BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008282
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/427 (48%), Positives = 283/427 (66%), Gaps = 7/427 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AV
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 204 ANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
+L+ K K ++V+ DVYRPAAI QL L EQVGV + + KP I L+EAK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV++VDTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
LS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
Query: 442 TPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P V+ +K L MEA+I +MT +ER KPE++ S R++R+A SG Q V++L+
Sbjct: 361 -PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLL 417
Query: 500 AQLFQMR 506
Q M+
Sbjct: 418 KQFDDMQ 424
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/432 (48%), Positives = 284/432 (65%), Gaps = 7/432 (1%)
Query: 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVG 144
F LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AVG
Sbjct: 1 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 60
Query: 145 VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 204
+ + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL
Sbjct: 61 HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG 120
Query: 205 NYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
+L+ K K ++V+ DVYRPAAI QL L EQVGV + + KP I L+EAK
Sbjct: 121 KFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 180
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
K DV++VDTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN +
Sbjct: 181 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP 240
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVL
Sbjct: 241 LTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVL 300
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 442
S +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I
Sbjct: 301 SLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI- 359
Query: 443 PAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA 500
P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+
Sbjct: 360 PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLK 417
Query: 501 QLFQMRVRMKNL 512
Q M+ MK +
Sbjct: 418 QFDDMQRMMKKM 429
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 287/429 (66%), Gaps = 13/429 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVA 298
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
S EK + + +A + K++ DFLKQ + + R+G S ++G++PG+ P
Sbjct: 299 SLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----P 349
Query: 444 AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLF 503
++ EK++K +EA++ +MTPEER+ P +L S RRKR+A+ SG + Q+V++ +
Sbjct: 350 QGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFE 407
Query: 504 QMRVRMKNL 512
+M+ MK+L
Sbjct: 408 EMKALMKSL 416
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 312 bits (799), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 180/415 (43%), Positives = 270/415 (65%), Gaps = 16/415 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGD+
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDIE 298
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMS-----ANFDFNDFLKQTRTVARMGSMSRVIGMIPGM 438
S +EK + + E+ +++QKK+ D Q + +MG +S+V+ IPG+
Sbjct: 299 SILEKVKGL---EEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGL 355
Query: 439 GKITPA----QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSG 489
G + P Q++ E+ ++ A + +MT +E E P ++ +S R +R+A+ SG
Sbjct: 356 GIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKS--RMRRIAEGSG 408
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/416 (40%), Positives = 257/416 (61%), Gaps = 8/416 (1%)
Query: 87 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVG 146
+L L A NKLK + K+ I E ++DI+RAL++ADV++ +V + + + +A+
Sbjct: 3 KLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEK 62
Query: 147 LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206
+G+ + ++KIV +ELVKL+G E +L + VILL G+QG GKTT +AKLA Y
Sbjct: 63 TPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122
Query: 207 LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKN 265
++K+G L+A D YRPAA +QL L E++ VP+Y T K P I K+G+E+ KK
Sbjct: 123 IQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK-- 180
Query: 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT 325
DV+I+DTAGR + +K +++E+K +K + NP E++LV+D GQ+A F +G
Sbjct: 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEI 240
Query: 326 GAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLS 384
G+I+ TKLDG ++GG ALS + PIK +G GE ++DLEPF P + R+LGMGD+ S
Sbjct: 241 GSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLES 300
Query: 385 FVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA 444
+EKA++ M E EE IM F N+ + Q + MGSM +++ MIPG G P
Sbjct: 301 LLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPK 359
Query: 445 QVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
++ E +K + +I +MT EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 360 ELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 413
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/416 (40%), Positives = 257/416 (61%), Gaps = 8/416 (1%)
Query: 87 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVG 146
+L L A NKLK + K+ I E ++DI+RAL++ADV++ +V + + + +A+
Sbjct: 3 KLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEK 62
Query: 147 LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206
+G+ + ++KIV +ELVKL+G E +L + VILL G+QG GKTT +AKLA Y
Sbjct: 63 TPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122
Query: 207 LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAKKKN 265
++K+G L+A D YRPAA +QL L E++ VP+Y T K P I K+G+E+ KK
Sbjct: 123 IQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK-- 180
Query: 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT 325
DV+I+DTAGR + +K +++E+K +K + NP E++LV+D GQ+A F +G
Sbjct: 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEI 240
Query: 326 GAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLS 384
G+I+ TKLDG ++GG ALS + PIK +G GE ++DLEPF P + R+LGMGD+ S
Sbjct: 241 GSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLES 300
Query: 385 FVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA 444
+EKA++ M E EE IM F N+ + Q + MGSM +++ MIPG G P
Sbjct: 301 LLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPK 359
Query: 445 QVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
++ E +K + +I +MT EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 360 ELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 413
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/302 (49%), Positives = 210/302 (69%), Gaps = 2/302 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVA 298
Query: 384 SF 385
S
Sbjct: 299 SL 300
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 275 bits (702), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 209/299 (69%), Gaps = 2/299 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV 297
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 209/299 (69%), Gaps = 2/299 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV 297
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 208/298 (69%), Gaps = 2/298 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGD
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD 296
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/297 (49%), Positives = 207/297 (69%), Gaps = 2/297 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMG
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 206/296 (69%), Gaps = 2/296 (0%)
Query: 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVG 144
F QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+G
Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60
Query: 145 VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 204
++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKLA
Sbjct: 61 KQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLA 118
Query: 205 NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264
Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+ +
Sbjct: 119 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 178
Query: 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI 324
D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G+
Sbjct: 179 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 238
Query: 325 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMG
Sbjct: 239 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 294
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 268 bits (685), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 206/296 (69%), Gaps = 2/296 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 379
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGM
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM 294
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 268 bits (684), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 244/405 (60%), Gaps = 5/405 (1%)
Query: 110 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLM 169
I E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +
Sbjct: 28 IKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87
Query: 170 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 229
G E + K +PT++L+ G+QG GKTT AKLA Y +K+G +V D +RP A Q
Sbjct: 88 GTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQ 146
Query: 230 LVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 289
L L ++ + V+ E ++AK+G++ K K VD++IVDTAGR + DKA+++E+K
Sbjct: 147 LRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ 206
Query: 290 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 349
+ V++P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G
Sbjct: 207 ISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATG 266
Query: 350 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSA 408
PIK +G GE+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE ++ +
Sbjct: 267 APIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRG 326
Query: 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEE 467
F D Q + +MG + +++ MIPG+G P V E+ LK + ++++MT EE
Sbjct: 327 KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEE 386
Query: 468 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512
PE++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 387 LLNPEIINYS--RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/295 (49%), Positives = 205/295 (69%), Gaps = 2/295 (0%)
Query: 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVG 144
F QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+G
Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60
Query: 145 VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 204
++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKLA
Sbjct: 61 KQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLA 118
Query: 205 NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264
Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+ +
Sbjct: 119 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 178
Query: 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI 324
D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G+
Sbjct: 179 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 238
Query: 325 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 379
TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGM
Sbjct: 239 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM 293
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 225/386 (58%), Gaps = 10/386 (2%)
Query: 112 EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG 171
E ++D++++L+ +DV++ +V + E+ + + + IV DEL KL GG
Sbjct: 33 EFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGG 92
Query: 172 EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 231
+ V P +I+L G+QG GKTT + KLA + KK+G LVA DVYRPAA DQL+
Sbjct: 93 DKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL 152
Query: 232 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKD 289
LG Q+GV VY P +IAK+G++ K +D++IVDTAGR + +++E+K+
Sbjct: 153 QLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 212
Query: 290 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 349
+ VL P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS +G
Sbjct: 213 MYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATG 272
Query: 350 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--S 407
IK +G GE++++LE F R RILGMGD+ S +EK + + + + ++ + +M
Sbjct: 273 ATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGK 332
Query: 408 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAM 463
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++ A + +M
Sbjct: 333 GKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSM 392
Query: 464 TPEEREKPELLAESPVRRKRVAQDSG 489
T +E E P ++ +S R +R+A+ SG
Sbjct: 393 TYKELENPNIIDKS--RMRRIAEGSG 416
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 225/386 (58%), Gaps = 10/386 (2%)
Query: 112 EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG 171
E ++D++++L+ +DV++ +V + E+ + + + IV DEL KL GG
Sbjct: 26 EFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGG 85
Query: 172 EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 231
+ V P +I+L G+QG GKTT + KLA + KK+G LVA DVYRPAA DQL+
Sbjct: 86 DKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL 145
Query: 232 ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKD 289
LG Q+GV VY P +IAK+G++ K +D++IVDTAGR + +++E+K+
Sbjct: 146 QLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205
Query: 290 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 349
+ VL P +V+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS +G
Sbjct: 206 MYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATG 265
Query: 350 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIM--S 407
IK +G GE++++LE F R RILGMGD+ S +EK + + + + ++ + +M
Sbjct: 266 ATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGK 325
Query: 408 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA----QVREAEKSLKIMEAMIEAM 463
D Q + +MG +S+V+ IPG+G + P Q++ E+ ++ A + +M
Sbjct: 326 GKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSM 385
Query: 464 TPEEREKPELLAESPVRRKRVAQDSG 489
T +E E P ++ +S R +R+A+ SG
Sbjct: 386 TYKELENPNIIDKS--RMRRIAEGSG 409
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 244/449 (54%), Gaps = 15/449 (3%)
Query: 82 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPM-RDIRRALLEADVSLPVVRRFVQAVSE 140
A++ ++TS L + N T+ E ++ M +++ ALLEADV++ +V++ + V
Sbjct: 4 ADLGRKITSALRSLSN-----ATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKS 58
Query: 141 QAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVS 200
+ G+ + + V ELVKL+ V K + VI+ GLQG GKTT
Sbjct: 59 AIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTC 118
Query: 201 AKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260
+KLA Y +++G L+ D +R A DQL + +P Y + TE+ P IA +G+E+
Sbjct: 119 SKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178
Query: 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI 320
K +N +++IVDT+GR + + ++ +E+ V + P ++ V+DA GQ A F
Sbjct: 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD 238
Query: 321 EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
++ + I+TKLDG ++GG ALS + PI +G GE ++D EPF ++LGMG
Sbjct: 239 KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMG 298
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G
Sbjct: 299 DIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGT 357
Query: 441 --ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQV 495
++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V
Sbjct: 358 DFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDV 417
Query: 496 SQLVAQ---LFQMRVRMKNLMGVMEGGSL 521
+L+ Q QM +M + G+ +GG +
Sbjct: 418 QELLTQYTKFAQMVKKMGGIKGLFKGGDM 446
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 10/253 (3%)
Query: 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRP 183
ADV + R+ + ++E A + +R + L ++++E+ +++ L P
Sbjct: 44 ADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAP 99
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243
VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 100 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA 159
Query: 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PT 297
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 160 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 219
Query: 298 EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 357
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 220 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 279
Query: 358 GERMEDLEPFYPD 370
GER+EDL PF D
Sbjct: 280 GERIEDLRPFKAD 292
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 10/253 (3%)
Query: 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRP 183
ADV + R+ + ++E A + +R + L ++++E+ +++ L P
Sbjct: 43 ADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAP 98
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243
VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 99 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA 158
Query: 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PT 297
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 159 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 218
Query: 298 EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 357
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 219 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 278
Query: 358 GERMEDLEPFYPD 370
GER+EDL PF D
Sbjct: 279 GERIEDLRPFKAD 291
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 10/253 (3%)
Query: 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRP 183
ADV + R+ + ++E A + +R + L ++++E+ +++ L P
Sbjct: 238 ADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAP 293
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243
VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA 353
Query: 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PT 297
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 354 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 413
Query: 298 EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 357
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 414 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 473
Query: 358 GERMEDLEPFYPD 370
GER+EDL PF D
Sbjct: 474 GERIEDLRPFKAD 486
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 10/253 (3%)
Query: 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRP 183
ADV + R+ + ++E A + +R + L ++++E+ +++ L P
Sbjct: 38 ADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAP 93
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243
VIL+ G+ GVGKTT KLA ++QGKS ML AGD +R AA++QL + G++ +PV
Sbjct: 94 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA 153
Query: 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PT 297
T + + ++ AK +N+DV+I DTAGRLQ +M+ELK + RV+ P
Sbjct: 154 QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 213
Query: 298 EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 357
EV+L +DA TGQ A + F+ +G+TG LTKLDG ++GG SV + G PI+ +G
Sbjct: 214 EVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGV 273
Query: 358 GERMEDLEPFYPD 370
GER+EDL PF D
Sbjct: 274 GERIEDLRPFKAD 286
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 160/265 (60%), Gaps = 2/265 (0%)
Query: 114 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 173
+++++++L+ ADV++ +V + E+ + + +KIV DEL L GG+
Sbjct: 29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDK 88
Query: 174 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 233
V P VI+L G+QG GKTT + KLA + KK+G LV DVYRPAA++QL L
Sbjct: 89 EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 234 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVK 291
G+Q+GVPVY E IAK+G+E+ + ++++IVDTAGR + A+++E+K++
Sbjct: 149 GQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208
Query: 292 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351
+ P EV LV+DA GQ+A L + FN I I+TK+DG ++GG ALS +G
Sbjct: 209 EAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGAT 268
Query: 352 IKLVGRGERMEDLEPFYPDRMAGRI 376
IK +G GE++++LE F P R R+
Sbjct: 269 IKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 159/265 (60%), Gaps = 2/265 (0%)
Query: 114 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 173
+++++++L+ ADV++ +V + E+ + + +KIV DEL L GG+
Sbjct: 29 IKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDK 88
Query: 174 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 233
V P VI+L G+QG GK T + KLA + KK+G LV DVYRPAA++QL L
Sbjct: 89 EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 234 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVK 291
G+Q+GVPVY E IAK+G+E+ + ++++IVDTAGR + A+++E+K++
Sbjct: 149 GQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208
Query: 292 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351
+ P EV LV+DA GQ+A L + FN I I+TK+DG ++GG ALS +G
Sbjct: 209 EAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGAT 268
Query: 352 IKLVGRGERMEDLEPFYPDRMAGRI 376
IK +G GE++++LE F P R R+
Sbjct: 269 IKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 146/262 (55%), Gaps = 4/262 (1%)
Query: 121 LLEADVSLPVVRRFVQAVSEQAVG----VGLIRGVRPDQQLVKIVRDELVKLMGGEVSEL 176
LLEADV+L VV + + ++ VG +G +G ++ + + V + L ++ E
Sbjct: 63 LLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEE 122
Query: 177 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ 236
+ +P VI+ G G GKTT AKLAN+LK G S ++ A D +R AI+QL ++
Sbjct: 123 IRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKR 182
Query: 237 VGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP 296
+GV V P+ +A ++ AK + +DVV++DTAGR + ++ +MDE+K + RV P
Sbjct: 183 IGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKP 242
Query: 297 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 356
V+ V DA+ G FN + I G ILTKLD D+RGGAALS+ V PI VG
Sbjct: 243 NLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVG 302
Query: 357 RGERMEDLEPFYPDRMAGRILG 378
G+ +DL PF + RI G
Sbjct: 303 VGQGYDDLRPFEKEWFLERIFG 324
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 143/262 (54%), Gaps = 4/262 (1%)
Query: 121 LLEADVSLPVVRRFVQAVSEQAVG----VGLIRGVRPDQQLVKIVRDELVKLMGGEVSEL 176
LLEADV+L VV + + ++ VG +G +G ++ + + V + L ++ E
Sbjct: 63 LLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEE 122
Query: 177 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ 236
+ +P VI G G GKTT AKLAN+LK G S ++ A D +R AI+QL ++
Sbjct: 123 IRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKR 182
Query: 237 VGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP 296
+GV V P+ +A ++ AK + +DVV++DTAGR + ++ + DE K + RV P
Sbjct: 183 IGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLXDEXKKIARVTKP 242
Query: 297 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 356
V+ V DA+ G FN + I G ILTKLD D+RGGAALS+ V PI VG
Sbjct: 243 NLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVG 302
Query: 357 RGERMEDLEPFYPDRMAGRILG 378
G+ +DL PF + RI G
Sbjct: 303 VGQGYDDLRPFEKEWFLERIFG 324
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 152/286 (53%), Gaps = 12/286 (4%)
Query: 102 EETLTKENIVEPMR---DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLV 158
+E L N+ E R ++ ALL +D + R V+ + E + L G L
Sbjct: 75 DELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALK 134
Query: 159 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218
+ V + L K +EL +P VI++ G+ G GKTT KLA+ LK +G ++ A
Sbjct: 135 ESVLEMLAK--KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192
Query: 219 GDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277
GD +R AA DQL I E+ G + A G + K + + + ++ K++ DVV+ DT+GRL
Sbjct: 193 GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRL 252
Query: 278 QIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 331
+ ++M+EL K+ + P E+LLV+D TG FN +GITG ILTK
Sbjct: 253 HTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTK 312
Query: 332 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 377
LDG +RGG +SV E G P+K +G GE +EDL+PF P+ I
Sbjct: 313 LDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 358
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 152/286 (53%), Gaps = 12/286 (4%)
Query: 102 EETLTKENIVEPMR---DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLV 158
+E L N+ E R ++ ALL +D + R V+ + E + L G L
Sbjct: 18 DELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALK 77
Query: 159 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218
+ V + L K +EL +P VI++ G+ G GKTT KLA+ LK +G ++ A
Sbjct: 78 ESVLEMLAK--KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135
Query: 219 GDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277
GD +R AA DQL I E+ G + A G + K + + + ++ K++ DVV+ DT+GRL
Sbjct: 136 GDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRL 195
Query: 278 QIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 331
+ ++M+EL K+ + P E+LLV+D TG FN +GITG ILTK
Sbjct: 196 HTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTK 255
Query: 332 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 377
LDG +RGG +SV E G P+K +G GE +EDL+PF P+ I
Sbjct: 256 LDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 154/278 (55%), Gaps = 16/278 (5%)
Query: 102 EETLTKENIVEP---MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLV 158
+E LT N+ E + ++ LL +D + V + + + L G Q+
Sbjct: 34 DELLTYWNLDESESILDELEEVLLVSDFGPKTALKIVDTIRKDILAGRLKSG----PQIK 89
Query: 159 KIVRDELVKLMGGEVS--ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML 216
+ ++ + KL+ V+ EL SRP V+++ G+ G GKTT KLAN KK+G ++
Sbjct: 90 EALKKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLM 149
Query: 217 VAGDVYRPAAIDQLVILGEQVGVPVYTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 275
AGD +R AA +QL + ++ G + A G + +P+ + Q + A +++ DVV+ DT+G
Sbjct: 150 AAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSG 209
Query: 276 RLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL 329
RL + +M+EL+ KR ++ P EVLLV+D TG A FN IG+TG IL
Sbjct: 210 RLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFIL 269
Query: 330 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF 367
TKLDG +RGG +SV + P+K VG GE ++DL+PF
Sbjct: 270 TKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQPF 307
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 6/194 (3%)
Query: 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242
P VI++ G+ G GKTT KLA +GKS +L A D +R AAI+QL I GE+VG V
Sbjct: 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163
Query: 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------P 296
+ P+ +A + A +N DVVI+DTAGRL K +M+EL+ V RV+ P
Sbjct: 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAP 223
Query: 297 TEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVG 356
E LLV+DA TGQ F + +TG ILTKLDG ++GG L++ G PIK +G
Sbjct: 224 HETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIG 283
Query: 357 RGERMEDLEPFYPD 370
GE+ EDL PF P+
Sbjct: 284 VGEKAEDLRPFDPE 297
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 196 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 114 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 173
Query: 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 309
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 174 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 233
Query: 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 369
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 234 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 293
Query: 370 D 370
+
Sbjct: 294 E 294
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 196 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 115 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 174
Query: 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 309
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 234
Query: 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 369
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 294
Query: 370 D 370
+
Sbjct: 295 E 295
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 196 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 94 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 153
Query: 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 309
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 154 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 213
Query: 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 369
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 214 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 273
Query: 370 D 370
+
Sbjct: 274 E 274
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 196 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255
KTT AKL Y + GK M AGD +R A QL G+++ +PV P+ +A
Sbjct: 95 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 154
Query: 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 309
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 155 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 214
Query: 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 369
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 215 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 274
Query: 370 D 370
+
Sbjct: 275 E 275
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Query: 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-----VI 232
F ++R + +L G+ G GKTT AK+ANY + G ++ A D +R A QL
Sbjct: 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR 159
Query: 233 LGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292
L +V + V P+ + +++AK++N D++++DTAGRLQ +M EL+ + +
Sbjct: 160 LNNKVDL-VKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNK 218
Query: 293 VLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKE 346
++ P EVLLV+DA TGQ F+ ++G ILTK+D S+GG L++KE
Sbjct: 219 IIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKE 278
Query: 347 VSGKPIKLVGRGERMEDLEPFYPDR 371
+ PIK++G GE+++DL F D+
Sbjct: 279 LLNIPIKMIGVGEKVDDLLAFDIDQ 303
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 196 KTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255
KTT AKL Y + GK M AGD +R A QL G+++ +PV + +A
Sbjct: 115 KTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAY 174
Query: 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 309
++ K + D++ VDTAGRL +M+ELK VKR + P EV LV+DA+TGQ
Sbjct: 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ 234
Query: 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYP 369
F+ +G+TG I+TKLDG ++GG + + PIK VG GE +DL+PF P
Sbjct: 235 NGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDP 294
Query: 370 D 370
+
Sbjct: 295 E 295
>pdb|1HQ1|A Chain A, Structural And Energetic Analysis Of Rna Recognition By A
Universally Conserved Protein From The Signal
Recognition Particle
Length = 105
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 5/99 (5%)
Query: 410 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 467
FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +E
Sbjct: 2 FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKE 60
Query: 468 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 506
R KPE++ S R++R+A SG Q V++L+ Q M+
Sbjct: 61 RAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQ 97
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 186 ILLAGLQGVGKTTVSAKLA--NYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243
I+L G G GKTT AKLA + L+K K + D YR AA++QL E + P+
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEV 166
Query: 244 AGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLL 301
T K+ ++AK+ D V VDTAGR D +DELK+ + + L
Sbjct: 167 CYT--------KEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFL 218
Query: 302 VVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM 361
V+ A E + + + I TK+D + G+ ++ S + + G+ +
Sbjct: 219 VLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNV 278
Query: 362 -EDLEPFYP 369
ED++ P
Sbjct: 279 PEDIQTVSP 287
>pdb|2PXB|A Chain A, Variant 2 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXD|A Chain A, Variant 1 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXE|A Chain A, Variant 4 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXF|A Chain A, Variant 5 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXK|A Chain A, Variant 8 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXL|A Chain A, Variant 9 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXP|A Chain A, Variant 13 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXQ|A Chain A, Variant 14 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXT|A Chain A, Variant 15 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXU|A Chain A, Variant 16 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
pdb|2PXV|A Chain A, Variant 6 Of Ribonucleoprotein Core Of The E. Coli Signal
Recognition Particle
Length = 102
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 410 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 467
FD NDFL+Q R + G + + G +PG G+I P V+ +K L EA+I + T +E
Sbjct: 1 FDLNDFLEQLRQMKNXGGXASLXGKLPGXGQI-PDNVKSQXDDKVLVRXEAIINSXTXKE 59
Query: 468 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502
R KPE++ S R++R+A SG Q V++L+ Q
Sbjct: 60 RAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 92
>pdb|3LQX|A Chain A, Srp Ribonucleoprotein Core Complexed With Cobalt Hexammine
Length = 105
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 410 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEE 467
FD NDFL+Q R G + + G +PG G+I P V+ +K L EA+I + T +E
Sbjct: 2 FDLNDFLEQLRQXKNXGGXASLXGKLPGXGQI-PDNVKSQXDDKVLVRXEAIINSXTXKE 60
Query: 468 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502
R KPE++ S R++R+A SG Q V++L+ Q
Sbjct: 61 RAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 93
>pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary S-Domain Complex
Of Human Signal Recognition Particle
Length = 129
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 408 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTP 465
F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M
Sbjct: 13 GQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMND 72
Query: 466 EEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 515
+E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+
Sbjct: 73 QELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 125
>pdb|1QB2|A Chain A, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
pdb|1RY1|W Chain W, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
pdb|2GO5|W Chain W, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 109
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 410 FDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEE 467
F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E
Sbjct: 2 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE 61
Query: 468 REKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQ 501
+ + + ++ P R +RVA+ SG + + V +L+ Q
Sbjct: 62 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQ 98
>pdb|2JQE|A Chain A, Soution Structure Of Af54 M-Domain
Length = 119
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 408 ANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGKITPAQVRE-AEKSLKIMEAMIEAMTP 465
F D KQ + +MG + ++ M+P G+G V E ++ +K ++++MT
Sbjct: 8 GTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTE 67
Query: 466 EEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
EE P+++ S +R R+A SG + Q+V +L+
Sbjct: 68 EELLNPKIIDSSRIR--RIAIGSGTSPQEVKELL 99
>pdb|2XKV|C Chain C, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 69
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 450 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 509
+K L MEA+I +MT +ER KPE++ S R++R+A SG Q V++L+ Q M+ M
Sbjct: 9 QKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGSGMQVQDVNRLLKQFDDMQRMM 66
Query: 510 KNL 512
K +
Sbjct: 67 KKM 69
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
R I L GL G GKTTVS L YL G C + GD R
Sbjct: 32 RGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 73
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
R + L GL G GKTTVS L YL G C + GD R
Sbjct: 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
R + L GL G GKTTVS L YL G C + GD R
Sbjct: 31 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 72
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 40/187 (21%)
Query: 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242
PT++++ GL GKT +S KL YL
Sbjct: 3 PTMVIMVGLPARGKTYISTKLTRYLN---------------------------------- 28
Query: 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTE-VL 300
GT K + + E KN + + D LQI K + LKDV L+ E +
Sbjct: 29 FIGTPTKVFNLGQYRREAVSYKNYEFFLPDNMEALQIRKQCALAALKDVHNYLSHEEGHV 88
Query: 301 LVVDAM-TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVS-GKPIKL-VGR 357
V DA T +E +L+ F E G + + D G A ++++V G P + R
Sbjct: 89 AVFDATNTTRERRSLILQFAKEHGYKVFFIESICNDP-GIIAENIRQVKLGSPDYIDCDR 147
Query: 358 GERMEDL 364
+ +ED
Sbjct: 148 EKVLEDF 154
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
V+ L GL G GKTT++ +LA+ L+K+G ++ GD R
Sbjct: 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
R + L GL G GKTTVS L YL G C + GD R
Sbjct: 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220
F ++ P + G GVGKT++S A L +QGK +LV+ D
Sbjct: 3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 120 ALLEADVS-LPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG--EVSEL 176
A L AD++ LP F+Q V+ VGV + + Q + DE ++ +S L
Sbjct: 261 ANLPADLAGLPTDTLFLQPVN--MVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSAL 318
Query: 177 V--FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226
V A++ +I+L G GVGKTT++A +A L G L D PAA
Sbjct: 319 VDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAA 367
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
VI + GL G GK+T++ L L ++GK C ++ GD R
Sbjct: 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
R + L GL G GKTT+S L YL C + GD R
Sbjct: 21 RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVR 62
>pdb|1DUL|A Chain A, Structure Of The Ribonucleoprotein Core Of The E. Coli
Signal Recognition Particle
Length = 69
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 450 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502
+K L EA+I + T +ER KPE++ S R++R+A SG Q V++L+ Q
Sbjct: 9 QKVLVRXEAIINSXTXKERAKPEIIKGS--RKRRIAAGSGXQVQDVNRLLKQF 59
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230
PTVI++ GL GKT +S KL YL G + YR A+ Q
Sbjct: 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225
+I+L GL GVGK+T S LA L K +++ D+ R +
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225
+I+L GL GVGK+T S LA L K +++ D+ R +
Sbjct: 13 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 53
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220
T+ GVGKTT+S +A+Y QGK + V D
Sbjct: 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223
+ L GL GK+T++ LA L+ +G+ L+ GDV R
Sbjct: 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225
+ + +G GVGK+TV+A LA + KQGK ++ D P+
Sbjct: 21 IAVXSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPS 61
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 159 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218
K V DE +K G++ KSR + + +G GVGK+TV+A LA + +QGK ++
Sbjct: 3 KRVTDEEIKERLGKI------KSR--IAVXSGKGGVGKSTVTALLAVHYARQGKKVGILD 54
Query: 219 GDVYRPA 225
D P+
Sbjct: 55 ADFLGPS 61
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 183 PTVILLAGLQGVGKTTVSAKLANYLKKQG 211
PT+I++ GL GKT +S KL YL G
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 183 PTVILLAGLQGVGKTTVSAKLANYLKKQG 211
PT+I++ GL GKT +S KL YL G
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDVYR 223
+ GL G GK+T++ LA L + G C+ L+ GD+ R
Sbjct: 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 317 TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEP--FYPDRMAG 374
+ + IG +G+ + +G+ G V +G + + +GER+E+ P + P+ +
Sbjct: 181 SLDYPIGTSGSPIVNSNGEIIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKK 240
Query: 375 RILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGM 434
R L + D+ K + ++ Q + +QK++ +A L TR VA M+ +
Sbjct: 241 RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTA------VLAPTRVVA--AEMAEALRG 292
Query: 435 IPGMGKITPAQVREAEKSLKIMEAMIEA 462
+P + +TPA RE + +I++ M A
Sbjct: 293 LP-VRYLTPAVQREHSGN-EIVDVMCHA 318
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 183 PTVILLAGLQGVGKTTVSAKLANYLKKQG 211
PT+I++ GL GKT +S KL YL G
Sbjct: 38 PTLIVMVGLPARGKTYISKKLTRYLNFIG 66
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 193 GVGKTTVSAKLANYLKKQGKSCMLV 217
GVGKTT + LA YL + GK +LV
Sbjct: 17 GVGKTTTAINLAAYLARLGKRVLLV 41
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 193 GVGKTTVSAKLANYLKKQGKSCMLV 217
GVGKTT + LA YL + GK +LV
Sbjct: 17 GVGKTTTAINLAAYLARLGKRVLLV 41
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 154 DQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS 213
D+Q + D L +L+ G+ A PT LL G G GKT++ + A + + QG +
Sbjct: 9 DKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRS--AIFEETQG-N 60
Query: 214 CMLVAGDVYR--PAAIDQLVILGEQVGV----PVYTAGTEVKPSQIAKQGLE---EAKKK 264
+++ D ++ D+LV L E+ V P TE S+++ QG E +
Sbjct: 61 VIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGR 120
Query: 265 NVDVVIVDTAGRLQ 278
DV I TA LQ
Sbjct: 121 TTDVPI-QTATMLQ 133
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 185 VILLAGLQG-VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225
+I +A +G VGKTT + L+ YL QG++ +L+ GD R A
Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLALQGET-LLIDGDPNRSA 42
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPV 241
L+ G G GKT SA + +L +QG +LV P+ A+DQL Q G+ V
Sbjct: 199 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTGLKV 251
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPV 241
L+ G G GKT SA + +L +QG +LV P+ A+DQL Q G+ V
Sbjct: 198 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTGLKV 250
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA--AIDQLVILGEQVGVPV 241
L+ G G GKT SA + +L +QG +LV P+ A+DQL Q G+ V
Sbjct: 375 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA----PSNIAVDQLTEKIHQTGLKV 427
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLV 231
T+ + +G G GKTT++A L L + G +V D+ P + Q V
Sbjct: 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTL-QNV 62
Query: 232 ILGE-QVGVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVV---IVDTAGRLQIDKAMMD 285
+ GE ++ +Y G +V P+ ++ +GL +A + ++ V I+++ L +D
Sbjct: 63 LAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGL 122
Query: 286 ELKDVKRVLNPTEVLLVVD 304
E V + E+LLVV+
Sbjct: 123 ERSAVIAIAAAQELLLVVN 141
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCML 216
I G+ G GK+T LA YL+K+GK +L
Sbjct: 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 108 ENIVEPMRDIRRALLEADVSLPVV-RRFVQAVSEQ--------AVGVGLIRGVRPDQQLV 158
EN+V M ++ A+ +AD+ + V+ +F+ + ++ A+G+ LI+G+ + +
Sbjct: 73 ENVV-AMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDEGPEGL 131
Query: 159 KIVRDELVKLMGGEVSELVFAK 180
K++ D + + MG ++S L+ A
Sbjct: 132 KLISDIIREKMGIDISVLMGAN 153
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 175 ELVFAKSRPTVILLAGLQGVGKTTVSAKLANY-LKKQGKSCMLVA 218
E+++AK + T L+ G+GKT ++ +A Y L K G +++A
Sbjct: 15 EVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 174 SELVFAKSRP---TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224
S ++FA ++++ + G GK+T++A LA + G ++V GD+ +P
Sbjct: 71 SNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP 124
>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
Length = 195
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQG 211
+I G+ G GKTT + KL YLK++G
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221
+++G G GKTTV+A L+ L +G+ + V GD+
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217
+++ +G GVGKTT SA +A L ++GK +++
Sbjct: 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221
+++G G GKTTV+A L+ L + G+ + V GD+
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGDL 41
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 191 LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI----DQLVILGEQVGVPVYTAG 245
L G+ +A NY + +G C+ ++ AA +Q++ + E VP G
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130
Query: 246 TEVKPSQIAKQGLEEAKKK----NVDVVIVDTAGRLQIDKAMMDELKDVK 291
+ + +EEAK + NV+ V R +DK D +++++
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 191 LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI----DQLVILGEQVGVPVYTAG 245
L G+ +A NY + +G C+ ++ AA +Q++ + E VP G
Sbjct: 59 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 118
Query: 246 TEVKPSQIAKQGLEEAKKK----NVDVVIVDTAGRLQIDKAMMDELKDVK 291
+ + +EEAK + NV+ V R +DK D +++++
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,395,802
Number of Sequences: 62578
Number of extensions: 546035
Number of successful extensions: 2260
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 2096
Number of HSP's gapped (non-prelim): 143
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)