432 26
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHH
Q 008280 405 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 476 (571)
Q Consensus 405 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~ 476 (571)
+..|+.+|...|++++|..++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999877642110 012348999999888888887775
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00023 Score=55.67 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=61.7
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
++...|..+...+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV-GYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 35678888999999999999999999999999999988 99999999999999999999999988654
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00015 Score=60.49 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHhc-----------CCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccCh
Q 008280 352 VEAVDLIKKM-PFKPQ-PAIFGTLLSACRVH-----------KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 418 (571)
Q Consensus 352 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 418 (571)
++|+..|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++. .|...+.. .
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~--~y~~al~~------~ 134 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT--HYLKSLEM------T 134 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHH------H
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH--HHHHHHHH------H
Confidence 3555555544 22333 34555566665554 589999999999999999986 44433333 3
Q ss_pred hHHHHHHHHHHhC
Q 008280 419 DDVARIRLSMKEN 431 (571)
Q Consensus 419 ~~a~~~~~~m~~~ 431 (571)
++|.+++-.+...
T Consensus 135 ~ka~el~~~~~~~ 147 (158)
T 1zu2_A 135 AKAPQLHAEAYKQ 147 (158)
T ss_dssp HTHHHHHHHHHHS
T ss_pred HhCHhccCccccc
Confidence 4455555544443
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.39 E-value=0.0041 Score=64.47 Aligned_cols=149 Identities=10% Similarity=0.017 Sum_probs=120.2
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCc----------HHHHHHHHHHhHHhcCCCCChHhHHHHHHHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGL----------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 346 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 346 (571)
...++|++.++++...+ |+ ...|+.--.++...|+ ++++...++.+.+. .+.+..+|..-.-++.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34568899999998864 44 4556665556666666 89999999999874 3556778888888888
Q ss_pred HcC--CHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcC-CHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhc------
Q 008280 347 RAG--KLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHK-RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM------ 415 (571)
Q Consensus 347 ~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~------ 415 (571)
+.| +++++++.++++ . ...+...|+.-..++...| .++++++.++++++.+|.+.. +|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s-aW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS-SWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH-HHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHhhcccccc
Confidence 999 779999999998 2 2346789999888888889 899999999999999999988 999999888774
Q ss_pred --------cChhHHHHHHHHHHhC
Q 008280 416 --------KKWDDVARIRLSMKEN 431 (571)
Q Consensus 416 --------g~~~~a~~~~~~m~~~ 431 (571)
++++++.+.++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 6678888888777653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.36 E-value=0.0015 Score=53.71 Aligned_cols=87 Identities=10% Similarity=-0.135 Sum_probs=42.1
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhh----
Q 008280 343 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA---- 414 (571)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~---- 414 (571)
.+|...+.+++|.+.|++.-...++..+..|...|.. .+++++|...|+++.+. .++. ++..|+.+|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~-a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQD-GCLILGYKQYAGKGV 109 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHH-HHHHHHHHHHHTSSS
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHH-HHHHHHHHHHCCCCC
Confidence 3333333344444444433112234444444444444 45555555555555544 2233 55566666655
Q ss_pred ccChhHHHHHHHHHHhCC
Q 008280 415 MKKWDDVARIRLSMKENN 432 (571)
Q Consensus 415 ~g~~~~a~~~~~~m~~~~ 432 (571)
.+++++|.+++++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 566666666666555544
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.016 Score=63.22 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=96.7
Q ss_pred HHHHcCCCHHHHHH-HHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008280 78 SGFVQKKNMAKARD-LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFD 156 (571)
Q Consensus 78 ~~~~~~g~~~~A~~-~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 156 (571)
......+++++|.+ ++..++ +......++..+.+.|.+++|+++.+ +. ..-.......|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISP-----DQ---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCC-----Cc---chheehhhhcCCHHHHHHHHH
Confidence 33445677888777 554433 11123666677777788888776553 11 112345567888888888877
Q ss_pred hCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchH
Q 008280 157 EMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 236 (571)
Q Consensus 157 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 236 (571)
.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....| -+
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KF 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------ch
Confidence 663 567888888888888888888888887642 3334444444666666655555555544 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 008280 237 TPLISMYCKCGDLEDACKLFLE 258 (571)
Q Consensus 237 ~~li~~y~~~g~~~~A~~~~~~ 258 (571)
+....+|.++|++++|.+++.+
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4445556667777777666544
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00016 Score=72.00 Aligned_cols=83 Identities=6% Similarity=0.027 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHhHHHHHHHHHhc-----cCCCCCc--hhHHHHHH
Q 008280 348 AGKLVEAVDLIKKM---------PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GCYVQLAN 410 (571)
Q Consensus 348 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~--~~~~~l~~ 410 (571)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+.+. .++..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777654 223443 6788899999999999999999998875 4555432 26778999
Q ss_pred HHhhccChhHHHHHHHHHHh
Q 008280 411 IYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 411 ~~~~~g~~~~a~~~~~~m~~ 430 (571)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999987764
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.32 E-value=0.0011 Score=54.50 Aligned_cols=112 Identities=14% Similarity=-0.043 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHH----cCCHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR----AGKLVE 353 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 353 (571)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788888888888877 34444 566677777888888888888763 456777888888887 788999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHhccCC
Q 008280 354 AVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNP 398 (571)
Q Consensus 354 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 398 (571)
|.+.|++.-...++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887333567788888888887 8899999999999887754
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.00087 Score=52.92 Aligned_cols=81 Identities=7% Similarity=-0.069 Sum_probs=51.9
Q ss_pred HHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 318 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+...|+...+ ..+.+...+..+...|.+.|++++|++.|++. ... .+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555543 12334566666777777777777777777665 112 3356777777777788888888888888777
Q ss_pred cCCCC
Q 008280 396 LNPAN 400 (571)
Q Consensus 396 ~~p~~ 400 (571)
+.|+.
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 76643
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.29 E-value=0.00058 Score=51.00 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 367 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
...|..+...+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 567888889999999999999999999999999988 9999999999999999999999988764
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.14 E-value=0.0021 Score=52.93 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=69.9
Q ss_pred CCHhHHHHHHHHHHhcC---CHhHHHHHHHHHhccC-C-CCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCce
Q 008280 365 PQPAIFGTLLSACRVHK---RLDLAEFAAMNLFNLN-P-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 439 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 439 (571)
++..+...+..++.+.+ +.++|+.+++.+++.+ | +... .++.|+-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd-~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD-YVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH-HHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 67777778888888887 6669999999998887 7 3455 8889999999999999999999988762
Q ss_pred eEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcc
Q 008280 440 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481 (571)
Q Consensus 440 s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~ 481 (571)
.|...++......+.+.+.+.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 244455656666677778888764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0021 Score=63.91 Aligned_cols=92 Identities=7% Similarity=-0.102 Sum_probs=71.3
Q ss_pred hcCcHHHHHHHHHHhHHhc--CCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-hHHHHHH
Q 008280 311 HAGLVDLGIQYFDSMVNDY--GIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AIFGTLL 374 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 374 (571)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887766532 12222 457888899999999999999988876 344554 6889999
Q ss_pred HHHHhcCCHhHHHHHHHHHhc-----cCCCCCc
Q 008280 375 SACRVHKRLDLAEFAAMNLFN-----LNPANAA 402 (571)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 402 (571)
..|...|++++|+.+++++++ ++|+.|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999876 5788764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0035 Score=62.45 Aligned_cols=97 Identities=9% Similarity=-0.026 Sum_probs=74.2
Q ss_pred HHHHHhcCcHHHHHHHHHHhHHhcC--CCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-hH
Q 008280 306 LLACNHAGLVDLGIQYFDSMVNDYG--IAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AI 369 (571)
Q Consensus 306 l~a~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 369 (571)
+..+...|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456677888888888887764321 2222 456788888899999999999888876 334554 67
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhc-----cCCCCCc
Q 008280 370 FGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA 402 (571)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 402 (571)
++.|...|...|++++|+.+++++++ ++|+.|.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 88999999999999999999999876 6888764
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.015 Score=55.60 Aligned_cols=138 Identities=14% Similarity=0.021 Sum_probs=67.3
Q ss_pred CCChhhHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc---C-----cHHHHHHHHHHhH
Q 008280 261 RKDVVTWNAMISGYAQ--HG---KGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHA---G-----LVDLGIQYFDSMV 326 (571)
Q Consensus 261 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~---g-----~~~~a~~~~~~~~ 326 (571)
..+..+|...+.+... .+ ...+|..+|++..+. .|+. ..+..+..++... + ......+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3466777777665432 23 346788888888775 4553 3444433333210 0 0000011111111
Q ss_pred HhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCC
Q 008280 327 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 327 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 400 (571)
.....+.++.+|..+.-.+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00012334555555555455556666666655555 223455555555555555666666666666666666554
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0028 Score=48.51 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 008280 265 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 326 (571)
Q Consensus 265 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 326 (571)
..|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444432 1122334444444444444444444444443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.00 E-value=0.025 Score=61.61 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=23.3
Q ss_pred HhcCCHHHHHH-HHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 008280 143 MKFGKVDLAEK-LFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 143 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecC
Confidence 34667777766 5544331 112255666666667777666554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.94 E-value=0.0036 Score=47.54 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=56.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccC
Q 008280 341 MVDLLGRAGKLVEAVDLIKKM-PFKP-QPA-IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 417 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 417 (571)
....+.+.|++++|++.|++. ...| +.. .|..+..++...|++++|+..|+++++++|+++. ++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA-LQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH-HHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHH--------HH
Confidence 455677788888888888776 2223 456 7888888888999999999999999999998876 5422 44
Q ss_pred hhHHHHHHHHH
Q 008280 418 WDDVARIRLSM 428 (571)
Q Consensus 418 ~~~a~~~~~~m 428 (571)
+.++...+++.
T Consensus 77 ~~~a~~~~~~~ 87 (99)
T 2kc7_A 77 VMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHH
Confidence 55555555433
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.51 E-value=0.22 Score=39.44 Aligned_cols=140 Identities=10% Similarity=0.069 Sum_probs=100.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHH
Q 008280 275 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 354 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 354 (571)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-|.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3457777778887777653 24556666665555555555566666666443222 245666666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 355 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
...+-.++ .+.......+......|.-+.-.+++..++.-+|-++. ....++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~-~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSAS-ILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChH-HHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66666665 45566677788888999999999999997665555566 8999999999999999999999999999985
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.47 E-value=0.003 Score=48.05 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=27.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 271 ISGYAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 271 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
...+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|...|+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555555555555554432 11233 444444555555555555555555543
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.42 E-value=0.028 Score=53.76 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHH--hc---CcHHHHHHHHHHhHHhcCCCCC-hHhHHHHHHHHHH---cC-C-------HHHHHHH
Q 008280 295 MKPDSITFVALLLACN--HA---GLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGR---AG-K-------LVEAVDL 357 (571)
Q Consensus 295 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g-~-------~~~A~~~ 357 (571)
.+.+...|...+.+.. .. ....+|..+|++.++. .|+ ...|..+.-+|.- .+ . +..+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3455666766665543 22 3457899999999863 666 4455544443321 11 1 1222322
Q ss_pred HHhCC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 358 IKKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 358 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
...+. ...++.+|.++.-.+...|++++|...+++++.++|+ .. .|..++.++.-.|++++|.+.+++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~-a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WL-NYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22332 2356788888887788889999999999999999986 34 788999999999999999999988876544
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.29 Score=41.19 Aligned_cols=104 Identities=9% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHH
Q 008280 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 219 (571)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 219 (571)
+...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888887777665 4566788888888888888888888776432 3334444455566666555
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhC
Q 008280 220 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 260 (571)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 260 (571)
+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555554444 23334444555666666666665543
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.28 E-value=0.021 Score=43.90 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=52.0
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhH
Q 008280 335 PDHYTCMVDLLGRAGKLVEAVDLIKKM-----P----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 405 (571)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 405 (571)
..-+..|...+.+.|++..|...|+.. + -.+...++..|..++.+.|+++.|...+++++++.|+++. +.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~-~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR-AN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-HH
Confidence 334445666666666666666666554 1 1234578888999999999999999999999999999875 44
Q ss_pred HHH
Q 008280 406 VQL 408 (571)
Q Consensus 406 ~~l 408 (571)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 333
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.17 Score=42.60 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=86.5
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 008280 240 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 319 (571)
Q Consensus 240 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 319 (571)
.+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456689999999888776 4677899999999999999999999887642 334444556667766555
Q ss_pred HHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008280 320 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 393 (571)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (571)
.+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 443333221 1 234445556678999999999988764332211 123467777777777665
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.17 E-value=0.021 Score=45.14 Aligned_cols=65 Identities=8% Similarity=-0.087 Sum_probs=43.0
Q ss_pred CCHhHHHHHHHHHHhcCCHhH---HHHHHHHHhccC-C-CCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 365 PQPAIFGTLLSACRVHKRLDL---AEFAAMNLFNLN-P-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
++..+--.+..++.++.+... ++.+++.++..+ | .... ....|+-+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd-~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD-YVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555556666666665544 777777777665 4 2333 666777777788888888777777765
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.16 E-value=0.0007 Score=66.06 Aligned_cols=395 Identities=14% Similarity=0.150 Sum_probs=203.1
Q ss_pred cchHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHcC
Q 008280 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISGFVQK 83 (571)
Q Consensus 6 ~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~ 83 (571)
+.+|..|..++...+ .+.+|+..|=+ ..|+..|...|....+. |.+++-...+...++ +++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~-~v~eAIdsyIk--A~Dps~y~eVi~~A~~~-~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKG-MVKEAIDSYIK--ADDPSSYMEVVQAANTS-GNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSS-SCTTTTTSSCC--CSCCCSSSHHHHHTTTS-SCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccC-chHHHHHHHHh--CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 345666666666665 66666554422 24555566677766666 777777776665543 4666667777788877
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCC------------------------CCChhHHHHHH
Q 008280 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP------------------------VKSVVAWTAMI 139 (571)
Q Consensus 84 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li 139 (571)
+++.+-.+++ ..||+.-...+..-|...|.++.|+-+|..+. ..++.+|-.+-
T Consensus 130 ~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 7755432221 23566666677777777777777777765543 23556677777
Q ss_pred HHHHhcCCHHHHHHHHhh-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHH
Q 008280 140 SGYMKFGKVDLAEKLFDE-MPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 218 (571)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 218 (571)
.+|...+.+.-|.-.--. +..+| -...++.-|-..|.+++-+.+++.-.... ....-.|+-|.-.|++- ++++-.
T Consensus 207 ~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred HHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHH
Confidence 777777766655332211 11111 11124444666777777777777655321 23444566555555553 223222
Q ss_pred HHHHHHH-hCCCC------CCcchHHHHHHHHHhcCCHHHHHHH-------------HHhhCC--CChhhHHHHHHHHH-
Q 008280 219 QVHQLVF-KSPLC------KDTTALTPLISMYCKCGDLEDACKL-------------FLEIQR--KDVVTWNAMISGYA- 275 (571)
Q Consensus 219 ~~~~~~~-~~g~~------~~~~~~~~li~~y~~~g~~~~A~~~-------------~~~~~~--~~~~~~~~li~~~~- 275 (571)
+-++..- +.+++ .....|.-++-.|.+-.+++.|... |.++.. .|+..|-.-|.-|.
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~ 362 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 362 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 2222111 12222 2456788888888888888877432 111111 23334443343333
Q ss_pred --------------HcCChHHHHHHHHHHHHcC-CC--------CCHHHHH-HHHHHHHhcCcHHHHHH-----------
Q 008280 276 --------------QHGKGEKALRLFDKMKDEG-MK--------PDSITFV-ALLLACNHAGLVDLGIQ----------- 320 (571)
Q Consensus 276 --------------~~g~~~~A~~~~~~m~~~g-~~--------p~~~t~~-~ll~a~~~~g~~~~a~~----------- 320 (571)
..=+...+.++|++.-... ++ -|....| ++-..+....+++.-+.
T Consensus 363 e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i 442 (624)
T 3lvg_A 363 FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNI 442 (624)
T ss_dssp SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTT
T ss_pred hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHH
Confidence 2223333333333211000 01 1222222 22223333333332111
Q ss_pred -HHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCC
Q 008280 321 -YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 399 (571)
Q Consensus 321 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 399 (571)
+-+++.+ .+-.+--..-...|.+.+++.+++++.++=+.-.| .+...+.+|+.+.++++++-.++.+-.
T Consensus 443 ~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~~ 512 (624)
T 3lvg_A 443 SLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEKR 512 (624)
T ss_dssp HHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCST
T ss_pred HHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCch
Confidence 1111110 01122222334456677777777766554332222 233345677777777777776665432
Q ss_pred CCchhHHHHHHHHhhccChhHHHHH
Q 008280 400 NAAGCYVQLANIYAAMKKWDDVARI 424 (571)
Q Consensus 400 ~~~~~~~~l~~~~~~~g~~~~a~~~ 424 (571)
. .|...+..|...=+.+-+.++
T Consensus 513 --E-cF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 513 --E-CFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --H-HHHHHHHHTSSSSSCHHHHHH
T ss_pred --H-HHHHHHHHHhhccChHHHHHH
Confidence 3 677777777777777777665
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.14 E-value=0.00013 Score=71.09 Aligned_cols=236 Identities=11% Similarity=0.090 Sum_probs=168.2
Q ss_pred ChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCC--CCcchHHHHHHHHHHc
Q 008280 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNSVSWSAMISGYIEC 114 (571)
Q Consensus 37 ~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~ 114 (571)
.+..|+.|..+.... +.+.+|++-|-+ ..|+..|..+|....+.|.+++-++.+...++ +++..=+.|+-+|++.
T Consensus 53 ~p~VWs~LgkAqL~~-~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQK-GMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCCSSSHHHHTTTS-SSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred CccHHHHHHHHHHcc-CchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 445688888888888 888888776644 45666778888888899999988888866654 4666677899999999
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------------CCCHHHHHHHH
Q 008280 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMP------------------------TKNLVTWNAMI 170 (571)
Q Consensus 115 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li 170 (571)
++..+-.+++ ..++..-.....+-|...|.++.|.-+|..+. ..++.+|-.+-
T Consensus 130 ~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 8876654433 24555556677788888888888888887765 14667899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 008280 171 AGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 250 (571)
Q Consensus 171 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 250 (571)
.+|...+++.-|.-.--.+.- .|| .+..++..|...|.+++-..+++..+... .....+++-|.-.|+|- +++
T Consensus 207 ~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~Pe 279 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQ 279 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTT
T ss_pred HHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHH
Confidence 999999988877654444432 222 22335556778888888888888777543 45677899999999986 444
Q ss_pred HHHHHHHhhCC----C-------ChhhHHHHHHHHHHcCChHHHHH
Q 008280 251 DACKLFLEIQR----K-------DVVTWNAMISGYAQHGKGEKALR 285 (571)
Q Consensus 251 ~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 285 (571)
+-.+.++.... | ....|.-++-.|.+-.+++.|..
T Consensus 280 KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44444443222 1 45679999999998888887753
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.94 E-value=0.059 Score=40.36 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=53.6
Q ss_pred CCChHhHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCC
Q 008280 332 AAKPDHYTCMVDLLGRAGK---LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 401 (571)
Q Consensus 332 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 401 (571)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4567777777877765554 68888888877 2334 467777788888999999999999999999998844
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.90 E-value=0.25 Score=39.66 Aligned_cols=92 Identities=7% Similarity=-0.040 Sum_probs=67.2
Q ss_pred CCCHhHHHHHHHHHHhcCC---HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccCCcee
Q 008280 364 KPQPAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 440 (571)
Q Consensus 364 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 440 (571)
.|+..+--.+..++.++.+ ..+++.+++.++..+|.........|+-+|.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666666677766664 4578888888888888654447788899999999999999998888762
Q ss_pred EEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcc
Q 008280 441 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481 (571)
Q Consensus 441 ~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~ 481 (571)
.|...++...-..+.++|.++|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 244556666566667788888775
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.84 E-value=0.028 Score=51.55 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=68.0
Q ss_pred HHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCCHhHHHHHHHHHhccCCCC-CchhHHHHHHHHhhc-cChh
Q 008280 351 LVEAVDLIKKM-PFKPQ---PAIFGTLLSACRV-----HKRLDLAEFAAMNLFNLNPAN-AAGCYVQLANIYAAM-KKWD 419 (571)
Q Consensus 351 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~-g~~~ 419 (571)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. .. +++..+..++.. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id-~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD-HHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH-HHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHhcCCHH
Confidence 34555555554 34455 4578888888877 499999999999999999975 77 999999999884 9999
Q ss_pred HHHHHHHHHHhCCCccCCc
Q 008280 420 DVARIRLSMKENNVVKMPG 438 (571)
Q Consensus 420 ~a~~~~~~m~~~~~~~~~~ 438 (571)
++.+.+++.........|+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 9999999998876664454
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.74 E-value=0.028 Score=46.22 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=46.6
Q ss_pred CChHhHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 333 AKPDHYTCMVDLLGRAG---KLVEAVDLIKKM-PFK-P--QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 333 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
++..+...+.-++.+.+ ++++++.++++. ... | +...+..|.-+|.+.|++++|.+.++++++.+|++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 45555555555555555 344555555544 111 3 2345566777889999999999999999999998864
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.01 E-value=3.9 Score=42.34 Aligned_cols=114 Identities=10% Similarity=0.013 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 008280 278 GKGEKALRLFDKMKDEGMKPDSITFVAL----LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 353 (571)
Q Consensus 278 g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 353 (571)
.+.+.|...|....... ..+......+ .......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788999888876543 2233322222 22233344244555556554432 2333334444445557799999
Q ss_pred HHHHHHhCCCCC-C-HhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 354 AVDLIKKMPFKP-Q-PAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 354 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
|...|+.|+..+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996432 2 22222344567788999999999998865
No 233
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.89 E-value=1.7 Score=37.52 Aligned_cols=144 Identities=9% Similarity=-0.015 Sum_probs=58.7
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 008280 66 PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145 (571)
Q Consensus 66 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 145 (571)
..+|..+....+..+.+.+..+....+.+.+..+|...-...+.++...|..+....+.+.+..++..+....+.++.+.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33444444444444444443332233333333334333333444444444433333333334444444444455555555
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc
Q 008280 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213 (571)
Q Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 213 (571)
++.+....+.+.+..+|...-...+.++.+.+.. +++..+..+.. .++...-...+.++...|.
T Consensus 104 ~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 104 GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5443333333333344444434444444444432 23333333332 2344444444445544444
No 234
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.82 E-value=1.8 Score=37.64 Aligned_cols=143 Identities=9% Similarity=-0.015 Sum_probs=58.7
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 008280 67 IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146 (571)
Q Consensus 67 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 146 (571)
.+|..+-...+..+.+.|..+..-.+.+.+..+|...-...+.++.+.|..+....+.+.+..++..+....+.++.+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444443222223333333444333444444444444333333333344444444444555555555
Q ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc
Q 008280 147 KVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 213 (571)
Q Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 213 (571)
+.+....+.+.+..+|...-...+.++.+.|.. +++..+..+.. .++...-...+.++...+.
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 433333333333344444444444444444432 23333333332 2344444444444444444
No 235
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.55 E-value=1.7 Score=37.58 Aligned_cols=184 Identities=9% Similarity=-0.027 Sum_probs=123.8
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcch
Q 008280 24 KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS 103 (571)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~ 103 (571)
..-..+++.+..+|...-...+..+.+. |+.+....+.+.+..+|..+-...+.++.+.|+.+..-.+...+..+|...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~-~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~v 92 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKI-GDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV 92 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHH-CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH
Confidence 3334455556667777666667776666 665555556666667787777777778877777655555555666677777
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHH
Q 008280 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183 (571)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 183 (571)
-...+.++.+.|+.+....+.+.+..++..+....+.+..+.+..+....+.+.+..++...-...+.++...|. .++.
T Consensus 93 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~ 171 (201)
T 3ltj_A 93 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVR 171 (201)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHH
Confidence 778888888888876555566666777888888888888888876555555555556777666677777777765 4567
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 008280 184 KLLRMMIGLGIRPNASSLSSVLLGCSHLS 212 (571)
Q Consensus 184 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 212 (571)
..+..+... ++...-...+.+..+..
T Consensus 172 ~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 172 AAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 777776653 45555555555555443
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.08 E-value=0.15 Score=38.91 Aligned_cols=66 Identities=8% Similarity=-0.128 Sum_probs=54.7
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccC-------CCCCchhHHHHHHHHhhccChhHHHHHHHHHHhC
Q 008280 365 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-------PANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 431 (571)
.+..-...|...+...|+++.|...++++++.. +..+. .+..|+.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~-i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVS-VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHH-HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788899999999999999999997742 23344 7889999999999999999999988763
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.77 E-value=0.4 Score=37.97 Aligned_cols=66 Identities=8% Similarity=-0.059 Sum_probs=42.3
Q ss_pred CCHhHHHHHHHHHHhcCC---HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 365 PQPAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 365 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|++.+--.+..++.++.+ ..+|+.+++.+++.+|......+..|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455555555555555543 346777777777766643333677777777788888888777776665
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.71 E-value=0.19 Score=46.00 Aligned_cols=82 Identities=10% Similarity=0.144 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHHhcCCCCC---hHhHHHHHHHHHHc-----CCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHh-cCCH
Q 008280 316 DLGIQYFDSMVNDYGIAAK---PDHYTCMVDLLGRA-----GKLVEAVDLIKKM-PFKPQ--PAIFGTLLSACRV-HKRL 383 (571)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~~ 383 (571)
..|...+++.++ +.|+ ...|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 444555555543 3555 44666777777773 7777777777776 33342 5566666666666 4788
Q ss_pred hHHHHHHHHHhccCCCC
Q 008280 384 DLAEFAAMNLFNLNPAN 400 (571)
Q Consensus 384 ~~a~~~~~~~~~~~p~~ 400 (571)
+++.+.+++++...|..
T Consensus 257 ~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 257 AGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 88888888888877763
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.52 E-value=0.51 Score=38.29 Aligned_cols=54 Identities=6% Similarity=-0.121 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 348 AGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 348 ~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.++.++|.++|+.+ .-+- ...|.....--.++|+...|.+++.+++++.|.+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 35666666666655 1112 667777777778899999999999999998887654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.8 Score=48.41 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=49.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHH
Q 008280 374 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 429 (571)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 429 (571)
..-|...|+++.|+.+.+++...-|.+.. +|..|+.+|.+.|+|+.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~-tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFE-SWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhH-HHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34567889999999999999999999988 99999999999999999999998873
No 241
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.24 E-value=3.8 Score=35.51 Aligned_cols=159 Identities=10% Similarity=-0.001 Sum_probs=67.0
Q ss_pred HhhCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCCCcchHHHHHH
Q 008280 30 FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109 (571)
Q Consensus 30 ~~~~~~~~~~~~~~ll~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~ 109 (571)
.+.+..+|...-...+..+.+. |+.+..-.+.+.+..+|..+-...+.++.+.++.+..-.+.+.+..+|...-...+.
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~-~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~ 103 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKI-GDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV 103 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHH-CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3333344444444444444444 443333333333444454444444455554444333333333333444444444455
Q ss_pred HHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008280 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMM 189 (571)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 189 (571)
++.+.|+.+....+.+.+.+++..+....+.++.+.|..+....+.+.+..+|...-...+.++.+.+. .++...+.++
T Consensus 104 aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 555555443333333333444544555555555555443333333333333444443444444444443 2333333333
Q ss_pred H
Q 008280 190 I 190 (571)
Q Consensus 190 ~ 190 (571)
.
T Consensus 183 l 183 (211)
T 3ltm_A 183 A 183 (211)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.10 E-value=0.85 Score=35.92 Aligned_cols=70 Identities=16% Similarity=0.021 Sum_probs=45.9
Q ss_pred CChHhHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 333 AKPDHYTCMVDLLGRAGKLVE---AVDLIKKM-PFK-P--QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 333 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
++..+-..+.-++.+..+..+ ++.++++. ... | .......|.-++.+.|++++|.+.++.+++.+|++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 555555555556666555444 55555554 111 2 1234455667788999999999999999999998865
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.50 E-value=3.3 Score=32.88 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 008280 174 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253 (571)
Q Consensus 174 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 253 (571)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. .|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3456666666666665542 23334444443333333433333333333221 111 2356666555
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCC
Q 008280 254 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 331 (571)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 331 (571)
..+-.+. .+....+..+......|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.+..++ |+
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 5555443 3444555667777788888888888877543 24677777778888888888888888888877764 54
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.22 E-value=1 Score=36.55 Aligned_cols=55 Identities=11% Similarity=-0.110 Sum_probs=44.4
Q ss_pred hcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 379 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
..++.++|.++|+.++++...-.. .|...+..-.+.|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAK-iwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAF-VHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 448999999999999877444433 7778888888999999999999988876654
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.87 E-value=16 Score=39.65 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=22.4
Q ss_pred ccCchHHHHHHHHHHHhCCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHhhC
Q 008280 210 HLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQ 260 (571)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~~~ 260 (571)
..|+.+.+..+.+.+.... .|..... .++.-+|+..|+.....+++..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 4455555555555544321 1211111 123344555566555555555543
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.80 E-value=13 Score=40.26 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=115.3
Q ss_pred HHHHcCChHHHHHHHhhCCC----CChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------HHHHHHHHHH
Q 008280 110 GYIECGQLDKAVELFKVAPV----KSVV--AWTAMISGYMKFGKVDLAEKLFDEMPT-KN----------LVTWNAMIAG 172 (571)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 172 (571)
+....|+.++++.++...+. .+.. ....+.-+.+.+|..+++..++..... .+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556777777777776654 1222 222333344455555556555544321 11 1122233333
Q ss_pred HHHcCC-hhHHHHHHHHHHHCCCCCCHhH--HH--HHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH--HHHh
Q 008280 173 YVENSW-AEDGLKLLRMMIGLGIRPNASS--LS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS--MYCK 245 (571)
Q Consensus 173 ~~~~g~-~~~A~~~~~~m~~~g~~pd~~t--~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~y~~ 245 (571)
++-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.... +..+...++. ++.-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333343 245566666655432 2111 11 12222345566666666666665432 2222222333 3335
Q ss_pred cCCHHHHHHHHHhhCC-CCh-hhHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCcHHHH
Q 008280 246 CGDLEDACKLFLEIQR-KDV-VTWN---AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL--LACNHAGLVDLG 318 (571)
Q Consensus 246 ~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a 318 (571)
.|+.+.+..+.+.+.. .+. +-|. ++.-+|+..|+.....+++..+... ++...-...+ -+....|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHH
Confidence 6676666666666542 232 2233 2334556667765555577776653 2222222222 233344555555
Q ss_pred HHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHhH
Q 008280 319 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL-VEAVDLIKKMPFKPQPAI 369 (571)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 369 (571)
.++++.+.+ ...|.+.--.++.-+....|.. .+|.+++..+...+|..+
T Consensus 614 ~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 614 PRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 555554443 2234444333444444444443 566666666643455443
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.71 E-value=5.8 Score=29.35 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 008280 139 ISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 202 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 202 (571)
+..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++...+.++...| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667899999999999988899999987754 47788888888887777766 45444443
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.44 E-value=15 Score=35.57 Aligned_cols=25 Identities=0% Similarity=-0.221 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHH
Q 008280 200 SLSSVLLGCSHLSSLQLGKQVHQLV 224 (571)
Q Consensus 200 t~~~ll~~~~~~~~~~~a~~~~~~~ 224 (571)
....+...+...|+.++...++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.41 E-value=6.2 Score=29.26 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=42.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH
Q 008280 140 SGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL 201 (571)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 201 (571)
..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667888888888888888888888877754 36677777777776776665 4444444
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.07 E-value=3 Score=34.49 Aligned_cols=115 Identities=4% Similarity=-0.047 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhhC-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH-
Q 008280 235 ALTPLISMYCKCGDLEDACKLFLEIQ-----RKDV-------VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSI- 300 (571)
Q Consensus 235 ~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~- 300 (571)
++-.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++..|...|++..... .-|...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444566666777777776665533 1232 134555666677777777777777653211 111111
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 363 (571)
+...+.. .... .......++.+.---+..+|.+.|++++|+.+++.+|.
T Consensus 102 ~~~~~~~----~ss~----------p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGN----SAST----------PQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccc----cCCC----------cccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111100 0000 00002233445555577777888888888888888753
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.62 E-value=15 Score=36.33 Aligned_cols=184 Identities=10% Similarity=0.061 Sum_probs=117.9
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHH----HHHhcC
Q 008280 177 SWAEDGLKLLRMMIGL-----GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS----MYCKCG 247 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~y~~~g 247 (571)
|++++|++.+..+.+. +..........++..|...++++.....+..+.+..-.. ......+++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 7889999887666542 234456667888999999999999888777666542121 222233333 222233
Q ss_pred CH--HHHHHHHHhhCCC--C--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHH
Q 008280 248 DL--EDACKLFLEIQRK--D--------VVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKPDS---ITFVALLLACN 310 (571)
Q Consensus 248 ~~--~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~ 310 (571)
.. +.-..+.+.+..- + ......|...|...|++.+|..++.++... |..+.. ..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 2233333333211 1 123456788899999999999999998643 322221 24566678899
Q ss_pred hcCcHHHHHHHHHHhHHh-cCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 311 HAGLVDLGIQYFDSMVND-YGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 311 ~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
..+++.+|..++.++... +...+. ...+.+++..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999887432 122222 345678888888999999988877665
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.26 E-value=2.8 Score=31.24 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 280 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
.-+..+-++.+....+-|+.....+.+.||.+.+++..|.++|+.+..+. .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 44666667777777788999999999999999999999999999887753 333556776654
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.52 E-value=8.3 Score=40.77 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHhhCCCChh--h--HHHHHHHHHHcC-ChHHHHHHHHHHHHc------CCCCCHH----
Q 008280 237 TPLISMYCKCGD-LEDACKLFLEIQRKDVV--T--WNAMISGYAQHG-KGEKALRLFDKMKDE------GMKPDSI---- 300 (571)
Q Consensus 237 ~~li~~y~~~g~-~~~A~~~~~~~~~~~~~--~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~---- 300 (571)
.+|+..+...|+ ++.|..+|+++...++. . ...++..+.+.+ +--+|.+++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 334444444555 47788888887654432 2 122232222222 222455555544321 1122111
Q ss_pred --HH-HHH----HHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 008280 301 --TF-VAL----LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363 (571)
Q Consensus 301 --t~-~~l----l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 363 (571)
.+ ..| ..-|...|+++.|+.+-++... -.+.+-.+|..|+..|...|+++.|+-.++.+|.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 00 112 2346678999999999988875 2344588999999999999999999999999863
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.88 E-value=8.8 Score=28.41 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 291 (571)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667666666666552 22222222345667899999999999999999999988765 57788888888888887
Q ss_pred HcCCCCCHHHHHH
Q 008280 292 DEGMKPDSITFVA 304 (571)
Q Consensus 292 ~~g~~p~~~t~~~ 304 (571)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 455555543
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.80 E-value=23 Score=33.14 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHh
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF----DKMKDEGMKPDSITFVALLLACNH 311 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 311 (571)
+.++..=|.+.+++++|.+++-.- ...+.+.|+...|-++- +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344566688889999988876542 33456667766655544 445566788888777777776665
Q ss_pred cCcHHHH-HHHHHHhH---HhcC--CCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhH
Q 008280 312 AGLVDLG-IQYFDSMV---NDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 385 (571)
Q Consensus 312 ~g~~~~a-~~~~~~~~---~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 385 (571)
...-+-. ..+.+.++ .++| -.-++.....+...|.+.|++.+|..-|- .+..+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 4431111 11222221 1123 33457788889999999999999998874 3433444666665554444332
Q ss_pred HHHHHHHHhccCCCCCchhHH-HHHHHHhhccChhHHHHHHHHHHh
Q 008280 386 AEFAAMNLFNLNPANAAGCYV-QLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 386 a~~~~~~~~~~~p~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
|.... .|. ..+--|...|+...|..+++...+
T Consensus 183 ------------~~e~d-lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAP-LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222 222 333345667788888887766553
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.46 E-value=9.4 Score=28.32 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008280 212 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 291 (571)
Q Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 291 (571)
...++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777666666552 22222222345667899999999999999999999988765 46788888888887887
Q ss_pred HcCCCCCHHHHHH
Q 008280 292 DEGMKPDSITFVA 304 (571)
Q Consensus 292 ~~g~~p~~~t~~~ 304 (571)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.22 E-value=1.8 Score=42.09 Aligned_cols=67 Identities=15% Similarity=0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh-----CCCccCC
Q 008280 370 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE-----NNVVKMP 437 (571)
Q Consensus 370 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 437 (571)
...++..+...|+++++...+..++..+|-+.. .+..|..+|.+.|+..+|.+.|+...+ .|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~-~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREP-LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345666777889999999999999999998877 899999999999999999999887653 4766543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.77 E-value=7.7 Score=37.60 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH----hcCCCCChHh
Q 008280 269 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN----DYGIAAKPDH 337 (571)
Q Consensus 269 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 337 (571)
.++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|++.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666666666666666665542 33555666666677777777666666655433 2355555543
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.44 E-value=24 Score=39.78 Aligned_cols=164 Identities=10% Similarity=0.064 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchH
Q 008280 136 TAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 215 (571)
Q Consensus 136 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 215 (571)
..++..+.+.+..+.|.++..-.+. +...--.+..+|...|++++|.+.|++.-. |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3455667777888888776655543 555555677888999999999999976532 232221110 0000
Q ss_pred HHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHhhC----CCCh----hhHHHHHHHHHHcCChHHHHH
Q 008280 216 LGKQVHQLVFKS-PL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQ----RKDV----VTWNAMISGYAQHGKGEKALR 285 (571)
Q Consensus 216 ~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~ 285 (571)
. ...+... .. ..-..-|.-++..+.+.|.++.+.++-.... ..+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0111111 11 1122345667777778888777766554322 2222 268899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 008280 286 LFDKMKDEGMKPDSITFVALLLACNHAGLVDL 317 (571)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 317 (571)
.+..+..... -...+..++...+..|..+.
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9988876543 35566777776676666543
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.36 E-value=43 Score=32.92 Aligned_cols=174 Identities=13% Similarity=0.048 Sum_probs=103.1
Q ss_pred CCHHHHHHHHhhCC-----C----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHH----hcc
Q 008280 146 GKVDLAEKLFDEMP-----T----KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGC----SHL 211 (571)
Q Consensus 146 g~~~~A~~~~~~~~-----~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~~~----~~~ 211 (571)
|+++.|.+.+-.+. . ........++..|...|+++...+.+.-+... |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 67888877664433 1 23446778889999999999988877666543 33222 233444333 223
Q ss_pred CchHHHHH--HHHHHHh--CCCC-C---CcchHHHHHHHHHhcCCHHHHHHHHHhhCC----C-C----hhhHHHHHHHH
Q 008280 212 SSLQLGKQ--VHQLVFK--SPLC-K---DTTALTPLISMYCKCGDLEDACKLFLEIQR----K-D----VVTWNAMISGY 274 (571)
Q Consensus 212 ~~~~~a~~--~~~~~~~--~g~~-~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~ 274 (571)
...+.... +...... .|-. . ...+...|...|...|++.+|.+++..+.. . + +..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332211 1111111 1100 0 122346688999999999999999988752 1 1 34677778889
Q ss_pred HHcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCcHHHHHHH
Q 008280 275 AQHGKGEKALRLFDKMKD----EGMKPDS--ITFVALLLACNHAGLVDLGIQY 321 (571)
Q Consensus 275 ~~~g~~~~A~~~~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 321 (571)
...+++.+|..++.+... ....|+. ..+...+..+.+.+++.+|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999988642 2222221 1334445556666676666544
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.08 E-value=6.4 Score=31.09 Aligned_cols=60 Identities=10% Similarity=0.220 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 282 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 282 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
+..+-++.+....+-|+.......+.+|.+.+++..|.++|+.++.+. .+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 556666677777889999999999999999999999999999987753 444556777664
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.99 E-value=20 Score=28.74 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=43.6
Q ss_pred CChHhHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC-C-HhHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 333 AKPDHYTCMVDLLGRAGKLV---EAVDLIKKM-PFKP-Q-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 333 ~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
|+..+-..+.-++.+..+.+ +++.++++. ...| + ......|.-++.+.|++++|.+..+.+++.+|++..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 44444444445555544332 344444443 1112 2 234455667889999999999999999999999864
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.57 E-value=13 Score=30.70 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCHHH
Q 008280 131 SVVAWTAMISGYMKFGKVDLAEKLFDEMPT--KNLVT 165 (571)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~ 165 (571)
+..+-.-+..+|.+.++.++|+.+++.++. +++..
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 334555566777777777777777777763 44443
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.96 E-value=48 Score=31.94 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHhH---HHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHH
Q 008280 332 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--FKPQPAI---FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 406 (571)
Q Consensus 332 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 406 (571)
.|....+..++.+| +.+++.+..++++... +..|... +..|..... ...+.++. .|-... .+.
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i~--~pYsrI-sl~ 320 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRII--EPYSRV-QVA 320 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHHH--TTCSEE-EHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHHh--Hhhcee-eHH
Confidence 45555566666654 4567877777777652 3345542 222222221 12233333 344444 677
Q ss_pred HHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 407 QLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 407 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
.++..+.- ..+++....-+|...|.
T Consensus 321 ~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 321 HVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 77776643 56788888888887664
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.51 E-value=8.6 Score=28.67 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC
Q 008280 181 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227 (571)
Q Consensus 181 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (571)
+..+-++.+....+.|++....+.|.+|.+.+++..|.++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777777777777777766543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.31 E-value=44 Score=31.23 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=96.1
Q ss_pred HHHHcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 008280 110 GYIECGQL---DKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLL 186 (571)
Q Consensus 110 ~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 186 (571)
.....|++ =+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+...|-++-
T Consensus 21 ~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34455666 5555544 3445556677777777766532 222344445544443332
Q ss_pred ----HHHHHCCCCCCHhHHHHHHHHHhccCc--hH---HHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 008280 187 ----RMMIGLGIRPNASSLSSVLLGCSHLSS--LQ---LGKQVHQLVFKSP--LCKDTTALTPLISMYCKCGDLEDACKL 255 (571)
Q Consensus 187 ----~~m~~~g~~pd~~t~~~ll~~~~~~~~--~~---~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~ 255 (571)
+-..+.++++|......++..+..... .+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 333445566666666555555544332 11 1122223333333 234677888899999999999999998
Q ss_pred HHhhCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 256 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
|-.-.++++..+..|+.-+...+...+ ++...-..++ -|...+++..|...+....+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 853222233566555544444332211 1222222233 34556788888777665554
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.68 E-value=43 Score=37.66 Aligned_cols=60 Identities=8% Similarity=-0.092 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 302 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK---PDHYTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 302 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
|..++..+.+.+.++.+.++-...++..+-.++ ...|..+.......|++++|...+-.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 444555555555555555544444332111110 113455555555555555555555444
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.63 E-value=45 Score=30.90 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHh
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL----FDKMKDEGMKPDSITFVALLLACNH 311 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 311 (571)
+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345666688888888888886542 3345667776666554 4445566788888877777766654
Q ss_pred cCcHH-HHHHHHHHhHH---hcC--CCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc---CC
Q 008280 312 AGLVD-LGIQYFDSMVN---DYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH---KR 382 (571)
Q Consensus 312 ~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 382 (571)
...-+ .=.++.+.+++ +.| -.-++.....+...|.+.|++.+|..-|-. +...|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 11122222221 112 224678888999999999999999987763 2112455666665554444 44
Q ss_pred HhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHh
Q 008280 383 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 430 (571)
Q Consensus 383 ~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 430 (571)
..++-.+. ...+--|...|+...|..+++...+
T Consensus 184 ~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33322111 1222335567888888888876643
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.25 E-value=46 Score=30.83 Aligned_cols=183 Identities=9% Similarity=0.082 Sum_probs=102.3
Q ss_pred HHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHH---
Q 008280 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKL--- 185 (571)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--- 185 (571)
......|++=+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+...|-++
T Consensus 21 ~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 3344456666666544 3455666777777777766533 22334445555444443
Q ss_pred -HHHHHHCCCCCCHhHHHHHHHHHhccC-----chHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 008280 186 -LRMMIGLGIRPNASSLSSVLLGCSHLS-----SLQLGKQVHQLVFKSPL--CKDTTALTPLISMYCKCGDLEDACKLFL 257 (571)
Q Consensus 186 -~~~m~~~g~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~ 257 (571)
.+-..+.+++++......++..+.... ..+-......+..+.|- .-++.....+...|.+.|++.+|+..|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 344445566777666666665554422 12223333444444432 2467788889999999999999998886
Q ss_pred hhCCCChhhHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHh
Q 008280 258 EIQRKDVVTWNAMISGYAQH---GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 328 (571)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 328 (571)
.-...|...+..|+.-+... |...++-- ..-..++ -|...|++..|..+|....+.
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33223455555555544443 33332211 1111222 344567888888888776543
No 270
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.77 E-value=45 Score=29.99 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=6.8
Q ss_pred CChhhHHHHHHHHHHcC
Q 008280 262 KDVVTWNAMISGYAQHG 278 (571)
Q Consensus 262 ~~~~~~~~li~~~~~~g 278 (571)
++...-...+.++.+.|
T Consensus 204 ~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333344444444
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.95 E-value=63 Score=29.09 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHH
Q 008280 274 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 327 (571)
Q Consensus 274 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 327 (571)
..+.|..++|++....-++.. +-|...-..++..++-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666655542 22444444555666666677666666665543
No 272
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.23 E-value=63 Score=29.88 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHhCCCCCCH--hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCC
Q 008280 358 IKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 432 (571)
Q Consensus 358 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 432 (571)
|...+.+|.. .+..+-+..+.+++|+..|..+.++++++.|... ..++|.++...-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhcCC
Confidence 4444555543 4667777888999999999999999999999643 3566777777665543
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.26 E-value=16 Score=32.97 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=75.5
Q ss_pred HHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcC
Q 008280 307 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHK 381 (571)
Q Consensus 307 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g 381 (571)
....+.|.+++++.....-++ .-+.|...-..|++.|+-.|++++|.+-++.. ...|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678999999998888776 45777889999999999999999999887766 223442 344444433
Q ss_pred CHhHHHHHHHHHhc-----cCCCCCchhHHHHHHHH--hhccChhHHHHHHHHHHhC
Q 008280 382 RLDLAEFAAMNLFN-----LNPANAAGCYVQLANIY--AAMKKWDDVARIRLSMKEN 431 (571)
Q Consensus 382 ~~~~a~~~~~~~~~-----~~p~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~ 431 (571)
+..=.+.+. .-+..+..-...|+.+. ...|+.++|.++.....+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333333433 12223331334555554 4579999999999888653
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.32 E-value=43 Score=34.77 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 008280 76 MISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYI 112 (571)
Q Consensus 76 li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~ 112 (571)
+|--+.++|++++|.++.++... .-...+...+..|+
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 45556677777777777766532 11134555555555
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.53 E-value=22 Score=28.06 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhC
Q 008280 182 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 227 (571)
Q Consensus 182 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (571)
..+-++.+...++.|++......|.+|.+.+++..|.++++-+..+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444555556667777777777777777777777777777766543
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.63 E-value=9.8 Score=37.43 Aligned_cols=95 Identities=9% Similarity=-0.039 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhc-CCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHH--
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQPAIFGTL-- 373 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l-- 373 (571)
+...+..-+.+.|+++.|.+.+.++.... +...-...+..++.++...+++..+...++++ ...++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567777788888888888888776531 22222556777777777888888877777665 112232221111
Q ss_pred --HHHHHhcCCHhHHHHHHHHHhc
Q 008280 374 --LSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 374 --~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
+-.+...+++..|-..|-.++.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1123456777777777666654
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.51 E-value=77 Score=28.10 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHH
Q 008280 242 MYCKCGDLEDACKLFL 257 (571)
Q Consensus 242 ~y~~~g~~~~A~~~~~ 257 (571)
..++.|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344555555555554
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.10 E-value=57 Score=31.88 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHH----
Q 008280 266 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT---- 339 (571)
Q Consensus 266 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 339 (571)
++..+...|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+..++.++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444555556666666666666666554322222 22445555666666666666666665543222222222211
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 008280 340 CMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 340 ~li~~~~~~g~~~~A~~~~~~~ 361 (571)
+-+-.+...+++.+|-+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1122233456677776666544
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.12 E-value=71 Score=27.26 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=69.0
Q ss_pred HHHHHHHHhC-CCCCCH---hHHHHHHHHHHhcCCHhHHHHHHHHHhc--cCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 352 VEAVDLIKKM-PFKPQP---AIFGTLLSACRVHKRLDLAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 352 ~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
+++...|... ..+.|+ ..|-..+..| ..++...+..+|..|.. ++-..+. .|...+..+...|++.+|.++|
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSL-FYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444455444 234554 3555555544 24456788888888865 5556666 8889999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEECCEEEEEecCCCCCcccHHHHHHHHHHHHHHHHcCcc
Q 008280 426 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 481 (571)
Q Consensus 426 ~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~ 481 (571)
+.-++++..| .+.+.....+...+|...+++
T Consensus 139 ~~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 139 ELGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 9877766642 133444456677778877763
No 280
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=62.60 E-value=55 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCc
Q 008280 369 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 402 (571)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 402 (571)
.+-.|.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3444555566666666666666666666666643
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.35 E-value=92 Score=25.21 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=50.9
Q ss_pred HHHHHHHHhC-CCCCCHh---HHHHHHHHHHhcCCHhHHHHHHHHHhc--cCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 352 VEAVDLIKKM-PFKPQPA---IFGTLLSACRVHKRLDLAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 352 ~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
+.+.+.|... ..+.|+. .|...+.. .+.+..+|..|.. ++-..+. .|...+..+...|++.+|.+++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~g~~~~A~~Vy 124 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSP-LYIAWAGHLEAQGELQHASAVL 124 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455666554 2345543 44444432 2347788888865 4455555 8889999999999999999999
Q ss_pred HHHHhCCCc
Q 008280 426 LSMKENNVV 434 (571)
Q Consensus 426 ~~m~~~~~~ 434 (571)
+.-++++..
T Consensus 125 ~~Gi~~~A~ 133 (152)
T 4a1g_A 125 QRGIQNQAE 133 (152)
T ss_dssp HHHHHTTCB
T ss_pred HHHHHcCCc
Confidence 887776654
No 282
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=51.22 E-value=5.1 Score=23.75 Aligned_cols=10 Identities=50% Similarity=1.308 Sum_probs=8.7
Q ss_pred cCCccCCCCC
Q 008280 561 KDGTCSCGDY 570 (571)
Q Consensus 561 ~~g~~s~~~~ 570 (571)
++|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 6899999976
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.08 E-value=2.2e+02 Score=29.23 Aligned_cols=238 Identities=10% Similarity=-0.009 Sum_probs=119.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHH----HHHHhccCchHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 008280 178 WAEDGLKLLRMMIGLGIRPNASSLSSV----LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 253 (571)
Q Consensus 178 ~~~~A~~~~~~m~~~g~~pd~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 253 (571)
+.+.|..+|....... ..+......+ .......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677877777765432 2233222222 222233342444444444443332 23333344444555678888888
Q ss_pred HHHHhhCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcC
Q 008280 254 KLFLEIQRKD---VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 330 (571)
Q Consensus 254 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 330 (571)
..|+.|.... ....-=+..++...|+.++|..+|+.+... . +|..++ +..+.|..-. + ....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~-------~-~~~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYE-------L-KIDK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCC-------C-CCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCC-------C-CCCC
Confidence 8888887532 111222445667788888888888887641 1 333333 2222332100 0 0000
Q ss_pred CCCC-h---H--hHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHhccCC---CCC
Q 008280 331 IAAK-P---D--HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP---ANA 401 (571)
Q Consensus 331 ~~~~-~---~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~ 401 (571)
..+. . . .-..-+..+...|....|...+.......+......+.......|..+.++....+....+. ..|
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 0010 0 0 11223456778899999988776652234444444555555678888888876665433220 112
Q ss_pred chhHHHHHHHHhhccChhHHHHHHHHHHhCCCc
Q 008280 402 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 434 (571)
Q Consensus 402 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 434 (571)
. .|..++.-+++.-.++...-.--...|.+..
T Consensus 451 ~-~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~ 482 (618)
T 1qsa_A 451 L-AYNDLFKRYTSGKEIPQSYAMAIARQESAWN 482 (618)
T ss_dssp C-TTHHHHHHHHTTSSSCHHHHHHHHHHHHTTC
T ss_pred c-chHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 2 4556666666555566544332223344443
No 284
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=49.76 E-value=13 Score=26.77 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhhhchHHHHHHHhc
Q 008280 459 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 513 (571)
Q Consensus 459 ~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 513 (571)
++..+|+..+++...+++..|+.||...+-. ....+.++.+...||-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 5667888899999999999999999765521 1223345555566663
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.39 E-value=1e+02 Score=26.07 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCH--hHH-----HHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhc
Q 008280 351 LVEAVDLIKKMPFKPQP--AIF-----GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 415 (571)
Q Consensus 351 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 415 (571)
++.|+.+++.+...-|. ..- -..+..|.+.|.+++|..++++.++..|.+.. .-.-|..+-.+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~-lr~kL~~II~~K 164 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP-FKSKLLMIISQK 164 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT-THHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH-HHHHHHHHHHcc
Confidence 56777788877433331 111 22345699999999999999999888776654 444444443333
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.12 E-value=2.3e+02 Score=28.27 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=94.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhhCCCCh-hhHH-------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----
Q 008280 233 TTALTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWN-------AMISGYAQHGKGEKALRLFDKMKDEGMKPDSI---- 300 (571)
Q Consensus 233 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 300 (571)
..++|.++..|...+.++.|..+..+..-|.. .+-+ -+...+.-.+++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 45678888999999999999999998865532 2222 23455677889999999888876532 22211
Q ss_pred ---H--HHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 008280 301 ---T--FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 375 (571)
Q Consensus 301 ---t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 375 (571)
. |..++... .|++.. ..+|. .+++......|..|+.++ +.|++.+-...++.-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 11111111 243322 11221 112222234477777775 6688776666655431 1
Q ss_pred HHHhcCCHhHHHHHHHHH-----hccCCCCCchhHHHHHHHHhhcc--ChhHHHHHHHHHHhCCCc
Q 008280 376 ACRVHKRLDLAEFAAMNL-----FNLNPANAAGCYVQLANIYAAMK--KWDDVARIRLSMKENNVV 434 (571)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~ 434 (571)
.+.+.|.+....++-..+ ..+..... -..+.++..+.+ ..++|..+...|+..|.-
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~Ys---rIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYK---KISLRDICLKLNLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSS---EECHHHHHHHHHHHHSSCHHHHHHHHHHHTSS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 233444444443332222 11222111 112333333333 346788888889877753
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.85 E-value=1e+02 Score=24.03 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRKDV---VTWNAMISGYAQHGK--GEKALRLFDKMKDEGMKP 297 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 297 (571)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 35577778888888888888888875521 233333444443322 245666777776666443
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.61 E-value=1.2e+02 Score=24.89 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHhC-CCCCCHh---HHHHHHHHHHhcCCHhHHHHHHHHHhc--cCCCCCchhHHHHHHHHhhccChhHHHHHH
Q 008280 352 VEAVDLIKKM-PFKPQPA---IFGTLLSACRVHKRLDLAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIR 425 (571)
Q Consensus 352 ~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 425 (571)
+.+.+.|..- ..+.|+. .|...+..| + .+..+|..|.. ++-..+. .|...+..+...|++.+|.++|
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~Al-fY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQ-FYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444443 2344543 444444433 3 35667777754 4555555 8889999999999999999999
Q ss_pred HHHHhCCCc
Q 008280 426 LSMKENNVV 434 (571)
Q Consensus 426 ~~m~~~~~~ 434 (571)
+.-++++..
T Consensus 120 ~~Gi~~~A~ 128 (164)
T 2wvi_A 120 QEGIQQKAE 128 (164)
T ss_dssp HHHHHTTCB
T ss_pred HHHHHcCCC
Confidence 887776654
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.31 E-value=41 Score=26.41 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCC--HHHHHHHHhhCCCCCcchHHHHHHH
Q 008280 41 YNIMLSCILLNSDDVVAAFDFFQRLPIKD---TASWNTMISGFVQKKN--MAKARDLFLAMPEKNSVSWSAMISG 110 (571)
Q Consensus 41 ~~~ll~~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~d~~~~~~li~~ 110 (571)
.+.++.-|... |+.++|.+.++++..|. .++..++..++-+.++ .+....++..+...+..+-..+..|
T Consensus 10 i~~ll~EY~~~-~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 10 IDMLLKEYLLS-GDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 34555566665 66666666666655441 1233333333333321 2334444444443444444444444
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.99 E-value=2.3e+02 Score=26.74 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHH
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRKD---VVTWNAMISGYAQHGK--GEKALRLFDKMKDEGMKPDSI 300 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 300 (571)
...++.=|...|+.++|.+.++++..|. ......+..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4667888999999999999999998763 2334444444443332 345677777777776554433
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.62 E-value=1.8e+02 Score=25.48 Aligned_cols=208 Identities=12% Similarity=0.044 Sum_probs=113.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhCCCCChh---hHHHHHHHHHcCCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHcC
Q 008280 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVV---SYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTMISGFVQK 83 (571)
Q Consensus 10 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~ 83 (571)
++.+...++.| +++....+++.-..++.. .-.+.+...+.. |+.+-..-+++.-..+ |..-++. +...+..
T Consensus 6 ~~~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 82 (285)
T 1wdy_A 6 NHLLIKAVQNE-DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATP-FLLAAIA 82 (285)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHH
T ss_pred chHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHc
Confidence 44555667777 999999888876543321 112334444666 8888777777664332 2222233 3344556
Q ss_pred CCHHHHHHHHhhCCCC---CcchHHHHHHHHHHcCChHHHHHHHhhCCCCChh------------HHHHHHHHHHhcCCH
Q 008280 84 KNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV------------AWTAMISGYMKFGKV 148 (571)
Q Consensus 84 g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~ 148 (571)
|+.+-+..+++.-..+ |...++. +...+..|+.+-...+++.....+.. ...+.+...++.|+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 7877777777654332 2223333 33445678887777777765433221 011334455678888
Q ss_pred HHHHHHHhhCC-C---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccCchHHHHHHHH
Q 008280 149 DLAEKLFDEMP-T---KNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASS--LSSVLLGCSHLSSLQLGKQVHQ 222 (571)
Q Consensus 149 ~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~ 222 (571)
+-+..+++... . +|..-++.+.. .+..++.....++++.+.+.|..++... -.+.+...+..|+.+-++.+++
T Consensus 162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 162 EVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 88888887632 1 22222333333 3455666556667777777776654321 1122333444566655544443
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.39 E-value=1.1e+02 Score=26.94 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHH
Q 008280 270 MISGYAQHGKGEKALRLFDKMKDE--GMKP----DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 343 (571)
Q Consensus 270 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 343 (571)
-++.+....++++|..++++.... +.++ ........+..-.....-.-+..+.+.+ . . .+++......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~--~-~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L--S-SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H--T-CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H--h-cCCHHHHHHHHH
Confidence 355666677777777777765431 2221 1111122222222222222233333333 2 1 445555666678
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 008280 344 LLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~ 361 (571)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888888888888887554
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.49 E-value=1.2e+02 Score=26.61 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=15.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008280 169 MIAGYVENSWAEDGLKLLRMMIG 191 (571)
Q Consensus 169 li~~~~~~g~~~~A~~~~~~m~~ 191 (571)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667777777777777766543
No 294
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.30 E-value=2e+02 Score=25.42 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=7.4
Q ss_pred CCcchHHHHHHHHHhcCC
Q 008280 231 KDTTALTPLISMYCKCGD 248 (571)
Q Consensus 231 ~~~~~~~~li~~y~~~g~ 248 (571)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444444
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.10 E-value=95 Score=31.00 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCCh--Hh-HHHHHHHHHHcCCHHHHHHHHHhC
Q 008280 301 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP--DH-YTCMVDLLGRAGKLVEAVDLIKKM 361 (571)
Q Consensus 301 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~~ 361 (571)
.++.+++.|.+.+.+++|..+..+..--....++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45555666666666666666665542100000110 11 112344455566666666555543
No 296
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=37.21 E-value=12 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.9
Q ss_pred ceEEEecCCccccccCCccCCC
Q 008280 547 REIIVRDTTRFHHFKDGTCSCG 568 (571)
Q Consensus 547 ~~~~~~~~~~~h~~~~g~~s~~ 568 (571)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4667899999999999986543
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.83 E-value=3.1e+02 Score=29.98 Aligned_cols=85 Identities=11% Similarity=-0.085 Sum_probs=53.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC----------------
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQ---------------- 366 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~---------------- 366 (571)
++..|...|..+-+.++.. -.+.++..--.+..+|...|++++|.+.|+++ ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 6677777888776655432 22334433345778888999999999999887 21110
Q ss_pred -------HhHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 008280 367 -------PAIFGTLLSACRVHKRLDLAEFAAMNLFN 395 (571)
Q Consensus 367 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (571)
...|.-++..+-+++-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11344555556666666666666666654
No 298
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.16 E-value=1.4e+02 Score=27.74 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=7.0
Q ss_pred HcCCHHHHHHHHHh
Q 008280 347 RAGKLVEAVDLIKK 360 (571)
Q Consensus 347 ~~g~~~~A~~~~~~ 360 (571)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 44555555555544
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.69 E-value=35 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhhCCCC
Q 008280 41 YNIMLSCILLNSDDVVAAFDFFQRLPIK 68 (571)
Q Consensus 41 ~~~ll~~~~~~~g~~~~A~~~~~~m~~~ 68 (571)
.+.+|.-|... |+.++|.+.++++..|
T Consensus 12 i~~lL~EY~~~-~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 12 IDMLLKEYLLS-GDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHhCCC
Confidence 34455555555 5666666555555443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.42 E-value=99 Score=25.01 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCC
Q 008280 236 LTPLISMYCKCGDLEDACKLFLEIQRKD---VVTWNAMISGYAQHGK--GEKALRLFDKMKDEGMK 296 (571)
Q Consensus 236 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 296 (571)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3557777888888888888888886552 1233333334433222 33456666666665543
No 301
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.90 E-value=1.4e+02 Score=27.64 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=44.1
Q ss_pred HHhCCCCCCH--hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCC
Q 008280 358 IKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 433 (571)
Q Consensus 358 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 433 (571)
|...+.+|.. .+..+-+....+++|+..|..+.++++++.|+.. ..++|.++...-.+.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE---------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH---------------HHHHHHHHHHHHHHSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhcCCC
Confidence 4444555543 4667777788999999999999999999988632 35667777776665443
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.01 E-value=2.4e+02 Score=23.99 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=40.4
Q ss_pred HHHHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-----hHHHHHHHHHHHhCCC
Q 008280 166 WNAMIAGYV---ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-----LQLGKQVHQLVFKSPL 229 (571)
Q Consensus 166 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 229 (571)
+.-+|+++. +..+++.|+-.+-+|++.| .|....-..++.+.-..|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344566654 4588999999999999999 7766665666666655553 3334444444444553
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.49 E-value=3e+02 Score=24.44 Aligned_cols=109 Identities=9% Similarity=0.149 Sum_probs=48.3
Q ss_pred HcCCCCHHHHHHHHhhCCCCChhhHHHHHHHHHcCCCHHHHHHHHhhCCCC---CcchHHHHHHHHHHcCChHHHHHHHh
Q 008280 49 LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFK 125 (571)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~ 125 (571)
+.. |+.+-+..+++.-..++..-..+.+...+..|+.+-+..+++.-..+ |...++.|. ..+..|+.+-+.-+++
T Consensus 39 ~~~-g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 39 IAD-NNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKLFVK 116 (285)
T ss_dssp HHT-TCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHHHHh
Confidence 445 66666666665432222211223333444566666655555543322 222222222 2334566655555555
Q ss_pred hCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 008280 126 VAPVKSV---VAWTAMISGYMKFGKVDLAEKLFDEMP 159 (571)
Q Consensus 126 ~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 159 (571)
.....+. .-+.+.+...+..|+.+-+..+++.-.
T Consensus 117 ~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 4332211 111233334445566655555555433
No 304
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.43 E-value=2.5e+02 Score=23.62 Aligned_cols=10 Identities=0% Similarity=-0.170 Sum_probs=4.0
Q ss_pred CCHHHHHHHH
Q 008280 53 DDVVAAFDFF 62 (571)
Q Consensus 53 g~~~~A~~~~ 62 (571)
|+++....++
T Consensus 20 g~~~~~~~Ll 29 (240)
T 3eu9_A 20 GIYERCRELV 29 (240)
T ss_dssp TCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 4444433333
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.73 E-value=2.2e+02 Score=24.13 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 008280 166 WNAMIAGYVE---NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 212 (571)
Q Consensus 166 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 212 (571)
+.-+|+++.+ ..+++.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3446666654 5889999999999999987776655555555554444
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.14 E-value=2.7e+02 Score=23.45 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=8.0
Q ss_pred HhCCCCHHHHHHHHhh
Q 008280 17 AKQRGKLKDAQELFDK 32 (571)
Q Consensus 17 ~~~~g~~~~A~~~~~~ 32 (571)
++.| +++..+.+++.
T Consensus 17 ~~~g-~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYG-IYERCRELVEA 31 (240)
T ss_dssp HHTT-CHHHHHHHHHT
T ss_pred HHcC-ChHHHHHHHHc
Confidence 3344 66665555554
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.87 E-value=86 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhhCCCChhhHHHHHHHHHHcCChHHH
Q 008280 247 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 283 (571)
Q Consensus 247 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 283 (571)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766665444
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.37 E-value=6.3e+02 Score=27.48 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=57.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--------------------CC-
Q 008280 138 MISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGI--------------------RP- 196 (571)
Q Consensus 138 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------------------~p- 196 (571)
++..+...|..+-|.++..-.+. ++..-..+..+|...|++++|...|++.-. |+ ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Confidence 44444455555555554444433 333323444555555555555555544321 11 11
Q ss_pred --CHhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHhcC
Q 008280 197 --NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT----ALTPLISMYCKCG 247 (571)
Q Consensus 197 --d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~y~~~g 247 (571)
...-|..++..+-+.+.++.+.++-+.+++.--+.|.. .++.+..+++..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11256778888888888888888888777653233332 4555666655443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.26 E-value=4.5e+02 Score=25.76 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=66.6
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008280 226 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 302 (571)
Q Consensus 226 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 302 (571)
+.|++--...|..-.+.+...|++++|-++--.-++ ++..+.+.+-..-...|+..-.+.+|..+.+.| +.+..-=
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 344444444444455566667777777776655543 344444443333334455666666777666665 3444333
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 008280 303 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 363 (571)
Q Consensus 303 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 363 (571)
.-+.+.-...|+.+.....+. +..+..+.+.- +.. +..+..-|+.+|.+.+.
T Consensus 433 lEl~r~vL~q~r~~llekWl~----e~KL~~SEeLG----Dlv-k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLK----EDKLECSEELG----DLV-KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCSCCCHHHH----HHH-HHHCSHHHHHHHHHHCC
T ss_pred hHHhHHHHhccHHHHHHHHHh----cCCccccHHhH----hhh-hhcCHHHHHHHHHHcCC
Confidence 344444455555544444333 22455554432 222 44566677777766643
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.08 E-value=1.7e+02 Score=23.22 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 008280 288 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352 (571)
Q Consensus 288 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 352 (571)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345667777666533 3444454555556688888888765 44455555556677888888764
No 311
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.49 E-value=5.8e+02 Score=26.39 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=40.9
Q ss_pred HHHHHHHHcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCHHHHHHHHHHHHH---cCChhHH
Q 008280 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGKVDLAEKLFDEMPTKNLVTWNAMIAGYVE---NSWAEDG 182 (571)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A 182 (571)
....++.-.|+++.|++.+-.. +..--..+.-++...|-+.....++..-+.....-+..||..|.+ ..++.+|
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~---~~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF---SEMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT---CHHHHHHHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc---CchhHHHHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Confidence 3556667789999999988766 222222222223334444321111111011112236678887775 5788889
Q ss_pred HHHHHHH
Q 008280 183 LKLLRMM 189 (571)
Q Consensus 183 ~~~~~~m 189 (571)
++.|--+
T Consensus 376 l~Y~~li 382 (661)
T 2qx5_A 376 VEYLVLI 382 (661)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 9887666
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.28 E-value=4.4e+02 Score=24.99 Aligned_cols=345 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCCCCcchHH--HHHHHHHHcCChHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCCHHH
Q 008280 75 TMISGFVQKKNMAKARDLFLAMPEKNSVSWS--AMISGYIECGQLDKAVELFKVAPVKSV--VAWTAMISGYMKFGKVDL 150 (571)
Q Consensus 75 ~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 150 (571)
+.+..-+..|+.+-...+++.-..++..... +.+...+..|+.+-+.-+++.....+. ....+.+...++.|+.+-
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM 95 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_pred HHHHHhhCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHhCC
Q 008280 151 AEKLFDEMPTKNLV--TWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 228 (571)
Q Consensus 151 A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 228 (571)
+.-+++.-..++.. .-.+.+...+..|+.+-+..+++. ..........-.+.+...+..|+.+-++.+++. ...
T Consensus 96 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~ 171 (437)
T 1n11_A 96 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLER--DAH 171 (437)
T ss_dssp HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCC
T ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCC
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhhCCCChhhH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--H
Q 008280 229 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW--NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV--A 304 (571)
Q Consensus 229 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ 304 (571)
.........+.+...+..|+.+-...+++.-..++...+ .+.+...+..|+ .++++.+.+.|..++..... .
T Consensus 172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t 247 (437)
T 1n11_A 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ----VEVARSLLQYGGSANAESVQGVT 247 (437)
T ss_dssp TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCC
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCH
Q 008280 305 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRL 383 (571)
Q Consensus 305 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 383 (571)
.+......|..+-...+++.-. ........-...+...++.|+.+-+.-+++.- .+......-.+.+......|+.
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 324 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSKQA---NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred HHHHHHHCCCHHHHHHHHhcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcH
Q ss_pred hHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChhHHHHHHHHHHhCCCccC
Q 008280 384 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 436 (571)
Q Consensus 384 ~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 436 (571)
+-...+++.-...+..+.. -...|-.+..... .++.+.+.+.|..+.
T Consensus 325 ~~v~~Ll~~gad~n~~~~~-g~t~L~~A~~~g~-----~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 325 KLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGH-----TDIVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred HHHHHHHhcCCCCCCCCCC-CCCHHHHHHHCCh-----HHHHHHHHHCcCCCC
No 313
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.15 E-value=2.6e+02 Score=23.94 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-----hHHHHHHHHHHHhCCC
Q 008280 162 NLVTWNAMIAGYVE---NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-----LQLGKQVHQLVFKSPL 229 (571)
Q Consensus 162 ~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 229 (571)
+-..+.-+|+++.+ ..+++.|+-.+-+|++.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33345556677654 58899999999999999877766665666666554442 3344444444444443
No 314
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=24.72 E-value=3.2e+02 Score=23.20 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchHHHHHHHHHHHhCCCCC
Q 008280 177 SWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 231 (571)
Q Consensus 177 g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 231 (571)
++..++.++|..|...|+--. ..-|......+...|++.+|..+++.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335567777777766654332 2334444444555566666666666555554444
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.71 E-value=83 Score=23.10 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=25.8
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCChhHHH
Q 008280 146 GKVDLAEKLFDEMPTKNLVTWNAMIAGYVENSWAEDGL 183 (571)
Q Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 183 (571)
.+.+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777777777777777776656555443
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.14 E-value=2.5e+02 Score=22.38 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=34.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 008280 289 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 352 (571)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 352 (571)
.+.+.|.+++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 3555666654432 23444555555556677777777664 44445555555567777777754
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.00 E-value=2e+02 Score=23.35 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHHhc-CCCCChHhHHHHHHHHHHcCCHH
Q 008280 281 EKALRLFDK-MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLV 352 (571)
Q Consensus 281 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 352 (571)
+.+++-+.+ +.+.|.+++..- ..++......+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544444 455677776543 345566666666677888888886531 22344444445567788888764
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.67 E-value=5.1e+02 Score=24.35 Aligned_cols=61 Identities=10% Similarity=0.254 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHhHHh
Q 008280 267 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL--VDLGIQYFDSMVND 328 (571)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~ 328 (571)
.+.++.-|...|+.++|...++++...... ..+....+..+..+.++ .+...+++..+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 466778888889999999988888421111 12334444455554432 34556666666653
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.59 E-value=3.3e+02 Score=24.18 Aligned_cols=89 Identities=6% Similarity=0.009 Sum_probs=43.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCCHhHHHHHHHHHhccCCCCCchhHHHHHHHHhhccChh
Q 008280 341 MVDLLGRAGKLVEAVDLIKKMPFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 419 (571)
Q Consensus 341 li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 419 (571)
.+...+..|+.+-+.-+++.-+...+. .-+. .+......|+.+-+..+++.-...+..+.. -....+..-...|..
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~-g~t~~L~~A~~~~~~- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDMMILLLDYMTSTNTNNSL-LFIPDIKLAIDNKDI- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHHHHHHHHHHHHTCTTCCC-BCCTTHHHHHHHTCH-
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHHHHHHHHcCCCCCcccCC-CCChHHHHHHHcCCH-
Confidence 344445667777666666654322232 2333 334445778888777777765444322211 111111112233443
Q ss_pred HHHHHHHHHHhCCCcc
Q 008280 420 DVARIRLSMKENNVVK 435 (571)
Q Consensus 420 ~a~~~~~~m~~~~~~~ 435 (571)
++.+.+.+.|..+
T Consensus 209 ---~~v~~Ll~~gad~ 221 (285)
T 3kea_A 209 ---EMLQALFKYDINI 221 (285)
T ss_dssp ---HHHHHHTTSCBCS
T ss_pred ---HHHHHHHHcCCCC
Confidence 4555566677653
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.54 E-value=3.5e+02 Score=22.76 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=12.2
Q ss_pred HhccCchHHHHHHHHHHHhCCC
Q 008280 208 CSHLSSLQLGKQVHQLVFKSPL 229 (571)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~g~ 229 (571)
.+..|+.+.+..+.+.+.+.|.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcCC
Confidence 3445566655555566655553
No 321
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.22 E-value=2.7e+02 Score=21.08 Aligned_cols=19 Identities=5% Similarity=-0.240 Sum_probs=8.4
Q ss_pred CCChhhHHHHHHHHHcCCC
Q 008280 67 IKDTASWNTMISGFVQKKN 85 (571)
Q Consensus 67 ~~d~~~~~~li~~~~~~g~ 85 (571)
.+|..+-...+.++.+.|+
T Consensus 53 d~~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444444444444444443
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.01 E-value=3.6e+02 Score=21.95 Aligned_cols=179 Identities=8% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHhccC
Q 008280 139 ISGYMKFGKVDLAEKLFDEMP----TKNLVTWNAMIAGYVENSWAEDGLKLLRMMIGLGIRPNASSL--SSVLLGCSHLS 212 (571)
Q Consensus 139 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~--~~ll~~~~~~~ 212 (571)
+...+..|+.+....++..-. .+|..-++.|..+..... .++++.+.+.|..++.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred chHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhh-CC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 008280 213 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QR---KDVVTWNAMISGYAQHGKGEKALRLFD 288 (571)
Q Consensus 213 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 288 (571)
+.+-.+.+++. ....+........+.+...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHHcCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHH
Q 008280 289 KMKDEGMKPDSITFV--ALLLACNHAGLVDLGIQYFD 323 (571)
Q Consensus 289 ~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~ 323 (571)
.+.+.|..|+..... ..+......|+.+-...+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Done!