Query 008281
Match_columns 571
No_of_seqs 205 out of 1887
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 21:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 8E-84 1.7E-88 691.3 47.1 538 29-568 28-584 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 2.5E-84 5.4E-89 666.3 36.3 501 36-570 47-622 (623)
3 PRK02106 choline dehydrogenase 100.0 1.6E-72 3.5E-77 610.2 39.6 487 43-564 2-535 (560)
4 TIGR01810 betA choline dehydro 100.0 1.4E-71 3E-76 599.8 38.8 481 48-563 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 4.8E-66 1E-70 551.4 33.6 482 43-563 4-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 4.1E-50 8.8E-55 422.0 36.3 464 47-563 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 1.1E-41 2.4E-46 341.7 13.3 256 47-313 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 3.2E-33 6.9E-38 249.1 10.7 139 409-556 1-144 (144)
9 PRK06481 fumarate reductase fl 99.6 1.9E-13 4.2E-18 146.6 19.7 59 217-285 196-254 (506)
10 PRK12845 3-ketosteroid-delta-1 99.4 1.5E-12 3.2E-17 140.8 15.6 60 218-287 224-283 (564)
11 PRK08274 tricarballylate dehyd 99.4 1.5E-12 3.2E-17 139.1 15.3 64 217-290 137-200 (466)
12 PRK07121 hypothetical protein; 99.4 3.2E-12 7E-17 137.2 16.4 63 217-288 183-245 (492)
13 PRK12835 3-ketosteroid-delta-1 99.4 3E-12 6.5E-17 139.3 15.3 58 219-285 221-278 (584)
14 PRK12844 3-ketosteroid-delta-1 99.4 6.1E-12 1.3E-16 136.3 16.7 60 219-288 216-275 (557)
15 PF00890 FAD_binding_2: FAD bi 99.4 3.3E-12 7.1E-17 134.6 13.1 61 218-289 148-209 (417)
16 COG2081 Predicted flavoprotein 99.4 5.9E-12 1.3E-16 124.5 13.1 168 45-286 2-171 (408)
17 PRK12837 3-ketosteroid-delta-1 99.4 1.3E-11 2.8E-16 132.8 16.9 57 221-287 184-240 (513)
18 PRK06175 L-aspartate oxidase; 99.3 1.7E-11 3.7E-16 128.9 15.4 56 217-283 134-190 (433)
19 PRK12834 putative FAD-binding 99.3 3.5E-11 7.6E-16 130.6 16.8 35 44-78 2-37 (549)
20 PLN00128 Succinate dehydrogena 99.3 6.7E-11 1.4E-15 129.5 17.0 58 217-283 193-251 (635)
21 PF03486 HI0933_like: HI0933-l 99.3 5.2E-12 1.1E-16 130.4 7.9 166 47-285 1-169 (409)
22 PRK06263 sdhA succinate dehydr 99.3 6.4E-11 1.4E-15 128.4 16.4 58 217-283 140-198 (543)
23 PRK07843 3-ketosteroid-delta-1 99.3 8.6E-11 1.9E-15 127.5 17.2 62 219-290 216-277 (557)
24 PRK07573 sdhA succinate dehydr 99.3 6.4E-11 1.4E-15 130.1 15.8 54 220-283 179-233 (640)
25 TIGR01813 flavo_cyto_c flavocy 99.3 3.1E-11 6.8E-16 127.9 13.1 60 217-285 136-195 (439)
26 PRK12839 hypothetical protein; 99.3 7.7E-11 1.7E-15 127.8 15.7 62 217-287 220-281 (572)
27 PRK06452 sdhA succinate dehydr 99.3 1.1E-10 2.5E-15 126.7 16.5 56 217-282 142-198 (566)
28 PRK11101 glpA sn-glycerol-3-ph 99.2 1.1E-10 2.4E-15 126.4 16.0 63 218-291 156-219 (546)
29 PTZ00139 Succinate dehydrogena 99.2 1.2E-10 2.7E-15 127.4 15.6 58 217-283 172-230 (617)
30 PRK08958 sdhA succinate dehydr 99.2 1.6E-10 3.5E-15 125.9 16.5 58 217-283 149-207 (588)
31 PRK12842 putative succinate de 99.2 2.3E-10 5E-15 124.9 17.7 61 218-288 221-281 (574)
32 PRK09078 sdhA succinate dehydr 99.2 1.6E-10 3.4E-15 126.4 15.5 58 217-283 155-213 (598)
33 PRK06134 putative FAD-binding 99.2 2E-10 4.4E-15 125.3 16.3 61 217-287 223-283 (581)
34 PRK12843 putative FAD-binding 99.2 2.7E-10 5.8E-15 124.3 16.9 62 217-288 227-288 (578)
35 PTZ00306 NADH-dependent fumara 99.2 1.9E-10 4.2E-15 134.4 16.6 58 223-285 559-623 (1167)
36 PLN02815 L-aspartate oxidase 99.2 1.3E-10 2.8E-15 126.1 13.9 61 217-283 161-223 (594)
37 PRK07395 L-aspartate oxidase; 99.2 1.3E-10 2.8E-15 125.6 13.8 52 222-283 146-198 (553)
38 PRK05945 sdhA succinate dehydr 99.2 2.4E-10 5.3E-15 124.6 15.4 57 217-283 141-198 (575)
39 PRK09077 L-aspartate oxidase; 99.2 2.8E-10 6.1E-15 123.1 15.8 57 222-283 150-208 (536)
40 PRK07804 L-aspartate oxidase; 99.2 4.4E-10 9.4E-15 121.6 16.0 38 43-80 13-51 (541)
41 PRK07057 sdhA succinate dehydr 99.2 5E-10 1.1E-14 122.3 16.5 58 217-283 154-212 (591)
42 PRK08071 L-aspartate oxidase; 99.2 3.4E-10 7.4E-15 121.5 14.9 50 224-283 142-191 (510)
43 PRK08626 fumarate reductase fl 99.2 2.4E-10 5.3E-15 125.7 13.9 55 219-283 166-221 (657)
44 PRK08641 sdhA succinate dehydr 99.2 3E-10 6.4E-15 124.0 14.4 50 225-283 151-201 (589)
45 PRK09231 fumarate reductase fl 99.1 6.6E-10 1.4E-14 121.1 15.6 52 222-283 145-197 (582)
46 PRK08205 sdhA succinate dehydr 99.1 6.9E-10 1.5E-14 121.2 15.2 61 217-283 146-207 (583)
47 TIGR00551 nadB L-aspartate oxi 99.1 7.8E-10 1.7E-14 118.5 15.2 56 217-283 134-190 (488)
48 COG0579 Predicted dehydrogenas 99.1 1.4E-09 3E-14 111.3 15.9 61 217-291 159-219 (429)
49 PRK06069 sdhA succinate dehydr 99.1 7.4E-10 1.6E-14 121.0 14.9 57 217-283 143-201 (577)
50 TIGR01176 fum_red_Fp fumarate 99.1 8.6E-10 1.9E-14 119.9 15.1 52 222-283 144-196 (580)
51 TIGR01812 sdhA_frdA_Gneg succi 99.1 8.5E-10 1.9E-14 120.6 14.5 57 217-283 135-192 (566)
52 PRK07803 sdhA succinate dehydr 99.1 8.7E-10 1.9E-14 121.1 14.5 35 45-79 7-42 (626)
53 PLN02464 glycerol-3-phosphate 99.1 6.3E-10 1.4E-14 122.0 13.3 65 217-291 238-304 (627)
54 PF01266 DAO: FAD dependent ox 99.1 1.4E-10 3.1E-15 119.3 7.2 59 217-291 153-211 (358)
55 PF01946 Thi4: Thi4 family; PD 99.1 1.9E-10 4.1E-15 104.9 5.6 36 44-79 15-51 (230)
56 TIGR01811 sdhA_Bsu succinate d 99.0 2.1E-09 4.4E-14 117.5 14.2 52 223-283 145-197 (603)
57 PTZ00383 malate:quinone oxidor 99.0 4.3E-09 9.3E-14 111.6 16.0 41 39-79 38-81 (497)
58 PRK07512 L-aspartate oxidase; 99.0 2.2E-09 4.8E-14 115.4 13.6 56 217-283 142-198 (513)
59 PRK12266 glpD glycerol-3-phosp 99.0 2.3E-09 5E-14 115.2 12.9 38 43-80 3-41 (508)
60 PRK06854 adenylylsulfate reduc 99.0 4.7E-09 1E-13 115.0 14.9 54 219-282 140-195 (608)
61 PRK04176 ribulose-1,5-biphosph 99.0 2.2E-09 4.8E-14 104.4 11.0 36 44-79 23-59 (257)
62 PRK08275 putative oxidoreducta 99.0 3.1E-09 6.7E-14 115.6 13.2 57 217-282 143-200 (554)
63 PRK13369 glycerol-3-phosphate 99.0 4.2E-09 9.1E-14 113.3 13.7 39 42-80 2-41 (502)
64 COG1635 THI4 Ribulose 1,5-bisp 99.0 1.7E-09 3.7E-14 97.9 8.2 35 45-79 29-64 (262)
65 TIGR02061 aprA adenosine phosp 99.0 6.5E-09 1.4E-13 113.0 14.2 55 221-282 136-191 (614)
66 TIGR01320 mal_quin_oxido malat 99.0 2.8E-08 6.1E-13 105.7 18.6 64 217-291 184-248 (483)
67 TIGR00292 thiazole biosynthesi 99.0 4.8E-09 1E-13 101.7 11.4 36 44-79 19-55 (254)
68 PRK13800 putative oxidoreducta 99.0 8.1E-09 1.8E-13 118.2 15.0 50 223-282 155-205 (897)
69 PRK12409 D-amino acid dehydrog 98.9 6.4E-09 1.4E-13 109.4 12.8 33 47-79 2-35 (410)
70 TIGR01373 soxB sarcosine oxida 98.9 2.2E-08 4.7E-13 105.2 16.8 39 41-79 25-66 (407)
71 COG0578 GlpA Glycerol-3-phosph 98.9 1.6E-08 3.6E-13 105.7 14.5 60 220-291 173-233 (532)
72 PRK11259 solA N-methyltryptoph 98.9 1.2E-08 2.7E-13 105.9 13.4 35 45-79 2-37 (376)
73 COG1053 SdhA Succinate dehydro 98.9 7.2E-09 1.6E-13 111.1 11.1 39 43-81 3-42 (562)
74 TIGR03329 Phn_aa_oxid putative 98.9 8.5E-09 1.8E-13 109.8 11.5 35 44-78 22-59 (460)
75 PRK05257 malate:quinone oxidor 98.9 2.2E-08 4.8E-13 106.6 14.2 36 44-79 3-41 (494)
76 TIGR02485 CobZ_N-term precorri 98.9 1.1E-08 2.4E-13 108.1 11.5 60 217-288 129-189 (432)
77 PLN02661 Putative thiazole syn 98.9 1.1E-08 2.4E-13 101.9 10.5 35 45-79 91-127 (357)
78 COG0029 NadB Aspartate oxidase 98.9 2E-08 4.2E-13 102.1 11.8 56 217-281 139-195 (518)
79 PTZ00363 rab-GDP dissociation 98.9 3.4E-08 7.3E-13 103.3 14.0 43 43-85 1-44 (443)
80 TIGR01377 soxA_mon sarcosine o 98.8 3.5E-08 7.5E-13 102.7 13.9 33 47-79 1-34 (380)
81 PRK08401 L-aspartate oxidase; 98.8 4.5E-08 9.7E-13 104.3 14.6 32 47-78 2-34 (466)
82 PRK00711 D-amino acid dehydrog 98.8 4.3E-08 9.2E-13 103.3 13.6 32 48-79 2-34 (416)
83 PRK11728 hydroxyglutarate oxid 98.8 2.9E-08 6.3E-13 103.7 12.1 34 46-79 2-38 (393)
84 KOG2820 FAD-dependent oxidored 98.8 2.3E-08 5.1E-13 96.2 9.7 39 43-81 4-43 (399)
85 PRK10157 putative oxidoreducta 98.8 2.6E-08 5.5E-13 105.0 10.6 36 45-80 4-40 (428)
86 PRK13339 malate:quinone oxidor 98.8 2.1E-07 4.6E-12 98.5 16.2 34 44-77 4-40 (497)
87 COG3573 Predicted oxidoreducta 98.7 2.8E-07 6E-12 88.5 13.9 36 44-79 3-39 (552)
88 COG0644 FixC Dehydrogenases (f 98.7 1E-07 2.2E-12 99.6 11.8 37 45-81 2-39 (396)
89 PRK10015 oxidoreductase; Provi 98.7 1.3E-07 2.9E-12 99.5 12.8 37 44-80 3-40 (429)
90 PF12831 FAD_oxidored: FAD dep 98.7 1E-08 2.2E-13 108.0 4.2 58 220-291 99-156 (428)
91 PRK13977 myosin-cross-reactive 98.7 6.7E-07 1.5E-11 94.8 17.7 63 217-283 232-294 (576)
92 TIGR03364 HpnW_proposed FAD de 98.7 7.2E-08 1.6E-12 99.7 10.4 33 47-79 1-34 (365)
93 PRK05192 tRNA uridine 5-carbox 98.7 1.5E-07 3.3E-12 100.6 12.0 35 44-78 2-37 (618)
94 PRK01747 mnmC bifunctional tRN 98.7 1.3E-07 2.9E-12 105.3 11.9 34 46-79 260-294 (662)
95 KOG1298 Squalene monooxygenase 98.6 7.7E-08 1.7E-12 94.1 8.0 55 220-285 157-211 (509)
96 COG1233 Phytoene dehydrogenase 98.6 2.7E-07 5.8E-12 98.7 12.2 38 45-82 2-40 (487)
97 KOG0042 Glycerol-3-phosphate d 98.6 9.4E-08 2E-12 97.4 7.0 74 207-290 217-294 (680)
98 COG3380 Predicted NAD/FAD-depe 98.6 3.5E-07 7.5E-12 85.8 10.2 32 48-79 3-35 (331)
99 TIGR00275 flavoprotein, HI0933 98.6 4.7E-07 1E-11 94.5 11.8 31 50-80 1-32 (400)
100 PF06039 Mqo: Malate:quinone o 98.5 2.2E-06 4.8E-11 87.2 15.6 64 217-291 187-252 (488)
101 PRK06185 hypothetical protein; 98.5 7.2E-07 1.6E-11 93.7 12.0 37 42-78 2-39 (407)
102 TIGR02730 carot_isom carotene 98.5 6.2E-07 1.3E-11 96.5 11.5 71 204-288 222-292 (493)
103 PLN02172 flavin-containing mon 98.5 7.4E-07 1.6E-11 94.3 11.5 39 43-81 7-46 (461)
104 COG0665 DadA Glycine/D-amino a 98.5 1.9E-06 4.1E-11 89.9 14.3 37 44-80 2-39 (387)
105 PF13738 Pyr_redox_3: Pyridine 98.5 1.8E-07 3.8E-12 88.2 5.7 58 217-289 87-145 (203)
106 PLN02985 squalene monooxygenas 98.5 4.9E-06 1.1E-10 89.4 17.4 37 42-78 39-76 (514)
107 PRK08773 2-octaprenyl-3-methyl 98.4 2E-06 4.3E-11 89.9 12.5 38 42-79 2-40 (392)
108 KOG2415 Electron transfer flav 98.4 8.1E-07 1.8E-11 87.8 8.5 69 217-290 188-266 (621)
109 KOG2404 Fumarate reductase, fl 98.4 1.5E-06 3.3E-11 83.2 9.8 49 225-283 159-207 (477)
110 PRK07364 2-octaprenyl-6-methox 98.4 3.4E-06 7.5E-11 88.8 13.2 37 44-80 16-53 (415)
111 PF01134 GIDA: Glucose inhibit 98.4 1.2E-06 2.5E-11 89.1 9.1 47 221-282 106-152 (392)
112 COG2509 Uncharacterized FAD-de 98.3 6.8E-06 1.5E-10 83.0 13.2 214 42-297 14-245 (486)
113 TIGR02734 crtI_fam phytoene de 98.3 1E-06 2.2E-11 95.3 7.7 70 205-288 213-282 (502)
114 TIGR03378 glycerol3P_GlpB glyc 98.3 1.2E-05 2.7E-10 82.6 14.3 60 220-291 272-331 (419)
115 PRK06126 hypothetical protein; 98.3 1.9E-05 4E-10 86.3 16.6 36 44-79 5-41 (545)
116 COG2072 TrkA Predicted flavopr 98.3 8.9E-06 1.9E-10 85.7 13.5 41 42-82 4-46 (443)
117 PRK06847 hypothetical protein; 98.2 8.3E-06 1.8E-10 84.6 11.5 36 44-79 2-38 (375)
118 PRK07208 hypothetical protein; 98.2 1.1E-05 2.3E-10 86.8 12.7 40 43-82 1-41 (479)
119 KOG4254 Phytoene desaturase [C 98.2 7.8E-06 1.7E-10 82.0 10.3 69 206-288 259-327 (561)
120 PLN02697 lycopene epsilon cycl 98.2 7.5E-06 1.6E-10 87.6 11.0 34 44-77 106-140 (529)
121 PRK05714 2-octaprenyl-3-methyl 98.2 2.8E-05 6.1E-10 81.6 14.6 33 46-78 2-35 (405)
122 PRK06834 hypothetical protein; 98.2 2E-05 4.3E-10 84.5 13.5 35 45-79 2-37 (488)
123 KOG2844 Dimethylglycine dehydr 98.2 8.3E-06 1.8E-10 85.5 9.7 75 201-291 174-251 (856)
124 KOG2853 Possible oxidoreductas 98.1 4.8E-05 1E-09 73.7 13.8 37 45-81 85-126 (509)
125 PRK08244 hypothetical protein; 98.1 2.1E-05 4.5E-10 84.8 12.8 34 46-79 2-36 (493)
126 PRK06183 mhpA 3-(3-hydroxyphen 98.1 1E-05 2.2E-10 88.2 10.4 37 44-80 8-45 (538)
127 TIGR01988 Ubi-OHases Ubiquinon 98.1 2.2E-05 4.7E-10 81.8 12.2 33 48-80 1-34 (385)
128 TIGR01984 UbiH 2-polyprenyl-6- 98.1 4.5E-05 9.6E-10 79.4 14.4 33 48-80 1-35 (382)
129 PRK06184 hypothetical protein; 98.1 2.4E-05 5.3E-10 84.5 12.2 35 45-79 2-37 (502)
130 PRK05675 sdhA succinate dehydr 98.1 4.2E-05 9.1E-10 83.5 13.8 58 217-283 132-190 (570)
131 PRK07333 2-octaprenyl-6-methox 98.1 1.6E-05 3.6E-10 83.3 10.3 34 46-79 1-37 (403)
132 PF00743 FMO-like: Flavin-bind 98.1 6.9E-06 1.5E-10 88.2 7.0 35 48-82 3-38 (531)
133 TIGR00136 gidA glucose-inhibit 98.0 2.6E-05 5.7E-10 83.6 10.5 32 47-78 1-33 (617)
134 PRK15317 alkyl hydroperoxide r 98.0 3.7E-05 8.1E-10 83.2 11.6 33 44-76 209-242 (517)
135 PF13450 NAD_binding_8: NAD(P) 98.0 4.6E-06 9.9E-11 63.1 3.0 31 51-81 1-32 (68)
136 COG0562 Glf UDP-galactopyranos 98.0 7.7E-06 1.7E-10 78.8 4.4 38 46-83 1-39 (374)
137 KOG1399 Flavin-containing mono 97.9 3.8E-05 8.3E-10 80.1 9.5 37 45-81 5-42 (448)
138 KOG2665 Predicted FAD-dependen 97.9 6.2E-05 1.3E-09 72.3 9.9 41 40-80 42-85 (453)
139 COG0654 UbiH 2-polyprenyl-6-me 97.9 7.5E-05 1.6E-09 77.8 11.4 32 46-77 2-34 (387)
140 PLN00093 geranylgeranyl diphos 97.9 9E-06 1.9E-10 86.0 4.5 37 42-78 35-72 (450)
141 PRK07236 hypothetical protein; 97.9 0.00022 4.7E-09 74.4 14.3 35 44-78 4-39 (386)
142 PRK11445 putative oxidoreducta 97.9 0.00014 3.1E-09 74.6 12.8 33 47-79 2-34 (351)
143 TIGR03140 AhpF alkyl hydropero 97.9 6.2E-05 1.3E-09 81.4 10.4 33 44-76 210-243 (515)
144 PTZ00058 glutathione reductase 97.9 2.1E-05 4.5E-10 85.2 6.5 35 44-78 46-81 (561)
145 PRK06370 mercuric reductase; V 97.9 1.3E-05 2.8E-10 85.6 4.7 38 43-80 2-40 (463)
146 TIGR02023 BchP-ChlP geranylger 97.8 1E-05 2.2E-10 84.4 3.4 31 47-77 1-32 (388)
147 TIGR01421 gluta_reduc_1 glutat 97.8 1.3E-05 2.9E-10 85.0 3.9 34 45-78 1-35 (450)
148 PRK07494 2-octaprenyl-6-methox 97.8 1.8E-05 3.9E-10 82.6 4.8 38 42-79 3-41 (388)
149 PRK06467 dihydrolipoamide dehy 97.8 1.7E-05 3.7E-10 84.7 4.5 35 44-78 2-37 (471)
150 TIGR02032 GG-red-SF geranylger 97.8 1.5E-05 3.2E-10 79.6 3.9 34 47-80 1-35 (295)
151 PRK06116 glutathione reductase 97.8 1.5E-05 3.2E-10 84.9 4.0 35 44-78 2-37 (450)
152 PRK07588 hypothetical protein; 97.8 5.7E-05 1.2E-09 78.9 8.3 32 48-79 2-34 (391)
153 TIGR01816 sdhA_forward succina 97.8 0.00026 5.7E-09 77.3 13.6 57 217-283 125-182 (565)
154 PRK08020 ubiF 2-octaprenyl-3-m 97.8 1.9E-05 4.1E-10 82.5 4.1 35 44-78 3-38 (391)
155 TIGR01424 gluta_reduc_2 glutat 97.8 1.8E-05 3.9E-10 84.1 3.9 32 46-77 2-34 (446)
156 COG0445 GidA Flavin-dependent 97.8 9.7E-05 2.1E-09 76.4 8.9 35 44-78 2-37 (621)
157 PRK05249 soluble pyridine nucl 97.8 2.1E-05 4.5E-10 84.1 4.4 37 44-80 3-40 (461)
158 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00022 4.8E-09 77.3 12.4 64 217-291 134-198 (516)
159 PRK08010 pyridine nucleotide-d 97.8 2E-05 4.3E-10 83.7 4.0 35 45-79 2-37 (441)
160 PF01494 FAD_binding_3: FAD bi 97.7 1.9E-05 4.2E-10 80.9 3.5 35 46-80 1-36 (356)
161 COG1249 Lpd Pyruvate/2-oxoglut 97.7 2.4E-05 5.2E-10 81.9 4.2 35 44-78 2-37 (454)
162 PRK05976 dihydrolipoamide dehy 97.7 2.1E-05 4.6E-10 84.2 4.0 36 43-78 1-37 (472)
163 PRK08013 oxidoreductase; Provi 97.7 2.5E-05 5.4E-10 81.8 4.1 35 45-79 2-37 (400)
164 TIGR01372 soxA sarcosine oxida 97.7 0.00031 6.7E-09 81.7 13.3 64 217-291 357-420 (985)
165 PRK07251 pyridine nucleotide-d 97.7 2.8E-05 6E-10 82.5 4.1 34 45-78 2-36 (438)
166 KOG2960 Protein involved in th 97.7 3.6E-05 7.8E-10 69.6 4.0 35 46-80 76-113 (328)
167 PF13434 K_oxygenase: L-lysine 97.7 0.00019 4.1E-09 73.0 9.8 61 216-285 99-160 (341)
168 PRK09126 hypothetical protein; 97.7 3E-05 6.4E-10 81.1 3.8 35 46-80 3-38 (392)
169 PLN02546 glutathione reductase 97.7 3.9E-05 8.6E-10 83.1 4.6 33 44-76 77-110 (558)
170 PRK06115 dihydrolipoamide dehy 97.7 3.5E-05 7.6E-10 82.3 4.0 32 46-77 3-35 (466)
171 PRK07818 dihydrolipoamide dehy 97.6 3.6E-05 7.7E-10 82.3 4.0 35 45-79 3-38 (466)
172 TIGR02028 ChlP geranylgeranyl 97.6 2.9E-05 6.3E-10 81.1 3.2 32 47-78 1-33 (398)
173 PRK07045 putative monooxygenas 97.6 3.4E-05 7.4E-10 80.5 3.8 37 44-80 3-40 (388)
174 TIGR00031 UDP-GALP_mutase UDP- 97.6 4E-05 8.7E-10 78.5 4.0 36 47-82 2-38 (377)
175 PRK07608 ubiquinone biosynthes 97.6 4E-05 8.7E-10 79.9 4.1 35 46-80 5-40 (388)
176 COG2907 Predicted NAD/FAD-bind 97.6 0.00078 1.7E-08 65.9 12.2 41 45-85 7-47 (447)
177 KOG0029 Amine oxidase [Seconda 97.6 4.8E-05 1E-09 80.8 4.4 39 44-82 13-52 (501)
178 PRK14694 putative mercuric red 97.6 4.5E-05 9.7E-10 81.6 4.2 36 43-78 3-39 (468)
179 PRK08850 2-octaprenyl-6-methox 97.6 4E-05 8.6E-10 80.5 3.7 34 44-77 2-36 (405)
180 PRK08849 2-octaprenyl-3-methyl 97.6 4.2E-05 9E-10 79.7 3.7 33 46-78 3-36 (384)
181 PRK05868 hypothetical protein; 97.6 0.00088 1.9E-08 69.4 13.2 32 48-79 3-35 (372)
182 PRK06292 dihydrolipoamide dehy 97.6 5.1E-05 1.1E-09 81.1 3.9 34 45-78 2-36 (460)
183 PRK07190 hypothetical protein; 97.6 5.2E-05 1.1E-09 81.2 3.9 37 44-80 3-40 (487)
184 PRK07845 flavoprotein disulfid 97.6 0.00028 6.1E-09 75.4 9.5 31 48-78 3-34 (466)
185 PLN02463 lycopene beta cyclase 97.6 4.8E-05 1E-09 80.1 3.6 35 44-78 26-61 (447)
186 COG0492 TrxB Thioredoxin reduc 97.6 4.8E-05 1E-09 75.6 3.3 34 45-78 2-37 (305)
187 PLN02507 glutathione reductase 97.6 4.7E-05 1E-09 81.8 3.5 33 44-76 23-56 (499)
188 PRK09897 hypothetical protein; 97.6 0.0006 1.3E-08 73.2 11.8 34 47-80 2-38 (534)
189 TIGR03143 AhpF_homolog putativ 97.6 5.3E-05 1.2E-09 82.6 3.9 36 44-79 2-38 (555)
190 PRK06416 dihydrolipoamide dehy 97.6 5.3E-05 1.1E-09 81.0 3.7 34 45-78 3-37 (462)
191 PF06100 Strep_67kDa_ant: Stre 97.5 0.0027 5.9E-08 65.8 15.6 58 220-281 216-273 (500)
192 PF05834 Lycopene_cycl: Lycope 97.5 6.3E-05 1.4E-09 77.9 3.9 33 48-80 1-36 (374)
193 PTZ00153 lipoamide dehydrogena 97.5 6.5E-05 1.4E-09 82.6 4.1 32 46-77 116-148 (659)
194 TIGR01350 lipoamide_DH dihydro 97.5 7E-05 1.5E-09 80.1 4.2 32 46-77 1-33 (461)
195 TIGR01423 trypano_reduc trypan 97.5 8.2E-05 1.8E-09 79.5 4.6 33 45-77 2-36 (486)
196 PRK06327 dihydrolipoamide dehy 97.5 6.3E-05 1.4E-09 80.6 3.8 33 44-76 2-35 (475)
197 PLN02676 polyamine oxidase 97.5 0.00012 2.7E-09 78.2 6.0 39 44-82 24-64 (487)
198 PRK13748 putative mercuric red 97.5 7.3E-05 1.6E-09 82.0 4.1 34 45-78 97-131 (561)
199 TIGR01790 carotene-cycl lycope 97.5 8E-05 1.7E-09 77.7 3.9 32 48-79 1-33 (388)
200 TIGR02053 MerA mercuric reduct 97.5 7.6E-05 1.6E-09 79.8 3.7 33 47-79 1-34 (463)
201 TIGR01292 TRX_reduct thioredox 97.5 7.9E-05 1.7E-09 74.6 3.4 32 47-78 1-33 (300)
202 PTZ00367 squalene epoxidase; P 97.5 0.00017 3.6E-09 78.3 6.1 35 44-78 31-66 (567)
203 PTZ00052 thioredoxin reductase 97.5 8.6E-05 1.9E-09 79.9 3.8 33 45-77 4-37 (499)
204 TIGR02733 desat_CrtD C-3',4' d 97.5 9.5E-05 2.1E-09 79.7 4.1 37 46-82 1-38 (492)
205 PRK06996 hypothetical protein; 97.4 0.00011 2.5E-09 76.8 4.2 38 42-79 7-49 (398)
206 PF04820 Trp_halogenase: Trypt 97.4 0.00024 5.3E-09 75.3 6.1 33 48-80 1-37 (454)
207 PRK06617 2-octaprenyl-6-methox 97.4 0.00012 2.6E-09 76.0 3.6 32 47-78 2-34 (374)
208 KOG2852 Possible oxidoreductas 97.4 0.00061 1.3E-08 64.8 7.8 37 44-80 8-51 (380)
209 PRK14727 putative mercuric red 97.4 0.00018 3.9E-09 77.1 4.9 36 45-80 15-51 (479)
210 PRK05732 2-octaprenyl-6-methox 97.4 0.00014 3.1E-09 76.0 3.9 34 45-78 2-39 (395)
211 PLN02568 polyamine oxidase 97.4 0.00018 3.8E-09 77.8 4.6 40 43-82 2-47 (539)
212 PLN02268 probable polyamine ox 97.3 0.00016 3.4E-09 76.8 4.1 37 47-83 1-38 (435)
213 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.00014 2.9E-09 76.0 3.5 34 46-79 2-36 (390)
214 PRK08243 4-hydroxybenzoate 3-m 97.3 0.00014 3E-09 76.0 3.5 34 46-79 2-36 (392)
215 PRK08163 salicylate hydroxylas 97.3 0.00016 3.5E-09 75.6 3.9 35 45-79 3-38 (396)
216 PRK08132 FAD-dependent oxidore 97.3 0.00026 5.5E-09 77.4 5.2 36 44-79 21-57 (547)
217 TIGR01989 COQ6 Ubiquinone bios 97.3 0.00017 3.7E-09 76.4 3.6 32 47-78 1-37 (437)
218 COG1231 Monoamine oxidase [Ami 97.3 0.00026 5.7E-09 72.1 4.4 39 44-82 5-44 (450)
219 PRK10262 thioredoxin reductase 97.3 0.00022 4.7E-09 72.4 4.0 36 43-78 3-39 (321)
220 PRK11883 protoporphyrinogen ox 97.2 0.00021 4.6E-09 76.1 3.7 35 48-82 2-39 (451)
221 PLN02576 protoporphyrinogen ox 97.2 0.00028 6E-09 76.3 4.7 39 44-82 10-50 (496)
222 PRK07233 hypothetical protein; 97.2 0.00023 5E-09 75.4 3.9 36 48-83 1-37 (434)
223 TIGR03862 flavo_PP4765 unchara 97.2 0.0033 7.1E-08 64.4 12.0 88 173-286 57-145 (376)
224 PRK05329 anaerobic glycerol-3- 97.2 0.00021 4.7E-09 74.4 3.4 33 46-78 2-35 (422)
225 PRK13512 coenzyme A disulfide 97.2 0.0025 5.5E-08 67.5 11.1 32 48-79 3-37 (438)
226 TIGR01789 lycopene_cycl lycope 97.2 0.00034 7.3E-09 72.3 4.2 32 48-79 1-35 (370)
227 PRK06753 hypothetical protein; 97.2 0.00027 5.9E-09 73.3 3.4 33 48-80 2-35 (373)
228 TIGR03452 mycothione_red mycot 97.1 0.00042 9E-09 73.7 4.5 32 46-78 2-33 (452)
229 PRK08294 phenol 2-monooxygenas 97.1 0.00044 9.5E-09 76.5 4.6 37 43-79 29-67 (634)
230 TIGR01438 TGR thioredoxin and 97.1 0.00033 7.1E-09 75.1 3.4 32 46-77 2-34 (484)
231 KOG2311 NAD/FAD-utilizing prot 97.1 0.00094 2E-08 67.8 6.3 34 44-77 26-60 (679)
232 PF07992 Pyr_redox_2: Pyridine 97.1 0.00035 7.6E-09 65.4 3.1 31 48-78 1-32 (201)
233 PRK07846 mycothione reductase; 97.1 0.00051 1.1E-08 73.0 4.3 33 46-79 1-33 (451)
234 PRK07538 hypothetical protein; 97.1 0.00038 8.3E-09 73.2 3.4 32 48-79 2-34 (413)
235 COG3349 Uncharacterized conser 97.0 0.00045 9.8E-09 71.7 3.6 35 48-82 2-37 (485)
236 TIGR02352 thiamin_ThiO glycine 97.0 0.0018 4E-08 65.9 7.5 53 217-285 143-195 (337)
237 PRK05335 tRNA (uracil-5-)-meth 97.0 0.00054 1.2E-08 70.6 3.5 34 47-80 3-37 (436)
238 COG3075 GlpB Anaerobic glycero 97.0 0.00059 1.3E-08 66.2 3.3 35 46-80 2-37 (421)
239 TIGR00562 proto_IX_ox protopor 97.0 0.00064 1.4E-08 72.7 4.0 37 46-82 2-43 (462)
240 TIGR03197 MnmC_Cterm tRNA U-34 96.9 0.0038 8.2E-08 65.0 9.0 53 217-286 141-193 (381)
241 PLN02927 antheraxanthin epoxid 96.9 0.00081 1.8E-08 73.7 3.8 35 44-78 79-114 (668)
242 TIGR03315 Se_ygfK putative sel 96.9 0.0011 2.3E-08 75.9 4.8 37 45-81 536-573 (1012)
243 PLN02529 lysine-specific histo 96.9 0.0011 2.3E-08 73.7 4.7 39 44-82 158-197 (738)
244 PRK12831 putative oxidoreducta 96.8 0.0012 2.7E-08 70.3 5.0 37 44-80 138-175 (464)
245 PRK12416 protoporphyrinogen ox 96.8 0.00083 1.8E-08 71.9 3.6 35 48-82 3-44 (463)
246 TIGR02731 phytoene_desat phyto 96.8 0.00089 1.9E-08 71.4 3.8 35 48-82 1-36 (453)
247 PF00996 GDI: GDP dissociation 96.7 0.00098 2.1E-08 69.3 3.0 42 43-84 1-43 (438)
248 KOG2614 Kynurenine 3-monooxyge 96.7 0.0013 2.7E-08 66.3 3.6 33 46-78 2-35 (420)
249 KOG4716 Thioredoxin reductase 96.7 0.0015 3.2E-08 63.6 3.8 35 44-78 17-52 (503)
250 PRK06912 acoL dihydrolipoamide 96.7 0.0014 3E-08 69.9 4.2 33 48-80 2-35 (458)
251 KOG1335 Dihydrolipoamide dehyd 96.7 0.0019 4.2E-08 64.0 4.3 36 45-80 38-74 (506)
252 PF00070 Pyr_redox: Pyridine n 96.6 0.0019 4.1E-08 50.6 3.5 32 49-80 2-34 (80)
253 PRK06475 salicylate hydroxylas 96.6 0.0014 3E-08 68.7 3.5 32 48-79 4-36 (400)
254 TIGR01316 gltA glutamate synth 96.6 0.0019 4.1E-08 68.6 4.6 37 44-80 131-168 (449)
255 PRK12810 gltD glutamate syntha 96.6 0.0022 4.7E-08 68.6 4.8 37 44-80 141-178 (471)
256 TIGR00137 gid_trmFO tRNA:m(5)U 96.6 0.0015 3.3E-08 67.7 3.4 33 47-79 1-34 (433)
257 KOG3855 Monooxygenase involved 96.6 0.002 4.4E-08 64.6 4.0 36 44-79 34-74 (481)
258 PLN02328 lysine-specific histo 96.6 0.002 4.4E-08 71.9 4.4 39 44-82 236-275 (808)
259 PF13454 NAD_binding_9: FAD-NA 96.5 0.056 1.2E-06 48.3 12.7 30 50-79 1-36 (156)
260 COG1232 HemY Protoporphyrinoge 96.5 0.002 4.2E-08 67.2 3.6 34 49-82 3-39 (444)
261 COG1148 HdrA Heterodisulfide r 96.5 0.0019 4.1E-08 66.0 3.0 37 46-82 124-161 (622)
262 PLN02612 phytoene desaturase 96.4 0.0029 6.2E-08 69.2 4.5 37 45-81 92-129 (567)
263 TIGR02732 zeta_caro_desat caro 96.4 0.0024 5.3E-08 68.2 3.8 97 217-324 225-321 (474)
264 KOG0405 Pyridine nucleotide-di 96.4 0.0037 8.1E-08 61.2 4.4 35 44-78 18-53 (478)
265 PLN02487 zeta-carotene desatur 96.4 0.0041 8.9E-08 67.5 5.3 36 46-81 75-111 (569)
266 PRK11749 dihydropyrimidine deh 96.4 0.0036 7.9E-08 66.7 4.7 37 44-80 138-175 (457)
267 TIGR03219 salicylate_mono sali 96.3 0.0028 6.1E-08 66.7 3.7 32 48-79 2-35 (414)
268 PRK12779 putative bifunctional 96.3 0.0035 7.6E-08 72.2 4.4 37 45-81 305-342 (944)
269 PRK12778 putative bifunctional 96.3 0.004 8.8E-08 70.6 4.8 36 44-79 429-465 (752)
270 PRK12769 putative oxidoreducta 96.3 0.0036 7.8E-08 69.9 4.2 36 45-80 326-362 (654)
271 PRK12775 putative trifunctiona 96.3 0.0033 7.2E-08 73.0 4.0 37 45-81 429-466 (1006)
272 KOG0685 Flavin-containing amin 96.2 0.0045 9.7E-08 63.4 4.2 39 44-82 19-59 (498)
273 PRK09853 putative selenate red 96.2 0.0043 9.3E-08 70.8 4.4 38 44-81 537-575 (1019)
274 COG1252 Ndh NADH dehydrogenase 96.2 0.039 8.5E-07 56.8 10.7 35 48-82 5-42 (405)
275 PRK12814 putative NADPH-depend 96.1 0.0061 1.3E-07 67.8 4.7 37 44-80 191-228 (652)
276 TIGR01350 lipoamide_DH dihydro 96.0 0.044 9.6E-07 58.6 11.0 32 47-78 171-203 (461)
277 PRK04965 NADH:flavorubredoxin 96.0 0.064 1.4E-06 55.7 11.7 33 47-79 142-175 (377)
278 PLN02852 ferredoxin-NADP+ redu 96.0 0.008 1.7E-07 63.9 4.9 37 45-81 25-64 (491)
279 PLN03000 amine oxidase 95.9 0.0065 1.4E-07 68.2 4.1 38 45-82 183-221 (881)
280 PRK07818 dihydrolipoamide dehy 95.9 0.064 1.4E-06 57.4 11.5 54 222-286 224-277 (466)
281 PRK15317 alkyl hydroperoxide r 95.9 0.089 1.9E-06 57.1 12.7 56 224-289 400-456 (517)
282 TIGR03140 AhpF alkyl hydropero 95.8 0.1 2.2E-06 56.6 12.5 55 224-288 401-456 (515)
283 PRK12770 putative glutamate sy 95.8 0.01 2.2E-07 60.9 4.7 36 45-80 17-53 (352)
284 TIGR01318 gltD_gamma_fam gluta 95.7 0.01 2.2E-07 63.4 4.4 36 45-80 140-176 (467)
285 PRK06567 putative bifunctional 95.7 0.0095 2.1E-07 67.4 4.1 35 44-78 381-416 (1028)
286 PLN02976 amine oxidase 95.7 0.0097 2.1E-07 69.4 4.2 38 45-82 692-730 (1713)
287 PRK05976 dihydrolipoamide dehy 95.7 0.1 2.2E-06 55.9 11.9 33 47-79 181-214 (472)
288 TIGR02374 nitri_red_nirB nitri 95.7 0.046 9.9E-07 62.3 9.6 32 49-80 1-36 (785)
289 PRK08255 salicylyl-CoA 5-hydro 95.5 0.0096 2.1E-07 67.6 3.4 32 48-79 2-36 (765)
290 PRK09754 phenylpropionate diox 95.5 0.11 2.4E-06 54.3 11.1 32 48-79 146-178 (396)
291 TIGR01317 GOGAT_sm_gam glutama 95.5 0.013 2.7E-07 63.0 4.1 35 45-79 142-177 (485)
292 PTZ00188 adrenodoxin reductase 95.5 0.019 4.1E-07 60.5 5.1 38 45-82 38-77 (506)
293 PRK06327 dihydrolipoamide dehy 95.4 0.12 2.5E-06 55.5 11.3 31 48-78 185-216 (475)
294 PRK12809 putative oxidoreducta 95.4 0.014 3E-07 64.9 4.3 37 45-81 309-346 (639)
295 COG1249 Lpd Pyruvate/2-oxoglut 95.4 0.1 2.3E-06 54.9 10.3 33 48-80 175-208 (454)
296 PRK06912 acoL dihydrolipoamide 95.4 0.14 3.1E-06 54.6 11.5 31 48-78 172-203 (458)
297 PRK10262 thioredoxin reductase 95.2 0.29 6.2E-06 49.5 12.6 56 222-287 196-253 (321)
298 KOG1276 Protoporphyrinogen oxi 95.0 0.024 5.2E-07 57.4 4.0 39 44-82 9-50 (491)
299 COG4529 Uncharacterized protei 94.9 0.2 4.4E-06 52.0 10.5 33 47-79 2-38 (474)
300 PRK06416 dihydrolipoamide dehy 94.9 0.15 3.3E-06 54.5 10.2 32 48-79 174-206 (462)
301 KOG1439 RAB proteins geranylge 94.9 0.017 3.8E-07 57.8 2.7 41 43-83 1-42 (440)
302 COG3634 AhpF Alkyl hydroperoxi 94.9 0.013 2.9E-07 57.4 1.9 60 221-290 400-460 (520)
303 PRK05249 soluble pyridine nucl 94.9 0.17 3.7E-06 54.1 10.6 31 48-78 177-208 (461)
304 PRK12771 putative glutamate sy 94.9 0.029 6.3E-07 61.6 4.8 37 44-80 135-172 (564)
305 PRK13984 putative oxidoreducta 94.9 0.028 6.1E-07 62.2 4.7 37 44-80 281-318 (604)
306 TIGR01292 TRX_reduct thioredox 94.9 0.35 7.6E-06 48.0 12.3 32 47-78 142-174 (300)
307 PRK06115 dihydrolipoamide dehy 94.9 0.23 5E-06 53.1 11.4 31 48-78 176-207 (466)
308 PRK06370 mercuric reductase; V 94.9 0.22 4.8E-06 53.2 11.2 33 47-79 172-205 (463)
309 PRK06467 dihydrolipoamide dehy 94.8 0.2 4.2E-06 53.7 10.7 32 48-79 176-208 (471)
310 PRK12831 putative oxidoreducta 94.8 0.15 3.4E-06 54.3 9.9 32 47-78 282-314 (464)
311 PRK14989 nitrite reductase sub 94.8 0.16 3.5E-06 58.2 10.3 57 222-291 198-254 (847)
312 PRK06116 glutathione reductase 94.8 0.23 4.9E-06 52.9 11.0 31 48-78 169-200 (450)
313 TIGR01316 gltA glutamate synth 94.7 0.2 4.4E-06 53.2 10.2 31 48-78 274-305 (449)
314 PRK09754 phenylpropionate diox 94.6 0.03 6.4E-07 58.6 3.9 35 46-80 3-40 (396)
315 PRK09564 coenzyme A disulfide 94.6 0.15 3.3E-06 54.1 9.3 32 47-78 150-182 (444)
316 PLN02507 glutathione reductase 94.6 0.25 5.4E-06 53.3 11.0 31 48-78 205-236 (499)
317 TIGR01424 gluta_reduc_2 glutat 94.5 0.23 5.1E-06 52.7 10.5 31 48-78 168-199 (446)
318 PRK09564 coenzyme A disulfide 94.5 0.031 6.7E-07 59.4 3.6 33 48-80 2-37 (444)
319 KOG4405 GDP dissociation inhib 94.3 0.049 1.1E-06 54.7 4.1 42 44-85 6-48 (547)
320 PTZ00318 NADH dehydrogenase-li 94.2 0.047 1E-06 57.6 4.1 37 44-80 8-45 (424)
321 PRK14727 putative mercuric red 94.2 0.25 5.4E-06 53.0 9.7 30 48-77 190-220 (479)
322 PRK07845 flavoprotein disulfid 94.1 0.38 8.2E-06 51.5 11.0 32 48-79 179-211 (466)
323 TIGR02374 nitri_red_nirB nitri 93.9 0.36 7.8E-06 55.1 10.7 31 48-78 142-173 (785)
324 KOG2403 Succinate dehydrogenas 93.9 0.12 2.5E-06 54.2 6.0 33 46-78 55-88 (642)
325 PRK08010 pyridine nucleotide-d 93.7 0.36 7.9E-06 51.2 9.9 31 48-78 160-191 (441)
326 COG5044 MRS6 RAB proteins gera 93.7 0.083 1.8E-06 52.5 4.4 39 45-83 5-44 (434)
327 COG0493 GltD NADPH-dependent g 92.9 0.078 1.7E-06 55.9 3.2 35 46-80 123-158 (457)
328 TIGR01423 trypano_reduc trypan 92.8 0.8 1.7E-05 49.2 10.7 32 48-79 189-224 (486)
329 TIGR03169 Nterm_to_SelD pyridi 92.7 0.11 2.3E-06 53.7 3.9 33 48-80 1-37 (364)
330 PRK04965 NADH:flavorubredoxin 92.7 0.11 2.3E-06 54.0 3.8 59 218-291 190-248 (377)
331 KOG1800 Ferredoxin/adrenodoxin 92.6 0.13 2.9E-06 51.3 4.0 36 46-81 20-58 (468)
332 KOG3851 Sulfide:quinone oxidor 92.5 0.12 2.7E-06 50.3 3.6 38 44-81 37-77 (446)
333 PRK11749 dihydropyrimidine deh 92.4 0.64 1.4E-05 49.6 9.4 32 47-78 274-307 (457)
334 KOG2755 Oxidoreductase [Genera 92.4 0.057 1.2E-06 51.1 1.1 37 49-85 2-41 (334)
335 COG1206 Gid NAD(FAD)-utilizing 92.2 0.12 2.5E-06 50.8 3.0 33 48-80 5-38 (439)
336 COG4716 Myosin-crossreactive a 91.7 0.65 1.4E-05 46.5 7.5 57 220-282 236-292 (587)
337 KOG0399 Glutamate synthase [Am 91.6 0.17 3.7E-06 57.1 3.9 39 44-82 1783-1822(2142)
338 PRK12778 putative bifunctional 90.8 0.94 2E-05 51.6 9.1 31 48-78 572-604 (752)
339 PF02558 ApbA: Ketopantoate re 90.6 0.2 4.4E-06 44.3 2.8 30 49-78 1-31 (151)
340 COG0446 HcaD Uncharacterized N 90.5 0.22 4.8E-06 52.0 3.4 36 46-81 136-172 (415)
341 COG0569 TrkA K+ transport syst 90.4 0.24 5.2E-06 47.2 3.2 32 48-79 2-34 (225)
342 KOG0404 Thioredoxin reductase 90.1 0.24 5.2E-06 45.9 2.8 32 47-78 9-41 (322)
343 PRK05329 anaerobic glycerol-3- 89.7 0.81 1.8E-05 48.0 6.8 58 217-286 265-322 (422)
344 PF13434 K_oxygenase: L-lysine 89.0 1.4 3.1E-05 44.8 7.8 36 44-79 188-226 (341)
345 PF13738 Pyr_redox_3: Pyridine 88.6 0.44 9.5E-06 44.4 3.6 34 46-79 167-201 (203)
346 TIGR02733 desat_CrtD C-3',4' d 88.6 0.88 1.9E-05 49.0 6.3 70 207-286 228-298 (492)
347 PRK07251 pyridine nucleotide-d 88.3 0.41 9E-06 50.7 3.5 33 48-80 159-192 (438)
348 PRK07846 mycothione reductase; 88.2 0.45 9.7E-06 50.7 3.7 34 47-80 167-201 (451)
349 TIGR01421 gluta_reduc_1 glutat 87.8 0.45 9.8E-06 50.6 3.5 33 48-80 168-201 (450)
350 PRK05708 2-dehydropantoate 2-r 87.7 0.47 1E-05 47.6 3.3 31 48-78 4-35 (305)
351 TIGR02053 MerA mercuric reduct 87.6 0.49 1.1E-05 50.6 3.5 34 47-80 167-201 (463)
352 COG3486 IucD Lysine/ornithine 87.5 0.9 1.9E-05 46.2 5.0 38 43-80 2-41 (436)
353 PRK06249 2-dehydropantoate 2-r 86.7 0.73 1.6E-05 46.4 4.1 32 47-78 6-38 (313)
354 COG1252 Ndh NADH dehydrogenase 86.7 0.43 9.3E-06 49.3 2.3 35 46-80 155-203 (405)
355 PF01210 NAD_Gly3P_dh_N: NAD-d 86.5 0.48 1E-05 42.3 2.4 30 49-78 2-32 (157)
356 PF02737 3HCDH_N: 3-hydroxyacy 86.0 0.62 1.3E-05 42.7 2.8 30 49-78 2-32 (180)
357 PRK13512 coenzyme A disulfide 86.0 0.64 1.4E-05 49.3 3.4 32 48-79 150-182 (438)
358 TIGR03385 CoA_CoA_reduc CoA-di 85.5 0.74 1.6E-05 48.6 3.5 33 47-79 138-171 (427)
359 KOG2018 Predicted dinucleotide 85.4 0.38 8.2E-06 46.7 1.1 31 48-78 76-108 (430)
360 TIGR03452 mycothione_red mycot 85.2 0.8 1.7E-05 48.8 3.6 33 47-79 170-203 (452)
361 PRK06292 dihydrolipoamide dehy 85.1 0.79 1.7E-05 48.9 3.6 34 47-80 170-204 (460)
362 TIGR02731 phytoene_desat phyto 84.9 1.6 3.4E-05 46.5 5.8 55 217-280 219-274 (453)
363 PF02254 TrkA_N: TrkA-N domain 84.6 0.9 1.9E-05 38.0 3.0 30 49-78 1-31 (116)
364 PTZ00153 lipoamide dehydrogena 84.5 0.9 1.9E-05 50.5 3.7 33 48-80 314-347 (659)
365 PTZ00058 glutathione reductase 83.9 0.94 2E-05 49.5 3.5 33 47-79 238-271 (561)
366 TIGR03143 AhpF_homolog putativ 83.4 1 2.3E-05 49.2 3.7 33 47-79 144-177 (555)
367 PRK14989 nitrite reductase sub 83.3 1.1 2.4E-05 51.5 3.9 34 48-81 5-43 (847)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 83.3 1.1 2.4E-05 41.2 3.2 30 49-78 3-33 (185)
369 PRK01438 murD UDP-N-acetylmura 83.0 1.1 2.3E-05 48.2 3.5 31 48-78 18-49 (480)
370 PRK06129 3-hydroxyacyl-CoA deh 82.5 1 2.3E-05 45.2 3.0 31 48-78 4-35 (308)
371 PLN02546 glutathione reductase 82.5 1.1 2.5E-05 48.8 3.5 32 48-79 254-286 (558)
372 PRK12921 2-dehydropantoate 2-r 82.3 1.1 2.4E-05 44.8 3.1 28 49-76 3-31 (305)
373 PRK13748 putative mercuric red 82.3 1.1 2.5E-05 49.0 3.5 31 48-78 272-303 (561)
374 PRK06522 2-dehydropantoate 2-r 82.2 1.2 2.6E-05 44.5 3.3 29 49-77 3-32 (304)
375 PF13241 NAD_binding_7: Putati 81.9 1.1 2.4E-05 36.7 2.5 33 45-77 6-39 (103)
376 PRK06567 putative bifunctional 81.7 3.9 8.4E-05 47.1 7.3 32 220-255 649-680 (1028)
377 KOG3923 D-aspartate oxidase [A 81.4 1.4 3E-05 42.9 3.1 33 45-77 2-42 (342)
378 PF01593 Amino_oxidase: Flavin 81.3 0.94 2E-05 47.3 2.3 28 56-83 1-29 (450)
379 PRK06719 precorrin-2 dehydroge 81.2 1.5 3.3E-05 39.1 3.2 30 46-75 13-43 (157)
380 TIGR02732 zeta_caro_desat caro 81.2 2.8 6.1E-05 44.9 5.9 35 48-82 1-36 (474)
381 PRK14694 putative mercuric red 80.9 1.4 3.1E-05 47.1 3.5 31 48-78 180-211 (468)
382 PRK06718 precorrin-2 dehydroge 80.8 1.5 3.2E-05 41.0 3.1 31 46-76 10-41 (202)
383 PRK02705 murD UDP-N-acetylmura 79.8 1.5 3.3E-05 46.8 3.2 31 49-79 3-34 (459)
384 PLN02487 zeta-carotene desatur 79.7 3.4 7.4E-05 45.1 5.9 64 218-287 302-365 (569)
385 PRK14106 murD UDP-N-acetylmura 79.4 1.6 3.4E-05 46.5 3.2 33 46-78 5-38 (450)
386 PRK04148 hypothetical protein; 79.0 1.9 4.1E-05 37.2 2.9 32 47-79 18-50 (134)
387 PRK12770 putative glutamate sy 78.8 1.7 3.8E-05 44.5 3.2 31 48-78 174-206 (352)
388 PF00899 ThiF: ThiF family; I 78.6 2 4.4E-05 37.1 3.1 33 47-79 3-37 (135)
389 PRK08293 3-hydroxybutyryl-CoA 78.6 1.9 4.1E-05 42.8 3.3 31 48-78 5-36 (287)
390 PRK09260 3-hydroxybutyryl-CoA 78.2 1.8 4E-05 42.9 3.1 30 49-78 4-34 (288)
391 TIGR01438 TGR thioredoxin and 78.2 1.7 3.8E-05 46.6 3.1 30 48-77 182-212 (484)
392 PTZ00052 thioredoxin reductase 78.1 1.8 3.9E-05 46.7 3.2 30 48-77 184-214 (499)
393 PRK07066 3-hydroxybutyryl-CoA 78.0 2.1 4.5E-05 43.1 3.4 30 49-78 10-40 (321)
394 PLN02172 flavin-containing mon 77.8 2.2 4.8E-05 45.5 3.7 32 47-78 205-237 (461)
395 PF01488 Shikimate_DH: Shikima 77.5 2.1 4.5E-05 37.1 2.8 33 45-77 11-45 (135)
396 TIGR01470 cysG_Nterm siroheme 77.1 2.2 4.8E-05 39.9 3.1 29 48-76 11-40 (205)
397 COG0686 Ald Alanine dehydrogen 77.1 2.5 5.5E-05 41.4 3.5 36 44-79 166-202 (371)
398 PRK15116 sulfur acceptor prote 77.0 2.5 5.3E-05 41.3 3.5 35 45-79 29-65 (268)
399 PRK08229 2-dehydropantoate 2-r 76.8 2.2 4.7E-05 43.5 3.3 30 48-77 4-34 (341)
400 cd01080 NAD_bind_m-THF_DH_Cycl 76.7 3.1 6.8E-05 37.5 3.8 33 45-77 43-77 (168)
401 COG2072 TrkA Predicted flavopr 76.1 3 6.5E-05 44.2 4.1 34 47-80 176-210 (443)
402 PRK07819 3-hydroxybutyryl-CoA 75.8 3.1 6.8E-05 41.2 3.9 31 48-78 7-38 (286)
403 cd01075 NAD_bind_Leu_Phe_Val_D 75.8 2.5 5.5E-05 39.4 3.1 30 48-77 30-60 (200)
404 COG1748 LYS9 Saccharopine dehy 75.6 2.7 5.9E-05 43.2 3.5 31 48-78 3-35 (389)
405 PRK14620 NAD(P)H-dependent gly 75.4 2.5 5.5E-05 42.8 3.2 29 49-77 3-32 (326)
406 TIGR00518 alaDH alanine dehydr 75.1 2.6 5.6E-05 43.5 3.2 33 45-77 166-199 (370)
407 TIGR02354 thiF_fam2 thiamine b 75.0 2.7 5.9E-05 39.1 3.1 34 45-78 20-55 (200)
408 KOG2495 NADH-dehydrogenase (ub 74.6 1.7 3.7E-05 44.5 1.7 35 46-80 218-267 (491)
409 PTZ00318 NADH dehydrogenase-li 74.5 2.8 6E-05 44.2 3.4 33 48-80 175-222 (424)
410 PRK07530 3-hydroxybutyryl-CoA 74.4 3.3 7.1E-05 41.2 3.7 31 48-78 6-37 (292)
411 PRK06035 3-hydroxyacyl-CoA deh 74.2 2.9 6.2E-05 41.6 3.2 30 49-78 6-36 (291)
412 PRK12475 thiamine/molybdopteri 73.9 2.8 6.1E-05 42.6 3.1 35 45-79 23-59 (338)
413 COG1893 ApbA Ketopantoate redu 73.7 2.8 6E-05 42.0 3.0 31 49-79 3-34 (307)
414 cd01483 E1_enzyme_family Super 72.8 4.1 8.8E-05 35.6 3.5 32 49-80 2-35 (143)
415 PF01262 AlaDh_PNT_C: Alanine 72.5 3.4 7.3E-05 37.3 3.0 34 45-78 19-53 (168)
416 PRK14618 NAD(P)H-dependent gly 72.3 4 8.6E-05 41.4 3.8 31 48-78 6-37 (328)
417 PRK07688 thiamine/molybdopteri 72.3 3.8 8.2E-05 41.7 3.6 35 45-79 23-59 (339)
418 PF13478 XdhC_C: XdhC Rossmann 71.6 4 8.6E-05 35.4 3.1 31 49-79 1-32 (136)
419 COG1004 Ugd Predicted UDP-gluc 71.3 3.8 8.3E-05 41.8 3.3 31 48-78 2-33 (414)
420 PRK05808 3-hydroxybutyryl-CoA 71.0 3.5 7.6E-05 40.7 3.0 31 48-78 5-36 (282)
421 PRK06130 3-hydroxybutyryl-CoA 70.8 4.5 9.7E-05 40.6 3.7 31 48-78 6-37 (311)
422 cd01486 Apg7 Apg7 is an E1-lik 70.7 4.4 9.5E-05 40.1 3.5 33 49-81 2-36 (307)
423 TIGR02355 moeB molybdopterin s 70.6 5.4 0.00012 38.4 4.1 36 45-80 23-60 (240)
424 TIGR01381 E1_like_apg7 E1-like 70.6 3.9 8.4E-05 44.7 3.3 38 46-83 338-377 (664)
425 cd00401 AdoHcyase S-adenosyl-L 70.5 4 8.6E-05 42.6 3.3 33 46-78 202-235 (413)
426 PRK07233 hypothetical protein; 70.1 6.6 0.00014 41.3 5.1 66 206-286 193-258 (434)
427 TIGR01763 MalateDH_bact malate 70.0 4.2 9.2E-05 40.7 3.3 29 48-76 3-33 (305)
428 KOG1346 Programmed cell death 69.8 36 0.00079 35.0 9.6 136 36-280 168-309 (659)
429 cd01487 E1_ThiF_like E1_ThiF_l 69.6 4.5 9.8E-05 36.7 3.2 31 49-79 2-34 (174)
430 cd05311 NAD_bind_2_malic_enz N 69.4 3.9 8.4E-05 39.0 2.8 33 47-79 26-62 (226)
431 PLN02612 phytoene desaturase 69.0 7.5 0.00016 42.7 5.3 48 220-280 317-364 (567)
432 TIGR02853 spore_dpaA dipicolin 68.7 4.4 9.6E-05 40.1 3.1 33 46-78 151-184 (287)
433 PRK00094 gpsA NAD(P)H-dependen 68.5 4.8 0.0001 40.6 3.4 31 48-78 3-34 (325)
434 PRK12549 shikimate 5-dehydroge 67.7 4.8 0.0001 39.9 3.1 32 47-78 128-161 (284)
435 cd05292 LDH_2 A subgroup of L- 67.5 5.2 0.00011 40.1 3.4 31 48-78 2-35 (308)
436 TIGR03026 NDP-sugDHase nucleot 67.3 5.4 0.00012 41.8 3.6 30 49-78 3-33 (411)
437 PRK05690 molybdopterin biosynt 67.0 5.4 0.00012 38.5 3.3 35 45-79 31-67 (245)
438 TIGR03736 PRTRC_ThiF PRTRC sys 66.9 5.9 0.00013 38.1 3.4 35 44-78 9-55 (244)
439 PRK08328 hypothetical protein; 66.8 5.2 0.00011 38.2 3.1 33 46-78 27-61 (231)
440 cd00757 ThiF_MoeB_HesA_family 66.6 5.2 0.00011 38.1 3.1 34 45-78 20-55 (228)
441 PRK09496 trkA potassium transp 66.4 5.1 0.00011 42.6 3.3 31 48-78 2-33 (453)
442 PRK12548 shikimate 5-dehydroge 66.1 5.2 0.00011 39.7 3.0 32 47-78 127-160 (289)
443 TIGR02356 adenyl_thiF thiazole 65.8 6.4 0.00014 36.7 3.4 35 45-79 20-56 (202)
444 PLN02545 3-hydroxybutyryl-CoA 65.7 6.8 0.00015 39.0 3.8 30 49-78 7-37 (295)
445 PRK11064 wecC UDP-N-acetyl-D-m 65.6 5.8 0.00013 41.7 3.4 31 48-78 5-36 (415)
446 PRK08644 thiamine biosynthesis 65.2 6.6 0.00014 37.0 3.4 35 45-79 27-63 (212)
447 cd01484 E1-2_like Ubiquitin ac 65.2 6 0.00013 37.8 3.1 31 49-79 2-34 (234)
448 PRK10669 putative cation:proto 65.2 5.4 0.00012 43.7 3.3 33 46-78 417-450 (558)
449 PRK14619 NAD(P)H-dependent gly 65.1 6.5 0.00014 39.4 3.6 30 48-77 6-36 (308)
450 TIGR01915 npdG NADPH-dependent 65.1 6.3 0.00014 37.3 3.3 30 49-78 3-34 (219)
451 cd05291 HicDH_like L-2-hydroxy 64.9 6.3 0.00014 39.5 3.4 30 49-78 3-35 (306)
452 PRK02472 murD UDP-N-acetylmura 64.7 5.4 0.00012 42.3 3.1 31 48-78 7-38 (447)
453 TIGR00936 ahcY adenosylhomocys 64.4 6.6 0.00014 40.8 3.5 33 46-78 195-228 (406)
454 TIGR02279 PaaC-3OHAcCoADH 3-hy 64.1 6 0.00013 42.6 3.2 31 48-78 7-38 (503)
455 cd01485 E1-1_like Ubiquitin ac 64.0 6.9 0.00015 36.4 3.3 33 46-78 19-53 (198)
456 cd05191 NAD_bind_amino_acid_DH 64.0 7.7 0.00017 30.4 3.1 30 47-76 24-55 (86)
457 COG3075 GlpB Anaerobic glycero 63.6 8.5 0.00018 38.3 3.8 53 220-284 267-319 (421)
458 PRK08017 oxidoreductase; Provi 62.8 7.5 0.00016 37.4 3.5 30 49-78 5-36 (256)
459 COG1250 FadB 3-hydroxyacyl-CoA 62.7 7.5 0.00016 38.7 3.3 30 49-78 6-36 (307)
460 PRK11730 fadB multifunctional 62.3 6.9 0.00015 44.3 3.4 31 48-78 315-346 (715)
461 cd01492 Aos1_SUMO Ubiquitin ac 62.0 7.9 0.00017 36.0 3.3 34 45-78 20-55 (197)
462 PTZ00082 L-lactate dehydrogena 61.7 9.7 0.00021 38.4 4.1 34 46-79 6-41 (321)
463 TIGR02437 FadB fatty oxidation 61.5 7.2 0.00016 44.0 3.4 31 48-78 315-346 (714)
464 PRK08223 hypothetical protein; 61.5 7.7 0.00017 38.2 3.2 35 45-79 26-62 (287)
465 PRK05476 S-adenosyl-L-homocyst 61.2 7.8 0.00017 40.6 3.3 33 46-78 212-245 (425)
466 PRK07417 arogenate dehydrogena 61.1 7.1 0.00015 38.5 2.9 29 49-77 3-32 (279)
467 PLN02520 bifunctional 3-dehydr 61.0 7.1 0.00015 42.4 3.2 31 47-77 380-411 (529)
468 PF00056 Ldh_1_N: lactate/mala 61.0 8.5 0.00018 33.6 3.1 31 48-78 2-36 (141)
469 PRK06153 hypothetical protein; 60.5 8.7 0.00019 39.4 3.4 34 46-79 176-211 (393)
470 PLN02494 adenosylhomocysteinas 60.2 8.7 0.00019 40.6 3.5 33 46-78 254-287 (477)
471 cd01078 NAD_bind_H4MPT_DH NADP 60.1 9 0.0002 35.4 3.3 31 47-77 29-61 (194)
472 PRK08306 dipicolinate synthase 60.0 8.5 0.00018 38.4 3.3 33 46-78 152-185 (296)
473 PRK07531 bifunctional 3-hydrox 59.7 8.3 0.00018 41.6 3.4 31 48-78 6-37 (495)
474 cd01488 Uba3_RUB Ubiquitin act 59.7 8.3 0.00018 38.2 3.1 31 49-79 2-34 (291)
475 PRK08268 3-hydroxy-acyl-CoA de 59.5 8.3 0.00018 41.6 3.3 31 48-78 9-40 (507)
476 TIGR00507 aroE shikimate 5-deh 59.4 8.9 0.00019 37.6 3.3 31 47-77 118-149 (270)
477 cd01489 Uba2_SUMO Ubiquitin ac 59.3 7.9 0.00017 38.7 2.9 31 49-79 2-34 (312)
478 PRK06223 malate dehydrogenase; 59.2 9.2 0.0002 38.3 3.4 30 48-77 4-35 (307)
479 cd01339 LDH-like_MDH L-lactate 59.0 7.8 0.00017 38.7 2.9 30 49-78 1-32 (300)
480 PLN02353 probable UDP-glucose 58.8 9.2 0.0002 40.8 3.5 31 48-78 3-36 (473)
481 PRK09496 trkA potassium transp 58.8 8.6 0.00019 40.8 3.3 32 47-78 232-264 (453)
482 PRK05562 precorrin-2 dehydroge 58.7 9.6 0.00021 36.1 3.2 31 45-75 24-55 (223)
483 PF03807 F420_oxidored: NADP o 58.5 10 0.00022 30.3 2.9 30 49-78 2-36 (96)
484 cd00755 YgdL_like Family of ac 58.3 9.1 0.0002 36.5 3.0 34 46-79 11-46 (231)
485 PRK07326 short chain dehydroge 58.2 10 0.00022 35.9 3.4 30 48-77 8-39 (237)
486 cd01490 Ube1_repeat2 Ubiquitin 58.2 8.6 0.00019 40.3 3.0 31 49-79 2-39 (435)
487 PRK00066 ldh L-lactate dehydro 58.0 13 0.00028 37.4 4.2 33 46-78 6-41 (315)
488 KOG2304 3-hydroxyacyl-CoA dehy 57.4 11 0.00025 35.2 3.3 36 44-79 9-45 (298)
489 PF00743 FMO-like: Flavin-bind 57.3 9.2 0.0002 41.5 3.2 33 47-79 184-217 (531)
490 COG2085 Predicted dinucleotide 57.0 10 0.00022 35.3 2.9 29 49-77 4-33 (211)
491 PTZ00075 Adenosylhomocysteinas 57.0 10 0.00023 40.0 3.4 34 46-79 254-288 (476)
492 PRK12779 putative bifunctional 57.0 9.8 0.00021 44.4 3.5 32 47-78 448-480 (944)
493 COG1179 Dinucleotide-utilizing 56.7 13 0.00027 35.4 3.5 36 46-81 30-67 (263)
494 PRK09424 pntA NAD(P) transhydr 56.7 9.7 0.00021 40.9 3.2 34 45-78 164-198 (509)
495 TIGR02441 fa_ox_alpha_mit fatt 56.6 9.1 0.0002 43.4 3.2 31 48-78 337-368 (737)
496 PRK08762 molybdopterin biosynt 56.6 10 0.00022 39.2 3.3 35 45-79 134-170 (376)
497 PRK12810 gltD glutamate syntha 56.4 24 0.00053 37.7 6.3 62 220-291 338-410 (471)
498 PRK00258 aroE shikimate 5-dehy 56.3 10 0.00022 37.4 3.1 32 47-78 124-157 (278)
499 PRK06057 short chain dehydroge 56.2 11 0.00024 36.3 3.4 31 48-78 9-41 (255)
500 PRK15057 UDP-glucose 6-dehydro 56.2 11 0.00023 39.2 3.4 31 49-79 3-33 (388)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=8e-84 Score=691.34 Aligned_cols=538 Identities=61% Similarity=1.035 Sum_probs=401.3
Q ss_pred CCCCccccccccCCC----------CCCccEEEECCCcchHHHHHhhcCCCeEEEEecCCCCCCCCCcccchhhhhccCC
Q 008281 29 APNYSFMHNATAAQP----------VSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSD 98 (571)
Q Consensus 29 ~~~~~~~~~~~~~~~----------~~~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~ 98 (571)
...++|+.++...+. ..+|||||||+|++||++|.+|+++.+|||||+|+.....+.+..+..+.....+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d 107 (587)
T PLN02785 28 PYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLAD 107 (587)
T ss_pred ccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcccc
Confidence 355688888877666 5589999999999999999999998899999999864333444433334334457
Q ss_pred CCCCCCCCcccCCCcccccCcceecccccccCceecCCChhhhccCCCChhhhhhhhhhhhcccccCCCCchhHHHHHHH
Q 008281 99 LSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDG 178 (571)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~n~~~~~r~~~~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 178 (571)
|.+.+.+|.+..++++.+++||+|||+|++|+|+|.|+++++++..||+|+.+.++|++.|+.+...|...++...+.++
T Consensus 108 ~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a 187 (587)
T PLN02785 108 TSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDS 187 (587)
T ss_pred cCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHH
Confidence 88888888888888899999999999999999999999998888889999999999999998765556667888999999
Q ss_pred HHHcCCCCCCCCccCCCCceeeeeEEEcCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCC
Q 008281 179 LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT 258 (571)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~ 258 (571)
+.++|+++.+++..++..|...+..+++..|.|+++..+++.+++.|++|++++.|++|++++++ ...+++||++.+.+
T Consensus 188 ~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~ 266 (587)
T PLN02785 188 LLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDEN 266 (587)
T ss_pred HHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECC
Confidence 99999988887777777777777777778899999888777778899999999999999998642 22489999998767
Q ss_pred CceeEEeeecCCCeeEEEecCCcCcHHHHHhhc--------CCCCcccccCcccCCCCCCCCCceEEecCCCcccchhhH
Q 008281 259 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQ 330 (571)
Q Consensus 259 g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg--------~~gi~~~~~~p~VG~nl~dh~~~~v~~~~~~~~~~~~~~ 330 (571)
|+.+++.+..+++++||||||+|+||+|||+|| ++|||++.|+|+||+||+|||...+.+..+.+...+..+
T Consensus 267 g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~ 346 (587)
T PLN02785 267 GNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQ 346 (587)
T ss_pred CceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHh
Confidence 765544322124689999999999999999999 899999999999999999999999888776553322222
Q ss_pred hhcchhhhhHHHhhcCCcccCCCCCCCCCCCccccccccccCCCCCCCHHHHHHHHhhhccCCCCCccceeEEEeecccc
Q 008281 331 VVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPV 410 (571)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 410 (571)
.......+.|.....+...... .+....+.+....+.+...++....++.++.++......+...+....+...++.|.
T Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~ 425 (587)
T PLN02785 347 TVGITKMGVYIEASSGFGQSPD-SIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPI 425 (587)
T ss_pred hhhhhccccceecccccccCch-hhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCCC
Confidence 2221111222221111100000 000001111111111111112222233333332111111111122124456778999
Q ss_pred cceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHhcccccccccccCc-chhhhccccCCCCCCCCCCCCC
Q 008281 411 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMS-VPILVNMTASAPVNLLPRHSNA 489 (571)
Q Consensus 411 s~g~v~l~s~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~ 489 (571)
|||+|+|+|+||.+.|.|++||+.+|.|++.++++++.+++++++.+++.+...+.. .+.+.......|.+..|...++
T Consensus 426 SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 505 (587)
T PLN02785 426 STGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTND 505 (587)
T ss_pred cceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999888776533211 0111111111122233544567
Q ss_pred hHHHHHHHHhccccccccccccccCcccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhcC
Q 008281 490 STSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 568 (571)
Q Consensus 490 ~~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~~rV~G~~NL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~~~ 568 (571)
+++|++|+|+...+.||++|||+||+|||+++||||++||||||+||||.+|++||++|+||||||+|++|+++++.+.
T Consensus 506 d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~~ 584 (587)
T PLN02785 506 TKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGRA 584 (587)
T ss_pred HHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999987653
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=2.5e-84 Score=666.29 Aligned_cols=501 Identities=40% Similarity=0.573 Sum_probs=380.1
Q ss_pred cccccCCCCCCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCCCCCCCCcccchhhhhcc----CCCCCCCCCCcc-
Q 008281 36 HNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRF- 108 (571)
Q Consensus 36 ~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~- 108 (571)
.+........+|||||||||.|||++|.+|+| ..||||||+|+.. +...+++.+...+ .+|.|.+.++..
T Consensus 47 ~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~a 123 (623)
T KOG1238|consen 47 SDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPSQHA 123 (623)
T ss_pred ccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccChhh
Confidence 33333345679999999999999999999999 5999999999876 3344444433333 378988888765
Q ss_pred ---cCCCcccccCcceecccccccCceecCCChhhhc----c--CCCChhhhhhhhhhhhcccccCCCCc----------
Q 008281 109 ---ISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVR----E--VGWDERLVNESYQWVEKVVAFEPPMR---------- 169 (571)
Q Consensus 109 ---~~~~~~~~~~g~~lGG~s~~n~~~~~r~~~~~~~----~--~gw~~~~l~~~~~~~e~~~~~~~~~~---------- 169 (571)
..++...|+|||+|||+|++|+|+|.|++..+|+ . +||+|+++.+||+++|+.....+...
T Consensus 124 c~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ 203 (623)
T KOG1238|consen 124 CLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLL 203 (623)
T ss_pred hhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcce
Confidence 7888899999999999999999999999964433 2 67999999999999998765444322
Q ss_pred --------hhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeEE---EcCCCceecHHH-hhh-hc-CCCCcEEEcCcEEE
Q 008281 170 --------QWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI---FDQNGQRHTAAD-LLE-YA-NPSGLTLLLHASVH 235 (571)
Q Consensus 170 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~---~~~~g~r~~~~~-~l~-~~-~~~g~~i~~~~~V~ 235 (571)
+....+.++..+.|... .|..+..+.|... ..++|.|+++.. |+. .. .|+|+++..++.|+
T Consensus 204 ve~~~~~~~~~~~~~~ag~e~G~~~-----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vt 278 (623)
T KOG1238|consen 204 VEAGVYPNNLFTAFHRAGTEIGGSI-----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVT 278 (623)
T ss_pred eccccccCchhhHhHHhHHhcCCCc-----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEE
Confidence 23455666667777321 1222222333222 237889988866 775 33 47899999999999
Q ss_pred EEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc--------CCCCcccccCcccCCC
Q 008281 236 KVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQG 307 (571)
Q Consensus 236 ~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg--------~~gi~~~~~~p~VG~n 307 (571)
+|.+|..+ .++.||++....|+.++++ +.|+||||||||+||||||+|| ++|||++.++|+||+|
T Consensus 279 rvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~n 351 (623)
T KOG1238|consen 279 RVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQN 351 (623)
T ss_pred EEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccc
Confidence 99999653 4999999985337888887 7899999999999999999999 9999999999999999
Q ss_pred CCCCCCceEEecCCCcccchhhHhhcchhhhhHHHhhcCCcccCCCCCCCCCCCccccccccccCCCC--------CCCH
Q 008281 308 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK--------QRTP 379 (571)
Q Consensus 308 l~dh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 379 (571)
|+||++..+....+.+......+..++.....|+...+|+....+ ....+++..........+|+ ....
T Consensus 352 LqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~---~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~ 428 (623)
T KOG1238|consen 352 LQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG---VETLGFINTVSSNLSLDWPDIELHFVAGSLSS 428 (623)
T ss_pred cccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc---ceeeEEeccccccCcCCCCCeeEEeccccccc
Confidence 999999987776665654444444454555678887777644321 11223332221111111111 0000
Q ss_pred -----------HHHHHHHhhhccCCCCCccceeEEEeecccccceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHH
Q 008281 380 -----------EAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGIST 448 (571)
Q Consensus 380 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~s~d~~~~p~i~~~~~~~~~D~~~~~~~~~~ 448 (571)
++.+..+... . .....+++..+++|.|+|+|.|+|+||.+.|+|++||+.+|+|++.++++++.
T Consensus 429 ~~~~~~~~~~~~~y~~~~~~~---~--~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~ 503 (623)
T KOG1238|consen 429 DGLTALRKALGEIYQALFGEL---T--NSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRT 503 (623)
T ss_pred cchhhhhhhcchHHHHhhhhh---h--cCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHH
Confidence 1111111111 1 11234677888999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccCc--chhhhccccCCCCCCCCCCCCChHHHHHHHHhccccccccccccccC------cccCCC
Q 008281 449 IEKIIESKSFSKFKYESMS--VPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHD 520 (571)
Q Consensus 449 ~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GTc~MG------~VVD~~ 520 (571)
+.++.++..|+++...... .++|..+ ...++++|+||+|....|.||++|||+|| +|||++
T Consensus 504 ~~~l~~s~af~~~~~r~~~~~~~~c~~~-----------~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~ 572 (623)
T KOG1238|consen 504 IIRLSNSKAFQRFGARLWKKPVPGCDLL-----------AFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQ 572 (623)
T ss_pred HHHHHcCHHHHHhcchhccccCCCcccc-----------cCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCc
Confidence 9999999999999887753 2333211 24689999999999999999999999999 899999
Q ss_pred CeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhcCCC
Q 008281 521 YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 570 (571)
Q Consensus 521 ~rV~G~~NL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~~~~~ 570 (571)
+||||++||||+|||+||.+|++||++|+||||||+|+.|++++...+.+
T Consensus 573 lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 573 LRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred ceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999999999888887777654
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.6e-72 Score=610.21 Aligned_cols=487 Identities=26% Similarity=0.353 Sum_probs=342.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCCCC-CCCCcccchhhhhc----cCCCCCCCCCCcccCCCccc
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPY-GNPNITNLGSFGAA----LSDLSSTSPSQRFISEDGVI 115 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 115 (571)
+..+|||||||||++|+++|.+|+| |.+|||||+|+... .......+..+... ..+|.+.+.++....++.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 4568999999999999999999999 89999999997531 12222233221111 12466666777777777888
Q ss_pred ccCcceecccccccCceecCCChhhhcc-------CCCChhhhhhhhhhhhccccc-------------C---CCCchhH
Q 008281 116 NSRARVLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAF-------------E---PPMRQWQ 172 (571)
Q Consensus 116 ~~~g~~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~~~-------------~---~~~~~~~ 172 (571)
+.+|++|||+|.+|+|+|.|+.+.+|+. .+|+|++++|||+++|+.+.- . ....+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 9999999999999999999999965432 579999999999999986521 0 1123446
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCceeeeeEEEcCCCceecHHH-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEE
Q 008281 173 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAH 250 (571)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~ 250 (571)
+.+.++++++|++...........++...... ..+|.|+++.. |++ ..++.|++|++++.|++|+++++ +++
T Consensus 162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~-~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~ 235 (560)
T PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRT-VTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAV 235 (560)
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCceeEEEeee-cCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEE
Confidence 77888999999875433221112222211111 35788888765 776 44578999999999999999854 999
Q ss_pred EEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc--------CCCCcccccCcccCCCCCCCCCceEEecCCC
Q 008281 251 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 322 (571)
Q Consensus 251 gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg--------~~gi~~~~~~p~VG~nl~dh~~~~v~~~~~~ 322 (571)
||++.+.++ ..++. ++|+||||||+|+||+|||+|| +.||+++.++|+||+||+||+.+.+.+.++.
T Consensus 236 GV~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~ 310 (560)
T PRK02106 236 GVEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQ 310 (560)
T ss_pred EEEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCC
Confidence 999986443 33433 6899999999999999999999 7899999999999999999999988887665
Q ss_pred cccchh-hHhhcc-hhhhhHHHhhcCCcccCCCCCCCCCCCccccccccccCCCCCCCHHHHHHHHhhhccCCCCCccce
Q 008281 323 PVEVSL-IQVVGI-TQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 400 (571)
Q Consensus 323 ~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (571)
+..... ...+.. .....|.....|..... .....++.... ..+. .+.... .++...+...... .......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-~~~~--~p~~~~-~~~~~~~~~~~~~-~~~~~~~ 382 (560)
T PRK02106 311 PVSLYPALKWWNKPKIGAEWLFTGTGLGASN---HFEAGGFIRSR-AGVD--WPNIQY-HFLPVAIRYDGSN-AVKGHGF 382 (560)
T ss_pred CcccccccchhhhhHHHHHHHhcCCCCcccc---ccceeeEEecC-CCCC--CCCeEE-EEeeccccccCCC-CCCCCeE
Confidence 432100 000000 00112322222221000 00000000000 0000 000000 0000000000000 0001122
Q ss_pred eEEEeecccccceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhccccCCCC
Q 008281 401 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPV 480 (571)
Q Consensus 401 ~~~~~~~~p~s~g~v~l~s~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (571)
.+...+..|.|+|+|+|+++||++.|+|+++|+.++.|++++.+++++++++++++++..+...+.
T Consensus 383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------- 448 (560)
T PRK02106 383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI-------------- 448 (560)
T ss_pred EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc--------------
Confidence 334456789999999999999999999999999999999999999999999999887766543221
Q ss_pred CCCCC-CCCChHHHHHHHHhccccccccccccccC----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHH
Q 008281 481 NLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRY 555 (571)
Q Consensus 481 ~~~p~-~~~~~~~~~~~~~~~~~~~~H~~GTc~MG----~VVD~~~rV~G~~NL~V~DaSv~P~~~~~NP~lTi~Ala~r 555 (571)
.|. ..++++++++|++....+.+|++|||||| +|||+++||||++||||+|+||||+.+++||++|+||||+|
T Consensus 449 --~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer 526 (560)
T PRK02106 449 --SPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK 526 (560)
T ss_pred --CCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence 122 23578899999999988999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 008281 556 MGVRILSER 564 (571)
Q Consensus 556 ~a~~i~~~~ 564 (571)
+||+|+++.
T Consensus 527 aAd~I~~~~ 535 (560)
T PRK02106 527 AADLIRGRT 535 (560)
T ss_pred HHHHHhccC
Confidence 999887653
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.4e-71 Score=599.81 Aligned_cols=481 Identities=27% Similarity=0.370 Sum_probs=338.0
Q ss_pred cEEEECCCcchHHHHHhhcC-C-CeEEEEecCCCCCC-CCCcccchhhhh----ccCCCCCCCCCCcccCCCcccccCcc
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG-NPNITNLGSFGA----ALSDLSSTSPSQRFISEDGVINSRAR 120 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~ 120 (571)
||||||||++|+++|.||+| + .||||||+|+.... ......+..+.. ...+|.+.+.++....++.+.+++|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 6 79999999975321 222223322111 11256666777777778888999999
Q ss_pred eecccccccCceecCCChhhhcc-------CCCChhhhhhhhhhhhcccccC---------------CCCchhHHHHHHH
Q 008281 121 VLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAFE---------------PPMRQWQSAVRDG 178 (571)
Q Consensus 121 ~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~~~~---------------~~~~~~~~~~~~~ 178 (571)
+|||+|.+|+++|.|+++.+|+. .+|+|+++.|||+++|..+... +...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999964432 4799999999999999765411 1123446778888
Q ss_pred HHHcCCCCCCCCccCCCCceeeeeEEEcCCCceecHHH-hhhh-cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe
Q 008281 179 LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLEY-ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 256 (571)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~~-~l~~-~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~ 256 (571)
++++|++...........++...... ..+|.|+++.. |++. .++.|++|+++++|++|+++++ +++||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~~-~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDST-VHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEEE-cCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 99999875433221111122211112 25788888765 7764 4588999999999999999854 999999985
Q ss_pred CCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc--------CCCCcccccCcccCCCCCCCCCceEEecCCCcccchh
Q 008281 257 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL 328 (571)
Q Consensus 257 ~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg--------~~gi~~~~~~p~VG~nl~dh~~~~v~~~~~~~~~~~~ 328 (571)
.+...++. ++|+||||||+|+||+||++|| +.||+++.++|+||+|||||+.+.+.+.++.+.....
T Consensus 235 -~~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 235 -GGRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred -CCcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 34434444 6899999999999999999999 8999999999999999999999988887765432110
Q ss_pred -hHhhc-chhhhhHHHhhcCCcccCCCCCCCCCCCccccccccccCCCCCCCHHHHHHHHhhhccCCCCCccceeEEEee
Q 008281 329 -IQVVG-ITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKV 406 (571)
Q Consensus 329 -~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (571)
...+. ......|.....+...... ....+++..... .. .++... .+...... .............+....
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~-~~--~p~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGASNH---FEGGGFVRSNDD-VD--YPNIQY-HFLPVAIR-YDGTKAPKAHGFQVHVGP 381 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccccc---cceeEEEecCCC-CC--CCCeEE-EEEeeeec-cCCCCCCCCCcEEEEEee
Confidence 00000 0001123322222211000 000001100000 00 000000 00000000 000000001112334456
Q ss_pred cccccceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhccccCCCCCCCC-C
Q 008281 407 MGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLP-R 485 (571)
Q Consensus 407 ~~p~s~g~v~l~s~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 485 (571)
+.|.|||+|+|+++||.+.|.|+++|+.+|.|++.++++++.+++++++.++..+...+. .| .
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~p~~ 445 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI----------------SPGP 445 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc----------------CCCC
Confidence 789999999999999999999999999999999999999999999999887766533221 12 1
Q ss_pred CCCChHHHHHHHHhccccccccccccccC------cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHH
Q 008281 486 HSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 559 (571)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rV~G~~NL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~ 559 (571)
...++++|++|+|....+.+|++|||||| +|||+++||||++||||||+||||++|++||++|+||||||+||+
T Consensus 446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 525 (532)
T TIGR01810 446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525 (532)
T ss_pred CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 24678999999999999999999999999 499999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 008281 560 ILSE 563 (571)
Q Consensus 560 i~~~ 563 (571)
|+++
T Consensus 526 I~~~ 529 (532)
T TIGR01810 526 IRGK 529 (532)
T ss_pred Hhcc
Confidence 8754
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-66 Score=551.37 Aligned_cols=482 Identities=26% Similarity=0.355 Sum_probs=350.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCCCcccchhhhhcc----CCCCCCCCCCcccCCCccccc
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINS 117 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 117 (571)
+..+|||||||||.+|+++|.+|++ |.+|||||+|+.... ..+..+..+.... .+|.+.+.++.+..++.+.++
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRR-PLIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCc-cceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4679999999999999999999999 999999999975332 1233343443333 358888888888889999999
Q ss_pred CcceecccccccCceecCCChhhhcc-------CCCChhhhhhhhhhhhcccccC--------C-----------CCchh
Q 008281 118 RARVLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAFE--------P-----------PMRQW 171 (571)
Q Consensus 118 ~g~~lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~~~~--------~-----------~~~~~ 171 (571)
+|++|||+|++|+|.|.|+++.+|+. .+|+|++++|||+++|+..... + ...+.
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999999976532 5699999999999999754431 0 11234
Q ss_pred HHHHHHHHHHcCCCCCCCCccCCCCceeeeeEEEcCCCceecHHH-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeE
Q 008281 172 QSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVA 249 (571)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~ 249 (571)
...+.++..++|++....++.....++......+ .+|.|+++.. |++ +.+++|++|++++.|++|+++++ |+
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~ 236 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA 236 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence 5667777788898765443322222222222222 3888888776 776 57889999999999999999988 99
Q ss_pred EEEEEEeCCCc-eeEEeeecCCCeeEEEecCCcCcHHHHHhhc--------CCCCcccccCcccCCCCCCCCCceEEecC
Q 008281 250 HGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPS 320 (571)
Q Consensus 250 ~gV~~~~~~g~-~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg--------~~gi~~~~~~p~VG~nl~dh~~~~v~~~~ 320 (571)
+||++...++. ..... ++++||||||+|+||+|||+|| ++++.++.++|.||+|||||+...+.+..
T Consensus 237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~ 312 (542)
T COG2303 237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA 312 (542)
T ss_pred EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence 99999854432 23333 6899999999999999999999 68999999999999999999999888776
Q ss_pred CCcccchhhHhhcchh--hhhHHHhhcCCcccCCCCCCCCCCCccccccccccCCCCCCCHHHHHHHHhhhccC--CCCC
Q 008281 321 PVPVEVSLIQVVGITQ--FGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL--DDPA 396 (571)
Q Consensus 321 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 396 (571)
+.+............. ...|.....|.... .....+ +....+....++. +.++....-. ....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~g--------f~~~~~~~~~p~~-~~~~~~~~~~~~~~~~ 379 (542)
T COG2303 313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGAT----NHFEGG--------FVRSGPAGEYPDG-QYHFAPLPLAIRAAGA 379 (542)
T ss_pred cCccccccccccccccccceeEEeecCCCccc----cccccc--------ccccCccccCCCc-cccccccccccccccc
Confidence 6543111110000000 01122212221100 000011 1111111112221 1111111100 1122
Q ss_pred ccceeEEEeecccccceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhcccc
Q 008281 397 FRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTA 476 (571)
Q Consensus 397 ~~~~~~~~~~~~p~s~g~v~l~s~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 476 (571)
....++.....+|.|+|.|.+++.|+...|.|+++|.+++.|++.+..+++..++++.+..+..+...+..
T Consensus 380 ~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~--------- 450 (542)
T COG2303 380 EHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELA--------- 450 (542)
T ss_pred CCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhc---------
Confidence 23445666778999999999999999999999999999999999999999999999987666655544421
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhccccccccccccccC-----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHH
Q 008281 477 SAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 551 (571)
Q Consensus 477 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~NL~V~DaSv~P~~~~~NP~lTi~A 551 (571)
+.| ...+++++.+|++....+.+|++|||||| +|+|+++||||++||||+|+|+||+++++||++||+|
T Consensus 451 -----~~~-~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~a 524 (542)
T COG2303 451 -----PGP-RVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIA 524 (542)
T ss_pred -----CCC-ccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHH
Confidence 111 34667799999999999999999999999 3555999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 008281 552 LGRYMGVRILSE 563 (571)
Q Consensus 552 la~r~a~~i~~~ 563 (571)
||+|+|++|+++
T Consensus 525 la~raA~~I~~~ 536 (542)
T COG2303 525 LAERAADHILGD 536 (542)
T ss_pred HHHHHHHHHhhc
Confidence 999999999873
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=4.1e-50 Score=422.00 Aligned_cols=464 Identities=18% Similarity=0.165 Sum_probs=279.1
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCCC-------c--c-cchhhh----hccCC-CCC-------CC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN-------I--T-NLGSFG----AALSD-LSS-------TS 103 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~-------~--~-~~~~~~----~~~~~-~~~-------~~ 103 (571)
|||||||+|++|+++|+.|++ |.||+|||+|........ + . +...+. ..++. ..+ +.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 999999999986642110 0 0 001111 11110 000 00
Q ss_pred C-------C-CcccC-C--------Ccc-cccCcceecccccccCceecCCChhhhc--cCCCC--hhhhhhhhhhhhcc
Q 008281 104 P-------S-QRFIS-E--------DGV-INSRARVLGGGSCLNAGFYTRAAPYYVR--EVGWD--ERLVNESYQWVEKV 161 (571)
Q Consensus 104 ~-------~-~~~~~-~--------~~~-~~~~g~~lGG~s~~n~~~~~r~~~~~~~--~~gw~--~~~l~~~~~~~e~~ 161 (571)
. + ...+. + ..+ ...+-+.+||+|.+|++.+.|..++... ..+|+ +++|+|||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 0 0 00010 0 011 1346789999999999999999984311 14687 79999999999999
Q ss_pred cccCCCCc--hh--HHHHHHHHHHc-CC-CCCCCCccCCCCceeeeeEEEcCCCceecHH-Hhhh-----hcCCCCcEEE
Q 008281 162 VAFEPPMR--QW--QSAVRDGLVEV-GV-LPYNGFTYDHMYGTKIGGTIFDQNGQRHTAA-DLLE-----YANPSGLTLL 229 (571)
Q Consensus 162 ~~~~~~~~--~~--~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~-~~l~-----~~~~~g~~i~ 229 (571)
+++.+... +. ...+....+++ |. +.... ...|... . ++.+.+++.. +.++ .+++.|++|+
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----PlA~~~~--~-c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~ 232 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL-----PLACHRR--T-DPTYVEWHSADTVFDLQPNDDAPSERFTLL 232 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccC-----chhhhcc--C-CCccceecCCccchhhhhhhhccCCCEEEE
Confidence 88776321 11 11111222222 22 11110 0011110 0 1223444332 3232 2247889999
Q ss_pred cCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhhcCC--CCc--cccc--Cc
Q 008281 230 LHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--NIT--VVLD--QP 302 (571)
Q Consensus 230 ~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg~~--gi~--~~~~--~p 302 (571)
+++.|++|++++++ ..+|++|++.+. +|+.+++. ++.||||||+|+||||||+|+.. +.| +.+. ++
T Consensus 233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Nss~~g 305 (544)
T TIGR02462 233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPPPLLP 305 (544)
T ss_pred cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCCCCCC
Confidence 99999999998641 138999999986 57776665 78999999999999999999832 223 4444 48
Q ss_pred ccCCCCCCCCCceEEecCCCcccchhhHhhcchhhhhHHHhhcCC--cccCCCCCCCCCCCccccccccccCCCCCCCHH
Q 008281 303 LVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGE--NFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPE 380 (571)
Q Consensus 303 ~VG~nl~dh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (571)
.|||||+||+...+.+.++.+....+........ .|....... .+..+ ..+..+.....+ .... ......+..
T Consensus 306 ~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~-~~~~~~w~~ 380 (544)
T TIGR02462 306 SLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLD--WWKEKVANHMMKHPED-PLPIPFRDPEPQ-VTTP-FTEEHPWHT 380 (544)
T ss_pred CCCcchhcCCCccEEEEecchhhhhccCCccccc--cccccchhhhccccCC-cccccccccCcc-cccc-cccccccch
Confidence 9999999999988777665542111100000000 000000000 00000 000000000000 0000 000000000
Q ss_pred -HHHHHHh--hh-ccCCCC-CccceeEEEeecccccceEEEecC--CCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHH
Q 008281 381 -AIAEAIE--NM-KALDDP-AFRGGFILEKVMGPVSTGHLELRT--RNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKII 453 (571)
Q Consensus 381 -~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~p~s~g~v~l~s--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~ 453 (571)
..+..+. .. +..... ......+.+.+ |..+++|+|++ +|.+|.|++.++|..++.|++.+..+++.+.+++
T Consensus 381 ~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~ 458 (544)
T TIGR02462 381 QIHRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVA 458 (544)
T ss_pred hhhhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 0011110 00 000001 11222344444 77789999975 5999999999999999999999999999999999
Q ss_pred hcccccccccccCcchhhhccccCCCCCCCCCCCCChHHHHHHHHhccccccccccccccC-----cccCCCCeEeccCC
Q 008281 454 ESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDA 528 (571)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~N 528 (571)
+.++..... . .+ .| .......|++|||||| +|||+++||||++|
T Consensus 459 ~~~G~~~~~--~-----------------~~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~N 507 (544)
T TIGR02462 459 AKIGGYLPG--S-----------------LP----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKN 507 (544)
T ss_pred HHcCCCccc--c-----------------cc----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCC
Confidence 887532110 0 00 00 0123578999999999 79999999999999
Q ss_pred ceEeeccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 008281 529 LRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 563 (571)
Q Consensus 529 L~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~ 563 (571)
|||+|+|+||+.+++||++|+||||+|+|++|+++
T Consensus 508 L~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 508 LYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred eEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988865
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.1e-41 Score=341.71 Aligned_cols=256 Identities=34% Similarity=0.477 Sum_probs=177.6
Q ss_pred ccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCCCCCCCCcccchhhhhcc---CCCCCCCCCCcccCCCcccccCcce
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSRARV 121 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 121 (571)
|||||||||++|+++|.+|++ + .||||||+|+...... ......+...+ .++.+...++....++...+++|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 7999999999765433 11111111111 1233444555666777888889999
Q ss_pred ecccccccCceecCCChhhhcc-------CCCChhhhhhhhhhhhccc-------------cc---CCCCchhHHHHHHH
Q 008281 122 LGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVV-------------AF---EPPMRQWQSAVRDG 178 (571)
Q Consensus 122 lGG~s~~n~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~e~~~-------------~~---~~~~~~~~~~~~~~ 178 (571)
|||+|.+|++++.|+++.+|+. .+|+|+++.+||+++|... .+ .+...+....+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999965432 4699999999999999432 22 12233456778899
Q ss_pred HHHcCCCCCCCCccCCCCceeeeeEE-EcCCCceecHHH-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEE
Q 008281 179 LVEVGVLPYNGFTYDHMYGTKIGGTI-FDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR 255 (571)
Q Consensus 179 ~~~~g~~~~~~~~~~~~~~~~~g~~~-~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~ 255 (571)
++++|++........ ..|..+... .+++|.|+++.. ||+ +.++.|++|+++++|++|++++++ .+++||++.
T Consensus 160 ~~~~G~~~~~~~~~~--~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~ 234 (296)
T PF00732_consen 160 AEELGIPVPQDFNGC--DPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV 234 (296)
T ss_dssp HHHTTHHBCSCTTSS--TCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred HHHcCCccccccccc--cccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence 999998722222111 222222111 247888887755 776 556679999999999999996321 399999999
Q ss_pred eCCCc-eeEEeeecCCCeeEEEecCCcCcHHHHHhhc--------CCCCcccccCcccCCCCCCCCC
Q 008281 256 DATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 313 (571)
Q Consensus 256 ~~~g~-~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg--------~~gi~~~~~~p~VG~nl~dh~~ 313 (571)
+.++. ...+. ++|+||||||+|+||+|||+|| +.||+++.++| ||+||||||.
T Consensus 235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~~ 296 (296)
T PF00732_consen 235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHPV 296 (296)
T ss_dssp ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--EE
T ss_pred ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhcccC
Confidence 87776 23333 5899999999999999999999 68999999999 9999999973
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=3.2e-33 Score=249.14 Aligned_cols=139 Identities=34% Similarity=0.570 Sum_probs=110.6
Q ss_pred cccceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhccccCCCCCCCCCCCC
Q 008281 409 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSN 488 (571)
Q Consensus 409 p~s~g~v~l~s~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 488 (571)
|.|+|+|+|+++|+++.|.|+++|+.+++|++.+.++++.+++++.+. +.++......+... +. .......
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~-------~~-~~~~~~~ 71 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPS-------PF-CPDASLD 71 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGC-------SC-CGCSTTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccccccc-------cc-ccccccc
Confidence 789999999999999999999999999999999999999999999998 65554322210000 00 0011346
Q ss_pred ChHHHHHHHHhccccccccccccccC-----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHH
Q 008281 489 ASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 556 (571)
Q Consensus 489 ~~~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~NL~V~DaSv~P~~~~~NP~lTi~Ala~r~ 556 (571)
++++|++|++....+.+|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||||+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 67899999999999999999999999 999999999999999999999999999999999999999996
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.55 E-value=1.9e-13 Score=146.60 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=45.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
+...+++.|++|++++.|++|+.+++ +++||.+...+++..++ .++.||||+|++....
T Consensus 196 L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i-----~a~~VVlAtGG~~~n~ 254 (506)
T PRK06481 196 LLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTI-----SSKAVVVTTGGFGANK 254 (506)
T ss_pred HHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEE-----ecCeEEEeCCCcccCH
Confidence 44455677999999999999987654 99999987545544455 3799999999987654
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.44 E-value=1.5e-12 Score=140.80 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=46.8
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHH
Q 008281 218 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 287 (571)
Q Consensus 218 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LL 287 (571)
+..+++.|++|++++.|++|+.+++ +|+||.+.+ +|+...+. ++|.||||+|+++...=|
T Consensus 224 ~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 224 FAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHH
Confidence 3345678999999999999997543 999998875 56555555 678999999999976433
No 11
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.44 E-value=1.5e-12 Score=139.14 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=50.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhh
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 290 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~S 290 (571)
+...+++.|++|+++++|++|+.+++ +++||.+.+.+++...+. ++.||||+|++.+++.++..
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHHh
Confidence 44456678999999999999998654 899999864456555554 68999999999988766654
No 12
>PRK07121 hypothetical protein; Validated
Probab=99.42 E-value=3.2e-12 Score=137.17 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=48.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 288 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl 288 (571)
+...+++.|++|+++++|++|+.++++ +++||++.+ +++...+. ++|.||||+|++...+-|+
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHH
Confidence 444567789999999999999987543 899999974 55555554 3499999999988654444
No 13
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.40 E-value=3e-12 Score=139.27 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=46.7
Q ss_pred hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 219 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 219 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
..++..|++|++++.|++|+.++++ +|+||.+.. +|+.+++. +++.||||+|++....
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~ 278 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDM 278 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCH
Confidence 3566789999999999999997654 999999864 66666665 4568999999998743
No 14
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.39 E-value=6.1e-12 Score=136.35 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=47.8
Q ss_pred hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHH
Q 008281 219 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 288 (571)
Q Consensus 219 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl 288 (571)
..+++.|++|+++++|++|+.+++ +|+||++.. +|+.+++. +++.||||+|++....=|+
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHH
Confidence 456778999999999999998755 999999974 56666665 4578999999998854443
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.38 E-value=3.3e-12 Score=134.62 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=45.3
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCcHHHHHh
Q 008281 218 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 289 (571)
Q Consensus 218 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~ 289 (571)
...+++.+++|+++++|++|+.+++ +|+||++.+ .+|+.+++. ++.||||+|++.. .++..
T Consensus 148 ~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-----A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 148 AKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-----AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-----ESEEEE----BGG-HHHHH
T ss_pred HHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-----eeEEEeccCcccc-ccccc
Confidence 3456667899999999999999866 999999984 467666665 6699999999999 54433
No 16
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.37 E-value=5.9e-12 Score=124.47 Aligned_cols=168 Identities=21% Similarity=0.283 Sum_probs=101.9
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcceec
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLG 123 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 123 (571)
+.+||||||+|++|+.+|..+++ |.+|+|||+++....+- ..-|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKi-----------------------------------l~sG 46 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKI-----------------------------------LMSG 46 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcccccee-----------------------------------EecC
Confidence 57999999999999999999999 99999999998654211 1122
Q ss_pred ccccccCceecCCChhhhccCCCChhhhhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeE
Q 008281 124 GGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 203 (571)
Q Consensus 124 G~s~~n~~~~~r~~~~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 203 (571)
|+. .|-....- ...+..+.+=....+.+.+.+. -.+.+++.++..|+.-+- ...+.
T Consensus 47 gGr-CN~Tn~~~-~~~~ls~~p~~~~fl~sal~~f------------t~~d~i~~~e~~Gi~~~e----------~~~Gr 102 (408)
T COG2081 47 GGR-CNFTNSEA-PDEFLSRNPGNGHFLKSALARF------------TPEDFIDWVEGLGIALKE----------EDLGR 102 (408)
T ss_pred CCC-cccccccc-HHHHHHhCCCcchHHHHHHHhC------------CHHHHHHHHHhcCCeeEE----------ccCce
Confidence 222 22211111 1112111000011222222211 135577888888875221 11123
Q ss_pred EEcCCCceecHHH-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcC
Q 008281 204 IFDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 204 ~~~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
+||...+-++... ++..+++.|++|+++++|.+|..++. +..+..++|. ++. ++.+|||+|+..
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~S 167 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGKS 167 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCcC
Confidence 4444333333333 56677889999999999999998764 3445445665 343 799999999988
Q ss_pred cHHH
Q 008281 283 SPQL 286 (571)
Q Consensus 283 tp~L 286 (571)
-|++
T Consensus 168 ~P~l 171 (408)
T COG2081 168 WPKL 171 (408)
T ss_pred CCCC
Confidence 8863
No 17
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.36 E-value=1.3e-11 Score=132.81 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=44.8
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHH
Q 008281 221 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 287 (571)
Q Consensus 221 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LL 287 (571)
.++.|++|+++++|++|+.+++ +|+||++.. +|+..++. ++|.||||||+++..+-|
T Consensus 184 ~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m 240 (513)
T PRK12837 184 ARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDM 240 (513)
T ss_pred HhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHH
Confidence 3446999999999999998754 999999864 56666665 557899999999755433
No 18
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.34 E-value=1.7e-11 Score=128.88 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=42.5
Q ss_pred hhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+ ++.|++|++++.|++|+.+++ +++||.+.+ ++..+++. ++.||||+|++..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence 44433 456999999999999988755 899988764 45444554 6899999999764
No 19
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.32 E-value=3.5e-11 Score=130.64 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=33.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..++||||||+|.+|+++|..+++ |.+|+|||++.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 468999999999999999999999 99999999997
No 20
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.29 E-value=6.7e-11 Score=129.47 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=45.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|+.++.|++|+.++++ ++.||.+.+. +|+...+. +|.||||+|+++.
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 251 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGR 251 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCcc
Confidence 344455679999999999999987443 9999998753 56655553 8999999999875
No 21
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.29 E-value=5.2e-12 Score=130.38 Aligned_cols=166 Identities=23% Similarity=0.349 Sum_probs=80.5
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcceeccc
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGG 125 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 125 (571)
|||||||+|++|+++|..|++ |.+|+||||+.....+- ...|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKi-----------------------------------l~tG~- 44 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKI-----------------------------------LITGN- 44 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH-----------------------------------HHCGG-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccce-----------------------------------eecCC-
Confidence 899999999999999999999 99999999997653100 01121
Q ss_pred ccccCceecCCCh-hhhccCCCChhhhhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeEE
Q 008281 126 SCLNAGFYTRAAP-YYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI 204 (571)
Q Consensus 126 s~~n~~~~~r~~~-~~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 204 (571)
+-.|-... .... ++....+-..+.+.+.+++. -...+.+.+++.|++.. ....+.+
T Consensus 45 GrCN~tn~-~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~----------~~~~gr~ 101 (409)
T PF03486_consen 45 GRCNLTNL-NIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTK----------IEEDGRV 101 (409)
T ss_dssp GT-EEEET-TSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EE----------E-STTEE
T ss_pred CCcccccc-ccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEE----------EcCCCEE
Confidence 11111110 1111 11111000011111111111 12445667778887521 0011234
Q ss_pred EcCCCceecHHH-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 205 FDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 205 ~~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+|...+..+... ++..+++.|++|+++++|+.|..+++ .+..|++. +++. +. ++.||||+|+..-
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~~--~~-----a~~vILAtGG~S~ 167 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGGE--YE-----ADAVILATGGKSY 167 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTEE--EE-----ESEEEE----SSS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Cccc--cc-----CCEEEEecCCCCc
Confidence 444333333333 55566778999999999999999877 66677762 3332 32 7999999999888
Q ss_pred HH
Q 008281 284 PQ 285 (571)
Q Consensus 284 p~ 285 (571)
|+
T Consensus 168 p~ 169 (409)
T PF03486_consen 168 PK 169 (409)
T ss_dssp GG
T ss_pred cc
Confidence 86
No 22
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=6.4e-11 Score=128.42 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=45.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|++++.|++|+.++++ +++||.+.+ .+|....+. +|.||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 334556689999999999999987652 699998876 566655554 7999999999864
No 23
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28 E-value=8.6e-11 Score=127.53 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=48.7
Q ss_pred hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhh
Q 008281 219 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 290 (571)
Q Consensus 219 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~S 290 (571)
..+++.|++|+++++|++|+.+++ +|+||++.. +++.+++. +++.||||+|++.+.+-|+..
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence 355678999999999999998754 999999874 56665665 456899999999987665544
No 24
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=6.4e-11 Score=130.06 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=44.0
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
.+++.|++|++++.|++|+.+++ +|+||.+.+. +|..+.+ .+|.||||+|+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERH-----TADAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence 45678999999999999998755 9999999864 5654455 37899999999875
No 25
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.27 E-value=3.1e-11 Score=127.93 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=46.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
+...+++.|++|+++++|++|+.++++ +++||++.+.+++...+ +++.||||+|++....
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~ 195 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNK 195 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCH
Confidence 444566789999999999999987553 89999998655543333 4799999999987643
No 26
>PRK12839 hypothetical protein; Provisional
Probab=99.26 E-value=7.7e-11 Score=127.84 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=47.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 287 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LL 287 (571)
++..+.+.|++|++++.|++|+.++++ +|+||.+.+.+|. .++. ++|.||||+|++....-|
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHH
Confidence 344566789999999999999987543 9999998765554 3444 579999999999874433
No 27
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=1.1e-10 Score=126.73 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=44.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcC
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
+...+.+.|+++++++.|++|+.+++ +|+||.+.+. +|....+ .+|.||||+|+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 33445557999999999999998755 9999999864 4444444 3799999999987
No 28
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.25 E-value=1.1e-10 Score=126.35 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 218 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 218 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
...+.+.|++++++++|+.|..+++ +++||++.+. +++..++. ++.||+|||+ ++.+|+...+
T Consensus 156 ~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VVnAaG~-wa~~l~~~~g 219 (546)
T PRK11101 156 MLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVVNAAGI-WGQHIAEYAD 219 (546)
T ss_pred HHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEEECCCh-hHHHHHHhcC
Confidence 3456678999999999999998765 8999998753 34444554 7899999996 6788876554
No 29
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.23 E-value=1.2e-10 Score=127.40 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=45.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|+.++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|++..
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 344566789999999999999984443 999999865 35655555 37899999999865
No 30
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.6e-10 Score=125.89 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=45.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|..+.+. +|.||||+|++..
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 444556789999999999999986443 999999864 356655554 7999999999875
No 31
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.23 E-value=2.3e-10 Score=124.90 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=46.3
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHH
Q 008281 218 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 288 (571)
Q Consensus 218 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl 288 (571)
...+++.|++|++++.|++|+.+++ +++||.+.+.++ ...+. +++.||||+|++....-++
T Consensus 221 ~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 221 AKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHH
Confidence 3355678999999999999998765 999999985333 33444 4578999999997655444
No 32
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=1.6e-10 Score=126.36 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=45.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|..+.+. +|.||||+|+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 444556689999999999999987643 999999864 356655554 7899999999875
No 33
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.22 E-value=2e-10 Score=125.28 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=46.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 287 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LL 287 (571)
+...+++.|++|+++++|++|+.+++ +++||.+.+ ++...++. +++.||||+|++....-+
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHH
Confidence 33456778999999999999998754 999999875 34444554 348999999999875544
No 34
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.21 E-value=2.7e-10 Score=124.30 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=47.9
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 288 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl 288 (571)
++..+++.|++|++++.|++|+.+++ +++||.+.. +|+.+++. +++.||||+|++....=|+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHH
Confidence 44456678999999999999998654 999999874 55555554 4689999999998864333
No 35
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.21 E-value=1.9e-10 Score=134.36 Aligned_cols=58 Identities=16% Similarity=0.320 Sum_probs=45.1
Q ss_pred CCCcEEEcCcEEEEEEecCCC----CCCCeEEEEEEEeC---CCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 223 PSGLTLLLHASVHKVLFRIKG----KARPVAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 223 ~~g~~i~~~~~V~~i~~~~~~----~~~~~~~gV~~~~~---~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
+.|++|++++.|++|+.++++ +...+|+||++.+. +|+.+.+. +|.||||+|++....
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence 369999999999999987521 11248999999865 67665554 799999999998754
No 36
>PLN02815 L-aspartate oxidase
Probab=99.21 E-value=1.3e-10 Score=126.08 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=43.5
Q ss_pred hhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+ +..|++|+.++.|++|+.++++ +..+|+||.+.+. +|....+. +|.||||+|+++.
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence 33433 3469999999999999986432 1114999998653 56555553 7999999999864
No 37
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.21 E-value=1.3e-10 Score=125.60 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=40.9
Q ss_pred CCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 222 NPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++.|++|++++.|++|+.++ ++ +++||.+.+ +|....+ .+|.||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence 35699999999999999874 23 999998874 5655444 37999999999753
No 38
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=2.4e-10 Score=124.61 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=44.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|++++.|++|+.+++ ++.||...+ .+|+...+. ++.||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence 44456678999999999999998755 999998754 355544553 7999999999864
No 39
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.19 E-value=2.8e-10 Score=123.06 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=41.9
Q ss_pred CCCCcEEEcCcEEEEEEecCCC-CCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 222 NPSGLTLLLHASVHKVLFRIKG-KARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+.+|++|++++.|++|+.+++. ....+++||.+.+. +|....+ .++.||||+|++..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence 4569999999999999986410 00129999998763 4555555 37999999999864
No 40
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.17 E-value=4.4e-10 Score=121.63 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...++||||||+|.+|+.+|.++++ |.+|+||||+...
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 3568999999999999999999999 9999999999753
No 41
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=5e-10 Score=122.29 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=44.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+.+.|++++.++.|++|+.++++ ++.||.+.+. +|....+ .+|.||||+|++..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 344456689999999999999987543 9999998653 4544444 48999999999864
No 42
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.17 E-value=3.4e-10 Score=121.53 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=41.4
Q ss_pred CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 224 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 224 ~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
.|++|++++.|++|+.+++ ++.||.+.+.+|+...+. ++.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 6999999999999988755 999999876556554553 7999999999874
No 43
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.17 E-value=2.4e-10 Score=125.72 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=45.0
Q ss_pred hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 219 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 219 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
..+.+.|++|+.++.|++|+.+++ ++.||.+.+ .+|..+.+. +|.||||+|++..
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 455678999999999999998765 999999986 467655554 7999999999864
No 44
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=3e-10 Score=124.00 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=39.8
Q ss_pred CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 225 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 225 g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+++++.++.|++|+.++++ +|+||.+.+. +++.+.+ .+|.||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 4899999999999986543 9999999864 3444444 48999999999875
No 45
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.14 E-value=6.6e-10 Score=121.10 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=41.4
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 222 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+..|+++++++.|++|+.+++ ++.||.+.+ .+|..+.+. +|.||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence 335899999999999998765 999998864 356555553 8999999999764
No 46
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=6.9e-10 Score=121.16 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=44.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|++++.|++|+.+++. +.++++||.+.+ .+|..+.+. +|.||||+|++..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~-~~g~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETP-SGPVAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCc-cCCcEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 344566789999999999999987520 001999998864 355544553 7999999999763
No 47
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.13 E-value=7.8e-10 Score=118.47 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=42.8
Q ss_pred hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+++ .|++|++++.|++|+.+++ +++||.+.+. +....+ .++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 3344444 7999999999999998755 8999988754 433444 37999999999864
No 48
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=111.33 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=45.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
|...+...|++|.++++|++|..+++ .++-+.. .+|+.+ + .+|.||.||| ..+.+|+.++|
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~~~--~~g~~~-~-----~ak~Vin~AG-l~Ad~la~~~g 219 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSD-----GVFVLNT--SNGEET-L-----EAKFVINAAG-LYADPLAQMAG 219 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEEEe--cCCcEE-E-----EeeEEEECCc-hhHHHHHHHhC
Confidence 55556667999999999999999876 2222222 366554 4 3899999999 47899999998
No 49
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=7.4e-10 Score=121.02 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=43.0
Q ss_pred hhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+ +..|++++.++.|++|+.+++ +++||.+.+. +|....+. ++.||||+|++..
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~~ 201 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVFQ-----AKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCcEEEcCchhcc
Confidence 33433 346999999999999998765 9999988653 55544443 7999999999853
No 50
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.12 E-value=8.6e-10 Score=119.93 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 222 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+..|++++.++.|++|+.+++ +++||.+.+ .+|....+. +|.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 346899999999999998755 999998865 356555554 7999999999764
No 51
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.10 E-value=8.5e-10 Score=120.56 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=44.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
++..+.+.|++|++++.|++|+.+++ +++||.+.+ .+|+...+. +|.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 34445556999999999999998755 999998865 356544554 7999999999864
No 52
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=8.7e-10 Score=121.10 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++||||||||.+|+.+|.++++ |.+|+|||++..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 47999999999999999999999 999999999864
No 53
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.10 E-value=6.3e-10 Score=121.95 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=49.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
++..+.+.|++|+.+++|++|..++ ++ ++++|.+.+. +++.+++. ++.||+|||+ ++.+|+...+
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCH-hHHHHHHhcc
Confidence 4456677899999999999998874 32 8899998763 45444554 8999999997 6888887664
No 54
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.09 E-value=1.4e-10 Score=119.25 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=43.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
+...+++.|++|+++++|++|..+++ +++||.+. +|+ +. ++.||+|+|+ ++++|+..++
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence 33455667999999999999999887 88888874 553 33 6999999996 7888877665
No 55
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.06 E-value=1.9e-10 Score=104.91 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
..+|||+|||+|++|+++|++|++ |+||+|+|+...
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 358999999999999999999999 999999999854
No 56
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.04 E-value=2.1e-09 Score=117.54 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCc
Q 008281 223 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 223 ~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
..|++|++++.|++|+.++++ +|+||.+.+. +|....+. +|.||||+|+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence 458999999999999987553 9999999864 46545553 7899999999864
No 57
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.04 E-value=4.3e-09 Score=111.64 Aligned_cols=41 Identities=34% Similarity=0.557 Sum_probs=34.9
Q ss_pred ccCCCCCCccEEEECCCcchHHHHHhhcC-C--CeEEEEecCCC
Q 008281 39 TAAQPVSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 79 (571)
Q Consensus 39 ~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (571)
...+....|||||||||+.|+++|+.|++ + .+|+||||...
T Consensus 38 ~~~~~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 38 GNRLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccccCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 33444568999999999999999999998 3 69999999863
No 58
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.03 E-value=2.2e-09 Score=115.42 Aligned_cols=56 Identities=20% Similarity=0.381 Sum_probs=41.9
Q ss_pred hhhhcC-CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYAN-PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~-~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+. +.|++|+.++.|++|+.+++ +++||.+.+ ++....+ .++.||||+|++..
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence 334444 45999999999999987654 999999875 3433344 37899999999863
No 59
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.01 E-value=2.3e-09 Score=115.21 Aligned_cols=38 Identities=34% Similarity=0.550 Sum_probs=35.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
|+++|||||||||+.|+.+|+.|+. |+||+|||+++..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4678999999999999999999999 9999999998654
No 60
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.00 E-value=4.7e-09 Score=114.96 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=40.7
Q ss_pred hhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcC
Q 008281 219 EYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 219 ~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
..+.+ .|++|+.++.|++|+.+++ +++||.+.+ .+|....+. ++.||||+|++.
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~ 195 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA 195 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence 34444 4599999999999998765 999998754 345444553 799999999875
No 61
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.00 E-value=2.2e-09 Score=104.44 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
..+|||||||+|++|+++|++|++ |.+|+|||+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 458999999999999999999999 999999999854
No 62
>PRK08275 putative oxidoreductase; Provisional
Probab=99.00 E-value=3.1e-09 Score=115.58 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=43.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcC
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
+...+++.|++|++++.|++|+.++++ ++.||.+.+ .+|....+. +|.||||+|++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVIR-----AKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEEE-----CCEEEECCCCcc
Confidence 344556689999999999999987443 899998764 356544443 789999999975
No 63
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.99 E-value=4.2e-09 Score=113.26 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=35.6
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+|..+|||||||||+.|+.+|+.|++ |.||+|||+++..
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 45678999999999999999999999 9999999999654
No 64
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.7e-09 Score=97.89 Aligned_cols=35 Identities=34% Similarity=0.412 Sum_probs=32.4
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+-||||||+|++|+++|++||+ |.||+|+||.-.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 36799999999999999999999 999999999854
No 65
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.97 E-value=6.5e-09 Score=113.00 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=41.0
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcC
Q 008281 221 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 221 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
+...+++|+.++.|++|+.++++ .++++||.+.+ .+|..+.+. +|.||||+|++.
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~--~GrV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 191 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNT--PNRIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV 191 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCC--CCeEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence 33456799999999999986520 02999999865 356555554 799999999985
No 66
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.96 E-value=2.8e-08 Score=105.71 Aligned_cols=64 Identities=30% Similarity=0.388 Sum_probs=43.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
+...+++.|++|+++++|++|..++++ .+ .|.+.+ .+|...++. ++.||+|||+ ++.+|+..+|
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v-~v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~G 248 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDG----SW-TVTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSG 248 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC----eE-EEEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcC
Confidence 445566679999999999999875542 22 233332 234333443 7999999997 6788887776
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.95 E-value=4.8e-09 Score=101.73 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=33.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
..+|||||||+|++|+++|+.|++ |.+|+||||+..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 358999999999999999999999 999999999964
No 68
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.95 E-value=8.1e-09 Score=118.21 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcC
Q 008281 223 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 223 ~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
..++++.+++.+++|+.+++ +++||.+.+ .+|+.+.+. +|.||||+|+++
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCccc
Confidence 35899999999999998754 999999865 356655554 799999999985
No 69
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.95 E-value=6.4e-09 Score=109.37 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=31.5
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
+||||||||.+|+++|++|++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999974
No 70
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.94 E-value=2.2e-08 Score=105.21 Aligned_cols=39 Identities=38% Similarity=0.620 Sum_probs=33.9
Q ss_pred CCCCCCccEEEECCCcchHHHHHhhcC--C-CeEEEEecCCC
Q 008281 41 AQPVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGS 79 (571)
Q Consensus 41 ~~~~~~~DvIIVGsG~aG~~~A~~La~--g-~~VlvlE~G~~ 79 (571)
.+...+|||||||+|..|+++|+.|++ | .+|+||||+..
T Consensus 25 ~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 25 PEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 344678999999999999999999997 7 49999999853
No 71
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.92 E-value=1.6e-08 Score=105.68 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=49.3
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
.+...|.++++.++|++++.++ .++||++.|. +|+.+.++ ++.||.|||. ++-+++...+
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~------~v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~ 233 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREG------GVWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAG 233 (532)
T ss_pred HHHhcccchhhcceeeeeeecC------CEEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhc
Confidence 4566899999999999999875 3899999985 47777765 8999999995 7888888775
No 72
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.91 E-value=1.2e-08 Score=105.90 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+|||||||+|+.|+++|+.|++ |.+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 36999999999999999999999 999999999864
No 73
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.90 E-value=7.2e-09 Score=111.07 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=35.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
+..+|||||||||.||+.+|.++++ |.+|+||||.....
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3578999999999999999999999 99999999997543
No 74
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.89 E-value=8.5e-09 Score=109.84 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC---CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~ 78 (571)
+.++||||||+|.+|+++|++|++ |.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 557999999999999999999997 68999999985
No 75
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.88 E-value=2.2e-08 Score=106.61 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC---CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (571)
...|||||||||+.|+++|+.|++ |.+|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 457999999999999999999997 689999999864
No 76
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.87 E-value=1.1e-08 Score=108.13 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=44.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 288 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl 288 (571)
+...+++.|++|+++++|++|+.++ ++ +++||...+ ++ .++. +|.||||+|++...+-++
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i~-----ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRIT-----TQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEEE-----cCEEEEcCCCcccCHHHH
Confidence 4456677899999999999998863 32 889988742 22 3443 789999999998765443
No 77
>PLN02661 Putative thiazole synthesis
Probab=98.87 E-value=1.1e-08 Score=101.94 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=31.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~ 79 (571)
.++||+|||+|++|+++|+.|++ |.||+|||++..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 47899999999999999999996 799999998753
No 78
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.85 E-value=2e-08 Score=102.11 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=43.1
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCc
Q 008281 217 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 281 (571)
Q Consensus 217 ~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai 281 (571)
++. ..+++|++|+.++.+.+|+.+++. .+.||.+.+.++....+ .++.||||+|++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~ 195 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGL 195 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCC
Confidence 444 345699999999999999998873 55699998644434454 389999999985
No 79
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.85 E-value=3.4e-08 Score=103.34 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=38.9
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 85 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~ 85 (571)
|+++|||||||+|.+|+++|..|++ |+|||+||+.+.+++...
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4678999999999999999999999 999999999998876544
No 80
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.84 E-value=3.5e-08 Score=102.71 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
|||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999864
No 81
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.83 E-value=4.5e-08 Score=104.28 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+||||||+|.+|+.+|.+|++ |.+|+|||++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999 99999999984
No 82
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.81 E-value=4.3e-08 Score=103.34 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
||||||+|.+|+++|++|++ |.+|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 79999999999999999999 999999999853
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.81 E-value=2.9e-08 Score=103.67 Aligned_cols=34 Identities=38% Similarity=0.747 Sum_probs=31.3
Q ss_pred CccEEEECCCcchHHHHHhhcC---CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (571)
.|||||||||.+|+++|++|++ |.+|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4899999999999999999997 789999999864
No 84
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.80 E-value=2.3e-08 Score=96.24 Aligned_cols=39 Identities=36% Similarity=0.439 Sum_probs=35.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
+....|+||||+|.-|+.+|++|++ |.++|+||+=+...
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 4678999999999999999999999 99999999987653
No 85
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.78 E-value=2.6e-08 Score=105.00 Aligned_cols=36 Identities=44% Similarity=0.719 Sum_probs=33.7
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+.|||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 47999999999999999999999 9999999999754
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.75 E-value=2.1e-07 Score=98.47 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC---CCeEEEEecC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERG 77 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G 77 (571)
++.+||||||||++|+++|+.|++ +.+|+||||-
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 568899999999999999999998 6999999993
No 87
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.71 E-value=2.8e-07 Score=88.53 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=33.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
..++||||||+|.+|+++|.+|++ |+||+|||+-+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 458999999999999999999999 999999998754
No 88
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.70 E-value=1e-07 Score=99.59 Aligned_cols=37 Identities=41% Similarity=0.701 Sum_probs=34.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
.+|||||||+|++|+++|+.|++ |.+|+|||++....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 47999999999999999999999 99999999998654
No 89
>PRK10015 oxidoreductase; Provisional
Probab=98.70 E-value=1.3e-07 Score=99.46 Aligned_cols=37 Identities=35% Similarity=0.621 Sum_probs=34.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.++|||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 357999999999999999999999 9999999999754
No 90
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.70 E-value=1e-08 Score=107.96 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=0.0
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
.+.+.|++|++++.|..++.+++ ++++|.+.++.| ..++ .++.||-|+| ...|+-++|
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG---~g~l~~~aG 156 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATG---DGDLAALAG 156 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-cccc-----cccccccccc---ccccccccc
Confidence 44668999999999999999876 999999987666 5555 4899999999 357888887
No 91
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.69 E-value=6.7e-07 Score=94.82 Aligned_cols=63 Identities=19% Similarity=0.402 Sum_probs=46.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+++.|++++++++|++|+++.++ +.++|+||++.. +|+..++.+ .+++.||+++|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcCcc
Confidence 344667889999999999999986221 234999999974 444444433 278999999998743
No 92
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.69 E-value=7.2e-08 Score=99.72 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=31.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
|||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999853
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.67 E-value=1.5e-07 Score=100.64 Aligned_cols=35 Identities=40% Similarity=0.669 Sum_probs=32.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..+|||||||||+||+.+|..|++ |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 457999999999999999999999 99999999874
No 94
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.66 E-value=1.3e-07 Score=105.28 Aligned_cols=34 Identities=41% Similarity=0.526 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
++||||||||++|+++|+.|++ |.+|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5899999999999999999999 999999999853
No 95
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.64 E-value=7.7e-08 Score=94.11 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=44.1
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
++..+|+++..+ .|++|+.+++ .+.||.+.++.|++.+.. +..-|+|-|.+..=|
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR 211 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence 456789998766 5899888776 999999998888776664 889999999885533
No 96
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.61 E-value=2.7e-07 Score=98.74 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=35.2
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
..||+||||||.+|+++|..||+ |++|+||||.....+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 47999999999999999999999 999999999887665
No 97
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.58 E-value=9.4e-08 Score=97.38 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=55.5
Q ss_pred CCCceecHHH--hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcC
Q 008281 207 QNGQRHTAAD--LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 207 ~~g~r~~~~~--~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
.+|+...+.. .+. .|.+.|..+.-..+|.+++.++++ ++.|++++|. .|+++.|+ +|.||-|||-+
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpf- 286 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPF- 286 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCc-
Confidence 4666665543 122 355689999999999999998875 8999999873 68888886 89999999976
Q ss_pred cHHHHHhh
Q 008281 283 SPQLLMLS 290 (571)
Q Consensus 283 tp~LLl~S 290 (571)
|-.|+..-
T Consensus 287 sDsIr~Md 294 (680)
T KOG0042|consen 287 SDSIRKMD 294 (680)
T ss_pred cHHHHhhc
Confidence 44555443
No 98
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.58 E-value=3.5e-07 Score=85.75 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
+++|||+|++|+++|+.|.+ |.+|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 69999999999999999999 999999999953
No 99
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.55 E-value=4.7e-07 Score=94.51 Aligned_cols=31 Identities=52% Similarity=0.664 Sum_probs=28.9
Q ss_pred EEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 50 IIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 50 IIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
||||+|++|+++|..|++ |.+|+|||++...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 699999999999999999 9999999998654
No 100
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.54 E-value=2.2e-06 Score=87.20 Aligned_cols=64 Identities=30% Similarity=0.364 Sum_probs=48.5
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
++. ..+++|++|.++++|++|...++ ...-|.+.+. +|....+. ++-|+|.||+ ++=.||++||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-----g~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg 252 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGD-----GRWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG 252 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCC-----CCEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC
Confidence 444 33556999999999999998776 3345666553 45555664 8999999998 6788999998
No 101
>PRK06185 hypothetical protein; Provisional
Probab=98.51 E-value=7.2e-07 Score=93.71 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=34.0
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
++..+|||+|||+|++|+++|..|++ |.+|+|||+..
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34578999999999999999999999 99999999985
No 102
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.51 E-value=6.2e-07 Score=96.52 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=49.6
Q ss_pred EEcCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 204 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 204 ~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
.++.+|.......+...+++.|++|+++++|++|..+++ ++.+|.+. +|+. +. ++.||+|+|...+
T Consensus 222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~~-----ad~vV~a~~~~~~ 287 (493)
T TIGR02730 222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--IY-----AKRIVSNATRWDT 287 (493)
T ss_pred ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--EE-----cCEEEECCChHHH
Confidence 344555433333355566778999999999999998765 88888875 5543 32 6889999998666
Q ss_pred HHHHH
Q 008281 284 PQLLM 288 (571)
Q Consensus 284 p~LLl 288 (571)
-..|+
T Consensus 288 ~~~Ll 292 (493)
T TIGR02730 288 FGKLL 292 (493)
T ss_pred HHHhC
Confidence 54443
No 103
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.50 E-value=7.4e-07 Score=94.29 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=35.1
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
+....+|+|||+|++|+++|+.|.+ |.+|+|+|++...+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG 46 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG 46 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 3557899999999999999999999 99999999997654
No 104
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.49 E-value=1.9e-06 Score=89.87 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=34.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+.++||||||+|.+|+++|+.|++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 458999999999999999999999 9999999999753
No 105
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.48 E-value=1.8e-07 Score=88.17 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=34.7
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHh
Q 008281 217 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 289 (571)
Q Consensus 217 ~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~ 289 (571)
|+. .+++.+++++++++|+++..+++ + .-|.+ .++ .++. ++.||||+|.++.|+.+..
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCcccc
Confidence 444 55667888999999999999876 3 33444 355 2333 7999999999889987653
No 106
>PLN02985 squalene monooxygenase
Probab=98.48 E-value=4.9e-06 Score=89.42 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.8
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..+.+|||||||+|++|+++|..|++ |.+|+||||..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 33678999999999999999999999 99999999974
No 107
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.42 E-value=2e-06 Score=89.87 Aligned_cols=38 Identities=34% Similarity=0.464 Sum_probs=34.7
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
++...+||+|||+|++|+++|+.|++ |.+|+|||+...
T Consensus 2 ~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 2 SRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 34678999999999999999999999 999999999864
No 108
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.41 E-value=8.1e-07 Score=87.82 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=47.8
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe----CCCceeE-E--eeecCCCeeEEEecCCcCc--HHH
Q 008281 217 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD----ATGAKHR-A--YLKNGPKNEIIVSAGALGS--PQL 286 (571)
Q Consensus 217 ~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~----~~g~~~~-~--~~~~~a~~~VVLaAGai~t--p~L 286 (571)
+|. .|+..|++|+++.-+..|++++++ .|.||-+.| ++|.... + -+.+ -++..|+|-|.-++ -++
T Consensus 188 wLg~kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~-hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 188 WLGEKAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEF-HAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCcccccccccee-cceeEEEeccccchhHHHH
Confidence 443 778899999999999999999886 999998876 3443111 0 0011 27889999887665 355
Q ss_pred HHhh
Q 008281 287 LMLS 290 (571)
Q Consensus 287 Ll~S 290 (571)
+.+=
T Consensus 263 ~kkf 266 (621)
T KOG2415|consen 263 IKKF 266 (621)
T ss_pred HHHh
Confidence 5443
No 109
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.41 E-value=1.5e-06 Score=83.23 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=41.9
Q ss_pred CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 225 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 225 g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
-++|.++++|++|+.+++ +++||++.|.+|+...+. ...||+|+|++.-
T Consensus 159 ~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCc
Confidence 479999999999996555 999999999888765553 7899999999986
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.38 E-value=3.4e-06 Score=88.82 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=34.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
..+|||+|||+|++|+++|..|++ |.+|+|||+....
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 457999999999999999999999 9999999999753
No 111
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.38 E-value=1.2e-06 Score=89.09 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=35.9
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcC
Q 008281 221 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 221 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
...+|++|+ +.+|+.|..+++ ++.||... +|.. +. ++.||||+|.+.
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl 152 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFL 152 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGB
T ss_pred hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEeccccc
Confidence 456899996 679999999887 99999885 6653 32 799999999953
No 112
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.34 E-value=6.8e-06 Score=82.97 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=110.5
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC------CCeEEEEecCCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCccc
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ------NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVI 115 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~------g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (571)
.+...||+||||+|++|+.+|++|+. .++|+++|.|.......-- .... .+..+..-. .
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~----~~~~----------~~~~c~~~~-~ 78 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCP----KDEK----------KLEKCPKCD-P 78 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhcc----cccc----------chhhcCCCC-C
Confidence 34678999999999999999999995 3699999999865321100 0000 000000000 0
Q ss_pred ccCcceecccccccCceec-CCCh-hhhcc--CCCC--hh---hhhhhhhhhhcccccCCCCchhHHHHHH-HHHHcC--
Q 008281 116 NSRARVLGGGSCLNAGFYT-RAAP-YYVRE--VGWD--ER---LVNESYQWVEKVVAFEPPMRQWQSAVRD-GLVEVG-- 183 (571)
Q Consensus 116 ~~~g~~lGG~s~~n~~~~~-r~~~-~~~~~--~gw~--~~---~l~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~g-- 183 (571)
.+--.++||++.+..+... |+.. .+++. .+|. |+ .....+.+....- .....+....+.+ .+.++|
T Consensus 79 ~~I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g--~~~~~~~~e~ikd~e~~aa~a~ 156 (486)
T COG2509 79 CPIVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPG--AGTFSDLTEQIKDIEFRAAGAG 156 (486)
T ss_pred ceeEecccccccccccceecccccccchhhhhCChHHHHHHHhccchhheecCCCc--CcccCCchhhhhHHHHHHhCCC
Confidence 1122477888888877765 2221 11111 1222 11 0111111111100 0000111122221 122223
Q ss_pred CCCCCCCccCCCCceeeeeEEEcCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeE
Q 008281 184 VLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 263 (571)
Q Consensus 184 ~~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~ 263 (571)
.+... ......| .+..+....++.......|++++++++|+.|++.++ .+.+|... +|..
T Consensus 157 ~eil~------~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~-- 216 (486)
T COG2509 157 EEILP------IYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE-- 216 (486)
T ss_pred ceeee------ccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--
Confidence 22110 0000111 112222223344456778999999999999999887 67777765 5644
Q ss_pred EeeecCCCeeEEEecCCcCcHHHHHhhcCCCCcc
Q 008281 264 AYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITV 297 (571)
Q Consensus 264 ~~~~~~a~~~VVLaAGai~tp~LLl~Sg~~gi~~ 297 (571)
+ .++.||||-|--+.-.+-++..+.|+.+
T Consensus 217 i-----~~~~vvlA~Grsg~dw~~~l~~K~Gv~~ 245 (486)
T COG2509 217 I-----EADYVVLAPGRSGRDWFEMLHKKLGVKM 245 (486)
T ss_pred E-----ecCEEEEccCcchHHHHHHHHHhcCccc
Confidence 3 3799999999876666666665555543
No 113
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.33 E-value=1e-06 Score=95.25 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=48.0
Q ss_pred EcCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcH
Q 008281 205 FDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 284 (571)
Q Consensus 205 ~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp 284 (571)
++..|.......+...+++.|++|++++.|++|..+++ ++++|++. +|+. + .++.||+|++...+-
T Consensus 213 ~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 213 FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHTY 278 (502)
T ss_pred EcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHH
Confidence 34445432223344556677999999999999998765 88888775 5543 3 268899998876666
Q ss_pred HHHH
Q 008281 285 QLLM 288 (571)
Q Consensus 285 ~LLl 288 (571)
..|+
T Consensus 279 ~~l~ 282 (502)
T TIGR02734 279 RRLL 282 (502)
T ss_pred HHhc
Confidence 5554
No 114
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.30 E-value=1.2e-05 Score=82.64 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=46.5
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
.+++.|++++.+++|+++..+++ ++++|.+. ++...++. ++.||||+|++-|..|+...+
T Consensus 272 ~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l~-----AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 272 RFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPLR-----ADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceEE-----CCEEEEccCCCcCHHHHhhcC
Confidence 44567999999999999998876 88887764 33223343 788999999988998877665
No 115
>PRK06126 hypothetical protein; Provisional
Probab=98.29 E-value=1.9e-05 Score=86.31 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=33.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
..++||+|||+|++|+++|..|++ |.+|+|+||...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 567999999999999999999999 999999998753
No 116
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.29 E-value=8.9e-06 Score=85.74 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=36.3
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCe-EEEEecCCCCCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSPYG 82 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~~~~~ 82 (571)
+..+.+||+|||+|.+|+++|++|.+ |.. ++||||.....+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 44678999999999999999999999 877 999999986543
No 117
>PRK06847 hypothetical protein; Provisional
Probab=98.22 E-value=8.3e-06 Score=84.65 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+..||+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 456899999999999999999999 999999999754
No 118
>PRK07208 hypothetical protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=86.77 Aligned_cols=40 Identities=30% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
|++..||||||||++|+++|++|++ |.+|+|||+.+...+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3567899999999999999999999 999999999876654
No 119
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.21 E-value=7.8e-06 Score=82.03 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=50.8
Q ss_pred cCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 206 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 206 ~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
+.+|...-+..+.+.+++.|.+|.+++.|.+|+.|.+ +|.||.+. +|++.+ +|.||-.|+-+.|=.
T Consensus 259 p~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~ev~-------sk~VvSNAt~~~Tf~ 324 (561)
T KOG4254|consen 259 PRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTEVR-------SKIVVSNATPWDTFE 324 (561)
T ss_pred CCCChhHHHHHHHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcEEE-------eeeeecCCchHHHHH
Confidence 3444333333455677889999999999999999986 99999997 686533 577887888776663
Q ss_pred HHH
Q 008281 286 LLM 288 (571)
Q Consensus 286 LLl 288 (571)
-|+
T Consensus 325 kLl 327 (561)
T KOG4254|consen 325 KLL 327 (561)
T ss_pred HhC
Confidence 343
No 120
>PLN02697 lycopene epsilon cyclase
Probab=98.21 E-value=7.5e-06 Score=87.62 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=31.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
...|||||||+|++|+++|..|++ |.+|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 347999999999999999999999 9999999986
No 121
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.18 E-value=2.8e-05 Score=81.63 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+|||+|||+|++|+++|..|++ |.+|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999985
No 122
>PRK06834 hypothetical protein; Provisional
Probab=98.18 E-value=2e-05 Score=84.45 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++||||||+|++|+++|..|++ |.+|+|||+...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999999999999999999 999999999863
No 123
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.16 E-value=8.3e-06 Score=85.46 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=52.2
Q ss_pred eeEEEcCCCceecHHH---hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEe
Q 008281 201 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVS 277 (571)
Q Consensus 201 g~~~~~~~g~r~~~~~---~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLa 277 (571)
++.+.+.+|.--+... +...|++.|+.|+.+|.|++|....+ +..||++. .|.+ .+..||=|
T Consensus 174 g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~i--------et~~~VNa 238 (856)
T KOG2844|consen 174 GGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSI--------ETECVVNA 238 (856)
T ss_pred eeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Ccce--------ecceEEec
Confidence 3445567776555543 44477889999999999999999877 44588875 6754 25779999
Q ss_pred cCCcCcHHHHHhhc
Q 008281 278 AGALGSPQLLMLSG 291 (571)
Q Consensus 278 AGai~tp~LLl~Sg 291 (571)
||- +.-..--++|
T Consensus 239 aGv-WAr~Vg~m~g 251 (856)
T KOG2844|consen 239 AGV-WAREVGAMAG 251 (856)
T ss_pred hhH-HHHHhhhhcC
Confidence 994 4444444455
No 124
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.15 E-value=4.8e-05 Score=73.74 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCccEEEECCCcchHHHHHhhcC-----CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~~ 81 (571)
..+||+|||+|..|+++|+-|.| |.+|+|+|+.+-..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 47899999999999999999876 68999999987553
No 125
>PRK08244 hypothetical protein; Provisional
Probab=98.14 E-value=2.1e-05 Score=84.84 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
+|||+|||+|++|+++|..|++ |.+|+||||...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999 999999999864
No 126
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.14 E-value=1e-05 Score=88.17 Aligned_cols=37 Identities=38% Similarity=0.500 Sum_probs=33.9
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
..++||+|||+|++|+++|..|++ |.+|+||||....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 467999999999999999999999 9999999998643
No 127
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.12 E-value=2.2e-05 Score=81.76 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=31.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
||||||+|++|+++|..|++ |.+|+|+||....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999764
No 128
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.12 E-value=4.5e-05 Score=79.41 Aligned_cols=33 Identities=39% Similarity=0.660 Sum_probs=31.1
Q ss_pred cEEEECCCcchHHHHHhhcC-C-CeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~ 80 (571)
||||||+|++|+++|..|++ | .+|+|+|+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999999653
No 129
>PRK06184 hypothetical protein; Provisional
Probab=98.09 E-value=2.4e-05 Score=84.46 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=32.7
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
+++||+|||+|++|+++|..|++ |.+|+||||...
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46999999999999999999999 999999999864
No 130
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.08 E-value=4.2e-05 Score=83.49 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 344556789999999999999986543 999999865 466655554 7899999999874
No 131
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.08 E-value=1.6e-05 Score=83.30 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.4
Q ss_pred CccEEEECCCcchHHHHHhhcC-C--CeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (571)
.|||||||+|++|+++|..|++ | .+|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 3899999999999999999999 6 89999999864
No 132
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.06 E-value=6.9e-06 Score=88.24 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
.|+|||+|++|+++|+.|.| |..|+++||.+..++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 48999999999999999999 999999999987653
No 133
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.03 E-value=2.6e-05 Score=83.59 Aligned_cols=32 Identities=44% Similarity=0.728 Sum_probs=30.6
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
|||||||+|.+|+.+|..+++ |.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999974
No 134
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.01 E-value=3.7e-05 Score=83.19 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
...||++|||||++|+.+|.+|++ |++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999975
No 135
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.00 E-value=4.6e-06 Score=63.11 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.2
Q ss_pred EECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 51 IIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 51 IVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
|||+|++|+++|++|++ |.+|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999 99999999998754
No 136
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=7.7e-06 Score=78.79 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=34.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 83 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (571)
.||+||||||.+|+++|..|++ |++||||||-...+++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 3899999999999999999999 9999999998877653
No 137
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=3.8e-05 Score=80.06 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=33.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
..-+++|||+|++|+++|+.|.+ |..|+++||.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG 42 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc
Confidence 35689999999999999999999 99999999998654
No 138
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.93 E-value=6.2e-05 Score=72.27 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=35.0
Q ss_pred cCCCCCCccEEEECCCcchHHHHHhhcC---CCeEEEEecCCCC
Q 008281 40 AAQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 80 (571)
Q Consensus 40 ~~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~ 80 (571)
+.-....||.||||+|..|++.|++|.- +.+|+|||+-...
T Consensus 42 ~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 42 ESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 3344679999999999999999999875 8999999998643
No 139
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.91 E-value=7.5e-05 Score=77.84 Aligned_cols=32 Identities=44% Similarity=0.649 Sum_probs=31.1
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
.+||+|||+|++|+++|..|++ |.+|+|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 6899999999999999999999 9999999998
No 140
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.91 E-value=9e-06 Score=85.98 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+...+|||||||+|++|+++|..|++ |.+|+|||+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 33568999999999999999999999 99999999974
No 141
>PRK07236 hypothetical protein; Provisional
Probab=97.89 E-value=0.00022 Score=74.38 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+..+||||||||++|+++|..|++ |.+|+|+|+..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 346899999999999999999999 99999999885
No 142
>PRK11445 putative oxidoreductase; Provisional
Probab=97.88 E-value=0.00014 Score=74.61 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhcCCCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~ 79 (571)
|||+|||+|++|+++|..|++..+|+|||+...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 899999999999999999998789999999864
No 143
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.88 E-value=6.2e-05 Score=81.41 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=30.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
...||++|||||++|+.+|.+|++ |.+|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999964
No 144
>PTZ00058 glutathione reductase; Provisional
Probab=97.87 E-value=2.1e-05 Score=85.19 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..+||+||||+|++|..+|.+|++ |++|+|||++.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 358999999999999999999999 99999999874
No 145
>PRK06370 mercuric reductase; Validated
Probab=97.86 E-value=1.3e-05 Score=85.61 Aligned_cols=38 Identities=47% Similarity=0.683 Sum_probs=34.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
|+.+||+||||+|++|..+|.+|++ |++|+|+|++...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G 40 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLG 40 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccC
Confidence 4678999999999999999999999 9999999997543
No 146
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.84 E-value=1e-05 Score=84.43 Aligned_cols=31 Identities=45% Similarity=0.813 Sum_probs=30.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
|||||||+|++|+++|+.|++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 147
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.81 E-value=1.3e-05 Score=85.03 Aligned_cols=34 Identities=38% Similarity=0.690 Sum_probs=31.9
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
++||+||||+|++|..+|.+|++ |.||+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 46999999999999999999999 99999999864
No 148
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.81 E-value=1.8e-05 Score=82.58 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=34.6
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
|+++.|||||||+|++|+++|..|++ |.+|+|||+...
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 44678999999999999999999999 999999999854
No 149
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=1.7e-05 Score=84.75 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.+||+||||+|++|..+|.+|++ |++|+|+|+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 457999999999999999999999 99999999874
No 150
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.80 E-value=1.5e-05 Score=79.56 Aligned_cols=34 Identities=41% Similarity=0.726 Sum_probs=32.0
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
|||+|||+|++|+++|..|++ |.+|+|||+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 799999999999999999999 9999999999753
No 151
>PRK06116 glutathione reductase; Validated
Probab=97.80 E-value=1.5e-05 Score=84.89 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.+||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 457999999999999999999999 99999999974
No 152
>PRK07588 hypothetical protein; Provisional
Probab=97.80 E-value=5.7e-05 Score=78.89 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
||+|||||++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 79999999999999999999 999999999853
No 153
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.79 E-value=0.00026 Score=77.29 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCceeEEeeecCCCeeEEEecCCcCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 283 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~-~~g~~~~~~~~~~a~~~VVLaAGai~t 283 (571)
+...+.+.|++|+.++.|++|+.+++ +|+||...+ .+|....+. +|.||||+|+++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 44456678999999999999998754 999999865 356655554 7999999999865
No 154
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.77 E-value=1.9e-05 Score=82.48 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=33.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||||||+|++|+++|..|++ |.+|+|||+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 567999999999999999999999 99999999975
No 155
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.77 E-value=1.8e-05 Score=84.10 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=31.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+||+||||+|++|..+|.+|++ |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 6999999999999999999999 9999999985
No 156
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=9.7e-05 Score=76.44 Aligned_cols=35 Identities=40% Similarity=0.541 Sum_probs=31.3
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||||||+|-||+-+|...|+ |.+++||--.-
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 356999999999999999999999 99999996553
No 157
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.77 E-value=2.1e-05 Score=84.08 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=33.8
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+..||+||||+|++|+.+|.+|++ |++|+|+|++...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 567999999999999999999999 9999999997543
No 158
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.76 E-value=0.00022 Score=77.25 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=49.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
+...+.+.|++|+++++|++|..+++ ++++|++.+. +|+..++. ++.||+|||+ ++.+|+...|
T Consensus 134 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~~g 198 (516)
T TIGR03377 134 NVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVINAAGI-WAGRIAEYAG 198 (516)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCc-chHHHHHhcC
Confidence 34466778999999999999998765 8999998753 45444554 8999999996 6888876665
No 159
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=2e-05 Score=83.73 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
++||+||||||++|+.+|.+|++ |.+|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 46999999999999999999999 999999999753
No 160
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.74 E-value=1.9e-05 Score=80.94 Aligned_cols=35 Identities=37% Similarity=0.623 Sum_probs=30.7
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+|||||||+|++|+++|..|++ |.+|+|+||....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5899999999999999999999 9999999998654
No 161
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.74 E-value=2.4e-05 Score=81.89 Aligned_cols=35 Identities=37% Similarity=0.603 Sum_probs=33.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.+||+||||+|++|.++|.++++ |+||+|+|++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 468999999999999999999999 98899999995
No 162
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=2.1e-05 Score=84.20 Aligned_cols=36 Identities=36% Similarity=0.567 Sum_probs=33.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
|...||+||||||++|+.+|.+|++ |++|+|+|++.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 37 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3568999999999999999999999 99999999974
No 163
>PRK08013 oxidoreductase; Provisional
Probab=97.72 E-value=2.5e-05 Score=81.81 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
++|||||||+|++|+++|..|++ |.+|+|||+...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 36999999999999999999999 999999999875
No 164
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.71 E-value=0.00031 Score=81.68 Aligned_cols=64 Identities=23% Similarity=0.182 Sum_probs=47.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
++..+++.|++|++++.|+++.-+ + ++.+|++...+|...++. ++.|+++.|..-+..|+...|
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i~-----~D~V~va~G~~Pnt~L~~~lg 420 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRLE-----ADALAVSGGWTPVVHLFSQRG 420 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEEE-----CCEEEEcCCcCchhHHHHhcC
Confidence 344456779999999999999643 2 677888764334444553 799999999988888887666
No 165
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.70 E-value=2.8e-05 Score=82.51 Aligned_cols=34 Identities=44% Similarity=0.585 Sum_probs=32.3
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
++||+||||||++|+.+|.+|++ |.+|+|+|+++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 37999999999999999999999 99999999985
No 166
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.69 E-value=3.6e-05 Score=69.57 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=31.0
Q ss_pred CccEEEECCCcchHHHHHhhcC---CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~ 80 (571)
+-|+||||+|.+|+++||..++ +.||.+||..-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 5699999999999999999996 6899999987543
No 167
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.69 E-value=0.00019 Score=72.98 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=38.5
Q ss_pred Hhhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 216 DLLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 216 ~~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
.|+. .+++..-.+..+++|++|..+.++ ......|.+.+.+|....+. ++.||||+| .+|.
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~--~~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~ 160 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDG--DEDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPR 160 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEET--TEEEEEEEEEETTS-EEEEE-----ESEEEE------EE-
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCC--CccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCC
Confidence 4666 456666558899999999997752 11456677766667665654 799999999 5565
No 168
>PRK09126 hypothetical protein; Provisional
Probab=97.67 E-value=3e-05 Score=81.05 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=33.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+|||||||+|++|+++|..|++ |.+|+|+|+....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 6999999999999999999999 9999999999753
No 169
>PLN02546 glutathione reductase
Probab=97.66 E-value=3.9e-05 Score=83.06 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
..+||+||||+|++|..+|.+|++ |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 347999999999999999999999 999999996
No 170
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=3.5e-05 Score=82.30 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=30.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+||+||||+|++|+.+|.+|++ |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999 9999999973
No 171
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=3.6e-05 Score=82.33 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+||+||||+|++|+.+|.+|++ |++|+|+|++..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~ 38 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW 38 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46999999999999999999999 999999999743
No 172
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.65 E-value=2.9e-05 Score=81.12 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+||||||+|++|+++|..|++ |.+|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999864
No 173
>PRK07045 putative monooxygenase; Reviewed
Probab=97.65 E-value=3.4e-05 Score=80.48 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=34.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+..+||+|||+|++|+++|..|++ |.+|+|+|+....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 467999999999999999999999 9999999999753
No 174
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.64 E-value=4e-05 Score=78.51 Aligned_cols=36 Identities=44% Similarity=0.731 Sum_probs=32.8
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
||++|||||++|+++|.+|++ |.+|+|||+.....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999999 999999999765543
No 175
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.64 E-value=4e-05 Score=79.95 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=32.9
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.+||||||+|++|+++|..|++ |.+|+|||++...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 6899999999999999999999 9999999999753
No 176
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.62 E-value=0.00078 Score=65.90 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCccEEEECCCcchHHHHHhhcCCCeEEEEecCCCCCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPN 85 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~~~~~~~ 85 (571)
..-++.|||||.+|+++|+.|+.-.+|.|.|+++...+..+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence 34579999999999999999999999999999998776443
No 177
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=4.8e-05 Score=80.76 Aligned_cols=39 Identities=33% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
....+|||||||++|+++|+.|.+ |.+|+|||+-+..++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 567899999999999999999999 999999999887764
No 178
>PRK14694 putative mercuric reductase; Provisional
Probab=97.62 E-value=4.5e-05 Score=81.60 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=33.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
...+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3578999999999999999999999 99999999975
No 179
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.61 E-value=4e-05 Score=80.48 Aligned_cols=34 Identities=35% Similarity=0.573 Sum_probs=31.9
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+..|||+|||+|++|+++|..|++ |.+|+|||+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 347999999999999999999999 9999999996
No 180
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.61 E-value=4.2e-05 Score=79.70 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.3
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+|||+|||+|++|+++|..|++ |.+|+|+|+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 5899999999999999999999 99999999874
No 181
>PRK05868 hypothetical protein; Validated
Probab=97.58 E-value=0.00088 Score=69.39 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 79999999999999999999 999999999854
No 182
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.58 E-value=5.1e-05 Score=81.09 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+||+||||||++|+.+|.+|++ |++|+|||++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 46999999999999999999999 99999999943
No 183
>PRK07190 hypothetical protein; Provisional
Probab=97.57 E-value=5.2e-05 Score=81.21 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+..+||||||+|++|+++|..|++ |.+|+||||....
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 457999999999999999999999 9999999998643
No 184
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.57 E-value=0.00028 Score=75.38 Aligned_cols=31 Identities=42% Similarity=0.685 Sum_probs=29.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
|+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999863
No 185
>PLN02463 lycopene beta cyclase
Probab=97.57 E-value=4.8e-05 Score=80.14 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
...|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 457999999999999999999999 99999999864
No 186
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=4.8e-05 Score=75.64 Aligned_cols=34 Identities=47% Similarity=0.707 Sum_probs=30.3
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCe-EEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~ 78 (571)
+.||+||||||++|+++|.++++ +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 57999999999999999999999 988 77777764
No 187
>PLN02507 glutathione reductase
Probab=97.56 E-value=4.7e-05 Score=81.84 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
..+||+||||+|++|..+|.+|++ |+||+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 457999999999999999999999 999999996
No 188
>PRK09897 hypothetical protein; Provisional
Probab=97.56 E-value=0.0006 Score=73.23 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.7
Q ss_pred ccEEEECCCcchHHHHHhhcC---CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~ 80 (571)
++++|||+|++|+.+|.+|.+ ..+|+|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 479999999999999999987 3699999997643
No 189
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.56 E-value=5.3e-05 Score=82.59 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=33.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
...|||||||||+||+.+|.+|++ |.+|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 456999999999999999999999 999999999753
No 190
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.55 E-value=5.3e-05 Score=80.98 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=32.4
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 57999999999999999999999 99999999976
No 191
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.54 E-value=0.0027 Score=65.84 Aligned_cols=58 Identities=21% Similarity=0.455 Sum_probs=45.8
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCc
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 281 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai 281 (571)
.++..|+.+..+++|+.|.++.++ +..+|+++++. .+|+..++.+. ..+.|++..|++
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~-~~g~~~~i~l~--~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIE-QDGKEETIDLG--PDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEE-cCCCeeEEEeC--CCCEEEEECCcc
Confidence 556789999999999999997654 34578888887 47776666543 789999999975
No 192
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.54 E-value=6.3e-05 Score=77.92 Aligned_cols=33 Identities=45% Similarity=0.717 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhh--cC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATL--SQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~L--a~-g~~VlvlE~G~~~ 80 (571)
||||||+|+||+++|.+| ++ |.+|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 66 9999999998654
No 193
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.53 E-value=6.5e-05 Score=82.61 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.9
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+||+||||+|++|..+|.++++ |+||+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7999999999999999999999 9999999975
No 194
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.53 E-value=7e-05 Score=80.06 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=30.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+||+||||||++|+.+|.+|++ |.+|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4999999999999999999999 9999999993
No 195
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.52 E-value=8.2e-05 Score=79.54 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=31.0
Q ss_pred CCccEEEECCCcchHHHHHhhcC--CCeEEEEecC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G 77 (571)
.+||+||||+|++|..+|.++++ |+||+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 47999999999999999999999 6999999985
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.52 E-value=6.3e-05 Score=80.59 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=31.4
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
..+||+||||+|++|+.+|.+|++ |++|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 357999999999999999999999 999999998
No 197
>PLN02676 polyamine oxidase
Probab=97.52 E-value=0.00012 Score=78.23 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=34.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~~~~ 82 (571)
...+||||||+|++|+++|++|++ |. +|+|||+.+...+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 347899999999999999999999 97 6999999887654
No 198
>PRK13748 putative mercuric reductase; Provisional
Probab=97.51 E-value=7.3e-05 Score=82.02 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 57999999999999999999999 99999999974
No 199
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.48 E-value=8e-05 Score=77.70 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
||||||+|++|+++|+.|++ |.+|+|||+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999854
No 200
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.48 E-value=7.6e-05 Score=79.78 Aligned_cols=33 Identities=42% Similarity=0.660 Sum_probs=31.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
||+||||||++|..+|.+|++ |++|+|+|++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 799999999999999999999 999999999753
No 201
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.47 E-value=7.9e-05 Score=74.60 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
||+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999885
No 202
>PTZ00367 squalene epoxidase; Provisional
Probab=97.47 E-value=0.00017 Score=78.28 Aligned_cols=35 Identities=49% Similarity=0.620 Sum_probs=32.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.+|||||||+|++|+++|..|++ |.+|+||||..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 457999999999999999999999 99999999975
No 203
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.46 E-value=8.6e-05 Score=79.86 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=31.0
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
..||+||||+|++|+.+|.+|++ |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 36999999999999999999999 9999999974
No 204
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.45 E-value=9.5e-05 Score=79.70 Aligned_cols=37 Identities=38% Similarity=0.517 Sum_probs=33.8
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
+-||||||||.+|+++|..|++ |++|+|||+.....+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 3589999999999999999999 999999999987654
No 205
>PRK06996 hypothetical protein; Provisional
Probab=97.43 E-value=0.00011 Score=76.79 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=33.4
Q ss_pred CCCCCccEEEECCCcchHHHHHhhcC-C----CeEEEEecCCC
Q 008281 42 QPVSYYDYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGGS 79 (571)
Q Consensus 42 ~~~~~~DvIIVGsG~aG~~~A~~La~-g----~~VlvlE~G~~ 79 (571)
+...+|||+|||+|++|+++|..|++ | ++|+|+|+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 44678999999999999999999998 7 47999999753
No 206
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.39 E-value=0.00024 Score=75.25 Aligned_cols=33 Identities=48% Similarity=0.712 Sum_probs=27.1
Q ss_pred cEEEECCCcchHHHHHhhcC-C---CeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g---~~VlvlE~G~~~ 80 (571)
||||||+|++|..+|..|++ + .+|+|||+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 79999999999999999999 6 899999998754
No 207
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.38 E-value=0.00012 Score=76.00 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+||+|||+|++|+++|..|++ |.+|+|+|+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999 99999999975
No 208
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.37 E-value=0.00061 Score=64.84 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-C------CeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g------~~VlvlE~G~~~ 80 (571)
...-.++|||+|..|..+|+.|++ + ..|.|+|.....
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 345679999999999999999999 5 589999987654
No 209
>PRK14727 putative mercuric reductase; Provisional
Probab=97.37 E-value=0.00018 Score=77.12 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=33.0
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
..||+||||+|++|..+|.+|++ |.+|+|+|++...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 47999999999999999999999 9999999998543
No 210
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.36 E-value=0.00014 Score=75.96 Aligned_cols=34 Identities=47% Similarity=0.629 Sum_probs=31.1
Q ss_pred CCccEEEECCCcchHHHHHhhcC----CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~----g~~VlvlE~G~ 78 (571)
..+||+|||+|++|+++|..|++ |.+|+||||-.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 46999999999999999999976 89999999963
No 211
>PLN02568 polyamine oxidase
Probab=97.35 E-value=0.00018 Score=77.79 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=35.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-C-----CeEEEEecCCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGSPYG 82 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g-----~~VlvlE~G~~~~~ 82 (571)
+++.+||||||+|++|+++|++|++ | .+|+|||+.....+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 3556899999999999999999998 7 89999999887654
No 212
>PLN02268 probable polyamine oxidase
Probab=97.35 E-value=0.00016 Score=76.76 Aligned_cols=37 Identities=38% Similarity=0.470 Sum_probs=33.7
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 83 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (571)
.+|||||+|.+|+++|++|.+ |.+|+|||+.+...+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 379999999999999999999 9999999999877653
No 213
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.34 E-value=0.00014 Score=75.97 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+||+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4899999999999999999999 999999999864
No 214
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.34 E-value=0.00014 Score=76.00 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+||+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5899999999999999999999 999999999864
No 215
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.33 E-value=0.00016 Score=75.60 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=32.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
...||+|||+|++|+++|..|++ |.+|+|+||...
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999 999999999864
No 216
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.30 E-value=0.00026 Score=77.41 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
..++||+|||+|++|+++|..|++ |.+|+|||+...
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 367899999999999999999999 999999999864
No 217
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.29 E-value=0.00017 Score=76.43 Aligned_cols=32 Identities=44% Similarity=0.773 Sum_probs=30.0
Q ss_pred ccEEEECCCcchHHHHHhhcC-----CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~ 78 (571)
|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 89999999964
No 218
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00026 Score=72.12 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=35.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
....||||||+|.+|+++|++|.+ |++|+|||+-+...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 568999999999999999999999 999999999876553
No 219
>PRK10262 thioredoxin reductase; Provisional
Probab=97.27 E-value=0.00022 Score=72.36 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=32.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.+.+||+|||+|++|+.+|..|++ |.+|+++|+..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 3578999999999999999999999 99999999653
No 220
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.25 E-value=0.00021 Score=76.11 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=31.6
Q ss_pred cEEEECCCcchHHHHHhhcC-C--CeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (571)
+|||||||++|+++|++|++ | .+|+|||+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 59999999999999999999 7 89999999876654
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=97.25 E-value=0.00028 Score=76.25 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=34.9
Q ss_pred CCCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~~ 82 (571)
...+||||||||.+|+++|++|++ |.+|+|||+.+...+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 456899999999999999999998 799999999887654
No 222
>PRK07233 hypothetical protein; Provisional
Probab=97.24 E-value=0.00023 Score=75.40 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=33.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 83 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (571)
+|||||||.+|+++|+.|++ |.+|+|||+.....+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 58999999999999999999 9999999999877653
No 223
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.23 E-value=0.0033 Score=64.39 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCceeeeeEEEcCCCceecHHH-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEE
Q 008281 173 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHG 251 (571)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~g 251 (571)
..+.+.+++.|++.. ....+.++|...+.++... ++..+++.|++|+++++|+.| +++ + ..
T Consensus 57 ~d~~~fF~~~Gi~~~----------~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~~ 118 (376)
T TIGR03862 57 VALQDWARGLGIETF----------VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-LR 118 (376)
T ss_pred HHHHHHHHHCCCceE----------ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-EE
Confidence 446677778887421 1112345554444444444 555778899999999999999 322 2 34
Q ss_pred EEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHH
Q 008281 252 VVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 286 (571)
Q Consensus 252 V~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~L 286 (571)
|.+. .+.. .+ .++.||||+|+...|++
T Consensus 119 v~~~--~~~~-~~-----~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 119 FETP--DGQS-TI-----EADAVVLALGGASWSQL 145 (376)
T ss_pred EEEC--CCce-EE-----ecCEEEEcCCCcccccc
Confidence 5443 2221 23 38999999999887764
No 224
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.22 E-value=0.00021 Score=74.43 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+||+||||+|.+|+++|..|++ |.+|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5999999999999999999999 99999999984
No 225
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.19 E-value=0.0025 Score=67.53 Aligned_cols=32 Identities=16% Similarity=0.494 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhcC---CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (571)
.|||||+|++|+.+|.+|.+ +.+|+|+|+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 59999999999999999987 579999999864
No 226
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.17 E-value=0.00034 Score=72.25 Aligned_cols=32 Identities=38% Similarity=0.660 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhhcC---CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (571)
||||||+|++|+.+|.+|++ |.+|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 89999999999999999987 899999999864
No 227
>PRK06753 hypothetical protein; Provisional
Probab=97.16 E-value=0.00027 Score=73.27 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=31.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
||||||||++|+++|..|++ |.+|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 79999999999999999999 9999999999753
No 228
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.13 E-value=0.00042 Score=73.73 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=27.6
Q ss_pred CccEEEECCCcchHHHHHhhcCCCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~ 78 (571)
+||+||||+|++|..+|.+++ |+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHC-CCeEEEEeCCC
Confidence 699999999999998876543 99999999863
No 229
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.12 E-value=0.00044 Score=76.48 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=33.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 79 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~ 79 (571)
+.+++||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4568999999999999999999998 899999998753
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.11 E-value=0.00033 Score=75.06 Aligned_cols=32 Identities=41% Similarity=0.655 Sum_probs=30.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+||+||||+|++|..+|.+|++ |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999999999999999999 9999999974
No 231
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.00094 Score=67.83 Aligned_cols=34 Identities=47% Similarity=0.809 Sum_probs=31.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
...|||||||+|-|||-+|...|+ |.+.+||-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 679999999999999999999999 9999998654
No 232
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.08 E-value=0.00035 Score=65.38 Aligned_cols=31 Identities=45% Similarity=0.753 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
|+||||||++|+.+|.+|++ +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999 99999997764
No 233
>PRK07846 mycothione reductase; Reviewed
Probab=97.06 E-value=0.00051 Score=73.04 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=28.7
Q ss_pred CccEEEECCCcchHHHHHhhcCCCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~g~~VlvlE~G~~ 79 (571)
+||+||||+|++|..+|.+++ |+||+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~~-G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERFA-DKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 499999999999999887743 999999998753
No 234
>PRK07538 hypothetical protein; Provisional
Probab=97.06 E-value=0.00038 Score=73.23 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
||+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 89999999999999999999 999999999753
No 235
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00045 Score=71.72 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=32.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
-|+|+|+|.||+++|++|++ |.+|.|+|+++..++
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 38999999999999999999 999999999988765
No 236
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.99 E-value=0.0018 Score=65.91 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=39.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
++..+.+.|++++.+++|+.|..+++ ++++|... +| ++. ++.||+|+|+ ++++
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~~-----a~~vV~a~G~-~~~~ 195 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DVQ-----ADQVVLAAGA-WAGE 195 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EEE-----CCEEEEcCCh-hhhh
Confidence 44566778999999999999997655 77777653 44 233 7899999997 4444
No 237
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.98 E-value=0.00054 Score=70.59 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=31.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
-||+|||||.+|+.+|..|++ |.+|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 489999999999999999999 9999999987643
No 238
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.00059 Score=66.21 Aligned_cols=35 Identities=37% Similarity=0.599 Sum_probs=33.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+|||+|||+|.+|+++|.+|++ |+++.|+-+|...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 6999999999999999999999 9999999999753
No 239
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.95 E-value=0.00064 Score=72.68 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=32.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-----CCeEEEEecCCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYG 82 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~~~ 82 (571)
..|+||||||++|+++|++|++ |.+|+|+|+.+...+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 3689999999999999999997 589999999876654
No 240
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.89 E-value=0.0038 Score=64.95 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=36.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 286 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~L 286 (571)
+...+.+ |+++++++.|+.|..+++ + +.+...+|.. + .++.||+|+|+ +++.|
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~-----~---~~v~t~~g~~--~-----~a~~vV~a~G~-~~~~l 193 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGE-----G---WQLLDANGEV--I-----AASVVVLANGA-QAGQL 193 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCC-----e---EEEEeCCCCE--E-----EcCEEEEcCCc-ccccc
Confidence 3445667 999999999999987654 3 3333335542 3 27999999996 44443
No 241
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.86 E-value=0.00081 Score=73.68 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.++|+|||||++|+++|..|++ |.+|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 457899999999999999999999 99999999964
No 242
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.85 E-value=0.0011 Score=75.92 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
..+||+|||||+||+++|+.|++ |.+|+|+|+.....
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 46899999999999999999999 99999999986543
No 243
>PLN02529 lysine-specific histone demethylase 1
Probab=96.85 E-value=0.0011 Score=73.67 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=35.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
....||||||+|++|+.+|..|++ |.+|+|||+.....+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 457899999999999999999999 999999999876554
No 244
>PRK12831 putative oxidoreductase; Provisional
Probab=96.84 E-value=0.0012 Score=70.29 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
....||+|||+|++|+.+|.+|++ |.+|+|+|+....
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 457899999999999999999999 9999999987643
No 245
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.83 E-value=0.00083 Score=71.86 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=31.1
Q ss_pred cEEEECCCcchHHHHHhhcC-C------CeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g------~~VlvlE~G~~~~~ 82 (571)
+|||||||.+|+++|++|++ | .+|+|||+.+...+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 59999999999999999997 4 68999999877654
No 246
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.83 E-value=0.00089 Score=71.39 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
+|+|||+|++|+++|++|++ |.+|+|||+.+...+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999876554
No 247
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.72 E-value=0.00098 Score=69.32 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=32.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNP 84 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~ 84 (571)
|+++|||||+|.|..-+++|..|+. |+|||.|++.+.+++..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 4679999999999999999999999 99999999999887643
No 248
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.72 E-value=0.0013 Score=66.32 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+-+|||||||.+|++.|..|++ |.+|+|+|+-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4579999999999999999999 99999999954
No 249
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0015 Score=63.64 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..+||.||||+|.+|+++|.+.+. |.||.+|+-=.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 568999999999999999999999 99999998654
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.71 E-value=0.0014 Score=69.94 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
++||||+|++|..+|.+|++ |++|+|+|++...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 69999999999999999999 9999999998654
No 251
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.65 E-value=0.0019 Score=63.98 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=33.0
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.+||+||||+|++|-++|.+.++ |+|...+|+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 68999999999999999999999 9999999995443
No 252
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.65 E-value=0.0019 Score=50.56 Aligned_cols=32 Identities=38% Similarity=0.626 Sum_probs=30.3
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
++|||+|..|+-+|..|++ |.+|.|||+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 7999999999999999999 9999999999764
No 253
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.65 E-value=0.0014 Score=68.74 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
+|+|||||++|+++|..|++ |.+|.|+|+.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 69999999999999999999 999999999753
No 254
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.64 E-value=0.0019 Score=68.64 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...+|++|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457899999999999999999999 9999999997643
No 255
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.60 E-value=0.0022 Score=68.64 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...+||+|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 456799999999999999999999 9999999998654
No 256
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.60 E-value=0.0015 Score=67.74 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=30.5
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.||+|||+|.+|+.+|..|++ |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 379999999999999999999 999999998754
No 257
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.60 E-value=0.002 Score=64.56 Aligned_cols=36 Identities=47% Similarity=0.817 Sum_probs=32.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-----CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~ 79 (571)
...|||||||||+.|.++|..|.. .+||+|+|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 348999999999999999999987 479999999964
No 258
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.58 E-value=0.002 Score=71.94 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=35.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
....+|||||+|++|+.+|+.|++ |.+|+|+|+.....+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 457899999999999999999999 999999999876654
No 259
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.53 E-value=0.056 Score=48.34 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEECCCcchHHHHHhhcC-C-----CeEEEEecCCC
Q 008281 50 IIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGS 79 (571)
Q Consensus 50 IIVGsG~aG~~~A~~La~-g-----~~VlvlE~G~~ 79 (571)
+|||+|++|+.++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 499999999999999977 3 58999999543
No 260
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.52 E-value=0.002 Score=67.16 Aligned_cols=34 Identities=38% Similarity=0.498 Sum_probs=31.2
Q ss_pred EEEECCCcchHHHHHhhcC-C--CeEEEEecCCCCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 82 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (571)
++|||||.+|+.+|++|.+ + ..|.|+|+++...+
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 8999999999999999999 7 89999999976654
No 261
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.48 E-value=0.0019 Score=65.97 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=33.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
.-+++|||+|++|+.+|..|++ |.+|.|+|+-+...+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 4579999999999999999999 999999999987654
No 262
>PLN02612 phytoene desaturase
Probab=96.45 E-value=0.0029 Score=69.22 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
...||+|||+|.+|+++|++|++ |.+|+|+|+.....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 45799999999999999999999 99999999976544
No 263
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.43 E-value=0.0024 Score=68.24 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=55.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhcCCCCc
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNIT 296 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg~~gi~ 296 (571)
+....++.|.+|+++++|++|..++++++..++++|.+.+.++. ..+ .++.||+|+......+||-..-. ..+
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll~~~~~-~~~ 297 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLLPQEWR-QFE 297 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhCChhhh-cCH
Confidence 33444557999999999999998652101114888888532221 223 37899999998777776532100 000
Q ss_pred ccccCcccCCCCCCCCCceEEecCCCcc
Q 008281 297 VVLDQPLVGQGMSDNPMNAIFVPSPVPV 324 (571)
Q Consensus 297 ~~~~~p~VG~nl~dh~~~~v~~~~~~~~ 324 (571)
. ...+ +++...|...+.+.++.++
T Consensus 298 ~---~~~l-~~l~~~pi~~v~l~~~~~v 321 (474)
T TIGR02732 298 E---FDNI-YKLDAVPVATVQLRYDGWV 321 (474)
T ss_pred H---HhhH-hcCCCCCeEEEEEEecccc
Confidence 0 0011 1344456666766666554
No 264
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.0037 Score=61.20 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=32.8
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..+|||.|||+|.+|...|++.++ |.||.|+|..-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 459999999999999999999999 99999999883
No 265
>PLN02487 zeta-carotene desaturase
Probab=96.40 E-value=0.0041 Score=67.50 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=33.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
..+|+|||+|++|+++|++|++ |.+|+|+|+.....
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 4699999999999999999999 99999999987654
No 266
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.37 E-value=0.0036 Score=66.74 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
....+|+|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 456799999999999999999999 9999999998654
No 267
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.34 E-value=0.0028 Score=66.70 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=29.3
Q ss_pred cEEEECCCcchHHHHHhhcC-C-CeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (571)
.|+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 58999999999999999999 7 59999999754
No 268
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.30 E-value=0.0035 Score=72.17 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=33.4
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
...+|+|||||+||+++|+.|++ |.+|+|+|+.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence 46789999999999999999999 99999999986544
No 269
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.30 E-value=0.004 Score=70.64 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
....||+|||||++|+++|..|++ |.+|+|+|+...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 456799999999999999999999 999999998643
No 270
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.28 E-value=0.0036 Score=69.87 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...+|+|||||++|+++|..|++ |.+|+|+|+....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 46799999999999999999999 9999999998654
No 271
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.27 E-value=0.0033 Score=72.99 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
...+|+|||||++|+++|..|++ |++|+|+|++....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 46799999999999999999999 99999999986543
No 272
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.24 E-value=0.0045 Score=63.41 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=34.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~~~ 82 (571)
..+.-+||||+|.+|+.+|.+|-+ ...|+|+|+.++.++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 345679999999999999999998 479999999988764
No 273
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.22 E-value=0.0043 Score=70.81 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
....+|+|||||++|+.+|+.|++ |.+|+|+|+.....
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 346799999999999999999999 99999999986543
No 274
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.18 E-value=0.039 Score=56.78 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.1
Q ss_pred cEEEECCCcchHHHHHhhcC-C--CeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (571)
-+||||||.+|+.+|.+|.. . .+|+|+|+.....-
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~ 42 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF 42 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc
Confidence 49999999999999999999 5 88999999986543
No 275
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.07 E-value=0.0061 Score=67.83 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
....+|+|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 345799999999999999999999 9999999998654
No 276
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.05 E-value=0.044 Score=58.55 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=29.6
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+++|||+|.+|+-+|..|++ |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 479999999999999999999 99999999885
No 277
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.01 E-value=0.064 Score=55.67 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=30.1
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 369999999999999999999 999999998753
No 278
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.00 E-value=0.008 Score=63.94 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC---CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~ 81 (571)
....|+|||||++|+.+|..|++ |.+|.|+|+-+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 45689999999999999999984 89999999987654
No 279
>PLN03000 amine oxidase
Probab=95.95 E-value=0.0065 Score=68.16 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
...||||||+|++|+.+|+.|++ |.+|+|+|+.....+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 46899999999999999999999 999999999887654
No 280
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.92 E-value=0.064 Score=57.40 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=36.0
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHH
Q 008281 222 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 286 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~L 286 (571)
++.|++|+++++|+++..+++ .+ .|.+.+.+|+..++. ++.||+|+|..-+..+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i~-----~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQELE-----ADKVLQAIGFAPRVEG 277 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEEE-----eCEEEECcCcccCCCC
Confidence 346899999999999975433 32 244432356544453 7999999997655554
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.92 E-value=0.089 Score=57.07 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=43.3
Q ss_pred CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHh
Q 008281 224 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 289 (571)
Q Consensus 224 ~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~ 289 (571)
.|+++++++.|++|..+++ ++++|.+.+. +|+..++. ++.|+++.|..-++.+|..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i~-----~D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHLE-----LEGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeECCccCchHHhh
Confidence 5899999999999986544 8888988753 45545553 7999999998877777643
No 282
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.81 E-value=0.1 Score=56.63 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=41.5
Q ss_pred CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHH
Q 008281 224 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 288 (571)
Q Consensus 224 ~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl 288 (571)
.|++|++++.|+++.-+++ ++++|.+.+. +|+..++ .++.||+|.|..-++.+|.
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 5899999999999976544 7888888753 3444455 3799999999877777664
No 283
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.80 E-value=0.01 Score=60.94 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...+++|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 35689999999999999999999 9999999998654
No 284
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.72 E-value=0.01 Score=63.40 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 56799999999999999999999 9999999998654
No 285
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.71 E-value=0.0095 Score=67.36 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.....|+|||+|+||+.+|+.|+. |.+|+|+|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 356789999999999999999999 99999999864
No 286
>PLN02976 amine oxidase
Probab=95.69 E-value=0.0097 Score=69.40 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=33.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
..+|++|||+|++|+.+|+.|++ |.+|+|||+.....+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 45899999999999999999999 999999999765543
No 287
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.67 E-value=0.1 Score=55.93 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=29.8
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 379999999999999999999 999999998853
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.67 E-value=0.046 Score=62.29 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=27.3
Q ss_pred EEEECCCcchHHHHHhhcC----CCeEEEEecCCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 80 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~----g~~VlvlE~G~~~ 80 (571)
+||||+|++|+.+|.+|.+ +.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 5899999999999998866 4699999988653
No 289
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.52 E-value=0.0096 Score=67.60 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhcC---CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~ 79 (571)
+|+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999998 689999999864
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.50 E-value=0.11 Score=54.34 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=29.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..|++ |.+|.|+|++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 69999999999999999999 999999998853
No 291
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.49 E-value=0.013 Score=62.97 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.2
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
...+++|||+|++|+.+|..|++ |.+|+|+|+...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34799999999999999999999 999999999864
No 292
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.48 E-value=0.019 Score=60.46 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=32.3
Q ss_pred CCccEEEECCCcchHHHHHhhc-C-CCeEEEEecCCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLS-Q-NASVLLLERGGSPYG 82 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La-~-g~~VlvlE~G~~~~~ 82 (571)
...-|+|||||++|+.+|.+|. + |.+|.|+|+-+.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 3456999999999999999875 5 999999999986553
No 293
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.43 E-value=0.12 Score=55.50 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=27.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 68999999999999999988 99999999875
No 294
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.43 E-value=0.014 Score=64.91 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.7
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 46789999999999999999999 99999999997643
No 295
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.39 E-value=0.1 Score=54.94 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=30.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.++|||+|..|+-.|.-++. |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 49999999999999999999 9999999999753
No 296
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.35 E-value=0.14 Score=54.60 Aligned_cols=31 Identities=32% Similarity=0.691 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 69999999999999999998 99999999885
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=95.16 E-value=0.29 Score=49.52 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=40.0
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCC--CceeEEeeecCCCeeEEEecCCcCcHHHH
Q 008281 222 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT--GAKHRAYLKNGPKNEIIVSAGALGSPQLL 287 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~--g~~~~~~~~~~a~~~VVLaAGai~tp~LL 287 (571)
+..|+++++++.|++|.-++. ++.+|++.+.. +...++ .++.||++.|..-...|+
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF 253 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh
Confidence 456899999999999976543 67788876432 233344 479999999976666644
No 298
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.03 E-value=0.024 Score=57.37 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=32.8
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-C--CeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~~~ 82 (571)
...-+++|||+|.+|+.+|+.|++ + ..|.|.|++++..+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 346789999999999999999999 4 46788999987653
No 299
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.2 Score=52.00 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=28.2
Q ss_pred ccEEEECCCcchHHHHHhhcC----CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~----g~~VlvlE~G~~ 79 (571)
++|+|||+|++|..+|..|.+ ..+|.|+|.-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 689999999999999999987 234999998754
No 300
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.92 E-value=0.15 Score=54.47 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 68999999999999999998 999999998753
No 301
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.017 Score=57.84 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=37.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 83 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (571)
|+++|||||+|.|..=|+++..|+- |.+||.++|.+..++.
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence 3567999999999999999999999 9999999999988754
No 302
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.013 Score=57.42 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=47.9
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHHHHHhh
Q 008281 221 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 290 (571)
Q Consensus 221 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~S 290 (571)
..-+|++|+++++-+.|.-|++ +++|..|+++ .|..+.+. =..|.+--|-+-++.+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence 3458999999999999998776 9999999975 46666664 36788888888888888644
No 303
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.91 E-value=0.17 Score=54.09 Aligned_cols=31 Identities=29% Similarity=0.575 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 58999999999999999999 99999999875
No 304
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.91 E-value=0.029 Score=61.55 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=32.8
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
...-+|+|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345689999999999999999999 9999999987654
No 305
>PRK13984 putative oxidoreductase; Provisional
Probab=94.91 E-value=0.028 Score=62.25 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
....+++|||+|++|+.+|..|++ |.+|+|+|+....
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 456789999999999999999999 9999999998754
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.90 E-value=0.35 Score=48.04 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=29.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-.++|||+|..|+-+|..|++ +.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 479999999999999999999 99999998863
No 307
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.87 E-value=0.23 Score=53.09 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=26.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58899999999999888888 88999998875
No 308
>PRK06370 mercuric reductase; Validated
Probab=94.85 E-value=0.22 Score=53.23 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=29.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 368999999999999999999 999999998853
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.82 E-value=0.2 Score=53.72 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 68999999999999999999 999999998853
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=94.82 E-value=0.15 Score=54.32 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.8
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
=.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999 99999998763
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.77 E-value=0.16 Score=58.15 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 222 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 222 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
++.|++|++++.|++|..++.+ ....|.+. +|+. + .++.||+|+|.--+..|+..+|
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~G 254 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCG 254 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcC
Confidence 4468999999999999764332 44555554 5653 3 3799999999888888776666
No 312
>PRK06116 glutathione reductase; Validated
Probab=94.76 E-value=0.23 Score=52.94 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=27.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 68899999999999999988 89999998875
No 313
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.65 E-value=0.2 Score=53.24 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 99999998874
No 314
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.65 E-value=0.03 Score=58.57 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-CC--eEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~--~VlvlE~G~~~ 80 (571)
..+|||||+|++|+.+|..|.+ +. +|+|+++....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4579999999999999999998 64 89999988653
No 315
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.64 E-value=0.15 Score=54.12 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=29.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-.++|||+|..|+-+|..|.+ |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 469999999999999999999 99999998875
No 316
>PLN02507 glutathione reductase
Probab=94.63 E-value=0.25 Score=53.27 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 68999999999999998888 89999998875
No 317
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.55 E-value=0.23 Score=52.75 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=27.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 58899999999999988888 88999998875
No 318
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.48 E-value=0.031 Score=59.44 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=29.6
Q ss_pred cEEEECCCcchHHHHHhhcC-C--CeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~~ 80 (571)
.+||||+|++|+.+|.+|++ + .+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 59999999999999999998 5 599999998753
No 319
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=0.049 Score=54.69 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=38.2
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 85 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~~~ 85 (571)
..+||+||||.|..=+++|...++ |.+||-|++..++++++.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccc
Confidence 568999999999999999999999 999999999998876543
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.19 E-value=0.047 Score=57.64 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=32.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
+...++||||+|.+|+.+|.+|.. +.+|+|||+....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 346789999999999999999987 7899999987754
No 321
>PRK14727 putative mercuric reductase; Provisional
Probab=94.17 E-value=0.25 Score=53.04 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 58999999999999999998 9999999864
No 322
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.12 E-value=0.38 Score=51.47 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=27.6
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 58999999999999999988 899999988753
No 323
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.86 E-value=0.36 Score=55.14 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 58999999999999999999 99999999874
No 324
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=93.85 E-value=0.12 Score=54.16 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=30.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.||.+|||+|-+|+-.|..|+| |.+|.++-+-.
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~ 88 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF 88 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence 5999999999999999999999 99999986653
No 325
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.71 E-value=0.36 Score=51.19 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=26.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 68888888888888888888 88888888874
No 326
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.083 Score=52.54 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=35.9
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 83 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (571)
..|||||+|.|..=|+++..|+- |.+||+|++.+..++.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 37999999999999999999998 9999999999987653
No 327
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.92 E-value=0.078 Score=55.91 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
--.|.|||||++|+.+|..|+. |.+|++.|+-+..
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 4689999999999999999999 9999999998654
No 328
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.79 E-value=0.8 Score=49.17 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=26.4
Q ss_pred cEEEECCCcchHHHHHhh---cC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATL---SQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~L---a~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..+ .+ |.+|.|+|+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 589999999999988644 44 889999998854
No 329
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.74 E-value=0.11 Score=53.72 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhcC----CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~----g~~VlvlE~G~~~ 80 (571)
.+||||+|++|+.+|.+|.+ +.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 38999999999999999963 6899999988764
No 330
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.67 E-value=0.11 Score=53.96 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=42.0
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHHHhhc
Q 008281 218 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 291 (571)
Q Consensus 218 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LLl~Sg 291 (571)
...+++.|+++++++.|+++..+++ . ..|.+ .+|+. + .++.||+|+|.-..+.++..+|
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCC
Confidence 3455667999999999999986543 2 23444 35543 3 3799999999877777877766
No 331
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=92.56 E-value=0.13 Score=51.33 Aligned_cols=36 Identities=33% Similarity=0.414 Sum_probs=31.0
Q ss_pred CccEEEECCCcchHHHHHhhcC---CCeEEEEecCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY 81 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~ 81 (571)
..-|+|||||+||.-+|..|-+ +.+|.|.|+-+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 4479999999999999999766 68999999987654
No 332
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.52 E-value=0.12 Score=50.35 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhcC--C-CeEEEEecCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSPY 81 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~--g-~~VlvlE~G~~~~ 81 (571)
.++|.|+|||+|.+|+.+|.++.. + -+|.|||--....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy 77 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY 77 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcc
Confidence 579999999999999999999998 4 5899999776543
No 333
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.36 E-value=0.64 Score=49.58 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
-.++|||+|..|+-+|..|++ |. +|.|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 369999999999999999998 86 899998753
No 334
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.35 E-value=0.057 Score=51.12 Aligned_cols=37 Identities=35% Similarity=0.591 Sum_probs=31.4
Q ss_pred EEEECCCcchHHHHHhhcC---CCeEEEEecCCCCCCCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGNPN 85 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~~~~~ 85 (571)
+||||||.||-++|..|+. ..+||||-+........+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn 41 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN 41 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh
Confidence 7999999999999999998 689999998876544333
No 335
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.20 E-value=0.12 Score=50.76 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=30.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
-+.|||+|.+|+-+|+.+++ |.+|.|.|.-+..
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 48999999999999999999 9999999987654
No 336
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=91.68 E-value=0.65 Score=46.47 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=38.4
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcC
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 282 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~ 282 (571)
..+.+++.+-.+.+|+.|.++... +...+..+.+. .+++..... ..+.|++..|.+.
T Consensus 236 yL~~H~Vdf~~~~~Vedi~v~~t~-gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsiT 292 (587)
T COG4716 236 YLKSHGVDFTYDQKVEDIDVDDTP-GKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSIT 292 (587)
T ss_pred HHHHcCCceEeccEEeeeeeccCc-chhHHHHHHHh-cCcceeecC----CCceEEEecceec
Confidence 457789999999999999998653 22233344322 245444443 6788999988763
No 337
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.64 E-value=0.17 Score=57.11 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
..-.-|.|||||++|+.+|..|-+ |..|+|.||.+...+
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 446789999999999999999999 999999999987653
No 338
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.83 E-value=0.94 Score=51.60 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CCe-EEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~ 78 (571)
.|||||+|..|+-+|..|.+ |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999999999999999999 876 99998763
No 339
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.59 E-value=0.2 Score=44.31 Aligned_cols=30 Identities=40% Similarity=0.579 Sum_probs=28.2
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|+|+|..|+..|.+|++ |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 5799999999999999999 99999999886
No 340
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=90.46 E-value=0.22 Score=52.01 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=33.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 81 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~ 81 (571)
.-+++|||+|..|+.+|..|.+ |.+|.++|+.+...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 3689999999999999999999 99999999997653
No 341
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.38 E-value=0.24 Score=47.19 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=29.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+||||+|--|..+|..|++ |..|+++|+-..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 48999999999999999999 999999998864
No 342
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.24 Score=45.86 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.0
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-.++|||||+++-.+|.++++ .+|-||.|-+-
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~ 41 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM 41 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence 469999999999999999999 89999999653
No 343
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=89.72 E-value=0.81 Score=47.96 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=42.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHH
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 286 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~L 286 (571)
+....++.|++++++++|+++..+++ +++.|.. .+|+...+. ++.||||+|.+.+.-|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~--~~g~~~~i~-----AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWT--RNHGDIPLR-----ARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEe--eCCceEEEE-----CCEEEEeCCCcccCce
Confidence 33455678999999999999988765 6766653 255555554 7899999998866554
No 344
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=88.95 E-value=1.4 Score=44.80 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-C--CeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~~ 79 (571)
.....|+|||||-+++-++..|.+ + .+|.++=|+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 456789999999999999999998 5 48999988754
No 345
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.63 E-value=0.44 Score=44.35 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.8
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 4579999999999999999999 999999988753
No 346
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.58 E-value=0.88 Score=49.04 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 207 QNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 207 ~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~-~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
.+|...-+..+...+++.|.+|++++.|++|+.+++ ++++|.+.+. +|....+. ++.||+++....+.+
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~~-----ad~VI~~~~~~~~~~ 297 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNVK-----ADDVVANLPPQSLLE 297 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEEE-----CCEEEECCCHHHHHH
Confidence 445433333344555667999999999999998876 8888887642 12222343 788999888654444
Q ss_pred H
Q 008281 286 L 286 (571)
Q Consensus 286 L 286 (571)
|
T Consensus 298 l 298 (492)
T TIGR02733 298 L 298 (492)
T ss_pred h
Confidence 3
No 347
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.32 E-value=0.41 Score=50.72 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.6
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.++|||+|.+|+-+|..|++ |.+|.|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 69999999999999999999 9999999998653
No 348
>PRK07846 mycothione reductase; Reviewed
Probab=88.18 E-value=0.45 Score=50.66 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=31.1
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 379999999999999999999 9999999998643
No 349
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=87.82 E-value=0.45 Score=50.60 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.++|||+|..|+-+|..|++ |.+|.|||+++..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 69999999999999999999 9999999999653
No 350
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.72 E-value=0.47 Score=47.61 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=29.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|+..|.+|++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 49999999999999999999 99999999974
No 351
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=87.57 E-value=0.49 Score=50.58 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 479999999999999999999 9999999998643
No 352
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.46 E-value=0.9 Score=46.22 Aligned_cols=38 Identities=34% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhcC--CCeEEEEecCCCC
Q 008281 43 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP 80 (571)
Q Consensus 43 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~G~~~ 80 (571)
+++.+|+|.||-|+.-+.+|.-|.+ +.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 5678999999999999999999999 6899999998754
No 353
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.75 E-value=0.73 Score=46.39 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=29.4
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-.+.|||+|..|+.+|.+|++ |.+|.++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 359999999999999999999 99999998874
No 354
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=86.67 E-value=0.43 Score=49.30 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=30.1
Q ss_pred CccEEEECCCcchHHHHHhhcC--C------------CeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ--N------------ASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~--g------------~~VlvlE~G~~~ 80 (571)
--+++|||||+.|.-+|.+|++ . .+|.|+|+++..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 3579999999999999999986 1 299999999865
No 355
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=86.51 E-value=0.48 Score=42.32 Aligned_cols=30 Identities=37% Similarity=0.495 Sum_probs=27.4
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|+|+|..|.++|..|++ |.+|.|..+-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6899999999999999999 99999987753
No 356
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.02 E-value=0.62 Score=42.70 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.9
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
|.|||+|..|..+|..++. |.+|.|++...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 6899999999999999999 99999999864
No 357
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.00 E-value=0.64 Score=49.26 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=29.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 69999999999999999999 999999999864
No 358
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=85.52 E-value=0.74 Score=48.63 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=30.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|..|+-+|..|++ |.+|.+++++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 369999999999999999999 999999998864
No 359
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.38 Score=46.71 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=26.7
Q ss_pred cEEEECCCcchHHHHHhhcC-C-CeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~ 78 (571)
=|||||+|-.|+.++.-|.+ | .|+.+++=-.
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 38999999999999999999 7 6898887543
No 360
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.18 E-value=0.8 Score=48.77 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 369999999999999999999 999999999864
No 361
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=85.11 E-value=0.79 Score=48.92 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 369999999999999999999 9999999998643
No 362
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=84.93 E-value=1.6 Score=46.51 Aligned_cols=55 Identities=13% Similarity=0.357 Sum_probs=38.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCcee-EEeeecCCCeeEEEecCC
Q 008281 217 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKH-RAYLKNGPKNEIIVSAGA 280 (571)
Q Consensus 217 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~-~~~~~~~a~~~VVLaAGa 280 (571)
+...+.+.|.+|++++.|++|..++++ ++++|++.+..++.. ++ .++.||+|+..
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~-----~a~~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEV-----TADAYVSAMPV 274 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEE-----ECCEEEEcCCH
Confidence 333444568999999999999875553 788999874333221 33 37889998864
No 363
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.58 E-value=0.9 Score=37.99 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
|||||.|..|..+|..|.+ +.+|+++|+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999 77999999875
No 364
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=84.55 E-value=0.9 Score=50.49 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 69999999999999999999 9999999998754
No 365
>PTZ00058 glutathione reductase; Provisional
Probab=83.88 E-value=0.94 Score=49.46 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.5
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 369999999999999999999 999999999864
No 366
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.43 E-value=1 Score=49.25 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.++|||+|..|+-+|..|++ |.+|.|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 369999999999999999999 999999999853
No 367
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=83.31 E-value=1.1 Score=51.49 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.6
Q ss_pred cEEEECCCcchHHHHHhhcC-----CCeEEEEecCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPY 81 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-----g~~VlvlE~G~~~~ 81 (571)
.+||||+|++|+.+|.+|.+ +.+|+|+++.+...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 69999999999999999964 47999999987653
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.27 E-value=1.1 Score=41.23 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.5
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|||.|..|+.+|..||+ |.+|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999 99999999774
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.97 E-value=1.1 Score=48.22 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999 99999999764
No 370
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.52 E-value=1 Score=45.18 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|+.+|..|++ |.+|.++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 48999999999999999999 99999999874
No 371
>PLN02546 glutathione reductase
Probab=82.47 E-value=1.1 Score=48.79 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 79999999999999999999 999999999864
No 372
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.29 E-value=1.1 Score=44.77 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
+.|||+|..|+.+|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999 999999988
No 373
>PRK13748 putative mercuric reductase; Provisional
Probab=82.26 E-value=1.1 Score=49.05 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|+|++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 69999999999999999999 99999999853
No 374
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.22 E-value=1.2 Score=44.50 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=27.4
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+.|||+|..|+.+|..|++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 7899999999999999999 9999999984
No 375
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=81.94 E-value=1.1 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+.-.++|||+|..|..-+..|.+ |.+|.|+..-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 34569999999999999999999 9999998655
No 376
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=81.68 E-value=3.9 Score=47.07 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.3
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEE
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR 255 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~ 255 (571)
.|.+.|+++..++.-.+|+.|+++ ++++|++.
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~g----~v~~l~~~ 680 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKYG----HVESVEFE 680 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCCC----eEEEEEEE
Confidence 456789999999999999987654 99999886
No 377
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=81.40 E-value=1.4 Score=42.90 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-C-------CeEEEEecC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g-------~~VlvlE~G 77 (571)
...+++|||+|..|++.|..+.+ . .+|.|++--
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 35689999999999999966665 2 577777643
No 378
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=81.32 E-value=0.94 Score=47.33 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=25.0
Q ss_pred cchHHHHHhhcC-CCeEEEEecCCCCCCC
Q 008281 56 TAGCPLAATLSQ-NASVLLLERGGSPYGN 83 (571)
Q Consensus 56 ~aG~~~A~~La~-g~~VlvlE~G~~~~~~ 83 (571)
.+|+++|++|++ |.+|+|||+.+..++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 489999999999 9999999999887653
No 379
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=81.24 E-value=1.5 Score=39.11 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=27.1
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEe
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLE 75 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE 75 (571)
.--++|||+|..|.--|..|.+ |.+|.|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4469999999999999999998 99999993
No 380
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=81.24 E-value=2.8 Score=44.87 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=31.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCCCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 82 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~~~ 82 (571)
+++|||+|.+|+++|++|++ |.+|+|+|+.....+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 48999999999999999999 999999999876543
No 381
>PRK14694 putative mercuric reductase; Provisional
Probab=80.89 E-value=1.4 Score=47.09 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|++ |.+|.|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 69999999999999999999 99999999753
No 382
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.76 E-value=1.5 Score=40.99 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=28.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
.--++|||+|-.|...|..|.+ |.+|.|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 4469999999999999999999 999999974
No 383
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.78 E-value=1.5 Score=46.78 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=28.7
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
|.|||.|.+|+.+|+.|.+ |.+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 7999999999999999999 999999998754
No 384
>PLN02487 zeta-carotene desaturase
Probab=79.72 E-value=3.4 Score=45.14 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=43.6
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHHHH
Q 008281 218 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 287 (571)
Q Consensus 218 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~LL 287 (571)
...+++.|.+|++++.|++|..+.++++..+++||.+.+ ++....+ .++.||+|++.....+||
T Consensus 302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 345567899999999999999985421223689998852 2332233 378999999976555544
No 385
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.43 E-value=1.6 Score=46.49 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=29.8
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.-.++|||+|..|..+|..|++ |.+|.+.|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3458999999999999999999 99999998864
No 386
>PRK04148 hypothetical protein; Provisional
Probab=79.02 E-value=1.9 Score=37.15 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=27.9
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.+++||.| .|..+|..|++ |.+|+.+|....
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 359999999 88888999999 999999997753
No 387
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.82 E-value=1.7 Score=44.47 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=27.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CCe-EEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~ 78 (571)
.++|||+|..|+-+|..|.+ |.+ |.|+|+..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999999999999999988 876 99999864
No 388
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=78.58 E-value=2 Score=37.11 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.8
Q ss_pred ccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
.-++|||+|..|+.+|..|+. |. ++.|++....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 458999999999999999999 85 8999997754
No 389
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.56 E-value=1.9 Score=42.80 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=28.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+.|||+|..|..+|..|++ |.+|.++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999999999999999999 99999998764
No 390
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.19 E-value=1.8 Score=42.91 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=28.1
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|||+|..|..+|..|++ |.+|+++++..
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 7899999999999999999 99999998764
No 391
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=78.18 E-value=1.7 Score=46.62 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 59999999999999999999 9999999974
No 392
>PTZ00052 thioredoxin reductase; Provisional
Probab=78.12 E-value=1.8 Score=46.75 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 69999999999999999999 9999999864
No 393
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.02 E-value=2.1 Score=43.13 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=28.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|||+|..|...|..++. |.+|.+.+.-+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999 99999999764
No 394
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=77.77 E-value=2.2 Score=45.45 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=29.7
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-.|+|||+|.+|+-+|..|++ +.+|.++.++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 369999999999999999999 99999999875
No 395
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=77.54 E-value=2.1 Score=37.13 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=28.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCe-EEEEecC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G 77 (571)
..--++|||+|-+|-.+++.|.+ |.+ |.|+-|-
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35569999999999999999999 865 9998765
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.10 E-value=2.2 Score=39.92 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=27.0
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEec
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLER 76 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~ 76 (571)
-++|||+|..|..-|..|.+ |.+|.|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 69999999999999999999 999999964
No 397
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=77.06 E-value=2.5 Score=41.44 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
...-+|+|+|+|..|.-+|+-+.- |.+|.+||....
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 456789999999999999999998 999999998853
No 398
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=77.03 E-value=2.5 Score=41.31 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (571)
....|+|||.|..|+.+|..|+. | .++.|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45679999999999999999999 8 68999996653
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=76.81 E-value=2.2 Score=43.49 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
.+.|||+|..|..+|..|++ |.+|.++.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 38999999999999999999 9999999985
No 400
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.68 E-value=3.1 Score=37.53 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=29.0
Q ss_pred CCccEEEECCCc-chHHHHHhhcC-CCeEEEEecC
Q 008281 45 SYYDYIIIGGGT-AGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~-aG~~~A~~La~-g~~VlvlE~G 77 (571)
....++|||+|- .|..+|..|.+ |.+|.++.|-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 467899999995 69999999999 9899999875
No 401
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=76.07 E-value=3 Score=44.21 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 80 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~~ 80 (571)
-+|+|||+|.+|.-+|..|++ |.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 489999999999999999999 9999999998754
No 402
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.82 E-value=3.1 Score=41.23 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+.|||+|..|.-+|..|+. |.+|+++++.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48899999999999999999 99999999875
No 403
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=75.77 E-value=2.5 Score=39.40 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=27.6
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
-++|+|.|-.|..+|.+|.+ |.+|++.++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 49999999999999999999 9999998754
No 404
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.62 E-value=2.7 Score=43.17 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhcC-C-CeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~ 78 (571)
+++|||+|-.|.++|..|++ + .+|++..|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 58999999999999999999 6 8999998874
No 405
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.37 E-value=2.5 Score=42.77 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=27.3
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+.|||+|.-|..+|..|++ |.+|.++.|.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7899999999999999999 9999999874
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.07 E-value=2.6 Score=43.48 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=29.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
...+++|||+|..|..+|..|.. |.+|.++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 34569999999999999999999 9999999875
No 407
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=74.99 E-value=2.7 Score=39.15 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
....|.|||+|..|+.+|..|+. |. ++.|++...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35679999999999999999999 97 699988764
No 408
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=74.62 E-value=1.7 Score=44.49 Aligned_cols=35 Identities=29% Similarity=0.622 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhcC---------------CCeEEEEecCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ---------------NASVLLLERGGSP 80 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~---------------g~~VlvlE~G~~~ 80 (571)
--.+||||||+.|.-.|.+|++ -.+|.++|+.+..
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 4579999999999999999974 2489999999753
No 409
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=74.52 E-value=2.8 Score=44.23 Aligned_cols=33 Identities=33% Similarity=0.726 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhcC---------------CCeEEEEecCCCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ---------------NASVLLLERGGSP 80 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~---------------g~~VlvlE~G~~~ 80 (571)
.++|||+|+.|.-+|..|++ +.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 69999999999999998874 5789999998653
No 410
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.36 E-value=3.3 Score=41.17 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|..+|..|+. |.+|.+.++..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998763
No 411
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.20 E-value=2.9 Score=41.59 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=28.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|||+|..|..+|..|+. |.+|.++++..
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8899999999999999999 99999998764
No 412
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=73.92 E-value=2.8 Score=42.61 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
...-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35569999999999999999999 85 8999987754
No 413
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.72 E-value=2.8 Score=42.03 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=28.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
+.|+|+|+.|+..|++|++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 7899999999999999999 988999887753
No 414
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=72.81 E-value=4.1 Score=35.55 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=28.4
Q ss_pred EEEECCCcchHHHHHhhcC-CC-eEEEEecCCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 80 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~~ 80 (571)
++|||.|..|+.+|..|+. |. ++.|++.....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 7899999999999999999 85 79999877543
No 415
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=72.49 E-value=3.4 Score=37.32 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
...-|+|+|+|.+|.-+|.-|.. |.+|.++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34679999999999999999999 99999999763
No 416
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.30 E-value=4 Score=41.36 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+.|||+|..|..+|..|++ |.+|.++.+..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998853
No 417
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=72.25 E-value=3.8 Score=41.67 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
...-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35679999999999999999999 86 8999998653
No 418
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=71.60 E-value=4 Score=35.42 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
++|+|+|..+..+|.-++. |++|.|++-...
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999988888 999999997754
No 419
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.33 E-value=3.8 Score=41.76 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|++.|.-||+ |..|+.++.-.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 37899999999999999999 99999998764
No 420
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.95 E-value=3.5 Score=40.73 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|..+|..|+. |.+|++++...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999 99999998653
No 421
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.79 E-value=4.5 Score=40.63 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|..+|..|+. |.+|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998653
No 422
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=70.75 E-value=4.4 Score=40.06 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=29.1
Q ss_pred EEEECCCcchHHHHHhhcC-C-CeEEEEecCCCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 81 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~ 81 (571)
|+|||+|.-|+.+|..|+. | .++.+++.+....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~ 36 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSY 36 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc
Confidence 7999999999999999999 8 4899999886543
No 423
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=70.65 E-value=5.4 Score=38.39 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 80 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~ 80 (571)
....|+|||.|..|+.+|..|+. | .++.+++.....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 45789999999999999999999 8 589998877644
No 424
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=70.63 E-value=3.9 Score=44.67 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=32.4
Q ss_pred CccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGN 83 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~~~ 83 (571)
..-|+|||+|.-|+.+|..|+. | .++.+++.+.....+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SN 377 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSN 377 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCc
Confidence 5679999999999999999999 8 489999988765433
No 425
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.53 E-value=4 Score=42.57 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=29.2
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.-.|+|+|.|..|..+|..|.. |.+|+++|.-+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3469999999999999999988 99999998764
No 426
>PRK07233 hypothetical protein; Provisional
Probab=70.06 E-value=6.6 Score=41.27 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=42.2
Q ss_pred cCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcHH
Q 008281 206 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 285 (571)
Q Consensus 206 ~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp~ 285 (571)
+.+|.......+...+.+.|.+|+++++|++|..+++ +++.+.. +++. + .++.||+|+..-..++
T Consensus 193 ~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~~--~-----~ad~vI~a~p~~~~~~ 257 (434)
T PRK07233 193 LEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGEE--E-----DFDAVISTAPPPILAR 257 (434)
T ss_pred cCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCce--E-----ECCEEEECCCHHHHHh
Confidence 3445333333344555667899999999999998765 5555542 3432 3 3688999998644444
Q ss_pred H
Q 008281 286 L 286 (571)
Q Consensus 286 L 286 (571)
|
T Consensus 258 l 258 (434)
T PRK07233 258 L 258 (434)
T ss_pred h
Confidence 3
No 427
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=69.99 E-value=4.2 Score=40.70 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=26.5
Q ss_pred cEEEECCCcchHHHHHhhcC-CC-eEEEEec
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLER 76 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~ 76 (571)
-+.|||+|..|+.+|..|+. |. +|+++|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 37899999999999999999 75 8999998
No 428
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=69.78 E-value=36 Score=35.02 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=0.0
Q ss_pred cccccCCCCCCccEEEECCCcchHHHHHhhcC---CCeEEEEecCCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCC
Q 008281 36 HNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISED 112 (571)
Q Consensus 36 ~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (571)
+.+.+........++|||+|++..+++..... +.+||+|-.-+..+
T Consensus 168 ~~P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP------------------------------- 216 (659)
T KOG1346|consen 168 SPPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP------------------------------- 216 (659)
T ss_pred CCCccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc-------------------------------
Q ss_pred cccccCcceecccccccCceecCCChh---hhccCCCChhhhhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCC
Q 008281 113 GVINSRARVLGGGSCLNAGFYTRAAPY---YVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNG 189 (571)
Q Consensus 113 ~~~~~~g~~lGG~s~~n~~~~~r~~~~---~~~~~gw~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (571)
|+|++-+ | |..+. .....
T Consensus 217 --------------------YmRPPLSKELW-----~~~dp----------------------------------n~~k~ 237 (659)
T KOG1346|consen 217 --------------------YMRPPLSKELW-----WYGDP----------------------------------NSAKK 237 (659)
T ss_pred --------------------ccCCCcchhce-----ecCCC----------------------------------Chhhh
Q ss_pred CccCCCCceeeeeEEEcCCCceecHHHhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecC
Q 008281 190 FTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNG 269 (571)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~ 269 (571)
..+..+.|..+. -++.+++-.-++.. |+.+...|+.|+.+-.|.+|..+++ -|... +|.+..+
T Consensus 238 lrfkqwsGkeRs-iffepd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~Y----- 300 (659)
T KOG1346|consen 238 LRFKQWSGKERS-IFFEPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIGY----- 300 (659)
T ss_pred eeecccCCccce-eEecCCcceeChhH-CcccccCceEEEeccceEEeecccC--------eEEec--CCcEeeh-----
Q ss_pred CCeeEEEecCC
Q 008281 270 PKNEIIVSAGA 280 (571)
Q Consensus 270 a~~~VVLaAGa 280 (571)
++..+|+|.
T Consensus 301 --dkcLIATG~ 309 (659)
T KOG1346|consen 301 --DKCLIATGV 309 (659)
T ss_pred --hheeeecCc
No 429
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=69.63 E-value=4.5 Score=36.75 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=27.7
Q ss_pred EEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7899999999999999999 86 6999998753
No 430
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=69.39 E-value=3.9 Score=38.96 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=28.7
Q ss_pred ccEEEECCCcchHHHHHhhcC-CC---eEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NA---SVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~---~VlvlE~G~~ 79 (571)
--++|+|+|.+|..+|..|.+ |. +|.|++|-+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 359999999999999999999 85 5999998753
No 431
>PLN02612 phytoene desaturase
Probab=68.99 E-value=7.5 Score=42.71 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=35.3
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCC
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 280 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGa 280 (571)
..++.|.+|++++.|++|..++++ ++.+|.+. +|+. + .++.||+|+..
T Consensus 317 ~l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~-----~ad~VI~a~p~ 364 (567)
T PLN02612 317 HFQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--V-----EGDVYVSATPV 364 (567)
T ss_pred HHHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--E-----ECCEEEECCCH
Confidence 334579999999999999986653 67777774 5643 3 27889998753
No 432
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.68 E-value=4.4 Score=40.15 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=29.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.--++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3469999999999999999999 99999998864
No 433
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=68.49 E-value=4.8 Score=40.59 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.+.|||+|..|+.+|..|++ |.+|.++.+..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 99999998864
No 434
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=67.69 E-value=4.8 Score=39.86 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=28.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
-.++|||+|-+|.++|+.|++ |. +|.|+.|-.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999998 85 799998753
No 435
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.50 E-value=5.2 Score=40.14 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.7
Q ss_pred cEEEECCCcchHHHHHhhcC-C--CeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~ 78 (571)
.+.|||+|..|+++|..|+. | ..|.++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 48999999999999999999 7 5899999864
No 436
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.27 E-value=5.4 Score=41.84 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=28.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|||.|..|+.+|..|++ |.+|+++++..
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 7899999999999999999 99999998764
No 437
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=66.98 E-value=5.4 Score=38.52 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=30.3
Q ss_pred CCccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (571)
....|+|||.|..|+.+|..|+. | .++.|++....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 46789999999999999999999 8 48999887643
No 438
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=66.90 E-value=5.9 Score=38.10 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=28.5
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CC-----------eEEEEecCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NA-----------SVLLLERGG 78 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~-----------~VlvlE~G~ 78 (571)
.....|+|||+|..|+.++..|++ |. ++.|++...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 456789999999999999999997 52 777777554
No 439
>PRK08328 hypothetical protein; Provisional
Probab=66.82 E-value=5.2 Score=38.24 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=28.3
Q ss_pred CccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
..-|+|||.|..|+.+|..|+. |. ++.|++...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5679999999999999999999 84 788886554
No 440
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=66.57 E-value=5.2 Score=38.14 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
...-|+|||.|..|+.+|..|+. |. ++.|++...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35679999999999999999999 85 788887664
No 441
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=66.42 E-value=5.1 Score=42.59 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.++|||+|..|..+|..|.+ |.+|+++|+..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999999 99999999854
No 442
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=66.13 E-value=5.2 Score=39.72 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.4
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCe-EEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~-VlvlE~G~ 78 (571)
--++|+|+|-+|.++|..|++ |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 358999999999999999999 875 99998753
No 443
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=65.82 E-value=6.4 Score=36.73 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=30.6
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
.+.-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 46679999999999999999999 85 8999987654
No 444
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=65.67 E-value=6.8 Score=38.98 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=28.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.|||+|..|..+|..|+. |.+|.+.++..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999 99999998764
No 445
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=65.58 E-value=5.8 Score=41.66 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+.|||.|..|+.+|..|++ |.+|.++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 38999999999999999999 99999998754
No 446
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=65.21 E-value=6.6 Score=36.99 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
...-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 35679999999999999999999 85 6999987643
No 447
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=65.20 E-value=6 Score=37.85 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=27.2
Q ss_pred EEEECCCcchHHHHHhhcC-C-CeEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (571)
|+|||+|..|+.++..|+. | .++.|++....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7899999999999999999 8 47888887643
No 448
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.19 E-value=5.4 Score=43.73 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=30.3
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+-.+||+|.|..|..+|.+|.+ |.+|+++|+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4679999999999999999999 99999999864
No 449
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.14 E-value=6.5 Score=39.41 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=27.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
.+.|||+|..|..+|..|++ |.+|.+..|.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 48999999999999999999 9999998875
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.08 E-value=6.3 Score=37.27 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.7
Q ss_pred EEEEC-CCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIG-GGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVG-sG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+.||| +|..|..+|..|++ |.+|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987653
No 451
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=64.88 E-value=6.3 Score=39.48 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=27.1
Q ss_pred EEEECCCcchHHHHHhhcC-C--CeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~ 78 (571)
+.|||+|..|.++|+.|+. | ..|.|+++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7899999999999999999 7 4799999864
No 452
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.72 E-value=5.4 Score=42.33 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-++|+|+|..|..+|..|++ |.+|++.++..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 38999999999999999999 99999998764
No 453
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.41 E-value=6.6 Score=40.81 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.--++|||.|..|..+|..|.. |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3469999999999999999999 99999999764
No 454
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=64.09 E-value=6 Score=42.63 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+-|||+|..|.-+|..|+. |.+|.|.|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38999999999999999999 99999999874
No 455
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=64.03 E-value=6.9 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.2
Q ss_pred CccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
+.-|+|||.|..|+.+|..|+. |. ++.|++...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5679999999999999999999 85 799998664
No 456
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=63.97 E-value=7.7 Score=30.44 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=26.6
Q ss_pred ccEEEECCCcchHHHHHhhcC--CCeEEEEec
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ--NASVLLLER 76 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~--g~~VlvlE~ 76 (571)
-.++|+|+|..|..+|..|.+ +.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 359999999999999999998 468888887
No 457
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=63.57 E-value=8.5 Score=38.27 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=42.3
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCceeEEeeecCCCeeEEEecCCcCcH
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 284 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~~~g~~~~~~~~~~a~~~VVLaAGai~tp 284 (571)
...+.|..++++-+|.+..+.++ +++.|.++ ++....+ .++.+|||+|++-|-
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~tr--n~~diP~-----~a~~~VLAsGsffsk 319 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCKGG-----RVTEIYTR--NHADIPL-----RADFYVLASGSFFSK 319 (421)
T ss_pred HHHHcCceEecCCceeeeeeeCC-----eEEEEEec--ccccCCC-----ChhHeeeeccccccc
Confidence 45678999999999999999887 99999987 4433344 389999999987443
No 458
>PRK08017 oxidoreductase; Provisional
Probab=62.80 E-value=7.5 Score=37.39 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=27.0
Q ss_pred EEEECC-CcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGs-G~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
++|+|+ |..|..+|.+|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999999 99999987753
No 459
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=62.68 E-value=7.5 Score=38.70 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=27.9
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
+-|||+|..|.-+|..++. |++|++.+...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 7899999999999999999 89999999873
No 460
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.29 E-value=6.9 Score=44.25 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-|.|||+|..|.-+|..++. |.+|.|+|.-.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 461
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=61.99 E-value=7.9 Score=35.96 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
...-|+|||.|..|+.+|..|+. |. ++.+++...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35679999999999999999999 85 788888664
No 462
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=61.66 E-value=9.7 Score=38.41 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=29.1
Q ss_pred CccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
..-+.|||+|..|..+|+.|+. |. +|.|+|.-..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3469999999999999999988 85 8999997654
No 463
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=61.55 E-value=7.2 Score=44.05 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-|.|||+|..|.-+|..++. |..|.|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 49999999999999999999 99999999774
No 464
>PRK08223 hypothetical protein; Validated
Probab=61.50 E-value=7.7 Score=38.21 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=30.1
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
...-|+|||.|..|+.+|..|+. |. ++.|++-...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 46779999999999999999999 84 7888886654
No 465
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=61.20 E-value=7.8 Score=40.57 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=29.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.--++|||.|..|..+|..|.. |.+|++.|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3459999999999999999999 99999999764
No 466
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=61.05 E-value=7.1 Score=38.51 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+.|||.|..|..+|..|.+ |.+|.++++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 7899999999999999999 9999999875
No 467
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=61.01 E-value=7.1 Score=42.37 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=27.7
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
--++|+|+|.+|.++|+.|++ |.+|.++.|-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999 9999998764
No 468
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=60.98 E-value=8.5 Score=33.57 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=27.0
Q ss_pred cEEEECC-CcchHHHHHhhcC-C--CeEEEEecCC
Q 008281 48 DYIIIGG-GTAGCPLAATLSQ-N--ASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGs-G~aG~~~A~~La~-g--~~VlvlE~G~ 78 (571)
.+.|||+ |..|..+|..|.. + .++.|++...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 3789999 9999999999998 4 5799998874
No 469
>PRK06153 hypothetical protein; Provisional
Probab=60.55 E-value=8.7 Score=39.39 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (571)
..-|.|||.|-.|+.+|..|++ | .++.|++....
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4579999999999999999999 7 58999987654
No 470
>PLN02494 adenosylhomocysteinase
Probab=60.22 E-value=8.7 Score=40.56 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
.-.++|+|.|..|..+|.+|.. |.+|+++|+.+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3469999999999999999988 99999999865
No 471
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=60.12 E-value=9 Score=35.36 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=27.2
Q ss_pred ccEEEECC-CcchHHHHHhhcC-CCeEEEEecC
Q 008281 47 YDYIIIGG-GTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 47 ~DvIIVGs-G~aG~~~A~~La~-g~~VlvlE~G 77 (571)
-.++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45999996 9999999999999 9999998664
No 472
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=60.00 E-value=8.5 Score=38.35 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=29.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
...++|||.|..|..+|..|.. |.+|.+.++-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3469999999999999999999 99999998763
No 473
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=59.69 E-value=8.3 Score=41.55 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.3
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+-|||+|..|...|..|+. |.+|.|.++..
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999998854
No 474
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=59.68 E-value=8.3 Score=38.17 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
|+|||+|..|+-+|..|+. |. ++.|++-...
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 7999999999999999999 84 7888886643
No 475
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=59.49 E-value=8.3 Score=41.64 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=28.6
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-+-|||+|..|.-+|..|+. |..|.|.|+..
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999999775
No 476
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=59.40 E-value=8.9 Score=37.62 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=27.9
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
-.++|+|+|.+|..+|..|++ |.+|.++.|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358999999999999999999 9999999765
No 477
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=59.30 E-value=7.9 Score=38.73 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=27.4
Q ss_pred EEEECCCcchHHHHHhhcC-C-CeEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~ 79 (571)
|+|||+|..|+-+|..|+. | .++.|++....
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence 7999999999999999999 8 47899887653
No 478
>PRK06223 malate dehydrogenase; Reviewed
Probab=59.19 E-value=9.2 Score=38.28 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.9
Q ss_pred cEEEECCCcchHHHHHhhcC-CC-eEEEEecC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 77 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G 77 (571)
.+.|||+|..|..+|..|+. |. .|.|++.-
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 48999999999999999998 65 99999983
No 479
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=59.04 E-value=7.8 Score=38.67 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=26.6
Q ss_pred EEEECCCcchHHHHHhhcC-CC-eEEEEecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~ 78 (571)
+.|||+|..|..+|..|+. +. .|.|+|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4799999999999999997 65 999999874
No 480
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=58.85 E-value=9.2 Score=40.78 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.5
Q ss_pred cEEEECCCcchHHHHHhhcC-C--CeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g--~~VlvlE~G~ 78 (571)
.+.|||.|..|+.+|..||+ | .+|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 38999999999999999998 5 7899998764
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.85 E-value=8.6 Score=40.83 Aligned_cols=32 Identities=41% Similarity=0.566 Sum_probs=29.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-.+||+|.|..|..+|..|.+ |.+|+++|+-.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 459999999999999999999 99999999764
No 482
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=58.74 E-value=9.6 Score=36.06 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=26.8
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEe
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLE 75 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE 75 (571)
+..-++|||||..+.-=+..|.+ |.+|.|+-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34569999999999988888888 99999983
No 483
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=58.50 E-value=10 Score=30.29 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.1
Q ss_pred EEEECCCcchHHHHHhhcC-C---CeEEEE-ecCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-N---ASVLLL-ERGG 78 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g---~~Vlvl-E~G~ 78 (571)
+.|||+|-.|..++..|.+ | .+|+++ ++..
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 5689999999999999999 8 899976 7664
No 484
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=58.33 E-value=9.1 Score=36.55 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.3
Q ss_pred CccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
..-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4569999999999999999999 85 8888886643
No 485
>PRK07326 short chain dehydrogenase; Provisional
Probab=58.18 E-value=10 Score=35.95 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.0
Q ss_pred cEEEECC-CcchHHHHHhhcC-CCeEEEEecC
Q 008281 48 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 48 DvIIVGs-G~aG~~~A~~La~-g~~VlvlE~G 77 (571)
=++|+|+ |..|..+|.+|++ |.+|+++.|.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 3888885 8999999999999 9999999764
No 486
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=58.16 E-value=8.6 Score=40.28 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=27.2
Q ss_pred EEEECCCcchHHHHHhhcC-CC------eEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NA------SVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~------~VlvlE~G~~ 79 (571)
|+|||+|..||-++..|+. |. ++.|++....
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 7999999999999999999 76 8888886654
No 487
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=58.02 E-value=13 Score=37.40 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=28.6
Q ss_pred CccEEEECCCcchHHHHHhhcC-CC--eEEEEecCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG 78 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~--~VlvlE~G~ 78 (571)
..-+.|||+|..|..+|+.|+. +. .++|++...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4579999999999999999998 65 799999743
No 488
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.36 E-value=11 Score=35.24 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=31.1
Q ss_pred CCCccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 44 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 44 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.+.--|-|||+|.-|+-+|.-.+. |+.|.|.++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 344569999999999999999888 999999988753
No 489
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=57.33 E-value=9.2 Score=41.54 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=27.8
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
-.|+|||+|.+|+=+|.+|++ ..+|.+.=|.+.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 479999999999999999999 889998877754
No 490
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=57.03 E-value=10 Score=35.32 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=26.0
Q ss_pred EEEECCCcchHHHHHhhcC-CCeEEEEecC
Q 008281 49 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 77 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~-g~~VlvlE~G 77 (571)
+.|+|.|-.|..+|.+|+. |..|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 7899999999999999999 9999996443
No 491
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=56.96 E-value=10 Score=40.03 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=30.0
Q ss_pred CccEEEECCCcchHHHHHhhcC-CCeEEEEecCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 79 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~~ 79 (571)
.--++|||.|..|..+|.+|.. |.+|++.|+.+.
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3459999999999999999999 999999988643
No 492
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=56.96 E-value=9.8 Score=44.42 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.2
Q ss_pred ccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
=.|||||+|..|+-+|..+.+ |.+|.++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 369999999999999999999 99999999875
No 493
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=56.72 E-value=13 Score=35.41 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhcC-C-CeEEEEecCCCCC
Q 008281 46 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 81 (571)
Q Consensus 46 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~~~~ 81 (571)
..-|+|||-|-.|+.++..|++ | .++.||+.-..--
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 5579999999999999999999 8 5899999887544
No 494
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=56.67 E-value=9.7 Score=40.89 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
..-.|+|+|+|++|+.++.-+.. |.+|.++|...
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35679999999999999888877 99999998764
No 495
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=56.62 E-value=9.1 Score=43.37 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGsG~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-|.|||+|..|.-+|..++. |.+|.|+|...
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 48999999999999999999 99999999774
No 496
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=56.61 E-value=10 Score=39.24 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCccEEEECCCcchHHHHHhhcC-CC-eEEEEecCCC
Q 008281 45 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 79 (571)
Q Consensus 45 ~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvlE~G~~ 79 (571)
.+.-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 35679999999999999999999 85 7999987643
No 497
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=56.35 E-value=24 Score=37.72 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=41.8
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe---C-------CCceeEEeeecCCCeeEEEecCCcCc-HHHHH
Q 008281 220 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 288 (571)
Q Consensus 220 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~~~gV~~~~---~-------~g~~~~~~~~~~a~~~VVLaAGai~t-p~LLl 288 (571)
.+.+.|+++++++.+++|.-+++ ++++|++.. . .|...++ .++.||+|.|..-. ..|+.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhcc
Confidence 34567999999999999975444 888887642 1 2333444 48999999995443 34554
Q ss_pred hhc
Q 008281 289 LSG 291 (571)
Q Consensus 289 ~Sg 291 (571)
..|
T Consensus 408 ~~g 410 (471)
T PRK12810 408 QFG 410 (471)
T ss_pred ccC
Confidence 433
No 498
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=56.32 E-value=10 Score=37.42 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.3
Q ss_pred ccEEEECCCcchHHHHHhhcC-C-CeEEEEecCC
Q 008281 47 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 78 (571)
Q Consensus 47 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvlE~G~ 78 (571)
-.++|+|+|-+|..+|..|++ | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 358999999999999999999 8 7999998753
No 499
>PRK06057 short chain dehydrogenase; Provisional
Probab=56.24 E-value=11 Score=36.28 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.2
Q ss_pred cEEEECC-CcchHHHHHhhcC-CCeEEEEecCC
Q 008281 48 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG 78 (571)
Q Consensus 48 DvIIVGs-G~aG~~~A~~La~-g~~VlvlE~G~ 78 (571)
-++|+|+ |..|..+|.+|++ |.+|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3899998 8899999999998 99999997753
No 500
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=56.17 E-value=11 Score=39.20 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=27.6
Q ss_pred EEEECCCcchHHHHHhhcCCCeEEEEecCCC
Q 008281 49 YIIIGGGTAGCPLAATLSQNASVLLLERGGS 79 (571)
Q Consensus 49 vIIVGsG~aG~~~A~~La~g~~VlvlE~G~~ 79 (571)
+.|||.|..|+.+|.-|+.|.+|+++|+...
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~ 33 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPS 33 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence 7899999999999988877999999998753
Done!