BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008282
(571 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/572 (80%), Positives = 510/572 (89%), Gaps = 9/572 (1%)
Query: 1 MEAVQFSTVASRHYSATSKTFYNSRISAGKSAKFVSSWAASSDPARLSSTSRNLFTRETW 60
MEA+QFS+V T N RI A S+ F + + A LSS SRNL TRE W
Sbjct: 1 MEALQFSSV--NRVPCTLSCTGNRRIKAAFSSAFT---GGTINSASLSS-SRNLSTREIW 54
Query: 61 GLINSKSVTIRRNGR-RRLIVRAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRR 119
+ SK+V +GR RR VRAEMFGQLT GLEAAW+KLKGEE LTK+NI EPMRDIRR
Sbjct: 55 SWVKSKTVV--GHGRYRRSQVRAEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRR 112
Query: 120 ALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFA 179
ALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEVSEL FA
Sbjct: 113 ALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFA 172
Query: 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 239
KS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAIDQLVILGEQVGV
Sbjct: 173 KSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGV 232
Query: 240 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEV 299
PVYTAGT+VKP+ IAKQGL+EAKK NVDVVI+DTAGRLQIDK MMDELKDVK+ LNPTEV
Sbjct: 233 PVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEV 292
Query: 300 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 359
LLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE
Sbjct: 293 LLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGE 352
Query: 360 RMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQT 419
RMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQT
Sbjct: 353 RMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQT 412
Query: 420 RTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 479
R VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP
Sbjct: 413 RAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPE 472
Query: 480 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPP 539
RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVMEGGS+PALS LEDALK+EQKAPP
Sbjct: 473 RRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPP 532
Query: 540 GTARRKRRSESRRQFVDPASTRPSPRGFGGGS 571
GTARRKR+++SR++FV+ AS++P PRGFG G+
Sbjct: 533 GTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/423 (56%), Positives = 320/423 (75%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V ++A+
Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G +I GV P QQ +KIV DELV LMG L A+ PTVIL+AGLQG GKTT +AKL
Sbjct: 61 GADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A YL+KQ +S ++VA DVYRPAAIDQL LG+Q+ VPV+ G++ P +IA+QG+E+AK+
Sbjct: 121 ALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKE 180
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
VD V++DTAGRLQID MM EL ++K+V+ P + LLVVDAMTGQEAA L TF+ +IG
Sbjct: 181 LGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIG 240
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
ITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL
Sbjct: 241 ITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVL 300
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
+ VEKAQE + D E++Q KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++
Sbjct: 301 TLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSS 360
Query: 444 AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLF 503
+ + EK LK EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E VS+L+
Sbjct: 361 GDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFT 420
Query: 504 QMR 506
+MR
Sbjct: 421 KMR 423
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 488 bits (1257), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/410 (58%), Positives = 317/410 (77%), Gaps = 1/410 (0%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V E+AV
Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G +I G+RPDQQ +K+V DELV++MG L A PTVIL+AGLQG GKTT +AKL
Sbjct: 61 GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A +L+K+G+S +LVA DVYRPAAIDQL+ LG+Q+ VPV+ G++ P +IA+QG+E+A++
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 180
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ +D VIVDTAGRLQID MM+EL VK + P EVLLVVD+M GQEAA+L +F+ IG
Sbjct: 181 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG 240
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
ITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL
Sbjct: 241 ITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVL 300
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKIT 442
+ VEKAQE + D E+MQ+KI++A FDF DFLKQ R + MGS++ I +IPG+ GKI
Sbjct: 301 TLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKIN 360
Query: 443 PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTE 492
Q+R+ E+ LK +EAMI +MTP+ER P+LL+ SP RR R+A+ G+TE
Sbjct: 361 DEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTE 410
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/437 (46%), Positives = 301/437 (68%), Gaps = 9/437 (2%)
Query: 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVG 144
F LT L+ + L+G+ L+++++ E ++IR ALLEADV+LPVV+ F++ V ++AVG
Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62
Query: 145 VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 204
+I + P QQ++KIV +EL ++G E +E+ + PT+I++ GLQG GKTT + KLA
Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLA 122
Query: 205 NYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
N L K++ +++A D+YRPAAIDQL LG+Q+ VPV+ GTE +I QGL +AK+
Sbjct: 123 NKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAKE 182
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
D V++DTAGRLQID+ +M EL+D+K + NP E+LLVVD+M GQEAA + FN ++
Sbjct: 183 NRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLE 242
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG ILTK+DGD+RGGAALSV++++GKPIK G GE++ D+E F+PDRM+ RILGMGD+L
Sbjct: 243 VTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLL 302
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
+ +EKA + ++ + E+ +K+ +FDFNDF++Q V MGSM ++ MIPGM P
Sbjct: 303 TLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMAN-NP 361
Query: 444 --AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ 501
A V+ E + A++ +MTPEERE P+LL +P RR+R+A SG T V++ +
Sbjct: 362 ALANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKD 419
Query: 502 LFQMRVRMKNLMGVMEG 518
Q + K + GVM G
Sbjct: 420 FNQAK---KMMQGVMSG 433
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/436 (47%), Positives = 318/436 (72%), Gaps = 4/436 (0%)
Query: 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVG 144
F L L+ +K++G+ ++++++ E MR++R ALLEADV+ VV+ FV+ VSE+AVG
Sbjct: 3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVG 62
Query: 145 VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 204
+++ + P QQ++K+V++EL +LMGGE S++ AK PTVI++ GLQG GKTT S KLA
Sbjct: 63 QDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLA 122
Query: 205 NYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
N L KK + MLVA D+YRPAAI QL LG+Q+ +PV++ G +V P +IAKQ +E+AK+
Sbjct: 123 NLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKE 182
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
++ D VI+DTAGRL ID +MDEL +VK + NP E+ LVVD+MTGQ+A + +FN ++G
Sbjct: 183 EHYDYVILDTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLG 242
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG +LTKLDGD+RGGAALS++ V+ PIK G GE+++ LEPF+P+RMA RILGMGDVL
Sbjct: 243 LTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVL 302
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
+ +EKAQ + ++ A+E+++K+ + +F +DFL+Q V MG + ++ M+PG GK+
Sbjct: 303 TLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKG 362
Query: 444 AQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502
+ ++ EK L +EA+I++MT E+E+P+++ S RRKR+A+ SG + Q+V++L+ Q
Sbjct: 363 LKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQF 420
Query: 503 FQMRVRMKNLMGVMEG 518
+M+ MK + + +G
Sbjct: 421 DEMKKMMKQMTNMSKG 436
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/427 (48%), Positives = 282/427 (66%), Gaps = 7/427 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AV
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 204 ANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
+L+ K K ++V+ DVYRPAAI QL L EQVGV + + KP I L+EAK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV++VDTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
LS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
Query: 442 TPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+
Sbjct: 361 -PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLL 417
Query: 500 AQLFQMR 506
Q M+
Sbjct: 418 KQFDDMQ 424
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/427 (48%), Positives = 282/427 (66%), Gaps = 7/427 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AV
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 204 ANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
+L+ K K ++V+ DVYRPAAI QL L EQVGV + + KP I L+EAK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV++VDTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
LS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
Query: 442 TPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+
Sbjct: 361 -PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLL 417
Query: 500 AQLFQMR 506
Q M+
Sbjct: 418 KQFDDMQ 424
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/427 (48%), Positives = 282/427 (66%), Gaps = 7/427 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AV
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 204 ANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
+L+ K K ++V+ DVYRPAAI QL L EQVGV + + KP I L+EAK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV++VDTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
LS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
Query: 442 TPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+
Sbjct: 361 -PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLL 417
Query: 500 AQLFQMR 506
Q M+
Sbjct: 418 KQFDDMQ 424
>sp|O33013|SRP54_MYCLE Signal recognition particle protein OS=Mycobacterium leprae (strain
TN) GN=ffh PE=3 SV=1
Length = 521
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/440 (46%), Positives = 286/440 (65%), Gaps = 9/440 (2%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L++ L L+G+ LT +I R+IR AL EADVSLPVVR FV + E+A
Sbjct: 1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERAR 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + P QQ+VKIV +EL+ ++GGE +L FAK+ PTV++LAGLQG GKTT++ KL
Sbjct: 61 GTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ-------IAKQ 256
A L++QG + +LVA D+ RPAA++QL ++GE+ GVPV+ P +A
Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180
Query: 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 316
GL EA+ K+ DVVIVDTAGRL ID +M + ++ +NP EVL V+DAM GQ+A
Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 317 TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 376
F +G TG +LTKLDGD+RGGAALSV+EV+G PI GE+++D + F+PDRMA RI
Sbjct: 241 AFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300
Query: 377 LGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP 436
LGMGDVLS +E+A++V E AE KI++ DFL+Q V +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLP 360
Query: 437 GMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVS 496
G G++ + +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+
Sbjct: 361 GAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 497 QLVAQLFQMRVRMKNLMGVM 516
QLV + F+ R M +++G M
Sbjct: 419 QLVDRFFEARKMMSSVLGGM 438
>sp|P66844|SRP54_MYCTU Signal recognition particle protein OS=Mycobacterium tuberculosis
GN=ffh PE=1 SV=1
Length = 525
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 286/440 (65%), Gaps = 9/440 (2%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + E+A
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + P QQ+VKIV +EL+ ++GGE EL FAK+ PTV++LAGLQG GKTT++ KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ-------IAKQ 256
A L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+ P +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 316
GL EA+ K+ DVVIVDTAGRL ID+ +M + ++ +NP EVL V+DAM GQ+A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 317 TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 376
F +G TG LTKLDGD+RGGAALSV+EV+G PI GE++ED + F+PDRMA RI
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 377 LGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP 436
LGMGDVLS +E+A++V + AEE KI + DFL+Q V +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLP 360
Query: 437 GMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVS 496
G ++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+
Sbjct: 361 GAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 497 QLVAQLFQMRVRMKNLMGVM 516
QLV + F+ R M +++G M
Sbjct: 419 QLVERFFEARKMMSSMLGGM 438
>sp|P66845|SRP54_MYCBO Signal recognition particle protein OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=ffh PE=3 SV=1
Length = 525
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 286/440 (65%), Gaps = 9/440 (2%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + E+A
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + P QQ+VKIV +EL+ ++GGE EL FAK+ PTV++LAGLQG GKTT++ KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQ-------IAKQ 256
A L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+ P +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 316
GL EA+ K+ DVVIVDTAGRL ID+ +M + ++ +NP EVL V+DAM GQ+A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 317 TFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 376
F +G TG LTKLDGD+RGGAALSV+EV+G PI GE++ED + F+PDRMA RI
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 377 LGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP 436
LGMGDVLS +E+A++V + AEE KI + DFL+Q V +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLP 360
Query: 437 GMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVS 496
G ++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+
Sbjct: 361 GAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 497 QLVAQLFQMRVRMKNLMGVM 516
QLV + F+ R M +++G M
Sbjct: 419 QLVERFFEARKMMSSMLGGM 438
>sp|Q92J55|SRP54_RICCN Signal recognition particle protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ffh PE=3 SV=1
Length = 449
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/432 (44%), Positives = 281/432 (65%), Gaps = 8/432 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L ++KL LT+ I MRDIR ALLE+DV+LPV++ F+ V ++A+
Sbjct: 1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE--LVFAKSRPTVILLAGLQGVGKTTVSA 201
G +I+ V P Q ++KI+ +E++ L+ SE L P L+ GLQG GKTT S+
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASS 120
Query: 202 KLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261
KLA L+ Q K +LV+ D YRPAA +QL IL V + KP I K+ + EA
Sbjct: 121 KLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEA 180
Query: 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIE 321
K DVVI DTAGR QIDKAMM+E +K+++ PTE LLV+D+MTGQ+A ++FN +
Sbjct: 181 KISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEK 240
Query: 322 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
+ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE + DLE F +R+A RIL MGD
Sbjct: 241 LAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGD 300
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI
Sbjct: 301 IISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 442 TPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQL 498
Q+ +++ + KI+ EA+I +MTP+ER+ P+++ S RRKR+A +G T Q+V+ L
Sbjct: 361 MD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNIL 417
Query: 499 VAQLFQMRVRMK 510
+ Q Q+ MK
Sbjct: 418 LKQYKQISEIMK 429
>sp|Q4UKH4|SRP54_RICFE Signal recognition particle protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ffh PE=3 SV=2
Length = 449
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 278/432 (64%), Gaps = 8/432 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L ++KL LT+ I MRDIR ALLE+DV+LPV++ F+ V ++A+
Sbjct: 1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE--LVFAKSRPTVILLAGLQGVGKTTVSA 201
G +I+ V P Q ++KI+ +E++ L+ SE L P L+ GLQG GKTT S+
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASS 120
Query: 202 KLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261
KLA LK Q K +LV+ D YRPAA +QL IL V + KP I K+ + EA
Sbjct: 121 KLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEA 180
Query: 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIE 321
K VVI DTAGR QIDK MM+E +K+++ PTE LLV+D+MTGQ+A +FN +
Sbjct: 181 KISAYGVVIYDTAGRTQIDKEMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTANSFNEK 240
Query: 322 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
+ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE++ DLE F +R+A RIL MGD
Sbjct: 241 LEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRILDMGD 300
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI
Sbjct: 301 IISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 442 TPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQL 498
Q+ +++ + KI+ EA+I +MT +ERE P+++ S RRKR+A +G T Q+V+ L
Sbjct: 361 MD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNIL 417
Query: 499 VAQLFQMRVRMK 510
+ Q Q+ MK
Sbjct: 418 LKQYKQISEMMK 429
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 352 bits (903), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 188/446 (42%), Positives = 288/446 (64%), Gaps = 15/446 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M LT A KL +T++NI + +R+IR ALLEADV V + F++ + E+ V
Sbjct: 1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVV 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P + ++K V +ELV ++GGE ++L + +L GLQG GKTT K+
Sbjct: 61 GKEVPKNLSPAEFVIKTVYEELVDILGGEKADL-----KKGTVLFVGLQGTGKTTTIGKI 115
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
AN LKK G + + D+ RPAA+ QL L E+VGVP Y + +IA++ ++ AK+
Sbjct: 116 ANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFEEGLGAVEIARRAVKRAKE 175
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
++VD +++DTAGRL +D+ +M EL+++K V NP+E+L V DAM GQ A TF+ +G
Sbjct: 176 ESVDYLLLDTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLG 235
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG ++TK+DGD+RGG ALSVKEV G PIK +G GE++ED+EPFYPDR+A RILG+GD+
Sbjct: 236 LTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQ 295
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
S VEKAQEV+ ++ A+ M K+M+ FD D + R + +MG + +++ MIPG + P
Sbjct: 296 SLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPG---VAP 352
Query: 444 --AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ 501
++ EK K +EA+I +MTPEER P+++ S R+KR+A+ SG T V++L+ +
Sbjct: 353 QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKR 410
Query: 502 LFQMRVRMKNLMGVMEGGSLPALSNL 527
+M+ M+ L + G +PA+ +
Sbjct: 411 YEEMKKMMRKL---QKAGGMPAIPKM 433
>sp|Q9ZDZ0|SRP54_RICPR Signal recognition particle protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ffh PE=3 SV=1
Length = 449
Score = 351 bits (900), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 188/432 (43%), Positives = 281/432 (65%), Gaps = 8/432 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L ++KL LT+ I MRD+R ALLE+DV+LPV++ F++ V ++A+
Sbjct: 1 MFKTLTQNLTKIFDKLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIEEVKQKAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGG--EVSELVFAKSRPTVILLAGLQGVGKTTVSA 201
G +I+ V P Q ++KI+ +E++ L+ ++L P +L+ GLQG GKTT S
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASG 120
Query: 202 KLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261
KLA LK Q K +LV+ D YRPAA +QL I+ V + KP I K+ + EA
Sbjct: 121 KLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAIGEA 180
Query: 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIE 321
+ DVVI DTAGR+QID MM+E +K++LNPTE LLV+D+MTGQ+A TF+ +
Sbjct: 181 QISAYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVITAKTFSEK 240
Query: 322 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
+ I+G IL+++DGD++GGAALSVK + KPIK + GE++ DLE F +R+A RIL MGD
Sbjct: 241 LEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRILDMGD 300
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
++SFV+KA ++ +E+AE+ K+ S FD ND+L+Q R++ +MG ++ M+PG GKI
Sbjct: 301 IISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 442 TPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQL 498
Q+ +++ + KI+ EA+I +MT +ER+ P+++ S RRKR+A +G T Q+V+ L
Sbjct: 361 FD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNIL 417
Query: 499 VAQLFQMRVRMK 510
+ Q Q+ MK
Sbjct: 418 LKQYKQISAVMK 429
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 196/432 (45%), Positives = 276/432 (63%), Gaps = 5/432 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L+ L + G+ LT++NI E +R++R ALLEADV+LPVVR F+ V E A+
Sbjct: 1 MFENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ +KIV+ EL K MG L A P VIL+AGLQG GKTT KL
Sbjct: 61 GEEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKL 120
Query: 204 ANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
A +L+ + K ++V+ DVYRPAAI QL L + VGV + + + P IAK L +AK
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV+IVDTAGRL +D MMDE+K V LNP E L VDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEAL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
+TG ILTK+DGD+RGGAALS+++++GKPIK +G GE+ E LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDV 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
LS +E + + +E AE+M +K +F +DF +Q + +MG M ++ +PG +
Sbjct: 301 LSLIEDLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNL 360
Query: 442 TPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA 500
+ + + + + MEA+I +MT +ER P+++ S RR+R+A SG Q V++L+
Sbjct: 361 SEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLK 418
Query: 501 QLFQMRVRMKNL 512
Q +M+ MK +
Sbjct: 419 QFDEMQRMMKKM 430
>sp|Q1RHD6|SRP54_RICBR Signal recognition particle protein OS=Rickettsia bellii (strain
RML369-C) GN=ffh PE=3 SV=1
Length = 449
Score = 348 bits (894), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 187/432 (43%), Positives = 282/432 (65%), Gaps = 8/432 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L +++L LT+E I +RDIR ALLE+DV+LPV++ FV V ++A+
Sbjct: 1 MFKTLTQNLMKIFDRLVSSGLLTEEQIDAALRDIRVALLESDVALPVIKNFVAEVKQKAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSEL-VFAKSRPTV-ILLAGLQGVGKTTVSA 201
G +I+ V P Q ++KI+ +E++ ++ E+ + ++P V +L+ GLQG GKTT S
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASG 120
Query: 202 KLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261
KLA LK Q K +LV+ D YRPAA +QL IL V + KP I K+ + EA
Sbjct: 121 KLALCLKNQNKKVLLVSLDTYRPAAQEQLEILANSVKINSLPIVKGEKPLDIVKRAMAEA 180
Query: 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIE 321
K D+VI DTAGR QID+ MM+E +K+++ PTE LLV+D+MTGQ+A ++FN +
Sbjct: 181 KLSAYDIVIYDTAGRTQIDQEMMNEAIAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEQ 240
Query: 322 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
+ I+G IL+++DGDS+GGAALSVK ++ +PIK + GE++ DLE F R+A RIL MGD
Sbjct: 241 LEISGLILSRIDGDSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRILDMGD 300
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
++SFVEKA ++ +E AE+ K+ FD ND+L+Q +++ ++G ++ M+PG GKI
Sbjct: 301 IISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKI 360
Query: 442 TPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQL 498
Q+ +++ + KI+ EA+I +MTP+ER P+++ S RRKR+A +G T Q+V+ L
Sbjct: 361 MD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS--RRKRIALGAGTTVQKVNIL 417
Query: 499 VAQLFQMRVRMK 510
+ Q Q+ MK
Sbjct: 418 LKQFKQISDMMK 429
>sp|Q68XJ4|SRP54_RICTY Signal recognition particle protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ffh PE=3 SV=1
Length = 449
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/432 (42%), Positives = 278/432 (64%), Gaps = 8/432 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L +++L LT+ I MRD+R ALLE+DV+LPV++ F+ V ++A+
Sbjct: 1 MFKTLTQNLTKIFDRLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIAEVKQKAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGE--VSELVFAKSRPTVILLAGLQGVGKTTVSA 201
G +I+ V P Q ++KI+ +E++ L+ ++L P +L+ GLQG GKTT S
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTTASG 120
Query: 202 KLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261
KLA LK Q K +LV+ D YRPAA +QL I+ V + +P I K+ + EA
Sbjct: 121 KLALLLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVQGEQPLDIVKRAISEA 180
Query: 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIE 321
K DVVI DTAGR+QID MM+E +K++LNPTE LLV+D+MTGQ+A +F+ +
Sbjct: 181 KIFAYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVVTARSFSDK 240
Query: 322 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
+ I+G IL+++DGD++GGAALSVK ++ KPIK + GE++ DLE F +R+A RIL MGD
Sbjct: 241 LEISGLILSRIDGDTKGGAALSVKYLTQKPIKFLSCGEKLTDLEEFDAERLASRILDMGD 300
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
++SFV+KA ++ +E+AE K+ S FD ND+LK R++ +MG ++ M+PG GKI
Sbjct: 301 IISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKI 360
Query: 442 TPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQL 498
Q+ +++ +I+ EA+I +MT +ER+ P+++ S RRKR+A +G T Q+V+ L
Sbjct: 361 ID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNIL 417
Query: 499 VAQLFQMRVRMK 510
+ Q Q+ MK
Sbjct: 418 LKQYKQISAVMK 429
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 287/429 (66%), Gaps = 13/429 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKL
Sbjct: 61 GKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKL 118
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A Y K +G+ +LVA D RPAA +QL +LGE+VGVPV P I ++ E+A+
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
+ D+++VDTAGRLQID+ +M EL +K VL P EVLLV+DAMTGQEA ++ F+ ++G
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+TG +LTKLDGD+RGGAALS + V+GKPI G E+ E LEPFYP+R+AGRILGMGDV
Sbjct: 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVA 298
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
S EK + + +A + K++ DFLKQ + + R+G S ++G++PG+ P
Sbjct: 299 SLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----P 349
Query: 444 AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLF 503
++ EK++K +EA++ +MTPEER+ P +L S RRKR+A+ SG + Q+V++ +
Sbjct: 350 QGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFE 407
Query: 504 QMRVRMKNL 512
+M+ MK+L
Sbjct: 408 EMKALMKSL 416
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 179/441 (40%), Positives = 277/441 (62%), Gaps = 21/441 (4%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQ-- 141
MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q
Sbjct: 1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 142 AVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVS 200
A G+G QQ + + L++++ + S FA++ PTV+L+AGLQG GKTT +
Sbjct: 59 AGGIG-------KQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTT 111
Query: 201 AKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260
AKLA+YLK + K +L A D+ R AA++QL +LGEQVGV V+ + +IA L+
Sbjct: 112 AKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFHEENK-SVKEIANNALKR 170
Query: 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI 320
AK+ DV+IVD+AGRL IDK +M ELK+VK VLNP EVL V DA++GQ+ TFN
Sbjct: 171 AKEAQFDVLIVDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNE 230
Query: 321 EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
EIG++G +L+K D DS+GG AL + G P++ +G GE++ DL+ F P+R+ GR++G G
Sbjct: 231 EIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAG 290
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D++S EK V+ +A+++ KK+ F FNDFL Q V ++GSMS +I MIPG+G
Sbjct: 291 DIISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGN 350
Query: 441 ITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQ 497
+ A + + E SL++ ++AM+ +MT +ERE PE+L S RRKR+A SG ++++
Sbjct: 351 MASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINR 408
Query: 498 LVAQLFQ---MRVRMKNLMGV 515
++ + Q M R+ N G+
Sbjct: 409 IIKRFDQASKMAKRLTNKKGI 429
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 318 bits (816), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 178/442 (40%), Positives = 277/442 (62%), Gaps = 23/442 (5%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q
Sbjct: 1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 144 --GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVS 200
G+G QQ + + L++++ + S FA++ PTV+L+AGLQG GKTT +
Sbjct: 59 LNGIG-------KQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTT 111
Query: 201 AKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV-YTAGTEVKPSQIAKQGLE 259
AKLA+YLK + K +L A D+ R AA++QL +LGEQVGV V Y VK +IA L+
Sbjct: 112 AKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVK--EIASNALK 169
Query: 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN 319
AK+ DV++VD+AGRL IDK +M ELK+VK +LNP EVL V DA++GQ+ TFN
Sbjct: 170 RAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFN 229
Query: 320 IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 379
EIG++G +L+K D DS+GG AL + G P++ +G GE++ DL+ F P+R+ GR++G
Sbjct: 230 EEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGA 289
Query: 380 GDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG 439
GD++S EK V+ +A+++ KK+ F FNDFL Q V ++GSMS +I MIPG+G
Sbjct: 290 GDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLG 349
Query: 440 KITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVS 496
+ A + + E SL++ ++AM+ +MT +E+E PE+L S RRKR+A SG +++
Sbjct: 350 NMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEIN 407
Query: 497 QLVAQLFQ---MRVRMKNLMGV 515
+++ + Q M R+ N G+
Sbjct: 408 RIIKRFDQASKMAKRLTNKKGI 429
>sp|Q8K9F7|SRP54_BUCAP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ffh PE=3 SV=1
Length = 450
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 167/423 (39%), Positives = 268/423 (63%), Gaps = 7/423 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L + K+ + LT+ENI + +R++R+ALLEADV+L V+++F+Q VS++A+
Sbjct: 1 MFNNLTERLSQSLRKIINKGRLTEENIKDTIREVRKALLEADVTLSVIKKFIQNVSKKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ +KIV++EL+ MG + +L + P +IL+ GLQGVGKTT KL
Sbjct: 61 GHEINKSLTPGQEFIKIVKNELILSMGEKNHDLNLSIQPPAIILVVGLQGVGKTTTLVKL 120
Query: 204 ANYLKKQGKSCML-VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
A ++K++ K +L V+ D+YR AAI QL IL +QV + Y + T P I K+ +E AK
Sbjct: 121 AKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLSDTTQTPINITKEAIEHAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K D++++DTAGRL I+ MM+E+ ++ + P E LL+VD+M GQ+A + F+ +
Sbjct: 181 LKLYDLLLIDTAGRLHINTEMMNEINTIQNISKPIETLLIVDSMMGQDAINIAKKFSASL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
I+G ++TK D D+R G ALS++ ++GKPIK +G GE++ LEPF+P+R+A RILGM V
Sbjct: 241 SISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPFHPERIADRILGMNQV 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
+S ++ +E + Q + + KK +F+ NDFL Q + + MG+++ I KI
Sbjct: 301 ISLIKDIEEKVNQSQVKNLTKKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKFSK-NKI 359
Query: 442 TPAQ--VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
+ E + +L +EA+I +MT +ER P ++ S R++R+A SG Q V++L+
Sbjct: 360 LSNNPLLGENKNTLNRIEAIIYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLL 417
Query: 500 AQL 502
Sbjct: 418 KNF 420
>sp|Q89AE4|SRP54_BUCBP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ffh PE=3 SV=1
Length = 450
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/422 (38%), Positives = 257/422 (60%), Gaps = 5/422 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT K+ + LT++NI E +R+IR ALLEADV+LPVV+ F+ ++ + +
Sbjct: 1 MFNNLTQRFLKIIKKISNKGRLTEKNIKETLREIRIALLEADVALPVVKNFIPSIQKSVI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+L+KIV+ EL ++G E L + + P +IL+ GLQG GKTT +AKL
Sbjct: 61 GNQVNKSLTPGQELIKIVKKELTLILGKENHSLNLSVTPPAIILMIGLQGSGKTTTTAKL 120
Query: 204 ANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
++ K K ++ + D+YR AAI QL +L +Q + + + P I + ++ AK
Sbjct: 121 GQLIRTKYKKKVIVTSIDIYRLAAIKQLKMLSKQAKISFFPSNNTQSPKDIVQHAIQHAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV+++DTAGRLQIDK MM+EL DV + +P E V DAM GQ++ ++ FN +
Sbjct: 181 LKFYDVLLIDTAGRLQIDKKMMNELLDVYNISHPIETFFVADAMFGQDSINVINEFNKYL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
++ I+TK D D+R G LS+K ++ KPIK +G GE++E+LE FYPDR+A RILGMGD+
Sbjct: 241 PVSSFIITKTDSDTRAGIILSIKYLTKKPIKFIGTGEKLEELELFYPDRIASRILGMGDM 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
LS +E + + ++ ++ I N F+FND L + ++G ++ ++G +P I
Sbjct: 301 LSLIENIENKIDKKHIKKFSNTIKKYNTFNFNDMLLHINQIKKIGGVNSILGKLPKTQTI 360
Query: 442 TPA-QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA 500
+ Q E L M+ +I +MT ER +PEL+ S R++R++ SG +++QL+
Sbjct: 361 FNSFQNNIDENILLKMKTIINSMTISERHQPELIKGS--RKRRISLGSGIPIPEINQLLK 418
Query: 501 QL 502
Q
Sbjct: 419 QF 420
>sp|P57473|SRP54_BUCAI Signal recognition particle protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ffh PE=3 SV=1
Length = 451
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/433 (39%), Positives = 276/433 (63%), Gaps = 6/433 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
MF LT L + K+ + LT+ENI E +R++R+ALLEADV+L V+++F++ V ++++
Sbjct: 1 MFNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + + + P Q+ +KIV+ EL+ MG + L F+ P VIL+ GLQG GKTT AKL
Sbjct: 61 GHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKL 120
Query: 204 ANYLKKQGKSCML-VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
++K + K +L + D YR AAI+QL IL +Q+ + + + P +I K ++ AK
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV+++DTAGRL IDK MM+E++ ++ + E LL+VD+M GQ+A + FN ++
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
I+G ILTK DGDSR G ALS++ ++GKPIK +G GE++ LEPF+P+R+A RILGM D+
Sbjct: 241 LISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDI 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
+S +E +E + Q +++ KK+ + F+ NDFL Q + + ++G ++ ++
Sbjct: 301 MSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQL 360
Query: 442 TP--AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
+ + + + +LK +EAMI +MTP+ER KP ++ S R++R+A SG Q V++L+
Sbjct: 361 SNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLL 418
Query: 500 AQLFQMRVRMKNL 512
+R MK +
Sbjct: 419 KNFDDIRRIMKKI 431
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 167/443 (37%), Positives = 285/443 (64%), Gaps = 6/443 (1%)
Query: 85 FGQ-LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
FG L+ ++ + K TL +ENI E +++IR +LLEADV++ + + V ++A+
Sbjct: 3 FGDFLSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKAL 62
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
G + G QQ++KIV +ELV ++G E + L K +P+V+++ GLQG GKTT + KL
Sbjct: 63 GGYISEGASAHQQMIKIVHEELVNILGKENAPLDINK-KPSVVMMVGLQGSGKTTTANKL 121
Query: 204 ANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262
A L K+ K +L+ G D+YRP AI+QLV LG++ V+ G + P + A+Q LE AK
Sbjct: 122 AYLLNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKGKQ-DPVKTAEQALEYAK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
+ N DVVI+DTAGRLQ+D+ +M EL ++K+ +P E+LLVVD M+GQE + FN ++
Sbjct: 181 ENNFDVVILDTAGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKL 240
Query: 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
++G ++TKLDGD+RGGA LS+ ++ PIK +G GE L FYP RMA R++GMGD+
Sbjct: 241 KLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDI 300
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 442
+ E+A E + + ++ ++ FD D Q +A+MGS+++++ M+P + K++
Sbjct: 301 ETLFERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVS 359
Query: 443 PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502
+Q++EA++ L + ++++MT +ER P +L ++ R+ R+ + SG++E++ ++L+
Sbjct: 360 ESQIQEAQRKLAVFSILMDSMTLKERRDPRVL-KAISRKNRIIKGSGRSEKEFNELINSF 418
Query: 503 FQMRVRMKNLMGVMEGGSLPALS 525
+ + ++ + +++ G +P LS
Sbjct: 419 EKGKKQVLEITKMIKSGRMPNLS 441
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 305 bits (780), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/419 (40%), Positives = 258/419 (61%), Gaps = 8/419 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L L A NKLK + K+ I E ++DI+RAL++ADV++ +V + + + +A+
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ + ++KIV +ELVKL+G E +L + VILL G+QG GKTT +AKL
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A Y++K+G L+A D YRPAA +QL L E++ VP+Y T K P I K+G+E+ K
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV+I+DTAGR + +K +++E+K +K + NP E++LV+D GQ+A F +
Sbjct: 181 K--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAV 238
Query: 323 GITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
G G+I+ TKLDG ++GG ALS + PIK +G GE ++DLEPF P + R+LGMGD
Sbjct: 239 GEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
+ S +EKA++ M E EE IM F N+ + Q + MGSM +++ MIPG G
Sbjct: 299 LESLLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGA 357
Query: 442 TPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P ++ E +K + +I +MT EERE P+++ S +R R+A+ SG TE V +++
Sbjct: 358 MPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 414
>sp|P75054|SRP54_MYCPN Signal recognition particle protein OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ffh PE=3 SV=1
Length = 450
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 261/421 (61%), Gaps = 4/421 (0%)
Query: 103 ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162
+T+++ ++ +++IR ALL+ADV+L VV+ F++A+ EQ VG + G + L+K+++
Sbjct: 21 QTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIK 80
Query: 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 221
EL+ ++ E+ RP +++ GLQG GKTT KLA +LKKQ + MLVA D+
Sbjct: 81 QELINILSQPNQEI--TSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDI 138
Query: 222 YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK 281
YRPAAIDQL L EQ + GT+ P Q K+ ++ K+ +I DTAGRLQ ++
Sbjct: 139 YRPAAIDQLATLAEQTESVFFAKGTQA-PDQTTKEAVKTFKESGCQAIICDTAGRLQTNQ 197
Query: 282 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 341
+MDEL +K L+P E+L+VVD ++GQE + F+ + +TG I+TKLD D+R GAA
Sbjct: 198 ELMDELVAIKNELHPDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAA 257
Query: 342 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 401
LS+ + PIKL+G E++ LE F+P+R+A RILG+GDV++ VEKA+EV ++ +
Sbjct: 258 LSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKT 317
Query: 402 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 461
K+ D D L + +MGS+S ++ M+PG ++ V E +K+ + +I
Sbjct: 318 VSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLIN 377
Query: 462 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSL 521
+MT EER P+L+ P R++R+ + SG+ ++++L+ + +++ + + +++GG
Sbjct: 378 SMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSKLQTKTAEMGRMLKGGKN 437
Query: 522 P 522
P
Sbjct: 438 P 438
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 292 bits (748), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 273/445 (61%), Gaps = 14/445 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G + ++KIV DELVKL+G +L S+ +VILL G+QG GKTT SAKL
Sbjct: 61 EEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKKSVILLVGIQGSGKTTSSAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A Y++K+G L+A D+YRPAA QL L E++ VP++ T+ K P +I K+G+E+ K
Sbjct: 121 ARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLFGDETKTKTPVEIVKEGIEKLK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV+I+DTAGR + ++++++E+K +K + NP E++LV+D GQ+A F +
Sbjct: 181 KS--DVLIIDTAGRHKEEESLLEEMKQMKEITNPNEIILVIDGTLGQQAKNQAKAFKDAV 238
Query: 323 GITGAIL-TKLDGDSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
G+IL TKLDG ++GG ALS V E++ PIK +G GE +++LE F P + R+LGMG
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINA-PIKFIGTGEGVDNLETFDPKKFISRLLGMG 297
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D+ S +EK ++VM E EE I+ F + Q T+++MG M +++GMIPG G
Sbjct: 298 DLDSLLEKTEDVM-DESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGG 356
Query: 441 ITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P + + E+ LK + M+++MT EE+E PEL+ S R +R+A+ +G + ++ L+
Sbjct: 357 NMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQDEIKDLL 414
Query: 500 AQLFQMRVRMKNLMGVMEGGSLPAL 524
+ KN G ++ G +P +
Sbjct: 415 ----KYYATTKNAFGNLKRGKMPKM 435
>sp|P47294|SRP54_MYCGE Signal recognition particle protein OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ffh PE=3 SV=1
Length = 446
Score = 290 bits (743), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 261/421 (61%), Gaps = 4/421 (0%)
Query: 103 ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162
+T+T++++ +++IR ALL+ADV+L VV+ F++A+ ++ VG + G + L+K ++
Sbjct: 21 QTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIK 80
Query: 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS-CMLVAGDV 221
EL+ ++ EL + RP I++ GLQG GKTT KLA +L+K+ K MLV D+
Sbjct: 81 TELINILSQPNQEL--NEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDI 138
Query: 222 YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK 281
YRPAAI+QL L +Q + GT+ ++ K L K +I DTAGRLQ ++
Sbjct: 139 YRPAAIEQLETLSQQTNSVFFAQGTQ-PVAKTTKAALSAFKTAKCQTIICDTAGRLQTNE 197
Query: 282 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 341
+MDEL VK LNP E+++VVD ++GQE + TF+ + +TG I++KLD D+R GAA
Sbjct: 198 TLMDELVSVKNELNPDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAA 257
Query: 342 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEM 401
LS+ + PIKL+G E+++ LE F+P+R+A RILG+GDV+S VEKA++V ++D +
Sbjct: 258 LSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKT 317
Query: 402 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 461
K+ D D L + + +MGS+S +I M+P ++ E +++ + +I
Sbjct: 318 ISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLIN 377
Query: 462 AMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSL 521
+MT EER P+L+ P R++R+ + SG+ ++++L+ + +M+++ + +++ GS
Sbjct: 378 SMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSN 437
Query: 522 P 522
P
Sbjct: 438 P 438
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 171/445 (38%), Positives = 271/445 (60%), Gaps = 14/445 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ + +VKIV DELVKL+G + +L S+ +VILL G+QG GKTT +AKL
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A Y++K+G L+A DVYRPAA QL L E++ VP++ T K P I K+G+E+ K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K VDV+I+DTAGR + ++ ++ E+K++K + NP E++LV+D GQ+A F +
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSV 238
Query: 323 GITGAIL-TKLDGDSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
G+IL TKLDG ++GG ALS V E++ PIK +G GE +++LE F P + RILG G
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINA-PIKFIGTGEGVDNLEQFDPKKFISRILGFG 297
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D+ S +EK +++M E AEE I+ F + Q T+++MG M +++ MIPGMG
Sbjct: 298 DLDSLLEKTEDIM-DESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
Query: 441 ITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P + + E LK + M+++MT EE+E PEL+ S R +R+A+ +G +++
Sbjct: 357 NMPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIARGAGVKPEEIK--- 411
Query: 500 AQLFQMRVRMKNLMGVMEGGSLPAL 524
L + KN G ++ G +P +
Sbjct: 412 -DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 272/445 (61%), Gaps = 14/445 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ + +VKIV DELV L+G +L S+ +VILL G+QG GKTT +AKL
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A Y++K+G L+A DVYRPAA QL L E++ VP++ T K P +I K+G+E+ K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K VDV+I+DTAGR + ++ ++ E++++K + NPTE++LV+D GQ+A F +
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMREMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESV 238
Query: 323 GITGAIL-TKLDGDSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
G+IL TKLDG ++GG ALS V E++ PIK +G GE +++LE F P + RILGMG
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINA-PIKFIGTGEGVDNLEQFDPKKFISRILGMG 297
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG
Sbjct: 298 DLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
Query: 441 ITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P + + E LK + M+++MT EE+E PEL+ S R +R+A+ +G ++++
Sbjct: 357 NLPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKAS--RLQRIAKGAGVKQEEIK--- 411
Query: 500 AQLFQMRVRMKNLMGVMEGGSLPAL 524
L + KN G ++ G +P +
Sbjct: 412 -DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 166/428 (38%), Positives = 256/428 (59%), Gaps = 5/428 (1%)
Query: 87 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVG 146
+L L +A KL T+ + I E +RDI+RALL+ADV++ +V + + + ++A+
Sbjct: 5 KLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEE 64
Query: 147 LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206
GV + ++KIV +EL K +G E L K +PTVIL G+QG GKTT AKLA Y
Sbjct: 65 PPAGVSKKEHIIKIVYEELTKFLGTEAKPLEI-KHKPTVILTVGIQGSGKTTSVAKLARY 123
Query: 207 LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 266
L+K+G +V D +RP A QL L + G+ V+ E ++A++G+E ++K V
Sbjct: 124 LQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEEKDAVKLAREGVEHFREKGV 183
Query: 267 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 326
DV+IVD+AGR + +K +++E++ + + P EV+LV+D GQ+A F I
Sbjct: 184 DVIIVDSAGRHKEEKGLIEEMRQISEAIKPHEVILVIDGTIGQQAYNQAMAFKEATPIGS 243
Query: 327 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFV 386
I+TKLDG ++GG ALS +G PIK +G GER++DLEPF P R R+LG+GD+ +
Sbjct: 244 IIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLGDIQGLL 303
Query: 387 EKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ 445
EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P
Sbjct: 304 EKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPED 363
Query: 446 -VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ 504
VR E+ LK + ++++MT EE E PE++ S R KR+A+ SG T +V +L+ Q Q
Sbjct: 364 AVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQ 421
Query: 505 MRVRMKNL 512
M+ K+L
Sbjct: 422 MKKMFKSL 429
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 288 bits (737), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 166/428 (38%), Positives = 255/428 (59%), Gaps = 5/428 (1%)
Query: 87 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVG 146
+L L A KL T+ + I E +RDI+RAL++ADV++ +V + + ++A+
Sbjct: 5 KLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRALEEE 64
Query: 147 LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206
GV + ++KIV +EL K +G E + K +PTV+L G+QG GKTT AKLA Y
Sbjct: 65 PPTGVSKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGIQGSGKTTSIAKLARY 123
Query: 207 LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 266
+K+G LV D +RP A QL L E G+ V+ E ++AK+G+E ++K V
Sbjct: 124 FQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGDPEEKDAIKLAKEGVEHFREKGV 183
Query: 267 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 326
D++IVD+AGR + +K++++E+K + + P EV+LV+D GQ+A F I
Sbjct: 184 DIIIVDSAGRHKEEKSLIEEMKQISAAIKPHEVILVIDGTIGQQAYNQALAFKEATPIGS 243
Query: 327 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFV 386
I+TKLDG ++GG ALS +G PIK +G GER++DLEPF P R R+LG+GD+ +
Sbjct: 244 IIVTKLDGSAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLGDIQGLL 303
Query: 387 EKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ 445
EK +E+ QQE EE +K + F+ D Q + +MG + +++ MIPGMG P
Sbjct: 304 EKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDD 363
Query: 446 -VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ 504
VR E+ LK + ++++MT EE E PE++ S R KR+A+ SG + Q+V +L+ Q Q
Sbjct: 364 AVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQ 421
Query: 505 MRVRMKNL 512
M+ K++
Sbjct: 422 MKKMFKSM 429
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/428 (38%), Positives = 257/428 (60%), Gaps = 5/428 (1%)
Query: 87 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVG 146
+L L +A KL T+ + I E +RDI+RAL+++DV++ +V + + + E+A+
Sbjct: 5 KLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEK 64
Query: 147 LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206
GV P + ++KIV +EL KL+G E L + +PT++L G+QG GKTT AKLA +
Sbjct: 65 PPAGVSPREHVIKIVYEELTKLLGKEAVPLEI-REKPTILLTVGIQGSGKTTTIAKLARH 123
Query: 207 LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 266
L+K+G LV D +RP A QL L E + V+ E ++A++G+E K K V
Sbjct: 124 LQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVFGDPGEKDAIKLAREGVEYFKDKGV 183
Query: 267 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 326
DV+IVDTAGR + + +++E+K + + P EV+LV+D GQ+A F I
Sbjct: 184 DVIIVDTAGRHKEESGLIEEMKQISEAIKPHEVILVIDGTIGQQAYHQALAFKEATPIGS 243
Query: 327 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFV 386
I+TKLDG ++GG ALS +G PIK +G GE+++DLEPF P R R+LG+GD+ +
Sbjct: 244 IIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGDIQGLL 303
Query: 387 EKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ 445
EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P +
Sbjct: 304 EKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDE 363
Query: 446 -VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQ 504
VR E+ L+ ++++MT EE E P+++ S R KR+A+ SG + ++V +L+AQ Q
Sbjct: 364 AVRVGEEKLRRYRIIMDSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQ 421
Query: 505 MRVRMKNL 512
MR KNL
Sbjct: 422 MRKMFKNL 429
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 285 bits (729), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 259/419 (61%), Gaps = 8/419 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L S + A +K+K + K+ + E ++DI++AL++ADV++ +V + + +A+
Sbjct: 1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ ++KIV DELVKL+G E +L +ILL G+QG GKTT +AKL
Sbjct: 61 YESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNKNIILLVGIQGSGKTTSAAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A L+K+G L+A DVYRPAA QL L E++ +P++ T+ K P +I ++GL++ K
Sbjct: 121 ARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQFK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K DV+I+DTAGR + + +++E+K++K NP E++LV+D GQ+A F +
Sbjct: 181 KN--DVIIIDTAGRHKEESGLLEEMKEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKDAV 238
Query: 323 GITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381
G+IL TK+DG ++GG ALS G PIK +G GE+++DLEPF P + R+LGMGD
Sbjct: 239 ENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGD 298
Query: 382 VLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI 441
+ S +EK ++++ +D EE +M F N+ Q +++MGSM +++ MIPGMG
Sbjct: 299 LDSLLEKTEDII-DDDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTN 357
Query: 442 TPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P + E LK + ++++MT E+E P+++ S R KR+A+ +G ++++ +L+
Sbjct: 358 LPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIKTS--RMKRIAKGAGVKQEEIKELL 414
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 174/447 (38%), Positives = 275/447 (61%), Gaps = 18/447 (4%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L L A NKLK + K+ + E ++DI++AL+++DV++ +V + + +A+
Sbjct: 1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ + +VKIV DELVKL+G +L S+ +VILL G+QG GKTT +AKL
Sbjct: 61 DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A Y++K+G L+A DVYRPAA QL L E++ VP++ T K P +I K+G+E+ K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K VDV+I+DTAGR + ++ ++ E+K++K + NP E++LV+D GQ+A F +
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESV 238
Query: 323 GITGAIL-TKLDGDSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
G+IL TKLDG ++GG ALS V E++ PIK +G GE +++LE F P + RILG+G
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINA-PIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG
Sbjct: 298 DLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
Query: 441 ITP---AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQ 497
P AQ+ EA+ LK + M+++MT EE+E PEL+ S R +R+A+ +G ++++
Sbjct: 357 NMPKEAAQLTEAK--LKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQEEIK- 411
Query: 498 LVAQLFQMRVRMKNLMGVMEGGSLPAL 524
L + KN G ++ G +P +
Sbjct: 412 ---DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 271/445 (60%), Gaps = 14/445 (3%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+
Sbjct: 1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ + +VKIV DELVKL+G +L S+ +VILL G+QG GKTT +AKL
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK-PSQIAKQGLEEAK 262
A Y++K+G L+A DVYRPAA QL L E++ VP++ T K P I K+G+E+ K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180
Query: 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322
K VDV+I+DTAGR + +++++ E+K++K + NP E++LV+D GQ+A F +
Sbjct: 181 K--VDVIIIDTAGRHKEEESLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESV 238
Query: 323 GITGAIL-TKLDGDSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380
G+IL TKLDG ++GG ALS V E++ PIK +G GE +++LE F P + RILG+G
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINA-PIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
Query: 381 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK 440
D+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG
Sbjct: 298 DLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
Query: 441 ITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
P + + E LK + M+++MT EE+E PEL+ S R +R+A+ +G + ++
Sbjct: 357 NLPKEAAQLTEDKLKRYKIMMDSMTLEEKENPELIKTS--RLQRIAKGAGVKQDEIK--- 411
Query: 500 AQLFQMRVRMKNLMGVMEGGSLPAL 524
L + KN G ++ G +P +
Sbjct: 412 -DLLKYYSTTKNAFGNLKRGKMPKM 435
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 244/405 (60%), Gaps = 5/405 (1%)
Query: 110 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLM 169
I E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +
Sbjct: 28 IKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87
Query: 170 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 229
G E + K +PT++L+ G+QG GKTT AKLA Y +K+G +V D +RP A Q
Sbjct: 88 GTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQ 146
Query: 230 LVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKD 289
L L ++ + V+ E ++AK+G++ K K VD++IVDTAGR + DKA+++E+K
Sbjct: 147 LRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ 206
Query: 290 VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSG 349
+ V++P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G
Sbjct: 207 ISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATG 266
Query: 350 KPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSA 408
PIK +G GE+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE ++ +
Sbjct: 267 APIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRG 326
Query: 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEE 467
F D Q + +MG + +++ MIPG+G P V E+ LK + ++++MT EE
Sbjct: 327 KFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEE 386
Query: 468 REKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512
PE++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 387 LLNPEIINYS--RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSM 429
>sp|Q2NE47|SRP54_METST Signal recognition particle 54 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1
Length = 444
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/418 (36%), Positives = 250/418 (59%), Gaps = 7/418 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M L+ L KL G + K+ + + +DI+RAL+++DV++ VV + + ++A+
Sbjct: 1 MLEGLSESLTQTMKKLAGMSIIDKKTLKDVTKDIQRALIQSDVNVKVVFGLTKKIEKRAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
L +G+ P + +++IV ELV L+G + EL + +P I++ GLQG GKTT +AKL
Sbjct: 61 EEELPKGLSPKEHVMRIVYQELVNLIGEKPEELKINR-KPYKIMMLGLQGSGKTTTTAKL 119
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
+LKK+G + +V D +RPAA +QL L E + VPV+ +AK+GLE+
Sbjct: 120 VKHLKKKGHTSAIVCTDTWRPAAYEQLRQLTEPLDVPVFGDPENKDAIDLAKKGLEKCGS 179
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
K DV++VDTAGR + +K ++DE+ ++ +++ P EV+LV+D GQ+A + TF
Sbjct: 180 K-YDVILVDTAGRHKEEKDLLDEMAELSQIVQPDEVILVIDGTIGQQARSQAETFKKTTD 238
Query: 324 ITGAILTKLDGDSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 382
I I++KLDG ++GG ALS V E+ PIK +G GER++D E F P+R R+LGMGD+
Sbjct: 239 IGSIIVSKLDGSAKGGGALSAVAEIRA-PIKFIGTGERVDDFEAFDPERFISRLLGMGDL 297
Query: 383 LSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT 442
+ +EKA EV ++ +EM I+S F D Q + +MG + +++ +IPG+G
Sbjct: 298 DTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQL 357
Query: 443 PAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
PA + E+ L + + ++ +MT E E PE++ +S R R+++ +G T V L+
Sbjct: 358 PANASKVTEEKLGMYKILMNSMTTYELENPEVIKKS--RINRISRGAGLTNDDVKDLL 413
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 246/430 (57%), Gaps = 6/430 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M G L L KL G + K+ I E +++I+RAL+++DV++ +V + + ++A+
Sbjct: 1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ P + ++ I+ +E+V L+GGE L +P IL GLQG GKTT KL
Sbjct: 61 EEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDI-DVKPYKILFLGLQGSGKTTTIGKL 119
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
YL+K+G + +V D +RPAA +QL L E++ VP+Y +A++GL+E K
Sbjct: 120 CRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFK- 178
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
N V+I DTAGR + ++ ++ E+ + ++ PTE +LV+D GQ+A F+
Sbjct: 179 -NRKVIIFDTAGRHKQEEDLIAEMDTLDDIIQPTESILVIDGTIGQQAGEQAKAFSQATD 237
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
+ I+TKLDG ++GG A+S +G PIK +G GER++D E F P R R+LGMGD+
Sbjct: 238 VGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDIQ 297
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KIT 442
+ +EKA++ + ++ AE+ K +MS F D Q + MG M +V+ MIPG+G K++
Sbjct: 298 TLIEKAEDSIDEDMAEKTMKNMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMIPGLGNKVS 357
Query: 443 PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502
+ E + + ++ +MT +E E P+L+ +S +R R+A +G E +V L+
Sbjct: 358 KEASKMTEDKIDGYKVIMSSMTKKEMENPKLIKQSRIR--RIAMGAGVEESEVRDLLKYY 415
Query: 503 FQMRVRMKNL 512
+ MK +
Sbjct: 416 NNTKKTMKGI 425
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 242/413 (58%), Gaps = 9/413 (2%)
Query: 102 EETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIV 161
+E L KE + RDI+RALL+ADV++ +V + + + +A+ G+ + ++KIV
Sbjct: 24 DEALVKEVV----RDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIV 79
Query: 162 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221
+EL K +G E + K +PTV+L G+QG GKTT AKLA Y +K+G +V D
Sbjct: 80 YEELTKFLGTEAKPIEI-KEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138
Query: 222 YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK 281
+RP A QL L + + V+ E ++AK+G+E K ++VD++IVDTAGR + +K
Sbjct: 139 WRPGAYHQLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEK 198
Query: 282 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 341
+++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG A
Sbjct: 199 DLIEEMRMISEEIRPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGA 258
Query: 342 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEE 400
LS +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE
Sbjct: 259 LSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEE 318
Query: 401 MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAM 459
+ + F D Q + +MG + +++ MIPG+G P + + E+ L+ + +
Sbjct: 319 DIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVI 378
Query: 460 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512
+++MT EE PE++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 379 MDSMTEEELMNPEIINYS--RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/413 (35%), Positives = 243/413 (58%), Gaps = 9/413 (2%)
Query: 102 EETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIV 161
+E L KE + RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV
Sbjct: 24 DEALVKEVV----RDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIV 79
Query: 162 RDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221
+EL K +G E + K +PT++L+ G+QG GKTT AKLA + +K+G +V D
Sbjct: 80 YEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDT 138
Query: 222 YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK 281
+RP A QL L + + V+ E ++AK+G+E K K VD++IVDTAGR + +K
Sbjct: 139 WRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEK 198
Query: 282 AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAA 341
+++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG A
Sbjct: 199 DLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGA 258
Query: 342 LSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEE 400
LS +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE
Sbjct: 259 LSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEE 318
Query: 401 MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAM 459
++ + F D Q + +MG + +++ MIPG+G P +V E+ L+ + +
Sbjct: 319 DLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVI 378
Query: 460 IEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512
+++MT EE P+++ S R KR+A+ SG + + V +L+ Q QM+ K++
Sbjct: 379 MDSMTEEELMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
>sp|O27376|SRP54_METTH Signal recognition particle 54 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp54 PE=3 SV=1
Length = 442
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 250/429 (58%), Gaps = 5/429 (1%)
Query: 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAV 143
M G L L KL G + +E + E ++DI+RAL+++DV++ +V +++ E+A+
Sbjct: 1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERAL 60
Query: 144 GVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKL 203
+G+ P + ++ IV DE+VKL+G + ELV +P IL GLQG GKTT KL
Sbjct: 61 NEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVI-DDKPYRILFLGLQGSGKTTTIGKL 119
Query: 204 ANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263
A YL+K+G + +V D +RPAA++QL E V +Y +A++GL +K
Sbjct: 120 ARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIYGDPQNRDALDLAEKGLARFQK 179
Query: 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323
K DV+I DTAGR + +K ++ E++++ ++ P E +LV+D GQ+A F
Sbjct: 180 K--DVIIFDTAGRHKEEKDLLREMEELSAIVEPHEAILVIDGTIGQQAREQALAFRKATD 237
Query: 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383
I I+TKLDG ++GG ALS G PIK +G GER++DLE F P+R R+LGMGD+
Sbjct: 238 IGSIIVTKLDGSAKGGGALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLLGMGDLR 297
Query: 384 SFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP 443
S +EK +EV ++E AEE I+S F D Q + +MG + +V+ M+PG GK+
Sbjct: 298 SLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPK 357
Query: 444 AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLF 503
R E++++ ++++MT EE EKP+++ S +R R+A+ SG + V +L+
Sbjct: 358 DASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIR--RIARGSGTRNEDVKELLKYYR 415
Query: 504 QMRVRMKNL 512
+ MK L
Sbjct: 416 VTKKAMKGL 424
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/417 (35%), Positives = 247/417 (59%), Gaps = 15/417 (3%)
Query: 114 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV 173
+++++ +L+++DV++ +V Q + ++ + + + IV DEL KL GG++
Sbjct: 26 IKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELSKLFGGDI 85
Query: 174 SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 233
+ V K P VI+L G+QG GKTT + KLA + KK+G LVA DVYRPAA DQLV +
Sbjct: 86 NPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQI 145
Query: 234 GEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDELKDVK 291
G+Q+ VPVY IAK+G+E+ + D++IVDTAGR + +++E+K++
Sbjct: 146 GKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGRHGYGEEVKLLEEMKNMY 205
Query: 292 RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351
+ P EV+LV+DA GQ+A L + F+ I I+TK+DG ++GG ALS +G
Sbjct: 206 SEIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAA 265
Query: 352 IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--AN 409
IK +G GE++++LE F P R RILGMGD+ S +EK + + + E ++ +++MS A
Sbjct: 266 IKFIGTGEKLDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAK 325
Query: 410 FDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPE 466
D KQ + +MG +++++ M+PG G +I Q++ E+ +K ++ +MT +
Sbjct: 326 LTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYK 385
Query: 467 EREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ------LFQMRVRMKNLMGVME 517
E + P ++ +S +R R+A+ SG + ++V +L+ Q L +M R K L + E
Sbjct: 386 ELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGLAKLFE 440
>sp|Q12ZG8|SRP54_METBU Signal recognition particle 54 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1
Length = 439
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/431 (34%), Positives = 242/431 (56%), Gaps = 13/431 (3%)
Query: 87 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVG 146
+L S L+ A KL G + ++ + E ++DI+RALL+ADV++ +V + + E+A+
Sbjct: 5 KLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERALKEE 64
Query: 147 LIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANY 206
+ G+ P + ++KIV EL+ ++G +P I++ GLQG GKTT ++KL+ Y
Sbjct: 65 VPPGMNPREHVIKIVYQELISIVGRSAD----IPLKPQTIMMIGLQGSGKTTTTSKLSRY 120
Query: 207 LKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 266
+++G ++ D +RP A QL L +++ VP Y I ++GL E K
Sbjct: 121 FQRKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFYGEVGNPDAVGIVERGLAELGKN-- 178
Query: 267 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITG 326
DV+IVDTAGR ++ ++DE++ + + P LLV+D GQ+A+ FN +GI+G
Sbjct: 179 DVLIVDTAGRHSLEADLIDEMEQIHEIAQPDYKLLVLDGAIGQQASEQARAFNDSVGISG 238
Query: 327 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFV 386
+++KLDG ++GG ALS + I +G GE +DLE F PDR R+LGMGD+ S +
Sbjct: 239 VVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGDIKSLI 298
Query: 387 EKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITP 443
EKA+E + +ED + + +M F D Q + +MG M +++ M+P GMG K++
Sbjct: 299 EKAEETLSEEDID--MEAMMRGRFTLKDMYSQLEAMNKMGPMKQIMQMLPLGGMGAKLSD 356
Query: 444 AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLF 503
+ E +K ++++MT EE P LL S R KR++ SG + V +L+
Sbjct: 357 DAYKVTEDKMKGYRVLMDSMTEEELLNPRLLGSS--RIKRISLGSGSSPDAVRELLKYYK 414
Query: 504 QMRVRMKNLMG 514
M+ MK L G
Sbjct: 415 MMQNAMKGLRG 425
>sp|Q9HKT0|SRP54_THEAC Signal recognition particle 54 kDa protein OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=srp54 PE=3 SV=1
Length = 456
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 245/433 (56%), Gaps = 14/433 (3%)
Query: 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGL 147
++ L K+ G + KE + E +D++R LL+ADV++ V + + + +A+
Sbjct: 6 FSASLRETIRKITGSSYIDKETVKEISKDLQRILLKADVNVKTVLQVTKEMERRALEEKP 65
Query: 148 IRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL 207
G+ +V+I+ +EL+K++G E K +P I+L GL G GKTT + KLA +
Sbjct: 66 PAGMAHQDYMVRIIYEELLKILG----EPSNVKLKPQTIMLVGLYGNGKTTTAGKLARFF 121
Query: 208 KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVD 267
K+G + L+A DV+R AA DQL + +V Y +E P ++ K GLE+ K +V
Sbjct: 122 AKKGLNSGLIAADVHRYAAYDQLKQIASEVNAKFYGDQSEKDPVRLIKHGLEQLK--DVA 179
Query: 268 VVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 327
V I+DT+GR +D + DE++ +K + P EVL+++DA GQ+A FN IG+TG
Sbjct: 180 VKIIDTSGRDSMDAELFDEIRRIKEAVAPDEVLMIIDATMGQQAGPEAKAFNDAIGVTGI 239
Query: 328 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVE 387
I+TK+DG ++GG ALS PI +G GE M+DLE F P + R+LG+GD+ S E
Sbjct: 240 IITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLGDLESLFE 299
Query: 388 KAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKI 441
QE + +E+A+E +K+M+ F+ D ++ G M +++ IPG KI
Sbjct: 300 TVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKI 359
Query: 442 TPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ 501
++++ AE L++ ++++MT EE E PE++ + R R+A+ +G E+ V L+ +
Sbjct: 360 DDSKIQSAEDKLRMYRIIMDSMTFEELENPEII--NAKRITRIARGAGVREEDVRMLLKE 417
Query: 502 LFQMRVRMKNLMG 514
M+ MK + G
Sbjct: 418 FKAMKNNMKMMKG 430
>sp|A4YHL0|SRP54_METS5 Signal recognition particle 54 kDa protein OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1
Length = 446
Score = 249 bits (635), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 248/435 (57%), Gaps = 15/435 (3%)
Query: 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGL 147
+ G+ A K G T + + E ++DI++AL+ +DV + +V + E+
Sbjct: 1 MLDGIRDAVRKFLGGNTSYEVAVEEFIKDIQKALISSDVQVKLVFSLTNKIKERLKKETP 60
Query: 148 IRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL 207
+ + +KIV DEL L GG+ V KS P VI+L G+QG GKTT + KLA +
Sbjct: 61 PSNLERREWFIKIVYDELSALFGGDKEPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFY 120
Query: 208 KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVD 267
KK+G LV DVYRPAA++QL +G+Q+ VPVY IAK+G+E+ + +
Sbjct: 121 KKRGYKVALVGADVYRPAALEQLQQIGKQINVPVYGEPGSQDAVGIAKRGVEKFLSERYE 180
Query: 268 VVIVDTAGRLQIDK--AMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGIT 325
+VIVDTAGR + +++E+KD+ + P EV+LV+DA GQ+A L F+ +
Sbjct: 181 LVIVDTAGRHGYGEEVKLLEEMKDIYEKIKPNEVILVIDASLGQKAYDLAKRFHEASNVG 240
Query: 326 GAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSF 385
I+TK+DG ++GG ALS +G PIK +G GE++++LE F P R RILGMGD+ +
Sbjct: 241 SIIITKMDGTAKGGGALSAVAATGAPIKFIGVGEKIDELEVFNPRRFVARILGMGDLEAI 300
Query: 386 VEKAQEVMQQEDAEEMQKK---IMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG--- 437
+EK + + ED E +QKK +M+ + D KQ V +MG +S+++ +IPG
Sbjct: 301 IEKMKAM---EDYEGIQKKMGEVMTGKSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNM 357
Query: 438 MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQ 497
MG I QV+ E+ ++ +++ +MT +E + P ++ + R +R+A SG ++V +
Sbjct: 358 MGDIPEDQVKVGEQKMQRWLSIMNSMTYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRE 415
Query: 498 LVAQLFQMRVRMKNL 512
L+ ++ +K L
Sbjct: 416 LIEHFNTVQRTLKML 430
>sp|A2STI3|SRP54_METLZ Signal recognition particle 54 kDa protein OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54
PE=3 SV=1
Length = 446
Score = 248 bits (634), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 242/429 (56%), Gaps = 13/429 (3%)
Query: 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGL 147
L++ L+ A KL G+ + + + E +RD++RALL +DV++ +V + + +++ L
Sbjct: 6 LSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARSLDEDL 65
Query: 148 IRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL 207
+G+ + +++IV ELV L+G E +E +P IL+AGLQG GKTT + KL Y
Sbjct: 66 PKGINAREHVLRIVYQELVNLVGKE-AEFSL---KPQKILMAGLQGSGKTTTTGKLCRYF 121
Query: 208 KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVD 267
+++G + D +RP A QL L +++ VP Y E +I K GL A K+VD
Sbjct: 122 QRKGLKVGAIGADNFRPGAYAQLETLCKKINVPSYGDPKEKDAVKIVKDGL--AALKDVD 179
Query: 268 VVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 327
V+IVDTAGR ++ ++DE+ V LNP LV+DA GQ A F+ IGI G
Sbjct: 180 VIIVDTAGRHALEDDLIDEITQVNAYLNPDHRWLVIDAALGQAARDQAKRFHEAIGIDGV 239
Query: 328 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVE 387
I+TK+DG ++GG A+S + I +G GE ++DLE F P+ R+LGMGD+ + VE
Sbjct: 240 IVTKMDGTAKGGGAMSAVAETQSGIVFIGNGETIDDLERFDPNGFISRLLGMGDLKALVE 299
Query: 388 KAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT-PAQV 446
KA+E M ED + ++ F ND KQ V +MG + +V+ M+P MG + P+
Sbjct: 300 KAEESMNAEDVD--VNAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLP-MGNMNVPSDA 356
Query: 447 REAE-KSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 505
E +K ++++MTP+E ++P L+ S R RVA+ SG + ++V L+ M
Sbjct: 357 LEGTADKMKKFRIIMDSMTPQELDEPALINTS--RMIRVAKGSGSSVEEVRDLIKYYKMM 414
Query: 506 RVRMKNLMG 514
+ +K G
Sbjct: 415 QKTLKGFRG 423
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 244/404 (60%), Gaps = 9/404 (2%)
Query: 98 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQL 157
K++G + + + E R+I+RALL+ADV L +V+ F + ++ G+ P + +
Sbjct: 14 KIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGIPPREYV 73
Query: 158 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217
+ I+ DELVKL+GGE +P ++LL G++G GKTT +AKLA YL K+G LV
Sbjct: 74 LYILYDELVKLLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKRGYRVGLV 133
Query: 218 AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277
D RPAA DQL L E++GVP Y +IA++G++ K N+DVVI+DTAGR
Sbjct: 134 ETDTIRPAAFDQLKQLAEKIGVPFYGERDSKDAVEIARRGVQNFK--NMDVVIIDTAGRH 191
Query: 278 QIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSR 337
+ ++A++ E+K + +NP EV+LV+DA G+ AAA F + I I+TK+D +R
Sbjct: 192 KNEEALLQEVKMIYEAVNPDEVILVIDATVGKLAAAQAEAFMKYLPIHSVIITKMDSTAR 251
Query: 338 GGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED 397
GG AL+ +G +K +G GE +++ + F P + R+LGMGD+ + VEK + V ++
Sbjct: 252 GGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMGDLDALVEKIKAVFEE-- 309
Query: 398 AEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKI 455
E++ ++I S D F KQ + ++G +S+V+ ++PG KI+ QV ++K+LK
Sbjct: 310 -EKVLQEIESGRLDLLTFKKQIEGLLKLGPLSKVLQLLPGGFAAKISEEQVELSQKNLKK 368
Query: 456 MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 499
A++ +MT EE + P++L S +R R+A +G T + V +++
Sbjct: 369 WYAILSSMTIEELKNPDILNASRIR--RIALGAGVTPKDVKEML 410
>sp|Q8TUY9|SRP54_METKA Signal recognition particle 54 kDa protein OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=srp54 PE=3 SV=1
Length = 447
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 264/433 (60%), Gaps = 23/433 (5%)
Query: 98 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQL 157
K+KG + ++ + E +RD++RALLEADV + +V + + ++A+ GV L
Sbjct: 14 KIKGASIIDEDFVKEVVRDVQRALLEADVDVKLVLELSKRIEKRALEEEPPAGVPKRDYL 73
Query: 158 VKIVRDELVKLMGGEVSE-LVFAKSRP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215
++IV +ELV+L+GGE +E L SR VI+L GL G+GKTT +AKLA YL+++G
Sbjct: 74 LRIVYEELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRKGYRVG 133
Query: 216 LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 275
LV D YRPAA +QL L E+V VPV+ + ++A +G+E A K DVVIVDTAG
Sbjct: 134 LVGADPYRPAAGEQLRQLAEEVDVPVHVEDVD-DAVEMAVKGVE-ALKDECDVVIVDTAG 191
Query: 276 RLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 335
R ++ + ++DEL+++ + P EVLLV+DA GQ+A F+ + +TG ++TKLD
Sbjct: 192 RDRLSEDLIDELREMAERIEPHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTA 251
Query: 336 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 395
++GG ALS +G PIK VG GER++DLE F P R+LG+GD+ + + +E+++
Sbjct: 252 AKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGDIDELLRRTEEMLE- 310
Query: 396 EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG------KITPAQVREA 449
EE + ++ F D +Q +++MG + +++ +PGMG KI+
Sbjct: 311 --EEEKAEDVLEGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMGGGRNVRKISQI----T 364
Query: 450 EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRM 509
E+ LK + ++++MT +E E PE+L +S +R R+A SG +E+ V +L+ ++M M
Sbjct: 365 EERLKKYKVIMDSMTEKELENPEILNKSRIR--RIAIGSGTSERDVIELLNH-YRM---M 418
Query: 510 KNLMGVMEGGSLP 522
K+++ ++ G +P
Sbjct: 419 KDVIEDIQSGRIP 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,738,506
Number of Sequences: 539616
Number of extensions: 7992163
Number of successful extensions: 40773
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 40067
Number of HSP's gapped (non-prelim): 488
length of query: 571
length of database: 191,569,459
effective HSP length: 123
effective length of query: 448
effective length of database: 125,196,691
effective search space: 56088117568
effective search space used: 56088117568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)