Query 008282
Match_columns 571
No_of_seqs 536 out of 4223
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 21:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 3E-110 6E-115 874.0 50.8 430 84-515 1-431 (451)
2 KOG0780 Signal recognition par 100.0 4.1E-99 9E-104 772.4 42.0 482 84-571 2-483 (483)
3 PRK10867 signal recognition pa 100.0 9.4E-93 2E-97 761.8 51.2 426 84-514 1-427 (433)
4 TIGR01425 SRP54_euk signal rec 100.0 2.1E-92 4.6E-97 755.0 47.4 425 84-508 1-429 (429)
5 PRK00771 signal recognition pa 100.0 7.7E-90 1.7E-94 740.7 50.3 434 88-531 1-435 (437)
6 TIGR00959 ffh signal recogniti 100.0 1.3E-89 2.7E-94 737.3 49.3 425 85-511 1-428 (428)
7 COG0552 FtsY Signal recognitio 100.0 3.4E-49 7.3E-54 403.7 31.2 269 106-378 61-340 (340)
8 PRK14974 cell division protein 100.0 1.1E-44 2.3E-49 379.1 34.0 273 105-378 58-335 (336)
9 PRK10416 signal recognition pa 100.0 1.8E-42 4E-47 360.9 35.2 288 83-378 15-315 (318)
10 TIGR00064 ftsY signal recognit 100.0 1.3E-41 2.9E-46 347.7 32.6 265 109-377 2-272 (272)
11 PF00448 SRP54: SRP54-type pro 100.0 1E-38 2.3E-43 311.6 22.5 196 183-378 1-196 (196)
12 KOG0781 Signal recognition par 100.0 1.3E-35 2.7E-40 311.7 24.5 282 93-374 281-583 (587)
13 PRK11889 flhF flagellar biosyn 100.0 2E-34 4.3E-39 303.0 29.9 257 110-379 176-435 (436)
14 PRK12724 flagellar biosynthesi 100.0 5.4E-34 1.2E-38 303.2 32.5 284 85-380 116-418 (432)
15 PRK12723 flagellar biosynthesi 100.0 1.2E-33 2.6E-38 300.9 33.0 256 112-380 109-371 (388)
16 PRK14723 flhF flagellar biosyn 100.0 8.2E-34 1.8E-38 320.2 32.5 250 113-379 126-381 (767)
17 PRK12726 flagellar biosynthesi 100.0 1.2E-33 2.6E-38 296.4 30.7 255 114-380 144-401 (407)
18 PRK05703 flhF flagellar biosyn 100.0 1.1E-31 2.4E-36 290.0 31.3 256 107-380 156-416 (424)
19 PRK06995 flhF flagellar biosyn 100.0 1.4E-31 2.9E-36 291.0 31.1 252 111-380 195-450 (484)
20 COG1419 FlhF Flagellar GTP-bin 100.0 3.7E-31 8.1E-36 278.1 28.1 214 158-380 180-397 (407)
21 PF02978 SRP_SPB: Signal pepti 100.0 8.5E-33 1.8E-37 242.7 9.7 99 409-509 1-104 (104)
22 PRK06731 flhF flagellar biosyn 100.0 1.1E-30 2.3E-35 266.3 25.9 259 107-379 8-269 (270)
23 PRK14722 flhF flagellar biosyn 100.0 9.9E-30 2.1E-34 269.1 31.0 251 115-379 77-339 (374)
24 PRK14721 flhF flagellar biosyn 100.0 7.4E-29 1.6E-33 266.0 30.1 247 115-380 135-385 (420)
25 PRK12727 flagellar biosynthesi 100.0 1.2E-26 2.6E-31 252.4 29.4 241 116-377 296-540 (559)
26 cd03115 SRP The signal recogni 99.9 4.2E-25 9.1E-30 210.4 21.5 172 185-356 2-173 (173)
27 TIGR03499 FlhF flagellar biosy 99.8 2.9E-18 6.2E-23 176.8 20.8 168 85-275 113-282 (282)
28 COG1797 CobB Cobyrinic acid a, 99.6 4.9E-15 1.1E-19 157.0 16.8 293 186-515 3-322 (451)
29 cd02037 MRP-like MRP (Multiple 99.6 1.6E-14 3.6E-19 137.2 18.0 146 186-352 2-161 (169)
30 PRK11670 antiporter inner memb 99.6 1.9E-14 4.1E-19 153.7 20.2 164 184-353 108-310 (369)
31 cd02117 NifH_like This family 99.6 5.4E-15 1.2E-19 145.8 12.4 162 184-352 1-205 (212)
32 PRK13232 nifH nitrogenase redu 99.6 1.4E-14 3.1E-19 148.2 13.6 163 184-352 2-204 (273)
33 TIGR01969 minD_arch cell divis 99.6 4E-14 8.7E-19 141.8 16.1 160 185-353 2-191 (251)
34 PRK13235 nifH nitrogenase redu 99.6 3.5E-14 7.5E-19 145.4 14.9 164 184-352 2-206 (274)
35 TIGR01007 eps_fam capsular exo 99.6 1.7E-13 3.6E-18 134.2 17.7 146 182-335 16-193 (204)
36 TIGR03029 EpsG chain length de 99.5 9.6E-13 2.1E-17 134.7 23.6 142 181-331 101-274 (274)
37 cd02040 NifH NifH gene encodes 99.5 6.6E-14 1.4E-18 142.2 14.7 162 184-352 2-205 (270)
38 PHA02518 ParA-like protein; Pr 99.5 2.5E-13 5.4E-18 132.6 17.4 153 185-352 2-164 (211)
39 PRK13233 nifH nitrogenase redu 99.5 9.9E-14 2.1E-18 142.0 14.9 163 184-352 3-207 (275)
40 PRK13185 chlL protochlorophyll 99.5 4.9E-13 1.1E-17 136.4 19.3 159 184-353 3-202 (270)
41 COG0489 Mrp ATPases involved i 99.5 2.3E-13 4.9E-18 139.2 16.7 146 183-335 57-232 (265)
42 PRK13236 nitrogenase reductase 99.5 2.6E-13 5.7E-18 140.9 16.7 163 183-352 6-210 (296)
43 CHL00175 minD septum-site dete 99.5 4.9E-13 1.1E-17 137.3 18.0 164 182-353 14-213 (281)
44 PRK13230 nitrogenase reductase 99.5 3.5E-13 7.6E-18 138.4 16.6 165 184-353 2-206 (279)
45 PRK13234 nifH nitrogenase redu 99.5 1.7E-13 3.8E-18 142.1 14.2 165 183-352 4-208 (295)
46 CHL00072 chlL photochlorophyll 99.5 2.9E-13 6.3E-18 140.2 15.3 158 186-353 3-200 (290)
47 TIGR01287 nifH nitrogenase iro 99.5 4.2E-13 9E-18 137.4 16.1 163 184-352 1-204 (275)
48 cd02032 Bchl_like This family 99.5 1.4E-12 3.1E-17 132.9 19.1 158 185-352 2-199 (267)
49 TIGR03371 cellulose_yhjQ cellu 99.5 1.6E-12 3.4E-17 130.2 17.7 160 185-352 3-200 (246)
50 PF01656 CbiA: CobQ/CobB/MinD/ 99.5 3.2E-13 6.9E-18 129.7 11.8 143 185-335 1-161 (195)
51 PRK13849 putative crown gall t 99.5 3.2E-12 7E-17 128.3 19.4 94 184-278 2-96 (231)
52 TIGR03018 pepcterm_TyrKin exop 99.5 1.8E-12 4E-17 127.5 17.4 140 182-330 34-207 (207)
53 PRK09841 cryptic autophosphory 99.5 1.8E-12 3.8E-17 149.9 20.1 149 181-337 529-708 (726)
54 cd03110 Fer4_NifH_child This p 99.5 2.3E-12 5E-17 123.3 17.1 154 185-352 2-174 (179)
55 TIGR01281 DPOR_bchL light-inde 99.5 9.7E-13 2.1E-17 134.1 15.2 159 185-353 2-200 (268)
56 COG3640 CooC CO dehydrogenase 99.5 5.3E-13 1.2E-17 131.6 12.3 164 185-360 2-222 (255)
57 COG2894 MinD Septum formation 99.4 7.3E-13 1.6E-17 129.1 12.7 172 184-366 3-218 (272)
58 PRK11519 tyrosine kinase; Prov 99.4 3.6E-12 7.7E-17 147.3 20.4 148 181-336 524-702 (719)
59 PRK13231 nitrogenase reductase 99.4 1.3E-12 2.9E-17 132.9 14.1 162 184-352 3-198 (264)
60 cd02036 MinD Bacterial cell di 99.4 5.1E-12 1.1E-16 119.8 15.9 139 186-352 3-146 (179)
61 KOG3022 Predicted ATPase, nucl 99.4 2.4E-12 5.2E-17 129.4 13.7 168 183-358 48-255 (300)
62 TIGR01968 minD_bact septum sit 99.4 1.1E-11 2.4E-16 124.8 18.8 160 184-352 2-197 (261)
63 TIGR03453 partition_RepA plasm 99.4 1E-11 2.3E-16 133.5 19.7 44 181-224 102-146 (387)
64 PRK13869 plasmid-partitioning 99.4 3.8E-12 8.2E-17 137.7 16.3 162 182-352 120-346 (405)
65 TIGR01005 eps_transp_fam exopo 99.4 3.8E-12 8.3E-17 147.9 17.4 149 181-337 544-723 (754)
66 PRK09435 membrane ATPase/prote 99.4 4.3E-11 9.3E-16 125.9 23.2 147 181-338 54-210 (332)
67 PRK10037 cell division protein 99.4 6.6E-12 1.4E-16 127.0 16.5 140 185-336 3-177 (250)
68 PHA02519 plasmid partition pro 99.4 5.3E-12 1.1E-16 135.7 16.5 162 181-352 104-327 (387)
69 PRK10818 cell division inhibit 99.4 1E-11 2.3E-16 126.5 17.5 161 184-352 3-207 (270)
70 cd02033 BchX Chlorophyllide re 99.4 7.3E-13 1.6E-17 139.1 9.2 164 181-358 29-238 (329)
71 TIGR02016 BchX chlorophyllide 99.4 4.8E-12 1E-16 131.5 15.1 165 184-358 1-213 (296)
72 PRK13705 plasmid-partitioning 99.4 9.7E-12 2.1E-16 133.8 16.6 162 181-352 104-327 (388)
73 TIGR00750 lao LAO/AO transport 99.4 1.3E-11 2.9E-16 128.4 16.9 146 181-337 32-187 (300)
74 cd00550 ArsA_ATPase Oxyanion-t 99.4 8.4E-12 1.8E-16 126.9 14.9 40 184-223 1-40 (254)
75 cd02035 ArsA ArsA ATPase funct 99.4 1.4E-11 3E-16 122.3 15.8 146 185-335 1-183 (217)
76 COG1192 Soj ATPases involved i 99.3 3.9E-11 8.4E-16 121.6 17.5 42 183-224 2-45 (259)
77 COG1703 ArgK Putative periplas 99.3 2.8E-11 6.1E-16 123.3 16.2 143 181-334 49-201 (323)
78 cd03114 ArgK-like The function 99.3 1.6E-11 3.5E-16 115.0 13.4 136 185-333 1-148 (148)
79 PRK01077 cobyrinic acid a,c-di 99.3 4.9E-11 1.1E-15 130.9 18.5 182 185-383 5-197 (451)
80 PF03308 ArgK: ArgK protein; 99.3 3.8E-12 8.3E-17 128.0 8.7 140 181-334 27-179 (266)
81 TIGR03815 CpaE_hom_Actino heli 99.3 1E-10 2.2E-15 122.8 19.7 161 182-353 92-284 (322)
82 COG0455 flhG Antiactivator of 99.3 5.1E-11 1.1E-15 121.5 16.2 167 183-359 2-206 (262)
83 PF07015 VirC1: VirC1 protein; 99.3 1.3E-10 2.8E-15 115.5 17.6 88 185-278 4-96 (231)
84 PF06564 YhjQ: YhjQ protein; 99.3 1.1E-10 2.4E-15 117.4 15.5 143 184-338 2-179 (243)
85 cd02038 FleN-like FleN is a me 99.3 9E-11 1.9E-15 108.5 13.4 106 187-338 4-113 (139)
86 PRK13896 cobyrinic acid a,c-di 99.2 1.7E-10 3.8E-15 125.3 17.4 205 185-419 3-216 (433)
87 TIGR00379 cobB cobyrinic acid 99.2 1.7E-10 3.8E-15 126.4 17.6 210 186-419 2-223 (449)
88 cd02042 ParA ParA and ParB of 99.2 1.3E-10 2.9E-15 101.3 12.3 94 186-330 2-104 (104)
89 PF02374 ArsA_ATPase: Anion-tr 99.2 7E-10 1.5E-14 115.8 19.0 40 184-223 2-41 (305)
90 cd03111 CpaE_like This protein 99.2 2.5E-10 5.4E-15 100.8 12.4 73 186-307 2-76 (106)
91 PF09140 MipZ: ATPase MipZ; I 99.2 6.3E-11 1.4E-15 118.5 8.3 93 185-278 2-111 (261)
92 PF00142 Fer4_NifH: 4Fe-4S iro 99.1 1.4E-09 3.1E-14 109.8 16.9 203 184-393 1-246 (273)
93 PRK06278 cobyrinic acid a,c-di 99.1 2.4E-09 5.1E-14 117.7 18.7 185 160-357 215-416 (476)
94 PRK13768 GTPase; Provisional 99.1 5.1E-10 1.1E-14 113.8 12.5 152 183-337 2-177 (253)
95 COG1348 NifH Nitrogenase subun 99.1 6.1E-09 1.3E-13 102.7 17.4 203 184-393 2-247 (278)
96 PRK00090 bioD dithiobiotin syn 99.1 2.4E-09 5.1E-14 106.2 14.2 170 186-362 2-203 (222)
97 COG1159 Era GTPase [General fu 99.0 3.8E-09 8.3E-14 108.0 14.2 190 183-421 6-206 (298)
98 cd04170 EF-G_bact Elongation f 99.0 8.6E-09 1.9E-13 105.4 16.7 160 263-428 61-240 (268)
99 COG0003 ArsA Predicted ATPase 99.0 8.8E-10 1.9E-14 115.4 8.4 41 183-223 2-42 (322)
100 cd01886 EF-G Elongation factor 99.0 6.3E-09 1.4E-13 106.9 14.1 219 186-428 2-242 (270)
101 cd04168 TetM_like Tet(M)-like 99.0 2.1E-08 4.6E-13 101.0 16.9 145 263-428 61-209 (237)
102 COG0378 HypB Ni2+-binding GTPa 98.9 4E-09 8.6E-14 101.9 9.3 144 182-340 11-160 (202)
103 TIGR00347 bioD dethiobiotin sy 98.9 5.3E-09 1.1E-13 99.0 10.0 140 188-330 2-166 (166)
104 PF13614 AAA_31: AAA domain; P 98.9 6.5E-09 1.4E-13 96.8 9.3 115 184-306 1-151 (157)
105 cd02034 CooC The accessory pro 98.9 9.9E-09 2.2E-13 92.3 10.0 88 186-277 2-98 (116)
106 TIGR00313 cobQ cobyric acid sy 98.9 4.7E-08 1E-12 108.1 16.6 172 186-364 1-227 (475)
107 COG1149 MinD superfamily P-loo 98.9 3E-08 6.4E-13 100.2 13.2 85 264-361 162-249 (284)
108 PF13500 AAA_26: AAA domain; P 98.8 4.7E-08 1E-12 95.4 14.1 168 185-365 2-196 (199)
109 TIGR00073 hypB hydrogenase acc 98.8 1.2E-07 2.6E-12 93.3 16.1 138 181-335 20-161 (207)
110 cd01983 Fer4_NifH The Fer4_Nif 98.8 4.9E-08 1.1E-12 82.1 11.3 69 185-306 1-69 (99)
111 cd04169 RF3 RF3 subfamily. Pe 98.8 6.6E-08 1.4E-12 99.2 12.9 218 184-428 3-239 (267)
112 PRK00784 cobyric acid synthase 98.7 2.5E-07 5.3E-12 102.8 17.5 175 185-365 4-231 (488)
113 cd03112 CobW_like The function 98.7 1.9E-07 4.1E-12 88.3 13.6 144 185-334 2-158 (158)
114 PF02492 cobW: CobW/HypB/UreG, 98.7 1.1E-07 2.4E-12 91.5 12.2 148 185-337 2-156 (178)
115 PRK12374 putative dithiobiotin 98.7 3.6E-07 7.8E-12 91.6 15.7 173 185-362 4-204 (231)
116 KOG1532 GTPase XAB1, interacts 98.6 2.3E-07 4.9E-12 93.7 11.8 121 181-306 17-158 (366)
117 smart00053 DYNc Dynamin, GTPas 98.6 2.4E-07 5.3E-12 93.5 11.7 157 185-347 28-217 (240)
118 cd03109 DTBS Dethiobiotin synt 98.6 5.7E-07 1.2E-11 82.8 13.0 122 186-352 3-129 (134)
119 COG0132 BioD Dethiobiotin synt 98.6 1.1E-06 2.4E-11 87.5 15.7 173 184-362 3-205 (223)
120 PRK05632 phosphate acetyltrans 98.6 1.2E-06 2.6E-11 101.1 17.3 141 185-335 4-155 (684)
121 PF02881 SRP54_N: SRP54-type p 98.6 4.5E-07 9.7E-12 74.9 10.0 75 88-165 1-75 (75)
122 COG1341 Predicted GTPase or GT 98.6 5.5E-07 1.2E-11 95.8 13.2 124 180-305 70-210 (398)
123 PRK00089 era GTPase Era; Revie 98.6 5.4E-07 1.2E-11 93.1 12.8 118 183-336 5-127 (292)
124 PRK13886 conjugal transfer pro 98.6 1.1E-06 2.3E-11 88.7 13.8 43 184-226 3-46 (241)
125 PF03029 ATP_bind_1: Conserved 98.5 1.7E-07 3.7E-12 94.6 7.8 35 188-222 1-35 (238)
126 PRK00007 elongation factor G; 98.5 1.9E-06 4.2E-11 99.6 17.0 139 182-350 9-157 (693)
127 TIGR00484 EF-G translation elo 98.5 3.8E-06 8.2E-11 97.1 19.1 143 182-350 9-157 (689)
128 PRK12739 elongation factor G; 98.5 4.2E-06 9.1E-11 96.8 17.8 144 182-350 7-155 (691)
129 PF02421 FeoB_N: Ferrous iron 98.5 6.3E-07 1.4E-11 84.8 9.0 135 185-356 2-142 (156)
130 cd04163 Era Era subfamily. Er 98.5 1.7E-06 3.7E-11 79.3 11.6 119 183-336 3-125 (168)
131 PRK10463 hydrogenase nickel in 98.5 1.3E-06 2.7E-11 90.4 11.6 138 182-336 103-244 (290)
132 TIGR00436 era GTP-binding prot 98.4 1.6E-06 3.5E-11 88.9 11.7 117 185-336 2-121 (270)
133 COG0480 FusA Translation elong 98.4 2.2E-06 4.8E-11 98.2 13.8 218 182-426 9-250 (697)
134 TIGR02237 recomb_radB DNA repa 98.4 2.9E-06 6.3E-11 83.2 12.7 92 182-276 11-108 (209)
135 KOG2825 Putative arsenite-tran 98.4 3E-06 6.6E-11 84.7 12.3 41 183-223 19-59 (323)
136 PRK09361 radB DNA repair and r 98.4 4E-06 8.7E-11 83.3 13.4 61 163-230 10-70 (225)
137 TIGR00101 ureG urease accessor 98.4 9.5E-06 2.1E-10 79.8 15.7 139 183-335 1-150 (199)
138 COG0529 CysC Adenylylsulfate k 98.4 1.6E-06 3.4E-11 82.9 9.7 45 181-225 21-65 (197)
139 PRK00741 prfC peptide chain re 98.4 1.4E-06 3.1E-11 97.4 11.0 156 182-361 9-176 (526)
140 COG1066 Sms Predicted ATP-depe 98.4 3.3E-06 7.2E-11 89.9 12.9 98 161-274 78-177 (456)
141 cd01394 radB RadB. The archaea 98.4 5.4E-06 1.2E-10 81.9 13.7 53 163-222 6-58 (218)
142 PRK15494 era GTPase Era; Provi 98.3 1.3E-06 2.8E-11 92.7 8.9 119 183-336 52-174 (339)
143 PRK06067 flagellar accessory p 98.3 9.7E-06 2.1E-10 81.1 14.7 107 163-276 12-131 (234)
144 PRK13351 elongation factor G; 98.3 2.1E-05 4.5E-10 91.1 18.7 142 182-353 7-158 (687)
145 smart00382 AAA ATPases associa 98.3 7.8E-06 1.7E-10 72.1 11.9 93 183-281 2-94 (148)
146 PRK12337 2-phosphoglycerate ki 98.3 1.2E-06 2.6E-11 95.5 7.6 107 112-224 178-292 (475)
147 PRK11537 putative GTP-binding 98.3 9.8E-06 2.1E-10 85.3 14.1 160 184-349 5-177 (318)
148 PF01583 APS_kinase: Adenylyls 98.3 2.4E-06 5.3E-11 80.7 8.2 44 182-225 1-44 (156)
149 COG1618 Predicted nucleotide k 98.3 2.2E-05 4.9E-10 74.1 14.4 112 183-306 5-140 (179)
150 TIGR03878 thermo_KaiC_2 KaiC d 98.3 1.9E-05 4.2E-10 80.6 14.8 40 182-221 35-74 (259)
151 PRK14493 putative bifunctional 98.2 1.9E-06 4.1E-11 88.8 6.8 86 184-278 2-100 (274)
152 cd01120 RecA-like_NTPases RecA 98.2 2.2E-05 4.8E-10 72.1 13.0 93 185-277 1-97 (165)
153 PHA02542 41 41 helicase; Provi 98.2 0.00025 5.3E-09 78.6 23.3 87 126-226 146-233 (473)
154 cd01884 EF_Tu EF-Tu subfamily. 98.2 2E-05 4.4E-10 77.1 13.0 122 185-335 4-131 (195)
155 TIGR02655 circ_KaiC circadian 98.2 9.7E-06 2.1E-10 90.0 11.9 102 163-275 250-363 (484)
156 PF00009 GTP_EFTU: Elongation 98.2 1.3E-05 2.8E-10 77.4 11.1 130 183-335 3-135 (188)
157 PRK08533 flagellar accessory p 98.2 2.3E-05 5.1E-10 78.7 13.2 108 163-277 11-129 (230)
158 TIGR00503 prfC peptide chain r 98.2 1.3E-05 2.8E-10 89.8 12.3 158 182-360 10-176 (527)
159 cd00881 GTP_translation_factor 98.2 1.2E-05 2.5E-10 76.1 10.3 125 186-336 2-128 (189)
160 PRK04220 2-phosphoglycerate ki 98.2 7.4E-06 1.6E-10 85.1 9.5 101 117-223 22-128 (301)
161 cd01121 Sms Sms (bacterial rad 98.2 1.8E-05 3.8E-10 85.1 12.6 99 163-276 69-169 (372)
162 COG1160 Predicted GTPases [Gen 98.2 2.7E-05 5.9E-10 84.1 13.8 117 184-335 4-125 (444)
163 TIGR02012 tigrfam_recA protein 98.2 2.9E-05 6.2E-10 81.7 13.8 101 163-278 41-146 (321)
164 TIGR03877 thermo_KaiC_1 KaiC d 98.2 5.1E-05 1.1E-09 76.4 15.1 53 163-222 8-60 (237)
165 cd01124 KaiC KaiC is a circadi 98.1 1.7E-05 3.6E-10 75.9 11.0 39 185-223 1-39 (187)
166 PRK00889 adenylylsulfate kinas 98.1 1.3E-05 2.8E-10 76.5 10.0 44 181-224 2-45 (175)
167 cd01891 TypA_BipA TypA (tyrosi 98.1 6.2E-05 1.3E-09 72.9 14.2 65 264-335 63-130 (194)
168 TIGR02238 recomb_DMC1 meiotic 98.1 0.00023 4.9E-09 74.9 18.6 139 123-277 39-203 (313)
169 PRK12740 elongation factor G; 98.1 6.2E-05 1.3E-09 86.9 15.6 85 263-353 57-145 (668)
170 PRK11823 DNA repair protein Ra 98.1 3.1E-05 6.6E-10 85.2 12.4 99 163-277 67-168 (446)
171 cd00983 recA RecA is a bacter 98.1 5.7E-05 1.2E-09 79.6 13.6 100 163-277 41-145 (325)
172 PLN03187 meiotic recombination 98.0 0.00033 7.2E-09 74.5 19.3 179 80-277 23-233 (344)
173 PRK09554 feoB ferrous iron tra 98.0 6.8E-05 1.5E-09 87.6 15.3 136 184-356 4-149 (772)
174 PRK04296 thymidine kinase; Pro 98.0 2.1E-05 4.6E-10 76.6 9.3 87 184-278 3-91 (190)
175 cd01852 AIG1 AIG1 (avrRpt2-ind 98.0 0.00013 2.7E-09 71.0 14.8 117 185-335 2-129 (196)
176 PF06745 KaiC: KaiC; InterPro 98.0 2.7E-05 5.9E-10 77.4 9.7 53 164-223 7-60 (226)
177 PRK09354 recA recombinase A; P 98.0 4.9E-05 1.1E-09 80.7 12.1 100 163-278 46-151 (349)
178 cd01122 GP4d_helicase GP4d_hel 98.0 0.00025 5.3E-09 72.3 16.8 116 183-305 30-148 (271)
179 TIGR00416 sms DNA repair prote 98.0 4.9E-05 1.1E-09 83.8 12.4 99 163-276 81-181 (454)
180 TIGR03880 KaiC_arch_3 KaiC dom 98.0 7.8E-05 1.7E-09 74.1 12.7 51 164-221 4-54 (224)
181 cd01894 EngA1 EngA1 subfamily. 98.0 7.2E-05 1.6E-09 68.4 11.2 74 264-337 43-120 (157)
182 COG4108 PrfC Peptide chain rel 98.0 9.6E-05 2.1E-09 79.3 13.4 155 182-361 11-178 (528)
183 PRK04328 hypothetical protein; 98.0 7.5E-05 1.6E-09 75.9 12.0 53 163-222 10-62 (249)
184 PTZ00035 Rad51 protein; Provis 98.0 0.00063 1.4E-08 72.3 19.4 121 95-230 35-172 (337)
185 COG0468 RecA RecA/RadA recombi 97.9 0.0002 4.3E-09 74.0 15.0 106 164-278 48-154 (279)
186 PRK08760 replicative DNA helic 97.9 0.0019 4E-08 71.9 23.5 145 182-334 228-390 (476)
187 cd01393 recA_like RecA is a b 97.9 0.00015 3.2E-09 71.8 13.4 52 163-221 6-63 (226)
188 TIGR03600 phage_DnaB phage rep 97.9 0.0047 1E-07 67.4 26.0 116 183-305 194-313 (421)
189 PRK05973 replicative DNA helic 97.9 0.00012 2.6E-09 74.0 12.3 48 182-229 63-110 (237)
190 COG0523 Putative GTPases (G3E 97.9 6.6E-05 1.4E-09 79.1 10.7 145 185-338 3-161 (323)
191 TIGR00665 DnaB replicative DNA 97.9 0.0062 1.4E-07 66.7 26.5 116 182-305 194-313 (434)
192 TIGR00176 mobB molybdopterin-g 97.9 2.3E-05 5E-10 74.1 6.5 37 185-221 1-37 (155)
193 PRK05595 replicative DNA helic 97.9 0.00081 1.8E-08 74.0 19.6 143 183-333 201-361 (444)
194 cd01887 IF2_eIF5B IF2/eIF5B (i 97.9 7.9E-05 1.7E-09 69.3 10.0 65 264-335 48-115 (168)
195 cd04165 GTPBP1_like GTPBP1-lik 97.9 3.5E-05 7.6E-10 77.1 8.1 140 186-335 2-151 (224)
196 cd00984 DnaB_C DnaB helicase C 97.9 0.00031 6.7E-09 70.3 14.9 145 182-334 12-174 (242)
197 TIGR03881 KaiC_arch_4 KaiC dom 97.9 0.0002 4.3E-09 71.3 13.2 53 163-222 7-59 (229)
198 cd04167 Snu114p Snu114p subfam 97.9 8.4E-05 1.8E-09 73.3 10.1 65 264-335 69-136 (213)
199 PRK06526 transposase; Provisio 97.9 9.4E-05 2E-09 75.5 10.6 87 183-290 98-184 (254)
200 PRK12736 elongation factor Tu; 97.9 0.00035 7.6E-09 75.7 15.7 125 182-335 11-141 (394)
201 COG2403 Predicted GTPase [Gene 97.8 0.00021 4.6E-09 75.2 13.2 132 185-338 128-284 (449)
202 PRK05748 replicative DNA helic 97.8 0.0035 7.6E-08 69.1 23.6 117 182-305 202-322 (448)
203 PRK12298 obgE GTPase CgtA; Rev 97.8 7E-05 1.5E-09 81.0 10.0 20 185-204 161-180 (390)
204 TIGR02236 recomb_radA DNA repa 97.8 0.00045 9.8E-09 72.2 15.6 60 163-229 82-148 (310)
205 cd01885 EF2 EF2 (for archaea a 97.8 9.8E-05 2.1E-09 73.9 10.1 65 264-335 71-138 (222)
206 KOG0465 Mitochondrial elongati 97.8 0.00012 2.6E-09 81.1 11.4 233 182-438 38-310 (721)
207 cd01878 HflX HflX subfamily. 97.8 0.00014 3.1E-09 70.7 10.8 21 184-204 42-62 (204)
208 PF10662 PduV-EutP: Ethanolami 97.8 5.7E-05 1.2E-09 70.4 7.4 77 269-350 39-120 (143)
209 cd04166 CysN_ATPS CysN_ATPS su 97.8 3.7E-05 8E-10 75.7 6.6 68 263-336 74-144 (208)
210 PLN03127 Elongation factor Tu; 97.8 0.00026 5.6E-09 78.0 13.8 126 182-336 60-191 (447)
211 PRK09165 replicative DNA helic 97.8 0.0042 9.1E-08 69.4 23.5 145 182-334 216-394 (497)
212 TIGR03574 selen_PSTK L-seryl-t 97.8 0.00019 4.1E-09 72.6 11.8 40 185-224 1-40 (249)
213 PF13401 AAA_22: AAA domain; P 97.8 0.00015 3.2E-09 65.0 9.8 104 183-292 4-113 (131)
214 cd01853 Toc34_like Toc34-like 97.8 0.00011 2.4E-09 74.8 9.7 23 182-204 30-52 (249)
215 PRK04301 radA DNA repair and r 97.8 0.00033 7E-09 73.7 13.6 97 123-229 44-155 (317)
216 TIGR02475 CobW cobalamin biosy 97.8 0.00016 3.4E-09 77.0 11.2 121 184-307 5-135 (341)
217 cd01895 EngA2 EngA2 subfamily. 97.8 0.00018 3.9E-09 66.5 10.4 22 183-204 2-23 (174)
218 PLN00116 translation elongatio 97.8 0.00023 4.9E-09 84.3 13.6 66 264-335 96-163 (843)
219 TIGR00490 aEF-2 translation el 97.8 0.00015 3.3E-09 84.3 12.0 125 183-335 19-151 (720)
220 cd00880 Era_like Era (E. coli 97.8 3.8E-05 8.3E-10 69.1 5.6 71 265-337 44-119 (163)
221 TIGR03594 GTPase_EngA ribosome 97.8 0.00022 4.7E-09 77.7 12.3 116 185-336 1-121 (429)
222 COG0467 RAD55 RecA-superfamily 97.7 0.00061 1.3E-08 69.4 14.5 60 165-231 12-71 (260)
223 CHL00071 tufA elongation facto 97.7 0.00023 4.9E-09 77.5 12.0 126 182-336 11-142 (409)
224 KOG0464 Elongation factor G [T 97.7 0.00024 5.3E-09 75.4 11.6 148 182-353 36-188 (753)
225 PF13481 AAA_25: AAA domain; P 97.7 0.00026 5.6E-09 68.1 11.1 41 183-223 32-82 (193)
226 PF01926 MMR_HSR1: 50S ribosom 97.7 0.00029 6.4E-09 62.3 10.6 67 264-331 45-116 (116)
227 PRK10751 molybdopterin-guanine 97.7 9.6E-05 2.1E-09 71.2 7.9 39 182-220 5-43 (173)
228 cd01879 FeoB Ferrous iron tran 97.7 0.00024 5.2E-09 65.2 10.0 92 264-356 41-138 (158)
229 PRK08506 replicative DNA helic 97.7 0.0058 1.3E-07 67.9 22.5 117 182-305 191-310 (472)
230 cd04171 SelB SelB subfamily. 97.7 0.00018 3.9E-09 66.4 8.9 66 265-336 50-118 (164)
231 cd01890 LepA LepA subfamily. 97.7 0.00068 1.5E-08 63.9 12.9 81 264-351 65-150 (179)
232 COG4963 CpaE Flp pilus assembl 97.7 0.0029 6.3E-08 67.3 18.7 161 182-352 103-300 (366)
233 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00018 3.9E-09 71.6 9.1 51 164-221 7-63 (235)
234 PRK00049 elongation factor Tu; 97.7 0.00027 5.9E-09 76.6 11.1 125 183-336 12-142 (396)
235 PF06414 Zeta_toxin: Zeta toxi 97.7 0.00044 9.5E-09 67.6 11.5 91 181-278 13-105 (199)
236 PRK00411 cdc6 cell division co 97.7 0.028 6E-07 60.4 26.4 93 183-278 55-151 (394)
237 PRK06762 hypothetical protein; 97.6 0.00067 1.4E-08 64.0 12.3 39 183-224 2-40 (166)
238 cd01898 Obg Obg subfamily. Th 97.6 0.00055 1.2E-08 63.8 11.5 19 186-204 3-21 (170)
239 PRK06696 uridine kinase; Valid 97.6 0.00014 3E-09 72.5 7.7 44 181-224 20-63 (223)
240 PRK05541 adenylylsulfate kinas 97.6 0.00046 1E-08 65.9 11.0 42 182-223 6-47 (176)
241 cd01883 EF1_alpha Eukaryotic e 97.6 0.0002 4.3E-09 71.1 8.7 22 186-207 2-23 (219)
242 PRK14494 putative molybdopteri 97.6 8.3E-05 1.8E-09 74.7 5.9 35 184-218 2-36 (229)
243 PRK09302 circadian clock prote 97.6 0.00049 1.1E-08 77.0 12.7 39 183-221 273-311 (509)
244 TIGR01394 TypA_BipA GTP-bindin 97.6 0.00022 4.9E-09 81.1 10.1 123 184-335 2-129 (594)
245 PRK12735 elongation factor Tu; 97.6 0.00054 1.2E-08 74.3 12.5 124 183-335 12-141 (396)
246 TIGR02655 circ_KaiC circadian 97.6 0.00069 1.5E-08 75.4 13.7 100 163-273 8-128 (484)
247 PRK08233 hypothetical protein; 97.6 0.00017 3.7E-09 68.6 7.7 36 183-220 3-38 (182)
248 cd01125 repA Hexameric Replica 97.6 0.00053 1.1E-08 69.0 11.6 52 184-235 2-65 (239)
249 PRK09270 nucleoside triphospha 97.6 0.0022 4.7E-08 64.2 15.9 43 181-223 31-74 (229)
250 cd04164 trmE TrmE (MnmE, ThdF, 97.6 0.00022 4.8E-09 65.0 8.1 71 264-336 47-121 (157)
251 TIGR03594 GTPase_EngA ribosome 97.6 0.0014 3E-08 71.4 15.6 119 182-335 171-296 (429)
252 PRK05291 trmE tRNA modificatio 97.6 0.00063 1.4E-08 75.0 13.0 114 184-335 216-334 (449)
253 PRK00093 GTP-binding protein D 97.6 0.00093 2E-08 73.0 14.2 116 185-336 3-123 (435)
254 PLN02974 adenosylmethionine-8- 97.6 0.0028 6.1E-08 74.6 18.8 85 265-357 184-276 (817)
255 TIGR00991 3a0901s02IAP34 GTP-b 97.6 0.00033 7.1E-09 73.3 10.0 136 161-335 20-166 (313)
256 KOG1533 Predicted GTPase [Gene 97.6 8.7E-05 1.9E-09 73.9 5.3 37 186-222 5-41 (290)
257 cd01889 SelB_euk SelB subfamil 97.6 0.0004 8.8E-09 67.1 10.0 65 264-335 66-133 (192)
258 cd04160 Arfrp1 Arfrp1 subfamil 97.6 0.0002 4.4E-09 66.7 7.6 67 264-336 48-121 (167)
259 COG1084 Predicted GTPase [Gene 97.6 0.0024 5.3E-08 66.7 16.0 116 184-335 169-293 (346)
260 COG1492 CobQ Cobyric acid synt 97.6 0.00016 3.4E-09 79.2 7.5 169 185-364 3-230 (486)
261 PRK10218 GTP-binding protein; 97.6 0.00037 7.9E-09 79.4 10.8 122 183-335 5-133 (607)
262 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.00093 2E-08 66.9 12.5 26 181-206 37-62 (225)
263 COG4240 Predicted kinase [Gene 97.6 0.00055 1.2E-08 68.1 10.4 75 156-231 24-99 (300)
264 PRK09866 hypothetical protein; 97.5 0.0005 1.1E-08 77.7 11.2 68 265-335 229-302 (741)
265 PRK07773 replicative DNA helic 97.5 0.0065 1.4E-07 72.6 21.2 42 182-223 216-258 (886)
266 PRK09302 circadian clock prote 97.5 0.0011 2.3E-08 74.2 14.0 60 163-229 18-78 (509)
267 PRK07667 uridine kinase; Provi 97.5 0.00016 3.4E-09 70.6 6.4 41 182-222 16-56 (193)
268 PRK15467 ethanolamine utilizat 97.5 0.0009 2E-08 63.0 11.4 83 270-355 41-127 (158)
269 PRK03003 GTP-binding protein D 97.5 0.00072 1.6E-08 75.0 12.2 119 182-335 210-335 (472)
270 TIGR03598 GTPase_YsxC ribosome 97.5 0.001 2.2E-08 63.5 11.8 23 182-204 17-39 (179)
271 PRK00093 GTP-binding protein D 97.5 0.0015 3.2E-08 71.4 14.5 119 182-335 172-297 (435)
272 TIGR00485 EF-Tu translation el 97.5 0.00086 1.9E-08 72.7 12.4 126 182-336 11-142 (394)
273 PRK07952 DNA replication prote 97.5 0.00076 1.6E-08 68.5 11.2 76 185-279 101-176 (244)
274 TIGR00450 mnmE_trmE_thdF tRNA 97.5 0.0079 1.7E-07 66.3 19.9 131 184-353 204-339 (442)
275 PTZ00141 elongation factor 1- 97.5 0.00018 3.9E-09 79.2 7.0 67 262-334 81-157 (446)
276 cd01888 eIF2_gamma eIF2-gamma 97.5 0.00021 4.6E-09 70.0 6.8 65 266-336 83-151 (203)
277 PF00154 RecA: recA bacterial 97.5 0.00017 3.8E-09 75.8 6.6 147 162-333 38-190 (322)
278 PRK07003 DNA polymerase III su 97.5 0.015 3.2E-07 67.4 22.3 26 183-208 38-63 (830)
279 COG1160 Predicted GTPases [Gen 97.5 0.003 6.4E-08 68.7 15.7 142 158-337 153-304 (444)
280 PRK09518 bifunctional cytidyla 97.5 0.00088 1.9E-08 78.0 12.7 118 183-335 450-574 (712)
281 PRK05439 pantothenate kinase; 97.5 0.0013 2.9E-08 68.9 12.8 43 181-223 84-128 (311)
282 PRK06749 replicative DNA helic 97.5 0.021 4.5E-07 62.7 22.6 118 182-305 185-307 (428)
283 PRK03003 GTP-binding protein D 97.5 0.00071 1.5E-08 75.0 11.3 117 184-335 39-159 (472)
284 PRK05636 replicative DNA helic 97.5 0.064 1.4E-06 60.2 26.6 91 182-276 264-358 (505)
285 PRK05124 cysN sulfate adenylyl 97.5 0.00031 6.7E-09 78.0 8.2 65 263-335 104-173 (474)
286 PLN03126 Elongation factor Tu; 97.5 0.0011 2.3E-08 73.8 12.4 125 183-336 81-211 (478)
287 COG0486 ThdF Predicted GTPase 97.4 0.0031 6.6E-08 68.7 15.4 139 160-337 196-339 (454)
288 COG2874 FlaH Predicted ATPases 97.4 0.0019 4E-08 63.9 12.4 141 158-305 10-167 (235)
289 PLN00043 elongation factor 1-a 97.4 0.00053 1.1E-08 75.6 9.7 66 263-335 82-158 (447)
290 KOG0635 Adenosine 5'-phosphosu 97.4 0.00064 1.4E-08 63.6 8.6 44 182-225 30-73 (207)
291 PRK15453 phosphoribulokinase; 97.4 0.00063 1.4E-08 70.3 9.5 43 182-224 4-46 (290)
292 TIGR02034 CysN sulfate adenyly 97.4 0.00019 4.2E-09 78.1 6.0 67 263-335 77-146 (406)
293 PF03796 DnaB_C: DnaB-like hel 97.4 0.0071 1.5E-07 61.5 16.9 128 163-305 7-138 (259)
294 PF08433 KTI12: Chromatin asso 97.4 0.0009 1.9E-08 69.0 10.3 106 185-306 3-108 (270)
295 cd02029 PRK_like Phosphoribulo 97.4 0.00052 1.1E-08 70.4 8.4 40 185-224 1-40 (277)
296 KOG1423 Ras-like GTPase ERA [C 97.4 0.00057 1.2E-08 70.6 8.6 124 183-344 72-207 (379)
297 cd04156 ARLTS1 ARLTS1 subfamil 97.4 0.0011 2.5E-08 61.1 10.1 65 265-335 43-114 (160)
298 TIGR00455 apsK adenylylsulfate 97.4 0.0013 2.7E-08 63.4 10.6 44 181-224 16-59 (184)
299 PTZ00416 elongation factor 2; 97.4 0.00023 5.1E-09 84.1 6.6 131 182-335 18-157 (836)
300 KOG0462 Elongation factor-type 97.4 0.0004 8.6E-09 76.4 7.8 145 183-352 60-209 (650)
301 PRK07560 elongation factor EF- 97.4 0.0011 2.3E-08 77.6 11.9 126 182-335 19-152 (731)
302 PLN03186 DNA repair protein RA 97.4 0.0053 1.2E-07 65.4 16.2 104 163-277 110-230 (342)
303 PRK12422 chromosomal replicati 97.4 0.0063 1.4E-07 67.1 17.2 86 185-291 143-228 (445)
304 TIGR02239 recomb_RAD51 DNA rep 97.4 0.009 2E-07 63.0 17.7 57 163-226 83-146 (316)
305 PF13245 AAA_19: Part of AAA d 97.4 0.00046 1E-08 57.5 6.4 45 184-231 11-59 (76)
306 PF13671 AAA_33: AAA domain; P 97.4 0.00026 5.7E-09 64.6 5.4 34 185-223 1-34 (143)
307 PRK00149 dnaA chromosomal repl 97.4 0.011 2.3E-07 65.3 19.1 82 185-287 150-233 (450)
308 PRK08727 hypothetical protein; 97.4 0.0022 4.7E-08 64.5 12.5 35 185-219 43-77 (233)
309 cd00154 Rab Rab family. Rab G 97.4 0.00031 6.7E-09 63.7 5.8 66 264-335 47-118 (159)
310 PRK07764 DNA polymerase III su 97.4 0.013 2.8E-07 69.2 20.6 26 183-208 37-62 (824)
311 PF08423 Rad51: Rad51; InterP 97.4 0.0014 3.1E-08 66.9 11.3 61 163-230 25-92 (256)
312 cd04139 RalA_RalB RalA/RalB su 97.4 0.0013 2.9E-08 60.5 10.1 84 265-354 47-141 (164)
313 cd00009 AAA The AAA+ (ATPases 97.4 0.003 6.4E-08 56.2 12.0 43 183-225 19-61 (151)
314 PRK05433 GTP-binding protein L 97.4 0.00094 2E-08 76.2 10.7 144 182-351 6-157 (600)
315 PRK07004 replicative DNA helic 97.4 0.017 3.7E-07 64.0 20.3 91 182-276 212-306 (460)
316 smart00178 SAR Sar1p-like memb 97.3 0.0011 2.4E-08 63.7 9.6 66 264-335 59-131 (184)
317 TIGR00345 arsA arsenite-activa 97.3 0.0062 1.4E-07 63.1 15.7 25 199-223 1-25 (284)
318 smart00175 RAB Rab subfamily o 97.3 0.0025 5.4E-08 58.8 11.6 82 265-352 48-139 (164)
319 TIGR03156 GTP_HflX GTP-binding 97.3 0.0021 4.6E-08 68.7 12.4 118 184-336 190-315 (351)
320 PF03205 MobB: Molybdopterin g 97.3 0.00034 7.3E-09 65.1 5.5 37 185-221 2-39 (140)
321 cd00878 Arf_Arl Arf (ADP-ribos 97.3 0.00065 1.4E-08 62.7 7.3 66 265-336 42-114 (158)
322 PRK06835 DNA replication prote 97.3 0.0017 3.6E-08 68.9 11.3 90 184-292 184-273 (329)
323 cd02028 UMPK_like Uridine mono 97.3 0.00026 5.6E-09 68.4 4.8 39 185-223 1-39 (179)
324 PRK14489 putative bifunctional 97.3 0.00049 1.1E-08 73.9 7.4 41 182-222 204-244 (366)
325 PRK06893 DNA replication initi 97.3 0.0013 2.9E-08 65.9 10.1 36 185-220 41-76 (229)
326 PRK03846 adenylylsulfate kinas 97.3 0.00032 6.9E-09 68.6 5.4 44 181-224 22-65 (198)
327 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.0013 2.9E-08 64.8 9.9 40 183-222 38-77 (226)
328 cd01897 NOG NOG1 is a nucleola 97.3 0.0022 4.7E-08 59.7 10.8 20 185-204 2-21 (168)
329 PHA00729 NTP-binding motif con 97.3 0.0021 4.5E-08 64.5 11.2 25 184-208 18-42 (226)
330 TIGR01393 lepA GTP-binding pro 97.3 0.0012 2.6E-08 75.3 10.7 146 183-351 3-153 (595)
331 cd04124 RabL2 RabL2 subfamily. 97.3 0.0016 3.5E-08 60.8 9.8 65 264-335 47-117 (161)
332 PRK09519 recA DNA recombinatio 97.3 0.0028 6.1E-08 73.8 13.7 100 163-278 46-151 (790)
333 PRK08006 replicative DNA helic 97.3 0.061 1.3E-06 59.9 23.7 92 182-276 223-318 (471)
334 cd00876 Ras Ras family. The R 97.3 0.0013 2.9E-08 60.1 9.2 19 186-204 2-20 (160)
335 KOG1805 DNA replication helica 97.3 0.00076 1.7E-08 78.2 8.9 58 185-245 687-744 (1100)
336 TIGR03575 selen_PSTK_euk L-ser 97.3 0.0034 7.3E-08 66.8 13.2 37 186-222 2-39 (340)
337 PRK12317 elongation factor 1-a 97.3 0.00055 1.2E-08 74.8 7.6 67 263-335 81-152 (425)
338 cd04137 RheB Rheb (Ras Homolog 97.3 0.00075 1.6E-08 63.9 7.6 21 184-204 2-22 (180)
339 PRK08181 transposase; Validate 97.3 0.0026 5.6E-08 65.6 12.0 83 184-287 107-189 (269)
340 TIGR02928 orc1/cdc6 family rep 97.3 0.15 3.2E-06 54.2 25.9 92 183-277 40-141 (365)
341 PRK14088 dnaA chromosomal repl 97.3 0.014 2.9E-07 64.4 18.4 74 185-278 132-207 (440)
342 PRK05480 uridine/cytidine kina 97.3 0.00046 9.9E-09 67.8 6.1 40 182-223 5-44 (209)
343 PRK12296 obgE GTPase CgtA; Rev 97.3 0.0033 7.2E-08 69.9 13.4 21 184-204 160-180 (500)
344 KOG2743 Cobalamin synthesis pr 97.3 0.0029 6.2E-08 65.3 11.8 146 183-337 57-226 (391)
345 PRK06904 replicative DNA helic 97.3 0.07 1.5E-06 59.4 23.7 92 182-276 220-316 (472)
346 cd01876 YihA_EngB The YihA (En 97.2 0.0028 6E-08 58.1 10.8 19 186-204 2-20 (170)
347 PF01695 IstB_IS21: IstB-like 97.2 0.00098 2.1E-08 64.4 8.0 79 183-282 47-125 (178)
348 PRK14086 dnaA chromosomal repl 97.2 0.013 2.7E-07 66.7 17.9 88 185-293 316-405 (617)
349 cd04145 M_R_Ras_like M-Ras/R-R 97.2 0.0017 3.6E-08 60.1 9.3 20 185-204 4-23 (164)
350 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.2 0.00057 1.2E-08 64.9 6.3 67 264-336 57-130 (174)
351 PRK12402 replication factor C 97.2 0.013 2.8E-07 61.3 17.1 35 185-219 38-74 (337)
352 PRK14495 putative molybdopteri 97.2 0.00041 8.9E-09 75.4 5.8 37 184-220 2-38 (452)
353 COG0370 FeoB Fe2+ transport sy 97.2 0.0011 2.3E-08 75.0 9.2 135 185-356 5-145 (653)
354 PF13479 AAA_24: AAA domain 97.2 0.00052 1.1E-08 68.0 6.0 77 182-277 2-80 (213)
355 PRK12297 obgE GTPase CgtA; Rev 97.2 0.0038 8.3E-08 68.3 13.2 134 185-355 160-307 (424)
356 COG1217 TypA Predicted membran 97.2 0.0041 8.9E-08 67.5 12.9 152 183-363 5-173 (603)
357 cd02027 APSK Adenosine 5'-phos 97.2 0.0003 6.6E-09 65.8 3.9 40 185-224 1-40 (149)
358 PF04548 AIG1: AIG1 family; I 97.2 0.0011 2.4E-08 65.7 8.1 116 185-335 2-129 (212)
359 PF13207 AAA_17: AAA domain; P 97.2 0.00043 9.3E-09 61.4 4.7 32 185-221 1-32 (121)
360 PRK09183 transposase/IS protei 97.2 0.0045 9.8E-08 63.4 12.8 81 183-283 102-182 (259)
361 cd04154 Arl2 Arl2 subfamily. 97.2 0.002 4.3E-08 60.8 9.6 21 184-204 15-35 (173)
362 PF00485 PRK: Phosphoribulokin 97.2 0.00041 9E-09 67.5 4.7 39 185-223 1-43 (194)
363 PRK12323 DNA polymerase III su 97.2 0.078 1.7E-06 60.8 23.3 27 183-209 38-64 (700)
364 cd04159 Arl10_like Arl10-like 97.2 0.0011 2.5E-08 60.1 7.4 19 186-204 2-20 (159)
365 COG2074 2-phosphoglycerate kin 97.2 0.00096 2.1E-08 67.3 7.3 100 117-223 20-125 (299)
366 COG1072 CoaA Panthothenate kin 97.2 0.0041 9E-08 63.7 11.9 58 160-223 65-124 (283)
367 COG3598 RepA RecA-family ATPas 97.2 0.0055 1.2E-07 63.9 12.9 90 184-274 90-203 (402)
368 cd04119 RJL RJL (RabJ-Like) su 97.2 0.0067 1.5E-07 55.9 12.6 19 186-204 3-21 (168)
369 PRK11058 GTPase HflX; Provisio 97.2 0.0031 6.8E-08 69.1 11.9 116 185-335 199-322 (426)
370 TIGR00993 3a0901s04IAP86 chlor 97.2 0.00095 2.1E-08 75.7 8.0 118 184-336 119-250 (763)
371 PRK06321 replicative DNA helic 97.2 0.094 2E-06 58.4 23.7 115 183-305 226-344 (472)
372 PF13604 AAA_30: AAA domain; P 97.2 0.0012 2.5E-08 64.7 7.8 102 184-306 19-131 (196)
373 PHA02530 pseT polynucleotide k 97.2 0.0019 4.1E-08 66.8 9.8 38 183-224 2-39 (300)
374 cd04104 p47_IIGP_like p47 (47- 97.2 0.0012 2.7E-08 64.3 7.9 20 185-204 3-22 (197)
375 PRK05506 bifunctional sulfate 97.2 0.00085 1.8E-08 77.1 7.7 65 263-335 101-170 (632)
376 TIGR01618 phage_P_loop phage n 97.2 0.001 2.3E-08 66.5 7.3 80 183-277 12-93 (220)
377 PLN03118 Rab family protein; P 97.2 0.001 2.2E-08 65.3 7.2 21 184-204 15-35 (211)
378 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.2 0.0037 7.9E-08 58.3 10.6 84 265-354 50-143 (166)
379 cd04155 Arl3 Arl3 subfamily. 97.2 0.0029 6.2E-08 59.3 10.0 22 183-204 14-35 (173)
380 TIGR02528 EutP ethanolamine ut 97.1 0.0019 4.2E-08 58.6 8.5 19 186-204 3-21 (142)
381 KOG2749 mRNA cleavage and poly 97.1 0.0062 1.4E-07 64.2 13.0 42 182-224 103-144 (415)
382 PRK09518 bifunctional cytidyla 97.1 0.0067 1.4E-07 70.8 14.8 118 184-336 276-397 (712)
383 PRK12377 putative replication 97.1 0.0032 6.9E-08 64.1 10.8 77 184-280 102-178 (248)
384 cd01131 PilT Pilus retraction 97.1 0.0083 1.8E-07 58.8 13.4 34 185-218 3-37 (198)
385 cd03116 MobB Molybdenum is an 97.1 0.00084 1.8E-08 63.8 6.1 39 184-222 2-40 (159)
386 PF09439 SRPRB: Signal recogni 97.1 0.0021 4.6E-08 62.3 9.0 84 184-308 4-88 (181)
387 TIGR00362 DnaA chromosomal rep 97.1 0.02 4.4E-07 62.1 17.6 76 184-280 137-214 (405)
388 cd04105 SR_beta Signal recogni 97.1 0.0017 3.7E-08 63.8 8.4 20 185-204 2-21 (203)
389 PRK14953 DNA polymerase III su 97.1 0.13 2.7E-06 57.6 24.1 26 183-208 38-63 (486)
390 cd01864 Rab19 Rab19 subfamily. 97.1 0.0013 2.9E-08 61.3 7.4 21 184-204 4-24 (165)
391 TIGR00708 cobA cob(I)alamin ad 97.1 0.0046 9.9E-08 59.6 10.9 88 183-275 6-107 (173)
392 PRK12299 obgE GTPase CgtA; Rev 97.1 0.0056 1.2E-07 65.1 12.7 114 185-335 160-284 (335)
393 COG4088 Predicted nucleotide k 97.1 0.0092 2E-07 58.9 13.0 36 185-220 3-38 (261)
394 cd04161 Arl2l1_Arl13_like Arl2 97.1 0.0021 4.6E-08 60.6 8.6 66 264-335 41-113 (167)
395 PRK00454 engB GTP-binding prot 97.1 0.0055 1.2E-07 58.7 11.6 21 184-204 25-45 (196)
396 KOG0924 mRNA splicing factor A 97.1 0.013 2.7E-07 66.2 15.5 122 183-308 371-511 (1042)
397 PRK08840 replicative DNA helic 97.1 0.16 3.4E-06 56.5 24.4 118 182-305 216-337 (464)
398 PRK05642 DNA replication initi 97.1 0.0027 5.9E-08 63.9 9.7 92 184-305 46-137 (234)
399 TIGR00475 selB selenocysteine- 97.1 0.0041 8.8E-08 70.8 12.2 111 185-336 2-117 (581)
400 cd00879 Sar1 Sar1 subfamily. 97.1 0.0026 5.6E-08 60.8 9.1 21 184-204 20-40 (190)
401 PF00004 AAA: ATPase family as 97.1 0.0015 3.3E-08 58.1 7.1 69 186-277 1-70 (132)
402 COG1763 MobB Molybdopterin-gua 97.1 0.00072 1.6E-08 64.4 5.1 39 183-221 2-40 (161)
403 PRK08084 DNA replication initi 97.1 0.0044 9.5E-08 62.4 11.1 77 184-290 46-122 (235)
404 cd02021 GntK Gluconate kinase 97.1 0.0031 6.8E-08 58.3 9.3 37 185-226 1-37 (150)
405 PRK14952 DNA polymerase III su 97.1 0.074 1.6E-06 60.6 22.0 27 182-208 34-60 (584)
406 COG2019 AdkA Archaeal adenylat 97.1 0.0015 3.3E-08 62.3 7.1 25 183-207 4-28 (189)
407 PRK14491 putative bifunctional 97.1 0.00079 1.7E-08 76.7 6.3 39 183-221 10-48 (597)
408 TIGR00231 small_GTP small GTP- 97.1 0.0027 5.8E-08 57.0 8.6 20 185-204 3-22 (161)
409 KOG1534 Putative transcription 97.1 0.0044 9.5E-08 61.1 10.4 37 186-222 6-42 (273)
410 PRK04213 GTP-binding protein; 97.1 0.0071 1.5E-07 58.5 12.1 21 184-204 10-30 (201)
411 COG1484 DnaC DNA replication p 97.1 0.0051 1.1E-07 62.9 11.5 80 183-282 105-184 (254)
412 PRK01184 hypothetical protein; 97.1 0.0013 2.8E-08 63.1 6.8 36 184-224 2-37 (184)
413 TIGR02729 Obg_CgtA Obg family 97.0 0.0072 1.6E-07 64.1 12.8 21 184-204 158-178 (329)
414 cd02025 PanK Pantothenate kina 97.0 0.00074 1.6E-08 67.4 5.0 39 185-223 1-41 (220)
415 cd04157 Arl6 Arl6 subfamily. 97.0 0.0032 6.9E-08 58.0 8.9 66 264-335 43-117 (162)
416 PRK06761 hypothetical protein; 97.0 0.014 3E-07 60.6 14.3 41 184-224 4-45 (282)
417 cd04115 Rab33B_Rab33A Rab33B/R 97.0 0.0051 1.1E-07 57.9 10.2 20 185-204 4-23 (170)
418 PRK05306 infB translation init 97.0 0.0019 4.1E-08 75.6 8.8 111 182-335 289-402 (787)
419 TIGR00437 feoB ferrous iron tr 97.0 0.0027 5.8E-08 72.4 9.7 92 264-356 39-136 (591)
420 cd01881 Obg_like The Obg-like 97.0 0.0016 3.5E-08 60.8 6.7 17 188-204 1-17 (176)
421 smart00173 RAS Ras subfamily o 97.0 0.0063 1.4E-07 56.4 10.6 20 185-204 2-21 (164)
422 cd01860 Rab5_related Rab5-rela 97.0 0.0034 7.4E-08 58.0 8.7 20 185-204 3-22 (163)
423 cd01865 Rab3 Rab3 subfamily. 97.0 0.0085 1.8E-07 56.0 11.5 83 265-353 49-141 (165)
424 PRK05800 cobU adenosylcobinami 97.0 0.003 6.5E-08 60.6 8.5 84 185-276 3-87 (170)
425 cd04158 ARD1 ARD1 subfamily. 97.0 0.0038 8.2E-08 58.9 9.1 67 264-336 41-114 (169)
426 cd04162 Arl9_Arfrp2_like Arl9/ 97.0 0.0054 1.2E-07 57.7 10.1 65 264-335 42-112 (164)
427 TIGR00376 DNA helicase, putati 97.0 0.0074 1.6E-07 69.5 13.1 34 185-218 175-208 (637)
428 cd04113 Rab4 Rab4 subfamily. 97.0 0.0023 5E-08 59.2 7.5 19 186-204 3-21 (161)
429 CHL00189 infB translation init 97.0 0.0023 5E-08 74.4 8.9 65 264-335 293-360 (742)
430 cd02023 UMPK Uridine monophosp 97.0 0.00086 1.9E-08 65.2 4.7 37 185-223 1-37 (198)
431 TIGR00554 panK_bact pantothena 97.0 0.0012 2.6E-08 68.7 6.0 43 181-223 60-104 (290)
432 PRK04004 translation initiatio 97.0 0.0028 6E-08 72.2 9.4 23 182-204 5-27 (586)
433 cd04110 Rab35 Rab35 subfamily. 97.0 0.0085 1.8E-07 58.3 11.6 21 184-204 7-27 (199)
434 PRK07994 DNA polymerase III su 97.0 0.083 1.8E-06 60.8 21.1 27 183-209 38-64 (647)
435 cd04151 Arl1 Arl1 subfamily. 97.0 0.0044 9.5E-08 57.4 9.1 66 264-335 41-113 (158)
436 cd01867 Rab8_Rab10_Rab13_like 96.9 0.0074 1.6E-07 56.5 10.7 21 184-204 4-24 (167)
437 cd02019 NK Nucleoside/nucleoti 96.9 0.0012 2.7E-08 53.5 4.6 33 185-219 1-33 (69)
438 PRK13695 putative NTPase; Prov 96.9 0.017 3.7E-07 55.0 13.3 31 185-215 2-32 (174)
439 PF00350 Dynamin_N: Dynamin fa 96.9 0.0007 1.5E-08 63.5 3.6 66 265-332 100-168 (168)
440 PRK14949 DNA polymerase III su 96.9 0.14 3E-06 60.6 22.8 26 183-208 38-63 (944)
441 PRK14965 DNA polymerase III su 96.9 0.078 1.7E-06 60.5 20.6 26 183-208 38-63 (576)
442 cd00544 CobU Adenosylcobinamid 96.9 0.0055 1.2E-07 58.8 9.6 83 185-276 1-84 (169)
443 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.011 2.5E-07 56.3 11.8 34 185-223 1-35 (183)
444 PRK06921 hypothetical protein; 96.9 0.011 2.4E-07 60.9 12.3 36 184-219 118-154 (266)
445 PRK08691 DNA polymerase III su 96.9 0.25 5.3E-06 57.2 24.1 27 183-209 38-64 (709)
446 smart00177 ARF ARF-like small 96.9 0.0029 6.3E-08 60.2 7.5 66 264-335 55-127 (175)
447 TIGR00483 EF-1_alpha translati 96.9 0.0034 7.3E-08 68.7 8.8 25 182-206 6-30 (426)
448 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0027 5.8E-08 63.1 7.3 39 176-214 22-62 (213)
449 cd01893 Miro1 Miro1 subfamily. 96.9 0.0028 6.2E-08 59.4 7.0 66 264-336 45-117 (166)
450 PRK14957 DNA polymerase III su 96.9 0.11 2.5E-06 58.7 20.8 26 183-208 38-63 (546)
451 cd01861 Rab6 Rab6 subfamily. 96.8 0.0078 1.7E-07 55.5 9.8 63 266-334 49-117 (161)
452 PLN00223 ADP-ribosylation fact 96.8 0.006 1.3E-07 58.6 9.3 79 264-350 59-145 (181)
453 PRK14961 DNA polymerase III su 96.8 0.094 2E-06 56.3 19.4 26 183-208 38-63 (363)
454 TIGR00487 IF-2 translation ini 96.8 0.0038 8.2E-08 71.1 9.1 23 182-204 86-108 (587)
455 cd04112 Rab26 Rab26 subfamily. 96.8 0.0045 9.8E-08 59.7 8.5 19 186-204 3-21 (191)
456 COG0050 TufB GTPases - transla 96.8 0.014 2.9E-07 60.4 12.0 174 184-393 13-200 (394)
457 PLN02796 D-glycerate 3-kinase 96.8 0.0044 9.5E-08 65.8 8.9 43 181-223 98-140 (347)
458 PLN02200 adenylate kinase fami 96.8 0.0065 1.4E-07 61.3 9.8 41 180-224 40-80 (234)
459 cd04114 Rab30 Rab30 subfamily. 96.8 0.0026 5.6E-08 59.3 6.5 21 184-204 8-28 (169)
460 cd04149 Arf6 Arf6 subfamily. 96.8 0.0057 1.2E-07 57.8 8.9 66 264-335 51-123 (168)
461 PRK14958 DNA polymerase III su 96.8 0.043 9.4E-07 61.6 17.2 114 183-306 38-157 (509)
462 PLN03046 D-glycerate 3-kinase; 96.8 0.0018 3.8E-08 70.3 5.9 43 181-223 210-252 (460)
463 cd01863 Rab18 Rab18 subfamily. 96.8 0.0052 1.1E-07 56.8 8.4 84 265-354 48-141 (161)
464 PRK04040 adenylate kinase; Pro 96.8 0.0015 3.2E-08 63.7 4.9 31 183-214 2-32 (188)
465 cd04142 RRP22 RRP22 subfamily. 96.8 0.0078 1.7E-07 58.9 10.0 19 186-204 3-21 (198)
466 PRK06647 DNA polymerase III su 96.8 0.32 6.9E-06 55.4 24.1 26 183-208 38-63 (563)
467 PRK09111 DNA polymerase III su 96.8 0.14 3.1E-06 58.5 21.4 26 183-208 46-71 (598)
468 PRK14951 DNA polymerase III su 96.8 0.13 2.9E-06 58.9 21.0 118 183-307 38-163 (618)
469 PRK14970 DNA polymerase III su 96.8 0.17 3.7E-06 54.1 20.9 29 183-211 39-67 (367)
470 cd00882 Ras_like_GTPase Ras-li 96.8 0.0046 9.9E-08 54.5 7.4 68 264-337 43-117 (157)
471 PRK14950 DNA polymerase III su 96.8 0.27 5.8E-06 56.2 23.5 26 183-208 38-63 (585)
472 PRK08116 hypothetical protein; 96.8 0.012 2.5E-07 60.7 11.4 86 184-288 115-201 (268)
473 cd04150 Arf1_5_like Arf1-Arf5- 96.8 0.0047 1E-07 57.8 7.8 66 264-335 42-114 (159)
474 PRK06645 DNA polymerase III su 96.8 0.12 2.6E-06 58.0 20.1 26 183-208 43-68 (507)
475 cd04138 H_N_K_Ras_like H-Ras/N 96.8 0.0095 2.1E-07 54.5 9.7 20 185-204 3-22 (162)
476 PTZ00133 ADP-ribosylation fact 96.8 0.0074 1.6E-07 58.0 9.3 66 264-335 59-131 (182)
477 PRK08939 primosomal protein Dn 96.8 0.0096 2.1E-07 62.5 10.8 79 183-282 156-234 (306)
478 cd01130 VirB11-like_ATPase Typ 96.8 0.0084 1.8E-07 58.0 9.7 119 183-316 25-145 (186)
479 cd00157 Rho Rho (Ras homology) 96.8 0.0016 3.5E-08 60.6 4.6 66 264-335 46-117 (171)
480 cd04125 RabA_like RabA-like su 96.8 0.0094 2E-07 57.1 10.0 20 185-204 2-21 (188)
481 PRK14964 DNA polymerase III su 96.8 0.14 3.1E-06 57.1 20.4 114 183-306 35-154 (491)
482 cd01866 Rab2 Rab2 subfamily. 96.7 0.019 4.2E-07 53.8 11.9 20 185-204 6-25 (168)
483 cd04101 RabL4 RabL4 (Rab-like4 96.7 0.007 1.5E-07 56.1 8.7 66 264-335 50-120 (164)
484 cd04106 Rab23_lke Rab23-like s 96.7 0.013 2.9E-07 54.0 10.4 85 264-355 49-143 (162)
485 PRK04000 translation initiatio 96.7 0.0082 1.8E-07 65.5 10.3 64 266-336 85-153 (411)
486 cd03238 ABC_UvrA The excision 96.7 0.023 5.1E-07 54.8 12.2 105 177-287 15-128 (176)
487 CHL00095 clpC Clp protease ATP 96.7 0.014 3E-07 69.2 12.8 84 184-278 540-624 (821)
488 PTZ00301 uridine kinase; Provi 96.7 0.0029 6.2E-08 62.9 6.0 41 183-223 3-45 (210)
489 TIGR00235 udk uridine kinase. 96.7 0.002 4.3E-08 63.4 4.8 40 181-222 4-43 (207)
490 cd04136 Rap_like Rap-like subf 96.7 0.016 3.5E-07 53.4 10.7 20 185-204 3-22 (163)
491 PF00308 Bac_DnaA: Bacterial d 96.7 0.0069 1.5E-07 60.4 8.7 86 185-291 36-123 (219)
492 TIGR03015 pepcterm_ATPase puta 96.7 0.013 2.8E-07 59.4 10.9 101 183-291 43-147 (269)
493 PRK14971 DNA polymerase III su 96.7 0.55 1.2E-05 54.0 25.1 26 183-208 39-64 (614)
494 PRK05537 bifunctional sulfate 96.7 0.0029 6.4E-08 71.7 6.7 43 181-223 390-433 (568)
495 PRK05506 bifunctional sulfate 96.7 0.0051 1.1E-07 70.8 8.7 44 182-225 459-502 (632)
496 cd04147 Ras_dva Ras-dva subfam 96.7 0.0048 1E-07 59.9 7.3 65 266-336 47-118 (198)
497 TIGR01360 aden_kin_iso1 adenyl 96.7 0.026 5.6E-07 53.8 12.2 24 184-207 4-27 (188)
498 TIGR02868 CydC thiol reductant 96.7 0.012 2.6E-07 65.9 11.5 34 182-215 360-393 (529)
499 cd01868 Rab11_like Rab11-like. 96.7 0.011 2.4E-07 54.9 9.3 20 185-204 5-24 (165)
500 PRK14960 DNA polymerase III su 96.6 0.37 8E-06 55.5 23.0 26 183-208 37-62 (702)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-110 Score=873.97 Aligned_cols=430 Identities=54% Similarity=0.887 Sum_probs=416.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
||++|+++|++++++|++.+.++|++|+++++||+.+||+|||+++||++|+++|++++.+++++++++|.++++++|++
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~ 243 (571)
||++++|++..++.+...+|.||+++|.+|+||||||+|||.||+++|+||++|+||+|||+|++||+++++..++|+|.
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999998666777777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcC
Q 008282 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (571)
Q Consensus 244 ~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~ 323 (571)
.+...+|.+++++++++++...||+|||||+||++.|+.++.|+.++..+++|++++||+|+++||+++++++.|++.++
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 98788999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHH
Q 008282 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (571)
Q Consensus 324 i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~ 403 (571)
++|||+||+|+++++|+++|+.+.+|.||+|+|+||+++||++|+|+++++|+|||||+.+|+|++++.+++++++++.+
T Consensus 241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~ 320 (451)
T COG0541 241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAE 320 (451)
T ss_pred CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCC-CCChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhH
Q 008282 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRK 482 (571)
Q Consensus 404 k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~-~~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~ 482 (571)
++.+|+||++||++||+++.||||+++||+||||++ ..+..+.+.+|+++++|++||+|||++||+||++|+ +||++
T Consensus 321 kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~--~SR~r 398 (451)
T COG0541 321 KLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMGMKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIIN--ASRKR 398 (451)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCCCCCchhhhhccHHHHHHHHHHHHcCCHHHhhCccccC--hHHHH
Confidence 999999999999999999999999999999999998 333445566799999999999999999999999995 89999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 008282 483 RVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 515 (571)
Q Consensus 483 ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~ 515 (571)
|||+||||+++|||+||+||++|++|||+|.++
T Consensus 399 RIA~GSG~sv~dVn~Llkq~~~m~~mmk~m~~~ 431 (451)
T COG0541 399 RIARGSGTSVQDVNKLLKQFKQMKKMMKKMSGG 431 (451)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999875
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-99 Score=772.42 Aligned_cols=482 Identities=37% Similarity=0.593 Sum_probs=459.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
++..|+.+|.++++.+.....+++..++..|+||+++||++||++.+|++|.+++++.+...++.+++++.+.+.+++++
T Consensus 2 vla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~ 81 (483)
T KOG0780|consen 2 VLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFD 81 (483)
T ss_pred chHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~ 243 (571)
||+.+++++...+.+.+.+|.||+|+|.+|+||||+|++||+|++++|+||++|++|+||++|+|||++++...++|+|.
T Consensus 82 eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 82 ELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred HHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcC
Q 008282 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (571)
Q Consensus 244 ~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~ 323 (571)
.++..+|+.++.++++.++.++||+||+||.||++.+..+++|+.++.+++.|+.+++|+|+++||.+..+++.|++.++
T Consensus 162 syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 162 SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHH
Q 008282 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (571)
Q Consensus 324 i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~ 403 (571)
+.+||+||+|+++++|.++++.+.++.||.|||+||+++|+++|+|++|++++||+||+..|+|++++.. .++.+++.+
T Consensus 242 vg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~ 320 (483)
T KOG0780|consen 242 VGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVE 320 (483)
T ss_pred cceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 778899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHH
Q 008282 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR 483 (571)
Q Consensus 404 k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~r 483 (571)
++.+|+||+.||++|++.+.||||++++++|||||+.++..+.++.+.++|+|.+||||||++|++.|+++..+|||+.|
T Consensus 321 kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R~~R 400 (483)
T KOG0780|consen 321 KLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMSMMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSRIMR 400 (483)
T ss_pred HHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCcccCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCchHhhh
Confidence 99999999999999999999999999999999999988888888889999999999999999999999999989999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhHHHHhccccCCCCchhhccccccccccccCCCCCCCC
Q 008282 484 VAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDALKSEQKAPPGTARRKRRSESRRQFVDPASTRPS 563 (571)
Q Consensus 484 ia~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (571)
||||||++++||.+||.||++|..|||+++ +.+|.+|.| ++++ ++.+.+||++++++...-..+.+.+.+.++++
T Consensus 401 vArgSG~~v~eV~ell~q~~~~~~~~kk~~--~~~G~~~~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~mg~k~m 475 (483)
T KOG0780|consen 401 VARGSGTSVQEVMELLAQYKKFAAMMKKIG--GIKGIFGAL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQMGSKNM 475 (483)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHhc--CCCCccccc-CCcc--cccCcCChHHHHHHHHhcccHHHHHHhccchh
Confidence 999999999999999999999999999998 556777777 5555 78899999999998885555555555569999
Q ss_pred CCCCCCCC
Q 008282 564 PRGFGGGS 571 (571)
Q Consensus 564 ~~~~~~~~ 571 (571)
.|+||||.
T Consensus 476 m~~fg~g~ 483 (483)
T KOG0780|consen 476 MRMFGGGN 483 (483)
T ss_pred hHhhcCCC
Confidence 99999984
No 3
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=9.4e-93 Score=761.77 Aligned_cols=426 Identities=55% Similarity=0.905 Sum_probs=406.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
||+.|+++|+++++++.+++.+++++|++.+++|+.+|+++||+++++++|++++++++.+.++..+++|.+++++++++
T Consensus 1 mf~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
+|.+++++...++.+...+|.+|+++|++||||||++++||.+|+++ |++|++|++|+||+++++|+..+++..|+|++
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 99999987666677666679999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc
Q 008282 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (571)
Q Consensus 243 ~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~ 322 (571)
......+|.++++++++.++..+||+|||||||+++.|..++.++..+...+.|+++++|+|++++++++++++.|+..+
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~ 240 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL 240 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhC
Confidence 87667789999999998887788999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHH
Q 008282 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (571)
Q Consensus 323 ~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~ 402 (571)
++.|+|+||+|+++++|.++++...+++||.|+++||+++||++|+|++++++++|+||+.+|+|++++.+++++++++.
T Consensus 241 ~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~ 320 (433)
T PRK10867 241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLA 320 (433)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhH
Q 008282 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRK 482 (571)
Q Consensus 403 ~k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~ 482 (571)
+++.+|+||++||++|++++.||||+++||+||||++++.. +.++++|++|++||+|||++||+||++|+ +||++
T Consensus 321 ~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~~~~~---~~~~~~~~~~~~ii~SMt~~Er~~p~~~~--~sR~~ 395 (433)
T PRK10867 321 KKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGNMKA---QLDDKELKRIEAIINSMTPKERANPDILN--GSRKR 395 (433)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCcccccc---cccHHHHHHHHHHHHcCCHHHHhCccccc--hHHHH
Confidence 99999999999999999999999999999999999987653 24578999999999999999999999994 69999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 008282 483 RVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 514 (571)
Q Consensus 483 ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~ 514 (571)
|||+|||++++|||+||+||++|++||++|.+
T Consensus 396 RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 427 (433)
T PRK10867 396 RIAKGSGTTVQEVNRLLKQFEQMKKMMKKMKG 427 (433)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999876
No 4
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=2.1e-92 Score=755.02 Aligned_cols=425 Identities=29% Similarity=0.534 Sum_probs=401.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
+|++|+++|++++++|++++.++|++|++.+++|+.+|+++||++.++++|++++++++.++++..+++|.+++++++++
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~ 243 (571)
+|.+++++...++.+..++|++|+++|++||||||++++||.+|+++|++|++|++|+||+++++|++.+++..++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999998777777766778999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcC
Q 008282 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (571)
Q Consensus 244 ~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~ 323 (571)
.....+|..+++++++.++..+||+|||||||+++.+..++.|+..+...++|++++||+|+++||++.+++..|++.++
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~ 240 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVD 240 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccC
Confidence 77677899999999999887799999999999999999999999999999999999999999999999999999998899
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHH
Q 008282 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (571)
Q Consensus 324 i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~ 403 (571)
+.|+|+||+|+++++|+++++...+++||.|+|+||+++|+++|+|++++++++|+||+.+|+|++++.+++++++++.+
T Consensus 241 ~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred CcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC-CChh-hhhHHHhhhhhHHHHHhCCChHhhcC--ccccCCChh
Q 008282 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPA-QVREAEKSLKIMEAMIEAMTPEEREK--PELLAESPV 479 (571)
Q Consensus 404 k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~-~~~~-~~~~~~~~~~~~~~ii~sMt~~Er~~--p~~~~~~~s 479 (571)
++.+|+||++||++|++++.||||+++||+||||+++ +... +.+.+|++|++|++||+|||++||+| |++|+.++|
T Consensus 321 k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~s 400 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPS 400 (429)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCcc
Confidence 9999999999999999999999999999999999984 4221 22457889999999999999999998 999954579
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 008282 480 RRKRVAQDSGKTEQQVSQLVAQLFQMRVR 508 (571)
Q Consensus 480 R~~ria~gsG~~~~~v~~l~~~~~~~~~~ 508 (571)
||+|||+||||+++|||+||+||++|++|
T Consensus 401 R~~RIa~GSG~~~~~V~~ll~~~~~~~~~ 429 (429)
T TIGR01425 401 RIQRVARGSGRSIRDVQELLEQYKKFAQM 429 (429)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999654
No 5
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=7.7e-90 Score=740.67 Aligned_cols=434 Identities=41% Similarity=0.695 Sum_probs=403.4
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHH
Q 008282 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVK 167 (571)
Q Consensus 88 l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ 167 (571)
|+++|.++++++.+++.+||++|++.+++|+.+|+++||+++++++|++++++++.+.++..++++.+.++++++++|.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCC
Q 008282 168 LMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE 247 (571)
Q Consensus 168 llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~ 247 (571)
++++...++... .+|.+|+++|++|+||||++++||.+|+++|++|++|++|+||+++++|+..+++..++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 998765554443 5689999999999999999999999999999999999999999999999999999999999876556
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEE
Q 008282 248 VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 327 (571)
Q Consensus 248 ~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GV 327 (571)
.+|.++++++++.+. .+|+|||||||+++.+..++.|+..+...+.|++++||+|+++++++.+.+..|+..+++.|+
T Consensus 160 ~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv 237 (437)
T PRK00771 160 KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237 (437)
T ss_pred cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence 788888888888874 569999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHHHHHc
Q 008282 328 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 407 (571)
Q Consensus 328 IlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~k~~~ 407 (571)
|+||+|+++++|+++++...+++||.|+|+||+++||++|+|+++++++|||||+.+|+|++++.+++++.+++.+++.+
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~ 317 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC-CChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHHhhc
Q 008282 408 ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQ 486 (571)
Q Consensus 408 g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~-~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~ria~ 486 (571)
|+||++||++|++++.||||+++||+||||+++ +++.+.+.++++|++|++||+|||++||+||++|+ +||++|||+
T Consensus 318 ~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~~--~sR~~Ria~ 395 (437)
T PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEIIN--ASRIRRIAR 395 (437)
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHhCcCccccchhhhhcccHHHHHHHHHHHHcCCHHHHhCccccc--HHHHHHHHc
Confidence 999999999999999999999999999999984 54433345788999999999999999999999994 799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhHHHHh
Q 008282 487 DSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPALSNLEDAL 531 (571)
Q Consensus 487 gsG~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (571)
|||++++|||+||+||++|++||++|.+. .|.+..|++++
T Consensus 396 GsG~~~~~v~~ll~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 435 (437)
T PRK00771 396 GSGTTVEDVRELLKYYKMMKKAMKQLKKG-----KGKMGKLMKQF 435 (437)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCC-----CchHHHHHHhc
Confidence 99999999999999999999999988642 36677776654
No 6
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=1.3e-89 Score=737.28 Aligned_cols=425 Identities=55% Similarity=0.897 Sum_probs=400.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHH
Q 008282 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDE 164 (571)
Q Consensus 85 ~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 164 (571)
|++|+++|+++++++.+++.++|+++++.+++|+.+|+++||+.++|++|++++++++.++++..+++|.+.+.++++++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceec
Q 008282 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (571)
Q Consensus 165 L~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~ 243 (571)
|.+++++...++.+...+|++++++|++|+||||++++||.+|. ++|++|++|+||+|||++.+|+..+++..++|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999986555666566799999999999999999999999987 57999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcC
Q 008282 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (571)
Q Consensus 244 ~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~ 323 (571)
.....+|.+++.++++.+..++||+|||||||+++.|..++.++..+...+.|++++||+|+++++++..++..|+..++
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~ 240 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC
Confidence 77677899998888888877889999999999999999999999999999999999999999999999999999998899
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHH
Q 008282 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (571)
Q Consensus 324 i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~ 403 (571)
+.|+|+||+|++.++|.++++...+++||.|+++||+++||++|+|+++++++||+||+.+|+|++++.+++++++++.+
T Consensus 241 i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCChh--hhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhh
Q 008282 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA--QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRR 481 (571)
Q Consensus 404 k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~~~--~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~ 481 (571)
++.+|+||++||++|++++.||||+++||+||||++++... ..+.++++|++|++||+|||++||+||++|+ +||+
T Consensus 321 ~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~~--~sR~ 398 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKILN--PSRR 398 (428)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCccccccccccccccHHHHHHHHHHHHcCCHHHHhCccccc--HHHH
Confidence 99999999999999999999999999999999999875321 1234678999999999999999999999994 7999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 008282 482 KRVAQDSGKTEQQVSQLVAQLFQMRVRMKN 511 (571)
Q Consensus 482 ~ria~gsG~~~~~v~~l~~~~~~~~~~~~~ 511 (571)
+|||+|||++++|||+||+||++|++||++
T Consensus 399 ~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~ 428 (428)
T TIGR00959 399 KRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428 (428)
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999888874
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.4e-49 Score=403.69 Aligned_cols=269 Identities=39% Similarity=0.676 Sum_probs=242.9
Q ss_pred ChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-hhhccccCCCChhhHHHHHHHHHHHHHhcCCcc---c-ccccC
Q 008282 106 TKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQ-AVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS---E-LVFAK 180 (571)
Q Consensus 106 ~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~-~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~---~-l~~~~ 180 (571)
.++..++.+++++..|+++||+++++..|++.+++. ... ..+...+.+...+.+.+.+++.+... + .....
T Consensus 61 ~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~----~~~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~ 136 (340)
T COG0552 61 KEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKK----KKIKDEETVKEALREALIEILRPVDKVDLPLEIPKE 136 (340)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhccc----ccCCCHHHHHHHHHHHHHHHhcccccccchhhhccC
Confidence 445667789999999999999999999999999985 222 22334677888889999999886322 1 12234
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
++|.||+|+|.+|+|||||++|||++|.++|++|++++||+||.+|++||..|+++.|++++....+.||+.++++++++
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999866789999999999999
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhC------CceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCC
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~------pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~ 334 (571)
++.++||+|||||+||+|++.++|.||..+.+++. |+++++|+||++||+++.+++.|++.++++|+|+||+|+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDg 296 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDG 296 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEeccc
Confidence 99999999999999999999999999999999987 456899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 335 DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 335 ~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
++++|.++++++.+++||.|+|.||.++||.+|+++.|++.+++
T Consensus 297 tAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 297 TAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred CCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999987664
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.1e-44 Score=379.05 Aligned_cols=273 Identities=39% Similarity=0.660 Sum_probs=253.8
Q ss_pred CChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccc-----c
Q 008282 105 LTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVF-----A 179 (571)
Q Consensus 105 l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~-----~ 179 (571)
++++++++.+++|+..|+++||+.+++++|++++++.+.+.++..+.++.+.+.+.++++|.++++... .+.+ .
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~ 136 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKS 136 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhc
Confidence 899999999999999999999999999999999999998888777777788889999999999987643 1211 2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 180 ~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
..+|.+|+|+|++|+||||++++||.+|..+|++|+++++|+||.++.+|+..+++..|++++......+|..++.++++
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999987777889999889998
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChh
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGG 339 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g 339 (571)
.+...++|+|||||+|+++.+..++.+|..+.+.+.|+.++||+|+++++++.+++..|+..++++|+|+||+|++.++|
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGG 296 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCcc
Confidence 88778999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 340 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 340 ~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
.++++...++.||.|+++||+++||.+|+|+.++++++|
T Consensus 297 ~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 297 AALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred HHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999887
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=1.8e-42 Score=360.88 Aligned_cols=288 Identities=38% Similarity=0.673 Sum_probs=249.5
Q ss_pred HHHHHHHHHHH-------HHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhh
Q 008282 83 EMFGQLTSGLE-------AAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQ 155 (571)
Q Consensus 83 ~m~~~l~~~l~-------~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~ 155 (571)
.||+.|.+.|. ..++++.+...++++ .+++|+..|+++||+++++++|++++++...+.+ ..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~~~ 86 (318)
T PRK10416 15 GWFERLKKGLSKTRENFGEGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKN----LKDPE 86 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCCHH
Confidence 45555544444 334445555667664 5688999999999999999999999998875543 34567
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhh
Q 008282 156 QLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE 235 (571)
Q Consensus 156 ~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~ 235 (571)
.+.+.++++|.++++....++.....+|.+++++|++|+||||++++||.+++.+|++|+++++|+||+++++|+..++.
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~ 166 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166 (318)
T ss_pred HHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHH
Confidence 78899999999999754445555455689999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhh------CCceEEEEEeCcchH
Q 008282 236 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQ 309 (571)
Q Consensus 236 ~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~------~pd~vlLVvda~~gq 309 (571)
..+++++......+|...+.+.+..+..++||+|||||||+++.+..++.||..+.+++ .|++++||+|+++++
T Consensus 167 ~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 167 RVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 99999987766778887777777776668999999999999999999999999988765 478999999999999
Q ss_pred HHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 310 ~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
+...++..|...+++.|+|+||+|+++++|.++++...+++||.|+++||+++||++|+|+.++++++|
T Consensus 247 ~~~~~a~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~ 315 (318)
T PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315 (318)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 998999999988999999999999999999999999999999999999999999999999999999887
No 10
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=1.3e-41 Score=347.67 Aligned_cols=265 Identities=42% Similarity=0.670 Sum_probs=238.0
Q ss_pred hhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEE
Q 008282 109 NIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILL 188 (571)
Q Consensus 109 ~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~i 188 (571)
.+++.+++|+..|+++||+++++++|++++++...+.+.. ..+.+.+.++++|.++++....++.....++++|+|
T Consensus 2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l 77 (272)
T TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVK----DAELLKEILKEYLKEILKETDLELIVEENKPNVILF 77 (272)
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEE
Confidence 3567899999999999999999999999999887665432 346678899999999887542344444567899999
Q ss_pred EcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcE
Q 008282 189 AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 268 (571)
Q Consensus 189 vG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~Dv 268 (571)
+|++|+||||++++||.+++++|++|++|++|+||+++.+|+..|++..+++++......+|..++.+++..+..++||+
T Consensus 78 ~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ 157 (272)
T TIGR00064 78 VGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDV 157 (272)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999999998877777788888777787776688999
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHhhhC------CceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHH
Q 008282 269 VIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 342 (571)
Q Consensus 269 IIIDTpG~l~~d~~l~~eL~~i~~~~~------pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~l 342 (571)
|||||||+++.|..++.||..+.+.+. |++++||+|++++++....+..|...+++.|+|+||+|++.++|.++
T Consensus 158 ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l 237 (272)
T TIGR00064 158 VLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIIL 237 (272)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHH
Confidence 999999999999999999999998887 99999999999999988999999988999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCCCCCccCCchhHhhhcc
Q 008282 343 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 377 (571)
Q Consensus 343 si~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~l 377 (571)
++...+++||.|+++||+++|+++|+|+++++++|
T Consensus 238 ~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 238 SIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 99999999999999999999999999999998764
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=1e-38 Score=311.58 Aligned_cols=196 Identities=48% Similarity=0.722 Sum_probs=184.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
|+||+|+|++|||||||++|||++++.+|++|++|++|+||.++++||++|++.+|+|++......+|.++++++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999999889999999999999999999999999999999988777789999999999988
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 342 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~l 342 (571)
.+++|+|||||||+.+.+...+.++..+.+...|++++||++++.+++....+..|...+++.++|+||+|++.+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 78999999999999999999999999999999999999999999999888889999988999999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 343 SVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 343 si~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
++...++.||.|+++||+|+||++|+|++++++++|
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999887
No 12
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=311.67 Aligned_cols=282 Identities=28% Similarity=0.477 Sum_probs=251.6
Q ss_pred HHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCC
Q 008282 93 EAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGE 172 (571)
Q Consensus 93 ~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~ 172 (571)
-+.|+.+.|...|.++|++..|+.+++.|+...|..+.+..|++.|...+.|.++-..-+-.+.+.+.+++.|+++|.+.
T Consensus 281 Fg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~ 360 (587)
T KOG0781|consen 281 FGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQ 360 (587)
T ss_pred HHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCC
Confidence 35677789999999999999999999999999999999999999999999888765444446678889999999999764
Q ss_pred cc-ccc------ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhcc------CC
Q 008282 173 VS-ELV------FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV------GV 239 (571)
Q Consensus 173 ~~-~l~------~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~------gv 239 (571)
.. ++. ...++|.+|.|+|.+||||||..+++|++|.+.+++|++++||+||.+|++||++|.+.+ -|
T Consensus 361 ~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v 440 (587)
T KOG0781|consen 361 RSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMV 440 (587)
T ss_pred chhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchh
Confidence 32 221 134589999999999999999999999999999999999999999999999999999987 58
Q ss_pred ceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhh
Q 008282 240 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFN 319 (571)
Q Consensus 240 ~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~ 319 (571)
+++..+.+.+++.++++++++++.++||+|+|||+||+|.+..+|..|..+..+..||.+++|-.|..|.++++++..|+
T Consensus 441 ~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn 520 (587)
T KOG0781|consen 441 ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFN 520 (587)
T ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhc-------CeeEEEEccCCC-CCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhh
Q 008282 320 IEI-------GITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAG 374 (571)
Q Consensus 320 ~~~-------~i~GVIlNKlD~-~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~ 374 (571)
..+ .|+|+|+||+|. +.+.|+++++.+.++.||.|+|.|+.+.||.....+.++.
T Consensus 521 ~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~ 583 (587)
T KOG0781|consen 521 RALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVA 583 (587)
T ss_pred HHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHH
Confidence 743 389999999994 5678999999999999999999999999987655544443
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=2e-34 Score=303.02 Aligned_cols=257 Identities=22% Similarity=0.351 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEE
Q 008282 110 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLA 189 (571)
Q Consensus 110 i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~iv 189 (571)
....+..++..|++.||+..++..+++.+........ ..+ ...+.+.+.+.+...+.... .. ..+|++|+|+
T Consensus 176 ~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~---~~~-~~~~~~~l~~~l~~~l~~~~---~~-~~~~~vI~LV 247 (436)
T PRK11889 176 VPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MIT-EEEVIEYILEDMRSHFNTEN---VF-EKEVQTIALI 247 (436)
T ss_pred cchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccc---cCC-HHHHHHHHHHHHHHHhcccc---cc-ccCCcEEEEE
Confidence 3456788999999999999999999998876533221 122 24566667777777665421 11 2357899999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh-CCCcE
Q 008282 190 GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KNVDV 268 (571)
Q Consensus 190 G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~-~~~Dv 268 (571)
|++||||||++++||..|..+|++|+++++|+||.++++|+..+++..|++++.. .++.++. +++..+.. .++|+
T Consensus 248 GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d~~~L~-~aL~~lk~~~~~Dv 323 (436)
T PRK11889 248 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMT-RALTYFKEEARVDY 323 (436)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CCHHHHH-HHHHHHHhccCCCE
Confidence 9999999999999999999999999999999999999999999999999999864 2455553 67776653 37999
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHH
Q 008282 269 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 347 (571)
Q Consensus 269 IIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~ 347 (571)
|||||||+.+.+...+.++..+.....|+.++||+|++++ +++.+++..|+. ++++++|+||+|+++++|.+++++..
T Consensus 324 VLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 324 ILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred EEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHH
Confidence 9999999999999999999999888889999999999655 677889999985 99999999999999999999999999
Q ss_pred hCCCeEEEecCCCC-CCCccCCchhHhhhccCc
Q 008282 348 SGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (571)
Q Consensus 348 ~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~ 379 (571)
+++||.|+++||+| +|+..++++.++++++|.
T Consensus 403 ~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 403 SSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999 799999999999988873
No 14
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5.4e-34 Score=303.23 Aligned_cols=284 Identities=21% Similarity=0.287 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHH-----HHhhCC-------CCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCC
Q 008282 85 FGQLTSGLEAAW-----NKLKGE-------ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVR 152 (571)
Q Consensus 85 ~~~l~~~l~~~~-----~~l~~~-------~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~ 152 (571)
++.|.+.++..+ +.+.++ ..+++++....+.+++..|+++||+..++.++++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~---- 191 (432)
T PRK12724 116 LEEVITEPERPVGLSFEKELFEKNSFLESETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQG---- 191 (432)
T ss_pred HHHHHhhhhhhhhhhHHHHhhcccccccccccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc----
Confidence 566666666655 555443 3458899999999999999999999999999999998765443322
Q ss_pred hhhHHHHHHHHHHHHHhcCCccccccc-CCCCEEEEEEcCCCCcHHHHHHHHHHHH-HhcCCeEEEEeccCCchhHHHHH
Q 008282 153 PDQQLVKIVRDELVKLMGGEVSELVFA-KSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQL 230 (571)
Q Consensus 153 ~~~~~~~~v~~eL~~llg~~~~~l~~~-~~~~~VI~ivG~~GvGKTTtaakLA~~L-a~~G~kVlLVd~D~~Rp~a~dqL 230 (571)
....+...+.+.|.+.+......+... ..++.+++|+|++||||||++++||..+ ...|++|+++++|+||+++.+|+
T Consensus 192 ~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQL 271 (432)
T PRK12724 192 RNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL 271 (432)
T ss_pred chHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHH
Confidence 123466778888887765432212211 1346899999999999999999999866 57799999999999999999999
Q ss_pred HHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhh---CCceEEEEEeCcc
Q 008282 231 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL---NPTEVLLVVDAMT 307 (571)
Q Consensus 231 ~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~---~pd~vlLVvda~~ 307 (571)
..|++..+++++... + +......+...++|+|||||||+.+.+...+.++..+.... .|.+++||+|+++
T Consensus 272 k~yAe~lgvp~~~~~---~----~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 272 KRYADTMGMPFYPVK---D----IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHHHhcCCCeeehH---H----HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 999999999886431 1 22334444447899999999999999999999999888876 3568999999999
Q ss_pred hHH-HHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 308 GQE-AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 308 gq~-a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
+++ ....+..| ..++++|+|+||+|++.++|.++++...+++||.|+++||+| +|++.++++.+++.++=..
T Consensus 345 ~~~~~~~~~~~f-~~~~~~glIlTKLDEt~~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~~~~ 418 (432)
T PRK12724 345 SYHHTLTVLKAY-ESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVVFPE 418 (432)
T ss_pred CHHHHHHHHHHh-cCCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhcChH
Confidence 874 44555556 689999999999999999999999999999999999999999 7999999988877655433
No 15
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.2e-33 Score=300.86 Aligned_cols=256 Identities=23% Similarity=0.295 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcC
Q 008282 112 EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGL 191 (571)
Q Consensus 112 ~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~ 191 (571)
..+.+++..|+++||++.++++|++.+++.....+. .....+.+.+.+.+.+.+... .++ .....|.+|+++|+
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~-~~~-~~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCS-GSI-IDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhcc-Ccc-ccCCCCeEEEEECC
Confidence 457889999999999999999999999877533221 223445556666666655321 122 12245789999999
Q ss_pred CCCcHHHHHHHHHHHHHh----cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCc
Q 008282 192 QGVGKTTVSAKLANYLKK----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVD 267 (571)
Q Consensus 192 ~GvGKTTtaakLA~~La~----~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~D 267 (571)
+|||||||+++||+++.. +|++|++|++|+||+++.+|+.+|++.+|+|+.... ++.+ +...+..+ .++|
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~---~~~~-l~~~L~~~--~~~D 256 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE---SFKD-LKEEITQS--KDFD 256 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC---cHHH-HHHHHHHh--CCCC
Confidence 999999999999998873 589999999999999999999999999999987543 2333 34455554 6899
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHhhhC-CceEEEEEeCcchHH-HHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHH
Q 008282 268 VVIVDTAGRLQIDKAMMDELKDVKRVLN-PTEVLLVVDAMTGQE-AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVK 345 (571)
Q Consensus 268 vIIIDTpG~l~~d~~l~~eL~~i~~~~~-pd~vlLVvda~~gq~-a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~ 345 (571)
+|||||+|+++.+...+.++..+..... +.+++||+|+++++. ..+.+..|. .+++.|+|+||+|+++++|.++++.
T Consensus 257 lVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 257 LVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHH
Confidence 9999999999988777888888877765 458999999988854 444455565 5789999999999999999999999
Q ss_pred HHhCCCeEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 346 EVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 346 ~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
..+++||.|+++||+| +||.+|+|..+++.++|+.
T Consensus 336 ~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~ 371 (388)
T PRK12723 336 YEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR 371 (388)
T ss_pred HHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC
Confidence 9999999999999999 8999999999999999976
No 16
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=8.2e-34 Score=320.24 Aligned_cols=250 Identities=26% Similarity=0.354 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCC
Q 008282 113 PMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQ 192 (571)
Q Consensus 113 ~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~ 192 (571)
...++++.|+++||+.+++++|++.+.+. .++ ..+.+.++++|.+.+... ....+.-.++.||+|+|++
T Consensus 126 ~~~~l~~~Ll~~dv~~~la~~l~~~l~~~---------~~~-~~~~~~l~~~L~~~l~il-~~~~~~~~~g~Vi~lVGpn 194 (767)
T PRK14723 126 LRASLFRWLLGAGFSGQLARALLERLPVG---------YDR-PAAMAWIRNELATHLPVL-RDEDALLAQGGVLALVGPT 194 (767)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhc---------CCH-HHHHHHHHHHHHHHhhhc-cCCCcccCCCeEEEEECCC
Confidence 34669999999999999999999988543 233 346788888888865421 1111111246899999999
Q ss_pred CCcHHHHHHHHHHHHH-hcC-CeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEE
Q 008282 193 GVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVI 270 (571)
Q Consensus 193 GvGKTTtaakLA~~La-~~G-~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvII 270 (571)
|||||||+++||..+. .+| ++|++|++|+||+++++|+..|++..|++++... +|.+ +.++++.+ .++|+||
T Consensus 195 GvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~--~~~D~VL 268 (767)
T PRK14723 195 GVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAAL--GDKHLVL 268 (767)
T ss_pred CCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHh--cCCCEEE
Confidence 9999999999999885 566 6999999999999999999999999999987543 5665 46777765 5889999
Q ss_pred EeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH-HHHHHHHHhhhh--cCeeEEEEccCCCCCChhHHHHHHHH
Q 008282 271 VDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIE--IGITGAILTKLDGDSRGGAALSVKEV 347 (571)
Q Consensus 271 IDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq-~a~~~~~~f~~~--~~i~GVIlNKlD~~~~~g~~lsi~~~ 347 (571)
|||||+++.+..++.++..+.....|++++||+|++++. +..+++..|... ++++|+|+||+|++.++|.++++...
T Consensus 269 IDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~ 348 (767)
T PRK14723 269 IDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIR 348 (767)
T ss_pred EeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHH
Confidence 999999999999999999988888899999999998774 455677888764 37999999999999999999999999
Q ss_pred hCCCeEEEecCCCC-CCCccCCchhHhhhccCc
Q 008282 348 SGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (571)
Q Consensus 348 ~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~ 379 (571)
+++||.|+++||+| +||++|+++.+++++++.
T Consensus 349 ~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~ 381 (767)
T PRK14723 349 HRLPVHYVSTGQKVPEHLELAQADELVDRAFAT 381 (767)
T ss_pred HCCCeEEEecCCCChhhcccCCHHHHHHHHhcc
Confidence 99999999999999 999999999999999984
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.2e-33 Score=296.37 Aligned_cols=255 Identities=23% Similarity=0.324 Sum_probs=211.8
Q ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCC
Q 008282 114 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 193 (571)
Q Consensus 114 l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~G 193 (571)
.+|+++.|.+.||+..++.+|++.+......... .+ ...+...+.+.|...+... ..+. ..++++++|+|++|
T Consensus 144 ~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~---~~-~~~v~~~~~~~L~~~l~~~-~~~~--~~~~~ii~lvGptG 216 (407)
T PRK12726 144 NSDFVKFLKGRGISDTYVADFMQAGRKQFKQVET---AH-LDDITDWFVPYLSGKLAVE-DSFD--LSNHRIISLIGQTG 216 (407)
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---cc-HHHHHHHHHHHhcCcEeeC-CCce--ecCCeEEEEECCCC
Confidence 3478999999999999999999999766322111 11 2345555666665554432 1222 24578999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh-CCCcEEEEe
Q 008282 194 VGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KNVDVVIVD 272 (571)
Q Consensus 194 vGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~-~~~DvIIID 272 (571)
|||||++++||.++..+|++|++|++|+||+++++||..|++..++|++.. .+|.++ .+++..+.. .++|+||||
T Consensus 217 vGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 217 VGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILID 292 (407)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEE
Confidence 999999999999998899999999999999999999999999999998854 356665 567776642 579999999
Q ss_pred CCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCC
Q 008282 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351 (571)
Q Consensus 273 TpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~P 351 (571)
|||+.+.+...+.++..+...+.|+.++||++++.. +++.+.+..|. .++++|+|+||+|++.++|.+++++..+++|
T Consensus 293 TAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglP 371 (407)
T PRK12726 293 TVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 (407)
T ss_pred CCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCC
Confidence 999999999999999999999999999999998544 67777777776 6899999999999999999999999999999
Q ss_pred eEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 352 IKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 352 I~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
|.|+++||+| +|+..++++.++++++|.+
T Consensus 372 Isylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 372 VLYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred EEEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 9999999999 5798999999999988854
No 18
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.1e-31 Score=290.02 Aligned_cols=256 Identities=29% Similarity=0.436 Sum_probs=211.5
Q ss_pred hhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEE
Q 008282 107 KENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVI 186 (571)
Q Consensus 107 ~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI 186 (571)
...++..+.+++..|+++||+..++.+|++.+.+....... .+.+.+.+.|.+.+......+ . .++.++
T Consensus 156 ~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~-~--~~~~~i 224 (424)
T PRK05703 156 VERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI-L--KQGGVV 224 (424)
T ss_pred cccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc-c--cCCcEE
Confidence 34566788999999999999999999999999776432110 356778888888886543333 2 235699
Q ss_pred EEEcCCCCcHHHHHHHHHHHHH--hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 187 LLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 187 ~ivG~~GvGKTTtaakLA~~La--~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
+|+|++||||||++++||.+++ ..|++|++|++|+||.++.+|+..|++..++|++.... +.++ ...+..+ .
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~~l-~~~l~~~--~ 298 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PKEL-AKALEQL--R 298 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HHhH-HHHHHHh--C
Confidence 9999999999999999999987 45899999999999999999999999999999876532 3332 3444444 4
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHh-hhCCceEEEEEeCcchH-HHHHHHHHhhhhcCeeEEEEccCCCCCChhHHH
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKR-VLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAAL 342 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~-~~~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~l 342 (571)
++|+|||||||+.+.+...+.++..+.. ...+..++||++++.+. +....+..|. .+++.++|+||+|++..+|.++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~ 377 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSIL 377 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHH
Confidence 7999999999999999999999988877 44578999999998775 4455556676 6888999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 343 SVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 343 si~~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
++...+++||.|+++||+| +||++|+++.++++++|..
T Consensus 378 ~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 378 SLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred HHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 9999999999999999998 8999999999999988743
No 19
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.4e-31 Score=290.97 Aligned_cols=252 Identities=29% Similarity=0.364 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEc
Q 008282 111 VEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAG 190 (571)
Q Consensus 111 ~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG 190 (571)
+..+.+++..|+++||+..++++|++++++.... +.....+.+.|.+.+.... .......++.|++|+|
T Consensus 195 ~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~----------~~~~~~l~~~l~~~l~~~~-~~~~~~~~g~Vi~LvG 263 (484)
T PRK06995 195 DPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA----------EAALDWVQSALAKNLPVLD-SEDALLDRGGVFALMG 263 (484)
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch----------hHHHHHHHHHHHHHHhhcc-CccccccCCcEEEEEC
Confidence 3456789999999999999999999999765321 1233445555555443211 1111112467999999
Q ss_pred CCCCcHHHHHHHHHHHHH-hcC-CeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcE
Q 008282 191 LQGVGKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDV 268 (571)
Q Consensus 191 ~~GvGKTTtaakLA~~La-~~G-~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~Dv 268 (571)
++|||||||+++||.++. ++| ++|.+|++|+||.++++||..|++..|++++......+ ... .+.. ..++|+
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~D---l~~-aL~~--L~d~d~ 337 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD---LRL-ALSE--LRNKHI 337 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchh---HHH-HHHh--ccCCCe
Confidence 999999999999999885 556 59999999999999999999999999998876543333 221 2223 367899
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH-HHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHH
Q 008282 269 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 347 (571)
Q Consensus 269 IIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~-~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~ 347 (571)
++|||+|+.+.+..++.++..+.....|++.+||+|+++++..+. .+..|+ ..++.|+|+||+|++.++|.++++...
T Consensus 338 VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-~~~~~g~IlTKlDet~~~G~~l~i~~~ 416 (484)
T PRK06995 338 VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDVVIR 416 (484)
T ss_pred EEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-cCCCCEEEEeCCCCcccchHHHHHHHH
Confidence 999999999988777777766666655788999999987755444 555565 588999999999999999999999999
Q ss_pred hCCCeEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 348 SGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 348 ~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
+++||.|+++||+| +||+.|+++.+++++++.+
T Consensus 417 ~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 417 YKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred HCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 99999999999999 9999999999999998864
No 20
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=3.7e-31 Score=278.12 Aligned_cols=214 Identities=35% Similarity=0.523 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH--hcCCeEEEEeccCCchhHHHHHHHhhh
Q 008282 158 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGE 235 (571)
Q Consensus 158 ~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La--~~G~kVlLVd~D~~Rp~a~dqL~~~~~ 235 (571)
.....+.+..+++.....+.. .+++||+++||+|||||||.+|||+.+. ...++|++|+.|+||.+|++||++||+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~--~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~ 257 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIV--EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD 257 (407)
T ss_pred hhhHHHHHHHHHHhhcccccc--ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHH
Confidence 344455555554433333211 2368999999999999999999999888 456899999999999999999999999
Q ss_pred ccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHH
Q 008282 236 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAAL 314 (571)
Q Consensus 236 ~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~ 314 (571)
.+|+|+.... +|.+. ..++..+ .++|+|+|||+|+.+.|...+.+|.++.....+..++||+++++. ++..++
T Consensus 258 im~vp~~vv~---~~~el-~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 258 IMGVPLEVVY---SPKEL-AEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred HhCCceEEec---CHHHH-HHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 9999998753 44444 3556655 588999999999999999999999999999988999999999776 677788
Q ss_pred HHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 315 VTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 315 ~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
+..|. .+++.|+|+||+|++...|.+.++..++++||.|+++||+| +||....++.++++++|..
T Consensus 332 ~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 332 IKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred HHHhc-cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 88888 69999999999999999999999999999999999999999 7999999999999988743
No 21
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=99.98 E-value=8.5e-33 Score=242.74 Aligned_cols=99 Identities=46% Similarity=0.806 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCC----Chh-hhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHH
Q 008282 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKI----TPA-QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR 483 (571)
Q Consensus 409 ~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~----~~~-~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~r 483 (571)
+||++||++|++++.||||+++|++||||++++ +.. ..+.+++++++|++||+|||++||+||++|+ .||++|
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll~--~sR~~R 78 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGNMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLLN--ESRRRR 78 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSSS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGHH--HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCccccc--hHHHHH
Confidence 599999999999999999999999999999876 322 3456788999999999999999999999995 599999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHH
Q 008282 484 VAQDSGKTEQQVSQLVAQLFQMRVRM 509 (571)
Q Consensus 484 ia~gsG~~~~~v~~l~~~~~~~~~~~ 509 (571)
||+|||++++|||+||++|++|++||
T Consensus 79 IA~GSG~~~~eV~~ll~~f~~~~~mm 104 (104)
T PF02978_consen 79 IARGSGTTVQEVNELLKQFKQMKKMM 104 (104)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998886
No 22
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.98 E-value=1.1e-30 Score=266.32 Aligned_cols=259 Identities=22% Similarity=0.348 Sum_probs=210.0
Q ss_pred hhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEE
Q 008282 107 KENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVI 186 (571)
Q Consensus 107 ~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI 186 (571)
.+.+.+.+++++..|+++||+.+++.++.+.......... .....+.+.+.+.+...+.+.. + + ..++.++
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~-----~~~~~vl~~v~~~l~~~~~~~~--~-~-~~~~~~i 78 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT-----MITEEVIEYILEDMSSHFNTEN--V-F-EKEVQTI 78 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCC-----ccccHHHHHHhcccEEeeCCcc--c-c-cCCCCEE
Confidence 3567788899999999999999999999986533221111 0112222333333332222111 1 1 2245799
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh-CC
Q 008282 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK-KN 265 (571)
Q Consensus 187 ~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~-~~ 265 (571)
+++|++|+||||++..|+..+..+|.+|+++++|.+|.++++|+..+++..+++++.. .++.++ .++++.+.. .+
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l-~~~l~~l~~~~~ 154 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALTYFKEEAR 154 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHH-HHHHHHHHhcCC
Confidence 9999999999999999999998889999999999999999999999999999998754 345444 466666642 47
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc-hHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHH
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 344 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi 344 (571)
+|+|||||||+.+.+...+.++..+.....|++++||+++++ ++++.++++.|+. ++++|+|+||+|++.++|.++++
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~ 233 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHH
Confidence 999999999999999999999999999999999999999964 5789999999985 99999999999999999999999
Q ss_pred HHHhCCCeEEEecCCCC-CCCccCCchhHhhhccCc
Q 008282 345 KEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (571)
Q Consensus 345 ~~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~ 379 (571)
+..++.||.|+++||++ +|++.++++.++++++|.
T Consensus 234 ~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 234 PAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999999 699999999999988873
No 23
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=9.9e-30 Score=269.06 Aligned_cols=251 Identities=26% Similarity=0.314 Sum_probs=196.4
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCC
Q 008282 115 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (571)
Q Consensus 115 ~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~Gv 194 (571)
..+.+.|+++||+..+++++++.+...... .++ ......+.+.|...+... ......-..+.+++|+|++||
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~------~~~-~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~ii~lvGptGv 148 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEGY------DTL-DAAADWAQSVLAANLPVL-DSEDALMERGGVFALMGPTGV 148 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhccc------CCH-HHHHHHHHHHHHhcchhh-cCCCccccCCcEEEEECCCCC
Confidence 567889999999999999999988653110 011 222333333333322211 011111124579999999999
Q ss_pred cHHHHHHHHHHHHH-hcC-CeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 008282 195 GKTTVSAKLANYLK-KQG-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 272 (571)
Q Consensus 195 GKTTtaakLA~~La-~~G-~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIID 272 (571)
|||||+++||..+. +.| .+|++|++|+||+++++|+.+|++..|+++.......+.. ..+..+ .++|+||||
T Consensus 149 GKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~----~~l~~l--~~~DlVLID 222 (374)
T PRK14722 149 GKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ----LALAEL--RNKHMVLID 222 (374)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH----HHHHHh--cCCCEEEEc
Confidence 99999999999876 457 6999999999999999999999999999998765544432 334443 678999999
Q ss_pred CCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH-HHHHHHhhhhc--------CeeEEEEccCCCCCChhHHHH
Q 008282 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA-AALVTTFNIEI--------GITGAILTKLDGDSRGGAALS 343 (571)
Q Consensus 273 TpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a-~~~~~~f~~~~--------~i~GVIlNKlD~~~~~g~~ls 343 (571)
|+|+.+.|..+.+++..+.....+++++||++++++.+. .+.++.|.... ++.|+|+||+|++.++|.+++
T Consensus 223 TaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~ 302 (374)
T PRK14722 223 TIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 302 (374)
T ss_pred CCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHH
Confidence 999999999999999888777778899999999887554 45668887643 589999999999999999999
Q ss_pred HHHHhCCCeEEEecCCCC-CCCccCCchhHhhhccCc
Q 008282 344 VKEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILGM 379 (571)
Q Consensus 344 i~~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG~ 379 (571)
+...+++||.|+++||+| +||...+++.++++.++.
T Consensus 303 ~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~ 339 (374)
T PRK14722 303 TVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCA 339 (374)
T ss_pred HHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhcc
Confidence 999999999999999999 789999999998887763
No 24
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=7.4e-29 Score=266.00 Aligned_cols=247 Identities=25% Similarity=0.368 Sum_probs=198.2
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCC
Q 008282 115 RDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (571)
Q Consensus 115 ~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~Gv 194 (571)
..+.+.|+++||+..++++|++.+....... ...+.+...+.+.|..+ +.. ++ ..++.+++|+|++|+
T Consensus 135 ~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~------~~~~~~~~~l~~~l~~~-~~~--~~---~~~g~vi~lvGpnG~ 202 (420)
T PRK14721 135 MKVLRTLLSAGFSPLLSRHLLEKLPADRDFE------QSLKKTISLLTLNLRTI-GGD--EI---IEQGGVYALIGPTGV 202 (420)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhc-CCc--cc---cCCCcEEEEECCCCC
Confidence 5688999999999999999999987653211 11223334444444321 111 11 124579999999999
Q ss_pred cHHHHHHHHHHHHH-hc-CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 008282 195 GKTTVSAKLANYLK-KQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVD 272 (571)
Q Consensus 195 GKTTtaakLA~~La-~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIID 272 (571)
|||||+++||..+. .. +.+|.++.+|.||.++.+|+..+++.+|+++..... +.+. ..++..+ .++|+|+||
T Consensus 203 GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~---~~dl-~~al~~l--~~~d~VLID 276 (420)
T PRK14721 203 GKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD---IADL-QLMLHEL--RGKHMVLID 276 (420)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC---HHHH-HHHHHHh--cCCCEEEec
Confidence 99999999998654 33 479999999999999999999999999999986543 3333 2344443 689999999
Q ss_pred CCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCC
Q 008282 273 TAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKP 351 (571)
Q Consensus 273 TpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~P 351 (571)
|+|+.+.+..++.++..+.....+++++||++++++ +++.+.+..|. .+++.|+|+||+|++.++|.+++++..+++|
T Consensus 277 TaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lP 355 (420)
T PRK14721 277 TVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASLGIALDAVIRRKLV 355 (420)
T ss_pred CCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCccHHHHHHHHhCCC
Confidence 999999999999999988776678899999999876 45555566666 6999999999999999999999999999999
Q ss_pred eEEEecCCCC-CCCccCCchhHhhhccCch
Q 008282 352 IKLVGRGERM-EDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 352 I~fig~Ge~v-~dl~~f~p~~~~~r~lG~g 380 (571)
|.|+++||+| +||+.|+++.+++++++..
T Consensus 356 i~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 356 LHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred EEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 9999999999 8999999999999988854
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=1.2e-26 Score=252.43 Aligned_cols=241 Identities=27% Similarity=0.304 Sum_probs=191.5
Q ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCc
Q 008282 116 DIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVG 195 (571)
Q Consensus 116 ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvG 195 (571)
.+.+.|++.||+..++++|++++.... .. ......+.+.|.+.+... +..+- ....+|+|+|++|+|
T Consensus 296 ~l~~~L~~~Gvs~~la~~L~~~l~~~~---------~~-~~~~~~l~~~L~~~l~v~--~~~~l-~~G~vIaLVGPtGvG 362 (559)
T PRK12727 296 QALELMDDYGFDAGLTRDVAMQIPADT---------EL-HRGRGLMLGLLSKRLPVA--PVDPL-ERGGVIALVGPTGAG 362 (559)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhhhccc---------ch-hhHHHHHHHHHHHhcCcC--ccccc-cCCCEEEEECCCCCC
Confidence 467889999999999999999886542 11 122345666666655322 12211 235799999999999
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Q 008282 196 KTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDT 273 (571)
Q Consensus 196 KTTtaakLA~~La~~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDT 273 (571)
|||++.+||..+..+ |++|.++++|+||.++.+|+..+++..++++.... ++. .+...+..+ .+||+|||||
T Consensus 363 KTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~---d~~-~L~~aL~~l--~~~DLVLIDT 436 (559)
T PRK12727 363 KTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD---SAE-SLLDLLERL--RDYKLVLIDT 436 (559)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC---cHH-HHHHHHHHh--ccCCEEEecC
Confidence 999999999988765 58999999999999999999999999999887542 222 234555554 5799999999
Q ss_pred CCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 274 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 274 pG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
+|+.+.|..++.++..+.... ....+||+++..+ ++..+.++.|.. .++.|+|+||+|++.++|.++++...+++||
T Consensus 437 aG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI 514 (559)
T PRK12727 437 AGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDHQMPI 514 (559)
T ss_pred CCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHhCCCE
Confidence 999988888888887665443 4678999998654 677777788874 6889999999999999999999999999999
Q ss_pred EEEecCCCC-CCCccCCchhHhhhcc
Q 008282 353 KLVGRGERM-EDLEPFYPDRMAGRIL 377 (571)
Q Consensus 353 ~fig~Ge~v-~dl~~f~p~~~~~r~l 377 (571)
.|+++||+| +||+.|++..+++++.
T Consensus 515 ~yvt~GQ~VPeDL~~A~~~~Lv~r~~ 540 (559)
T PRK12727 515 TWVTDGQRVPDDLHRANAASLVLRLE 540 (559)
T ss_pred EEEeCCCCchhhhhcCCHHHHHHHHH
Confidence 999999999 8999999988887743
No 26
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.94 E-value=4.2e-25 Score=210.45 Aligned_cols=172 Identities=67% Similarity=1.027 Sum_probs=156.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
+++++|++|+||||++.+||..+++.|++|+++++|++|+...+++..+++..+++++......++.+++.+.+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999999999999999887766678888887777776667
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHH
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 344 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi 344 (571)
++|+|||||||..+.+...+.++..+.....++.+++|+++.++++..+.+..|....++.++|+||+|...+.|.++++
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~ 161 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI 161 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence 99999999999988888888898888887779999999999888888888888877788999999999999999999999
Q ss_pred HHHhCCCeEEEe
Q 008282 345 KEVSGKPIKLVG 356 (571)
Q Consensus 345 ~~~~g~PI~fig 356 (571)
+..+++|+.|+|
T Consensus 162 ~~~~~~p~~~~~ 173 (173)
T cd03115 162 RAVTGKPIKFIG 173 (173)
T ss_pred HHHHCcCeEeeC
Confidence 999999999886
No 27
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.80 E-value=2.9e-18 Score=176.75 Aligned_cols=168 Identities=30% Similarity=0.407 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHH
Q 008282 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDE 164 (571)
Q Consensus 85 ~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 164 (571)
++.|.+.|+..+..+.. ......+.+++..|+++||+..++++|++.+.+. .+...+.+.+.+.
T Consensus 113 ~~~lk~~l~~~~~~~~~------~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~----------~~~~~~~~~~~~~ 176 (282)
T TIGR03499 113 LEALRELLERLLAGLAW------LQRDPEGAKLLERLLRAGVSPELARELLEKLPER----------ADAEDAWRWLREA 176 (282)
T ss_pred HHHHHHHHHHHHHhhhh------cccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc----------CCHHHHHHHHHHH
Confidence 34555555555544322 1334567889999999999999999999988642 2334567788899
Q ss_pred HHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-C-CeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 165 L~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G-~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
|.+.+........+ ..++.+|+|+|++|||||||+++||.+++.+ | ++|++|++|+||.++.+|+..|++..|+++.
T Consensus 177 l~~~l~~~~~~~~~-~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~ 255 (282)
T TIGR03499 177 LEKMLPVKPEEDEI-LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK 255 (282)
T ss_pred HHHHhccCCccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee
Confidence 99888632222222 1357899999999999999999999999876 5 9999999999999999999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 008282 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 275 (571)
Q Consensus 243 ~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG 275 (571)
... ++.++ ..++..+ .++|+|||||||
T Consensus 256 ~~~---~~~~l-~~~l~~~--~~~d~vliDt~G 282 (282)
T TIGR03499 256 VAR---DPKEL-RKALDRL--RDKDLILIDTAG 282 (282)
T ss_pred ccC---CHHHH-HHHHHHc--cCCCEEEEeCCC
Confidence 543 34443 4666665 569999999997
No 28
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.63 E-value=4.9e-15 Score=157.00 Aligned_cols=293 Identities=22% Similarity=0.319 Sum_probs=193.8
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc--hhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 186 I~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R--p~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
|+|.|+ +|+||||++..|.++|+++|++|. +|+ |.++|.. .+....|.++++.+.+....+.++..+.+..
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq-----pfKvGPDYIDP~-~H~~atG~~srNLD~~mm~~~~v~~~f~~~~ 76 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ-----PFKVGPDYIDPG-YHTAATGRPSRNLDSWMMGEEGVRALFARAA 76 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc-----ccccCCCccCch-hhhHhhCCccCCCchhhcCHHHHHHHHHHhc
Confidence 677788 999999999999999999999998 776 6667664 3566779999999988877788887777754
Q ss_pred hCCCcEEEEeCCCCCccc---HHHHHHHHHHHhhhCCceEEEEEeCc-chHHHHHHH---HHhhhhcCeeEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALV---TTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d---~~l~~eL~~i~~~~~pd~vlLVvda~-~gq~a~~~~---~~f~~~~~i~GVIlNKlD~~ 335 (571)
++.|+.||++...+... ..-......+.+.++ .+|+||+|+. ..+.+..++ +.|+++++|.|||+|++-+.
T Consensus 77 -~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgse 154 (451)
T COG1797 77 -ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSE 154 (451)
T ss_pred -CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCH
Confidence 78999999998776542 001223344555555 7899999984 445565665 46777999999999999999
Q ss_pred CChhHHHHHHHH-hCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHHHHHcCCCCHHH
Q 008282 336 SRGGAALSVKEV-SGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFND 414 (571)
Q Consensus 336 ~~~g~~lsi~~~-~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~k~~~g~~~led 414 (571)
.+...+..+.+. +++|| +|+.++-++++. | +||||.-...+.. +-++..+....+.+..+|++.
T Consensus 155 rH~~llr~Ale~~~gv~v--lG~lpr~~~l~l--p----~RHLGLV~a~E~~-------~~~~~~~~~a~~v~~~vDld~ 219 (451)
T COG1797 155 RHYELLRDALEEYTGVPV--LGYLPRDDDLEL--P----SRHLGLVPASERL-------ELEAKLEALAEVVEKHVDLDA 219 (451)
T ss_pred HHHHHHHHHhhhcCCCcE--EEEecCCcccCC--c----ccccccccchhhh-------hHHHHHHHHHHHHHhhCCHHH
Confidence 999888888776 88999 888888887765 4 8999965444332 122222344555666799988
Q ss_pred HHHHHHHHHhcCchhHHhhcCCCCCCCChhhh----hHH-----HhhhhhHHHH------HhCCChHhhc-CccccCCCh
Q 008282 415 FLKQTRTVARMGSMSRVIGMIPGMGKITPAQV----REA-----EKSLKIMEAM------IEAMTPEERE-KPELLAESP 478 (571)
Q Consensus 415 l~~ql~~~~k~G~~~~i~~m~Pg~~~~~~~~~----~~~-----~~~~~~~~~i------i~sMt~~Er~-~p~~~~~~~ 478 (571)
+++-...-. ++.--..-.|..++-....+ +.+ +++++-|+.. .+.+..+|.- +-|.
T Consensus 220 l~~ia~~~~---~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~----- 291 (451)
T COG1797 220 LLEIASSAG---PLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDA----- 291 (451)
T ss_pred HHHHHhccC---CCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCE-----
Confidence 887765432 12111111111111000001 011 4455555554 5566666654 2332
Q ss_pred hhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 008282 479 VRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 515 (571)
Q Consensus 479 sR~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~ 515 (571)
|=-|-|-.+---.+ |.+-..|++.++++...
T Consensus 292 -----vYlgGGYPElfA~~-L~~n~~~~~~i~~~~~~ 322 (451)
T COG1797 292 -----VYLGGGYPELFAEE-LSANESMRRAIKAFAAA 322 (451)
T ss_pred -----EEeCCCChHHHHHH-HhhCHHHHHHHHHHHHc
Confidence 33466666554444 44556788888888764
No 29
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.63 E-value=1.6e-14 Score=137.24 Aligned_cols=146 Identities=22% Similarity=0.265 Sum_probs=92.8
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 186 ILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 186 I~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
|+++ ++||+||||++.+||.++++.|++|++||+|++++.....+ . .......++..++.+...
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~---~------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW---R------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---h------------CcchHHHHHHHHHHhhcC
Confidence 4454 77999999999999999999999999999999987542211 0 011233445555555447
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc-h-HHHHHHHHHhhh-hcCeeEEEEccCCCC----CC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QEAAALVTTFNI-EIGITGAILTKLDGD----SR 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-g-q~a~~~~~~f~~-~~~i~GVIlNKlD~~----~~ 337 (571)
+||+|||||||.... ... .+......+.+++|+.+.. . .++.+..+.+.. ...+.|+|+|+++.. .+
T Consensus 67 ~yD~VIiD~pp~~~~--~~~----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTGD--EHL----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCcH--HHH----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 899999999998642 111 1111123478888887632 2 333333333322 456789999999852 11
Q ss_pred ------hhHHHHHHHHhCCCe
Q 008282 338 ------GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 ------~g~~lsi~~~~g~PI 352 (571)
.+....+.+.++.|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPL 161 (169)
T ss_pred cccccCCccHHHHHHHcCCCE
Confidence 124445566666665
No 30
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.62 E-value=1.9e-14 Score=153.66 Aligned_cols=164 Identities=19% Similarity=0.233 Sum_probs=100.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---hhh-----------ccCCceecCC---
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGE-----------QVGVPVYTAG--- 245 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---~~~-----------~~gv~v~~~~--- 245 (571)
++|+++ |+|||||||++++||..|++.|+||++||+|++.|....-+.. ... ..|+.....+
T Consensus 108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~l~ 187 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYLV 187 (369)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHHhc
Confidence 677776 8899999999999999999999999999999999865322210 000 0011100000
Q ss_pred ---C-----CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc--chHHHHHHH
Q 008282 246 ---T-----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAALV 315 (571)
Q Consensus 246 ---~-----~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~--~gq~a~~~~ 315 (571)
. .......+.+.+....|++||||||||||.... ..+ .+...+..|.+++|+... .-.++.+.+
T Consensus 188 ~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd-~~l-----~~~~l~aad~viiV~tp~~~s~~da~~~i 261 (369)
T PRK11670 188 TDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGD-IQL-----TLAQNIPVTGAVVVTTPQDIALIDAKKGI 261 (369)
T ss_pred CcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCch-HHH-----HHhhhccCCeEEEEecCchhHHHHHHHHH
Confidence 0 001123345555443467899999999998642 111 112223347777777652 223444444
Q ss_pred HHhh-hhcCeeEEEEccCCCCCC----------hhHHHHHHHHhCCCeE
Q 008282 316 TTFN-IEIGITGAILTKLDGDSR----------GGAALSVKEVSGKPIK 353 (571)
Q Consensus 316 ~~f~-~~~~i~GVIlNKlD~~~~----------~g~~lsi~~~~g~PI~ 353 (571)
..+. ..+++.|+|+|+.+.... .+....+++.++.|+.
T Consensus 262 ~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll 310 (369)
T PRK11670 262 VMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLL 310 (369)
T ss_pred HHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEE
Confidence 4443 367789999999874321 1235567778888764
No 31
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.60 E-value=5.4e-15 Score=145.81 Aligned_cols=162 Identities=19% Similarity=0.204 Sum_probs=99.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHH-----------HHHH--------------hhhccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-----------QLVI--------------LGEQVG 238 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~d-----------qL~~--------------~~~~~g 238 (571)
++|+++|++||||||++++||.+|+++|+||++||+|++...... .+.. +....|
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 478888999999999999999999999999999999987532210 0000 001135
Q ss_pred CceecCCCCCCH-----------HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 239 VPVYTAGTEVKP-----------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 239 v~v~~~~~~~~p-----------~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
+.+++.+..... ...++ .+..+ .++||||||||+|.+..... ...+. .-..|.+++|+++..
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~-~~~l~----~~~ad~vliv~~p~~ 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGF-AMPIR----EGKADEIYIVTSGEF 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceeccc-ccccc----cccCcEEEEEecccH
Confidence 556554432111 11222 33333 36899999999887632111 00110 002478888887632
Q ss_pred h-----HHHHHHHHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 308 G-----QEAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 308 g-----q~a~~~~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
- ....+.++.+.. ...+.|+|+|+++.......+..+.+.++.|+
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~v 205 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQV 205 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCE
Confidence 1 223334455543 45578999999997644445566777788776
No 32
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.58 E-value=1.4e-14 Score=148.25 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=94.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH------------HHHHHh------------hhccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVIL------------GEQVGV 239 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~------------dqL~~~------------~~~~gv 239 (571)
++|+|+|+|||||||++.+||..|+++|+||++||+|++..... +-+... ....|+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~~i 81 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGDI 81 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCCCe
Confidence 46788899999999999999999999999999999999754321 111000 001234
Q ss_pred ceecCCCCC------CHH----HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc--c
Q 008282 240 PVYTAGTEV------KPS----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--T 307 (571)
Q Consensus 240 ~v~~~~~~~------~p~----~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~--~ 307 (571)
.+++..... ... ..+.+.+..+ +++||||||||+|.+.... +...+ .....|.+++|+.+. .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~-~~~~~----al~aad~vlip~~p~~~s 155 (273)
T PRK13232 82 KCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGG-FAMPI----REGKAKEIYIVASGELMA 155 (273)
T ss_pred EEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECC-Eeccc----cccccceEEEecCchHHH
Confidence 444432110 000 1234555544 3689999999988763210 11000 011247788887652 1
Q ss_pred hHH---HHHHHHHh-hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 308 GQE---AAALVTTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 308 gq~---a~~~~~~f-~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
-.. ..+.+..+ +..+.+.|+|+|+.+..........+.+.++.++
T Consensus 156 l~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~~~e~l~~~~~~~v 204 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQL 204 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHHHHHHHHHHhCCCe
Confidence 122 22333332 3356678999998764333334455666777655
No 33
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.58 E-value=4e-14 Score=141.84 Aligned_cols=160 Identities=24% Similarity=0.345 Sum_probs=95.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-------------HHHHHH--------hhhccCCcee
Q 008282 185 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVI--------LGEQVGVPVY 242 (571)
Q Consensus 185 VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-------------~dqL~~--------~~~~~gv~v~ 242 (571)
+|+|+ ++|||||||++++||.+|+++|++|++||+|++.+.. .+.+.. +....|+.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 55565 7799999999999999999999999999999864221 111100 0011245555
Q ss_pred cCCCCCC-----HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHH
Q 008282 243 TAGTEVK-----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV 315 (571)
Q Consensus 243 ~~~~~~~-----p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~ 315 (571)
+.+.... ..+.+.+.+..+. ++||+|||||||.+.. ..... + ...|.+++|+++... .++....
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~--~~~~~---l---~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLER--DAVTA---L---AAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCH--HHHHH---H---HhCCeEEEEECCCCchHHHHHHHH
Confidence 4432211 1223456666664 6899999999998752 11111 1 224788888887422 2333322
Q ss_pred HHh-hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 316 TTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 316 ~~f-~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
... .....+.++|+|+++.....-....+.+.++.|+.
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~~~~~l 191 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKTELGREEIETILEVPVL 191 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhhhhHHHHHHHhhCCcEE
Confidence 211 22455679999999874322222334455677763
No 34
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.57 E-value=3.5e-14 Score=145.44 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=91.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH------------HHHHHH-----------hhhccCCc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-----------LGEQVGVP 240 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a------------~dqL~~-----------~~~~~gv~ 240 (571)
++|+|+|+|||||||++.+||..|+++|+||++||+|++-... .+-+.. .....|+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~l~ 81 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGGTR 81 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCCCE
Confidence 4788889999999999999999999999999999999874321 111110 00012444
Q ss_pred eecCCC------CCCHHHHHH-HHHHHHH----hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc--
Q 008282 241 VYTAGT------EVKPSQIAK-QGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-- 307 (571)
Q Consensus 241 v~~~~~------~~~p~~v~~-~~l~~~~----~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-- 307 (571)
+++... ........+ ..++.+. .++||||||||+|.+... .+.........|.+++++.+..
T Consensus 82 ~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~-----~l~~~~a~~aad~vlIp~~~e~~s 156 (274)
T PRK13235 82 CTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCG-----GFAMPIRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred EEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccC-----CcccccccccccEEEEEecCchhH
Confidence 444321 001111111 2333331 367999999998765311 1100000012477888876521
Q ss_pred --h-HHHHHHHHHh--hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 308 --G-QEAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 308 --g-q~a~~~~~~f--~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
+ ....+.+... +..+.+.|+|+|+............+.+.++.++
T Consensus 157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~~~e~~~~l~~~~~~~l 206 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKIGTQM 206 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCchHHHHHHHHHHcCCce
Confidence 1 2223333333 3456678999997643223334445666677655
No 35
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.55 E-value=1.7e-13 Score=134.17 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=93.3
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH---------Hh-------------hhccC
Q 008282 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------IL-------------GEQVG 238 (571)
Q Consensus 182 ~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~---------~~-------------~~~~g 238 (571)
.+++|+|+ +++|+||||++.+||..|++.|++|++||+|++.+.....+. .+ ....+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~ 95 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIEN 95 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCC
Confidence 36788888 559999999999999999999999999999998765322110 00 01124
Q ss_pred CceecCCCC-CCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-ch-HH
Q 008282 239 VPVYTAGTE-VKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QE 310 (571)
Q Consensus 239 v~v~~~~~~-~~p~~-----v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-~g-q~ 310 (571)
+.+++.+.. ..+.. .+++.++.++ ..||+||||||+....... ..+.. ..|.+++|+++. +. .+
T Consensus 96 l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~-----~~~~~--~~D~vilV~~~~~~~~~~ 167 (204)
T TIGR01007 96 LFVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDA-----AIIAR--ACDASILVTDAGEIKKRD 167 (204)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchH-----HHHHH--hCCeEEEEEECCCCCHHH
Confidence 445544332 22222 3456677775 7899999999985432111 11211 248999999873 33 33
Q ss_pred HHHHHHHhhh-hcCeeEEEEccCCCC
Q 008282 311 AAALVTTFNI-EIGITGAILTKLDGD 335 (571)
Q Consensus 311 a~~~~~~f~~-~~~i~GVIlNKlD~~ 335 (571)
+...+..+.. ...+.|+|+||++..
T Consensus 168 ~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 168 VQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 3333333322 356899999999854
No 36
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.55 E-value=9.6e-13 Score=134.65 Aligned_cols=142 Identities=20% Similarity=0.302 Sum_probs=93.8
Q ss_pred CCCEEEEEEc-CCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------------------hhhccC
Q 008282 181 SRPTVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------------------LGEQVG 238 (571)
Q Consensus 181 ~~~~VI~ivG-~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------------------~~~~~g 238 (571)
.++++|+|++ .+|+||||++.+||..+++.|++|++||+|+.+|.....+.. .....+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~ 180 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALEN 180 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCC
Confidence 3567888885 599999999999999999999999999999887653221100 001124
Q ss_pred CceecCCCC-CCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCCcc-cHHHHHHHHHHHhhhCCceEEEEEeC--cchH
Q 008282 239 VPVYTAGTE-VKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQI-DKAMMDELKDVKRVLNPTEVLLVVDA--MTGQ 309 (571)
Q Consensus 239 v~v~~~~~~-~~p~~-----v~~~~l~~~~~~~~DvIIIDTpG~l~~-d~~l~~eL~~i~~~~~pd~vlLVvda--~~gq 309 (571)
+.+++.+.. .++.+ .+...+..++ +.|||||||||+.... |...+ .. ..|.+++|+.+ +...
T Consensus 181 l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~------~~--~~d~vilV~~~~~t~~~ 251 (274)
T TIGR03029 181 LSVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIV------AT--RARGTLIVSRVNETRLH 251 (274)
T ss_pred EEEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHH------HH--hCCeEEEEEECCCCCHH
Confidence 555555432 23333 2356677765 7899999999997643 22222 11 24788999987 3334
Q ss_pred HHHHHHHHhhh-hcCeeEEEEcc
Q 008282 310 EAAALVTTFNI-EIGITGAILTK 331 (571)
Q Consensus 310 ~a~~~~~~f~~-~~~i~GVIlNK 331 (571)
++...++.+.. ..++.|+|+|+
T Consensus 252 ~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 252 ELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC
Confidence 44444444432 57789999996
No 37
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.54 E-value=6.6e-14 Score=142.22 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=92.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH------------HHHHHhhh------------ccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVILGE------------QVGV 239 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~------------dqL~~~~~------------~~gv 239 (571)
++|+|+|+|||||||++++||.+|+++|+||++||+|++..... +.+...+. ..|+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 81 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGGI 81 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCCCe
Confidence 46777899999999999999999999999999999999853321 11110000 1245
Q ss_pred ceecCCCCCC-----------HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 240 PVYTAGTEVK-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 240 ~v~~~~~~~~-----------p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
.+++.+.... ...+. +.+..+ .++||||||||+|.+.... +...+ .....|.+++|+.+..-
T Consensus 82 ~~ip~~~~~~~~~~~~~~~~~~~~~l-~~l~~~-~~~yD~viID~~g~~~~~~-~~~~~----~~~aaD~vlip~~p~~~ 154 (270)
T cd02040 82 KCVESGGPEPGVGCAGRGVITAINLL-EELGAY-EDDLDFVIYDVLGDVVCGG-FAMPI----REGKAQEIYIVTSGEMM 154 (270)
T ss_pred EEEeCCCCCCCCCCcCcchhhHHHHH-HhcCcc-ccCCCEEEEecccCcccCC-ccccc----ccccccEEEEEecCchH
Confidence 5554432110 11111 222222 2579999999987652111 10000 00124778888876321
Q ss_pred --H---HHHHHHHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 309 --Q---EAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 309 --q---~a~~~~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
. ...+.+..+.. ...+.|||+|+............+.+.++.++
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~~~~~~~~l~~~~g~~v 205 (270)
T cd02040 155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQM 205 (270)
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEecCCChhHHHHHHHHHHHcCCCe
Confidence 2 22233333432 35677899998543333344555667778776
No 38
>PHA02518 ParA-like protein; Provisional
Probab=99.54 E-value=2.5e-13 Score=132.56 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=91.4
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
+|+|+ .+|||||||++++||.+|+++|++|++||+|+++..... +.. .. .+.++++.... ...+...+..+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~-~~-~~~~~i~~~~~---~~~~~~~l~~~~- 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEA-RE-EGEPLIPVVRM---GKSIRADLPKVA- 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHh-cc-cCCCCCchhhc---cHHHHHHHHHHh-
Confidence 56776 569999999999999999999999999999999865532 111 11 11112211110 122344455554
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-----HHHHHHHH---HhhhhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVT---TFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-----q~a~~~~~---~f~~~~~i~GVIlNKlD~~ 335 (571)
..||+|||||||... ..... +.. ..|.+++++.+... ....+.+. .++......++|+|+.+..
T Consensus 75 ~~~d~viiD~p~~~~---~~~~~---~l~--~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDS---ELARA---ALR--IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCcc---HHHHH---HHH--HCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 689999999999853 12211 111 23777888776421 12222222 2333455678899998754
Q ss_pred CC-hhHHHHHHHHhCCCe
Q 008282 336 SR-GGAALSVKEVSGKPI 352 (571)
Q Consensus 336 ~~-~g~~lsi~~~~g~PI 352 (571)
.. ...+.......+.|+
T Consensus 147 ~~~~~~~~~~l~~~~~~~ 164 (211)
T PHA02518 147 TQLYREARKALAGYGLPI 164 (211)
T ss_pred chHHHHHHHHHHHcCchh
Confidence 33 234444555556665
No 39
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.53 E-value=9.9e-14 Score=141.98 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHH------------HHHHHh------------hhccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAI------------DQLVIL------------GEQVG 238 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~------------dqL~~~------------~~~~g 238 (571)
++|+|+|+|||||||++.+||..|++ +|+||++||+|++..... +-+... ....|
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCCCC
Confidence 57888899999999999999999997 599999999999864321 111000 00124
Q ss_pred CceecCCCCCC------HHHH----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 239 VPVYTAGTEVK------PSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 239 v~v~~~~~~~~------p~~v----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
+.+++.+.... .... ++++++.+ .++||||||||+|.+..+ .+..-+.. ...|.+++|+++..-
T Consensus 83 l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~iliD~~~~~~~~-al~~~~~~----~aad~viIp~~p~~~ 156 (275)
T PRK13233 83 IRCVESGGPEPGVGCAGRGVITAIDLMEENGAY-TDDLDFVFFDVLGDVVCG-GFAMPIRD----GKAQEVYIVASGEMM 156 (275)
T ss_pred cEEEECCCCCCCCCCCCcchhHHHHHHHHcCCc-cCCCCEEEEecCCceeec-cccccchh----ccCceEEEeccccHH
Confidence 55555432211 1112 23344434 367999999997754211 11100000 124778888876321
Q ss_pred --HHH---HHHHHH--hhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 309 --QEA---AALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 309 --q~a---~~~~~~--f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
..+ .+.+.. .+..+.+.|+|+|+............+.+.++.++
T Consensus 157 sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 157 AIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQM 207 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCcHHHHHHHHHHHcCCce
Confidence 222 222221 23466788999997642222334455666677655
No 40
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.53 E-value=4.9e-13 Score=136.43 Aligned_cols=159 Identities=22% Similarity=0.267 Sum_probs=93.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-----------HHHHHH--------------hhhccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGEQVG 238 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-----------~dqL~~--------------~~~~~g 238 (571)
+||+++|+|||||||++.+||.+|+++|+||++||+|++.... .+-+.. +....|
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 82 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYNG 82 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCCC
Confidence 5888889999999999999999999999999999999874221 111100 000135
Q ss_pred CceecCCCCCC--------HHHHHHHHHHHH-HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-
Q 008282 239 VPVYTAGTEVK--------PSQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG- 308 (571)
Q Consensus 239 v~v~~~~~~~~--------p~~v~~~~l~~~-~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g- 308 (571)
+.+++.+.... .... ...+..+ ..++||+|||||+|.+.... +... ....|.+++++.+...
T Consensus 83 l~~ip~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~~~------l~~AD~viip~~~~~~s 154 (270)
T PRK13185 83 VDCVEAGGPPAGTGCGGYVVGET-VKLLKEHHLLDDYDVILFDVLGDVVCGG-FAAP------LQYADYALIVTANDFDS 154 (270)
T ss_pred cEEEECCCCCCCCCccchhHHHH-HHHHHhcCccccCCEEEEecCCCcccCc-ccch------hhhCcEEEEEecCchhh
Confidence 56664432211 1111 1122221 13579999999988764221 1111 1124777888766321
Q ss_pred ----HHHHHHHHH--hhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 309 ----QEAAALVTT--FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 309 ----q~a~~~~~~--f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
+...+.+.. .+..+.+.|+|+|+.+.. ..+..+.+.++.++.
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~---~~~~~~~~~~g~~vl 202 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT---DLIDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccChH---HHHHHHHHHcCCCEE
Confidence 223333322 234556789999998742 334556667777763
No 41
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.53 E-value=2.3e-13 Score=139.21 Aligned_cols=146 Identities=25% Similarity=0.292 Sum_probs=94.0
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhh---------hc--------cCCc---e
Q 008282 183 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------EQ--------VGVP---V 241 (571)
Q Consensus 183 ~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~---------~~--------~gv~---v 241 (571)
.++|+++ |++|+||||++.+||..+++.|+||+++|+|.+.|....-+..-. .. .++. +
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 4566665 889999999999999999999999999999999877544332100 00 0011 1
Q ss_pred ecCC-CCCCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc--chHHHHH
Q 008282 242 YTAG-TEVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEAAA 313 (571)
Q Consensus 242 ~~~~-~~~~p~~-----v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~--~gq~a~~ 313 (571)
.... ....|.+ .+++.+..+.|.+||||||||||....... .-+.. .++.+++|+... ...++.+
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~-----~i~~~--~~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADA-----TVLQR--IPDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHH-----HHHhc--cCCeEEEEeCCccchHHHHHH
Confidence 1111 1123322 346888888887899999999998763211 11111 246788887662 2234444
Q ss_pred HHHHhhh-hcCeeEEEEccCCCC
Q 008282 314 LVTTFNI-EIGITGAILTKLDGD 335 (571)
Q Consensus 314 ~~~~f~~-~~~i~GVIlNKlD~~ 335 (571)
....+.. ..++.|||.|+.+..
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCc
Confidence 4444432 567899999988744
No 42
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.52 E-value=2.6e-13 Score=140.86 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=95.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH------------HHHHHH-------------hhhcc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-------------LGEQV 237 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a------------~dqL~~-------------~~~~~ 237 (571)
.++|.|.|+|||||||++++||..|+++|+||++||+|++-+.. .+-+.. .....
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~~~~ 85 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTGFR 85 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhheeCCC
Confidence 47999999999999999999999999999999999999864321 111110 11123
Q ss_pred CCceecCCCC------CCHHHHHHHHHHHHH----hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 238 GVPVYTAGTE------VKPSQIAKQGLEEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 238 gv~v~~~~~~------~~p~~v~~~~l~~~~----~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
|+.+++.+.. ....... .++.+. +++||||+|||++...... +...+. ....|.+++|+.+..
T Consensus 86 gv~llpa~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~yD~vliD~~~~~~~~~-~~~~~~----l~aAD~vIIvttpe~ 158 (296)
T PRK13236 86 GVKCVESGGPEPGVGCAGRGIIT--AINFLEENGAYQDLDFVSYDVLGDVVCGG-FAMPIR----EGKAQEIYIVTSGEM 158 (296)
T ss_pred CeEEEECCCCCCCCCCcceeehh--hhHHHHhcCccccCCEEEEeccccceecc-ccccch----hccCCEEEEecCcch
Confidence 5666654311 1111111 233332 3689999999976532111 110000 123478888876622
Q ss_pred --hHHHHHH---H-HHh-hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 308 --GQEAAAL---V-TTF-NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 308 --gq~a~~~---~-~~f-~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
-.++... + +.. +..+.+.|+|+|+.+.......+..+.+.++.++
T Consensus 159 ~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~~~~ile~l~~~~g~~v 210 (296)
T PRK13236 159 MAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQM 210 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcchHHHHHHHHHHhCccc
Confidence 1222211 1 121 3456788999999654433334456667777665
No 43
>CHL00175 minD septum-site determining protein; Validated
Probab=99.51 E-value=4.9e-13 Score=137.25 Aligned_cols=164 Identities=16% Similarity=0.256 Sum_probs=97.6
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH-----------Hhh-------------hc
Q 008282 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-----------ILG-------------EQ 236 (571)
Q Consensus 182 ~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~-----------~~~-------------~~ 236 (571)
..++|+|+ |+|||||||++++||.+|++.|++|++||+|++.+.....+. .+. ..
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~ 93 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW 93 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence 35677777 679999999999999999999999999999997432211100 000 01
Q ss_pred cCCceecCCCCCC----HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HH
Q 008282 237 VGVPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE 310 (571)
Q Consensus 237 ~gv~v~~~~~~~~----p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~ 310 (571)
.++.+++.+.... ..+.+...++.+....||+|||||||.+.. .....+ . ..|.+++|+++... .+
T Consensus 94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~--~~~~~l----~--~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDV--GFINAI----A--PAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCH--HHHHHH----H--hcCeeEEEcCCChHHHHH
Confidence 2333333322111 112355666666533899999999998742 222211 1 24788888877432 33
Q ss_pred HHHHHHHhhh-hcCeeEEEEccCCCCCCh----hHHHHHHHHhCCCeE
Q 008282 311 AAALVTTFNI-EIGITGAILTKLDGDSRG----GAALSVKEVSGKPIK 353 (571)
Q Consensus 311 a~~~~~~f~~-~~~i~GVIlNKlD~~~~~----g~~lsi~~~~g~PI~ 353 (571)
+......+.. .....++|+|+++..... -....+...++.|+.
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPLL 213 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCeE
Confidence 3333333332 223468999999864211 123346667787763
No 44
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.51 E-value=3.5e-13 Score=138.37 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=90.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-----------HHHHHH------------hhhccCCc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI------------LGEQVGVP 240 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-----------~dqL~~------------~~~~~gv~ 240 (571)
++|+|+|+|||||||++.+||..|+++|+||++||+|++.... .+-+.. +....|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~~~l~ 81 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGFNGIY 81 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCCCCcE
Confidence 4788889999999999999999999999999999999984221 111110 00013445
Q ss_pred eecCCCCC------CHHHH----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--
Q 008282 241 VYTAGTEV------KPSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-- 308 (571)
Q Consensus 241 v~~~~~~~------~p~~v----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-- 308 (571)
+++.+... ....+ ..+.+..+...+||||||||+|.+.... +.........|.+++++.+...
T Consensus 82 lipa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~-----l~~~~~~~aAD~vlIp~~p~~~si 156 (279)
T PRK13230 82 CVESGGPEPGYGCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGG-----FAMPLQKGLADDVYIVTTCDPMAI 156 (279)
T ss_pred EEECCCCCCCCCcCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCC-----ccccccccccceEEEeccchHHHH
Confidence 55443221 01111 1111112222479999999988653211 0000001124788888876321
Q ss_pred H---HHHHHHHHhh--hhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 309 Q---EAAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 309 q---~a~~~~~~f~--~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
. ...+.+..+. ....+.|||.|.-...........+++.++.++.
T Consensus 157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~~~~~~~~e~l~~~~g~~vl 206 (279)
T PRK13230 157 YAANNICKGIKRFAKRGKSALGGIIYNGRSVIDAPDIVEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEeccCCCchhHHHHHHHHHhCCcEE
Confidence 2 2223333332 2455677775532221122345556677887763
No 45
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.51 E-value=1.7e-13 Score=142.13 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=95.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH------------HHHHHH-------------hhhcc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA------------IDQLVI-------------LGEQV 237 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a------------~dqL~~-------------~~~~~ 237 (571)
-++|+|.|+|||||||++.+||..|+++|+||++||+|++.... .+-+.. +....
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 83 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheecCC
Confidence 46888889999999999999999999999999999999875332 111100 01123
Q ss_pred CCceecCCCCC------CHHHHHH-HHHHHHH-hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc-h
Q 008282 238 GVPVYTAGTEV------KPSQIAK-QGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G 308 (571)
Q Consensus 238 gv~v~~~~~~~------~p~~v~~-~~l~~~~-~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-g 308 (571)
|+.+++.+... .....++ ..++.+. .++||||||||+|.+... .+...+ .....|.+++++.+.. .
T Consensus 84 gl~lipa~~~~~~~~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~n-al~~~~----~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCG-GFAMPI----RENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CeEEEECCCCCCCCCCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceEC-CCcccc----ccccCceEEEecCccHHH
Confidence 55555443111 1122233 3454432 258999999997754211 111000 0012478888887632 1
Q ss_pred ----HHHHHHHHHh--hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 309 ----QEAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 309 ----q~a~~~~~~f--~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
....+.+... +..+.+.|+|+|+............+.+.++.++
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~~~~~~e~l~e~~g~~l 208 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAARLGSKL 208 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCchHHHHHHHHHHHhCCce
Confidence 2222233333 2246678999997654433334445566677765
No 46
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.50 E-value=2.9e-13 Score=140.17 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=92.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-----------HHHHH----hh----------hccCCc
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVI----LG----------EQVGVP 240 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-----------dqL~~----~~----------~~~gv~ 240 (571)
|+++|+|||||||++.+||..|++.|+||++||+|++..... +-+.. .. ...|+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 889999999999999999999999999999999998753221 10100 00 012455
Q ss_pred eecCCCCCCHH-------HHHHHHHHHHH-hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HH
Q 008282 241 VYTAGTEVKPS-------QIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE 310 (571)
Q Consensus 241 v~~~~~~~~p~-------~v~~~~l~~~~-~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~ 310 (571)
+++.+...... ......++.+. .++||||||||+|.+... .+... +...|.+++++++... ..
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~-a~~aa------l~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCG-GFAAP------LNYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceec-hhhhh------hhcCCEEEEEecCCHHHHHH
Confidence 55443221110 00011222222 147999999998875321 11111 1224788888876322 22
Q ss_pred H---HHHHHHh--hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 311 A---AALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 311 a---~~~~~~f--~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
+ .+.++.. +..+.+.|+|+|+++.. ..+....+.++.|+.
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~---~~~~~~~~~~~~~vl 200 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKR---DLIDKYVEACPMPVL 200 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCch---hHHHHHHHHcCCceE
Confidence 2 2222322 22455789999999843 334445667777763
No 47
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.50 E-value=4.2e-13 Score=137.39 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=91.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH------------HHHHH------------hhhccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI------------DQLVI------------LGEQVGV 239 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~------------dqL~~------------~~~~~gv 239 (571)
++|+++|+|||||||++.+||..|+++|++|++||+|++-..+. +-+.. .....|+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l 80 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGGI 80 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCCE
Confidence 37889999999999999999999999999999999998753221 11110 0001244
Q ss_pred ceecCCCCC------CHHHH----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc-h
Q 008282 240 PVYTAGTEV------KPSQI----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G 308 (571)
Q Consensus 240 ~v~~~~~~~------~p~~v----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-g 308 (571)
.+++.+... ..... ..+.+..+. ++||||||||+|...... +...+ .....|.+++++.+.. .
T Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~-~~~~~----~~~aAD~viip~~p~~~s 154 (275)
T TIGR01287 81 RCVESGGPEPGVGCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGG-FAMPI----REGKAQEIYIVTSGEMMA 154 (275)
T ss_pred EEEeCCCCCccCCCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecc-eeecc----ccccccEEEEEecchHHH
Confidence 444432111 11111 122333343 589999999987653211 10000 0012377888877632 1
Q ss_pred -HH---HHHHHHHhh--hhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 309 -QE---AAALVTTFN--IEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 309 -q~---a~~~~~~f~--~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
.. ..+.+..+. ....+.++|+|+............+...++.++
T Consensus 155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~~~~~~e~l~~~~~~~v 204 (275)
T TIGR01287 155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQL 204 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCchHHHHHHHHHHHhCCce
Confidence 22 222223332 245567888887433222333455666677765
No 48
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.49 E-value=1.4e-12 Score=132.87 Aligned_cols=158 Identities=24% Similarity=0.263 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh-----------HHHHHHH----hh----------hccCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-----------AIDQLVI----LG----------EQVGV 239 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~-----------a~dqL~~----~~----------~~~gv 239 (571)
+|+++|+|||||||++.+||..|+++|+||++||+|++-.. ..+-+.. .. ...|+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 57888999999999999999999999999999999986321 1111110 00 01355
Q ss_pred ceecCCCCCCH-------HHHHHHHHHHH-HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--H
Q 008282 240 PVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 309 (571)
Q Consensus 240 ~v~~~~~~~~p-------~~v~~~~l~~~-~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q 309 (571)
.+++.+..... .......++.+ ...+||+|||||+|.+.... +... +...|.+++++.+... .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~~~a------l~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-FAAP------LNYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-chhh------hhhcCEEEEEecCCcccHH
Confidence 56544322110 00001122221 12579999999998764211 1111 1124788888876321 2
Q ss_pred ---HHHHHHHHh--hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 310 ---EAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 310 ---~a~~~~~~f--~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
...+.+... +..+.+.|+|+|+++.. ..+..+.+.++.|+
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~---~~i~~~~~~~~~~v 199 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT---DLIDKFVEAVGMPV 199 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH---HHHHHHHHhCCCCE
Confidence 222222222 23456688999999853 23344556677776
No 49
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.47 E-value=1.6e-12 Score=130.19 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=91.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-------------HHHH--------HhhhccCCcee
Q 008282 185 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLV--------ILGEQVGVPVY 242 (571)
Q Consensus 185 VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-------------dqL~--------~~~~~~gv~v~ 242 (571)
+|+|+ ++||+||||++.+||..|+++|+||++||+|++.+... +.+. .+....++.++
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~i 82 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLFL 82 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEEe
Confidence 56666 57999999999999999999999999999999864210 0000 00112345555
Q ss_pred cCCCCCC---------HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHH
Q 008282 243 TAGTEVK---------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEA 311 (571)
Q Consensus 243 ~~~~~~~---------p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a 311 (571)
+.+.... ....+++.++.+....||+|||||||.... ... .+. ...|.+++|+.+... ..+
T Consensus 83 p~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~---~~~---~~l--~~ad~vii~~~~~~~s~~~~ 154 (246)
T TIGR03371 83 PFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSP---ITR---QAL--AAADLVLVVVNADAACYATL 154 (246)
T ss_pred cCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchH---HHH---HHH--HhCCeEEEEeCCCHHHHHHH
Confidence 4332111 122345566666544469999999997642 111 111 124788888876422 222
Q ss_pred HHHHHHhhhh--cC-eeEEEEccCCCCCC-hhHHH-HHHHHhCCCe
Q 008282 312 AALVTTFNIE--IG-ITGAILTKLDGDSR-GGAAL-SVKEVSGKPI 352 (571)
Q Consensus 312 ~~~~~~f~~~--~~-i~GVIlNKlD~~~~-~g~~l-si~~~~g~PI 352 (571)
...+..+... .. ..++|+|++|.... ...+. .+.+.++.++
T Consensus 155 ~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~~~~~~~~~ 200 (246)
T TIGR03371 155 HQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVLRQTLGSRL 200 (246)
T ss_pred HHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHHHHHhcccc
Confidence 2122222221 12 25799999996543 22222 2444556653
No 50
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.47 E-value=3.2e-13 Score=129.72 Aligned_cols=143 Identities=23% Similarity=0.357 Sum_probs=87.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---hhh--------ccCCceec--CCCCCCHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGE--------QVGVPVYT--AGTEVKPS 251 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---~~~--------~~gv~v~~--~~~~~~p~ 251 (571)
|.+..++||+||||++++||.+|+++|++|++||+|++.+....-... ..+ ...+.... .+......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDP 80 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHH
Confidence 345567899999999999999999999999999999988765321100 000 00000000 00000123
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HH---HHHHHHHhhhhcCeeE
Q 008282 252 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE---AAALVTTFNIEIGITG 326 (571)
Q Consensus 252 ~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~---a~~~~~~f~~~~~i~G 326 (571)
..+++.++.+....||+||||||+.+... ...+ ...+|.+++++++... .. ....+..+.....+.+
T Consensus 81 ~~l~~~l~~l~~~~yD~iiiD~~~~~~~~------~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 152 (195)
T PF01656_consen 81 ELLREILESLIKSDYDYIIIDTPPGLSDP------VRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIG 152 (195)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECSSSSHH------HHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEE
T ss_pred HHHHHHHHHhhhccccceeecccccccHH------HHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEE
Confidence 34667777765556999999999987632 1111 1235788888887432 22 2233333333345789
Q ss_pred EEEccCCCC
Q 008282 327 AILTKLDGD 335 (571)
Q Consensus 327 VIlNKlD~~ 335 (571)
+|+|+++..
T Consensus 153 vv~N~v~~~ 161 (195)
T PF01656_consen 153 VVINRVDPG 161 (195)
T ss_dssp EEEEEETSC
T ss_pred EEEeeeCCC
Confidence 999999865
No 51
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.47 E-value=3.2e-12 Score=128.26 Aligned_cols=94 Identities=20% Similarity=0.145 Sum_probs=62.8
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+||+|. .+|||||||++.+||.+|+++|++|++||+|+++..... ..........+.............+...++.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KENALRSNTWDPACEVYAADELPLLEAAYEDAE 80 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH-HHhhccccCCCccceecCCCHHHHHHHHHHHHh
Confidence 366666 669999999999999999999999999999999875422 111111100111000011123345566666665
Q ss_pred hCCCcEEEEeCCCCCc
Q 008282 263 KKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~ 278 (571)
.++||||||||||...
T Consensus 81 ~~~yD~iiID~pp~~~ 96 (231)
T PRK13849 81 LQGFDYALADTHGGSS 96 (231)
T ss_pred hCCCCEEEEeCCCCcc
Confidence 5689999999999874
No 52
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.47 E-value=1.8e-12 Score=127.52 Aligned_cols=140 Identities=22% Similarity=0.374 Sum_probs=89.6
Q ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHH------------HH-------Hh---hhcc
Q 008282 182 RPTVILLAG-LQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQ------------LV-------IL---GEQV 237 (571)
Q Consensus 182 ~~~VI~ivG-~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dq------------L~-------~~---~~~~ 237 (571)
..++|+|++ ++|+||||++.+||.+|++ .|++|++||+|++.+..... +. .. ....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 356888885 5999999999999999996 69999999999887543211 10 00 0012
Q ss_pred CCceecCCCCC-CHH-----HHHHHHHHHHHhCCC--cEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-ch
Q 008282 238 GVPVYTAGTEV-KPS-----QIAKQGLEEAKKKNV--DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG 308 (571)
Q Consensus 238 gv~v~~~~~~~-~p~-----~v~~~~l~~~~~~~~--DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-~g 308 (571)
++.+++.+... .+. +.+.+.++.++ +.| ||||||||+...... ...+... .|.+++|+.+. +.
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~-----~~~l~~~--aD~viiV~~~~~~~ 185 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFSE-----ARALARL--VGQIVLVVEEGRTT 185 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchhH-----HHHHHHh--CCEEEEEEECCCCC
Confidence 34455443322 121 23456677665 456 999999999875311 1112121 48889999873 33
Q ss_pred -HHHHHHHHHhhhhcCeeEEEEc
Q 008282 309 -QEAAALVTTFNIEIGITGAILT 330 (571)
Q Consensus 309 -q~a~~~~~~f~~~~~i~GVIlN 330 (571)
..+.+.+.... ..++.|+|+|
T Consensus 186 ~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeC
Confidence 44444444444 7899999998
No 53
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.47 E-value=1.8e-12 Score=149.91 Aligned_cols=149 Identities=26% Similarity=0.374 Sum_probs=101.5
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------------------hhhccC
Q 008282 181 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------------------LGEQVG 238 (571)
Q Consensus 181 ~~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------------------~~~~~g 238 (571)
.++++|+|++. +|+||||++.+||..|+..|+||++||+|+++|.....+.. .....+
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 45789999987 89999999999999999999999999999998764332210 001124
Q ss_pred CceecCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC-cch-HH
Q 008282 239 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QE 310 (571)
Q Consensus 239 v~v~~~~~-~~~p~~v-----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda-~~g-q~ 310 (571)
+.+++.+. ..+|.++ +...++.++ ..||+|||||||.+...+... +.. ..|.+++|+.+ .+. .+
T Consensus 609 l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~-----la~--~ad~~llVvr~~~t~~~~ 680 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-----VGR--SVGTSLLVARFGLNTAKE 680 (726)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH-----HHH--hCCeEEEEEeCCCCCHHH
Confidence 55665543 2345543 356666665 689999999999987532221 111 24788899876 333 44
Q ss_pred HHHHHHHhh-hhcCeeEEEEccCCCCCC
Q 008282 311 AAALVTTFN-IEIGITGAILTKLDGDSR 337 (571)
Q Consensus 311 a~~~~~~f~-~~~~i~GVIlNKlD~~~~ 337 (571)
+...+..+. ....+.|+|+|+++....
T Consensus 681 ~~~~~~~l~~~~~~~~G~VlN~~~~~~~ 708 (726)
T PRK09841 681 VSLSMQRLEQAGVNIKGAILNGVIKRAS 708 (726)
T ss_pred HHHHHHHHHhCCCceEEEEEeCcccCcc
Confidence 444444443 256778999999986543
No 54
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.46 E-value=2.3e-12 Score=123.29 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCcee--cCCCCCCH---------HH-
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY--TAGTEVKP---------SQ- 252 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~--~~~~~~~p---------~~- 252 (571)
|.+..|++|+||||++++||..| ++|++||+|+++|.....+. .....+..+. ......++ ..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLK-PEIEEEEDFIVGGKKAVIDPELCISCGLCGKL 76 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcC-CCccccccceecCCceEEchhhhccccchHHH
Confidence 44556889999999999999999 79999999999877533221 1101111111 00000000 11
Q ss_pred --HHHHHHH-HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eE
Q 008282 253 --IAKQGLE-EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TG 326 (571)
Q Consensus 253 --v~~~~l~-~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~G 326 (571)
.+.+.+. ....++||||||||||.... ... ... ...|.+++|+.+... .++....+.+. ..++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~----~~l--~~aD~vliv~~~~~~~~~~~~~~~~~l~-~~~~~~~ 147 (179)
T cd03110 77 VTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVI----ASL--TGADAALLVTEPTPSGLHDLERAVELVR-HFGIPVG 147 (179)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHH----HHH--HcCCEEEEEecCCcccHHHHHHHHHHHH-HcCCCEE
Confidence 1111111 11237899999999988742 111 111 234788888877422 33333333222 2232 47
Q ss_pred EEEccCCCCCC-hhHHHHHHHHhCCCe
Q 008282 327 AILTKLDGDSR-GGAALSVKEVSGKPI 352 (571)
Q Consensus 327 VIlNKlD~~~~-~g~~lsi~~~~g~PI 352 (571)
+|+||+|.... ...+....+.+|.|+
T Consensus 148 vV~N~~~~~~~~~~~~~~~~~~~~~~v 174 (179)
T cd03110 148 VVINKYDLNDEIAEEIEDYCEEEGIPI 174 (179)
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCe
Confidence 99999997543 334555667778887
No 55
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.46 E-value=9.7e-13 Score=134.10 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-----------HHHHHH----hh----------hccCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI----LG----------EQVGV 239 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-----------~dqL~~----~~----------~~~gv 239 (571)
+|++.|+|||||||++.+||.+|+++|+||++||+|++-... .+-+.. +. ...|+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGGV 81 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCCe
Confidence 577779999999999999999999999999999999874211 111100 00 01355
Q ss_pred ceecCCCCCCH-------HHHHHHHHHHH-HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--H
Q 008282 240 PVYTAGTEVKP-------SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 309 (571)
Q Consensus 240 ~v~~~~~~~~p-------~~v~~~~l~~~-~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q 309 (571)
.+++.+..... .......+... ..++||+|||||+|.+...... .. ....|.+++++.+... .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~~-~~------l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 82 DCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDVLGDVVCGGFA-TP------LQYADYALVVAANDFDALF 154 (268)
T ss_pred EEEecCCCCCCCcccceehhhhHHHhhhccccccCCEEEEecCCccccCccc-cc------hhhcCEEEEEecCchhHHH
Confidence 55543322110 00001122221 1357999999999876321110 00 1124777777765321 1
Q ss_pred ---HHHHHHHHh--hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 310 ---EAAALVTTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 310 ---~a~~~~~~f--~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
...+.+... +..+.+.|||+|+++.. .....+.+.++.|+.
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~---~~~~~~~~~~~~~vl 200 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT---DLIERFNERVGMPVL 200 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH---HHHHHHHHHcCCCEE
Confidence 222222222 33466789999999865 233445566777763
No 56
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.45 E-value=5.3e-13 Score=131.57 Aligned_cols=164 Identities=24% Similarity=0.297 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHH----------------HHHh--------------
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQ----------------LVIL-------------- 233 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dq----------------L~~~-------------- 233 (571)
+|+++|++||||||+++-|+..|.++ |++|++||+|+ -++..++ ++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 68999999999999999988877766 49999999997 2222111 1100
Q ss_pred -------------hhccCCceecCCCC-------CCHH-HHHHHHHHHHHhCCCcEEEEeCC-CCCcccHHHHHHHHHHH
Q 008282 234 -------------GEQVGVPVYTAGTE-------VKPS-QIAKQGLEEAKKKNVDVVIVDTA-GRLQIDKAMMDELKDVK 291 (571)
Q Consensus 234 -------------~~~~gv~v~~~~~~-------~~p~-~v~~~~l~~~~~~~~DvIIIDTp-G~l~~d~~l~~eL~~i~ 291 (571)
.+.-++.+...+.. ..|. .+++..++++..+.+|+|||||- |.-|.......
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~------ 154 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIE------ 154 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccccc------
Confidence 00011112111110 2333 35688889988778999999994 44443322221
Q ss_pred hhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe--eEEEEccCCCCCChhHHHHHHHHhCCCeE-EEecCCC
Q 008282 292 RVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI--TGAILTKLDGDSRGGAALSVKEVSGKPIK-LVGRGER 360 (571)
Q Consensus 292 ~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i--~GVIlNKlD~~~~~g~~lsi~~~~g~PI~-fig~Ge~ 360 (571)
..|-+++|+|++.. -...+.++.+...+++ .++|+||+|.. ...+.......+.+|. ++++.+.
T Consensus 155 ---~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 155 ---GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred ---CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeEEEEccCCHH
Confidence 24788999998643 2333444445555554 67999999976 4445556667777773 3333333
No 57
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.45 E-value=7.3e-13 Score=129.07 Aligned_cols=172 Identities=24% Similarity=0.362 Sum_probs=104.8
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC-c----------------------hhHHHH-HHHhhhccC
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-R----------------------PAAIDQ-LVILGEQVG 238 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~-R----------------------p~a~dq-L~~~~~~~g 238 (571)
++|+++ |++||||||++++|+..|+++|+||++||+|+- | .....| |...-...+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n 82 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN 82 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence 466666 999999999999999999999999999999962 1 011112 111111223
Q ss_pred CceecCCC-----CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC--cchHHH
Q 008282 239 VPVYTAGT-----EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEA 311 (571)
Q Consensus 239 v~v~~~~~-----~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda--~~gq~a 311 (571)
+.++++.. ..+|. -....+++++..+|||||||+|.++.... . ..+...|++++|..+ .+-.++
T Consensus 83 L~lLPAsQtrdKdalt~E-~v~~vv~eL~~~~fDyIi~DsPAGIE~G~--~------~A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 83 LFLLPASQTRDKDALTPE-GVKKVVNELKAMDFDYIIIDSPAGIEQGF--K------NAVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred eEecccccccCcccCCHH-HHHHHHHHHHhcCCCEEEecCcchHHHHH--H------hhhhccceEEEEcCCCccccccc
Confidence 33443322 23333 33566777776899999999998874211 1 122345888888876 222343
Q ss_pred HHHH---HHhh--hhcCe---eEEEEccCCCC-CChhHHHH---HHHHhCCCeEEEecCCCCCCCcc
Q 008282 312 AALV---TTFN--IEIGI---TGAILTKLDGD-SRGGAALS---VKEVSGKPIKLVGRGERMEDLEP 366 (571)
Q Consensus 312 ~~~~---~~f~--~~~~i---~GVIlNKlD~~-~~~g~~ls---i~~~~g~PI~fig~Ge~v~dl~~ 366 (571)
-+++ .... ...+- ..+|+|+++.. ...|..++ +.+.+.+|+ +|..+..+++..
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~l--iGiiPed~~Vi~ 218 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPL--IGVIPEDQDVLR 218 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCce--EEeecCchhhhe
Confidence 3332 2211 12222 67999999954 34555555 556677787 777666555443
No 58
>PRK11519 tyrosine kinase; Provisional
Probab=99.44 E-value=3.6e-12 Score=147.25 Aligned_cols=148 Identities=24% Similarity=0.334 Sum_probs=99.9
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH---------------------HhhhccC
Q 008282 181 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------------------ILGEQVG 238 (571)
Q Consensus 181 ~~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~---------------------~~~~~~g 238 (571)
.++++|+|++. +|+||||++.+||..|+..|+||++||+|+.+|.....+. ......+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 45689999985 9999999999999999999999999999998875432211 0111235
Q ss_pred CceecCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC-cch-HH
Q 008282 239 VPVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA-MTG-QE 310 (571)
Q Consensus 239 v~v~~~~~-~~~p~~v-----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda-~~g-q~ 310 (571)
+.+++.+. ..+|.+. +...++.++ ..||+|||||||.+...+.. .+... .|.+++|+.+ .+. ..
T Consensus 604 l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~-----~l~~~--~d~~l~Vvr~~~t~~~~ 675 (719)
T PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-----IVGRH--VGTTLMVARYAVNTLKE 675 (719)
T ss_pred EEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHH-----HHHHH--CCeEEEEEeCCCCCHHH
Confidence 55665543 2345543 356666665 78999999999988642222 12222 4788999886 333 33
Q ss_pred HHHHHHHhhh-hcCeeEEEEccCCCCC
Q 008282 311 AAALVTTFNI-EIGITGAILTKLDGDS 336 (571)
Q Consensus 311 a~~~~~~f~~-~~~i~GVIlNKlD~~~ 336 (571)
+...+..+.. ..++.|+|+|+++...
T Consensus 676 ~~~~~~~l~~~~~~~~G~VlN~v~~~~ 702 (719)
T PRK11519 676 VETSLSRFEQNGIPVKGVILNSIFRRA 702 (719)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCccCc
Confidence 3333344432 5778999999997543
No 59
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.43 E-value=1.3e-12 Score=132.86 Aligned_cols=162 Identities=18% Similarity=0.153 Sum_probs=90.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-----------HHHHHh----------hhccCCcee
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----------DQLVIL----------GEQVGVPVY 242 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-----------dqL~~~----------~~~~gv~v~ 242 (571)
++|+++|+|||||||++++||..|+++| +|++||+|++..... +-+... ....++.++
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 81 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGILCV 81 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeEEE
Confidence 5788889999999999999999999999 999999998753221 111100 001133343
Q ss_pred cCCCCC------CHHH----HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc-h-HH
Q 008282 243 TAGTEV------KPSQ----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-G-QE 310 (571)
Q Consensus 243 ~~~~~~------~p~~----v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-g-q~ 310 (571)
+.+... .... -+.+.+..+ +++||||||||+|.+.... +...+. ....|.+++++.+.. . ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~-~~~~~~----~~aaD~vlip~~p~~~si~~ 155 (264)
T PRK13231 82 ESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGG-FSVPLR----EDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred EcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEcc-cccccc----ccccceeEEEecCchhHHHH
Confidence 332110 1110 112344444 3689999999988653211 100000 012477888877632 2 22
Q ss_pred HHHHHHHhhh-hcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 311 AAALVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 311 a~~~~~~f~~-~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
+....+.... ...+.++|.|..+.......+..+.+.++.++
T Consensus 156 ~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v 198 (264)
T PRK13231 156 ANNIARGIKKLKGKLGGIICNCRGIDNEVEIVSEFASRIGSRI 198 (264)
T ss_pred HHHHHHHHHHcCCcceEEEEcCCCCccHHHHHHHHHHHhCCCe
Confidence 2222222211 12356888888775443444555666777776
No 60
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.41 E-value=5.1e-12 Score=119.83 Aligned_cols=139 Identities=22% Similarity=0.363 Sum_probs=84.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~ 265 (571)
.++.+++|+||||++.+||.+|+++|++|++||+|++.+.....+ +..... .....++ + .+
T Consensus 3 ~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~-------~~~~~~---~~~~~~~----~-----~~ 63 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLIL-------GLENRV---VYTLHDV----L-----AG 63 (179)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhc-------cccccC---Ccchhhc----c-----cC
Confidence 444578999999999999999999999999999999865432111 111000 0111111 1 11
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhh-hcCeeEEEEccCCCCCCh-h-H
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI-EIGITGAILTKLDGDSRG-G-A 340 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~-~~~i~GVIlNKlD~~~~~-g-~ 340 (571)
|+|||||||.... ..... + ...|.+++|+++... ..+...+..... .....++|+|+++..... . .
T Consensus 64 -d~viiD~p~~~~~--~~~~~---l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 134 (179)
T cd02036 64 -DYILIDSPAGIER--GFITA---I---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDM 134 (179)
T ss_pred -CEEEEECCCCCcH--HHHHH---H---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhH
Confidence 9999999998653 11111 1 124788888877432 333333333222 345678999999976432 2 2
Q ss_pred HHHHHHHhCCCe
Q 008282 341 ALSVKEVSGKPI 352 (571)
Q Consensus 341 ~lsi~~~~g~PI 352 (571)
...+.+.++.|+
T Consensus 135 ~~~~~~~~~~~v 146 (179)
T cd02036 135 VEDIEEILGVPL 146 (179)
T ss_pred HHHHHHHhCCCE
Confidence 344556678876
No 61
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.4e-12 Score=129.41 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=104.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHh--------------hhccCCceecCCCC-
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL--------------GEQVGVPVYTAGTE- 247 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~--------------~~~~gv~v~~~~~~- 247 (571)
..|+++.|++||||||++.+||..|+..|++|.++|+|.+.|..-.-+... ....++.+++.+.-
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl 127 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLL 127 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeec
Confidence 345556699999999999999999999999999999999987642111100 01112222222111
Q ss_pred ---------CC--HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCC-ceEEEEEeC--cchHHHHH
Q 008282 248 ---------VK--PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP-TEVLLVVDA--MTGQEAAA 313 (571)
Q Consensus 248 ---------~~--p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~p-d~vlLVvda--~~gq~a~~ 313 (571)
.. ...++++++....|.+.||+||||||.... +.+. +...+.. +.+++|.-. .+-+++.+
T Consensus 128 ~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsD--ehls----~~~~~~~~~gAviVTTPQ~vAl~Dv~K 201 (300)
T KOG3022|consen 128 KPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSD--EHLS----LVQFLRESDGAVIVTTPQEVALQDVRK 201 (300)
T ss_pred CCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCCh--hhhh----eeecccccCceEEEeCchhhhhHHHHh
Confidence 11 124567888888899999999999998752 1111 1122222 556666433 22244444
Q ss_pred HHHHhhh-hcCeeEEEEccCCCC-------C---ChhHHHHHHHHhCCCeEEEecC
Q 008282 314 LVTTFNI-EIGITGAILTKLDGD-------S---RGGAALSVKEVSGKPIKLVGRG 358 (571)
Q Consensus 314 ~~~~f~~-~~~i~GVIlNKlD~~-------~---~~g~~lsi~~~~g~PI~fig~G 358 (571)
.+..+.. .++|.|+|-|+.--. . ..|....+++.+|+|. +|..
T Consensus 202 ~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~--Lg~i 255 (300)
T KOG3022|consen 202 EIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPL--LGSL 255 (300)
T ss_pred hhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCe--Eeec
Confidence 4443333 678899999976421 1 1255677889999988 5543
No 62
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.41 E-value=1.1e-11 Score=124.78 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=95.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH--------------HHHH---------HH-hhhccC
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--------------IDQL---------VI-LGEQVG 238 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a--------------~dqL---------~~-~~~~~g 238 (571)
++|+|+ ++|||||||++.+||.+|+++|++|++||+|++.+.. .+.+ .. .....+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 577776 6699999999999999999999999999999863210 1110 00 001224
Q ss_pred CceecCCCCCC----HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHH
Q 008282 239 VPVYTAGTEVK----PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 312 (571)
Q Consensus 239 v~v~~~~~~~~----p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~ 312 (571)
+.+++.....+ ..+.+.+.++.+. +.||+|||||||.... .....+ ...|.+++|+.+... ..+.
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~--~~~~~l------~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIES--GFRNAV------APADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCH--HHHHHH------HhCCeEEEEcCCCcHHHHHHH
Confidence 55554432211 1123456677665 6899999999998742 222111 224778888877432 2333
Q ss_pred HHHHHhhh-hcCeeEEEEccCCCCCCh-h---HHHHHHHHhCCCe
Q 008282 313 ALVTTFNI-EIGITGAILTKLDGDSRG-G---AALSVKEVSGKPI 352 (571)
Q Consensus 313 ~~~~~f~~-~~~i~GVIlNKlD~~~~~-g---~~lsi~~~~g~PI 352 (571)
.....+.. .....++|+|+++..... . .+..+.+.++.|+
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPL 197 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHhCCce
Confidence 33332221 123468999999854211 1 2344566677776
No 63
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.41 E-value=1e-11 Score=133.52 Aligned_cols=44 Identities=32% Similarity=0.354 Sum_probs=38.9
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.+.+||+|+ .+|||||||++.+||.+|+..|+||++||+|++..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 345788887 66999999999999999999999999999999753
No 64
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.41 E-value=3.8e-12 Score=137.71 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=93.1
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHH-------------HHH---Hh-----------
Q 008282 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID-------------QLV---IL----------- 233 (571)
Q Consensus 182 ~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~d-------------qL~---~~----------- 233 (571)
+.+||+|+ .+|||||||++.+||.+|+.+|+||++||+|++...... .+. .+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i 199 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVI 199 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHhe
Confidence 34788887 679999999999999999999999999999998532210 000 00
Q ss_pred --hhccCCceecCCCCCCH-------------------HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHh
Q 008282 234 --GEQVGVPVYTAGTEVKP-------------------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (571)
Q Consensus 234 --~~~~gv~v~~~~~~~~p-------------------~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~ 292 (571)
....|+.+++....... ...++++++.+. ++||||||||||.+.. .....
T Consensus 200 ~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~--~t~~a------ 270 (405)
T PRK13869 200 RPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGF--LTLSG------ 270 (405)
T ss_pred eccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhH--HHHHH------
Confidence 00123444443211100 013456666664 6899999999998742 11111
Q ss_pred hhCCceEEEEEeCcch-----HHHHH-------HHHHhhhh--cCeeEEEEccCCCCCCh--hHHHHHHHHhCCCe
Q 008282 293 VLNPTEVLLVVDAMTG-----QEAAA-------LVTTFNIE--IGITGAILTKLDGDSRG--GAALSVKEVSGKPI 352 (571)
Q Consensus 293 ~~~pd~vlLVvda~~g-----q~a~~-------~~~~f~~~--~~i~GVIlNKlD~~~~~--g~~lsi~~~~g~PI 352 (571)
....|.+++++.+..- ..... .+...+.. +.+.+|++|++|..... .....+...++-++
T Consensus 271 l~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~~~~~~~~l~~~~~~~v 346 (405)
T PRK13869 271 LCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVAALLRNMFEDHV 346 (405)
T ss_pred HHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcHHHHHHHHHHHHhhhhh
Confidence 1224677777665321 11211 11122222 34568999999975432 23333555565444
No 65
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.41 E-value=3.8e-12 Score=147.86 Aligned_cols=149 Identities=20% Similarity=0.232 Sum_probs=97.1
Q ss_pred CCCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------------------hhhccC
Q 008282 181 SRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------------------LGEQVG 238 (571)
Q Consensus 181 ~~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------------------~~~~~g 238 (571)
.++++|+|++. +|+||||++++||..|++.|++|+|||+|+++|.....+.. .....+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 45788999855 99999999999999999999999999999998754332210 011234
Q ss_pred CceecCCCC-CCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-ch-HH
Q 008282 239 VPVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QE 310 (571)
Q Consensus 239 v~v~~~~~~-~~p~~v-----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-~g-q~ 310 (571)
+.+++.+.. ..|.+. +.+.++.++ +.||+|||||||.+..... ..+.. ..|.+++|+.+. +. ..
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~-----~~l~~--~~D~vl~v~~~~~~~~~~ 695 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDM-----RAAAR--LAIIMLLVTAYDRVVVEC 695 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHH-----HHhhh--hCCeEEEEEEeCceeHHH
Confidence 556655432 233332 355667665 7899999999998753111 11111 147888888762 22 33
Q ss_pred HHHHHHHhh-hhcCeeEEEEccCCCCCC
Q 008282 311 AAALVTTFN-IEIGITGAILTKLDGDSR 337 (571)
Q Consensus 311 a~~~~~~f~-~~~~i~GVIlNKlD~~~~ 337 (571)
..+.+..+. .+..+.|||+|++|....
T Consensus 696 ~~~~~~~l~~~~~~~~GvvlN~~~~~~~ 723 (754)
T TIGR01005 696 GRADAQGISRLNGEVTGVFLNMLDPNDE 723 (754)
T ss_pred HHHHHHHHHhcCCceEEEEecCCChhhh
Confidence 333333332 135678999999996543
No 66
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.40 E-value=4.3e-11 Score=125.87 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=96.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch---hHH--H--HHHHhhhccCCceecCCC---CCCH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AAI--D--QLVILGEQVGVPVYTAGT---EVKP 250 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp---~a~--d--qL~~~~~~~gv~v~~~~~---~~~p 250 (571)
+++.+|.|+|++|+||||++..|+..|..+|++|.+++.|+..+ +++ | .+..++...++.+..... -...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 45789999999999999999999999999999999999998654 221 1 122223333333333221 1224
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEc
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlN 330 (571)
...+.+++..+...+||+|||||+|..+.... +.. ..|-+++|++...+.+.........+-. +-+|+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-------i~~--~aD~vlvv~~p~~gd~iq~~k~gi~E~a--DIiVVN 202 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA-------VAG--MVDFFLLLQLPGAGDELQGIKKGIMELA--DLIVIN 202 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH-------HHH--hCCEEEEEecCCchHHHHHHHhhhhhhh--heEEee
Confidence 56677788887778999999999999853222 111 1467777777666655433222111111 359999
Q ss_pred cCCCCCCh
Q 008282 331 KLDGDSRG 338 (571)
Q Consensus 331 KlD~~~~~ 338 (571)
|.|.....
T Consensus 203 KaDl~~~~ 210 (332)
T PRK09435 203 KADGDNKT 210 (332)
T ss_pred hhcccchh
Confidence 99966443
No 67
>PRK10037 cell division protein; Provisional
Probab=99.40 E-value=6.6e-12 Score=126.99 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=81.9
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-------------HHHHH--------hhhccCCcee
Q 008282 185 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVI--------LGEQVGVPVY 242 (571)
Q Consensus 185 VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-------------dqL~~--------~~~~~gv~v~ 242 (571)
||+++ .+|||||||++.+||..|+++|+||++||+|++..... +.+.. +....|+.++
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii 82 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDLL 82 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEEE
Confidence 56666 67999999999999999999999999999999753211 00000 0001244555
Q ss_pred cCCCCCCHH------------HHHHHHHHHHHh-CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH
Q 008282 243 TAGTEVKPS------------QIAKQGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ 309 (571)
Q Consensus 243 ~~~~~~~p~------------~v~~~~l~~~~~-~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq 309 (571)
+.+ ..... ..+.+.+..+.. ++||||||||||.... .... . ....|.+++++.+..-
T Consensus 83 p~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~--~~~~----a--l~aaD~vlvpv~~~~~- 152 (250)
T PRK10037 83 PFG-QLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASP--LTRQ----L--LSLCDHSLAIVNVDAN- 152 (250)
T ss_pred cCC-CCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccH--HHHH----H--HHhCCEEEEEcCcCHH-
Confidence 443 11111 123455555531 5799999999998742 1111 1 1224788888876422
Q ss_pred HHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 310 EAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 310 ~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
...+....+. ..+ ..+++|+++...
T Consensus 153 ~~i~~~~~~~-~~~-~~i~~n~~~~~~ 177 (250)
T PRK10037 153 CHIRLHQQAL-PAG-AHILINDLRIGS 177 (250)
T ss_pred HHHhhhcccc-CCC-eEEEEecCCccc
Confidence 2222222211 112 357889987443
No 68
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.40 E-value=5.3e-12 Score=135.72 Aligned_cols=162 Identities=20% Similarity=0.307 Sum_probs=93.2
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCchhHH-------------HHHH-Hh-h---------
Q 008282 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAI-------------DQLV-IL-G--------- 234 (571)
Q Consensus 181 ~~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~Rp~a~-------------dqL~-~~-~--------- 234 (571)
.+++||+|+ .+|||||||++++||.+|+.+|+||++||+ |++..... +.+. .+ .
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i 183 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAI 183 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhhe
Confidence 456788887 669999999999999999999999999996 98653210 0000 00 0
Q ss_pred ---hccCCceecCCCCC------------------CHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhh
Q 008282 235 ---EQVGVPVYTAGTEV------------------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 293 (571)
Q Consensus 235 ---~~~gv~v~~~~~~~------------------~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~ 293 (571)
...|+.+++..... .+...++.+++.+. ++||||||||||.+.. .....+
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~--lt~nAL------ 254 (387)
T PHA02519 184 KPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGT--GTINVV------ 254 (387)
T ss_pred ecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccH--HHHHHH------
Confidence 01244444432110 12234566777664 7899999999998852 222222
Q ss_pred hCCceEEEEEeCcch-----HHHHHHH----HHhhh---hcCeeEEEEccCCCCC-Ch-h-HHHHHHHHhCCCe
Q 008282 294 LNPTEVLLVVDAMTG-----QEAAALV----TTFNI---EIGITGAILTKLDGDS-RG-G-AALSVKEVSGKPI 352 (571)
Q Consensus 294 ~~pd~vlLVvda~~g-----q~a~~~~----~~f~~---~~~i~GVIlNKlD~~~-~~-g-~~lsi~~~~g~PI 352 (571)
...|.+++.+.+..- ......+ ..+.. ...+ .+++|++|... .. . ....+.+.+|-.+
T Consensus 255 ~AAd~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l-~il~t~~~~~~~~~~~~i~~~l~~~~g~~v 327 (387)
T PHA02519 255 CAADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVV-RLLLTKYSLTVGNQSRWMEEQIRNTWGSMV 327 (387)
T ss_pred HHhCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCe-EEEEeeECCCCchHHHHHHHHHHHHhcccc
Confidence 223666666655211 1111222 11111 1122 38999999763 22 2 2344666777555
No 69
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.39 E-value=1e-11 Score=126.54 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=95.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHH--------------HH--------Hh-h-hccC
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ--------------LV--------IL-G-EQVG 238 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dq--------------L~--------~~-~-~~~g 238 (571)
++|+|+ ++|||||||++++||..|+++|++|++||+|++.+..... +. .+ . ...+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 577776 6799999999999999999999999999999964321100 00 00 0 1234
Q ss_pred CceecCCCCCCH----HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHH
Q 008282 239 VPVYTAGTEVKP----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 312 (571)
Q Consensus 239 v~v~~~~~~~~p----~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~ 312 (571)
+.+++.+...+. .....+.++.++...||||||||||.+.. .....+ ...|.+++|+++... ..+.
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~--~~~~~l------~~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET--GALMAL------YFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccH--HHHHHH------HhCCeEEEEcCCCchHHHhHH
Confidence 444444322211 11234566666545799999999998752 111111 224888888887432 2222
Q ss_pred HHHHHhh--------hhcCe-eEEEEccCCCCCCh----hHHHHHHHHhCCCe
Q 008282 313 ALVTTFN--------IEIGI-TGAILTKLDGDSRG----GAALSVKEVSGKPI 352 (571)
Q Consensus 313 ~~~~~f~--------~~~~i-~GVIlNKlD~~~~~----g~~lsi~~~~g~PI 352 (571)
.....+. ...++ .++|+|+++..... .....+.+.++.++
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~ 207 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKL 207 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcE
Confidence 2222221 11223 47999999865321 12345666778776
No 70
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.39 E-value=7.3e-13 Score=139.08 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=97.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH---------H------hhh----------
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV---------I------LGE---------- 235 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~---------~------~~~---------- 235 (571)
++.++|+++|++|+||||++++||.+|+++|++|++||+|++++.....+. . ..+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~ 108 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFK 108 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEE
Confidence 457899999999999999999999999999999999999988643211100 0 000
Q ss_pred ccCCceecCCCC---CCH----HHHHHHHHHHH---HhCCCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEE
Q 008282 236 QVGVPVYTAGTE---VKP----SQIAKQGLEEA---KKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLV 302 (571)
Q Consensus 236 ~~gv~v~~~~~~---~~p----~~v~~~~l~~~---~~~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLV 302 (571)
..|+.+...+.. ..+ .....+.++.+ .| +||||||||+|.... ...... .+ .+.+++|
T Consensus 109 ~~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~-------~~-ad~VIVV 179 (329)
T cd02033 109 RDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIAR-------DM-AQKVIVV 179 (329)
T ss_pred eCCEEEecCCCCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhh-------cC-CceEEEe
Confidence 112233222210 001 11122344443 44 799999999886531 111111 11 2566666
Q ss_pred EeCcch--HH---HHHHHHHh---hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecC
Q 008282 303 VDAMTG--QE---AAALVTTF---NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 358 (571)
Q Consensus 303 vda~~g--q~---a~~~~~~f---~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~G 358 (571)
...... .+ +...+..| +..+++.|+|+||.|+. +.+..+++.+++|+ ++..
T Consensus 180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~---~~ie~~ae~lgi~v--Lg~I 238 (329)
T cd02033 180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT---GEAQAFAAHAGIPI--LAAI 238 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc---chHHHHHHHhCCCE--EEEC
Confidence 554221 12 22222223 22466799999999863 23667788889998 5554
No 71
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.39 E-value=4.8e-12 Score=131.49 Aligned_cols=165 Identities=19% Similarity=0.265 Sum_probs=93.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-----------HHHHHHhhh----cc---CCce---e
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVILGE----QV---GVPV---Y 242 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-----------~dqL~~~~~----~~---gv~v---~ 242 (571)
++|+|+|+|||||||++++||..|+++|+||++||+|++.... +.++..... .. ++.+ +
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 4788889999999999999999999999999999999864321 111110000 00 0000 0
Q ss_pred c-CCC--------CCCH-------H-HHHHHHHHHHH--hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEE
Q 008282 243 T-AGT--------EVKP-------S-QIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 303 (571)
Q Consensus 243 ~-~~~--------~~~p-------~-~v~~~~l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVv 303 (571)
. ... ...+ . ...+..++.+. .++||||||||+|..... .....+. . ...+.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~-g~~~~~a-~---~~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCG-GFATPLA-R---SLAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCcccc-ccccchh-h---hhCCeEEEEe
Confidence 0 000 0010 0 01134444432 147999999998754110 0000000 0 1247778887
Q ss_pred eCc-ch----HHHHHHHHHhhh---hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecC
Q 008282 304 DAM-TG----QEAAALVTTFNI---EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRG 358 (571)
Q Consensus 304 da~-~g----q~a~~~~~~f~~---~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~G 358 (571)
++. .. .++...+..+.. .+++.|+|+|+.+.. +....+++.++.|+ ++..
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~---~~~~~~~~~~~i~v--Lg~I 213 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS---GEAQAFAREVGIPV--LAAI 213 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc---cHHHHHHHHcCCCe--EEEC
Confidence 752 11 233333333432 366899999999863 24466778889988 5543
No 72
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.37 E-value=9.7e-12 Score=133.80 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=92.6
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCchhHHH-------------HHH-H-hh---------
Q 008282 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAID-------------QLV-I-LG--------- 234 (571)
Q Consensus 181 ~~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~Rp~a~d-------------qL~-~-~~--------- 234 (571)
.+++||+|+ .+|||||||++.+||.+|+.+|+||++||+ |++...... .+. . .+
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i 183 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAI 183 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhhe
Confidence 356788887 669999999999999999999999999996 987532210 000 0 00
Q ss_pred ---hccCCceecCCCC------------------CCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhh
Q 008282 235 ---EQVGVPVYTAGTE------------------VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 293 (571)
Q Consensus 235 ---~~~gv~v~~~~~~------------------~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~ 293 (571)
...|+.+++.... .++..+++.+++.+. ++||||||||||.+.. .....+
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~--~t~nal------ 254 (388)
T PRK13705 184 KPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGI--GTINVV------ 254 (388)
T ss_pred ecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhH--HHHHHH------
Confidence 0123444443211 112344556666664 6899999999998742 111111
Q ss_pred hCCceEEEEEeCcc----h-HHHHHHHHHhhhh-------cCeeEEEEccCCCCCC--hhHH-HHHHHHhCCCe
Q 008282 294 LNPTEVLLVVDAMT----G-QEAAALVTTFNIE-------IGITGAILTKLDGDSR--GGAA-LSVKEVSGKPI 352 (571)
Q Consensus 294 ~~pd~vlLVvda~~----g-q~a~~~~~~f~~~-------~~i~GVIlNKlD~~~~--~g~~-lsi~~~~g~PI 352 (571)
...|.+++++.+.. + ....+.+..+... .. ..+++|++|.... ...+ ..+.+.++-.+
T Consensus 255 ~AaD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~-l~il~t~~~~~~~~~~~~~~~~l~~~~~~~v 327 (388)
T PRK13705 255 CAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPD-VRILLTKYSNSNGSQSPWMEEQIRDAWGSMV 327 (388)
T ss_pred HHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCC-eEEEEEEecCCCchHHHHHHHHHHHHhcccc
Confidence 12366677666531 1 1122222222211 12 2389999997642 2223 34555666544
No 73
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.37 E-value=1.3e-11 Score=128.41 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=93.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHH-------HHHhhhccCCceecCCCC---CCH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGTE---VKP 250 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dq-------L~~~~~~~gv~v~~~~~~---~~p 250 (571)
.++.+|.|+|++|+||||++.+|+..+.++|++|.++++|++.+..... +.......++.+...... ...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 3578999999999999999999999999999999999999887642111 111122234433333221 122
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEc
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlN 330 (571)
.....++++.+...+||+|||||+|..+..... ... .|.+++|.....+.+.......+.. .. .-+|+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i-------~~~--aD~i~vv~~~~~~~el~~~~~~l~~-~~-~ivv~N 180 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEVDI-------ANM--ADTFVVVTIPGTGDDLQGIKAGLME-IA-DIYVVN 180 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH-------HHh--hceEEEEecCCccHHHHHHHHHHhh-hc-cEEEEE
Confidence 334456666666679999999999976533221 111 2555666556666554444333322 11 358999
Q ss_pred cCCCCCC
Q 008282 331 KLDGDSR 337 (571)
Q Consensus 331 KlD~~~~ 337 (571)
|+|....
T Consensus 181 K~Dl~~~ 187 (300)
T TIGR00750 181 KADGEGA 187 (300)
T ss_pred cccccch
Confidence 9996543
No 74
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.37 E-value=8.4e-12 Score=126.89 Aligned_cols=40 Identities=45% Similarity=0.574 Sum_probs=37.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++++++|++|+||||++++||.+++++|++|++||+|+.+
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 3789999999999999999999999999999999999853
No 75
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.36 E-value=1.4e-11 Score=122.27 Aligned_cols=146 Identities=24% Similarity=0.273 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch-------hHHHHHH---------Hhhhcc-----------
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-------AAIDQLV---------ILGEQV----------- 237 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp-------~a~dqL~---------~~~~~~----------- 237 (571)
+++++|++|+||||++++||.++++.|++|++|++|+.++ +..+-+. .+....
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4788899999999999999999999999999999999883 2111110 010000
Q ss_pred --CCceec-CCCCCCHHHHH--HHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhC--CceEEEEEeCc--ch
Q 008282 238 --GVPVYT-AGTEVKPSQIA--KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN--PTEVLLVVDAM--TG 308 (571)
Q Consensus 238 --gv~v~~-~~~~~~p~~v~--~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~--pd~vlLVvda~--~g 308 (571)
+..+.. .....++.+.+ .+.++.+...+||+||||||+..+....+ .+....+ .+.+++|+.+. .-
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l-----~~~~l~~~~~~~vllV~~p~~~s~ 155 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL-----VRELLTDPERTSFRLVTLPEKLPL 155 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH-----HHHHccCCCceEEEEEeCCCccHH
Confidence 111111 11223444433 34555555334999999999974321111 1111222 26788888773 22
Q ss_pred HHHHHHHHHhhh-hcCeeEEEEccCCCC
Q 008282 309 QEAAALVTTFNI-EIGITGAILTKLDGD 335 (571)
Q Consensus 309 q~a~~~~~~f~~-~~~i~GVIlNKlD~~ 335 (571)
.++...+..+.. ..++.|+|+|++...
T Consensus 156 ~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 156 YETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 444444444332 356689999998744
No 76
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.34 E-value=3.9e-11 Score=121.62 Aligned_cols=42 Identities=36% Similarity=0.441 Sum_probs=36.3
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCch
Q 008282 183 PTVILLA-GLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRP 224 (571)
Q Consensus 183 ~~VI~iv-G~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp 224 (571)
+.+|.|+ -+|||||||++.+||.+|+ ..|+||++||+|++..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 4677777 5599999999999999999 5569999999999853
No 77
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.33 E-value=2.8e-11 Score=123.31 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH---H--H--HHHHhhhccCCceecCCCCCC---H
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I--D--QLVILGEQVGVPVYTAGTEVK---P 250 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a---~--d--qL~~~~~~~gv~v~~~~~~~~---p 250 (571)
+.+.+|.|+|.||+||||++-+|...|.++|++|.++..||-.|-. + | .+..+....|+.+.+..+... .
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 4577999999999999999999999999999999999999876532 1 1 223344456777766554322 2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEc
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlN 330 (571)
....++++.-+..-+||+|||+|.|..+.+.+... . .|-+++|+-+..|.+...+-.-..+-. +-+++|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~-------~--aDt~~~v~~pg~GD~~Q~iK~GimEia--Di~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN-------M--ADTFLVVMIPGAGDDLQGIKAGIMEIA--DIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhh-------h--cceEEEEecCCCCcHHHHHHhhhhhhh--heeeEe
Confidence 33446677777778999999999999875443321 1 256666666666654433222121111 458999
Q ss_pred cCCC
Q 008282 331 KLDG 334 (571)
Q Consensus 331 KlD~ 334 (571)
|.|.
T Consensus 198 KaD~ 201 (323)
T COG1703 198 KADR 201 (323)
T ss_pred ccCh
Confidence 9993
No 78
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.33 E-value=1.6e-11 Score=115.00 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHH-------HHhhhccCCceecCCCC---CCHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL-------VILGEQVGVPVYTAGTE---VKPSQIA 254 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL-------~~~~~~~gv~v~~~~~~---~~p~~v~ 254 (571)
++.++|++|+||||++.+|+..+.++|.+|+++++|+..+....++ .......++.+...... ..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 3788899999999999999999999999999999998654321111 01111122222222111 1223334
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHH--HhhhhcCeeEEEEccC
Q 008282 255 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT--TFNIEIGITGAILTKL 332 (571)
Q Consensus 255 ~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~--~f~~~~~i~GVIlNKl 332 (571)
.+.++.++..+||+|||||||..+.. . .+.. ..|.+++|+.+..+ ++....+ .|. . -+-+++||+
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~---~----~~~~--~Ad~~ivv~tpe~~-D~y~~~k~~~~~-~--~~~~~~~k~ 147 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSE---V----DIAS--MADTTVVVMAPGAG-DDIQAIKAGIME-I--ADIVVVNKA 147 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhh---h----hHHH--hCCEEEEEECCCch-hHHHHhhhhHhh-h--cCEEEEeCC
Confidence 45566665568999999998875421 1 1111 23777777766533 3333332 222 1 245899998
Q ss_pred C
Q 008282 333 D 333 (571)
Q Consensus 333 D 333 (571)
|
T Consensus 148 ~ 148 (148)
T cd03114 148 D 148 (148)
T ss_pred C
Confidence 7
No 79
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.32 E-value=4.9e-11 Score=130.86 Aligned_cols=182 Identities=26% Similarity=0.345 Sum_probs=117.2
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.++|+|. +||||||+++.|+.+|+++|++|..+.+.+.. ++.. .+....|.+....+......+.+++.+..+.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~---~d~~-~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~- 79 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDY---IDPA-YHTAATGRPSRNLDSWMMGEELVRALFARAA- 79 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCc---ccHH-HHHHHhCCCcccCCceeCCHHHHHHHHHHhc-
Confidence 4777876 99999999999999999999999988775432 2211 1222345554443332222345566666654
Q ss_pred CCCcEEEEeCCCCCccc------HHHHHHHHHHHhhhCCceEEEEEeCcc-hHHHHHHH---HHhhhhcCeeEEEEccCC
Q 008282 264 KNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLD 333 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d------~~l~~eL~~i~~~~~pd~vlLVvda~~-gq~a~~~~---~~f~~~~~i~GVIlNKlD 333 (571)
.++|++||+++|.+... .... .++.+.++ .+++||+|+.. +......+ ..+...+.+.|+|+|++.
T Consensus 80 ~~~D~vlVEGagGl~~g~~~~~~~~s~---adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v~ 155 (451)
T PRK01077 80 QGADIAVIEGVMGLFDGAGSDPDEGST---ADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRVG 155 (451)
T ss_pred ccCCEEEEECCCccccCCccCCCCCCH---HHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECCC
Confidence 68999999999877531 1222 23444444 68999999854 22222332 345557889999999997
Q ss_pred CCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHH
Q 008282 334 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 383 (571)
Q Consensus 334 ~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~ 383 (571)
.......+....+.+++|+ +|..+..+++.. | +|+||.-...
T Consensus 156 ~~~~~~~l~~~l~~~gipv--LG~IP~~~~l~~--p----~r~lgl~~~~ 197 (451)
T PRK01077 156 SERHYQLLREALERCGIPV--LGALPRDAALAL--P----ERHLGLVQAS 197 (451)
T ss_pred ChhHHHHHHHHHHhcCCCE--EEEeeCCcccCC--C----ccccCCCCcc
Confidence 6544444455555678887 777777666543 3 7788865433
No 80
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.32 E-value=3.8e-12 Score=127.98 Aligned_cols=140 Identities=24% Similarity=0.307 Sum_probs=87.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-----H--HHHHhhhccCCceecCCCCCCHHH-
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----D--QLVILGEQVGVPVYTAGTEVKPSQ- 252 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-----d--qL~~~~~~~gv~v~~~~~~~~p~~- 252 (571)
++..+|.|+|+||+||||++..|+..|.++|++|++++.||-.|-.- | .+..+....|+.+.+..+......
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 34679999999999999999999999999999999999998765321 1 122345556777766654443333
Q ss_pred --HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhhcCeeEE
Q 008282 253 --IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIEIGITGA 327 (571)
Q Consensus 253 --v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~~~i~GV 327 (571)
...+++.-+..-+||+|||+|.|..+.+.+ +... .|-+++|+.+..|.+.. .-+..+. +-+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-------I~~~--aD~~v~v~~Pg~GD~iQ~~KaGimEia-----Di~ 172 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD-------IADM--ADTVVLVLVPGLGDEIQAIKAGIMEIA-----DIF 172 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-------HHTT--SSEEEEEEESSTCCCCCTB-TTHHHH------SEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-------HHHh--cCeEEEEecCCCccHHHHHhhhhhhhc-----cEE
Confidence 345667777778999999999998873222 2222 37778888776663321 1111111 569
Q ss_pred EEccCCC
Q 008282 328 ILTKLDG 334 (571)
Q Consensus 328 IlNKlD~ 334 (571)
|+||.|.
T Consensus 173 vVNKaD~ 179 (266)
T PF03308_consen 173 VVNKADR 179 (266)
T ss_dssp EEE--SH
T ss_pred EEeCCCh
Confidence 9999993
No 81
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.31 E-value=1e-10 Score=122.76 Aligned_cols=161 Identities=24% Similarity=0.268 Sum_probs=96.3
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-------------HHHHH-------------hh
Q 008282 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVI-------------LG 234 (571)
Q Consensus 182 ~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-------------dqL~~-------------~~ 234 (571)
..++|+|+ ++||+||||++++||.+++++|++|++||+|++..... ..+.. ..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 45788888 56999999999999999999999999999998765321 01100 00
Q ss_pred hccCCceecCCCCC---CHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--H
Q 008282 235 EQVGVPVYTAGTEV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 309 (571)
Q Consensus 235 ~~~gv~v~~~~~~~---~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q 309 (571)
...|+.++..+... -....++..++.+. +.|||||||||+.... ... .+.. ..|.+++|+++... .
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~--~~~----~~L~--~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTP--AAE----TALE--SADLVLVVVPADVRAVA 242 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCH--HHH----HHHH--HCCEEEEEcCCcHHHHH
Confidence 11244444433211 11344566777665 7899999999998742 111 1111 24788888877432 3
Q ss_pred HHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 310 EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 310 ~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
.+.+..+.+...-.-..+|+|+..... -....+.+.++.|+.
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~~~~~--~~~~~i~~~lg~~v~ 284 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGPAPAG--LDPEEIAESLGLPLL 284 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCC--CCHHHHHHHhCCCce
Confidence 333333333321112356777643221 123557777888873
No 82
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.30 E-value=5.1e-11 Score=121.54 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=97.0
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHH-HHhcCCeEEEEeccCCchh-------------HHHHHH---------HhhhccC
Q 008282 183 PTVILLA-GLQGVGKTTVSAKLANY-LKKQGKSCMLVAGDVYRPA-------------AIDQLV---------ILGEQVG 238 (571)
Q Consensus 183 ~~VI~iv-G~~GvGKTTtaakLA~~-La~~G~kVlLVd~D~~Rp~-------------a~dqL~---------~~~~~~g 238 (571)
.++|+++ |+||+||||+++||+.+ ++.+|++|+++|+|+..+. ..+-+. ......|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 3567776 99999999999999554 5566788899999986322 111111 1222256
Q ss_pred CceecCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC--cchHHH
Q 008282 239 VPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--MTGQEA 311 (571)
Q Consensus 239 v~v~~~~~~~~p~-----~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda--~~gq~a 311 (571)
+.+++.+...... +.....+..+. ..+||||||||+.++.+. +..+ ...+.+++|... ..-.++
T Consensus 82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~-----~~~~---~~sd~~viVt~pe~~si~~A 152 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT-----LSFI---LSSDELVIVTTPEPTSITDA 152 (262)
T ss_pred EEEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH-----HHHH---HhcCcEEEEeCCCcchHHHH
Confidence 6666654332211 12234555554 567999999999986432 1112 223777888765 233555
Q ss_pred HHHHHH-hhhhcCeeE--EEEccCCCCCCh-hHH---HHHHHHhCCCeEEEecCC
Q 008282 312 AALVTT-FNIEIGITG--AILTKLDGDSRG-GAA---LSVKEVSGKPIKLVGRGE 359 (571)
Q Consensus 312 ~~~~~~-f~~~~~i~G--VIlNKlD~~~~~-g~~---lsi~~~~g~PI~fig~Ge 359 (571)
....+. ........+ +|+|+++..... ... ......+- ++.+++..+
T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~-~~~~i~~~~ 206 (262)
T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVP-VLQVIPFDP 206 (262)
T ss_pred HHHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCC-ceeEeccCh
Confidence 544432 222445556 999999844332 222 22223332 566676665
No 83
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.29 E-value=1.3e-10 Score=115.52 Aligned_cols=88 Identities=28% Similarity=0.387 Sum_probs=64.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccC-----CceecCCCCCCHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG-----VPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~g-----v~v~~~~~~~~p~~v~~~~l~ 259 (571)
|.+...+||+||||++..||..|+++|.+|.+||+|+.+|-+.+ ...+...| +.++.. +....+.++++
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W--~~~a~~~~~~~~~~~V~~~----~e~~~l~~~~e 77 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW--AENAQRPGAWPDRIEVYEA----DELTILEDAYE 77 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH--HHhccccCCCCCCeeEEec----cchhhHHHHHH
Confidence 44445789999999999999999999999999999999997633 22232222 233332 22345566777
Q ss_pred HHHhCCCcEEEEeCCCCCc
Q 008282 260 EAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~ 278 (571)
.+....||+|||||.|.-+
T Consensus 78 ~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 78 AAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHhcCCCEEEEeCCCCCc
Confidence 7665679999999999764
No 84
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.26 E-value=1.1e-10 Score=117.38 Aligned_cols=143 Identities=23% Similarity=0.197 Sum_probs=88.8
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc-------------hhHH--------HHHHHhhhccCCce
Q 008282 184 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-------------PAAI--------DQLVILGEQVGVPV 241 (571)
Q Consensus 184 ~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R-------------p~a~--------dqL~~~~~~~gv~v 241 (571)
++|+|+|+ |||||||++++||..|++.|++|++||+|+.- .+-. .+-..+....|+.+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 47888888 99999999999999999999999999999741 1100 01112333457777
Q ss_pred ecCCCCCCHH-----------HHHHHHHHHHH-hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH
Q 008282 242 YTAGTEVKPS-----------QIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ 309 (571)
Q Consensus 242 ~~~~~~~~p~-----------~v~~~~l~~~~-~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq 309 (571)
++.+.-.... ..+.+.+..+. ...+|+||||||+.... .... .... .|.++.|+.+....
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~---~~~~---al~~--aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSP---YTRQ---ALAA--ADLVLVVVNPDAAS 153 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcH---HHHH---HHHh--CCeEEEEeCCCHHH
Confidence 7765322111 12245566665 46799999999997642 1111 1111 37777777764432
Q ss_pred HHHHHH-HHhhhhcCeeEEEEccCCCCCCh
Q 008282 310 EAAALV-TTFNIEIGITGAILTKLDGDSRG 338 (571)
Q Consensus 310 ~a~~~~-~~f~~~~~i~GVIlNKlD~~~~~ 338 (571)
-+ ... ..+.. -..+++|++|..+..
T Consensus 154 ~~-~L~q~~l~~---~~~~liNq~~~~s~l 179 (243)
T PF06564_consen 154 HA-RLHQRALPA---GHRFLINQYDPASQL 179 (243)
T ss_pred HH-HHHHhcccC---CcEEEEeccCccchH
Confidence 11 111 11211 247999999977553
No 85
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.25 E-value=9e-11 Score=108.47 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=72.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCC
Q 008282 187 LLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNV 266 (571)
Q Consensus 187 ~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~ 266 (571)
+..+++|+||||++.+||.+++.+|.+|+++|+|++.+..- |
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~--------------------------------------y 45 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD--------------------------------------Y 45 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC--------------------------------------C
Confidence 34488999999999999999999999999999998654320 8
Q ss_pred cEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhh--hcCeeEEEEccCCCCCCh
Q 008282 267 DVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI--EIGITGAILTKLDGDSRG 338 (571)
Q Consensus 267 DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~--~~~i~GVIlNKlD~~~~~ 338 (571)
|+||||||+..... .. .+.. ..|.+++|+++... .+....++.... .....++|+|+++.....
T Consensus 46 d~VIiD~p~~~~~~--~~----~~l~--~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~ 113 (139)
T cd02038 46 DYIIIDTGAGISDN--VL----DFFL--AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEG 113 (139)
T ss_pred CEEEEECCCCCCHH--HH----HHHH--hCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHH
Confidence 99999999976422 11 1112 23788888887432 233333333322 223467999999865433
No 86
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.25 E-value=1.7e-10 Score=125.26 Aligned_cols=205 Identities=21% Similarity=0.240 Sum_probs=130.1
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
-++|+|. +|+||||+++.|+.+|.++|.+|...-+- |..+|.. .+....|.+....++.....+.++..+. .
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~G---pd~iD~~-~~~~~~g~~~~nld~~~~~~~~i~~~~~---~ 75 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAG---PDFIDPS-HHEAVAGRPSRTLDPWLSGEDGMRRNYY---R 75 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeC---CCCCCHH-HHHHHhCCCcccCChhhCCHHHHHHHHH---h
Confidence 3677877 99999999999999999999999755542 2222322 2344556666655544444444444433 2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHH---HHhhh----hcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALV---TTFNI----EIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~---~~f~~----~~~i~GVIlNKlD~~ 335 (571)
..+|++||+++|.+..... ....++.+.++ .+++||+|+..+ ..+...+ ..|.. .+.|.|||+|++.+.
T Consensus 76 ~~~d~~vIEG~gGl~dg~~--~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~ 152 (433)
T PRK13896 76 GEGDICVVEGVMGLYDGDV--SSTAMVAEALD-LPVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGG 152 (433)
T ss_pred hcCCEEEEECCCccccCCC--CCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcH
Confidence 3589999999999864321 12344555554 689999998655 2333323 34544 688999999999876
Q ss_pred CChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHHHHHcCCCCHHHH
Q 008282 336 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDF 415 (571)
Q Consensus 336 ~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~k~~~g~~~ledl 415 (571)
.+...+....+. ++|+ +|..++.+++.. | +||||.-...+.. ..++. ..+ .+..+|++.+
T Consensus 153 ~h~~~l~~~~~~-~i~v--lG~lP~~~~~~~--~----~RHLGLv~~~e~~-~~~~~---------~~~-~~~~~d~~~l 212 (433)
T PRK13896 153 RHADGIRDALPD-ELTY--FGRIPPRDDLEI--P----DRHLGLHMGSEAP-LDDDA---------LDE-AAEHIDAERL 212 (433)
T ss_pred HHHHHHHHhhhh-cCce--eEecccCCCCCC--C----CCCcCCCcchhhc-cHHHH---------HHH-HHHhCCHHHH
Confidence 655554444444 6777 888888887654 4 8999975433311 11111 111 3446788887
Q ss_pred HHHH
Q 008282 416 LKQT 419 (571)
Q Consensus 416 ~~ql 419 (571)
++..
T Consensus 213 ~~~a 216 (433)
T PRK13896 213 AAVA 216 (433)
T ss_pred HHHh
Confidence 7654
No 87
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.25 E-value=1.7e-10 Score=126.43 Aligned_cols=210 Identities=22% Similarity=0.352 Sum_probs=125.3
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 186 I~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
++|+|. +||||||+++.|+.+|+++|++|...-+= |..+|.. .+....|.+...........+.+++.+..+. .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d~~D~~-~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~~-~ 76 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PDYIDPM-FHTQATGRPSRNLDSFFMSEAQIQECFHRHS-K 76 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CCCCCHH-HHHHHhCCchhhCCcccCCHHHHHHHHHHhc-c
Confidence 677887 99999999999999999999999955431 1112211 1222334443332222223445566666654 6
Q ss_pred CCcEEEEeCCCCCcc------cHHHHHHHHHHHhhhCCceEEEEEeCcc-hHHHHHHH---HHhhhhcCeeEEEEccCCC
Q 008282 265 NVDVVIVDTAGRLQI------DKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALV---TTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~------d~~l~~eL~~i~~~~~pd~vlLVvda~~-gq~a~~~~---~~f~~~~~i~GVIlNKlD~ 334 (571)
++|++||+++|.+.. +..... ++.+.++ .++++|+++.+ ...+..+. ..|...+.+.|+|+|+++.
T Consensus 77 ~~D~viVEGagGl~~g~~p~~~~~s~a---dlAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v~~ 152 (449)
T TIGR00379 77 GTDYSIIEGVRGLYDGISAITDYGSTA---SVAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRVGS 152 (449)
T ss_pred cCCEEEEecCCccccCCCCCCCCccHH---HHHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECCCC
Confidence 899999999987652 112222 3444444 68999999864 23333332 2355578899999999986
Q ss_pred CCChhHHHH-HHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHHHHHcCCCCHH
Q 008282 335 DSRGGAALS-VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFN 413 (571)
Q Consensus 335 ~~~~g~~ls-i~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~k~~~g~~~le 413 (571)
..+...... +...+++|+ +|..+..+++.. | +|+||.-...+.- ...+.+ +......+..++++
T Consensus 153 ~~~~~~~~~~i~~~~gipv--LG~IP~~~~l~~--p----~rhLgLv~~~e~~-~~~~~~------~~~~~~~~~~~d~~ 217 (449)
T TIGR00379 153 ERHLEKLKIAVEPLRGIPI--LGVIPRQQDLKV--P----DRHLGLVPAGERE-IIQQIF------DWLAEVVEKYLDLD 217 (449)
T ss_pred HHHHHHHHHHHHHhCCCCE--EEEecCccccCC--C----CcccCCCChhhhh-hHHHHH------HHHHHHHHhhCCHH
Confidence 544333233 334468887 777776666543 3 7888865444421 111111 12223445568888
Q ss_pred HHHHHH
Q 008282 414 DFLKQT 419 (571)
Q Consensus 414 dl~~ql 419 (571)
.+++..
T Consensus 218 ~l~~~a 223 (449)
T TIGR00379 218 KLLEIA 223 (449)
T ss_pred HHHHHh
Confidence 776644
No 88
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.22 E-value=1.3e-10 Score=101.28 Aligned_cols=94 Identities=30% Similarity=0.374 Sum_probs=65.8
Q ss_pred EEEEc-CCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 186 ILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 186 I~ivG-~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
|+|.| ++|+||||++.+||.+++++|.+|+++|+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~------------------------------------------ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ------------------------------------------ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC------------------------------------------
Confidence 55654 69999999999999999999999999999987
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHH------HHhhhhcCeeEEEEc
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV------TTFNIEIGITGAILT 330 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~------~~f~~~~~i~GVIlN 330 (571)
||+|||||||..... .. .+.. ..|.+++++++... ....+.. +.++....+.++|+|
T Consensus 40 -~d~viiD~p~~~~~~--~~----~~l~--~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 40 -YDYIIIDTPPSLGLL--TR----NALA--AADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGILPT 104 (104)
T ss_pred -CCEEEEeCcCCCCHH--HH----HHHH--HCCEEEEeccCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 899999999987521 11 1112 24788888877432 2222221 223335556777776
No 89
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.21 E-value=7e-10 Score=115.82 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=36.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++++|+|+|||||||+++.+|.+++++|++|++++.|+..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 5899999999999999999999999999999999999854
No 90
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.19 E-value=2.5e-10 Score=100.83 Aligned_cols=73 Identities=32% Similarity=0.359 Sum_probs=56.5
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 186 ILLA-GLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 186 I~iv-G~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
|+++ +++|+||||++.+||..+++. |++|+++|+|+++..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 4554 679999999999999999998 999999999998653
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
|+|||||||..... .. .+.. ..|.+++|+++..
T Consensus 44 ---D~IIiDtpp~~~~~--~~----~~l~--~aD~vlvvv~~~~ 76 (106)
T cd03111 44 ---DYVVVDLGRSLDEV--SL----AALD--QADRVFLVTQQDL 76 (106)
T ss_pred ---CEEEEeCCCCcCHH--HH----HHHH--HcCeEEEEecCCh
Confidence 89999999987521 11 1111 2478888888743
No 91
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.17 E-value=6.3e-11 Score=118.50 Aligned_cols=93 Identities=27% Similarity=0.393 Sum_probs=53.3
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHH---HHhhhccCCc----eec-CCC------CCC
Q 008282 185 VILL-AGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL---VILGEQVGVP----VYT-AGT------EVK 249 (571)
Q Consensus 185 VI~i-vG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL---~~~~~~~gv~----v~~-~~~------~~~ 249 (571)
||++ .|+|||||||++.+||.+|++.|+||.++|+|.+.+....-+ ..+.+..+++ .+. ... ...
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~ 81 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGE 81 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCc
Confidence 4444 599999999999999999999999999999999876532221 1222222322 110 100 111
Q ss_pred HH--HHHHHHHHHHHhCCCcEEEEeCCCCCc
Q 008282 250 PS--QIAKQGLEEAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 250 p~--~v~~~~l~~~~~~~~DvIIIDTpG~l~ 278 (571)
+. ..+.+++..+. .++|||||||||...
T Consensus 82 ~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 82 NVEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp HHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred chhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 11 13456676665 689999999998753
No 92
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.14 E-value=1.4e-09 Score=109.78 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=111.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc------------hhHHHHHHHhhh-------------ccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLVILGE-------------QVG 238 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R------------p~a~dqL~~~~~-------------~~g 238 (571)
+.|+|.|++|.||||+++||+.+|++.|+||+.|-||+-. +...+.++..+. ..|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 3689999999999999999999999999999999999853 222344433322 124
Q ss_pred CceecCCCCCCH-----HHH---HHHHHHHHH--hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC--c
Q 008282 239 VPVYTAGTEVKP-----SQI---AKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--M 306 (571)
Q Consensus 239 v~v~~~~~~~~p-----~~v---~~~~l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda--~ 306 (571)
+.++..+.+ .| ..- +.+.+++.. ..++|+|+.|..|-.-... +..-+ +--..+++++|.+. +
T Consensus 81 i~CvEsGGP-ePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGG-FamPi----r~g~a~evyIVtSge~m 154 (273)
T PF00142_consen 81 ILCVESGGP-EPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGG-FAMPI----REGYAQEVYIVTSGEFM 154 (273)
T ss_dssp EEEEE---S-CTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTT-TTHHH----HTTS-SEEEEEEBSSHH
T ss_pred ceeeccCCC-cccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEee-eehhh----hhccCCEEEEEecCcHH
Confidence 445544422 22 222 223344332 2458999999866542111 01111 11124788888876 2
Q ss_pred chHH---HHHHHHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE-EEecCCCCCCCccCCchhHhhhccCch
Q 008282 307 TGQE---AAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK-LVGRGERMEDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 307 ~gq~---a~~~~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~-fig~Ge~v~dl~~f~p~~~~~r~lG~g 380 (571)
+-.. +..-+..|.. ...+.|+|+|.-+.....+.+...+..+|.||. +++..+.+... .+....+++......
T Consensus 155 slyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~a-e~~~~TVie~~P~s~ 233 (273)
T PF00142_consen 155 SLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIAFIPRSEIVQRA-ELYGKTVIEAAPDSE 233 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEEEE---HHHHHH-HHCTS-CCCC-TTSH
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEEecCchHHHHHH-HHcCCEEEEeCCCcH
Confidence 2233 3334456654 346789999987766666778889999999985 55544333221 122333333333333
Q ss_pred hHHHHHHHHHHHh
Q 008282 381 DVLSFVEKAQEVM 393 (571)
Q Consensus 381 dv~~l~e~a~e~l 393 (571)
....+.+.|+..+
T Consensus 234 ~a~~yr~LA~~I~ 246 (273)
T PF00142_consen 234 QAQEYRELARKIL 246 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455444
No 93
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.12 E-value=2.4e-09 Score=117.70 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCCcccccccCCCCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH-Hhh---
Q 008282 160 IVRDELVKLMGGEVSELVFAKSRPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-ILG--- 234 (571)
Q Consensus 160 ~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~-~~~--- 234 (571)
.+++.|..-+|.....-.....+|..++|+|. +||||||+++.|+.+|+++ |...-+ .|.+++..- .|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~---GpD~id~~p~~~~~~~ 288 (476)
T PRK06278 215 ILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKI---GPDVRDIVPSLYLLRE 288 (476)
T ss_pred HHHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcC---CCChhhcCCcceeccc
Confidence 34455555445432221222234567889988 9999999999999999976 554333 123332000 011
Q ss_pred hccCCceec--CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccH--H-HHHHHHHHHhhhCCceEEEEEeCcch-
Q 008282 235 EQVGVPVYT--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--A-MMDELKDVKRVLNPTEVLLVVDAMTG- 308 (571)
Q Consensus 235 ~~~gv~v~~--~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~--~-l~~eL~~i~~~~~pd~vlLVvda~~g- 308 (571)
...+.+... ...+.+..+.+ +.+...++|++||+++|.+.... . ......++.+.++ .+++||+|+..+
T Consensus 289 ~~sp~~a~n~~~d~~~~~~~~~----~~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g~ 363 (476)
T PRK06278 289 KMTKYNSIKIGDRGWSDVEEFL----EFVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKSG 363 (476)
T ss_pred ccCChHHHhhcCCcccCHHHHH----HHHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCCh
Confidence 111111222 11123333333 33333478999999998876421 0 0012234555555 689999998544
Q ss_pred -HHHHHHH---HHh--hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEec
Q 008282 309 -QEAAALV---TTF--NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGR 357 (571)
Q Consensus 309 -q~a~~~~---~~f--~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~ 357 (571)
..+...+ ..| ...+.+.|||+|++.+..+...+..+.+.+|+|| +|.
T Consensus 364 i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpV--LG~ 416 (476)
T PRK06278 364 IEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINL--IGV 416 (476)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCE--EEe
Confidence 3444432 345 4467899999999997767777777778899999 777
No 94
>PRK13768 GTPase; Provisional
Probab=99.11 E-value=5.1e-10 Score=113.84 Aligned_cols=152 Identities=23% Similarity=0.345 Sum_probs=82.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-------HHHHHHhhh---ccCC-c---eecCCCCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------IDQLVILGE---QVGV-P---VYTAGTEV 248 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-------~dqL~~~~~---~~gv-~---v~~~~~~~ 248 (571)
+.+++++|++|+||||++.+++.+++.+|++|++|++|+..... +.++....+ ..++ | ++... ..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~-~~ 80 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASV-DL 80 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHH-HH
Confidence 35889999999999999999999999999999999999753210 111111111 1111 0 11000 00
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccH--HHHHHH-HHHHhhhCCceEEEEEeCcch---HHHHHHHHHh---h
Q 008282 249 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK--AMMDEL-KDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF---N 319 (571)
Q Consensus 249 ~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~--~l~~eL-~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f---~ 319 (571)
. ..........+...+.|++||||||...... .....+ ..+... .++.+++|+|+..+ .+........ .
T Consensus 81 ~-~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~-~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~ 158 (253)
T PRK13768 81 L-LTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGS-SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ 158 (253)
T ss_pred H-HHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhc-CCeEEEEEechHHhCCHHHHHHHHHHHHHHH
Confidence 0 1112233444444567999999999764321 111111 111111 15788999998533 2221111100 0
Q ss_pred hhcCe-eEEEEccCCCCCC
Q 008282 320 IEIGI-TGAILTKLDGDSR 337 (571)
Q Consensus 320 ~~~~i-~GVIlNKlD~~~~ 337 (571)
...++ .-+|+||+|....
T Consensus 159 ~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 159 LRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred HHcCCCEEEEEEhHhhcCc
Confidence 02233 3478999996543
No 95
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.07 E-value=6.1e-09 Score=102.72 Aligned_cols=203 Identities=23% Similarity=0.296 Sum_probs=121.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc------------hhHHHHHHHhhh-------------ccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR------------PAAIDQLVILGE-------------QVG 238 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R------------p~a~dqL~~~~~-------------~~g 238 (571)
+.|++.|++|-|||||+.|++++|++.|+||++|-|||-. |...+-++..+. --|
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 4689999999999999999999999999999999999853 333444443221 113
Q ss_pred CceecCCCCCCH--------HHHHHHHHHHHH--hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC--c
Q 008282 239 VPVYTAGTEVKP--------SQIAKQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA--M 306 (571)
Q Consensus 239 v~v~~~~~~~~p--------~~v~~~~l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda--~ 306 (571)
+.++.++.+ .| .-..-+.++++. .+..|+||.|..|..-... +..-+ +--..+++++|.+. +
T Consensus 82 v~CVEsGGP-epGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGG-FAmPi----Reg~AdeiyIVtSge~M 155 (278)
T COG1348 82 VKCVESGGP-EPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGG-FAMPI----REGYADEIYIVTSGEMM 155 (278)
T ss_pred eEEeecCCC-CCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecc-eeeeh----hcccCcEEEEEecCchH
Confidence 444444321 11 011223344431 1346999999987642211 01111 11124788888876 2
Q ss_pred chHHHHHH---HHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE-EEecCCCCCCCccCCchhHhhhccCch
Q 008282 307 TGQEAAAL---VTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK-LVGRGERMEDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 307 ~gq~a~~~---~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~-fig~Ge~v~dl~~f~p~~~~~r~lG~g 380 (571)
.-..+.++ +..|.. .+.+.|+|.|.-..+.....+...++..|.|+. |++..+-+.. ..+....++++.+-..
T Consensus 156 alYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li~~vPr~~ivq~-aE~~~kTvie~~P~s~ 234 (278)
T COG1348 156 ALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVPRDNIVQK-AELNGKTVIEYAPDSN 234 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceEeeccchHHHHH-HHHcCcchhhhCcchh
Confidence 22333333 445654 355789999987666666677788899999874 5555544433 2334455555555555
Q ss_pred hHHHHHHHHHHHh
Q 008282 381 DVLSFVEKAQEVM 393 (571)
Q Consensus 381 dv~~l~e~a~e~l 393 (571)
....+.+.|...+
T Consensus 235 ~a~~yr~LA~~I~ 247 (278)
T COG1348 235 QAEEYRELAKKIL 247 (278)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 96
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.06 E-value=2.4e-09 Score=106.19 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=95.9
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEe---ccCC---chhHHHHHHHhhhccCCce-------ecCCCCCCH-
Q 008282 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA---GDVY---RPAAIDQLVILGEQVGVPV-------YTAGTEVKP- 250 (571)
Q Consensus 186 I~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd---~D~~---Rp~a~dqL~~~~~~~gv~v-------~~~~~~~~p- 250 (571)
++++|. +|+|||++++.|+.+|+++|++|.+.- .... .......+. ...+++. +.......|
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~sp~ 78 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQ---RLSGLPLDYEDVNPYRFEEPLSPH 78 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHH---HHcCCCCChhhcCceeeCCCCCHH
Confidence 567777 999999999999999999999997654 1111 111112222 2222211 101111111
Q ss_pred -----------HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHH
Q 008282 251 -----------SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT 317 (571)
Q Consensus 251 -----------~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~ 317 (571)
.+.+.+.++.+. ++||+|||||+|.+...........++...++ .++++|+++..+ .++...+..
T Consensus 79 ~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~-~pvilV~~~~~~~i~~~~~~i~~ 156 (222)
T PRK00090 79 LAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQ-LPVILVVGVKLGCINHTLLTLEA 156 (222)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhC-CCEEEEECCCCcHHHHHHHHHHH
Confidence 122345555554 78999999999876321100001122333333 678899887544 222232322
Q ss_pred hh-hhcCeeEEEEccCCCC-CC--hhHHHHHHHHhCCCeEEEecCCCCC
Q 008282 318 FN-IEIGITGAILTKLDGD-SR--GGAALSVKEVSGKPIKLVGRGERME 362 (571)
Q Consensus 318 f~-~~~~i~GVIlNKlD~~-~~--~g~~lsi~~~~g~PI~fig~Ge~v~ 362 (571)
+. ..+.+.|+|+|+++.. .. ......+.+.++.|+ +|..+.+.
T Consensus 157 l~~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~v--lg~ip~~~ 203 (222)
T PRK00090 157 IRARGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPL--LGELPYLA 203 (222)
T ss_pred HHHCCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCe--EEecCCCC
Confidence 22 2567889999999865 22 133445666788888 77766653
No 97
>COG1159 Era GTPase [General function prediction only]
Probab=99.02 E-value=3.8e-09 Score=107.95 Aligned_cols=190 Identities=17% Similarity=0.232 Sum_probs=113.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.-.++++|.|.|||||+..+|. |.||++++--++ + +.....|+..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~k~Q---T-----TR~~I~GI~t--------------------- 50 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALV------GQKISIVSPKPQ---T-----TRNRIRGIVT--------------------- 50 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh------cCceEeecCCcc---h-----hhhheeEEEE---------------------
Confidence 3479999999999999999997 999998884332 2 1111222221
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHH--HhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCCCCh
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSRG 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i--~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~~~~ 338 (571)
.+++.+|+|||||.+.....+...|... ...-+.|-+++|+|+..+ .....++..+...--..-+++||+|.....
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK 130 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH
Confidence 1578999999999986644444333222 222346788999998542 233333444443112345899999976655
Q ss_pred hHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHh-------chhHHHHHHHHHHcCCCC
Q 008282 339 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-------QQEDAEEMQKKIMSANFD 411 (571)
Q Consensus 339 g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l-------~e~~~~~~~~k~~~g~~~ 411 (571)
..++.+.+....-.. |..-..++..-| ..+..|.+...+.+ +++...+..+++...++.
T Consensus 131 ~~l~~~~~~~~~~~~-------------f~~ivpiSA~~g-~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEii 196 (298)
T COG1159 131 TVLLKLIAFLKKLLP-------------FKEIVPISALKG-DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEII 196 (298)
T ss_pred HHHHHHHHHHHhhCC-------------cceEEEeecccc-CCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHH
Confidence 434444443322111 111111122222 22444444444444 567788889999999999
Q ss_pred HHHHHHHHHH
Q 008282 412 FNDFLKQTRT 421 (571)
Q Consensus 412 ledl~~ql~~ 421 (571)
+|+++..+++
T Consensus 197 REk~~~~l~e 206 (298)
T COG1159 197 REKLLLLLRE 206 (298)
T ss_pred HHHHHHhccc
Confidence 9998887743
No 98
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.02 E-value=8.6e-09 Score=105.37 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=84.6
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH-HHHHHHHHhhhhcCe-eEEEEccCCCCCC--h
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI-TGAILTKLDGDSR--G 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i-~GVIlNKlD~~~~--~ 338 (571)
++++++.||||||.... ..+...... ..+.+++|+|+..+. ........+....++ ..+++||+|.... .
T Consensus 61 ~~~~~i~liDtPG~~~f----~~~~~~~l~--~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 61 WKGHKINLIDTPGYADF----VGETRAALR--AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred ECCEEEEEEECcCHHHH----HHHHHHHHH--HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 46789999999997532 222222222 348899999997652 221222222233344 4579999996532 2
Q ss_pred hHHHHHHHHhCCCeEEE----ecCCCCCCC---c-----cCCchhHhhhccCchhHHHHHHHHHHHh----chhHHHHHH
Q 008282 339 GAALSVKEVSGKPIKLV----GRGERMEDL---E-----PFYPDRMAGRILGMGDVLSFVEKAQEVM----QQEDAEEMQ 402 (571)
Q Consensus 339 g~~lsi~~~~g~PI~fi----g~Ge~v~dl---~-----~f~p~~~~~r~lG~gdv~~l~e~a~e~l----~e~~~~~~~ 402 (571)
..+..+...++.++..+ +.++.+..+ . .|.+..-....--..+..+.++.+++.+ .+.+++.+.
T Consensus 135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e 214 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELME 214 (268)
T ss_pred HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 33445666778765522 233333111 1 0100000000001123333444444444 334444444
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCch
Q 008282 403 KKIMSANFDFNDFLKQTRTVARMGSM 428 (571)
Q Consensus 403 ~k~~~g~~~ledl~~ql~~~~k~G~~ 428 (571)
+++..++++.+++.+.++.....|.+
T Consensus 215 ~yl~~~~~~~~~l~~~l~~~~~~~~~ 240 (268)
T cd04170 215 KYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCE
Confidence 44444689999999999999988754
No 99
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.99 E-value=8.8e-10 Score=115.43 Aligned_cols=41 Identities=37% Similarity=0.557 Sum_probs=38.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.++++|+|+|||||||+++.+|.++++.|++|++|.+|+-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 47999999999999999999999999999999999999743
No 100
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.98 E-value=6.3e-09 Score=106.90 Aligned_cols=219 Identities=19% Similarity=0.194 Sum_probs=107.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~ 265 (571)
|+++|++|+||||++..|......- .++.-++-. ....|... .-...|+.+.. ....+.+++
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~-~~~g~v~~~---~~~~D~~~-~E~~rgiti~~-------------~~~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI-HKIGEVHGG---GATMDFME-QERERGITIQS-------------AATTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC-cccccccCC---ccccCCCc-cccCCCcCeec-------------cEEEEEECC
Confidence 7899999999999999887543211 111111100 00000000 00011221111 111223568
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCCC-Ch-hHH
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDS-RG-GAA 341 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~~-~~-g~~ 341 (571)
+.+++|||||... +..+....... .|.+++|+|+..+ +........+....++ .-+++||+|... .. ...
T Consensus 64 ~~i~liDTPG~~d----f~~~~~~~l~~--aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~ 137 (270)
T cd01886 64 HRINIIDTPGHVD----FTIEVERSLRV--LDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVV 137 (270)
T ss_pred EEEEEEECCCcHH----HHHHHHHHHHH--cCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHH
Confidence 8999999999753 22232222222 3788999999655 2211222222222222 347999999642 32 334
Q ss_pred HHHHHHhCCCeE----EEecCCCC---CCCccCCchhH-------hhhccCchhHHHHHHHHHHHhch---hHHHHHHHH
Q 008282 342 LSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRM-------AGRILGMGDVLSFVEKAQEVMQQ---EDAEEMQKK 404 (571)
Q Consensus 342 lsi~~~~g~PI~----fig~Ge~v---~dl~~f~p~~~-------~~r~lG~gdv~~l~e~a~e~l~e---~~~~~~~~k 404 (571)
..+.+.++..+. +++.+..+ -|+..-....+ ....--..+..+.++.+++.+.| +.+++++++
T Consensus 138 ~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~ 217 (270)
T cd01886 138 EQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEK 217 (270)
T ss_pred HHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 556666665432 22222221 12211000000 00001122344445555554422 234445555
Q ss_pred HHc-CCCCHHHHHHHHHHHHhcCch
Q 008282 405 IMS-ANFDFNDFLKQTRTVARMGSM 428 (571)
Q Consensus 405 ~~~-g~~~ledl~~ql~~~~k~G~~ 428 (571)
+++ ++++.+++.+.|+.....|.+
T Consensus 218 yl~~~~~~~~el~~~l~~~~~~~~~ 242 (270)
T cd01886 218 YLEGEEITEEEIKAAIRKGTIANKI 242 (270)
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCcE
Confidence 555 589999999999999988843
No 101
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.96 E-value=2.1e-08 Score=101.03 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=81.7
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC-CC-h
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD-SR-G 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~-~~-~ 338 (571)
++++.+.|+||||...... +.....+ ..+.+++|+|+..+ +........+....++ .-+++||+|.. +. .
T Consensus 61 ~~~~~i~liDTPG~~~f~~----~~~~~l~--~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~ 134 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIA----EVERSLS--VLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLE 134 (237)
T ss_pred ECCEEEEEEeCCCccchHH----HHHHHHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHH
Confidence 4678999999999864322 2222222 24788999999765 2222222222222333 34799999964 23 4
Q ss_pred hHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHHHHHcCCCCHHHHHHH
Q 008282 339 GAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQ 418 (571)
Q Consensus 339 g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~k~~~g~~~ledl~~q 418 (571)
..+..+...++.++..+.....+..+. . ..++-+..-|.+.+.+++.+.+++..++++.+++++.
T Consensus 135 ~~~~~i~~~~~~~~~~~~~p~~~~~~~--~-------------~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~ 199 (237)
T cd04168 135 KVYQEIKEKLSSDIVPMQKVGLAPNIC--E-------------TNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNE 199 (237)
T ss_pred HHHHHHHHHHCCCeEEEECCcEeeeee--e-------------eeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHH
Confidence 455667778887665443321111100 0 0011122233333444445555555558999999999
Q ss_pred HHHHHhcCch
Q 008282 419 TRTVARMGSM 428 (571)
Q Consensus 419 l~~~~k~G~~ 428 (571)
|+.....|.+
T Consensus 200 l~~~~~~~~~ 209 (237)
T cd04168 200 LSARIAKRKV 209 (237)
T ss_pred HHHHHHhCCe
Confidence 9999988843
No 102
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.92 E-value=4e-09 Score=101.94 Aligned_cols=144 Identities=23% Similarity=0.304 Sum_probs=98.6
Q ss_pred CC-EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCC-CC--HHHHHHHH
Q 008282 182 RP-TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VK--PSQIAKQG 257 (571)
Q Consensus 182 ~~-~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~-~~--p~~v~~~~ 257 (571)
+| ..|.+.|++||||||++.++...|+++ +++++|..|.|.....+.+... .+.+++...+. .. ++.....+
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHHH
Confidence 45 688889999999999999999999987 9999999999985554555432 67777765554 33 66677778
Q ss_pred HHHHHhC--CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 258 LEEAKKK--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 258 l~~~~~~--~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
++++..+ +.|++||++.|.+.. ...-+ +..+-.++|+|.+.|.+..... +..-..-+-+|+||.|..
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~--~~sp~-------L~d~~~v~VidvteGe~~P~K~--gP~i~~aDllVInK~DLa 155 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVC--PFSPD-------LGDHLRVVVIDVTEGEDIPRKG--GPGIFKADLLVINKTDLA 155 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceec--ccCcc-------hhhceEEEEEECCCCCCCcccC--CCceeEeeEEEEehHHhH
Confidence 8877532 369999999994421 00011 1113568999998886543221 110011245999999977
Q ss_pred CChhH
Q 008282 336 SRGGA 340 (571)
Q Consensus 336 ~~~g~ 340 (571)
...|.
T Consensus 156 ~~v~~ 160 (202)
T COG0378 156 PYVGA 160 (202)
T ss_pred HHhCc
Confidence 66555
No 103
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.92 E-value=5.3e-09 Score=98.96 Aligned_cols=140 Identities=25% Similarity=0.238 Sum_probs=75.2
Q ss_pred EEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch---hH-HHHHHHhhh---ccC--CceecCCC-----------
Q 008282 188 LAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP---AA-IDQLVILGE---QVG--VPVYTAGT----------- 246 (571)
Q Consensus 188 ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp---~a-~dqL~~~~~---~~g--v~v~~~~~----------- 246 (571)
|+|. +|+||||++.+|+.+|+++|+||.++.-..... .. .+.+..+.. ... .++.....
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFALPLSPHIAADQEG 81 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCCCCChHHHHHHhC
Confidence 4555 999999999999999999999999863111110 00 011111000 000 00111000
Q ss_pred -CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhh-hc
Q 008282 247 -EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI-EI 322 (571)
Q Consensus 247 -~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~-~~ 322 (571)
..... .+.+.++.+. ++||+||||+||++........-..++...+ .+++++|++...+ .++......+.. .+
T Consensus 82 ~~~~~~-~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~-~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 82 RPIDLE-ELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL-QLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred CCCCHH-HHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 01111 2345555654 7899999999987542100000112233333 3778999988544 333333344433 67
Q ss_pred CeeEEEEc
Q 008282 323 GITGAILT 330 (571)
Q Consensus 323 ~i~GVIlN 330 (571)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 88999987
No 104
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.89 E-value=6.5e-09 Score=96.78 Aligned_cols=115 Identities=24% Similarity=0.302 Sum_probs=71.5
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHH---------------------------HHHHhhh
Q 008282 184 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID---------------------------QLVILGE 235 (571)
Q Consensus 184 ~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~d---------------------------qL~~~~~ 235 (571)
++|+|+|+ +|+||||++.+||..|+++|++|++||+|.+.+.... .+..+..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 57899986 9999999999999999999999999999987653211 1111111
Q ss_pred ---ccCCceecCCCCCCHHH-----HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 236 ---QVGVPVYTAGTEVKPSQ-----IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 236 ---~~gv~v~~~~~~~~p~~-----v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
..++.++.......+.+ .+...++.++ +.||+||||+|+........ .+.. ..|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~~-----~~l~--~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDTQ-----AVLE--LADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHHH-----HHHT--THSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHHH-----HHHH--HCCEEEEEECCC
Confidence 12333443333322222 3456677776 49999999999988642221 1222 238889998774
No 105
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.89 E-value=9.9e-09 Score=92.34 Aligned_cols=88 Identities=28% Similarity=0.390 Sum_probs=60.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce-ecCCCC-------CCHH-HHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV-YTAGTE-------VKPS-QIAKQ 256 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v-~~~~~~-------~~p~-~v~~~ 256 (571)
|+++|++|+||||++.+||.+|+++|++|+++|+|+ +...+.+.... .+.+. +..+.. ..+. ...++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~--~~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--GEIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc--CCceEEEEecccccCCCCCEehhhHHHHH
Confidence 789999999999999999999999999999999998 33323322111 11111 111110 1122 25567
Q ss_pred HHHHHHhCCCcEEEEeCCCCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l 277 (571)
.+..+...++|++++||++.+
T Consensus 78 ~l~~~~~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeEccCCCEEEEecHHHH
Confidence 777765578999999999876
No 106
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.87 E-value=4.7e-08 Score=108.06 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=96.5
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEecc-----CC--ch---hHHHHHH-Hhhhc----cC-CceecCCC--
Q 008282 186 ILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD-----VY--RP---AAIDQLV-ILGEQ----VG-VPVYTAGT-- 246 (571)
Q Consensus 186 I~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D-----~~--Rp---~a~dqL~-~~~~~----~g-v~v~~~~~-- 246 (571)
|+|+|. ++||||++++.|++.|+++|++|.....- .+ .. ....++. ..+.. .. .|+.....
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 478888 99999999999999999999999854431 00 00 0011211 11100 00 12211110
Q ss_pred ----------CC---C-----------HHHHHHHHHHHHHhCCCcEEEEeCCCCCcc-----cHHHHHHHHHHHhhhCCc
Q 008282 247 ----------EV---K-----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPT 297 (571)
Q Consensus 247 ----------~~---~-----------p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~~~pd 297 (571)
.. + ..+.+++.+..+. .+||+||||++|.+.. +.... ..+.+.+. .
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~---~~lA~~l~-a 155 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLAN---MRIAELAN-A 155 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchH---HHHHHHhC-C
Confidence 00 0 1223445565554 6899999999997643 11112 23333333 6
Q ss_pred eEEEEEeCcchH---HHHHHHHHhhhh--cCeeEEEEccCCCCCCh--hHHHHHHHHhCCCeEEEecCCCCCCC
Q 008282 298 EVLLVVDAMTGQ---EAAALVTTFNIE--IGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERMEDL 364 (571)
Q Consensus 298 ~vlLVvda~~gq---~a~~~~~~f~~~--~~i~GVIlNKlD~~~~~--g~~lsi~~~~g~PI~fig~Ge~v~dl 364 (571)
+++||+|...+. .+...+..++.. ..+.|+|+|++++.... ..+..+.+.+++|+ ++..+...++
T Consensus 156 pVILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~gipv--LG~ip~~~~l 227 (475)
T TIGR00313 156 DAILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELTGIPV--LGVLPYDENL 227 (475)
T ss_pred CEEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhhCCCE--EEEecCCCcC
Confidence 789999986542 222222332332 57899999999875321 22333455679998 7776666554
No 107
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.86 E-value=3e-08 Score=100.20 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-ch-HHHHHHHHHhhhhcCe-eEEEEccCCCCCChhH
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QEAAALVTTFNIEIGI-TGAILTKLDGDSRGGA 340 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~~~~g~ 340 (571)
+..|++|||||++.+. ..+. .+...|.+++|..++ .+ .|..+.++ .-+.+++ .++|+||.+.... .
T Consensus 162 E~~~~~IIDsaaG~gC--pVi~------sl~~aD~ai~VTEPTp~glhD~kr~~e-l~~~f~ip~~iViNr~~~g~s--~ 230 (284)
T COG1149 162 ELADLLIIDSAAGTGC--PVIA------SLKGADLAILVTEPTPFGLHDLKRALE-LVEHFGIPTGIVINRYNLGDS--E 230 (284)
T ss_pred hhcceeEEecCCCCCC--hHHH------hhccCCEEEEEecCCccchhHHHHHHH-HHHHhCCceEEEEecCCCCch--H
Confidence 3379999999998764 2222 233458888888875 33 34333332 3334555 6799999953322 5
Q ss_pred HHHHHHHhCCCeEEEecCCCC
Q 008282 341 ALSVKEVSGKPIKLVGRGERM 361 (571)
Q Consensus 341 ~lsi~~~~g~PI~fig~Ge~v 361 (571)
+...+...|+|+ ++..+..
T Consensus 231 ie~~~~e~gi~i--l~~IPyd 249 (284)
T COG1149 231 IEEYCEEEGIPI--LGEIPYD 249 (284)
T ss_pred HHHHHHHcCCCe--eEECCcc
Confidence 778888999999 5544433
No 108
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.85 E-value=4.7e-08 Score=95.36 Aligned_cols=168 Identities=26% Similarity=0.365 Sum_probs=97.3
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc---hhHHHHHHHhhhccCCc-------eecCCCCCCHHHH
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQLVILGEQVGVP-------VYTAGTEVKPSQI 253 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R---p~a~dqL~~~~~~~gv~-------v~~~~~~~~p~~v 253 (571)
.|+++|. +|||||+++..|+.+|.++|.+|.++--=... ....+.+.. ..+.. -+.......|.-.
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRE---LFGLSEPPDDPSPYTFDEPASPHLA 78 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHH---HCCTCCCHHHHECEEESSSS-HHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHH---HhCCCcccccccccccCcccCHHHH
Confidence 5788888 99999999999999999999999865421111 111222222 22221 1111112222211
Q ss_pred H---------HHH-HHHHHhCCCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHh
Q 008282 254 A---------KQG-LEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF 318 (571)
Q Consensus 254 ~---------~~~-l~~~~~~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f 318 (571)
. .+. ++.+. +++|++||+++|.... ...+. .++.+.++ .++++|+++..+ .++...+..+
T Consensus 79 ~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n---~dia~~L~-a~vIlV~~~~~g~i~~~l~~~~~~ 153 (199)
T PF13500_consen 79 AELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLN---ADIAKALG-APVILVASGRLGTINHTLLTIEAL 153 (199)
T ss_dssp HHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEH---HHHHHHHT--EEEEEEESSTTHHHHHHHHHHHH
T ss_pred hhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHH---HHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 111 13333 6899999999998754 12222 23344444 689999998555 3444334434
Q ss_pred h-hhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCc
Q 008282 319 N-IEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLE 365 (571)
Q Consensus 319 ~-~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~ 365 (571)
. ..+.+.|+|+|+++.. ..+..+.+.+++|+ +|..+...++.
T Consensus 154 ~~~g~~v~GvI~N~~~~~---~~~~~l~~~~~i~v--lg~iP~~~~L~ 196 (199)
T PF13500_consen 154 KQRGIRVLGVILNRVPEP---ENLEALREKSGIPV--LGVIPEDPDLS 196 (199)
T ss_dssp HCTTS-EEEEEEEECTCC---HHHHHHHHHHCCEE--CE---SSTT--
T ss_pred HhcCCCEEEEEEECCCCH---HHHHHHHHhCCCCE--EEECCCCcccc
Confidence 3 3678999999998765 46666778888888 77766665553
No 109
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.82 E-value=1.2e-07 Score=93.33 Aligned_cols=138 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCC---CHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV---KPSQIAKQG 257 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~---~p~~v~~~~ 257 (571)
+++++|+|+|..|+||||++.+|+..+. .+.+|+++..|.......+.+.. .+.+++....+. ........+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~----~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRK----YGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHH----cCCcEEEEcCCCcccCChHHHHHH
Confidence 4678999999999999999999988765 35799999999875433333332 334433322210 111122345
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH-HHHHhhhhcCeeEEEEccCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~-~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
+..+...++|+|||||.|.+..... + .......+.|+|+..+..... ....+. ...-+++||.|..
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~~-------~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPAD-------F--DLGEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADLA 161 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCcc-------c--ccccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHcc
Confidence 5555445789999999995432110 0 112344567888865432211 111111 1145899999964
No 110
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.81 E-value=4.9e-08 Score=82.09 Aligned_cols=69 Identities=36% Similarity=0.515 Sum_probs=53.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
+++++|.+|+||||++.+||..|++.|++|+++|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 4788899999999999999999999999999998
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
|++|+|+++........ .......++.+++|+++.
T Consensus 35 --d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 35 --DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE 69 (99)
T ss_pred --CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCc
Confidence 99999999987543211 011122357778888764
No 111
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.77 E-value=6.6e-08 Score=99.23 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=105.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec-----cCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-----DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~-----D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l 258 (571)
+.|+++|++|+||||++..|......- .+..-++. .+.+... . .....++.+... +
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i-~~~g~v~~~~~~~~t~~D~~-~----~e~~rg~si~~~-------------~ 63 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHATSDWM-E----IEKQRGISVTSS-------------V 63 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCc-ccCceecccccCCCccCCCc-H----HHHhCCCCeEEE-------------E
Confidence 679999999999999999887542210 01111110 0000000 0 000112211110 0
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
..+.+.++.+.||||||..... .+..... ...+.+++|+|+..+ +.....+..+....++ .-+++||+|...
T Consensus 64 ~~~~~~~~~i~liDTPG~~df~----~~~~~~l--~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 64 MQFEYRDCVINLLDTPGHEDFS----EDTYRTL--TAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred EEEeeCCEEEEEEECCCchHHH----HHHHHHH--HHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 1123468899999999964322 2221111 235889999999765 2222223333333333 457889999643
Q ss_pred C-h-hHHHHHHHHhCCCeE----EEecCCCC---CCCccCCchhHhhhccCc--hhHHHHHHHHHHHhchhHHHHHHHHH
Q 008282 337 R-G-GAALSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRMAGRILGM--GDVLSFVEKAQEVMQQEDAEEMQKKI 405 (571)
Q Consensus 337 ~-~-g~~lsi~~~~g~PI~----fig~Ge~v---~dl~~f~p~~~~~r~lG~--gdv~~l~e~a~e~l~e~~~~~~~~k~ 405 (571)
. . ..+..+...++.++. +++.+..+ -|+.......+.+ --|. -....+-+...+.+.+. .+++++++
T Consensus 138 a~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~-~~~~~~~~~~~~p~~~~e~~~e~-~~~l~e~~ 215 (267)
T cd04169 138 RDPLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDR-GAGGATIAPEETKGLDDPKLDEL-GGDLAEQL 215 (267)
T ss_pred CCHHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecC-CCCCccceeccCCcccHHHHHhc-CHHHHHHH
Confidence 2 2 234556677887665 23333332 2222111100100 0010 00010001111233333 34466666
Q ss_pred HcC-CCCHHHHHHHHHHHHhcCch
Q 008282 406 MSA-NFDFNDFLKQTRTVARMGSM 428 (571)
Q Consensus 406 ~~g-~~~ledl~~ql~~~~k~G~~ 428 (571)
.++ +++.+++.+.++.....|.+
T Consensus 216 ~e~~~~~~~~~~~~~~~~~~~~~~ 239 (267)
T cd04169 216 REELELLEGAGPEFDQEAFLAGEL 239 (267)
T ss_pred hCCCccchhhhHHHhHHHHHcCCE
Confidence 665 79999988888887777743
No 112
>PRK00784 cobyric acid synthase; Provisional
Probab=98.75 E-value=2.5e-07 Score=102.78 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=97.0
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEec-----------cCCchhHHHHHHHh-hhc----cCCceecCC-C
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAG-----------DVYRPAAIDQLVIL-GEQ----VGVPVYTAG-T 246 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~-----------D~~Rp~a~dqL~~~-~~~----~gv~v~~~~-~ 246 (571)
.++|+|. +|||||++++.|+++|+++|++|...-. |-..+.....+... +.. .--|++... .
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~~~~~s 83 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLKPQS 83 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEEecCCC
Confidence 4888888 9999999999999999999999884332 00000011111100 000 001111100 0
Q ss_pred ------------------------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcc----cHHHHHHHHHHHhhhCCce
Q 008282 247 ------------------------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI----DKAMMDELKDVKRVLNPTE 298 (571)
Q Consensus 247 ------------------------~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~----d~~l~~eL~~i~~~~~pd~ 298 (571)
.....+.+.+.+..+. .++|++|||++|.+.. +.. ....++.+.++ .+
T Consensus 84 p~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~--~~~~dlak~l~-~P 159 (488)
T PRK00784 84 DRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRD--IANMGFAEAAD-AP 159 (488)
T ss_pred CCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCC--chhHHHHHHcC-CC
Confidence 0011233455555544 6899999999976541 111 11234445554 68
Q ss_pred EEEEEeCcch---HHHHHHHHHhhh--hcCeeEEEEccCCCCCC--hhHHHHHHHHhCCCeEEEecCCCCCCCc
Q 008282 299 VLLVVDAMTG---QEAAALVTTFNI--EIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDLE 365 (571)
Q Consensus 299 vlLVvda~~g---q~a~~~~~~f~~--~~~i~GVIlNKlD~~~~--~g~~lsi~~~~g~PI~fig~Ge~v~dl~ 365 (571)
+++|+++..+ ..+......+.. ...+.|+|+|+++++.. ......+.+.+++|+ +|..+..+++.
T Consensus 160 VILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipv--LG~iP~~~~L~ 231 (488)
T PRK00784 160 VILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPV--LGVLPYLDDLR 231 (488)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcCCC
Confidence 8999998543 222222233332 35889999999986521 112222445678888 77777766554
No 113
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.73 E-value=1.9e-07 Score=88.34 Aligned_cols=144 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-------CCCHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-------EVKPSQIAKQG 257 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-------~~~p~~v~~~~ 257 (571)
+++++|..|+||||+...+.... .|.++.++..|......-.+.. ...+.+++.... ..+..+.+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~~---~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQLV---VDTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHHH---hCCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 68899999999999999887653 4889998888754433222211 123344444332 12222223333
Q ss_pred HHHH--HhCCCcEEEEeCCCCCcccHHHHHHH---HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEcc
Q 008282 258 LEEA--KKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 331 (571)
Q Consensus 258 l~~~--~~~~~DvIIIDTpG~l~~d~~l~~eL---~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNK 331 (571)
++.+ ....+|+|+|||||..... ..+..+ ..+......+.++.|+|+............+..++.. +-||+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~-~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHH-HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 3332 1257999999999987532 333322 1233344457889999986543322111222222222 4589999
Q ss_pred CCC
Q 008282 332 LDG 334 (571)
Q Consensus 332 lD~ 334 (571)
.|.
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 983
No 114
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.73 E-value=1.1e-07 Score=91.50 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCC---CHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEV---KPSQIAKQGLEEA 261 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~---~p~~v~~~~l~~~ 261 (571)
|++++|.-||||||+..+|.. ...+|.++++|-.|.-....-.++. ...|++++....+- +...-+...+..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l---~~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELL---QEDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHH---HTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhh---cccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 789999999999999999998 6677999999999865544322221 23355554433211 0011122344444
Q ss_pred Hh-C--CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCC
Q 008282 262 KK-K--NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR 337 (571)
Q Consensus 262 ~~-~--~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~ 337 (571)
.. . ++|+|||++.|..+...- +..-..+...+..+.++.|+|+..-.........+.+.+.. +-||+||.|....
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p~~l-~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADPAPL-ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD 156 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGGGGH-HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH
T ss_pred HHhcCCCcCEEEECCccccccchh-hhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh
Confidence 32 3 589999999996554333 22234444555668889999995432111112223333333 5699999996543
No 115
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.71 E-value=3.6e-07 Score=91.64 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=95.8
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch-----hH-HHHHHHhhhccCCce---------ecCC---
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----AA-IDQLVILGEQVGVPV---------YTAG--- 245 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp-----~a-~dqL~~~~~~~gv~v---------~~~~--- 245 (571)
.++|+|. +|+|||++++.|+.+|.++|++|.++--=.... +. -++...+.+..+++. +...
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 4788887 999999999999999999999998654211110 00 011111222222210 1000
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHh-
Q 008282 246 ----TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF- 318 (571)
Q Consensus 246 ----~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f- 318 (571)
...+..+ +.+.++.+. +++|+||||++|++...-.-...+.++.... ..++++|+....+ ..+.-....+
T Consensus 84 ~~~~~~i~~~~-i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~-~~pvilV~~~~lg~in~~lLt~~~l~ 160 (231)
T PRK12374 84 VAHSCPINYTL-MSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQE-QLPVLMVVGIQEGCINHALLTAQAIA 160 (231)
T ss_pred HHcCCcCCHHH-HHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHh-CCCEEEEECCCcChHHHHHHHHHHHH
Confidence 0112223 344555554 7899999999996543110001122222333 3678899877555 2333333333
Q ss_pred hhhcCeeEEEEccCCCCCCh--hHHHHHHHHhCCCeEEEecCCCCC
Q 008282 319 NIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPIKLVGRGERME 362 (571)
Q Consensus 319 ~~~~~i~GVIlNKlD~~~~~--g~~lsi~~~~g~PI~fig~Ge~v~ 362 (571)
...+.+.|+|+|+++..... .....+.+..+.|+ ++..+...
T Consensus 161 ~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~--lg~iP~~~ 204 (231)
T PRK12374 161 NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPL--IGELPYLP 204 (231)
T ss_pred hCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCE--EEEeCCCC
Confidence 33678899999999865321 22333445567777 66655443
No 116
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.64 E-value=2.3e-07 Score=93.69 Aligned_cols=121 Identities=23% Similarity=0.305 Sum_probs=71.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc-----hhH---------HHHHHHhhhccCCcee-cCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----PAA---------IDQLVILGEQVGVPVY-TAG 245 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R-----p~a---------~dqL~~~~~~~gv~v~-~~~ 245 (571)
++|.+|+++|..||||||++..|-.++..++....+|.+|+-- |+. .+-++.|.-..+--+. ...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 3577899999999999999999999999988889999999621 111 1112222111000000 000
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcc------cHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 246 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI------DKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 246 ~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~------d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
......+.+...++... +.+|+|||||||.+.. ..-+.+.+ ...-|.-+++|+|..
T Consensus 97 LF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~l----ass~ptvv~YvvDt~ 158 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETL----ASSFPTVVVYVVDTP 158 (366)
T ss_pred HHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhH----hhcCCeEEEEEecCC
Confidence 00011112224455543 6799999999998754 11222222 233467888899863
No 117
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.63 E-value=2.4e-07 Score=93.53 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH-HhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~L-a~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.++++|++|+||||+...|+... ...| ...++..+++.....+...++.....+.. ...+..++ .+.++.+..
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~--~g~~t~~p~~i~l~~~~~~~~~~~~~~~~---~~~~~~~v-~~~i~~~~~ 101 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLILQLINSSTEYAEFLHCKGK---KFTDFDEV-RNEIEAETD 101 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccC--CCcccccceEEEccCCCCcceEEEecCCc---ccCCHHHH-HHHHHHHHH
Confidence 68899999999999999998531 1111 22333333332222222223333222211 11233322 223322210
Q ss_pred ---------------------CCCcEEEEeCCCCCcc-----cHHHHHHHHH-HHhhhC-C-ceEEEEEeCcch---HHH
Q 008282 264 ---------------------KNVDVVIVDTAGRLQI-----DKAMMDELKD-VKRVLN-P-TEVLLVVDAMTG---QEA 311 (571)
Q Consensus 264 ---------------------~~~DvIIIDTpG~l~~-----d~~l~~eL~~-i~~~~~-p-d~vlLVvda~~g---q~a 311 (571)
...|+.||||||.... .......+.. +...+. + +-+++|+|+..+ +++
T Consensus 102 ~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~ 181 (240)
T smart00053 102 RVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA 181 (240)
T ss_pred HhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH
Confidence 1279999999999743 1222222322 222333 3 356788888543 565
Q ss_pred HHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHH
Q 008282 312 AALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEV 347 (571)
Q Consensus 312 ~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~ 347 (571)
...++.+...-.-.-+|+||+|....+..+..+...
T Consensus 182 l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~ 217 (240)
T smart00053 182 LKLAKEVDPQGERTIGVITKLDLMDEGTDARDILEN 217 (240)
T ss_pred HHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhC
Confidence 677777765444455799999987666555555443
No 118
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.62 E-value=5.7e-07 Score=82.77 Aligned_cols=122 Identities=25% Similarity=0.279 Sum_probs=78.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~ 265 (571)
+.++| .|+||||++..|+..|.++|.+|..+ ||...
T Consensus 3 ~~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~-----kp~~~-------------------------------------- 38 (134)
T cd03109 3 GFGTG-TDIGKTVATAILARALKEKGYRVAPL-----KPVQT-------------------------------------- 38 (134)
T ss_pred EEeCC-CCcCHHHHHHHHHHHHHHCCCeEEEE-----ecCCC--------------------------------------
Confidence 34556 55999999999999999999999944 44321
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHh-hhhcCeeEEEEccCCCCCC--hhH
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSR--GGA 340 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f-~~~~~i~GVIlNKlD~~~~--~g~ 340 (571)
+|++|||++|.+......-....++.+.++ .++++|.+...+ .++...+... ...+.+.|+|.|.++.... ...
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~ 117 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLN 117 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhh
Confidence 699999999887631000001123333333 568888877443 3333333322 2256778999999886532 133
Q ss_pred HHHHHHHhCCCe
Q 008282 341 ALSVKEVSGKPI 352 (571)
Q Consensus 341 ~lsi~~~~g~PI 352 (571)
...+.+.++.|+
T Consensus 118 ~~~i~~~~gip~ 129 (134)
T cd03109 118 VETIERLTGIPV 129 (134)
T ss_pred HHHHHHhcCCCE
Confidence 556677788887
No 119
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.61 E-value=1.1e-06 Score=87.54 Aligned_cols=173 Identities=24% Similarity=0.318 Sum_probs=102.3
Q ss_pred EEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-----HHHHHhhhccCCc-------eecCCCCCCH
Q 008282 184 TVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-----DQLVILGEQVGVP-------VYTAGTEVKP 250 (571)
Q Consensus 184 ~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-----dqL~~~~~~~gv~-------v~~~~~~~~p 250 (571)
+.++|+|. +|+|||.+++.|+.+++.+|++|...- +...+.. ++...+.+..+++ .|.......|
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K--PVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sP 80 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK--PVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSP 80 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC--ceeeCCCCCCCCchHHHHHHhcCCCcccccccceecCCCCCc
Confidence 36889999 999999999999999999999998433 1111111 1233344444433 1211222233
Q ss_pred H------------HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHH
Q 008282 251 S------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVT 316 (571)
Q Consensus 251 ~------------~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~ 316 (571)
. +.+...+..+. ..||+|||+++|++...-.--.-+.++....+ .+++||+....| ..+.-.+.
T Consensus 81 hlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~-lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 81 HLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQ-LPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred HHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcC-CCEEEEecCCccHHHHHHHHHH
Confidence 2 12234444554 58999999999997541100022233444443 788999988655 34433343
Q ss_pred Hh-hhhcCeeEEEEccCCCCCC-hhHH-HHHHHHhCCCeEEEecCCCCC
Q 008282 317 TF-NIEIGITGAILTKLDGDSR-GGAA-LSVKEVSGKPIKLVGRGERME 362 (571)
Q Consensus 317 ~f-~~~~~i~GVIlNKlD~~~~-~g~~-lsi~~~~g~PI~fig~Ge~v~ 362 (571)
.. ...+++.|+|+|.+..... .... ..+...++.|+ ++..+...
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~--~g~~p~~~ 205 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRIGAPL--LGIIPYLP 205 (223)
T ss_pred HHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhcCCCc--cccccCCc
Confidence 33 4478899999999875433 2222 24667788887 55544443
No 120
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.58 E-value=1.2e-06 Score=101.11 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=82.2
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.++++|. +|+|||+++..|+.+|.++|++|.+.--+...|...+....+ +..+......+.+.+.+..+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~--------~~~~~~~~~~~~I~~~~~~l~- 74 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEAL--------LASGQLDELLEEIVARYHALA- 74 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHH--------HhccCChHHHHHHHHHHHHhc-
Confidence 4777777 999999999999999999999999655322222111111110 001001112233445555554
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHH----HHhh--hhcCeeEEEEcc--CC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALV----TTFN--IEIGITGAILTK--LD 333 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~----~~f~--~~~~i~GVIlNK--lD 333 (571)
.+||+||||+++....+........++.+.++ .++++|+++..+ .++.+.+ ..|. ....+.|+|+|+ ++
T Consensus 75 ~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~-~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~ 153 (684)
T PRK05632 75 KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLG-AEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNAP 153 (684)
T ss_pred cCCCEEEEeCcCCCCcCcccCchHHHHHHHhC-CCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC
Confidence 78999999998755421100111133444444 788999987432 2322222 2332 357889999999 55
Q ss_pred CC
Q 008282 334 GD 335 (571)
Q Consensus 334 ~~ 335 (571)
..
T Consensus 154 ~~ 155 (684)
T PRK05632 154 VD 155 (684)
T ss_pred HH
Confidence 44
No 121
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.58 E-value=4.5e-07 Score=74.93 Aligned_cols=75 Identities=29% Similarity=0.595 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHH
Q 008282 88 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDEL 165 (571)
Q Consensus 88 l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL 165 (571)
|+++|.++++++.+...+++++|++.+++|+.+|+++||+++++.+|+++++++..+ .+++++.+.+.++++++|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 678899999999998778999999999999999999999999999999999995444 356778888889988876
No 122
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.58 E-value=5.5e-07 Score=95.77 Aligned_cols=124 Identities=22% Similarity=0.345 Sum_probs=78.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch-----hHHHHH------HHhhhccCCceecCC---
Q 008282 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-----AAIDQL------VILGEQVGVPVYTAG--- 245 (571)
Q Consensus 180 ~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp-----~a~dqL------~~~~~~~gv~v~~~~--- 245 (571)
...+.++|++|+.+|||||+++-||..+..+|++|.++|+|+-.+ +.+.-. ..+.+......+..+
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence 345679999999999999999999999999999999999997542 221000 001111111111111
Q ss_pred CCCCHHHH---HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 246 TEVKPSQI---AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 246 ~~~~p~~v---~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
+...+... +..+++.++ +..|+|||||+|...- ..-++-...+..+++|+.++.+=++
T Consensus 150 P~~~~~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G-~~g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 150 PQGFPGRYIAGVARLVDLAK-KEADFILIDTDGWIKG-WGGLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CCCChHHHHHHHHHHHHHhh-ccCCEEEEcCCCceeC-chHHHHHHHHHhhcCCCEEEEeccc
Confidence 12223322 345566665 3479999999998753 2334445667778888887766444
No 123
>PRK00089 era GTPase Era; Reviewed
Probab=98.57 E-value=5.4e-07 Score=93.09 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=68.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..+|+++|.+||||||++..|. |.++..+...+.... ....+ ++ .
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~tt~--------~~i~~--i~-------------------~ 49 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR--------HRIRG--IV-------------------T 49 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHh------CCceeecCCCCCccc--------ccEEE--EE-------------------E
Confidence 3579999999999999998886 777776654332110 00000 00 0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHH--HHhhhCCceEEEEEeCcc--hHHHHHHHHHhhhhcC-eeEEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMT--GQEAAALVTTFNIEIG-ITGAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~--i~~~~~pd~vlLVvda~~--gq~a~~~~~~f~~~~~-i~GVIlNKlD~~~ 336 (571)
.++++++++||||.......+-..+.. .......|.+++|+|+.. ............ ..+ ..-+|+||+|...
T Consensus 50 ~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~-~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 50 EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLK-KVKTPVILVLNKIDLVK 127 (292)
T ss_pred cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHh-hcCCCEEEEEECCcCCC
Confidence 145789999999986543222222211 112234688899999864 222222233222 222 2458999999763
No 124
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.55 E-value=1.1e-06 Score=88.73 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=37.7
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a 226 (571)
++++++ |++||||||++++||.+++++|++|+++|+|+..+..
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 355555 8899999999999999999999999999999988643
No 125
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.54 E-value=1.7e-07 Score=94.62 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=28.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 188 LAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 188 ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
|+|+.||||||.+..+..++...|++|.+|..||-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 57999999999999999999999999999999974
No 126
>PRK00007 elongation factor G; Reviewed
Probab=98.53 E-value=1.9e-06 Score=99.58 Aligned_cols=139 Identities=21% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe-----ccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 256 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd-----~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~ 256 (571)
..+.|+++|..++||||++..|........ ++.-++ +|.. +. + ...|+.+....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~~~~~D~~-~~--E------~~rg~ti~~~~----------- 67 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDGAATMDWM-EQ--E------QERGITITSAA----------- 67 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCCcccCCCC-HH--H------HhCCCCEeccE-----------
Confidence 457899999999999999998875443210 111111 1110 00 0 11122221110
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhh--hcCeeEEEEccCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLD 333 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~--~~~i~GVIlNKlD 333 (571)
..+.+.++.+.||||||... .+.++...... .|.+++|+|+..| +.....+..+.. ..++ -+++||+|
T Consensus 68 --~~~~~~~~~~~liDTPG~~~----f~~ev~~al~~--~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~-iv~vNK~D 138 (693)
T PRK00007 68 --TTCFWKDHRINIIDTPGHVD----FTIEVERSLRV--LDGAVAVFDAVGGVEPQSETVWRQADKYKVPR-IAFVNKMD 138 (693)
T ss_pred --EEEEECCeEEEEEeCCCcHH----HHHHHHHHHHH--cCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCC
Confidence 11235688999999999653 22333222222 3788999999655 211122222222 2343 48999999
Q ss_pred CCC-C-hhHHHHHHHHhCC
Q 008282 334 GDS-R-GGAALSVKEVSGK 350 (571)
Q Consensus 334 ~~~-~-~g~~lsi~~~~g~ 350 (571)
... . ......+.+.++.
T Consensus 139 ~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 139 RTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 542 2 2334455566665
No 127
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.52 E-value=3.8e-06 Score=97.15 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE-eccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV-AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV-d~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
+.+.|+++|..++||||++..|....... .++.-+ +.+.+.-.. .+ -...|+.+... ...
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~~~~D~~-~~----e~~rgiti~~~-------------~~~ 69 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGAATMDWM-EQ----EKERGITITSA-------------ATT 69 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCccccCCC-HH----HHhcCCCEecc-------------eEE
Confidence 46789999999999999999887533211 011000 000000000 00 00112222111 011
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCe-eEEEEccCCCCC-
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i-~GVIlNKlD~~~- 336 (571)
+.++++.++||||||...... +...... ..|.+++|+|+..+. ....... +....++ .-+++||+|...
T Consensus 70 ~~~~~~~i~liDTPG~~~~~~----~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~-~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 70 VFWKGHRINIIDTPGHVDFTV----EVERSLR--VLDGAVAVLDAVGGVQPQSETVWR-QANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred EEECCeEEEEEECCCCcchhH----HHHHHHH--HhCEEEEEEeCCCCCChhHHHHHH-HHHHcCCCEEEEEECCCCCCC
Confidence 234688999999999864322 2222222 238899999997651 1122222 2222222 347999999642
Q ss_pred C-hhHHHHHHHHhCC
Q 008282 337 R-GGAALSVKEVSGK 350 (571)
Q Consensus 337 ~-~g~~lsi~~~~g~ 350 (571)
. ...+..+...++.
T Consensus 143 ~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 143 NFLRVVNQIKQRLGA 157 (689)
T ss_pred CHHHHHHHHHHHhCC
Confidence 2 2334455566554
No 128
>PRK12739 elongation factor G; Reviewed
Probab=98.47 E-value=4.2e-06 Score=96.81 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
..+.|+++|+.++||||++..|....... .++.-++.. ....|.+. .-..-|+.+-.. ...+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~-~~~~~v~~~---~~~~D~~~-~E~~rgiti~~~-------------~~~~ 68 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKS-HKIGEVHDG---AATMDWME-QEQERGITITSA-------------ATTC 68 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCC---ccccCCCh-hHhhcCCCccce-------------eEEE
Confidence 46789999999999999999887543321 011111100 00000000 000112211110 0112
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhh--hcCeeEEEEccCCCCC--
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNI--EIGITGAILTKLDGDS-- 336 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~--~~~i~GVIlNKlD~~~-- 336 (571)
.++++.+++|||||... .+.+...... ..|.+++|+|+..+ +.....+..+.. ..++ -+++||+|...
T Consensus 69 ~~~~~~i~liDTPG~~~----f~~e~~~al~--~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~~~ 141 (691)
T PRK12739 69 FWKGHRINIIDTPGHVD----FTIEVERSLR--VLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIGAD 141 (691)
T ss_pred EECCEEEEEEcCCCHHH----HHHHHHHHHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC
Confidence 35788999999999642 3333322222 23789999999765 111112222222 3343 48999999652
Q ss_pred ChhHHHHHHHHhCC
Q 008282 337 RGGAALSVKEVSGK 350 (571)
Q Consensus 337 ~~g~~lsi~~~~g~ 350 (571)
....+..+...++.
T Consensus 142 ~~~~~~~i~~~l~~ 155 (691)
T PRK12739 142 FFRSVEQIKDRLGA 155 (691)
T ss_pred HHHHHHHHHHHhCC
Confidence 22334445555554
No 129
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.47 E-value=6.3e-07 Score=84.80 Aligned_cols=135 Identities=27% Similarity=0.356 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+.|||||+...|. |.++.+-. | |+. +.....|.. ...
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~v~n---~-pG~-----Tv~~~~g~~---------------------~~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQKVGN---W-PGT-----TVEKKEGIF---------------------KLG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEEEEE---S-TTS-----SSEEEEEEE---------------------EET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCceecC---C-CCC-----CeeeeeEEE---------------------Eec
Confidence 48999999999999998887 76654222 1 221 000010100 114
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHH--HHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCChhH-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSRGGA- 340 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~--~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~~g~- 340 (571)
+..+.|||+||.........+|.. .....-++|.+++|+|++.-+........+. +.++ .-+++||+|...+.|.
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~-e~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLL-ELGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHH-HTTSSEEEEEETHHHHHHTTEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEEeCHHHHHHcCCE
Confidence 678999999996543211112211 1111236899999999977655445555444 3444 4589999997755443
Q ss_pred --HHHHHHHhCCCeEEEe
Q 008282 341 --ALSVKEVSGKPIKLVG 356 (571)
Q Consensus 341 --~lsi~~~~g~PI~fig 356 (571)
...+.+.+|.||.++.
T Consensus 125 id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 125 IDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp E-HHHHHHHHTS-EEEEB
T ss_pred ECHHHHHHHhCCCEEEEE
Confidence 4567778999995443
No 130
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.46 E-value=1.7e-06 Score=79.28 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=65.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|++|+||||++..|. |.++..+..+..... . -+... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~~~----------~-~~~~~------------------~~ 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTR----------N-RIRGI------------------YT 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCcee----------c-eEEEE------------------EE
Confidence 3579999999999999998886 556655443221100 0 00000 00
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHH--HHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~--~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
..+++++++||||...........+. ........+.+++|+|+... +........+...-....+|+||+|...
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 13578999999997643222111111 11122345788999998643 2222222222221123468999999763
No 131
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.45 E-value=1.3e-06 Score=90.39 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=87.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCC---CCHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE---VKPSQIAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~---~~p~~v~~~~l 258 (571)
+..++.|+|.+|+||||++.+|...|... .+++++..|.......+.+ ...|++++..... -.....+..++
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI----~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARI----RATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHH----HhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 45689999999999999999999888754 5899999997655422222 3456676654432 11234456778
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
..+...+.|++||++.|.+-..... .+ .....+.|++...+.+. ...|...+.. +-+|+||+|...
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f-----dl----ge~~~v~vlsV~eg~dk---plKyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF-----DL----GEKHKVAVLSVTEGEDK---PLKYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc-----ch----hhceeEEEEECcccccc---chhccchhhcCcEEEEEhHHcCc
Confidence 8877778999999999964221110 11 11233566676655331 1123222222 458999999754
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.43 E-value=1.6e-06 Score=88.90 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=64.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+||||||+...|. |.++..+.--+ .... ....++.. ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~~~---~TTr-----~~i~~i~~---------------------~~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSPKA---QTTR-----NRISGIHT---------------------TG 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCCCC---Cccc-----CcEEEEEE---------------------cC
Confidence 48899999999999998887 66765444221 1100 00001100 14
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHH-HHH-hhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELK-DVK-RVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~-~i~-~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
++.++++||||.......+...+. ... ..-..|.+++|+|+.........+..+....+. .-+|+||+|...
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKF 121 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCC
Confidence 567999999997643222222221 111 123468889999986442111211111112222 458999999753
No 133
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.2e-06 Score=98.22 Aligned_cols=218 Identities=22% Similarity=0.250 Sum_probs=119.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCC--eEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~--kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
..+.|.++++-++|||||+-.|-++-..-.+ +|. +.+++- +..+| -..-|+.+-....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~--~g~~~~-D~~e~----EqeRGITI~saa~------------- 68 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVH--DGAATM-DWMEQ----EQERGITITSAAT------------- 68 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCcccc--CCCccC-CCcHH----HHhcCCEEeeeee-------------
Confidence 4689999999999999999888655332111 111 011110 00011 1122444432211
Q ss_pred HHHhC-CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC-
Q 008282 260 EAKKK-NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD- 335 (571)
Q Consensus 260 ~~~~~-~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~- 335 (571)
.+.|+ ++.+.||||||...+..+....| +++ |.+++|+|+..| +...+.+++.....++ .-+++||+|..
T Consensus 69 s~~~~~~~~iNlIDTPGHVDFt~EV~rsl----rvl--DgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 69 TLFWKGDYRINLIDTPGHVDFTIEVERSL----RVL--DGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG 142 (697)
T ss_pred EEEEcCceEEEEeCCCCccccHHHHHHHH----Hhh--cceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc
Confidence 12356 49999999999886555544444 333 889999999776 3344555555555555 45789999954
Q ss_pred -CChhHHHHHHHHhCCCeE----EEecCCCCCC---CccCCchhHh-hhccC----chhHHHHHHHHHHHh----chhHH
Q 008282 336 -SRGGAALSVKEVSGKPIK----LVGRGERMED---LEPFYPDRMA-GRILG----MGDVLSFVEKAQEVM----QQEDA 398 (571)
Q Consensus 336 -~~~g~~lsi~~~~g~PI~----fig~Ge~v~d---l~~f~p~~~~-~r~lG----~gdv~~l~e~a~e~l----~e~~~ 398 (571)
........+...++.++. .++..+...+ +..-....+- ..... ..+..+..+++++.+ .+-+
T Consensus 143 a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~d- 221 (697)
T COG0480 143 ADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFD- 221 (697)
T ss_pred cChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcC-
Confidence 334455566777776544 3333222221 1100000000 00000 012223333333333 2332
Q ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhcC
Q 008282 399 EEMQKKIMSA-NFDFNDFLKQTRTVARMG 426 (571)
Q Consensus 399 ~~~~~k~~~g-~~~ledl~~ql~~~~k~G 426 (571)
+++++++++| +++.+++.+.+++-..-+
T Consensus 222 e~l~e~yl~g~e~~~~~i~~~i~~~~~~~ 250 (697)
T COG0480 222 EELMEKYLEGEEPTEEEIKKALRKGTIAG 250 (697)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHhhhcc
Confidence 5677777777 799999999998887774
No 134
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.42 E-value=2.9e-06 Score=83.16 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH-hhh--ccCCceecCCCCCCHHHH---HH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI-LGE--QVGVPVYTAGTEVKPSQI---AK 255 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~-~~~--~~gv~v~~~~~~~~p~~v---~~ 255 (571)
+..++.++|++|+|||+++..++....++|.+|++++++-+.+..+.+... +.+ ..++.++.. .++.+. +.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~ 87 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEV---FDFDEQGVAIQ 87 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEEC---CCHHHHHHHHH
Confidence 357999999999999999999999988889999999998655544333221 100 112223322 222222 33
Q ss_pred HHHHHHHhCCCcEEEEeCCCC
Q 008282 256 QGLEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 256 ~~l~~~~~~~~DvIIIDTpG~ 276 (571)
...+.+.+.++++|+||+-..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 333334444688899988654
No 135
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3e-06 Score=84.73 Aligned_cols=41 Identities=37% Similarity=0.447 Sum_probs=37.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
-+.|++-|++||||||.++.||..|++-+.+|++|.+|+-.
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 35788889999999999999999999999999999999865
No 136
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.40 E-value=4e-06 Score=83.27 Aligned_cols=61 Identities=30% Similarity=0.463 Sum_probs=48.4
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHH
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL 230 (571)
+.|.++++++.. ...++.++|++|+|||+++..+|..+++.|.+|++++++.+.+....++
T Consensus 10 ~~lD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~ 70 (225)
T PRK09361 10 KMLDELLGGGFE-------RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQI 70 (225)
T ss_pred HHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH
Confidence 457777765432 3579999999999999999999999988999999999995544444433
No 137
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.40 E-value=9.5e-06 Score=79.75 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=78.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec--------CCCCCCHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT--------AGTEVKPSQIA 254 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~--------~~~~~~p~~v~ 254 (571)
|..|+++|++|+||||++.++...+... .++.++..|.+.....+.+...+....-.+.. .....+....
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMN- 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHH-
Confidence 4579999999999999999998777653 56888999987644333332222100001111 0011122111
Q ss_pred HHHHHHHH--hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEcc
Q 008282 255 KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTK 331 (571)
Q Consensus 255 ~~~l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNK 331 (571)
..++..+. ..++|+|||+|.|..-. ...... + .+.++.|+|+..+.+.... ....+.. +-+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~-~~~~~~-------l-~~~~i~vvD~~~~~~~~~~---~~~qi~~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLS-ATFSPE-------L-ADLTIFVIDVAAGDKIPRK---GGPGITRSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcc-cccchh-------h-hCcEEEEEEcchhhhhhhh---hHhHhhhccEEEEEh
Confidence 23333332 24699999999994211 111111 1 2568999999876553221 1223322 4589999
Q ss_pred CCCC
Q 008282 332 LDGD 335 (571)
Q Consensus 332 lD~~ 335 (571)
.|..
T Consensus 147 ~d~~ 150 (199)
T TIGR00101 147 IDLA 150 (199)
T ss_pred hhcc
Confidence 9975
No 138
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.6e-06 Score=82.91 Aligned_cols=45 Identities=33% Similarity=0.528 Sum_probs=41.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
++|.+|+|+|++|+||||+|..|...|.++|+.|.+.|+|..|-+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 467899999999999999999999999999999999999976643
No 139
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.39 E-value=1.4e-06 Score=97.45 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=80.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec---cCCc-hhHHHHHHHhhhccCCceecCCCCCCHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG---DVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~---D~~R-p~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~ 257 (571)
..+.|+++|+.|+||||++.+|.++...- .+..-|+. +.+. .... . .-...|+.+...
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i-~~~g~v~~~~~~~~~~~D~~-~---~E~~rgiSi~~~------------- 70 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGRHATSDWM-E---MEKQRGISVTSS------------- 70 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCc-cccceeeccccCccccCCCc-H---HHHhhCCceeee-------------
Confidence 45789999999999999999886432210 11112211 0000 0000 0 001112222111
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
+..+.++++.+.||||||........... .. ..|.+++|+|+..+ +.....+..+....++ .-+++||+|..
T Consensus 71 ~~~~~~~~~~inliDTPG~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 71 VMQFPYRDCLINLLDTPGHEDFSEDTYRT----LT--AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred eEEEEECCEEEEEEECCCchhhHHHHHHH----HH--HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence 00112467889999999975332222222 12 34889999999765 2222222233322333 45789999964
Q ss_pred C-Ch-hHHHHHHHHhCCCeE----EEecCCCC
Q 008282 336 S-RG-GAALSVKEVSGKPIK----LVGRGERM 361 (571)
Q Consensus 336 ~-~~-g~~lsi~~~~g~PI~----fig~Ge~v 361 (571)
. .. ..+..+...++.++. ++|.|...
T Consensus 145 ~a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f 176 (526)
T PRK00741 145 GREPLELLDEIEEVLGIACAPITWPIGMGKRF 176 (526)
T ss_pred ccCHHHHHHHHHHHhCCCCeeEEeccccCCce
Confidence 3 32 334556677887654 34444443
No 140
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.3e-06 Score=89.92 Aligned_cols=98 Identities=27% Similarity=0.510 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCc
Q 008282 161 VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 161 v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~ 240 (571)
-.+||.+++|++.. +..+|++.|-+|.||||+...++..+++++ +|++|++. .+..|.+..++++|++
T Consensus 78 g~~EldRVLGGG~V-------~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE----ES~~QiklRA~RL~~~ 145 (456)
T COG1066 78 GIEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE----ESLQQIKLRADRLGLP 145 (456)
T ss_pred ChHHHHhhhcCCcc-------cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC----cCHHHHHHHHHHhCCC
Confidence 45789999998765 346899999999999999999999999998 99999976 5567888888888875
Q ss_pred eecC--CCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 008282 241 VYTA--GTEVKPSQIAKQGLEEAKKKNVDVVIVDTA 274 (571)
Q Consensus 241 v~~~--~~~~~p~~v~~~~l~~~~~~~~DvIIIDTp 274 (571)
.... -.+.+.. +.+..+...++|++|||+-
T Consensus 146 ~~~l~l~aEt~~e----~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 146 TNNLYLLAETNLE----DIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred ccceEEehhcCHH----HHHHHHHhcCCCEEEEecc
Confidence 4211 1122322 3344445578999999973
No 141
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.38 E-value=5.4e-06 Score=81.88 Aligned_cols=53 Identities=34% Similarity=0.450 Sum_probs=44.3
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
..|.++++++.. +..++.++|++|+||||++..+|..++.+|.+|+++++|..
T Consensus 6 ~~LD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 6 KGLDELLGGGVE-------RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred hHHHHHhcCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 356777765432 35799999999999999999999999989999999999743
No 142
>PRK15494 era GTPase Era; Provisional
Probab=98.34 E-value=1.3e-06 Score=92.66 Aligned_cols=119 Identities=17% Similarity=0.274 Sum_probs=63.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|.+||||||++..|. |.++..+.-- +.. +.....+ ++ .
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~k---~~t-----Tr~~~~~--~~-------------------~ 96 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII------GEKLSIVTPK---VQT-----TRSIITG--II-------------------T 96 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh------CCceeeccCC---CCC-----ccCcEEE--EE-------------------E
Confidence 3478999999999999998875 5566543321 111 0000001 11 0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHH--HHhhhCCceEEEEEeCcch-HHH-HHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTG-QEA-AALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~--i~~~~~pd~vlLVvda~~g-q~a-~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
.+++.++|+||||.......+...+.. +......|.+++|+|+..+ .+. ...+......-...-+|+||+|...
T Consensus 97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 146689999999985322222222111 1122346888999998543 222 1122222211112347899999643
No 143
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.34 E-value=9.7e-06 Score=81.14 Aligned_cols=107 Identities=22% Similarity=0.370 Sum_probs=65.3
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhcc-----
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV----- 237 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~----- 237 (571)
+.|.++++++.. ++.+++++|++|+||||++..++....++|.+|++++++-......+++..++-..
T Consensus 12 ~~LD~~l~gG~~-------~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~ 84 (234)
T PRK06067 12 EELDRKLGGGIP-------FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFL 84 (234)
T ss_pred HHHHHhhCCCCc-------CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHh
Confidence 457777776532 45799999999999999999999887788999999999743223333332221000
Q ss_pred --CCceecCC------CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 008282 238 --GVPVYTAG------TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 238 --gv~v~~~~------~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~ 276 (571)
.+.++... ...+..+.+....+.+...++++++||.+..
T Consensus 85 ~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 85 WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 01111110 0111223333333344435889999999874
No 144
>PRK13351 elongation factor G; Reviewed
Probab=98.32 E-value=2.1e-05 Score=91.10 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe-----ccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 256 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd-----~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~ 256 (571)
..+.|+++|..|+||||++..|......- .+..-++ +| +.+. + ...++.+...
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~-~~~~~v~~~~~~~d-~~~~--e------~~r~~ti~~~------------ 64 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKI-HKMGEVEDGTTVTD-WMPQ--E------QERGITIESA------------ 64 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCc-cccccccCCcccCC-CCHH--H------HhcCCCcccc------------
Confidence 35789999999999999998887543210 0111011 01 1110 0 0111111100
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhh-hcCeeEEEEccCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNI-EIGITGAILTKLD 333 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~-~~~i~GVIlNKlD 333 (571)
...+.+.++.+.||||||.... ..+...... ..|.+++|+|+..+. ........... .++ .-+++||+|
T Consensus 65 -~~~~~~~~~~i~liDtPG~~df----~~~~~~~l~--~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D 136 (687)
T PRK13351 65 -ATSCDWDNHRINLIDTPGHIDF----TGEVERSLR--VLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMD 136 (687)
T ss_pred -eEEEEECCEEEEEEECCCcHHH----HHHHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCC
Confidence 0012246788999999997532 222222222 247889999996552 22222222221 233 347999999
Q ss_pred CCC-C-hhHHHHHHHHhCCCeE
Q 008282 334 GDS-R-GGAALSVKEVSGKPIK 353 (571)
Q Consensus 334 ~~~-~-~g~~lsi~~~~g~PI~ 353 (571)
... . ...+..+...++.++.
T Consensus 137 ~~~~~~~~~~~~i~~~l~~~~~ 158 (687)
T PRK13351 137 RVGADLFKVLEDIEERFGKRPL 158 (687)
T ss_pred CCCCCHHHHHHHHHHHHCCCeE
Confidence 542 2 3445566677777553
No 145
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.32 E-value=7.8e-06 Score=72.06 Aligned_cols=93 Identities=28% Similarity=0.306 Sum_probs=61.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+..++++|++|+||||++..||..+...++.+.+++++........+.. ....................+..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999988877778999998876543322211 0011111112334444555666665
Q ss_pred hCCCcEEEEeCCCCCcccH
Q 008282 263 KKNVDVVIVDTAGRLQIDK 281 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~ 281 (571)
...+++||||.+..+....
T Consensus 76 ~~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 76 KLKPDVLILDEITSLLDAE 94 (148)
T ss_pred hcCCCEEEEECCcccCCHH
Confidence 4557999999999886533
No 146
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.30 E-value=1.2e-06 Score=95.48 Aligned_cols=107 Identities=27% Similarity=0.412 Sum_probs=76.5
Q ss_pred HHHHH--HHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCc-cccc----ccC-CCC
Q 008282 112 EPMRD--IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV-SELV----FAK-SRP 183 (571)
Q Consensus 112 ~~l~e--i~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~-~~l~----~~~-~~~ 183 (571)
.++.. +.+.|+++||+++++.+|++.+++.+..... .......+...|.+.+.+.++... ..+. +.. .+|
T Consensus 178 ~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~--~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p 255 (475)
T PRK12337 178 VPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGD--RVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRP 255 (475)
T ss_pred CCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCC
Confidence 44555 8889999999999999999999988643211 122345677778888777665321 1111 222 358
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.+|+++|.+|+||||++.+||..+. .. .++.+|.+|.
T Consensus 256 ~vil~~G~~G~GKSt~a~~LA~~lg---~~-~ii~tD~iR~ 292 (475)
T PRK12337 256 LHVLIGGVSGVGKSVLASALAYRLG---IT-RIVSTDAVRE 292 (475)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---Cc-EEeehhHHHH
Confidence 9999999999999999999997663 32 3788898764
No 147
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.30 E-value=9.8e-06 Score=85.32 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=87.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec-------CCCCCCHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT-------AGTEVKPSQIAKQ 256 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~-------~~~~~~p~~v~~~ 256 (571)
.|.+++|.-|+||||+..+|... ..|.++++|-.|.-..+ +|.-.. . ..+..++. +....+-...+.+
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~-iD~~ll-~-~~~~~v~eL~~GCiCCs~~~~l~~~l~~ 79 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVS-VDDQLI-G-DRATQIKTLTNGCICCSRSNELEDALLD 79 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCcc-ccHHHH-h-CcCceEEEECCCEEEEccCchHHHHHHH
Confidence 48999999999999999998754 35899999988854332 222111 1 11122222 2222233333334
Q ss_pred HHHHHHh--CCCcEEEEeCCCCCcccHHHHHHH---HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEc
Q 008282 257 GLEEAKK--KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILT 330 (571)
Q Consensus 257 ~l~~~~~--~~~DvIIIDTpG~l~~d~~l~~eL---~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlN 330 (571)
.+..... ..+|+|||+|.|.... ..++..+ ..+...+.-+.++.|+|+............+..++.. +-||+|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p-~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivln 158 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADP-GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCH-HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEe
Confidence 3333221 1599999999998642 2333332 1222223346789999996543222111122222322 569999
Q ss_pred cCCCCCChhHHHHHHHHhC
Q 008282 331 KLDGDSRGGAALSVKEVSG 349 (571)
Q Consensus 331 KlD~~~~~g~~lsi~~~~g 349 (571)
|+|.......+.......+
T Consensus 159 K~Dl~~~~~~~~~~l~~ln 177 (318)
T PRK11537 159 KTDVAGEAEKLRERLARIN 177 (318)
T ss_pred ccccCCHHHHHHHHHHHhC
Confidence 9997654334444444443
No 148
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.28 E-value=2.4e-06 Score=80.74 Aligned_cols=44 Identities=39% Similarity=0.536 Sum_probs=39.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
+|.+|+|+|.+|+||||++..|...|..+|.+|.++|.|..|.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 36799999999999999999999999999999999999987754
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.28 E-value=2.2e-05 Score=74.08 Aligned_cols=112 Identities=24% Similarity=0.416 Sum_probs=66.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCC-----------------
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG----------------- 245 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~----------------- 245 (571)
+.-|+++|++||||||++.++|..|..+|++|.=+-+--.|.+ +...|..++...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g--------GkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG--------GKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC--------CeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 3468999999999999999999999999999875444322211 111111111100
Q ss_pred ----CCCCH-HHHHHHHHHHHHhCCCcEEEEeCCCCCcccH-HHHHHHHHHHhhhCCce-EEEEEeCc
Q 008282 246 ----TEVKP-SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK-AMMDELKDVKRVLNPTE-VLLVVDAM 306 (571)
Q Consensus 246 ----~~~~p-~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~-~l~~eL~~i~~~~~pd~-vlLVvda~ 306 (571)
-..+. .+++-.+++.+. +..|+||||--|-+.... .+...+ ..+++.+. ++.++.-.
T Consensus 77 GkY~V~v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~v---e~vl~~~kpliatlHrr 140 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAV---EEVLKSGKPLIATLHRR 140 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHH---HHHhcCCCcEEEEEecc
Confidence 01112 235566777665 568999999988876533 333333 33343333 55555544
No 150
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.25 E-value=1.9e-05 Score=80.64 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=36.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
+..+++++|++|+||||++..+|...+++|.+|++++.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3579999999999999999999998888899999999984
No 151
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.23 E-value=1.9e-06 Score=88.78 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc----hhHHHHHHHhhhccCCce---ecC------CCCCCH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR----PAAIDQLVILGEQVGVPV---YTA------GTEVKP 250 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R----p~a~dqL~~~~~~~gv~v---~~~------~~~~~p 250 (571)
++|.|+|.+||||||++.+|+..|+++| +|++|+.|... ++. |.... ...|.+. ++. ....+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~-Ds~~~--~~aGa~~v~~~s~~~~~~~~~~~~- 76 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGT-DTGRH--FDAGADVVYGLTDGEWVASGRDRS- 76 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCC-CcHHH--HHCCCcEEEEecCCeEEEEecCCC-
Confidence 4899999999999999999999999999 89999999853 331 11111 1122221 100 01112
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCc
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~ 278 (571)
+.+.+..+. .++|+||||+.+...
T Consensus 77 ---l~~~l~~l~-~~~D~vlVEG~k~~~ 100 (274)
T PRK14493 77 ---LDDALDDLA-PGMDYAVVEGFKDSR 100 (274)
T ss_pred ---HHHHHHhhC-cCCCEEEEECCCCCC
Confidence 233444443 579999999998864
No 152
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=2.2e-05 Score=72.15 Aligned_cols=93 Identities=22% Similarity=0.276 Sum_probs=57.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHh---hhccCCceecCCCCCC-HHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL---GEQVGVPVYTAGTEVK-PSQIAKQGLEE 260 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~---~~~~gv~v~~~~~~~~-p~~v~~~~l~~ 260 (571)
+++++|++|+||||++..++..+...|.+|++++++.........+... ....+..++....... ...........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 3688999999999999999999999999999999987654433332111 1111223332222222 22222222233
Q ss_pred HHhCCCcEEEEeCCCCC
Q 008282 261 AKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l 277 (571)
....+++++|||.+..+
T Consensus 81 ~~~~~~~~lviDe~~~~ 97 (165)
T cd01120 81 RERGGDDLIILDELTRL 97 (165)
T ss_pred HhCCCCEEEEEEcHHHH
Confidence 34467889999998754
No 153
>PHA02542 41 41 helicase; Provisional
Probab=98.21 E-value=0.00025 Score=78.64 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHHhhh-ccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 008282 126 VSLPVVRRFVQAVSEQAVG-VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 126 V~~~vv~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA 204 (571)
....+..+.++.+.++... .....++.. -...|.++++++. .+...+++.|.||+||||++.++|
T Consensus 146 ~~~~~~~~~~~~ie~~~~~~~~~~~gi~T-------G~~~LD~~t~gGl-------~~G~LiiIaarPgmGKTtfalniA 211 (473)
T PHA02542 146 FDSSVGHDYFEDYEERYDSYQSKANKIPF-------KLEILNKITKGGA-------ERKTLNVLLAGVNVGKSLGLCSLA 211 (473)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCCccCC-------CcHHHHHhccCCC-------CCCcEEEEEcCCCccHHHHHHHHH
Confidence 3355666666666554211 111223332 2356777773322 134588899999999999999999
Q ss_pred HHHHhcCCeEEEEeccCCchhH
Q 008282 205 NYLKKQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 205 ~~La~~G~kVlLVd~D~~Rp~a 226 (571)
..+++.|++|++++++.-....
T Consensus 212 ~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 212 ADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred HHHHhcCCcEEEEeccCCHHHH
Confidence 9888889999999999765433
No 154
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.20 E-value=2e-05 Score=77.14 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=67.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEE--EeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCML--VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlL--Vd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.|+++|..++||||++..|.....+.|..-.. ..+|.... + ...|+.+.... ..+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~---E------~~rg~Ti~~~~-------------~~~~ 61 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPE---E------KARGITINTAH-------------VEYE 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChh---h------hhcCccEEeee-------------eEec
Confidence 58999999999999999998776555432110 01121110 1 11122222110 0112
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee--EEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~--GVIlNKlD~~ 335 (571)
++++.+++|||||... +..++.. .+...|.+++|+|+..+ ......+ .+....++. -+++||+|..
T Consensus 62 ~~~~~i~~iDtPG~~~----~~~~~~~--~~~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 62 TANRHYAHVDCPGHAD----YIKNMIT--GAAQMDGAILVVSATDGPMPQTREHL-LLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCCeEEEEEECcCHHH----HHHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHH-HHHHHcCCCcEEEEEeCCCCC
Confidence 3577899999999742 3333322 22235889999999654 2222222 233344553 3678999974
No 155
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.19 E-value=9.7e-06 Score=90.05 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=70.9
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce-
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV- 241 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v- 241 (571)
++|.+++|++.. +..++++.|++|+||||++..++...+++|.+|+++..+-. .+|+...++.+|+++
T Consensus 250 ~~lD~~lgGG~~-------~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs----~~~i~~~~~~lg~~~~ 318 (484)
T TIGR02655 250 VRLDEMCGGGFF-------KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES----RAQLLRNAYSWGIDFE 318 (484)
T ss_pred HhHHHHhcCCcc-------CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC----HHHHHHHHHHcCCChH
Confidence 567777777543 45799999999999999999999999999999999998843 344544555555432
Q ss_pred ----------ecC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 008282 242 ----------YTA-GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAG 275 (571)
Q Consensus 242 ----------~~~-~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG 275 (571)
+.. .....+.+.+...++.+...++++|+||+-.
T Consensus 319 ~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 319 EMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 111 1123344555555555555678888888854
No 156
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.18 E-value=1.3e-05 Score=77.45 Aligned_cols=130 Identities=20% Similarity=0.218 Sum_probs=66.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.++|+++|+.|+||||++..|..........-..-..+.+ .....+-...+....+...... ..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~ti~~~~~~~~---------------~~ 66 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAF-LDKHPEERERGITIDLSFISFE---------------KN 66 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCH-HHSSHHHHHCTSSSSSEEEEEE---------------BT
T ss_pred EEEEEEECCCCCCcEeechhhhhhcccccccccccccccc-ccccchhhhccccccccccccc---------------cc
Confidence 4689999999999999999998665421111000000000 0000000001111111111110 01
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
..++.+.||||||.. ..+.++... ...+|.+++|+|+..+ ....+.+.. ....++ .-|++||+|..
T Consensus 67 ~~~~~i~~iDtPG~~----~f~~~~~~~--~~~~D~ailvVda~~g~~~~~~~~l~~-~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPGHE----DFIKEMIRG--LRQADIAILVVDANDGIQPQTEEHLKI-LRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESSSH----HHHHHHHHH--HTTSSEEEEEEETTTBSTHHHHHHHHH-HHHTT-SEEEEEETCTSS
T ss_pred ccccceeeccccccc----ceeecccce--ecccccceeeeeccccccccccccccc-ccccccceEEeeeeccch
Confidence 367889999999964 233443332 2246889999999654 222222222 222333 55899999976
No 157
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.18 E-value=2.3e-05 Score=78.68 Aligned_cols=108 Identities=25% Similarity=0.353 Sum_probs=68.6
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhcc-----
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV----- 237 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~----- 237 (571)
+.|.+.+++... +..+++++|++|+||||++.+++..+.++|.++++++++.......+++..++-..
T Consensus 11 ~~ld~~l~ggi~-------~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~ 83 (230)
T PRK08533 11 DELHKRLGGGIP-------AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLI 83 (230)
T ss_pred eeeehhhCCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhh
Confidence 456666665432 34599999999999999999999988889999999998876666555554332111
Q ss_pred --CCceecCCC-CC---CHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 008282 238 --GVPVYTAGT-EV---KPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 238 --gv~v~~~~~-~~---~p~~v~~~~l~~~~~~~~DvIIIDTpG~l 277 (571)
.+.++...+ .. +....+...+......+.++++||.+...
T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 84 SGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred cCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 111111100 11 11233344444444457899999998764
No 158
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.17 E-value=1.3e-05 Score=89.82 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=78.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
..+.|+++|+.|+||||++.+|..+...- .+..-|+.+. .+....|.. ..-...|+.+.... ..
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~~-~~E~~rgisi~~~~-------------~~ 74 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDWM-EMEKQRGISITTSV-------------MQ 74 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCCC-HHHHhcCCcEEEEE-------------EE
Confidence 45789999999999999999886542110 1111222110 000000000 00111233222110 01
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCCC-C
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDS-R 337 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~~-~ 337 (571)
+.++++.+.|+||||.... ..+..... ...|.+++|+|+..+ +.....+.......++ .-+++||+|... .
T Consensus 75 ~~~~~~~inliDTPG~~df----~~~~~~~l--~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHEDF----SEDTYRTL--TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred EeeCCeEEEEEECCChhhH----HHHHHHHH--HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCC
Confidence 1246789999999997432 22222211 235889999999755 2222222222222233 457899999642 3
Q ss_pred hh-HHHHHHHHhCCCeE----EEecCCC
Q 008282 338 GG-AALSVKEVSGKPIK----LVGRGER 360 (571)
Q Consensus 338 ~g-~~lsi~~~~g~PI~----fig~Ge~ 360 (571)
.. .+..+...++.++. +++.+..
T Consensus 149 ~~~ll~~i~~~l~~~~~~~~~PIg~~~~ 176 (527)
T TIGR00503 149 PLELLDEVENELKINCAPITWPIGCGKL 176 (527)
T ss_pred HHHHHHHHHHHhCCCCccEEEEecCCCc
Confidence 33 33445566665432 4555443
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.17 E-value=1.2e-05 Score=76.15 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=65.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~ 265 (571)
|+++|.+|+||||++..|.......++...+.+........ +. ..++.+... ...+...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~-------------~~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-ER------ERGITIKSG-------------VATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-HH------HcCCCeecc-------------eEEEeeCC
Confidence 78999999999999999886544334433333322211111 11 011111100 00011236
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
++++||||||........... ...++.+++|+|+..+. ............-...-+++||+|...
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRG------LSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHH------HHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 789999999965322221111 12458899999986542 222222222221122458999999653
No 160
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.16 E-value=7.4e-06 Score=85.12 Aligned_cols=101 Identities=25% Similarity=0.397 Sum_probs=77.1
Q ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCccc-ccc-----cCCCCEEEEEEc
Q 008282 117 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVF-----AKSRPTVILLAG 190 (571)
Q Consensus 117 i~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~-l~~-----~~~~~~VI~ivG 190 (571)
|.+.|..+|+++.++-++...+.+.+..+.. .....+.+.++|.+.|.+..++.... +.+ ....|.+|+++|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~--~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEGI--KEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcCC--EEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 6678999999999999999988888766532 23456778889999998876554321 211 224688999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 191 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 191 ~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++||||||+|.+||..| |... ++.+|.+|
T Consensus 100 ~sgsGKStlA~~La~~l---~~~~-vi~~D~~r 128 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIRS-VIGTDSIR 128 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCCE-EEechHHH
Confidence 99999999999999888 5554 78899887
No 161
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.16 E-value=1.8e-05 Score=85.10 Aligned_cols=99 Identities=26% Similarity=0.448 Sum_probs=66.6
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
.+|.+++|++.. +..++++.|.+|+||||++..+|..+++.|.+|++++.+-. .+|+...+..+++..-
T Consensus 69 ~eLD~vLgGGi~-------~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 69 EELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTE 137 (372)
T ss_pred HHHHHhhcCCcc-------CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcc
Confidence 578888887543 35689999999999999999999999998999999998632 3455545555554321
Q ss_pred c--CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 008282 243 T--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 243 ~--~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~ 276 (571)
. .....+..+ .++.+...++++||||.--.
T Consensus 138 ~l~l~~e~~le~----I~~~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 138 NLYLLAETNLED----ILASIEELKPDLVIIDSIQT 169 (372)
T ss_pred cEEEEccCcHHH----HHHHHHhcCCcEEEEcchHH
Confidence 1 001122222 22333346889999998643
No 162
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=2.7e-05 Score=84.13 Aligned_cols=117 Identities=21% Similarity=0.362 Sum_probs=75.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.+|+++|.+.|||||+-..|+ |.++++|+ |. |+...+ ++| ..++|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~-D~--pGvTRD----------r~y----------------~~~~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVS-DT--PGVTRD----------RIY----------------GDAEW 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEee-cC--CCCccC----------Ccc----------------ceeEE
Confidence 479999999999999999998 88998877 21 221000 111 11235
Q ss_pred CCCcEEEEeCCCCCccc-HHHHHHH--HHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQID-KAMMDEL--KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d-~~l~~eL--~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.+..+.+|||+|.-..+ +.+...+ +....+-..|.+++|+|+..| .+-..++..+...-...-+|+||+|..
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 67889999999998655 3344444 222223346889999999665 222233444443324466899999976
No 163
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.15 E-value=2.9e-05 Score=81.73 Aligned_cols=101 Identities=23% Similarity=0.362 Sum_probs=65.9
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v 241 (571)
..|..++| ++.. +.+++.+.|++|+||||++..++...+++|.+|++||+.- ..++ .++...|++.
T Consensus 41 ~~LD~~Lg~GGlp-------~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~----~~~~--~~a~~lGvd~ 107 (321)
T TIGR02012 41 LSLDLALGVGGLP-------RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH----ALDP--VYARKLGVDI 107 (321)
T ss_pred HHHHHHhcCCCCc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc----hhHH--HHHHHcCCCH
Confidence 46777777 5432 3579999999999999999999999999999999999862 1222 1344555531
Q ss_pred ---ecCCCCCCHHHHHHHHHHH-HHhCCCcEEEEeCCCCCc
Q 008282 242 ---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 242 ---~~~~~~~~p~~v~~~~l~~-~~~~~~DvIIIDTpG~l~ 278 (571)
+...+ ....+.+ ..++. ++...+++|+||+...+.
T Consensus 108 ~~l~v~~p-~~~eq~l-~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 DNLLVSQP-DTGEQAL-EIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHeEEecC-CCHHHHH-HHHHHHhhccCCcEEEEcchhhhc
Confidence 11111 1222222 22222 334679999999987653
No 164
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.15 E-value=5.1e-05 Score=76.36 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=44.0
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.|.++++++.. +..++++.|++|+||||++..++...+++|.+|++|+++-.
T Consensus 8 ~~LD~~l~GG~~-------~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 8 PGMDEILHGGIP-------ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred HhHHHHhcCCCc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 456777776543 36799999999999999999999887788999999999854
No 165
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.15 E-value=1.7e-05 Score=75.88 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++++.|++|+|||+++.+++...+++|.+|++++++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 368899999999999999999999999999999987543
No 166
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.14 E-value=1.3e-05 Score=76.51 Aligned_cols=44 Identities=34% Similarity=0.591 Sum_probs=39.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
+++.+|+|+|.+|+||||++..|+..+...|.++.+++.|.+|.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 35679999999999999999999999998899999999997763
No 167
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.11 E-value=6.2e-05 Score=72.89 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=37.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhh-hhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFN-IEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~-~~~~i~GVIlNKlD~~ 335 (571)
+++.+.|+||||.... ........ ...+.+++|+|+..+ ........... ...+ .-+++||+|..
T Consensus 63 ~~~~~~l~DtpG~~~~----~~~~~~~~--~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~ 130 (194)
T cd01891 63 KDTKINIVDTPGHADF----GGEVERVL--SMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP 130 (194)
T ss_pred CCEEEEEEECCCcHHH----HHHHHHHH--HhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 5678999999996432 22222222 235888999998653 11112222221 2233 45789999964
No 168
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=98.07 E-value=0.00023 Score=74.92 Aligned_cols=139 Identities=18% Similarity=0.212 Sum_probs=82.1
Q ss_pred HCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHH---------HHHHHHHHHhcCCcccccccCCCCEEEEEEcCCC
Q 008282 123 EADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVK---------IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQG 193 (571)
Q Consensus 123 ~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~---------~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~G 193 (571)
..+++...+.++++.+.+.... +.....++.+ .-...|.++||++.. ...++-++|++|
T Consensus 39 ~~gls~~~~~~i~~~~~~~~~~-----~~~ta~~~~~~~~~~~~isTG~~~LD~lLgGGi~-------~G~iteI~G~~G 106 (313)
T TIGR02238 39 IKGLSEAKVDKIKEAASKIINP-----GFITAFEISQKRKKVLKITTGSQALDGILGGGIE-------SMSITEVFGEFR 106 (313)
T ss_pred hcCCCHHHHHHHHHHHHhhhcc-----cCccHHHHHHhhccCceeCCCCHHHHHHhCCCCc-------CCeEEEEECCCC
Confidence 4888888888888877665321 1112211111 112467777877543 357999999999
Q ss_pred CcHHHHHHHHHHHHH------hcCCeEEEEeccC-CchhHHHHHHHhhhccCCce-------ecCCCCCCHHH---HHHH
Q 008282 194 VGKTTVSAKLANYLK------KQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPV-------YTAGTEVKPSQ---IAKQ 256 (571)
Q Consensus 194 vGKTTtaakLA~~La------~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~v-------~~~~~~~~p~~---v~~~ 256 (571)
+|||+++..||.... ..|.+|++||+.- |+|.-+.+ .++..+++. +... ..+..+ .+..
T Consensus 107 sGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~---~a~~~g~d~~~~l~~i~~~~-~~~~e~~~~~l~~ 182 (313)
T TIGR02238 107 CGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA---IAERFGVDPDAVLDNILYAR-AYTSEHQMELLDY 182 (313)
T ss_pred CCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH---HHHHcCCChHHhcCcEEEec-CCCHHHHHHHHHH
Confidence 999999999986443 1357999999864 67765444 334443321 1111 112222 2222
Q ss_pred HHHHHHhCCCcEEEEeCCCCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l 277 (571)
....+...++++||||+-..+
T Consensus 183 l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 183 LAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHhhccCCCEEEEEcchHh
Confidence 222333457899999987644
No 169
>PRK12740 elongation factor G; Reviewed
Probab=98.07 E-value=6.2e-05 Score=86.86 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=48.5
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH-HHHHHHHHhhhhcCe-eEEEEccCCCCC-Ch-
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI-TGAILTKLDGDS-RG- 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i-~GVIlNKlD~~~-~~- 338 (571)
+.+++++||||||..... .+..... ...|.+++|+|+..+. ........+....++ .-+|+||+|... ..
T Consensus 57 ~~~~~i~liDtPG~~~~~----~~~~~~l--~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~ 130 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFT----GEVERAL--RVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFF 130 (668)
T ss_pred ECCEEEEEEECCCcHHHH----HHHHHHH--HHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHH
Confidence 478999999999975322 2222221 2358899999996552 111112222222333 347999999643 22
Q ss_pred hHHHHHHHHhCCCeE
Q 008282 339 GAALSVKEVSGKPIK 353 (571)
Q Consensus 339 g~~lsi~~~~g~PI~ 353 (571)
.....+.+.++.|+.
T Consensus 131 ~~~~~l~~~l~~~~~ 145 (668)
T PRK12740 131 RVLAQLQEKLGAPVV 145 (668)
T ss_pred HHHHHHHHHHCCCce
Confidence 334456666777654
No 170
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.07 E-value=3.1e-05 Score=85.24 Aligned_cols=99 Identities=26% Similarity=0.504 Sum_probs=67.3
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce-
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV- 241 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v- 241 (571)
.+|.+++|++.. +..++++.|.+|+||||++..+|..++++|.+|++++++- ..+|+...++.+|+..
T Consensus 67 ~~LD~~LgGGi~-------~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 67 GELDRVLGGGLV-------PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERLGLPSD 135 (446)
T ss_pred HHHHHHhcCCcc-------CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHcCCChh
Confidence 578888887543 3568999999999999999999999988899999999863 2345544455555421
Q ss_pred --ecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 008282 242 --YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 242 --~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l 277 (571)
+.. ...+.. ..++.+...++++||||....+
T Consensus 136 ~l~~~-~e~~l~----~i~~~i~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 136 NLYLL-AETNLE----AILATIEEEKPDLVVIDSIQTM 168 (446)
T ss_pred cEEEe-CCCCHH----HHHHHHHhhCCCEEEEechhhh
Confidence 111 112222 2233334467899999996543
No 171
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.05 E-value=5.7e-05 Score=79.58 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=64.6
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCc
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~ 240 (571)
..|..++| ++.+ +.+++.+.|++|+||||++..++...++.|.+|++||+.- +.+. ++...|++
T Consensus 41 ~~LD~~Lg~GGlp-------~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~-------~a~~lGvd 106 (325)
T cd00983 41 LSLDIALGIGGYP-------KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV-------YAKKLGVD 106 (325)
T ss_pred HHHHHHhcCCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH-------HHHHcCCC
Confidence 46777777 5432 3579999999999999999999999999999999999852 2222 33344443
Q ss_pred e---ecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 008282 241 V---YTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 241 v---~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l 277 (571)
+ +... ..+..+.+...-..++...+++||||+...+
T Consensus 107 ~~~l~v~~-p~~~eq~l~i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 107 LDNLLISQ-PDTGEQALEIADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHheecC-CCCHHHHHHHHHHHHhccCCCEEEEcchHhh
Confidence 1 1111 1223333222222224467999999997654
No 172
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.04 E-value=0.00033 Score=74.51 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHH-----HHHHHhhCCCCCChhhhHH-HHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCCh
Q 008282 80 VRAEMFGQLTSGLE-----AAWNKLKGEETLTKENIVE-PMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRP 153 (571)
Q Consensus 80 ~~~~m~~~l~~~l~-----~~~~~l~~~~~l~~~~i~~-~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~ 153 (571)
.-+.+|+.|.+--. ..+++|...+.-|-+++-. .-.+| ....|++..-+.++++..++.... +...
T Consensus 23 ~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L---~~~~g~s~~~~~ki~~~a~~~~~~-----~~~t 94 (344)
T PLN03187 23 EEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNL---TGIKGLSEAKVDKICEAAEKLLNQ-----GFIT 94 (344)
T ss_pred hhhhcccCHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHH---HHhcCCCHHHHHHHHHHHHHhhcc-----cCCc
Confidence 33445555443322 4566776666666555422 11222 235899999999999887765421 2222
Q ss_pred hhHHHH---------HHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh---c---CCeEEEEe
Q 008282 154 DQQLVK---------IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK---Q---GKSCMLVA 218 (571)
Q Consensus 154 ~~~~~~---------~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~---~---G~kVlLVd 218 (571)
...+.. .-...|.++|+++.. ...++-|+|++|+|||+++..||...+. . +.+|++||
T Consensus 95 a~~~~~~~~~~~~isTG~~~LD~lLgGGi~-------~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 95 GSDALLKRKSVVRITTGSQALDELLGGGIE-------TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HHHHHhhhccCceecCCcHhHHhhcCCCCC-------CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 222211 112467777776543 3578999999999999999999865431 2 36999999
Q ss_pred cc-CCchhHHHHHHHhhhccCCc-------eecCCCCCCHHHH---HHHHHHHHHhCCCcEEEEeCCCCC
Q 008282 219 GD-VYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQI---AKQGLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 219 ~D-~~Rp~a~dqL~~~~~~~gv~-------v~~~~~~~~p~~v---~~~~l~~~~~~~~DvIIIDTpG~l 277 (571)
+. +|+|.-+.+. ++..|+. ++.. ...+..+. +......+...++++||||+-..+
T Consensus 168 TE~tF~peRl~~i---a~~~g~d~~~~l~~I~~~-~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 168 TEGTFRPDRIVPI---AERFGMDADAVLDNIIYA-RAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred cCCCCCHHHHHHH---HHHcCCChhhhcCeEEEe-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 85 4787654443 3333332 1111 11233222 222222233457889999986543
No 173
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.04 E-value=6.8e-05 Score=87.57 Aligned_cols=136 Identities=24% Similarity=0.235 Sum_probs=76.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.++|||||+..+|. |.+.- + +...|+.+...... ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-v----------------gn~pGvTve~k~g~-------------~~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-V----------------GNWAGVTVERKEGQ-------------FST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-c----------------CCCCCceEeeEEEE-------------EEc
Confidence 369999999999999998884 32221 0 11112222100000 112
Q ss_pred CCCcEEEEeCCCCCcccH----HHHHHHH--HHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDK----AMMDELK--DVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~----~l~~eL~--~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
.++++.++||||...... ...+|.. .....-.+|.+++|+|++..+.......... +.++ .-+++||+|...
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~-e~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLL-ELGIPCIVALNMLDIAE 126 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHH-HcCCCEEEEEEchhhhh
Confidence 567899999999754321 1112221 1111125788999999976543333222222 2333 458999999753
Q ss_pred Chh---HHHHHHHHhCCCeEEEe
Q 008282 337 RGG---AALSVKEVSGKPIKLVG 356 (571)
Q Consensus 337 ~~g---~~lsi~~~~g~PI~fig 356 (571)
+.+ ....+.+.+|.|+..+.
T Consensus 127 ~~~i~id~~~L~~~LG~pVvpiS 149 (772)
T PRK09554 127 KQNIRIDIDALSARLGCPVIPLV 149 (772)
T ss_pred ccCcHHHHHHHHHHhCCCEEEEE
Confidence 322 33456677899986544
No 174
>PRK04296 thymidine kinase; Provisional
Probab=98.03 E-value=2.1e-05 Score=76.61 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec--cCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG--DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~--D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+++++|+.|+||||.+..++..+..+|++|+++.. |. |.+. .......|+++... ......+..... ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~~~~~~~~-~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSDTDIFELI-EE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCChHHHHHHH-Hh-
Confidence 588999999999999999999999989999998843 43 2221 12344445443221 011223333222 22
Q ss_pred HhCCCcEEEEeCCCCCc
Q 008282 262 KKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~ 278 (571)
...++|+|+||-+..++
T Consensus 75 ~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred hCCCCCEEEEEccccCC
Confidence 33589999999998764
No 175
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.03 E-value=0.00013 Score=71.04 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=63.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+|+||||+...|. |.++.....+ .++. .. ....+ .....
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~--~~~~-------T~--~~~~~-----------------~~~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLS--ASSV-------TK--TCQKE-----------------SAVWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccC--CCCc-------cc--cccee-----------------eEEEC
Confidence 48899999999999998886 4444311111 0000 00 00000 00125
Q ss_pred CCcEEEEeCCCCCccc---HHHHHHHHHHHhh--hCCceEEEEEeCcc-hHHHHHHHHH----hhhhc-CeeEEEEccCC
Q 008282 265 NVDVVIVDTAGRLQID---KAMMDELKDVKRV--LNPTEVLLVVDAMT-GQEAAALVTT----FNIEI-GITGAILTKLD 333 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d---~~l~~eL~~i~~~--~~pd~vlLVvda~~-gq~a~~~~~~----f~~~~-~i~GVIlNKlD 333 (571)
+..++||||||....+ .....++...... -.++.+++|+++.. .++....+.. |.+.+ ...-+|+|+.|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 6789999999987542 2333444333222 23577899988742 2222233332 33222 33558899998
Q ss_pred CC
Q 008282 334 GD 335 (571)
Q Consensus 334 ~~ 335 (571)
.-
T Consensus 128 ~l 129 (196)
T cd01852 128 DL 129 (196)
T ss_pred cc
Confidence 54
No 176
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.01 E-value=2.7e-05 Score=77.39 Aligned_cols=53 Identities=28% Similarity=0.448 Sum_probs=41.4
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCc
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYR 223 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~R 223 (571)
.|.++++++.. ++.+++++|++|+|||+++..++...+++ |.+|++|+++.-.
T Consensus 7 ~LD~~l~GGip-------~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 7 GLDELLGGGIP-------KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp THHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred hHHHhhcCCCC-------CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 46677766543 35699999999999999999999988888 9999999987543
No 177
>PRK09354 recA recombinase A; Provisional
Probab=98.00 E-value=4.9e-05 Score=80.69 Aligned_cols=100 Identities=20% Similarity=0.350 Sum_probs=66.2
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCc
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~ 240 (571)
..|..+|| ++.. ..+++.+.|++|+||||++..++...++.|.++++||+.- +.+ .++...|++
T Consensus 46 ~~LD~~LG~GGip-------~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~-------~~a~~lGvd 111 (349)
T PRK09354 46 LALDIALGIGGLP-------RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP-------VYAKKLGVD 111 (349)
T ss_pred HHHHHHhcCCCCc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH-------HHHHHcCCC
Confidence 46777787 5432 3579999999999999999999999888999999999862 222 234455554
Q ss_pred e---ecCCCCCCHHHHHHHHHHH-HHhCCCcEEEEeCCCCCc
Q 008282 241 V---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 241 v---~~~~~~~~p~~v~~~~l~~-~~~~~~DvIIIDTpG~l~ 278 (571)
+ +...+ ....+.+ ..++. ++...+++|+||+...+.
T Consensus 112 ld~lli~qp-~~~Eq~l-~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 112 IDNLLVSQP-DTGEQAL-EIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred HHHeEEecC-CCHHHHH-HHHHHHhhcCCCCEEEEeChhhhc
Confidence 2 11111 1223332 22222 334679999999977553
No 178
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.00 E-value=0.00025 Score=72.34 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=66.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCceecCC--CCCCHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG--TEVKPSQIAKQGLE 259 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~--~~~~p~~v~~~~l~ 259 (571)
..+++++|++|+||||++..+|..++.+ |.+|++++++.-.......+. +...++++.... ...+. +.+..++.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 106 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL--GQYAGKRLHLPDTVFIYTL-EEFDAAFD 106 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH--HHHhCCCcccCCccccccH-HHHHHHHH
Confidence 4689999999999999999999998877 999999999763222222221 222344332211 11122 22334444
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
.+. ..-.+.++|.++.... ..+...+..+....+ .-++|+|.
T Consensus 107 ~~~-~~~~l~i~d~~~~~~~-~~i~~~i~~~~~~~~--~~~vvID~ 148 (271)
T cd01122 107 EFE-GTGRLFMYDSFGEYSM-DSVLEKVRYMAVSHG--IQHIIIDN 148 (271)
T ss_pred Hhc-CCCcEEEEcCCCccCH-HHHHHHHHHHHhcCC--ceEEEECC
Confidence 443 2334777887765432 334444443332222 33788886
No 179
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.00 E-value=4.9e-05 Score=83.76 Aligned_cols=99 Identities=24% Similarity=0.415 Sum_probs=66.9
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
++|.++++++.. +..++++.|.+|+||||++..+|..++++|.+|++++.+-. .+|+...+...++..-
T Consensus 81 ~~LD~vLgGGi~-------~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 81 GELDRVLGGGIV-------PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEP 149 (454)
T ss_pred HHHHHHhcCCcc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChH
Confidence 578888887543 35789999999999999999999999988999999998632 3455444555554311
Q ss_pred c--CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 008282 243 T--AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 243 ~--~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~ 276 (571)
. .-...+..++ +..+...++++|+||.-..
T Consensus 150 ~l~~~~e~~~~~I----~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 150 NLYVLSETNWEQI----CANIEEENPQACVIDSIQT 181 (454)
T ss_pred HeEEcCCCCHHHH----HHHHHhcCCcEEEEecchh
Confidence 0 1112233222 2333446899999997543
No 180
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.99 E-value=7.8e-05 Score=74.06 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=42.5
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.|.++++++.. +..++++.|.+|+|||+++..++....++|.+|++++++-
T Consensus 4 ~LD~~l~gGi~-------~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 4 GLDEMLGGGFP-------EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred hhHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 46677765432 3578999999999999999999998888899999999875
No 181
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.97 E-value=7.2e-05 Score=68.41 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHH-H-HhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKD-V-KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDSR 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~-i-~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~~~ 337 (571)
.++++.|+||||...........+.. . ......+.+++|+|+..+ .........+...-...-+|+||+|....
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 45789999999986543212121111 1 112235788999998543 11112222222111224689999997654
No 182
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=9.6e-05 Score=79.27 Aligned_cols=155 Identities=25% Similarity=0.329 Sum_probs=93.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH---HhcCCeEEEEecc-CCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL---KKQGKSCMLVAGD-VYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L---a~~G~kVlLVd~D-~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~ 257 (571)
+.++.+|...+-+||||++-+|..+- ...| -|.+- ..+-+.-|++ ..-+.-||.+.++--
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG----~Vk~rk~~~~a~SDWM-~iEkqRGISVtsSVM----------- 74 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG----TVKGRKSGKHAKSDWM-EIEKQRGISVTSSVM----------- 74 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcc----eeeeccCCcccccHHH-HHHHhcCceEEeeEE-----------
Confidence 35689999999999999999997642 2222 01110 1122222333 345566777654311
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH--HHHHHHHh-hhhcCeeEEEEccCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE--AAALVTTF-NIEIGITGAILTKLDG 334 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~--a~~~~~~f-~~~~~i~GVIlNKlD~ 334 (571)
.+...++-+.|+||||.-...++...-|.++ |.+++|+|+.-|-+ ......-- ...++| -.++||+|.
T Consensus 75 --qF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAv------DsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI-~TFiNKlDR 145 (528)
T COG4108 75 --QFDYADCLVNLLDTPGHEDFSEDTYRTLTAV------DSAVMVIDAAKGIEPQTLKLFEVCRLRDIPI-FTFINKLDR 145 (528)
T ss_pred --EeccCCeEEeccCCCCccccchhHHHHHHhh------heeeEEEecccCccHHHHHHHHHHhhcCCce-EEEeecccc
Confidence 1123677899999999887777766666544 78899999976622 22222111 112333 358899996
Q ss_pred CCC--hhHHHHHHHHhCC---CeE-EEecCCCC
Q 008282 335 DSR--GGAALSVKEVSGK---PIK-LVGRGERM 361 (571)
Q Consensus 335 ~~~--~g~~lsi~~~~g~---PI~-fig~Ge~v 361 (571)
..+ ...+-.+.+.+++ |+. +||.|...
T Consensus 146 ~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F 178 (528)
T COG4108 146 EGRDPLELLDEIEEELGIQCAPITWPIGMGKDF 178 (528)
T ss_pred ccCChHHHHHHHHHHhCcceecccccccCCccc
Confidence 644 4455567777775 544 67777665
No 183
>PRK04328 hypothetical protein; Provisional
Probab=97.96 E-value=7.5e-05 Score=75.88 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.|.++++++.. +..++++.|++|+|||+++..++....++|.++++|+++-.
T Consensus 10 ~~LD~lL~GGip-------~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 10 PGMDEILYGGIP-------ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred hhHHHHhcCCCc-------CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 357777776532 35799999999999999999999887788999999998753
No 184
>PTZ00035 Rad51 protein; Provisional
Probab=97.95 E-value=0.00063 Score=72.29 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=72.7
Q ss_pred HHHHhhCCCCCChhhhHHH-HHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHH---------HHHHH
Q 008282 95 AWNKLKGEETLTKENIVEP-MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVK---------IVRDE 164 (571)
Q Consensus 95 ~~~~l~~~~~l~~~~i~~~-l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~---------~v~~e 164 (571)
.+++|...+.-|-+++-.. -.+| ....|++...+.++++..++.... +......+.+ .-...
T Consensus 35 ~~~kL~~~g~~t~~~~~~~~~~~L---~~~~gis~~~~~~i~~~~~~~~~~-----~~~ta~~~~~~~~~~~~isTG~~~ 106 (337)
T PTZ00035 35 DIKKLKEAGICTVESVAYATKKDL---CNIKGISEAKVEKIKEAASKLVPM-----GFISATEYLEARKNIIRITTGSTQ 106 (337)
T ss_pred HHHHHHHcCCCcHHHHHhCCHHHH---HHhhCCCHHHHHHHHHHHHHhccc-----CCCCHHHHHHhhccCccccCCcHH
Confidence 3445555554444443221 1122 234888888888888877665321 1112221111 12246
Q ss_pred HHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh------cCCeEEEEecc-CCchhHHHHH
Q 008282 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGD-VYRPAAIDQL 230 (571)
Q Consensus 165 L~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~------~G~kVlLVd~D-~~Rp~a~dqL 230 (571)
|.++|+++.. ...++.++|++|+||||++..|+..... .+.+|++||+. +|+|..+.++
T Consensus 107 LD~lLgGGi~-------~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i 172 (337)
T PTZ00035 107 LDKLLGGGIE-------TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI 172 (337)
T ss_pred HHHHhCCCCC-------CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH
Confidence 7777776543 3579999999999999999999866542 45689999985 4677654443
No 185
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.0002 Score=73.99 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=72.5
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCcee
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
.|.+++|++.+ ..+|+=|.|+.|+||||+|..++....+.|.++++||+.- ++|....++.... ..++.+.
T Consensus 48 ~LD~~LGGGl~-------~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~ 119 (279)
T COG0468 48 ALDEALGGGLP-------RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVS 119 (279)
T ss_pred hHHHHhcCCcc-------cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-hcceeEe
Confidence 56677776543 4578999999999999999999999999999999999864 8898887765331 2334444
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCc
Q 008282 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 243 ~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~ 278 (571)
.........+++....... .+.+|+|+||+...+.
T Consensus 120 ~~~~~e~q~~i~~~~~~~~-~~~i~LvVVDSvaa~~ 154 (279)
T COG0468 120 QPDTGEQQLEIAEKLARSG-AEKIDLLVVDSVAALV 154 (279)
T ss_pred cCCCHHHHHHHHHHHHHhc-cCCCCEEEEecCcccc
Confidence 3322222223333333332 2369999999977653
No 186
>PRK08760 replicative DNA helicase; Provisional
Probab=97.94 E-value=0.0019 Score=71.87 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=83.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHH--HHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~--v~~~~ 257 (571)
+..++++.|.+|+||||++.++|...+. .|++|++++.+.-.......+. +...+++...... ..+..+ .+..+
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~--a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLI--SSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHH--HhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 3568999999999999999999998874 5999999999876544433332 2223343322111 122222 23345
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC---c--ch------H---HHHHHHHHhhhhcC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---M--TG------Q---EAAALVTTFNIEIG 323 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda---~--~g------q---~a~~~~~~f~~~~~ 323 (571)
+..+. +..+.|-|+|+.. . ..+...+..+....+ .-++|+|. . .+ + .+.+.++.+...++
T Consensus 306 ~~~l~--~~~l~I~d~~~~t-~-~~I~~~~r~l~~~~~--~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 379 (476)
T PRK08760 306 IKMLK--ETKIFIDDTPGVS-P-EVLRSKCRRLKREHD--LGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELN 379 (476)
T ss_pred HHHHh--cCCEEEeCCCCCC-H-HHHHHHHHHHHHhcC--CCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 55553 4566677776643 2 233333333433222 23667774 1 11 1 23344456777888
Q ss_pred eeEEEEccCCC
Q 008282 324 ITGAILTKLDG 334 (571)
Q Consensus 324 i~GVIlNKlD~ 334 (571)
+.-|++..+..
T Consensus 380 ipVi~lsQLnR 390 (476)
T PRK08760 380 VPVIALSQLNR 390 (476)
T ss_pred CEEEEeeccCc
Confidence 88888887753
No 187
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.93 E-value=0.00015 Score=71.80 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=41.6
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcC------CeEEEEeccC
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG------KSCMLVAGDV 221 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G------~kVlLVd~D~ 221 (571)
.+|.++++++.. ...++.++|++|+|||+++..+|......| .+|++++++-
T Consensus 6 ~~lD~~l~GG~~-------~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 6 KALDELLGGGIP-------TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred HHHHHHhCCCCc-------CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456677765432 356999999999999999999998887777 8999999863
No 188
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.91 E-value=0.0047 Score=67.43 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=67.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHH--HHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQGL 258 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~--v~~~~l 258 (571)
..++++.|.+|+|||+++.++|..++ ++|++|++++++.-.......+ .+...+++...... ..+..+ .+..++
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 46899999999999999999998887 6799999999986443333322 34445555432211 122222 233455
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
..+ .+..+.|-|+++. .. ..+...+..+.... +..-++|+|.
T Consensus 272 ~~l--~~~~l~i~d~~~~-t~-~~i~~~~r~~~~~~-~~~~lvvIDy 313 (421)
T TIGR03600 272 DRL--SEKDLYIDDTGGL-TV-AQIRSIARRIKRKK-GGLDLIVVDY 313 (421)
T ss_pred HHH--hcCCEEEECCCCC-CH-HHHHHHHHHHHHhc-CCCCEEEEec
Confidence 554 3456766666553 22 22223333332221 1223677775
No 189
>PRK05973 replicative DNA helicase; Provisional
Probab=97.91 E-value=0.00012 Score=73.99 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=39.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ 229 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dq 229 (571)
+..+++|.|.+|+||||++..+|...+++|++|++++++.......+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 346899999999999999999999888889999999998654333333
No 190
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.90 E-value=6.6e-05 Score=79.13 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=83.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHH--HHHHhhhccCCcee-------cCCCCCCHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID--QLVILGEQVGVPVY-------TAGTEVKPSQIAK 255 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~d--qL~~~~~~~gv~v~-------~~~~~~~p~~v~~ 255 (571)
|.+++|-=|+||||+..+|..... |+|+++|-.+. ..-.+| .+. ...+..++ .+.-..+......
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEf-GEvgID~~~~l---~~~~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEF-GEVGIDGGALL---SDTGEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecC-ccccccCCCcc---ccCCccEEEeCCceEEEeccchhHHHHH
Confidence 788999999999999988876555 89999887763 322233 111 11222222 2211223344444
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHH---HHHhhhCCceEEEEEeCcchHHHHH-HHHHhhhhcCe-eEEEEc
Q 008282 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK---DVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGI-TGAILT 330 (571)
Q Consensus 256 ~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~---~i~~~~~pd~vlLVvda~~gq~a~~-~~~~f~~~~~i-~GVIlN 330 (571)
.... . .+.+|+|||+|.|..+. ...+..+. .+...+.-+.++-|||+........ ....+..++.. +-||+|
T Consensus 77 ~L~~-~-~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlN 153 (323)
T COG0523 77 RLLR-R-RDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLN 153 (323)
T ss_pred HHHh-c-cCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEe
Confidence 4444 2 36699999999998653 22222221 1222233467899999954422222 33334444443 458999
Q ss_pred cCCCCCCh
Q 008282 331 KLDGDSRG 338 (571)
Q Consensus 331 KlD~~~~~ 338 (571)
|.|.....
T Consensus 154 K~Dlv~~~ 161 (323)
T COG0523 154 KTDLVDAE 161 (323)
T ss_pred cccCCCHH
Confidence 99976554
No 191
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.89 E-value=0.0062 Score=66.70 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=67.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHHH--HHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v--~~~~ 257 (571)
+...+++.|.+|+||||++.++|..++. .|++|++++++.-.......+ .+...+++...... .....+. +..+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~--~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRM--LSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 3568999999999999999999998775 699999999987654444433 23334454322211 1233322 3344
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
...+. +..+.|.|+++. .. ..+...+..+....+ .-++|+|.
T Consensus 272 ~~~l~--~~~l~i~d~~~~-~~-~~i~~~i~~~~~~~~--~~~vvID~ 313 (434)
T TIGR00665 272 AGKLS--EAPLYIDDTPGL-TI-TELRAKARRLKREHG--LGLIVIDY 313 (434)
T ss_pred HHHHh--cCCEEEECCCCC-CH-HHHHHHHHHHHHhcC--CCEEEEcc
Confidence 45543 345666666653 21 233333333433322 23677775
No 192
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.89 E-value=2.3e-05 Score=74.07 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
|+.++|+.|+||||++.+|+..|..+|++|++|..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 5789999999999999999999999999999998764
No 193
>PRK05595 replicative DNA helicase; Provisional
Probab=97.89 E-value=0.00081 Score=74.02 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=79.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCC-CCHHH--HHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQ--IAKQGL 258 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~-~~p~~--v~~~~l 258 (571)
..++++.|.+|+||||++.++|..++ ++|++|++++.+.-....... ..+...+++....... .+..+ .+.++.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R--~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~ 278 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK--LLCSEANVDMLRLRTGNLEDKDWENIARAS 278 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH--HHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 46888999999999999999998876 679999999998644333322 2344455654432211 22222 233444
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC---cc--h------HH---HHHHHHHhhhhcCe
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MT--G------QE---AAALVTTFNIEIGI 324 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda---~~--g------q~---a~~~~~~f~~~~~i 324 (571)
..+. ...+-|-|+++.. . ..+...+..+....+ .-++|||. .. . +. +.+.++.+..++++
T Consensus 279 ~~l~--~~~l~i~d~~~~t-~-~~i~~~~r~~~~~~~--~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i 352 (444)
T PRK05595 279 GPLA--AAKIFIDDTAGVS-V-MEMRSKCRRLKIEHG--IDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMEC 352 (444)
T ss_pred HHHh--cCCEEEECCCCCC-H-HHHHHHHHHHHHhcC--CCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 4442 3455556666642 2 233344444433222 22666774 11 1 11 12233455556666
Q ss_pred eEEEEccCC
Q 008282 325 TGAILTKLD 333 (571)
Q Consensus 325 ~GVIlNKlD 333 (571)
..+++..+.
T Consensus 353 ~vi~lsQLn 361 (444)
T PRK05595 353 PVIALSQLS 361 (444)
T ss_pred eEEEeeccC
Confidence 666666665
No 194
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.89 E-value=7.9e-05 Score=69.28 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.++++.|+||||..... .+.. ......+.+++|+|+..+ ......+.... ..++ .-+|+||+|..
T Consensus 48 ~~~~~~iiDtpG~~~~~-----~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 48 KIPGITFIDTPGHEAFT-----NMRA-RGASLTDIAILVVAADDGVMPQTIEAIKLAK-AANVPFIVALNKIDKP 115 (168)
T ss_pred CcceEEEEeCCCcHHHH-----HHHH-HHHhhcCEEEEEEECCCCccHHHHHHHHHHH-HcCCCEEEEEEceecc
Confidence 46889999999964221 1111 011235788999998653 22222222222 1222 45788999964
No 195
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.89 E-value=3.5e-05 Score=77.14 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=68.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---hhhccCCc----eecCCCCCCHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---LGEQVGVP----VYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---~~~~~gv~----v~~~~~~~~p~~v~~~~l 258 (571)
|+++|..|+||||++..|....-..|.-......|.++-.. +...+ ....+|.. +........ .. ...
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~-~~---~~~ 76 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHL-SE---SDI 76 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCcc-cc---ccc
Confidence 67789999999999999986444445555555555433211 00000 00011111 000000000 00 001
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHh-hhhcCeeEEEEccCCCC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 335 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f-~~~~~i~GVIlNKlD~~ 335 (571)
+.+...++.+.+|||||... ...++..-.....+|.+++|+|+..+ ......+... ...++ .-+|+||+|..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~----~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~ 151 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHER----YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLA 151 (224)
T ss_pred eeeeeCCcEEEEEECCCcHH----HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECcccc
Confidence 11223577899999999632 22222111111246888999998544 2222222211 11233 35899999964
No 196
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.88 E-value=0.00031 Score=70.28 Aligned_cols=145 Identities=18% Similarity=0.300 Sum_probs=79.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCH--HHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKP--SQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p--~~v~~~~ 257 (571)
+..+++++|++|+||||++.+++..++.+ |.+|++++++.-.......+ .+...+++...... .... ...+..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL--LASESGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 35699999999999999999999998887 99999999986443333332 12233443221111 1111 1112233
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc----h-------H---HHHHHHHHhhhhcC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----G-------Q---EAAALVTTFNIEIG 323 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~----g-------q---~a~~~~~~f~~~~~ 323 (571)
...+ ....+.+.|.++. . -..+...+..+....+ .-++|+|... + + .+...++.+....+
T Consensus 90 ~~~~--~~~~~~i~~~~~~-~-~~~l~~~i~~~~~~~~--~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~ 163 (242)
T cd00984 90 IGEL--KELPIYIDDSSSL-T-VSDIRSRARRLKKEHG--LGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELN 163 (242)
T ss_pred HHHH--hcCCEEEeCCCCC-C-HHHHHHHHHHHHHhcC--CCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3332 2345555555432 2 2233333333332222 2366666421 1 1 22334455666788
Q ss_pred eeEEEEccCCC
Q 008282 324 ITGAILTKLDG 334 (571)
Q Consensus 324 i~GVIlNKlD~ 334 (571)
+..++++.+..
T Consensus 164 ~~ii~~~q~~r 174 (242)
T cd00984 164 VPVIALSQLSR 174 (242)
T ss_pred CeEEEecccCh
Confidence 88888887753
No 197
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.87 E-value=0.0002 Score=71.26 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=42.7
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.|.++++++.. +..++++.|++|+||||++.+++....++|.+|++++++..
T Consensus 7 ~~LD~~l~GGi~-------~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 7 EGLDKLLEGGIP-------RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred hhHHHhhcCCCc-------CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 356677755432 35789999999999999999999877778999999998644
No 198
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.86 E-value=8.4e-05 Score=73.31 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhh-hhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~-~~~~i~GVIlNKlD~~ 335 (571)
..+.+.|+||||......... ......+.+++|+|+..+. .......... ...+ .-+|+||+|..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~------~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVA------AALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHH------HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccC
Confidence 357899999999754322111 1122358899999986542 2112222211 1222 45899999963
No 199
>PRK06526 transposase; Provisional
Probab=97.85 E-value=9.4e-05 Score=75.53 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=56.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+..++++|++|+|||+++..|+..+.++|++|.++++. ..++++.... . .... ...+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~~-~----------~~~~----~~~l~~l- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA----QWVARLAAAH-H----------AGRL----QAELVKL- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHHH-h----------cCcH----HHHHHHh-
Confidence 34689999999999999999999999999999865542 2233332110 0 0011 1223333
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDV 290 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i 290 (571)
.++|++|||-.|..+.+......+-.+
T Consensus 158 -~~~dlLIIDD~g~~~~~~~~~~~L~~l 184 (254)
T PRK06526 158 -GRYPLLIVDEVGYIPFEPEAANLFFQL 184 (254)
T ss_pred -ccCCEEEEcccccCCCCHHHHHHHHHH
Confidence 578999999999886655444434333
No 200
>PRK12736 elongation factor Tu; Reviewed
Probab=97.85 E-value=0.00035 Score=75.71 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE--eccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV--d~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
+...|+++|+.++||||++..|.......|..-... .+|... .++ .-|+.+-....
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~---~E~------~rg~T~~~~~~------------- 68 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAP---EEK------ERGITINTAHV------------- 68 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCH---HHH------hcCccEEEEee-------------
Confidence 456799999999999999999986655444322110 012111 011 11222211100
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee-E-EEEccCCCC
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT-G-AILTKLDGD 335 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~-G-VIlNKlD~~ 335 (571)
.+..++..++||||||.. .++..+ +..+...|.+++|+|+..+ ....+.+. +....++. . |++||+|..
T Consensus 69 ~~~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~~-~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHIL-LARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred EecCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHHH-HHHHcCCCEEEEEEEecCCc
Confidence 011256789999999943 333333 2222346889999999654 11222222 22344554 3 579999964
No 201
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.85 E-value=0.00021 Score=75.22 Aligned_cols=132 Identities=27% Similarity=0.392 Sum_probs=80.3
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEecc-CCchhH----HHHHHHhhhc--------------cCCceecC
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYRPAA----IDQLVILGEQ--------------VGVPVYTA 244 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D-~~Rp~a----~dqL~~~~~~--------------~gv~v~~~ 244 (571)
+|.++|. .|+|||+++..+|..|+.+|++|.+|..- +||-.- .+.+....+. ..++....
T Consensus 128 viaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~tg~~ 207 (449)
T COG2403 128 VIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIPTGGG 207 (449)
T ss_pred eEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccccccc
Confidence 7888887 99999999999999999999999988862 344222 2222211110 01110000
Q ss_pred -CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc-hHHHHHHHHHhhhhc
Q 008282 245 -GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT-GQEAAALVTTFNIEI 322 (571)
Q Consensus 245 -~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~-gq~a~~~~~~f~~~~ 322 (571)
-.+.+-..+++++. +..|+|+.|+.+.-- --+.||..+.|+||.. +++. ..|-..+
T Consensus 208 vlAGvdy~~vlke~~-----~~aD~IlwdGgnndf-------------Pfvkpd~~Ivvvda~rpg~ei----~~~pGe~ 265 (449)
T COG2403 208 VLAGVDYGTVLKEGE-----KEADFILWDGGNNDF-------------PFVKPDLHIVVVDALRPGEEI----GSFPGEL 265 (449)
T ss_pred eEeeeeHHHHHHHHh-----hhccEEEEeCCCCCC-------------CcccCCeeEEEecCCCCchhh----ccCCCce
Confidence 00122233344432 345999999987531 1245788899999964 5553 3444334
Q ss_pred Ce---eEEEEccCCCCCCh
Q 008282 323 GI---TGAILTKLDGDSRG 338 (571)
Q Consensus 323 ~i---~GVIlNKlD~~~~~ 338 (571)
++ +.+|+||+|....+
T Consensus 266 ~irlAD~VIItkveea~~~ 284 (449)
T COG2403 266 RIRLADLVIITKVEEAMAE 284 (449)
T ss_pred eeeeccEEEEecccccchH
Confidence 43 56999999976544
No 202
>PRK05748 replicative DNA helicase; Provisional
Probab=97.84 E-value=0.0035 Score=69.10 Aligned_cols=117 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCC-CCCCHHH--HHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQ--IAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~-~~~~p~~--v~~~~ 257 (571)
+...+++.|.+|+||||++.++|...+ +.|++|++++++.-.......+. +...+++..... ......+ .+..+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l--~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRML--CAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH--HHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 356899999999999999999999877 46999999998875544433331 222344432111 1222223 33455
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
+..+. +..+.|-|+|+. .. ..+...+..+.... +..-++|||.
T Consensus 280 ~~~l~--~~~~~i~d~~~~-ti-~~i~~~~r~~~~~~-~~~~~vvIDy 322 (448)
T PRK05748 280 MGSLS--DAPIYIDDTPGI-KV-TEIRARCRRLAQEH-GGLGLILIDY 322 (448)
T ss_pred HHHHh--cCCEEEECCCCC-CH-HHHHHHHHHHHHhc-CCCCEEEEcc
Confidence 55553 455666666653 22 23333343443322 1223667775
No 203
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.84 E-value=7e-05 Score=81.04 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+|+|.++|||||+...|.
T Consensus 161 dValVG~PNaGKSTLln~Lt 180 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS 180 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh
Confidence 48999999999999998886
No 204
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.83 E-value=0.00045 Score=72.24 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=43.2
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh------cCCeEEEEeccC-CchhHHHH
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQ 229 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~------~G~kVlLVd~D~-~Rp~a~dq 229 (571)
..+.++++++.. ...++.++|++|+||||++..+|...+. .+.+|++||++- |++....+
T Consensus 82 ~~lD~~l~GGi~-------~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 82 KELDELLGGGIE-------TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred HHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 345566665432 3579999999999999999999877652 123899999864 66654433
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.83 E-value=9.8e-05 Score=73.91 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=38.8
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHh-hhhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f-~~~~~i~GVIlNKlD~~ 335 (571)
.++.+.||||||...........+ ...|.+++|+|+..+ ......++.. ...++ .-+++||+|..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l------~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAAL------RLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHH------HhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence 467899999999865333222221 235889999999765 2222222222 22333 45889999954
No 206
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00012 Score=81.07 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=124.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+-+.|.+...--+||||++..+.+|-..- +.. -+.|.- ++.-+...+.+.-|+.+-.+. ...
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~-~~i--~ev~~~--~a~md~m~~er~rgITiqSAA-------------t~~ 99 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRI-KHI--GEVRGG--GATMDSMELERQRGITIQSAA-------------TYF 99 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeeccee-eec--cccccC--ceeeehHHHHHhcCceeeece-------------eee
Confidence 45788889999999999996654432210 111 111111 111111123344455544322 122
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCC--CCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLD--GDSR 337 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD--~~~~ 337 (571)
.|.++.+.||||||.....-+.-..|. ++ |..++|+|+..| |.....++......++ .-+++||+| +...
T Consensus 100 ~w~~~~iNiIDTPGHvDFT~EVeRALr----Vl--DGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 100 TWRDYRINIIDTPGHVDFTFEVERALR----VL--DGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASP 173 (721)
T ss_pred eeccceeEEecCCCceeEEEEehhhhh----hc--cCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCCh
Confidence 367899999999998765433333332 32 788999999777 4434444444444555 457899999 3444
Q ss_pred hhHHHHHHHHhC-------CCeEEEecCCCCCCCc-----cCCchhH--hhhccCchhHHHHHHHHHHHhch---hHHHH
Q 008282 338 GGAALSVKEVSG-------KPIKLVGRGERMEDLE-----PFYPDRM--AGRILGMGDVLSFVEKAQEVMQQ---EDAEE 400 (571)
Q Consensus 338 ~g~~lsi~~~~g-------~PI~fig~Ge~v~dl~-----~f~p~~~--~~r~lG~gdv~~l~e~a~e~l~e---~~~~~ 400 (571)
...+..+...++ +|+.--+.-..+.|+. -|+++.. +...-=.++..++.++.++.+.| +-+++
T Consensus 174 ~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~ 253 (721)
T KOG0465|consen 174 FRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDET 253 (721)
T ss_pred HHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 444444444443 3332111111122221 1111111 01111135666676666666633 23444
Q ss_pred HHHHHHc-CCCCHHHHHHHHHHHHhcCc------------------hhHHhhcCCCC
Q 008282 401 MQKKIMS-ANFDFNDFLKQTRTVARMGS------------------MSRVIGMIPGM 438 (571)
Q Consensus 401 ~~~k~~~-g~~~ledl~~ql~~~~k~G~------------------~~~i~~m~Pg~ 438 (571)
+.+.+++ .+++.+++...+++..--+. ++.+++.+|.-
T Consensus 254 l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP 310 (721)
T KOG0465|consen 254 LAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSP 310 (721)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCCh
Confidence 5555554 57999999999987654433 56677888864
No 207
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.81 E-value=0.00014 Score=70.69 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|.+||||||+...|.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~ 62 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT 62 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 478999999999999997776
No 208
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.80 E-value=5.7e-05 Score=70.41 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=45.9
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH--HHHHHHhhhhcCeeEEEEccCCCCCC---hhHHHH
Q 008282 269 VIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA--AALVTTFNIEIGITGAILTKLDGDSR---GGAALS 343 (571)
Q Consensus 269 IIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a--~~~~~~f~~~~~i~GVIlNKlD~~~~---~g~~ls 343 (571)
.+|||||-.-....+...|... +.+.+.+++|.|++..... -..+..|+ .++. =|+||+|.... ...+..
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~t--a~dad~V~ll~dat~~~~~~pP~fa~~f~--~pvI-GVITK~Dl~~~~~~i~~a~~ 113 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVT--AQDADVVLLLQDATEPRSVFPPGFASMFN--KPVI-GVITKIDLPSDDANIERAKK 113 (143)
T ss_pred cEEECChhheeCHHHHHHHHHH--HhhCCEEEEEecCCCCCccCCchhhcccC--CCEE-EEEECccCccchhhHHHHHH
Confidence 4599999876566666666333 3456889999999765322 12234454 3344 36799997733 333344
Q ss_pred HHHHhCC
Q 008282 344 VKEVSGK 350 (571)
Q Consensus 344 i~~~~g~ 350 (571)
.....|.
T Consensus 114 ~L~~aG~ 120 (143)
T PF10662_consen 114 WLKNAGV 120 (143)
T ss_pred HHHHcCC
Confidence 4555554
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.80 E-value=3.7e-05 Score=75.69 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=38.3
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH-HHHHHHHHhhhhcCe--eEEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI--TGAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i--~GVIlNKlD~~~ 336 (571)
+++..+.|+||||... +..++.. .....+.+++|+|+..+. ........+....++ .-+|+||+|...
T Consensus 74 ~~~~~~~liDTpG~~~----~~~~~~~--~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 74 TPKRKFIIADTPGHEQ----YTRNMVT--GASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred cCCceEEEEECCcHHH----HHHHHHH--hhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 4677899999999632 2222211 223468899999996552 111112223233333 234789999653
No 210
>PLN03127 Elongation factor Tu; Provisional
Probab=97.80 E-value=0.00026 Score=77.98 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=69.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE--eccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV--d~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
+...|+++|..++||||++..|..+..+.|..-.+. .+|.... ++ .-|+.+-... .
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~---E~------~rGiTi~~~~-------------~ 117 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPE---EK------ARGITIATAH-------------V 117 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChh---Hh------hcCceeeeeE-------------E
Confidence 345689999999999999999987666555421111 2332211 11 1122111000 0
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee--EEEEccCCCC
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGD 335 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~--GVIlNKlD~~ 335 (571)
.+..+++.++||||||... ++..+.. .+...|.++||+|+..+ ....+.+. +....++. -+++||+|..
T Consensus 118 ~~~~~~~~i~~iDtPGh~~----f~~~~~~--g~~~aD~allVVda~~g~~~qt~e~l~-~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHAD----YVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHIL-LARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred EEcCCCeEEEEEECCCccc----hHHHHHH--HHhhCCEEEEEEECCCCCchhHHHHHH-HHHHcCCCeEEEEEEeeccC
Confidence 0112567899999999743 3333322 22346899999999654 11122222 22244554 3579999965
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 191 ~ 191 (447)
T PLN03127 191 D 191 (447)
T ss_pred C
Confidence 3
No 211
>PRK09165 replicative DNA helicase; Provisional
Probab=97.80 E-value=0.0042 Score=69.44 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=82.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc---------------CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---------------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT 246 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~---------------G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~ 246 (571)
+..++++.|.+|+||||++.++|...+.+ |.+|++++++.-.......+ .+...+++......
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~--la~~s~v~~~~i~~ 293 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI--LSEQSEISSSKIRR 293 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhc
Confidence 34689999999999999999999887643 78999999987654443332 33444555433221
Q ss_pred -CCCHHH--HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc---c------h----H-
Q 008282 247 -EVKPSQ--IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM---T------G----Q- 309 (571)
Q Consensus 247 -~~~p~~--v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~---~------g----q- 309 (571)
..+..+ .+..+...+ ....+.|-|+|+. .. ..+...+..+....+ .-++|||.. . . +
T Consensus 294 ~~l~~~e~~~l~~a~~~l--~~~~l~I~d~~~~-ti-~~i~~~ir~l~~~~~--~~lvvIDyLqli~~~~~~~~~~r~~e 367 (497)
T PRK09165 294 GKISEEDFEKLVDASQEL--QKLPLYIDDTPAL-SI-SQLRARARRLKRQHG--LDLLVVDYLQLIRGSSKRSSDNRVQE 367 (497)
T ss_pred CCCCHHHHHHHHHHHHHH--hcCCeEEeCCCCC-CH-HHHHHHHHHHHHhcC--CCEEEEcchHhccCCCCCCCCchHHH
Confidence 223222 233444444 3455666666543 22 223333333332222 225666641 0 0 1
Q ss_pred --HHHHHHHHhhhhcCeeEEEEccCCC
Q 008282 310 --EAAALVTTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 310 --~a~~~~~~f~~~~~i~GVIlNKlD~ 334 (571)
.+.+.++.+..++++.-++++.+..
T Consensus 368 v~~is~~LK~lAkel~ipVi~lsQLnR 394 (497)
T PRK09165 368 ISEITQGLKALAKELNIPVIALSQLSR 394 (497)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeecccc
Confidence 1223345666678888888887763
No 212
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.80 E-value=0.00019 Score=72.63 Aligned_cols=40 Identities=38% Similarity=0.648 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.|+++|.+||||||++..|+.+|...|++|.+++.|..|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 3789999999999999999999998899999999887653
No 213
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.79 E-value=0.00015 Score=65.05 Aligned_cols=104 Identities=19% Similarity=0.357 Sum_probs=62.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc-----CCeEEEEeccCCc-hhHHHHHHHhhhccCCceecCCCCCCHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 256 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~-----G~kVlLVd~D~~R-p~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~ 256 (571)
.++++++|++|+|||+++..++..+... ..+|+.+++.... +.. -........+.+... ..+..+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~---~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRD--FAQEILEALGLPLKS---RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHH--HHHHHHHHHT-SSSS---TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHH--HHHHHHHHhCccccc---cCCHHHHHHH
Confidence 4689999999999999999999988754 6788888876655 222 222344444544432 2344555555
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHh
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~ 292 (571)
..+.+......+||||-.-.+. +...+..+..+..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTC
T ss_pred HHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHh
Confidence 5555554445689999887653 3555555544433
No 214
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.78 E-value=0.00011 Score=74.76 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
.+..|+++|.+||||||++..|.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHh
Confidence 35679999999999999998876
No 215
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.78 E-value=0.00033 Score=73.69 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=59.6
Q ss_pred HCCCChHHHHHHHHHHHHHhhhccccCCCChhhH--------HHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCC
Q 008282 123 EADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQ--------LVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (571)
Q Consensus 123 ~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~--------~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~Gv 194 (571)
..|++.+.+..+++......... ...++.+. ........|.++++++.. ...++.|+|++|+
T Consensus 44 ~~g~~~~~a~~l~~~a~~~~~~~---~~~t~~~l~~~~ks~~~~~Tg~~~lD~~l~GGi~-------~g~vtei~G~~Gs 113 (317)
T PRK04301 44 AAGIGESTAAKIIEAAREAADIG---GFETALEVLERRKNVGKITTGSKELDELLGGGIE-------TQSITEFYGEFGS 113 (317)
T ss_pred hcCCCHHHHHHHHHHHHHhhccc---cCccHHHHHHhhccCCccCCCCHHHHHHhcCCcc-------CCcEEEEECCCCC
Confidence 34777888888887765432110 00011000 011122456666665432 3579999999999
Q ss_pred cHHHHHHHHHHHHHhc------CCeEEEEeccC-CchhHHHH
Q 008282 195 GKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQ 229 (571)
Q Consensus 195 GKTTtaakLA~~La~~------G~kVlLVd~D~-~Rp~a~dq 229 (571)
|||+++..+|...+.. +.+|++||++- |++..+.+
T Consensus 114 GKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 114 GKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred CHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 9999999999876542 35899999974 66665444
No 216
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.78 E-value=0.00016 Score=77.00 Aligned_cols=121 Identities=14% Similarity=0.228 Sum_probs=67.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhcc---CCceecCCCC---CCHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV---GVPVYTAGTE---VKPSQIAKQG 257 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~---gv~v~~~~~~---~~p~~v~~~~ 257 (571)
.|.+++|--|+||||+..+|... .+|.++++|-.|.-..+.-..+....... .-.++....+ -...+-+..+
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 48899999999999999998753 36899999998855433212222111000 0012222111 0001112344
Q ss_pred HHHHH--hCCCcEEEEeCCCCCcccHHHHHHHH--HHHhhhCCceEEEEEeCcc
Q 008282 258 LEEAK--KKNVDVVIVDTAGRLQIDKAMMDELK--DVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 258 l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~--~i~~~~~pd~vlLVvda~~ 307 (571)
+..+. ...+|+|||+|.|... ...++..+. .+...+.-+.++-|||+..
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~-P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLAL-PKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCC-HHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 44442 2569999999999854 233333321 2222233467899999853
No 217
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.78 E-value=0.00018 Score=66.53 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
+..|+++|.+|+||||++..|.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~ 23 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL 23 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh
Confidence 3468999999999999998775
No 218
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.77 E-value=0.00023 Score=84.31 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.++-+.||||||... ...++.... ...|.+++|+|+..| +.....+.......++ .-+++||+|..
T Consensus 96 ~~~~inliDtPGh~d----F~~e~~~al--~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHH----HHHHHHHHH--hhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 356678999999753 333432222 235889999999766 2112222222222333 35899999966
No 219
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.77 E-value=0.00015 Score=84.33 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=66.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-----cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-----~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~ 257 (571)
.+.|+++|..|+||||++..|...... .|.. .+.| |.+...+ .|+.+..... ..
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~-~~~d---~~~~e~~--------rg~Ti~~~~~---------~~ 77 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQ-LYLD---FDEQEQE--------RGITINAANV---------SM 77 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCce-eecC---CCHHHHh--------hcchhhcccc---------ee
Confidence 578999999999999999988754211 0111 0111 1111110 0111100000 00
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHH-hhhhcCeeEEEEccCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDG 334 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~-f~~~~~i~GVIlNKlD~ 334 (571)
.-.+.+.+++++||||||...........+ ...|.+++|+|+..+ ......... .....++ -+++||+|.
T Consensus 78 ~~~~~~~~~~i~liDTPG~~~f~~~~~~al------~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~ 150 (720)
T TIGR00490 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAM------RAVDGAIVVVCAVEGVMPQTETVLRQALKENVKP-VLFINKVDR 150 (720)
T ss_pred EEeecCCceEEEEEeCCCccccHHHHHHHH------HhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCE-EEEEEChhc
Confidence 001234689999999999865332222222 234889999999765 222222222 2233444 389999996
Q ss_pred C
Q 008282 335 D 335 (571)
Q Consensus 335 ~ 335 (571)
.
T Consensus 151 ~ 151 (720)
T TIGR00490 151 L 151 (720)
T ss_pred c
Confidence 4
No 220
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.77 E-value=3.8e-05 Score=69.10 Aligned_cols=71 Identities=20% Similarity=0.110 Sum_probs=38.7
Q ss_pred CCcEEEEeCCCCCcccHHHH---HHHHHHHhhhCCceEEEEEeCcchHHHHHH--HHHhhhhcCeeEEEEccCCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMM---DELKDVKRVLNPTEVLLVVDAMTGQEAAAL--VTTFNIEIGITGAILTKLDGDSR 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~---~eL~~i~~~~~pd~vlLVvda~~gq~a~~~--~~~f~~~~~i~GVIlNKlD~~~~ 337 (571)
.++++|+||||......... .....+ ...++.+++|+|+......... ...+...-...-+++||+|....
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~--~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRV--LERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHH--HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 67899999999754321111 111111 2246888999998654221111 22222111224589999997643
No 221
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.76 E-value=0.00022 Score=77.69 Aligned_cols=116 Identities=23% Similarity=0.406 Sum_probs=61.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
+|+++|.+||||||+...|. |.+..+++.. ++...+ ..+. .+.+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~------~~~~~~v~~~---~g~t~d----------~~~~----------------~~~~~ 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT------GKRDAIVSDT---PGVTRD----------RKYG----------------DAEWG 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHh------CCCcceecCC---CCcccC----------ceEE----------------EEEEC
Confidence 37899999999999998876 3333332211 111000 0000 01124
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHH-H-hhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDV-K-RVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i-~-~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
+..+.|+||||.......+..++... . ..-.++.+++|+|+..+ ......+..+.. .+. .-+|+||+|...
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK-SGKPVILVANKIDGKK 121 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-hCCCEEEEEECccCCc
Confidence 56799999999753332222222111 1 12246889999999654 121222222222 222 447899999654
No 222
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.74 E-value=0.00061 Score=69.39 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=47.2
Q ss_pred HHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH
Q 008282 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 231 (571)
Q Consensus 165 L~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~ 231 (571)
|.++++++.. ...+++++|.+|+|||+++.+++...++.|.+|++|+.|--.....++..
T Consensus 12 lD~~l~GG~p-------~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 12 LDEILGGGLP-------RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred hHHHhcCCCc-------CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHH
Confidence 4555554432 35799999999999999999999999999999999999866555444443
No 223
>CHL00071 tufA elongation factor Tu
Probab=97.74 E-value=0.00023 Score=77.53 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=67.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE--eccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV--d~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
+...|+++|..++||||++..|...+..-..+.... ..|... .-...|+.+-... .
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~---------~e~~rg~T~~~~~-------------~ 68 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAP---------EEKARGITINTAH-------------V 68 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCCh---------hhhcCCEeEEccE-------------E
Confidence 345699999999999999999976543211111100 111111 0111222221110 0
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee-E-EEEccCCCC
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT-G-AILTKLDGD 335 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~-G-VIlNKlD~~ 335 (571)
.+.+++..++||||||.. .++..+ +..+...|.+++|+|+..+ ....+.+. +....++. . +++||+|..
T Consensus 69 ~~~~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~~-~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 69 EYETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHIL-LAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred EEccCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCEEEEEEEccCCC
Confidence 012356789999999943 333333 2222346899999999654 12222222 23345554 3 579999975
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 142 ~ 142 (409)
T CHL00071 142 D 142 (409)
T ss_pred C
Confidence 3
No 224
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00024 Score=75.41 Aligned_cols=148 Identities=23% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+.+.|.+...-.+||||++..+.++.. +- -+.+|+-.-..+.++...-+.-|+.+.+..-. +
T Consensus 36 kirnigiiahidagktttterily~ag---~~--~s~g~vddgdtvtdfla~erergitiqsaav~-------------f 97 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAG---AI--HSAGDVDDGDTVTDFLAIERERGITIQSAAVN-------------F 97 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhh---hh--hcccccCCCchHHHHHHHHHhcCceeeeeeee-------------c
Confidence 457888889999999999988864432 11 11122222223333333334556766543222 3
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH-HHHHHhhhhcCe-eEEEEccCCCC--CC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGI-TGAILTKLDGD--SR 337 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~-~~~~~f~~~~~i-~GVIlNKlD~~--~~ 337 (571)
.|++|.+.+|||||...+.- |+....+++ |.++.|+|+..|-++. -.+|+.....++ ..+++||+|.. ..
T Consensus 98 dwkg~rinlidtpghvdf~l----everclrvl--dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 98 DWKGHRINLIDTPGHVDFRL----EVERCLRVL--DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred ccccceEeeecCCCcceEEE----EHHHHHHHh--cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhh
Confidence 47899999999999875432 333334444 7889999998773322 234444445555 45899999954 33
Q ss_pred hhHHHHHHHHhCC-CeE
Q 008282 338 GGAALSVKEVSGK-PIK 353 (571)
Q Consensus 338 ~g~~lsi~~~~g~-PI~ 353 (571)
..++.++.+.+|. |++
T Consensus 172 e~avdsi~ekl~ak~l~ 188 (753)
T KOG0464|consen 172 ENAVDSIEEKLGAKALK 188 (753)
T ss_pred hhHHHHHHHHhCCceEE
Confidence 4566778888875 444
No 225
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.73 E-value=0.00026 Score=68.13 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh----------cCCeEEEEeccCCc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK----------QGKSCMLVAGDVYR 223 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~----------~G~kVlLVd~D~~R 223 (571)
..+++++|++|+||||++..+|..++. ++.+|+++++|-..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 358999999999999999999998886 57899999998653
No 226
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.73 E-value=0.00029 Score=62.27 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=36.8
Q ss_pred CCCcEEEEeCCCCCcccHHHH--HHHHHHHhh-hCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEcc
Q 008282 264 KNVDVVIVDTAGRLQIDKAMM--DELKDVKRV-LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTK 331 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~--~eL~~i~~~-~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNK 331 (571)
.+..++|+||||......... .....+.+. -..+.+++|+|+... ++....+..+. .-...-+|+||
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 456789999999875422211 122222222 234778999997553 22333434443 33335578887
No 227
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.73 E-value=9.6e-05 Score=71.19 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=35.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+.++.|+|+.|+||||++.+|...|..+|++|..|-.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 456999999999999999999999999999999999763
No 228
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.71 E-value=0.00024 Score=65.18 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCCcEEEEeCCCCCcccHH-HHHHH-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCCh--
Q 008282 264 KNVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSRG-- 338 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~-l~~eL-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~~-- 338 (571)
.+.++.|+||||....... .-..+ ......-..+.+++|+|+.............. ..++ .-+++||+|.....
T Consensus 41 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~-~~~~~~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 41 GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLL-ELGLPVVVALNMIDEAEKRGI 119 (158)
T ss_pred CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHH-HcCCCEEEEEehhhhcccccc
Confidence 3468999999997532210 00111 11111124688899999865433222222222 1233 35899999964321
Q ss_pred -hHHHHHHHHhCCCeEEEe
Q 008282 339 -GAALSVKEVSGKPIKLVG 356 (571)
Q Consensus 339 -g~~lsi~~~~g~PI~fig 356 (571)
.....+....+.|+..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~iS 138 (158)
T cd01879 120 KIDLDKLSELLGVPVVPTS 138 (158)
T ss_pred hhhHHHHHHhhCCCeEEEE
Confidence 122334455566664433
No 229
>PRK08506 replicative DNA helicase; Provisional
Probab=97.70 E-value=0.0058 Score=67.89 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHH--HHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~--v~~~~l 258 (571)
+...+++.|.+|+|||+++.++|..++++|++|++++++.-.......+ .+...+++...... ..+..+ .+..++
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a~ 268 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRM--LSAKTSIPLQNLRTGDLDDDEWERLSDAC 268 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999998888899999999986544433332 23344555432211 223333 234555
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
..+. +..+.|.|+++. .. ..+...+..+.... +..-++|||.
T Consensus 269 ~~l~--~~~l~I~d~~~~-ti-~~I~~~~r~l~~~~-~~~~lvvIDy 310 (472)
T PRK08506 269 DELS--KKKLFVYDSGYV-NI-HQVRAQLRKLKSQH-PEIGLAVIDY 310 (472)
T ss_pred HHHH--cCCeEEECCCCC-CH-HHHHHHHHHHHHhC-CCCCEEEEcC
Confidence 5553 445777777653 22 22223333333221 2233667775
No 230
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.69 E-value=0.00018 Score=66.38 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhh-hcCeeEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI-EIGITGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~-~~~i~GVIlNKlD~~~ 336 (571)
++.+.|+||||.-. ....+.. .....|.+++|+|+..+ ............ .....-+++||+|...
T Consensus 50 ~~~~~~~DtpG~~~----~~~~~~~--~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 50 GKRLGFIDVPGHEK----FIKNMLA--GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred CcEEEEEECCChHH----HHHHHHh--hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 56789999999632 2222211 12346889999998652 112121111111 1223458899999753
No 231
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.68 E-value=0.00068 Score=63.94 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=42.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhh-hhcCeeEEEEccCCCCCC-hh
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFN-IEIGITGAILTKLDGDSR-GG 339 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~-~~~~i~GVIlNKlD~~~~-~g 339 (571)
.++.+.|+||||.... ....... ....+.+++|+|+..+. .......... ...+ .-+|+||+|.... ..
T Consensus 65 ~~~~~~l~Dt~G~~~~----~~~~~~~--~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~ 137 (179)
T cd01890 65 QEYLLNLIDTPGHVDF----SYEVSRS--LAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADPE 137 (179)
T ss_pred CcEEEEEEECCCChhh----HHHHHHH--HHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCHH
Confidence 4677899999997532 1111111 22358889999986541 1222222211 2233 4589999996432 11
Q ss_pred -HHHHHHHHhCCC
Q 008282 340 -AALSVKEVSGKP 351 (571)
Q Consensus 340 -~~lsi~~~~g~P 351 (571)
....+...++.+
T Consensus 138 ~~~~~~~~~~~~~ 150 (179)
T cd01890 138 RVKQQIEDVLGLD 150 (179)
T ss_pred HHHHHHHHHhCCC
Confidence 123344555543
No 232
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0029 Score=67.27 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCc-hhH--------------------HHHHH----Hhh
Q 008282 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYR-PAA--------------------IDQLV----ILG 234 (571)
Q Consensus 182 ~~~VI~ivG~-~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~R-p~a--------------------~dqL~----~~~ 234 (571)
+.++++|+|- +|+|=||+|.|+|..++.+ +..|+++|.|..- .++ .+|.. ...
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~ 182 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR 182 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence 4678888865 9999999999999999864 8999999999532 111 11100 000
Q ss_pred hccCCceecCCCCCCHH-----HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-
Q 008282 235 EQVGVPVYTAGTEVKPS-----QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG- 308 (571)
Q Consensus 235 ~~~gv~v~~~~~~~~p~-----~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g- 308 (571)
-..+..++......... ......++.+. ..||+||+|-| . ... +.. ..+ ....+++++|++....
T Consensus 183 ~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp-~-~~~-~~t---~~v--L~~Sd~iviv~e~sl~s 253 (366)
T COG4963 183 LASGLKLLAAPTELAKNYDLKTGAVERLLDLLR-GSFDFVVVDLP-N-IWT-DWT---RQV--LSGSDEIVIVAEPSLAS 253 (366)
T ss_pred cCCCceeecCCcchhhhcccccchHHHHHHHhh-ccCCeEEEcCC-C-ccc-hHH---HHH--HhcCCeEEEEecccHHH
Confidence 01233444332221111 12234444443 68999999999 2 211 111 111 2235889999987432
Q ss_pred ----HHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCe
Q 008282 309 ----QEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPI 352 (571)
Q Consensus 309 ----q~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI 352 (571)
.+.++..+.++..-....+|+|+++...... ...+.+.++++-
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~-~~dl~~~~~i~~ 300 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE-PSDLEEILGIES 300 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC-HHHHHHHhCCch
Confidence 4555566666666666779999998765554 445566666543
No 233
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.66 E-value=0.00018 Score=71.64 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc------CCeEEEEeccC
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 221 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~------G~kVlLVd~D~ 221 (571)
.|.++++++.. ...++.++|++|+|||+++..++...... +.+|++++++-
T Consensus 7 ~lD~~l~GGi~-------~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 7 ALDELLGGGIE-------TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhHhhccCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45666665432 35799999999999999999998765433 47999999864
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=97.66 E-value=0.00027 Score=76.65 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=68.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE--eccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV--AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV--d~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
...|+++|..++||||++..|.....+.|..-... ..|.... +. ..|+.+-... ..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~---E~------~rg~Ti~~~~-------------~~ 69 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPE---EK------ARGITINTAH-------------VE 69 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChH---HH------hcCeEEeeeE-------------EE
Confidence 35689999999999999999987665554311110 1121110 10 1122211100 00
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeE--EEEccCCCCC
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITG--AILTKLDGDS 336 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~G--VIlNKlD~~~ 336 (571)
+.+++..++||||||.. .++.++.. .+...|.+++|+|+..+ ....+.+ .+....++.. |++||+|...
T Consensus 70 ~~~~~~~i~~iDtPG~~----~f~~~~~~--~~~~aD~~llVVDa~~g~~~qt~~~~-~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 70 YETEKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGAILVVSAADGPMPQTREHI-LLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EcCCCeEEEEEECCCHH----HHHHHHHh--hhccCCEEEEEEECCCCCchHHHHHH-HHHHHcCCCEEEEEEeecCCcc
Confidence 11256789999999963 33333322 22346889999999654 1222222 2223344443 4689999753
No 235
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.65 E-value=0.00044 Score=67.64 Aligned_cols=91 Identities=22% Similarity=0.380 Sum_probs=48.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH--HHHHHHhhhccCCceecCCCCCCHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA--IDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a--~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l 258 (571)
..|.++++.|.+|+||||++..+...+. +..+.+|+.|.+|... .+.+...... ...... ......+....+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~-~~~~~~---~~~a~~~~~~~~ 86 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPD-EASELT---QKEASRLAEKLI 86 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCC-CTHHHH---HHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhh-hhHHHH---HHHHHHHHHHHH
Confidence 4689999999999999999988876665 5677899999988432 1222211100 000000 011122445566
Q ss_pred HHHHhCCCcEEEEeCCCCCc
Q 008282 259 EEAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~ 278 (571)
+.+...++++| +||.....
T Consensus 87 ~~a~~~~~nii-~E~tl~~~ 105 (199)
T PF06414_consen 87 EYAIENRYNII-FEGTLSNP 105 (199)
T ss_dssp HHHHHCT--EE-EE--TTSS
T ss_pred HHHHHcCCCEE-EecCCCCh
Confidence 66666777655 59887654
No 236
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.65 E-value=0.028 Score=60.44 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=53.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcC--CeEEEEeccCCchhHHHHHHHhhhccCC-ceecCCCCCCHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAGDVYRPAAIDQLVILGEQVGV-PVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G--~kVlLVd~D~~Rp~a~dqL~~~~~~~gv-~v~~~~~~~~p~~v~~~~l~ 259 (571)
+..++++|++|+||||++..++..+...+ ..+..|+|..+.... .-+......++. +.- .......+......+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~-~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~ 131 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY-AIFSEIARQLFGHPPP--SSGLSFDELFDKIAE 131 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH-HHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHH
Confidence 45678999999999999999999887764 677788776554211 111112222211 110 112233444444444
Q ss_pred HHHh-CCCcEEEEeCCCCCc
Q 008282 260 EAKK-KNVDVVIVDTAGRLQ 278 (571)
Q Consensus 260 ~~~~-~~~DvIIIDTpG~l~ 278 (571)
.+.. ..+-+|+||=.-.+.
T Consensus 132 ~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 132 YLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHhcCCEEEEEECCHhHhh
Confidence 4432 335688899876553
No 237
>PRK06762 hypothetical protein; Provisional
Probab=97.65 E-value=0.00067 Score=63.97 Aligned_cols=39 Identities=41% Similarity=0.685 Sum_probs=32.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
|++|+++|++||||||++..|+..+ |..+.+++.|.+|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHHH
Confidence 6799999999999999999999877 44677888776653
No 238
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.64 E-value=0.00055 Score=63.79 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+||||||+...|.
T Consensus 3 v~ivG~~~~GKStl~~~l~ 21 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS 21 (170)
T ss_pred eEEECCCCCCHHHHHHHHh
Confidence 7899999999999998885
No 239
>PRK06696 uridine kinase; Validated
Probab=97.63 E-value=0.00014 Score=72.54 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=39.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
..|.+|+|.|.+||||||+|.+|+..|...|..|.++..|-|-.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 35789999999999999999999999998899999888887653
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.63 E-value=0.00046 Score=65.86 Aligned_cols=42 Identities=36% Similarity=0.506 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
+|.+|+|+|++|+||||++..|+..|...+..+.+++.|.+|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 567999999999999999999999998888888888877543
No 241
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.62 E-value=0.0002 Score=71.13 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~L 207 (571)
|+++|+.|+||||++..|....
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~ 23 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLL 23 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHh
Confidence 7899999999999999997543
No 242
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.62 E-value=8.3e-05 Score=74.73 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
+++.++|.+|+||||++.+|+..|.++|++|+++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 48999999999999999999999999999999995
No 243
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.62 E-value=0.00049 Score=76.99 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=36.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
..++++.|++|+|||+++..++...+++|.+|++++.+-
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 568999999999999999999998889999999999874
No 244
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.62 E-value=0.00022 Score=81.08 Aligned_cols=123 Identities=24% Similarity=0.292 Sum_probs=66.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH---hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La---~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
+.|+++|+.++||||++.+|..... +.+ .|----.|.. . .-...|+.+..... .
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~-~v~~~~~D~~------~---~ErerGiTI~~~~~-------------~ 58 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANE-AVAERVMDSN------D---LERERGITILAKNT-------------A 58 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccc-cceeecccCc------h---HHHhCCccEEeeeE-------------E
Confidence 5799999999999999999875322 111 1210001100 0 11122443332110 1
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
+.++++.+.||||||... +..++..... ..|.++||+|+..+ +.............++ .-|++||+|..
T Consensus 59 v~~~~~kinlIDTPGh~D----F~~ev~~~l~--~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 59 IRYNGTKINIVDTPGHAD----FGGEVERVLG--MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 129 (594)
T ss_pred EEECCEEEEEEECCCHHH----HHHHHHHHHH--hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 135688999999999642 3334333333 24899999999654 1111111111112333 35899999964
No 245
>PRK12735 elongation factor Tu; Reviewed
Probab=97.61 E-value=0.00054 Score=74.32 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=66.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCC-eEEE-EeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCML-VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~-kVlL-Vd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
...|+++|..++||||++..|...+.+.|. +... -..|... .+ ...|+.+-.... .
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~---~E------~~rGiT~~~~~~-------------~ 69 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAP---EE------KARGITINTSHV-------------E 69 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCCh---hH------HhcCceEEEeee-------------E
Confidence 456899999999999999999876555442 1110 0111111 01 112222211100 0
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeE--EEEccCCCC
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITG--AILTKLDGD 335 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~G--VIlNKlD~~ 335 (571)
+..++..++||||||.. .+...+. ..+...|.+++|+|+..+ ....+.+. +....++.. +++||+|..
T Consensus 70 ~~~~~~~i~~iDtPGh~----~f~~~~~--~~~~~aD~~llVvda~~g~~~qt~e~l~-~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 70 YETANRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHIL-LARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred EcCCCcEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchhHHHHHH-HHHHcCCCeEEEEEEecCCc
Confidence 11246679999999953 3333332 223356888999999654 12222222 222344542 468999965
No 246
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.61 E-value=0.00069 Score=75.41 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=65.0
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCc-
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVP- 240 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~- 240 (571)
+.|.++++++.. +.++++++|++|+||||++..++..-+++ |.++++|+++-. + +++...+...|.+
T Consensus 8 ~gLD~il~GGlp-------~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~---~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 8 EGFDDISHGGLP-------IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-P---QDIIKNARSFGWDL 76 (484)
T ss_pred hhHHHhcCCCCC-------CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-H---HHHHHHHHHcCCCH
Confidence 356777776543 46799999999999999999998876555 999999999732 2 2333333333332
Q ss_pred ----------eecCC---------CCCCHHHHHHHHHHHHHhCCCcEEEEeC
Q 008282 241 ----------VYTAG---------TEVKPSQIAKQGLEEAKKKNVDVVIVDT 273 (571)
Q Consensus 241 ----------v~~~~---------~~~~p~~v~~~~l~~~~~~~~DvIIIDT 273 (571)
++... ...+..+.+......+...+.+.|+||.
T Consensus 77 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDS 128 (484)
T TIGR02655 77 QKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDS 128 (484)
T ss_pred HHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEee
Confidence 11110 1233444555555566656889999994
No 247
>PRK08233 hypothetical protein; Provisional
Probab=97.61 E-value=0.00017 Score=68.57 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=27.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+.+|+|+|++||||||++..|+..|.. ..+...|.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCE
Confidence 579999999999999999999987742 344444443
No 248
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.61 E-value=0.00053 Score=68.96 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=39.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh------------cCCeEEEEeccCCchhHHHHHHHhhh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKK------------QGKSCMLVAGDVYRPAAIDQLVILGE 235 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~------------~G~kVlLVd~D~~Rp~a~dqL~~~~~ 235 (571)
.+.+++|++|+||||++..+|...+. .+.+|++++++-......+.+...+.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 36788999999999999999987652 46799999998655554445444443
No 249
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.60 E-value=0.0022 Score=64.22 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=36.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEE-EeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlL-Vd~D~~R 223 (571)
.++.+++|+|++|+||||++..|+..+...+-.+.+ +.+|.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 468899999999999999999999999987766666 7887654
No 250
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.60 E-value=0.00022 Score=65.04 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHH-H-HHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~e-L-~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
.+++++++||||..........+ + .........+.+++|+|+... ......... ... ...-+|+||+|...
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~-~~vi~v~nK~D~~~ 121 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-PAD-KPIIVVLNKSDLLP 121 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-hcC-CCEEEEEEchhcCC
Confidence 45689999999975432221110 1 111122346888999998633 222222221 111 22458999999654
No 251
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.60 E-value=0.0014 Score=71.41 Aligned_cols=119 Identities=22% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++..++++|.+|+||||++..|. |.....+. +. ++.. ...+.. .+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~-~~--~gtt-----------~~~~~~---------------~~ 215 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALL------GEERVIVS-DI--AGTT-----------RDSIDI---------------PF 215 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHH------CCCeeecC-CC--CCce-----------ECcEeE---------------EE
Confidence 34568999999999999998875 32222111 10 0000 000000 00
Q ss_pred HhCCCcEEEEeCCCCCccc-----HHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCeeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d-----~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i~GVIlNKlD~ 334 (571)
...+..+.|+||||.-... .+....+..+...-..|.+++|+|+..+. ............-...-+|+||+|.
T Consensus 216 ~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 216 ERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDL 295 (429)
T ss_pred EECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECccc
Confidence 1134579999999963211 11111122222233468899999996542 1122222222111224578999997
Q ss_pred C
Q 008282 335 D 335 (571)
Q Consensus 335 ~ 335 (571)
.
T Consensus 296 ~ 296 (429)
T TIGR03594 296 V 296 (429)
T ss_pred C
Confidence 5
No 252
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.60 E-value=0.00063 Score=75.01 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+|+||||+...|. |.++.++.. .++.. ..++.. .+..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~---~~gtT-----------~d~~~~---------------~i~~ 260 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL------GEERAIVTD---IAGTT-----------RDVIEE---------------HINL 260 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCcccCC---CCCcc-----------cccEEE---------------EEEE
Confidence 468999999999999998886 333322221 11110 000000 0012
Q ss_pred CCCcEEEEeCCCCCcccHHHHHH--H-HHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDE--L-KDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~e--L-~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
+++.+.|+||||.-... ..... + ..+...-..|.+++|+|+.... +....... .... ..-+|+||+|..
T Consensus 261 ~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~~~~-piiiV~NK~DL~ 334 (449)
T PRK05291 261 DGIPLRLIDTAGIRETD-DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-LKDK-PVIVVLNKADLT 334 (449)
T ss_pred CCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-cCCC-CcEEEEEhhhcc
Confidence 46679999999975322 11111 1 1122233468889999986442 11122221 1122 235899999964
No 253
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.59 E-value=0.00093 Score=72.99 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=62.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+||||||+...|. |.+..++.- .++.. ..... ....+.
T Consensus 3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~---~~~~t-----------~d~~~---------------~~~~~~ 47 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVAD---TPGVT-----------RDRIY---------------GEAEWL 47 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC---CCCCc-----------ccceE---------------EEEEEC
Confidence 58899999999999998885 444433321 11100 00000 001124
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHH--HhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i--~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
++++.|+||||....+.....++... ......|.+++|+|+..+ .........+. ..++ .-+|+||+|...
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~-~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR-KSNKPVILVVNKVDGPD 123 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCcEEEEEECccCcc
Confidence 67899999999865222222222211 122346889999998654 11112222222 2232 458899999643
No 254
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.59 E-value=0.0028 Score=74.59 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHh-hhhcCeeEEEEccCCCCCCh
Q 008282 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTF-NIEIGITGAILTKLDGDSRG 338 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f-~~~~~i~GVIlNKlD~~~~~ 338 (571)
.+|++||+++|++.. +..++ .++.+.++ .+++||++...| ..++-.+... ...+.+.|||+|..+ .
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~---~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~----~ 255 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQ---CDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG----L 255 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCH---HHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc----c
Confidence 579999999999754 22222 23334343 689999999665 3433333332 346788999999422 3
Q ss_pred hHHHHHHHH--hCCCeEEEec
Q 008282 339 GAALSVKEV--SGKPIKLVGR 357 (571)
Q Consensus 339 g~~lsi~~~--~g~PI~fig~ 357 (571)
.+...+... .++||.-++.
T Consensus 256 ~N~~~l~~~~~~~~pv~~lp~ 276 (817)
T PLN02974 256 SNEKALLSYLSNRVPVFVLPP 276 (817)
T ss_pred chHHHHHHHHhcCCcEEeCCC
Confidence 344434443 3888865543
No 255
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.59 E-value=0.00033 Score=73.28 Aligned_cols=136 Identities=19% Similarity=0.271 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCc
Q 008282 161 VRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 161 v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~ 240 (571)
-.++|.++++.-.. .......|+++|.+|+||||++..|. |.++..++. |.+.. +. ..
T Consensus 20 tq~~l~~~l~~l~~----~~~~~~rIllvGktGVGKSSliNsIl------G~~v~~vs~--f~s~t------~~----~~ 77 (313)
T TIGR00991 20 TQTKLLELLGKLKE----EDVSSLTILVMGKGGVGKSSTVNSII------GERIATVSA--FQSEG------LR----PM 77 (313)
T ss_pred HHHHHHHHHHhccc----ccccceEEEEECCCCCCHHHHHHHHh------CCCcccccC--CCCcc------ee----EE
Confidence 34566666664221 12234578999999999999998886 666543321 11110 00 00
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCccc---HHHHHHHHHHHhhhCCceEEEEE--eCc--ch--HHH
Q 008282 241 VYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVV--DAM--TG--QEA 311 (571)
Q Consensus 241 v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d---~~l~~eL~~i~~~~~pd~vlLVv--da~--~g--q~a 311 (571)
+... ...++.+.||||||..... ......+..+.....++.+++|. |.. +. ..+
T Consensus 78 ~~~~-----------------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~Dkql 140 (313)
T TIGR00991 78 MVSR-----------------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQV 140 (313)
T ss_pred EEEE-----------------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHH
Confidence 0000 0156789999999987532 11122222222222467777773 332 11 222
Q ss_pred HHHH-HHhhhhc-CeeEEEEccCCCC
Q 008282 312 AALV-TTFNIEI-GITGAILTKLDGD 335 (571)
Q Consensus 312 ~~~~-~~f~~~~-~i~GVIlNKlD~~ 335 (571)
.+.+ ..|...+ .-.-|++|+.|..
T Consensus 141 Lk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 141 IRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHhhhhhhccEEEEEECCccC
Confidence 3322 2343322 2245888999844
No 256
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.58 E-value=8.7e-05 Score=73.89 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=34.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
-+++||+||||||-+..+...|...|.+|.+|..|+-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa 41 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA 41 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence 4678999999999999999999999999999999974
No 257
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.58 E-value=0.0004 Score=67.05 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
+++.+.|+||||.. .+..++. ...-..+.+++|+|+..+. ...+... +....++ .-+|+||+|..
T Consensus 66 ~~~~~~i~DtpG~~----~~~~~~~--~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPGHA----SLIRTII--GGAQIIDLMLLVVDATKGIQTQTAECLV-IGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCCcH----HHHHHHH--HHHhhCCEEEEEEECCCCccHHHHHHHH-HHHHcCCCEEEEEECcccC
Confidence 47889999999963 2333321 1122357889999996541 1111111 1222233 34899999964
No 258
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.58 E-value=0.0002 Score=66.67 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=36.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh---hcCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~---~~~i-~GVIlNKlD~~~ 336 (571)
+++.+.++||||...... ..... ...++.+++|+|+........ ....+.. ..++ .-+|+||+|...
T Consensus 48 ~~~~~~l~Dt~G~~~~~~----~~~~~--~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 48 GNARLKFWDLGGQESLRS----LWDKY--YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred CCEEEEEEECCCChhhHH----HHHHH--hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 467899999999643211 11111 224578899999865432222 2221111 1122 458899999643
No 259
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.58 E-value=0.0024 Score=66.68 Aligned_cols=116 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.+|+++|.+.|||||+..+|. +.++=+. +|- -. .+ ++.+ -++..
T Consensus 169 pTivVaG~PNVGKSSlv~~lT------~AkpEvA---~YP-FT-------TK--~i~v-----------------Ghfe~ 212 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLT------TAKPEVA---PYP-FT-------TK--GIHV-----------------GHFER 212 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHh------cCCCccC---CCC-cc-------cc--ceeE-----------------eeeec
Confidence 478999999999999998875 3333211 110 00 01 1111 01112
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHH--HHHHhhhC-CceEEEEEeCc--chHHHHHHHHHh---hhhcC-eeEEEEccCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLN-PTEVLLVVDAM--TGQEAAALVTTF---NIEIG-ITGAILTKLDG 334 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL--~~i~~~~~-pd~vlLVvda~--~gq~a~~~~~~f---~~~~~-i~GVIlNKlD~ 334 (571)
....+=+|||||.+....+-++++ +++...-. .+.+++++|++ .|.....+..-| .+.+. ..-+|+||+|.
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 445788999999997643333322 22222211 36678889973 444443444333 22333 35689999995
Q ss_pred C
Q 008282 335 D 335 (571)
Q Consensus 335 ~ 335 (571)
.
T Consensus 293 ~ 293 (346)
T COG1084 293 A 293 (346)
T ss_pred c
Confidence 5
No 260
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.57 E-value=0.00016 Score=79.17 Aligned_cols=169 Identities=22% Similarity=0.358 Sum_probs=99.2
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH---------------HHHHH-Hhhhc-----------
Q 008282 185 VILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---------------IDQLV-ILGEQ----------- 236 (571)
Q Consensus 185 VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a---------------~dqL~-~~~~~----------- 236 (571)
.||+.|. +.+|||++++.|+..++++|++|. +|++.. .-|+. .++..
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~-----PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvL 77 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVA-----PFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVL 77 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccC-----CCchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEE
Confidence 4788888 999999999999999999999998 776542 11211 11110
Q ss_pred ------cCCceecCCC---CCCHHH-----------HHHHHHHHHHhCCCcEEEEeCCCCCcc----cHHHHHHHHHHHh
Q 008282 237 ------VGVPVYTAGT---EVKPSQ-----------IAKQGLEEAKKKNVDVVIVDTAGRLQI----DKAMMDELKDVKR 292 (571)
Q Consensus 237 ------~gv~v~~~~~---~~~p~~-----------v~~~~l~~~~~~~~DvIIIDTpG~l~~----d~~l~~eL~~i~~ 292 (571)
.+..++..+. ..++.+ .+.++++.+. +.||+|+++.+|...- +..+. .+ .+.+
T Consensus 78 LKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~-Nm-~~a~ 154 (486)
T COG1492 78 LKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIA-NM-GVAE 154 (486)
T ss_pred EeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCccccccc-ce-eeeh
Confidence 0111222111 112221 2345555443 7899999999998632 11100 00 1111
Q ss_pred hhCCceEEEEEeCcchHH---HHHHHHHh--hhhcCeeEEEEccCCCCCC--hhHHHHHHHHhCCCeEEEecCCCCCCC
Q 008282 293 VLNPTEVLLVVDAMTGQE---AAALVTTF--NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIKLVGRGERMEDL 364 (571)
Q Consensus 293 ~~~pd~vlLVvda~~gq~---a~~~~~~f--~~~~~i~GVIlNKlD~~~~--~g~~lsi~~~~g~PI~fig~Ge~v~dl 364 (571)
.. ..+++||.|-..|-. ..-...-. ..+-.|.|+|+||++++.. ...+..+.+.+|.|+ +|..+..++.
T Consensus 155 ~~-dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~v--lGv~P~~~~~ 230 (486)
T COG1492 155 IA-DAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPV--LGVLPYLKDA 230 (486)
T ss_pred hc-CCCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhhCCee--Eeeccccccc
Confidence 22 267899988654321 11111111 2245789999999998753 334555667799999 8888777553
No 261
>PRK10218 GTP-binding protein; Provisional
Probab=97.56 E-value=0.00037 Score=79.45 Aligned_cols=122 Identities=25% Similarity=0.326 Sum_probs=64.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH---hcCCeE--EEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK---KQGKSC--MLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La---~~G~kV--lLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~ 257 (571)
.+.|+++|..|+||||++..|..... +.+ .+ .+.|.+. .-...|+.+.....
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~-~~~~~v~D~~~-----------~E~erGiTi~~~~~----------- 61 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRA-ETQERVMDSND-----------LEKERGITILAKNT----------- 61 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCccccc-ccceeeecccc-----------ccccCceEEEEEEE-----------
Confidence 57899999999999999988864221 111 00 0111100 00112232221100
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.+.++++.+.||||||...... +.....+ ..|.+++|+|+..+ +........+....++ .-|++||+|..
T Consensus 62 --~i~~~~~~inliDTPG~~df~~----~v~~~l~--~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 62 --AIKWNDYRINIVDTPGHADFGG----EVERVMS--MVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred --EEecCCEEEEEEECCCcchhHH----HHHHHHH--hCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 0123678999999999754322 2222222 35889999999765 1111112222122333 25899999954
No 262
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.56 E-value=0.00093 Score=66.85 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANY 206 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~ 206 (571)
.+|.+|+++|++|+||||++..|...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999877643
No 263
>COG4240 Predicted kinase [General function prediction only]
Probab=97.56 E-value=0.00055 Score=68.14 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcC-CeEEEEeccCCchhHHHHHH
Q 008282 156 QLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRPAAIDQLV 231 (571)
Q Consensus 156 ~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G-~kVlLVd~D~~Rp~a~dqL~ 231 (571)
++.+++.+....++.. ..+..+..+.|-|+.|+|++|+||||+++.|-..|+.+| ++++-.+.|-+=-...++++
T Consensus 24 ~~~~~~~dl~Lpll~K-iap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~ 99 (300)
T COG4240 24 AFAALAQDLHLPLLAK-IAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLR 99 (300)
T ss_pred HHHHHHHHHHHHHHHh-hhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHH
Confidence 3445555555555432 234434456799999999999999999999999999887 79998888744322234443
No 264
>PRK09866 hypothetical protein; Provisional
Probab=97.55 E-value=0.0005 Score=77.69 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCcccHH-HHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcC---eeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKA-MMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIG---ITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~-l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~---i~GVIlNKlD~~ 335 (571)
.+++|||||||....... +...+.. .+-..|.+++|+|+..+ ......+.... ..+ ..-+|+||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lk-k~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAIL-AVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHH-hcCCCCCEEEEEEcccCC
Confidence 578999999999764322 2222222 23345889999998642 22222333222 222 355899999974
No 265
>PRK07773 replicative DNA helicase; Validated
Probab=97.54 E-value=0.0065 Score=72.55 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~R 223 (571)
+..++++.|.+|+|||+++.++|...+. .|++|+++.++.-.
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~ 258 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSK 258 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 3468999999999999999999998875 48999999998643
No 266
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.54 E-value=0.0011 Score=74.23 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=46.3
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHH
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQ 229 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dq 229 (571)
..|.++++++.. +..+++++|.+|+||||++..++...+++ |.+|++|+++-......++
T Consensus 18 ~~LD~~l~GG~p-------~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~ 78 (509)
T PRK09302 18 EGFDDITHGGLP-------KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRN 78 (509)
T ss_pred hhHHHhhcCCCC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHH
Confidence 467777765432 35799999999999999999999877776 9999999998654433333
No 267
>PRK07667 uridine kinase; Provisional
Probab=97.53 E-value=0.00016 Score=70.62 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=37.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+.+|+|.|.+|+||||++..|+..|.+.|.+|.+++.|-|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 35799999999999999999999999999999999999974
No 268
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.53 E-value=0.0009 Score=63.00 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=43.3
Q ss_pred EEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH-HHHHHhhhhcCeeEEEEccCCCCC-ChhHHHHHHHH
Q 008282 270 IVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGDS-RGGAALSVKEV 347 (571)
Q Consensus 270 IIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~-~~~~~f~~~~~i~GVIlNKlD~~~-~~g~~lsi~~~ 347 (571)
+|||||..........++.. ..-.+|.+++|+|+..+.... ..+..+....+ .-+++||.|... ....+......
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~--~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~-ii~v~nK~Dl~~~~~~~~~~~~~~ 117 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALIT--TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKR-QIAVISKTDMPDADVAATRKLLLE 117 (158)
T ss_pred cccCCccccCCHHHHHHHHH--HHhcCCEEEEEEeCCCcccccCHHHHhccCCCC-eEEEEEccccCcccHHHHHHHHHH
Confidence 59999974333333333322 233568899999997553221 11222221222 358999999642 22233344445
Q ss_pred hCC--CeEEE
Q 008282 348 SGK--PIKLV 355 (571)
Q Consensus 348 ~g~--PI~fi 355 (571)
.+. |+.++
T Consensus 118 ~~~~~p~~~~ 127 (158)
T PRK15467 118 TGFEEPIFEL 127 (158)
T ss_pred cCCCCCEEEE
Confidence 553 66443
No 269
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.52 E-value=0.00072 Score=74.97 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=62.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+..|+++|.+||||||++..|. |....++.. .++.. ...+.. .+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~---~~gtT-----------~d~~~~---------------~~ 254 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD---VAGTT-----------VDPVDS---------------LI 254 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC---CCCcc-----------CCcceE---------------EE
Confidence 35678999999999999998885 322221110 11110 000000 00
Q ss_pred HhCCCcEEEEeCCCCCcc-----cHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~ 334 (571)
...+..+.|+||||.... ..+....+......-..+.+++|+|++.+ ......+......-...-+|+||+|.
T Consensus 255 ~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 255 ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred EECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 114567889999995211 12233333322223356889999998654 22223333222221224588999996
Q ss_pred C
Q 008282 335 D 335 (571)
Q Consensus 335 ~ 335 (571)
.
T Consensus 335 ~ 335 (472)
T PRK03003 335 V 335 (472)
T ss_pred C
Confidence 4
No 270
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.52 E-value=0.001 Score=63.49 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
+...|+++|.+|+||||++..|.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~ 39 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALT 39 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh
Confidence 34568999999999999998775
No 271
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.52 E-value=0.0015 Score=71.42 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+..|+++|.+|+||||++..|. |....++. + .++. . ...+.. . +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll------~~~~~~~~-~--~~gt------t-----~~~~~~--~-------------~ 216 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL------GEERVIVS-D--IAGT------T-----RDSIDT--P-------------F 216 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCceeec-C--CCCc------e-----EEEEEE--E-------------E
Confidence 45679999999999999997775 33222221 1 0110 0 000000 0 0
Q ss_pred HhCCCcEEEEeCCCCCcc---c--HHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQI---D--KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~---d--~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~ 334 (571)
...+.++.|+||||.... + .+....+..+...-..|.+++|+|+..+ ......+......-...-+++||+|.
T Consensus 217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 124567999999996321 1 1111112222223346889999999654 12222222222111224589999997
Q ss_pred C
Q 008282 335 D 335 (571)
Q Consensus 335 ~ 335 (571)
.
T Consensus 297 ~ 297 (435)
T PRK00093 297 V 297 (435)
T ss_pred C
Confidence 5
No 272
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.51 E-value=0.00086 Score=72.67 Aligned_cols=126 Identities=22% Similarity=0.255 Sum_probs=67.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEE--EeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML--VAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlL--Vd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
+...|+++|..++||||++..|...+.+.|..-.. ...|.... +. .-|+.+-....
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~---E~------~rG~Ti~~~~~------------- 68 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPE---EK------ARGITINTAHV------------- 68 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHH---HH------hcCcceeeEEE-------------
Confidence 34669999999999999999998665554432111 01222111 11 11222111000
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeE--EEEccCCCC
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITG--AILTKLDGD 335 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~G--VIlNKlD~~ 335 (571)
.+..+++.+.||||||.. .+...+ +..+...|.+++|+|+..+ ....+.+.. ....++.- +++||+|..
T Consensus 69 ~~~~~~~~~~liDtpGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~-~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSATDGPMPQTREHILL-ARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred EEcCCCEEEEEEECCchH----HHHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHH-HHHcCCCEEEEEEEecccC
Confidence 011246679999999963 233332 2223346889999999754 222222222 22345543 468999964
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 142 ~ 142 (394)
T TIGR00485 142 D 142 (394)
T ss_pred C
Confidence 3
No 273
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.51 E-value=0.00076 Score=68.52 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=51.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.+++.|++|+|||+++.++|.++.++|++|+++++. .....+.. .. . ....... +.++.+ .
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~----~l~~~l~~---~~-----~-~~~~~~~----~~l~~l--~ 161 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA----DIMSAMKD---TF-----S-NSETSEE----QLLNDL--S 161 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH----HHHHHHHH---HH-----h-hccccHH----HHHHHh--c
Confidence 688999999999999999999999999999988642 12222221 00 0 0011111 233343 4
Q ss_pred CCcEEEEeCCCCCcc
Q 008282 265 NVDVVIVDTAGRLQI 279 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~ 279 (571)
.+|++|||..|....
T Consensus 162 ~~dlLvIDDig~~~~ 176 (244)
T PRK07952 162 NVDLLVIDEIGVQTE 176 (244)
T ss_pred cCCEEEEeCCCCCCC
Confidence 799999999988653
No 274
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.50 E-value=0.0079 Score=66.28 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=66.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|++||||||+...|. +....++. + + |+. ..+++... +..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~------~~~~aivs-~-~-pgt-----------Trd~~~~~---------------i~~ 248 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALL------KQDRAIVS-D-I-KGT-----------TRDVVEGD---------------FEL 248 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCCCcccC-C-C-CCc-----------EEEEEEEE---------------EEE
Confidence 458899999999999998886 22222111 1 1 111 00111000 012
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHH---HHHHhhhCCceEEEEEeCcchHHHHH-HHHHhhh-hcCeeEEEEccCCCCCCh
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNI-EIGITGAILTKLDGDSRG 338 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL---~~i~~~~~pd~vlLVvda~~gq~a~~-~~~~f~~-~~~i~GVIlNKlD~~~~~ 338 (571)
+++.+.|+||||.-.... ..... ......-..+.+++|+|++....... ....... ..+ .-+|+||+|....
T Consensus 249 ~g~~v~l~DTaG~~~~~~-~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~p-iIlV~NK~Dl~~~- 325 (442)
T TIGR00450 249 NGILIKLLDTAGIREHAD-FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKP-FILVLNKIDLKIN- 325 (442)
T ss_pred CCEEEEEeeCCCcccchh-HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCC-EEEEEECccCCCc-
Confidence 456789999999753221 11111 11222234688899999864421111 2222221 222 3489999996533
Q ss_pred hHHHHHHHHhCCCeE
Q 008282 339 GAALSVKEVSGKPIK 353 (571)
Q Consensus 339 g~~lsi~~~~g~PI~ 353 (571)
....+....+.|+.
T Consensus 326 -~~~~~~~~~~~~~~ 339 (442)
T TIGR00450 326 -SLEFFVSSKVLNSS 339 (442)
T ss_pred -chhhhhhhcCCceE
Confidence 12233444555653
No 275
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.50 E-value=0.00018 Score=79.24 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=40.9
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--------HHHHHHHHhhhhcCee--EEEEcc
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--------EAAALVTTFNIEIGIT--GAILTK 331 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--------~a~~~~~~f~~~~~i~--GVIlNK 331 (571)
.++++.+.||||||.. .+..++... +..+|.++||+|+..|- ............+++. -|++||
T Consensus 81 ~~~~~~i~lIDtPGh~----~f~~~~~~g--~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHR----DFIKNMITG--TSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred ccCCeEEEEEECCChH----HHHHHHHHh--hhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence 3467899999999954 333443222 23468899999997652 1111222233356664 368999
Q ss_pred CCC
Q 008282 332 LDG 334 (571)
Q Consensus 332 lD~ 334 (571)
+|.
T Consensus 155 mD~ 157 (446)
T PTZ00141 155 MDD 157 (446)
T ss_pred ccc
Confidence 994
No 276
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.50 E-value=0.00021 Score=70.04 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhh-hhcCeeEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFN-IEIGITGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~-~~~~i~GVIlNKlD~~~ 336 (571)
+.+.||||||.. .+..++ +..+...|.+++|+|+..+ ......+.... ......-+|+||+|...
T Consensus 83 ~~i~~iDtPG~~----~~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHE----ILMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChH----HHHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 678999999953 233332 2222245888999998642 22222222221 12222347999999653
No 277
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.50 E-value=0.00017 Score=75.78 Aligned_cols=147 Identities=20% Similarity=0.268 Sum_probs=79.3
Q ss_pred HHHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCC
Q 008282 162 RDELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGV 239 (571)
Q Consensus 162 ~~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv 239 (571)
...|...|+ ++. + ..+++-+.|+.++||||++..+.+.+.+.|..+++||++- +-|. ++..+|+
T Consensus 38 ~~~LD~aLg~GG~---p----~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~-------~a~~lGv 103 (322)
T PF00154_consen 38 SPALDYALGIGGL---P----RGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPE-------YAESLGV 103 (322)
T ss_dssp -HHHHHHTSSSSE---E----TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HH-------HHHHTT-
T ss_pred CcccchhhccCcc---c----cCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhh-------HHHhcCc
Confidence 346777776 332 1 3569999999999999999999998888899999999852 3333 2334444
Q ss_pred c---eecCCCCCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHH
Q 008282 240 P---VYTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 315 (571)
Q Consensus 240 ~---v~~~~~~~~p~~v~~~~l~~~-~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~ 315 (571)
+ ++... .+..+.+..+++.+ +...+|+|+||..+.+....++ ...+.... +-..|..-..+.+.+
T Consensus 104 dl~rllv~~--P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~-------e~~~~~~~--~g~~Ar~ms~~lr~l 172 (322)
T PF00154_consen 104 DLDRLLVVQ--PDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAEL-------EGEIGDQQ--VGLQARLMSQALRKL 172 (322)
T ss_dssp -GGGEEEEE---SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHH-------TTSTSSTS--SSHHHHHHHHHHHHH
T ss_pred cccceEEec--CCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHH-------hhcccccc--CcchHHHHHHHHHHH
Confidence 3 22111 12233333444444 4467899999999887532222 22221000 001111112333444
Q ss_pred HHhhhhcCeeEEEEccCC
Q 008282 316 TTFNIEIGITGAILTKLD 333 (571)
Q Consensus 316 ~~f~~~~~i~GVIlNKlD 333 (571)
..+....++.-|++|.+-
T Consensus 173 t~~l~~~~~~~i~INQ~R 190 (322)
T PF00154_consen 173 TPLLSKSNTTLIFINQVR 190 (322)
T ss_dssp HHHHHTTT-EEEEEEEES
T ss_pred HHHHHhhceEEEEeehHH
Confidence 444556777888888664
No 278
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.015 Score=67.41 Aligned_cols=26 Identities=42% Similarity=0.581 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..||+.|.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999998775
No 279
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.48 E-value=0.003 Score=68.67 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCcccccccC-CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCC-eEEEEeccCCchhHHHHHHHhhh
Q 008282 158 VKIVRDELVKLMGGEVSELVFAK-SRPTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDVYRPAAIDQLVILGE 235 (571)
Q Consensus 158 ~~~v~~eL~~llg~~~~~l~~~~-~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~-kVlLVd~D~~Rp~a~dqL~~~~~ 235 (571)
+..+.+++.+.+. ......... ..|.-|+++|.+.|||||+...|. |. +++ ++ |. ++.. .+
T Consensus 153 i~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~I-v~-~~--aGTT------RD 215 (444)
T COG1160 153 IGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVI-VS-DI--AGTT------RD 215 (444)
T ss_pred HHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhc------cCceEE-ec-CC--CCcc------cc
Confidence 3456677777763 111111111 246789999999999999998876 53 443 33 11 1110 00
Q ss_pred ccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcc-----cHHHHHHHHHHHhhhCCceEEEEEeCcch--
Q 008282 236 QVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG-- 308 (571)
Q Consensus 236 ~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~~~pd~vlLVvda~~g-- 308 (571)
...++ +.+++..|++|||+|.=.. ..+.+.-...+......+-++||+|+..+
T Consensus 216 ~I~~~--------------------~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~ 275 (444)
T COG1160 216 SIDIE--------------------FERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS 275 (444)
T ss_pred ceeee--------------------EEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch
Confidence 00111 1236778999999997432 11111222233333335788999999765
Q ss_pred HHHHHHHHHhhhhcC-eeEEEEccCCCCCC
Q 008282 309 QEAAALVTTFNIEIG-ITGAILTKLDGDSR 337 (571)
Q Consensus 309 q~a~~~~~~f~~~~~-i~GVIlNKlD~~~~ 337 (571)
+.-..++. |..+.+ -.-|++||.|.-..
T Consensus 276 ~qD~~ia~-~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 276 EQDLRIAG-LIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HHHHHHHH-HHHHcCCCeEEEEEccccCCc
Confidence 22223333 322333 24588999996543
No 280
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.48 E-value=0.00088 Score=78.01 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=63.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|.+||||||++..|. |.+..++. + + ++.. .++... .+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~-~-~-~gtT--------------------~d~~~~------~~~ 494 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVN-D-L-AGTT--------------------RDPVDE------IVE 494 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CccccccC-C-C-CCCC--------------------cCccee------EEE
Confidence 4578999999999999998885 33332222 1 1 1100 000000 001
Q ss_pred hCCCcEEEEeCCCCCcc-----cHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.++.++.|+||||.... ..+....+......-..+.+++|+|++.+ ......+......-...-+|+||+|..
T Consensus 495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 24667899999995321 11223333333323346888999999655 222223322222112245899999964
No 281
>PRK05439 pantothenate kinase; Provisional
Probab=97.47 E-value=0.0013 Score=68.94 Aligned_cols=43 Identities=30% Similarity=0.387 Sum_probs=37.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh--cCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~--~G~kVlLVd~D~~R 223 (571)
+.|.+|+|+|.+||||||+|..|+..|.+ .|.+|.+|..|-|-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 46889999999999999999999998876 37899999999763
No 282
>PRK06749 replicative DNA helicase; Provisional
Probab=97.47 E-value=0.021 Score=62.74 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC---CCCHHH--HHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT---EVKPSQ--IAKQ 256 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~---~~~p~~--v~~~ 256 (571)
+...|++.|.||+|||+++.++|...+++|++|++++++.-.......+ .+...+++...... ..+..+ .+..
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~--ls~~~~i~~~~l~~~~~~l~~~e~~~~~~ 262 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRM--ASCVGEVSGGRLKNPKHRFAMEDWEKVSK 262 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHH--HHhccCCCHHHHhcCcccCCHHHHHHHHH
Confidence 3468889999999999999999999998899999999987554433332 33344454332211 122222 2445
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
++..+ .+..+-|.|+++..- ..+...+..+........-++|||-
T Consensus 263 a~~~l--~~~~i~i~d~~~~t~--~~I~~~~r~~~~~~~~~~~lvvIDy 307 (428)
T PRK06749 263 AFAEI--GELPLEIYDNAGVTV--QDIWMQTRKLKRKHGDKKILIIVDY 307 (428)
T ss_pred HHHHH--hcCCEEEECCCCCCH--HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 55555 356677888877532 2233444444433221123667775
No 283
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.47 E-value=0.00071 Score=75.05 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=61.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+||||||+...|+ |.+...+. + .++. ....+.. ...+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~-~--~~gv-----------T~d~~~~---------------~~~~ 83 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRIL------GRREAVVE-D--VPGV-----------TRDRVSY---------------DAEW 83 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHh------CcCccccc-C--CCCC-----------CEeeEEE---------------EEEE
Confidence 469999999999999998886 32322111 1 1110 0000000 0012
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHH--HhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i--~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.+..+.|+||||.......+...+... ...-.+|.+++|+|+..+ .........+...-...-+|+||+|..
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 456799999999753222222222111 112346899999999654 212222222222212245789999964
No 284
>PRK05636 replicative DNA helicase; Provisional
Probab=97.46 E-value=0.064 Score=60.19 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=58.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHH--HHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~--v~~~~ 257 (571)
+...|++.|.+|+||||++.++|...+ +.|++|+++++..-.......+ ++...+++...... ..+..+ .+.++
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~--ls~~s~v~~~~i~~g~l~~~e~~~~~~a 341 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRL--LSAEAEVRLSDMRGGKMDEDAWEKLVQR 341 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 356889999999999999999998876 5689999999887655444333 34444554432221 122232 23445
Q ss_pred HHHHHhCCCcEEEEeCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~ 276 (571)
+..+ .+..+.|-|+++.
T Consensus 342 ~~~l--~~~~l~I~d~~~~ 358 (505)
T PRK05636 342 LGKI--AQAPIFIDDSANL 358 (505)
T ss_pred HHHH--hcCCEEEECCCCC
Confidence 5544 3455666677754
No 285
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.45 E-value=0.00031 Score=77.97 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=38.0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---H--HHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q--~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
++++.++||||||.- .+..++.. .+...|.+++|+|+..| | +....+..+. +...-|++||+|..
T Consensus 104 ~~~~~i~~iDTPGh~----~f~~~~~~--~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~ 173 (474)
T PRK05124 104 TEKRKFIIADTPGHE----QYTRNMAT--GASTCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLV 173 (474)
T ss_pred cCCcEEEEEECCCcH----HHHHHHHH--HHhhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeeccc
Confidence 367889999999943 23333222 12346889999999655 1 1122222222 22234799999965
No 286
>PLN03126 Elongation factor Tu; Provisional
Probab=97.45 E-value=0.0011 Score=73.75 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=66.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEE--EEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM--LVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVl--LVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
...|+++|..++||||++..|...+..-+.+.. ....|.... +. ..|+.+......
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~---Er------~rGiTi~~~~~~------------- 138 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPE---ER------ARGITINTATVE------------- 138 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChh---HH------hCCeeEEEEEEE-------------
Confidence 457899999999999999999865442111110 001121110 00 112211100000
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee--EEEEccCCCCC
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGDS 336 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~--GVIlNKlD~~~ 336 (571)
+.+++..+.||||||... ++.++. ..+..+|.+++|+|+..| ....+.+ .+....++. -+++||+|...
T Consensus 139 ~~~~~~~i~liDtPGh~~----f~~~~~--~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 139 YETENRHYAHVDCPGHAD----YVKNMI--TGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EecCCcEEEEEECCCHHH----HHHHHH--HHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHHcCCCeEEEEEecccccC
Confidence 112567899999999643 333332 222246889999998755 1112222 223344554 35799999653
No 287
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.45 E-value=0.0031 Score=68.72 Aligned_cols=139 Identities=23% Similarity=0.308 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCC
Q 008282 160 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGV 239 (571)
Q Consensus 160 ~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv 239 (571)
.+.++|.+++......-.+ ..+.-++++|+|.||||++...|+ ++..++|+ |. |+...+
T Consensus 196 ~~~~~l~~ll~~~~~g~il--r~G~kvvIiG~PNvGKSSLLNaL~------~~d~AIVT-dI--~GTTRD---------- 254 (454)
T COG0486 196 ELIAELDELLATAKQGKIL--REGLKVVIIGRPNVGKSSLLNALL------GRDRAIVT-DI--AGTTRD---------- 254 (454)
T ss_pred HHHHHHHHHHHhhhhhhhh--hcCceEEEECCCCCcHHHHHHHHh------cCCceEec-CC--CCCccc----------
Confidence 3455666655432221111 134568999999999999998887 66666665 21 221111
Q ss_pred ceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHH---HHHHhhhCCceEEEEEeCcch--HHHHHH
Q 008282 240 PVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTG--QEAAAL 314 (571)
Q Consensus 240 ~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL---~~i~~~~~pd~vlLVvda~~g--q~a~~~ 314 (571)
++... +.-+++.+.|+||+|.=..+ +..+.+ .....+-..|-+++|+|+... ..-...
T Consensus 255 -viee~---------------i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~ 317 (454)
T COG0486 255 -VIEED---------------INLNGIPVRLVDTAGIRETD-DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL 317 (454)
T ss_pred -eEEEE---------------EEECCEEEEEEecCCcccCc-cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH
Confidence 11000 01168899999999975432 222221 233333356899999999763 222222
Q ss_pred HHHhhhhcCeeEEEEccCCCCCC
Q 008282 315 VTTFNIEIGITGAILTKLDGDSR 337 (571)
Q Consensus 315 ~~~f~~~~~i~GVIlNKlD~~~~ 337 (571)
.. ....-...-+|+||.|....
T Consensus 318 ~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 318 IE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HH-hcccCCCEEEEEechhcccc
Confidence 22 12222224589999996544
No 288
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0019 Score=63.95 Aligned_cols=141 Identities=23% Similarity=0.343 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhcc
Q 008282 158 VKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQV 237 (571)
Q Consensus 158 ~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~ 237 (571)
++.-+++|.+-||++.+ -+..+++-|..|+|||-++..+++-+..+|++|++|....---..+.|...+.-..
T Consensus 10 i~~gndelDkrLGGGiP-------~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv 82 (235)
T COG2874 10 IKSGNDELDKRLGGGIP-------VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDV 82 (235)
T ss_pred ccCCcHHHHhhccCCCc-------cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCc
Confidence 33446788888888653 36789999999999999999999999999999999997754455566654332211
Q ss_pred ------C-CceecC---CCCCC---HHHHHHHHHHHHHhCCCcEEEEeCCCCCcc-c-H-HHHHHHHHHHhhhCCc-eEE
Q 008282 238 ------G-VPVYTA---GTEVK---PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI-D-K-AMMDELKDVKRVLNPT-EVL 300 (571)
Q Consensus 238 ------g-v~v~~~---~~~~~---p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~-d-~-~l~~eL~~i~~~~~pd-~vl 300 (571)
| ..+++. +...+ ....+...++..+..+.|+||||+-..... + . +..+-+..+...++-- -++
T Consensus 83 ~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 83 SDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred hHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEE
Confidence 1 112221 11111 122344555555567899999998544322 2 2 3334444455544322 234
Q ss_pred EEEeC
Q 008282 301 LVVDA 305 (571)
Q Consensus 301 LVvda 305 (571)
+.++.
T Consensus 163 lTvhp 167 (235)
T COG2874 163 LTVHP 167 (235)
T ss_pred EEeCh
Confidence 44554
No 289
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.44 E-value=0.00053 Score=75.58 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=40.0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---------HHHHHHHHhhhhcCee--EEEEcc
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGIT--GAILTK 331 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---------~a~~~~~~f~~~~~i~--GVIlNK 331 (571)
++++.+.||||||.. .+..++..- +..+|.++||+|+..|. ...+ ...+....++. -|++||
T Consensus 82 ~~~~~i~liDtPGh~----df~~~~~~g--~~~aD~aIlVVda~~G~~e~g~~~~~qT~e-h~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 82 TTKYYCTVIDAPGHR----DFIKNMITG--TSQADCAVLIIDSTTGGFEAGISKDGQTRE-HALLAFTLGVKQMICCCNK 154 (447)
T ss_pred CCCEEEEEEECCCHH----HHHHHHHhh--hhhccEEEEEEEcccCceecccCCCchHHH-HHHHHHHcCCCcEEEEEEc
Confidence 467889999999964 333333222 23468899999997641 1212 22233345663 356899
Q ss_pred CCCC
Q 008282 332 LDGD 335 (571)
Q Consensus 332 lD~~ 335 (571)
+|..
T Consensus 155 mD~~ 158 (447)
T PLN00043 155 MDAT 158 (447)
T ss_pred ccCC
Confidence 9954
No 290
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00064 Score=63.63 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=40.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
+.-+|+++|.+|+||||+++.|..+|.++|+-....|+|-.|-+
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhG 73 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHG 73 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccc
Confidence 45699999999999999999999999999999999999987655
No 291
>PRK15453 phosphoribulokinase; Provisional
Probab=97.43 E-value=0.00063 Score=70.26 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=39.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
++.+|+++|.+||||||++..|+..|...+.++.+++.|-|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4569999999999999999999999988888899999998864
No 292
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.42 E-value=0.00019 Score=78.06 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=37.9
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH-HHHHHHHHhhhhcCe--eEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGI--TGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i--~GVIlNKlD~~ 335 (571)
++++.+.||||||... +..++.. .+...|.+++|+|+..|- ........+...+++ .-|++||+|..
T Consensus 77 ~~~~~~~liDtPGh~~----f~~~~~~--~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQ----YTRNMAT--GASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred cCCeEEEEEeCCCHHH----HHHHHHH--HHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 4677899999999532 2233222 223458899999996551 111111112222333 23689999964
No 293
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.41 E-value=0.0071 Score=61.51 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=74.2
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCce
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v 241 (571)
..|.+++++- .+..++++.|.+|+|||+++.++|..++.+ |++|++++.+.-.......+ .+...+++.
T Consensus 7 ~~LD~~lgG~--------~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~--la~~s~v~~ 76 (259)
T PF03796_consen 7 PALDRLLGGL--------RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARL--LARLSGVPY 76 (259)
T ss_dssp HHHHHHHSSB---------TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHH--HHHHHTSTH
T ss_pred HHHHHHhcCC--------CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH--HHHhhcchh
Confidence 3566666642 134689999999999999999999998887 69999999987654433332 344455554
Q ss_pred ecCCC-CCCHHH--HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 242 YTAGT-EVKPSQ--IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 242 ~~~~~-~~~p~~--v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
..... ..++.+ .+..+...+ .+..+.|.|++... -..+...+..+.... ...-++|||.
T Consensus 77 ~~i~~g~l~~~e~~~~~~~~~~l--~~~~l~i~~~~~~~--~~~i~~~i~~~~~~~-~~~~~v~IDy 138 (259)
T PF03796_consen 77 NKIRSGDLSDEEFERLQAAAEKL--SDLPLYIEDTPSLT--IDDIESKIRRLKREG-KKVDVVFIDY 138 (259)
T ss_dssp HHHHCCGCHHHHHHHHHHHHHHH--HTSEEEEEESSS-B--HHHHHHHHHHHHHHS-TTEEEEEEEE
T ss_pred hhhhccccCHHHHHHHHHHHHHH--hhCcEEEECCCCCC--HHHHHHHHHHHHhhc-cCCCEEEech
Confidence 32211 122332 233444554 35568888887642 223333333343332 2334667774
No 294
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.40 E-value=0.0009 Score=69.00 Aligned_cols=106 Identities=27% Similarity=0.380 Sum_probs=58.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.|||||||.+..|+.+|...+++|.+|+-|... +. . +. +.....+......++..++.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---------~~-~-~~-y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---------ID-R-ND-YADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----------T-T-SS-S--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---------cc-h-hh-hhchhhhHHHHHHHHHHHHHhhcc
Confidence 688999999999999999999999999999999855322 00 0 01 000000111122344555555433
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
-++||+|..-.+ ..+-.|+-.+.+.......++-+++.
T Consensus 71 -~~iVI~Dd~nYi---Kg~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 71 -DTIVILDDNNYI---KGMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp --SEEEE-S---S---HHHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred -CeEEEEeCCchH---HHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 489999998765 35667777787877655555555554
No 295
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.40 E-value=0.00052 Score=70.39 Aligned_cols=40 Identities=30% Similarity=0.530 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
||+++|.+||||||++.+|+..|.+.|.+|.+++.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5899999999999999999999999999999999998865
No 296
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.40 E-value=0.00057 Score=70.60 Aligned_cols=124 Identities=22% Similarity=0.331 Sum_probs=73.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.-.|+++|.+.+||||++..+. |.||..+..-+... .....|+ +.
T Consensus 72 ~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~K~~TT--------r~~ilgi--~t------------------- 116 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSRKVHTT--------RHRILGI--IT------------------- 116 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhh------CCccccccccccce--------eeeeeEE--Ee-------------------
Confidence 3468899999999999999887 88887666433211 1111121 21
Q ss_pred hCCCcEEEEeCCCCCcccH-----HHHHHHHHHHhhh-CCceEEEEEeCcc-h----HHHHHHHHHhhhhcCe-eEEEEc
Q 008282 263 KKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVL-NPTEVLLVVDAMT-G----QEAAALVTTFNIEIGI-TGAILT 330 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~-----~l~~eL~~i~~~~-~pd~vlLVvda~~-g----q~a~~~~~~f~~~~~i-~GVIlN 330 (571)
..++.+|++||||...... ..+.-+.....++ ..|.+++|+|+.. . -........|. .+ .-+|+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys---~ips~lvmn 193 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS---KIPSILVMN 193 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh---cCCceeecc
Confidence 2678999999999875421 1122222222332 3577788889852 2 12333444443 33 347899
Q ss_pred cCCCCCChhHHHHH
Q 008282 331 KLDGDSRGGAALSV 344 (571)
Q Consensus 331 KlD~~~~~g~~lsi 344 (571)
|+|.-..-..++..
T Consensus 194 kid~~k~k~~Ll~l 207 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNL 207 (379)
T ss_pred chhcchhhhHHhhh
Confidence 99965444444443
No 297
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.40 E-value=0.0011 Score=61.13 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH---HHHh-hhh--cC-eeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTF-NIE--IG-ITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~---~~~f-~~~--~~-i~GVIlNKlD~~ 335 (571)
.+.+.|+||||....... .... ....+.+++|+|+......... .... ... .+ ..-+|+||.|..
T Consensus 43 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTV----WKCY--LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred ceEEEEEECCCCHhHHHH----HHHH--hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 467999999996422111 1111 2245788999998765322221 2111 110 12 245899999964
No 298
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.39 E-value=0.0013 Score=63.38 Aligned_cols=44 Identities=36% Similarity=0.579 Sum_probs=38.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.++.+|+++|++|+||||++..|+..+...|..+.+++.|..|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 35689999999999999999999999988888888999987664
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=97.39 E-value=0.00023 Score=84.08 Aligned_cols=131 Identities=17% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-----cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC--CCCHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT--EVKPSQIA 254 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~-----~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~--~~~p~~v~ 254 (571)
..+.|+++|+.++||||++..|...... .|. .. .+|. ++...+ .|+.+..... ..... .
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~-~~--~~D~-~~~E~~--------rgiti~~~~~~~~~~~~--~ 83 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGD-AR--FTDT-RADEQE--------RGITIKSTGISLYYEHD--L 83 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCc-ee--eccc-chhhHh--------hcceeeccceEEEeecc--c
Confidence 4568999999999999999999764321 111 00 1221 121111 1121111000 00000 0
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccC
Q 008282 255 KQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKL 332 (571)
Q Consensus 255 ~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKl 332 (571)
. ..-...++-+.||||||... +..++.... ...|.+++|+|+..| +.....+.......++ .-+++||+
T Consensus 84 ~---~~~~~~~~~i~liDtPG~~~----f~~~~~~al--~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~ 154 (836)
T PTZ00416 84 E---DGDDKQPFLINLIDSPGHVD----FSSEVTAAL--RVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKV 154 (836)
T ss_pred c---cccCCCceEEEEEcCCCHHh----HHHHHHHHH--hcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEECh
Confidence 0 00011356799999999864 333332222 235889999999665 1111222222222233 45889999
Q ss_pred CCC
Q 008282 333 DGD 335 (571)
Q Consensus 333 D~~ 335 (571)
|..
T Consensus 155 D~~ 157 (836)
T PTZ00416 155 DRA 157 (836)
T ss_pred hhh
Confidence 976
No 300
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0004 Score=76.38 Aligned_cols=145 Identities=19% Similarity=0.291 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
-+.+.++.+---||||++-.|-.. -| .|+.+..+....|.+. .-+.-||.+.......- ...
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~---tg----~i~~~~~q~q~LDkl~-vERERGITIkaQtasif--------y~~-- 121 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLEL---TG----TIDNNIGQEQVLDKLQ-VERERGITIKAQTASIF--------YKD-- 121 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHH---hC----CCCCCCchhhhhhhhh-hhhhcCcEEEeeeeEEE--------EEc--
Confidence 467888888889999999666422 23 5666666666666654 33455776543211100 000
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccCCC-CCCh
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDG-DSRG 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKlD~-~~~~ 338 (571)
...|-+.+|||||...+..+....+. .++.++|||||..| |.......+|..++.+ -.|+||+|. .+..
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRsla------ac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~i-IpVlNKIDlp~adp 194 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLA------ACDGALLVVDASQGVQAQTVANFYLAFEAGLAI-IPVLNKIDLPSADP 194 (650)
T ss_pred CCceEEEeecCCCcccccceehehhh------hcCceEEEEEcCcCchHHHHHHHHHHHHcCCeE-EEeeeccCCCCCCH
Confidence 14588999999998866544443332 25899999999777 4444445566544433 368999994 3444
Q ss_pred hHH-HHHHHHhCCCe
Q 008282 339 GAA-LSVKEVSGKPI 352 (571)
Q Consensus 339 g~~-lsi~~~~g~PI 352 (571)
..+ ..+.+.++.|-
T Consensus 195 e~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 195 ERVENQLFELFDIPP 209 (650)
T ss_pred HHHHHHHHHHhcCCc
Confidence 444 34555566543
No 301
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.39 E-value=0.0011 Score=77.59 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh---c--CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK---Q--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 256 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~---~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~ 256 (571)
..+.|+++|+.++||||++-.|...... . |.. .+ .|. .+.- +-+ |+.+........
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~-~~--~D~-~~~E--~~r------giTi~~~~~~~~------- 79 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQ-LA--LDF-DEEE--QAR------GITIKAANVSMV------- 79 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcc-ee--cCc-cHHH--HHh------hhhhhccceEEE-------
Confidence 4578999999999999999998754321 0 110 11 121 1111 111 111100000000
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-H-HHHHHHHH-hhhhcCeeEEEEccCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-EAAALVTT-FNIEIGITGAILTKLD 333 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q-~a~~~~~~-f~~~~~i~GVIlNKlD 333 (571)
+ ....+++.+.||||||..... .++...... .|.+++|+|+..| + ........ .....++ -+++||+|
T Consensus 80 -~-~~~~~~~~i~liDtPG~~df~----~~~~~~l~~--~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D 150 (731)
T PRK07560 80 -H-EYEGKEYLINLIDTPGHVDFG----GDVTRAMRA--VDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVD 150 (731)
T ss_pred -E-EecCCcEEEEEEcCCCccChH----HHHHHHHHh--cCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECch
Confidence 0 001146778999999986532 233222222 3888999999655 2 11122221 2223343 58899999
Q ss_pred CC
Q 008282 334 GD 335 (571)
Q Consensus 334 ~~ 335 (571)
..
T Consensus 151 ~~ 152 (731)
T PRK07560 151 RL 152 (731)
T ss_pred hh
Confidence 54
No 302
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.39 E-value=0.0053 Score=65.40 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=61.6
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH---hc---CCeEEEEeccC-CchhHHHHHHHhhh
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK---KQ---GKSCMLVAGDV-YRPAAIDQLVILGE 235 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La---~~---G~kVlLVd~D~-~Rp~a~dqL~~~~~ 235 (571)
..|.++++++.. ...++.++|.+|+|||+++..||.... .+ +.+|++||++- |+|.-+.++ ++
T Consensus 110 ~~LD~lL~GG~~-------~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qi---a~ 179 (342)
T PLN03186 110 RELDKILEGGIE-------TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQI---AE 179 (342)
T ss_pred HHHHHhhcCCCc-------CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHH---HH
Confidence 456776776433 356899999999999999999986433 12 24899999974 677654443 33
Q ss_pred ccCCce-------ecCCCCCCHHHH---HHHHHHHHHhCCCcEEEEeCCCCC
Q 008282 236 QVGVPV-------YTAGTEVKPSQI---AKQGLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 236 ~~gv~v-------~~~~~~~~p~~v---~~~~l~~~~~~~~DvIIIDTpG~l 277 (571)
..++.. +.. ...+..+. +......+...++++||||+-..+
T Consensus 180 ~~~~~~~~~l~~i~~~-~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~al 230 (342)
T PLN03186 180 RFGLNGADVLENVAYA-RAYNTDHQSELLLEAASMMAETRFALMIVDSATAL 230 (342)
T ss_pred HcCCChhhhccceEEE-ecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHH
Confidence 333321 111 11222222 222222233457889999987654
No 303
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0063 Score=67.13 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=55.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
-+.+.|++|+|||+++..++..+.+.|.+|++++++.+-....+.+. . ...+. +... ..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~------------~----~~~~~----f~~~-~~ 201 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIR------------S----GEMQR----FRQF-YR 201 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHh------------c----chHHH----HHHH-cc
Confidence 47889999999999999999999888999999987644222111111 0 00111 1121 25
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHH
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVK 291 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~ 291 (571)
.+|+++||=...+........++-.+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~ 228 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTF 228 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHH
Confidence 789999998877654444444444443
No 304
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.38 E-value=0.009 Score=62.99 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=41.2
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH---hcC---CeEEEEeccC-CchhH
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK---KQG---KSCMLVAGDV-YRPAA 226 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La---~~G---~kVlLVd~D~-~Rp~a 226 (571)
..|.++++++.. +..++.++|++|+||||++..++.... ..| .+|++||+.- |++.-
T Consensus 83 ~~lD~ll~gGi~-------~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 83 KELDKLLGGGIE-------TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred HHHHHHhcCCCC-------CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 467777776543 357899999999999999999986432 133 5889999864 56653
No 305
>PF13245 AAA_19: Part of AAA domain
Probab=97.38 E-value=0.00046 Score=57.47 Aligned_cols=45 Identities=33% Similarity=0.398 Sum_probs=34.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc----CCeEEEEeccCCchhHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLVAGDVYRPAAIDQLV 231 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~----G~kVlLVd~D~~Rp~a~dqL~ 231 (571)
.++++.|++|+|||+++.+++.++... +.+|++++ |...+.+.+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a---~t~~aa~~l~ 59 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA---PTRAAADELR 59 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC---CCHHHHHHHH
Confidence 477889999999999999999888765 88998886 4444445543
No 306
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.38 E-value=0.00026 Score=64.56 Aligned_cols=34 Identities=35% Similarity=0.628 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
+|+++|++||||||++..|+..+. ..+|+.|.++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHH
Confidence 588999999999999977764443 5678887643
No 307
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.38 E-value=0.011 Score=65.28 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=54.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
-+++.|++|+|||+++..++..+.++ +.+|.+++++.+.......+.. ... ....+.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~----------------~~~---~~~~~~~- 209 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRN----------------NTM---EEFKEKY- 209 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHc----------------CcH---HHHHHHH-
Confidence 48899999999999999999998876 7899999887654332222210 001 1222333
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDEL 287 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL 287 (571)
..+|+++||=...+........++
T Consensus 210 -~~~dlLiiDDi~~l~~~~~~~~~l 233 (450)
T PRK00149 210 -RSVDVLLIDDIQFLAGKERTQEEF 233 (450)
T ss_pred -hcCCEEEEehhhhhcCCHHHHHHH
Confidence 478999999987765443333343
No 308
>PRK08727 hypothetical protein; Validated
Probab=97.37 E-value=0.0022 Score=64.53 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
.+++.|++|+|||+++..++..+.++|++|.++.+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 49999999999999999999999999999998874
No 309
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.37 E-value=0.00031 Score=63.69 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=36.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhhhc---CeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIEI---GITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~~~---~i~GVIlNKlD~~ 335 (571)
..+++.|+|+||.... ......+. -+.+.+++|+|+.... .+......+.... ...-+|+||+|..
T Consensus 47 ~~~~~~l~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 47 KTVKLQIWDTAGQERF----RSITPSYY--RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEEecCChHHH----HHHHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 3578999999997421 11111121 2357889999986542 2222222222221 2346899999974
No 310
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.013 Score=69.19 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|.|+.|+||||++..||+.|.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998875
No 311
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.37 E-value=0.0014 Score=66.91 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=44.6
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH--h----cCCeEEEEeccC-CchhHHHHH
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK--K----QGKSCMLVAGDV-YRPAAIDQL 230 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La--~----~G~kVlLVd~D~-~Rp~a~dqL 230 (571)
+.|.++|+++.. ...|+=|+|++|+|||.++..||.... . .+.+|++||++- |.+.-..|+
T Consensus 25 ~~lD~~L~GGi~-------~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i 92 (256)
T PF08423_consen 25 KSLDELLGGGIP-------TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQI 92 (256)
T ss_dssp HHHHHHTTSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHH
T ss_pred HHHHHhhCCCCC-------CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHH
Confidence 467788877643 245899999999999999999987543 1 257899999875 666555554
No 312
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.36 E-value=0.0013 Score=60.49 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhh---hcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNI---EIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~---~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||...... ...... -..+.+++|+|...... .......+.. ..++ .-+|+||+|...
T Consensus 47 ~~~~~i~D~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 47 DVQLNILDTAGQEDYAA----IRDNYH--RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred EEEEEEEECCChhhhhH----HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 46789999999643211 111111 23467788888754432 2222222222 1223 358899999643
Q ss_pred C---hhHHHHHHHHhCCCeEE
Q 008282 337 R---GGAALSVKEVSGKPIKL 354 (571)
Q Consensus 337 ~---~g~~lsi~~~~g~PI~f 354 (571)
. ...........+.|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04139 121 RQVSSEEAANLARQWGVPYVE 141 (164)
T ss_pred cccCHHHHHHHHHHhCCeEEE
Confidence 1 22233455556666643
No 313
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.36 E-value=0.003 Score=56.15 Aligned_cols=43 Identities=30% Similarity=0.443 Sum_probs=36.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
...++++|++|+||||++..++..+...+.+|..++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh
Confidence 3478899999999999999999988877889998888765443
No 314
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.35 E-value=0.00094 Score=76.22 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=70.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH---hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La---~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l 258 (571)
..+.++++|..|+||||++..|..... +++..-.+.| .+. .-...|+.+........ +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD----------~~~-~ErerGiTi~~~~v~~~--------~ 66 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLD----------SMD-LERERGITIKAQAVRLN--------Y 66 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCccccccccccc----------Cch-HHhhcCCcccccEEEEE--------E
Confidence 357899999999999999988875321 1111101111 000 00112332211000000 0
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.....+++.+.||||||.... ..+...... ..|.+++|+|+..+ +............++ .-+|+||+|..
T Consensus 67 ~~~dg~~~~lnLiDTPGh~dF----~~~v~~sl~--~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 67 KAKDGETYILNLIDTPGHVDF----SYEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred EccCCCcEEEEEEECCCcHHH----HHHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 000113678999999997543 222222222 35789999999765 222121112222333 45889999964
Q ss_pred C-Chh-HHHHHHHHhCCC
Q 008282 336 S-RGG-AALSVKEVSGKP 351 (571)
Q Consensus 336 ~-~~g-~~lsi~~~~g~P 351 (571)
. ... ....+.+.++.+
T Consensus 140 ~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 140 AADPERVKQEIEDVIGID 157 (600)
T ss_pred cccHHHHHHHHHHHhCCC
Confidence 2 222 223344445554
No 315
>PRK07004 replicative DNA helicase; Provisional
Probab=97.35 E-value=0.017 Score=64.00 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=59.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHH--HHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~--v~~~~ 257 (571)
+...+++.|.+|+|||+++.++|...+ +.|++|++++++.-.......+ .+...+++...... ..+..+ .+..+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~--la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRM--LGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 346889999999999999999998876 5699999999987665544443 23333454332211 222222 23455
Q ss_pred HHHHHhCCCcEEEEeCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~ 276 (571)
+..+. +..+.|-|+|+.
T Consensus 290 ~~~l~--~~~l~I~d~~~~ 306 (460)
T PRK07004 290 VQKMS--EAQLFIDETGGL 306 (460)
T ss_pred HHHHh--cCCEEEECCCCC
Confidence 56553 456777777764
No 316
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0011 Score=63.68 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=36.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh---hcC-eeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIG-ITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~---~~~-i~GVIlNKlD~~ 335 (571)
.++.+.++||||..... .+.. . ..-..+.+++|+|+........ ....+.. ..+ ..-+|+||.|..
T Consensus 59 ~~~~~~~~D~~G~~~~~-~~~~---~--~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 59 GNIKFTTFDLGGHQQAR-RLWK---D--YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred CCEEEEEEECCCCHHHH-HHHH---H--HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 46789999999974211 1111 1 1224588899999865432211 1211111 112 245899999964
No 317
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=97.34 E-value=0.0062 Score=63.15 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 199 VSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 199 taakLA~~La~~G~kVlLVd~D~~R 223 (571)
+++.+|.+++++|++|++|++|+..
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3678999999999999999999764
No 318
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.34 E-value=0.0025 Score=58.79 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh---hcCeeEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~---~~~i~GVIlNKlD~~~-- 336 (571)
.+++.++||||..... ...... ....+.+++|+|......... ....+.. .-...-+|.||+|...
T Consensus 48 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 48 RVKLQIWDTAGQERFR----SITSSY--YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEEEECCChHHHH----HHHHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 3578899999963211 111111 123588899999865433222 1122211 1123458889999643
Q ss_pred --ChhHHHHHHHHhCCCe
Q 008282 337 --RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI 352 (571)
....+.......+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (164)
T smart00175 122 QVSREEAEAFAEEHGLPF 139 (164)
T ss_pred CCCHHHHHHHHHHcCCeE
Confidence 1233444555566664
No 319
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.33 E-value=0.0021 Score=68.70 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+++||||+...|. |..+ ++. |..-+ ..+ ...... . + .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~------~~~~-~v~-~~~~t-T~d----------~~~~~i--~-------------~-~ 234 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALT------GADV-YAA-DQLFA-TLD----------PTTRRL--D-------------L-P 234 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCce-eec-cCCcc-ccC----------CEEEEE--E-------------e-C
Confidence 468899999999999998886 3333 221 21100 000 000000 0 0 1
Q ss_pred CCCcEEEEeCCCCCcc-cHHHHHHHHH-HHhhhCCceEEEEEeCcchH--HHH----HHHHHhhhhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQI-DKAMMDELKD-VKRVLNPTEVLLVVDAMTGQ--EAA----ALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~-d~~l~~eL~~-i~~~~~pd~vlLVvda~~gq--~a~----~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.+..++|+||||.... ...+...... +..+...|.+++|+|+.... +.. .........-...-+|+||+|..
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 3467999999997421 2233332222 22234568899999986442 111 12222211111235899999964
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 315 ~ 315 (351)
T TIGR03156 315 D 315 (351)
T ss_pred C
Confidence 3
No 320
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.32 E-value=0.00034 Score=65.05 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEE-EEeccC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM-LVAGDV 221 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVl-LVd~D~ 221 (571)
+|+|+|+.|+||||++..|..+|.++|++|+ +.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7999999999999999999999999999998 777776
No 321
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.31 E-value=0.00065 Score=62.74 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH---HHHhhhh---cC-eeEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE---IG-ITGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~---~~~f~~~---~~-i~GVIlNKlD~~~ 336 (571)
++++.|+||||...... .. ... .-..+.+++|+|+...+..... ...+... .+ ..-+|.||+|...
T Consensus 42 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 42 NVSFTVWDVGGQDKIRP-LW---KHY--YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CEEEEEEECCCChhhHH-HH---HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 57899999999754211 11 111 1235788999999765332222 2211111 12 2346789999754
No 322
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.0017 Score=68.88 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..++|.|++|+|||+++..+|..+..+|++|++++++- ..+.+.... + ....+. ...++.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~----l~~~l~~~~-------~--~~~~~~----~~~~~~l-- 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE----LIEILREIR-------F--NNDKEL----EEVYDLL-- 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH----HHHHHHHHH-------h--ccchhH----HHHHHHh--
Confidence 46999999999999999999999999999999888642 233332110 0 000111 1113443
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHh
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~ 292 (571)
.++|++|||--|....+.....++-.+..
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~iin 273 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNLIN 273 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 58899999999887665554455544433
No 323
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.31 E-value=0.00026 Score=68.39 Aligned_cols=39 Identities=38% Similarity=0.530 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
+|+++|.+||||||++..|+..+...|.++.++..|-|-
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 588999999999999999999999989999999998654
No 324
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.31 E-value=0.00049 Score=73.89 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=37.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+++|.|+|.+|+||||++.+|...|.++|++|.+|-.|..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 45699999999999999999999999999999999997654
No 325
>PRK06893 DNA replication initiation factor; Validated
Probab=97.31 E-value=0.0013 Score=65.85 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+.+.|++|+|||+++..+|..+.++|.+|.++.++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 688999999999999999999999889999888764
No 326
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.31 E-value=0.00032 Score=68.57 Aligned_cols=44 Identities=36% Similarity=0.563 Sum_probs=39.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.+|.+|+|+|++|+||||++..|+..|...|..+.+++.|..+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 45789999999999999999999999988898888999998764
No 327
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.30 E-value=0.0013 Score=64.80 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=35.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+..++++|++|+||||++..++..+.+.|.++.+++|+.+
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4579999999999999999999998888889988887643
No 328
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.30 E-value=0.0022 Score=59.73 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
.|+++|.+||||||+...|.
T Consensus 2 ~i~~~G~~~~GKssli~~l~ 21 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT 21 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 58899999999999998875
No 329
>PHA00729 NTP-binding motif containing protein
Probab=97.30 E-value=0.0021 Score=64.47 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
..|+++|++|+||||+|.+||..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999998764
No 330
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.30 E-value=0.0012 Score=75.30 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=70.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.+.|+++|..|+||||++..|...... ++-..+.....+.+. .-...|+.+........ +....
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~-------i~~~~~~~~~~D~~~-~ErerGiTi~~~~v~~~--------~~~~~ 66 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGA-------ISEREMREQVLDSMD-LERERGITIKAQAVRLN--------YKAKD 66 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCC-------CccccccccccCCCh-HHHhcCCCeeeeEEEEE--------EEcCC
Confidence 478999999999999999888753210 000001111000000 00112333221100000 00000
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccCCCCC-Ch
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS-RG 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKlD~~~-~~ 338 (571)
...+.+.|+||||.... ..+..... ...+.+++|+|+..+ +............+. .-+|+||+|... ..
T Consensus 67 g~~~~l~liDTPG~~dF----~~~v~~~l--~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~~ 139 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDF----SYEVSRSL--AACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSADP 139 (595)
T ss_pred CCEEEEEEEECCCcHHH----HHHHHHHH--HhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccCH
Confidence 13478899999997543 22222222 235889999999765 222221122222333 458899999642 22
Q ss_pred h-HHHHHHHHhCCC
Q 008282 339 G-AALSVKEVSGKP 351 (571)
Q Consensus 339 g-~~lsi~~~~g~P 351 (571)
. ....+...++.+
T Consensus 140 ~~~~~el~~~lg~~ 153 (595)
T TIGR01393 140 ERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHHhCCC
Confidence 2 223455555553
No 331
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.29 E-value=0.0016 Score=60.83 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhh---hcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNI---EIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~---~~~i~GVIlNKlD~~ 335 (571)
..+++.|+||||.-... .+.. ......+.+++|+|...... .......+.. ..+ .-+|.||+|..
T Consensus 47 ~~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~ 117 (161)
T cd04124 47 KTILVDFWDTAGQERFQ-----TMHA-SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLD 117 (161)
T ss_pred EEEEEEEEeCCCchhhh-----hhhH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCc
Confidence 45678899999964221 1111 01224578899999865432 2222222221 222 35899999964
No 332
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.29 E-value=0.0028 Score=73.77 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=66.1
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCc
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~ 240 (571)
.+|..+|| ++.. ..+++.+.|++|+||||++..++....++|.+|++||++- +++. +++.+|++
T Consensus 46 ~~LD~lLg~GGip-------~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-------~A~~lGvD 111 (790)
T PRK09519 46 IALDVALGIGGLP-------RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-------YAKKLGVD 111 (790)
T ss_pred HHHHHhhcCCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-------HHHHcCCC
Confidence 56778887 5432 3579999999999999999999888888899999999863 3332 34445554
Q ss_pred e---ecCCCCCCHHHHHHHHHHH-HHhCCCcEEEEeCCCCCc
Q 008282 241 V---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 241 v---~~~~~~~~p~~v~~~~l~~-~~~~~~DvIIIDTpG~l~ 278 (571)
. +... ..+.+.+...+.. ++...+++||||+...+.
T Consensus 112 l~~llv~~--~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 112 TDSLLVSQ--PDTGEQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred hhHeEEec--CCCHHHHHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 2 1111 1222323233333 334679999999965443
No 333
>PRK08006 replicative DNA helicase; Provisional
Probab=97.29 E-value=0.061 Score=59.87 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=57.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHHH--HHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v--~~~~ 257 (571)
+...+++.|.||+|||+++.++|..++ ++|++|++++++.-.....+.+ .+...+++...... ..+..+. +..+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rl--la~~~~v~~~~i~~~~l~~~e~~~~~~a 300 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRM--LASLSRVDQTRIRTGQLDDEDWARISGT 300 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 356888999999999999999998877 4699999999986554444333 33344555332221 2333332 2344
Q ss_pred HHHHHhCCCcEEEEeCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~ 276 (571)
+..+. ....+.|-|+++.
T Consensus 301 ~~~~~-~~~~l~I~d~~~~ 318 (471)
T PRK08006 301 MGILL-EKRNMYIDDSSGL 318 (471)
T ss_pred HHHHH-hcCCEEEECCCCC
Confidence 44432 2445666677654
No 334
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.29 E-value=0.0013 Score=60.10 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|++||||||++..|.
T Consensus 2 i~i~G~~~~GKTsli~~l~ 20 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFV 20 (160)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999997774
No 335
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.29 E-value=0.00076 Score=78.23 Aligned_cols=58 Identities=31% Similarity=0.511 Sum_probs=45.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG 245 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~ 245 (571)
..+|.|+||+|||||++.|.+.|...|++|+|.+ |.-.|+|.+..--...++++...+
T Consensus 687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLts---yThsAVDNILiKL~~~~i~~lRLG 744 (1100)
T KOG1805|consen 687 YALILGMPGTGKTTTISLLIKILVALGKKVLLTS---YTHSAVDNILIKLKGFGIYILRLG 744 (1100)
T ss_pred hheeecCCCCCchhhHHHHHHHHHHcCCeEEEEe---hhhHHHHHHHHHHhccCcceeecC
Confidence 5778899999999999999999999999998876 777777776544445555555433
No 336
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.29 E-value=0.0034 Score=66.76 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=34.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 222 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~ 222 (571)
++|+|++|+||||++..|+..|. ..|++|.+++.|-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~ 39 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI 39 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence 67899999999999999999997 68999999999964
No 337
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.29 E-value=0.00055 Score=74.79 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=37.9
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc--hH-HHHHHHHHhhhhcCe--eEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQ-EAAALVTTFNIEIGI--TGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~--gq-~a~~~~~~f~~~~~i--~GVIlNKlD~~ 335 (571)
++++.+.|+||||.-.....+. ..+...|.+++|+|+.. +. ........+....++ .-|++||+|..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~------~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMI------TGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred cCCeEEEEEECCCcccchhhHh------hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 4678999999999532211111 11234688999999965 31 111111112223343 34689999965
No 338
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.28 E-value=0.00075 Score=63.90 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
+-|+++|.+||||||++.++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~ 22 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV 22 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999997776
No 339
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.0026 Score=65.58 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=56.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..++|+|++|+|||.++..++..+.++|++|.++++. ..++.+.... . ..... ..+..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~----~L~~~l~~a~-~----------~~~~~----~~l~~l-- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT----DLVQKLQVAR-R----------ELQLE----SAIAKL-- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH----HHHHHHHHHH-h----------CCcHH----HHHHHH--
Confidence 4699999999999999999999999999999887752 3334443110 0 01111 233333
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHH
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDEL 287 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL 287 (571)
..+|++|||=.|....+......+
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~L 189 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVL 189 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHH
Confidence 578999999988876654433333
No 340
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.28 E-value=0.15 Score=54.16 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=51.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc----C--CeEEEEeccCCchhHHHHHHHhhhcc---CCceecCCCCCCHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ----G--KSCMLVAGDVYRPAAIDQLVILGEQV---GVPVYTAGTEVKPSQI 253 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~----G--~kVlLVd~D~~Rp~a~dqL~~~~~~~---gv~v~~~~~~~~p~~v 253 (571)
+..++++|++|+|||+++..++..+... | ..+..++|...+.. .+.+..+...+ +..+-. ...+..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~-~~~~~~i~~~l~~~~~~~~~--~~~~~~~~ 116 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL-YQVLVELANQLRGSGEEVPT--TGLSTSEV 116 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH-HHHHHHHHHHHhhcCCCCCC--CCCCHHHH
Confidence 4568999999999999999999887643 2 45677777554421 11222222222 332211 11223333
Q ss_pred HHHHHHHHHh-CCCcEEEEeCCCCC
Q 008282 254 AKQGLEEAKK-KNVDVVIVDTAGRL 277 (571)
Q Consensus 254 ~~~~l~~~~~-~~~DvIIIDTpG~l 277 (571)
.......+.. ...-+||||=.-.+
T Consensus 117 ~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 117 FRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHhcCCeEEEEECchhhh
Confidence 3333443322 33457889987766
No 341
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.014 Score=64.43 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=49.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
-+++.|++|+|||+++..++..+.+. +.+|++++++.|.......+.. ... ....+.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~----------------~~~---~~f~~~~- 191 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE----------------GKL---NEFREKY- 191 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc----------------ccH---HHHHHHH-
Confidence 48999999999999999999988765 6799999886543332222210 001 1122222
Q ss_pred hCCCcEEEEeCCCCCc
Q 008282 263 KKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~ 278 (571)
+..+|++|||=+..+.
T Consensus 192 ~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 192 RKKVDVLLIDDVQFLI 207 (440)
T ss_pred HhcCCEEEEechhhhc
Confidence 2468999999998664
No 342
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.27 E-value=0.00046 Score=67.81 Aligned_cols=40 Identities=35% Similarity=0.530 Sum_probs=35.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++.+|+|+|++||||||++..|+..+ .+..+.+++.|.|-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 57899999999999999999999887 45789999998763
No 343
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.26 E-value=0.0033 Score=69.95 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+|+|.++|||||+...|.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls 180 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALS 180 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHh
Confidence 468999999999999998886
No 344
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.26 E-value=0.0029 Score=65.31 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=78.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH--------h----hhccCCceecCCCCCCH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI--------L----GEQVGVPVYTAGTEVKP 250 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~--------~----~~~~gv~v~~~~~~~~p 250 (571)
..+-.++|-=|+||||+...++ ..+.|+||++|-...--...++.-.. | .-..|.-|... .-+.
T Consensus 57 IPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV--k~~g 132 (391)
T KOG2743|consen 57 IPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV--KDNG 132 (391)
T ss_pred cceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe--cchH
Confidence 3477889999999999997664 23569999998754221122211100 0 11123223222 2233
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHH----HHHHhhhCCceEEEEEeCcchHHHHHHH-------HHhh
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDEL----KDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFN 319 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL----~~i~~~~~pd~vlLVvda~~gq~a~~~~-------~~f~ 319 (571)
...+.+.++ +...||+|+|+|.|.-.. ..+ ..+ ..+..-+.-|.++-|+|+.......+.. .++.
T Consensus 133 vraie~lvq--kkGkfD~IllETTGlAnP-aPi-a~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 133 VRAIENLVQ--KKGKFDHILLETTGLANP-API-ASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred HHHHHHHHh--cCCCcceEEEeccCCCCc-HHH-HHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 333444444 357899999999987532 222 222 2333334457889999985432111110 1111
Q ss_pred hhcC-eeEEEEccCCCCCC
Q 008282 320 IEIG-ITGAILTKLDGDSR 337 (571)
Q Consensus 320 ~~~~-i~GVIlNKlD~~~~ 337 (571)
++. -+.+|+||.|.-..
T Consensus 209 -QiA~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 209 -QIALADRIIMNKTDLVSE 226 (391)
T ss_pred -HHhhhheeeeccccccCH
Confidence 111 25699999996544
No 345
>PRK06904 replicative DNA helicase; Validated
Probab=97.25 E-value=0.07 Score=59.37 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC--CCCHHHH--HHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT--EVKPSQI--AKQ 256 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~--~~~p~~v--~~~ 256 (571)
+...+++.|.||+|||+++.++|...+. .|++|++++++.-.......+ .+...+++...... ..+..+. +..
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM--LASLSRVDQTKIRTGQNLDQQDWAKISS 297 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence 3468889999999999999999998774 599999999987654444333 33344555432211 2333332 334
Q ss_pred HHHHHHhCCCcEEEEeCCCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGR 276 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~ 276 (571)
++..+. ....+-|.|+++.
T Consensus 298 a~~~l~-~~~~l~I~d~~~~ 316 (472)
T PRK06904 298 TVGMFK-QKPNLYIDDSSGL 316 (472)
T ss_pred HHHHHh-cCCCEEEECCCCC
Confidence 444443 2345777777775
No 346
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.25 E-value=0.0028 Score=58.07 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+|+||||++..|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6889999999999998886
No 347
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.24 E-value=0.00098 Score=64.43 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=50.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+.-+++.|++|+|||.++..++..+.++|++|.+++.+ ..++.+... .. .... .+.+..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~~--------~~---~~~~----~~~~~~l- 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQS--------RS---DGSY----EELLKRL- 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHCC--------HC---CTTH----CHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceecccccc--------cc---ccch----hhhcCcc-
Confidence 35699999999999999999999999999999988853 334444311 00 0111 1234444
Q ss_pred hCCCcEEEEeCCCCCcccHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKA 282 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~ 282 (571)
.++|++|||=-|....+..
T Consensus 107 -~~~dlLilDDlG~~~~~~~ 125 (178)
T PF01695_consen 107 -KRVDLLILDDLGYEPLSEW 125 (178)
T ss_dssp -HTSSCEEEETCTSS---HH
T ss_pred -ccccEecccccceeeeccc
Confidence 4789999999987655443
No 348
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.013 Score=66.75 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=56.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~--~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.++|.|.+|+|||.++..++.++.+ .|++|.+++++-|-......+. . ...+ ...+.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~---~-------------~~~~---~f~~~y- 375 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIR---D-------------GKGD---SFRRRY- 375 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH---h-------------ccHH---HHHHHh-
Confidence 3889999999999999999999875 4899999987644322211111 0 0011 111222
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhh
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRV 293 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~ 293 (571)
..+|++|||=-+.+..+.....++-.+...
T Consensus 376 -~~~DLLlIDDIq~l~gke~tqeeLF~l~N~ 405 (617)
T PRK14086 376 -REMDILLVDDIQFLEDKESTQEEFFHTFNT 405 (617)
T ss_pred -hcCCEEEEehhccccCCHHHHHHHHHHHHH
Confidence 578999999988876544433444344333
No 349
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.24 E-value=0.0017 Score=60.07 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~ 23 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFI 23 (164)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999999987764
No 350
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.24 E-value=0.00057 Score=64.89 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh---c-CeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE---I-GITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~---~-~i~GVIlNKlD~~~ 336 (571)
++..+.++||||....... .... .-.++.+++|+|++..+... .....+... . ...-+|+||+|...
T Consensus 57 ~~~~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSS----WNTY--YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCeEEEEEECCCCHHHHHH----HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 4567999999997432111 1111 12468899999997653322 212222111 1 12458999999643
No 351
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.24 E-value=0.013 Score=61.29 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC--CeEEEEec
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQG--KSCMLVAG 219 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G--~kVlLVd~ 219 (571)
.++|.|++|+||||++..++..+...+ .++..+++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 478999999999999999998886543 34555554
No 352
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.24 E-value=0.00041 Score=75.41 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+|+.|+|..||||||++.+|+..|..+|++|.+|-.|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4899999999999999999999999999999997754
No 353
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0011 Score=75.04 Aligned_cols=135 Identities=24% Similarity=0.247 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.++++|.+.|||||+-..|.-. +.+|. .-.|+.|...... ++..
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~----~q~Vg-------------------NwpGvTVEkkeg~-------------~~~~ 48 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGA----NQKVG-------------------NWPGVTVEKKEGK-------------LKYK 48 (653)
T ss_pred eEEEecCCCccHHHHHHHHhcc----Cceec-------------------CCCCeeEEEEEEE-------------EEec
Confidence 5999999999999999888611 12332 2334444321100 1236
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHH--HHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCChhHH
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSRGGAA 341 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~--i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~~g~~ 341 (571)
++++-|||.||....+....+|.-. +..--+||-++-|+||+.-+......-+.. ++++ .-+.+|++|...+.|.-
T Consensus 49 ~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLl-E~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLL-ELGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHH-HcCCCeEEEeccHhhHHhcCCc
Confidence 7789999999987654333344322 222235789999999975543333222222 2333 45789999998876654
Q ss_pred ---HHHHHHhCCCeEEEe
Q 008282 342 ---LSVKEVSGKPIKLVG 356 (571)
Q Consensus 342 ---lsi~~~~g~PI~fig 356 (571)
..+.+.+|.||..+.
T Consensus 128 ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 128 IDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred ccHHHHHHHhCCCEEEEE
Confidence 446678999997443
No 354
>PF13479 AAA_24: AAA domain
Probab=97.23 E-value=0.00052 Score=68.05 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=48.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++..++|.|++|+||||++..+ .+++++|+|--... +..+. +.+.+... ++.+ +.+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~----~~~~~---~~~~i~i~---s~~~-~~~~~~~l 62 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS----LKFLD---DGDVIPIT---SWED-FLEALDEL 62 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc----hhhhc---CCCeeCcC---CHHH-HHHHHHHH
Confidence 3567899999999999999766 68999999853111 11111 33333322 2232 23444433
Q ss_pred --HhCCCcEEEEeCCCCC
Q 008282 262 --KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 --~~~~~DvIIIDTpG~l 277 (571)
...+||.|+|||...+
T Consensus 63 ~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 63 EEDEADYDTIVIDSISWL 80 (213)
T ss_pred HhccCCCCEEEEECHHHH
Confidence 2368999999998765
No 355
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.22 E-value=0.0038 Score=68.33 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=68.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
-|+|+|.++|||||+...|.. .++-+.+ -+|. +.....++ +.. ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~------ak~kIa~-ypfT--------Tl~PnlG~--v~~------------------~~ 204 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN------AKPKIAN-YHFT--------TLVPNLGV--VET------------------DD 204 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc------CCCcccc-CCcc--------eeceEEEE--EEE------------------eC
Confidence 589999999999999988862 2222111 0111 11111111 100 02
Q ss_pred CCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEEEeCcch------HHHH---HHHHHhhhhc--CeeEEEEc
Q 008282 265 NVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG------QEAA---ALVTTFNIEI--GITGAILT 330 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLVvda~~g------q~a~---~~~~~f~~~~--~i~GVIlN 330 (571)
+..++|+|+||.... ...+... -+..+-.++.+++|+|++.. ++.. ..+..|...+ ...-||+|
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~--fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQ--FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred CceEEEEECCCCcccccccchHHHH--HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 567999999997531 1112111 11222235788999998531 2221 2223333221 23458999
Q ss_pred cCCCCCChhHHHHHHHHhCCCeEEE
Q 008282 331 KLDGDSRGGAALSVKEVSGKPIKLV 355 (571)
Q Consensus 331 KlD~~~~~g~~lsi~~~~g~PI~fi 355 (571)
|+|.......+..+...++.++.++
T Consensus 283 K~DL~~~~e~l~~l~~~l~~~i~~i 307 (424)
T PRK12297 283 KMDLPEAEENLEEFKEKLGPKVFPI 307 (424)
T ss_pred CCCCcCCHHHHHHHHHHhCCcEEEE
Confidence 9996433333444555556555433
No 356
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.21 E-value=0.0041 Score=67.50 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=87.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH--hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La--~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
-+.|+++.+---||||+.-+|...-. +.+..|.=-..|. .+ +-+.-|+.++...+.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDS------nD---lEkERGITILaKnTa------------- 62 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDS------ND---LEKERGITILAKNTA------------- 62 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCc------cc---hhhhcCcEEEeccce-------------
Confidence 36788999999999999977753211 0111221000010 01 123446666644322
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccCCCC-C
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD-S 336 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKlD~~-~ 336 (571)
+.|+++.+.||||||.-.+. .|...+...+ |.++|+|||..| |.-.-.-+++...+. .-||+||+|.. +
T Consensus 63 v~~~~~~INIvDTPGHADFG----GEVERvl~MV--DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~A 135 (603)
T COG1217 63 VNYNGTRINIVDTPGHADFG----GEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALALGLK-PIVVINKIDRPDA 135 (603)
T ss_pred eecCCeEEEEecCCCcCCcc----chhhhhhhhc--ceEEEEEEcccCCCCchhhhHHHHHHcCCC-cEEEEeCCCCCCC
Confidence 23588999999999986543 4444444444 899999999654 443333345553333 34899999943 4
Q ss_pred ChhHHHH-HH----------HHhCCCeEEEecCCCCCC
Q 008282 337 RGGAALS-VK----------EVSGKPIKLVGRGERMED 363 (571)
Q Consensus 337 ~~g~~ls-i~----------~~~g~PI~fig~Ge~v~d 363 (571)
+...+.. +. +.+..||.|...-.....
T Consensus 136 rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 136 RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 4433322 11 345789988775544433
No 357
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.21 E-value=0.0003 Score=65.77 Aligned_cols=40 Identities=38% Similarity=0.630 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
+++++|.+|+||||++..|+..+...|.++.+++.|.+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 5789999999999999999999998899998899887765
No 358
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.21 E-value=0.0011 Score=65.66 Aligned_cols=116 Identities=26% Similarity=0.412 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-HHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-DQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.|+++|.+|+||||++..|. |..+ |..... .... .....+.. ..
T Consensus 2 ~IlllG~tGsGKSs~~N~il------g~~~-------f~~~~~~~~~t-----~~~~~~~~-----------------~~ 46 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL------GKEV-------FKSGSSAKSVT-----QECQKYSG-----------------EV 46 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH------TSS--------SS--TTTSS-------SS-EEEEE-----------------EE
T ss_pred EEEEECCCCCCHHHHHHHHh------cccc-------eeeccccCCcc-----cccceeee-----------------ee
Confidence 48899999999999998774 5444 221100 0000 00001100 12
Q ss_pred CCCcEEEEeCCCCCcc---cHHHHHHHHHHHhhh--CCceEEEEEeCc--ch--HHHHHHH-HHhhhhc-CeeEEEEccC
Q 008282 264 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRVL--NPTEVLLVVDAM--TG--QEAAALV-TTFNIEI-GITGAILTKL 332 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~--~pd~vlLVvda~--~g--q~a~~~~-~~f~~~~-~i~GVIlNKl 332 (571)
.+..+.||||||.... +...+.++....... .|+.++||++.. +. ..+++.+ ..|.+.+ .-.-||+|..
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 5678999999998643 345555555433332 367889999874 22 2222222 3454332 2355778888
Q ss_pred CCC
Q 008282 333 DGD 335 (571)
Q Consensus 333 D~~ 335 (571)
|..
T Consensus 127 d~~ 129 (212)
T PF04548_consen 127 DEL 129 (212)
T ss_dssp GGG
T ss_pred ccc
Confidence 743
No 359
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00043 Score=61.43 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
+|+|+|++||||||++..||..+ |..+ ++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~--i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV--ISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE--EEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE--EEecc
Confidence 68999999999999999998766 5555 45543
No 360
>PRK09183 transposase/IS protein; Provisional
Probab=97.21 E-value=0.0045 Score=63.39 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=52.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...++++|++|+|||+++..|+..+..+|++|.++++. ....++.. +... .... ..+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~----~l~~~l~~-a~~~----------~~~~----~~~~~~- 161 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA----DLLLQLST-AQRQ----------GRYK----TTLQRG- 161 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH----HHHHHHHH-HHHC----------CcHH----HHHHHH-
Confidence 34688999999999999999998888899999987642 22222221 1000 0111 112221
Q ss_pred hCCCcEEEEeCCCCCcccHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAM 283 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l 283 (571)
...+|++|||--|....+...
T Consensus 162 ~~~~dlLiiDdlg~~~~~~~~ 182 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQEE 182 (259)
T ss_pred hcCCCEEEEcccccCCCChHH
Confidence 157799999999887665443
No 361
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.21 E-value=0.002 Score=60.83 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|.+||||||++..|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc
Confidence 457899999999999997775
No 362
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.18 E-value=0.00041 Score=67.49 Aligned_cols=39 Identities=36% Similarity=0.552 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCe----EEEEeccCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKS----CMLVAGDVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~k----VlLVd~D~~R 223 (571)
||+|+|++||||||+|..|+..|.+.|.. +.++..|.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999988876 7788888765
No 363
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.078 Score=60.81 Aligned_cols=27 Identities=44% Similarity=0.554 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK 209 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~ 209 (571)
+..++|+|+.|+||||++..||..|.-
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568899999999999999999988753
No 364
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.18 E-value=0.0011 Score=60.06 Aligned_cols=19 Identities=53% Similarity=0.672 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|++||||||+...|.
T Consensus 2 i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc
Confidence 6899999999999997774
No 365
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.00096 Score=67.32 Aligned_cols=100 Identities=27% Similarity=0.421 Sum_probs=69.0
Q ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCccc---c-c--ccCCCCEEEEEEc
Q 008282 117 IRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE---L-V--FAKSRPTVILLAG 190 (571)
Q Consensus 117 i~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~---l-~--~~~~~~~VI~ivG 190 (571)
+.+.|..+||.+.++-.+.-.+++.+.++.. .+-..+++.+ ++..|.+-.+++... + . .....|.||++-|
T Consensus 20 L~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~--~~v~~~eir~-~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGG 96 (299)
T COG2074 20 LARSLTAAGVDPDLAYSIAIEIQEELKKEGI--RLVTKDEIRE-VYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGG 96 (299)
T ss_pred HHHHHHhcccChhHHHHHHHHHHHHHHhCCC--eEeeHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhccCCCeEEEecC
Confidence 5677999999999999999999888776553 2334566666 555554433333221 1 1 1234588999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 191 LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 191 ~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.+||||||+|.-||..| |.+- ++.+|.-|
T Consensus 97 asGVGkStIA~ElA~rL---gI~~-visTD~IR 125 (299)
T COG2074 97 ASGVGKSTIAGELARRL---GIRS-VISTDSIR 125 (299)
T ss_pred CCCCChhHHHHHHHHHc---CCce-eecchHHH
Confidence 99999999998888665 5554 67778543
No 366
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.18 E-value=0.0041 Score=63.68 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCe--EEEEeccCCc
Q 008282 160 IVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKS--CMLVAGDVYR 223 (571)
Q Consensus 160 ~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~k--VlLVd~D~~R 223 (571)
.+..++...++.. ....|.||+++|+.||||||++..|+..+++.+.+ |-+|..|-|-
T Consensus 65 ~~~~~~~~~l~~~------~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 65 RLFAELLRFLGTN------NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred HHHHHHHHHhccC------CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 3445555555521 23568999999999999999999999999988754 9999999875
No 367
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0055 Score=63.95 Aligned_cols=90 Identities=26% Similarity=0.364 Sum_probs=63.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----cC------CeEEEEeccCCchhHHHHHHHhhhccCCce---ecCC-----
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKK----QG------KSCMLVAGDVYRPAAIDQLVILGEQVGVPV---YTAG----- 245 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~----~G------~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v---~~~~----- 245 (571)
.+.++.|.+|+||||++.-|.-+++. -| .+|++|+|..+|+...+.+......+|++- ...+
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 35566699999999999988877652 14 489999999999999998887777776541 1111
Q ss_pred ---CC---CCHHHHHHHHHHHHHhCCCcEEEEeCC
Q 008282 246 ---TE---VKPSQIAKQGLEEAKKKNVDVVIVDTA 274 (571)
Q Consensus 246 ---~~---~~p~~v~~~~l~~~~~~~~DvIIIDTp 274 (571)
.+ ..| .+.+.....+....+|+||||+-
T Consensus 170 Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 170 GAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred cCCCccccccH-HHHHHHHHHHHHhCCCeEEEcch
Confidence 11 223 34555555565568999999983
No 368
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.17 E-value=0.0067 Score=55.90 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+||||||++..|.
T Consensus 3 i~~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYC 21 (168)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998775
No 369
>PRK11058 GTPase HflX; Provisional
Probab=97.17 E-value=0.0031 Score=69.12 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.++|||||+...|. |.++. +.--++. ..+.. ...+. + ..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~~~~t--Tld~~--------~~~i~-----------------l-~~ 243 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRIT------EARVY-AADQLFA--TLDPT--------LRRID-----------------V-AD 243 (426)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcee-eccCCCC--CcCCc--------eEEEE-----------------e-CC
Confidence 58899999999999998885 44443 2111110 00000 00000 0 12
Q ss_pred CCcEEEEeCCCCCcc-cHHHHHHHH-HHHhhhCCceEEEEEeCcchH--HHHH----HHHHhhhhcCeeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQI-DKAMMDELK-DVKRVLNPTEVLLVVDAMTGQ--EAAA----LVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~-d~~l~~eL~-~i~~~~~pd~vlLVvda~~gq--~a~~----~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
...++|+||||.... ...+..... .+......|.+++|+|++... +... .+......-...-+|+||+|..
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 236899999998432 233333322 223334568899999986542 2211 1222221111234899999964
No 370
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.17 E-value=0.00095 Score=75.70 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=64.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|++|+||||++..|. |.++..+ +.+++..... ..+.. ..
T Consensus 119 lrIvLVGKTGVGKSSLINSIL------Gekvf~v--ss~~~~TTr~---------~ei~~------------------~i 163 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIF------GEVKFST--DAFGMGTTSV---------QEIEG------------------LV 163 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHh------ccccccc--cCCCCCceEE---------EEEEE------------------EE
Confidence 469999999999999999886 5554433 2333332110 00000 01
Q ss_pred CCCcEEEEeCCCCCccc------HHHHHHHHHHHhhhCCceEEEEEeCc---ch-H--HHHHHH-HHhhhhc-CeeEEEE
Q 008282 264 KNVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAM---TG-Q--EAAALV-TTFNIEI-GITGAIL 329 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d------~~l~~eL~~i~~~~~pd~vlLVvda~---~g-q--~a~~~~-~~f~~~~-~i~GVIl 329 (571)
.+..+.||||||..... .....++..+.....++.+++|.... .. + .+++.+ ..|.+.+ .-.-||+
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 45679999999998542 12222333333333467667775432 11 1 122222 2344332 3356899
Q ss_pred ccCCCCC
Q 008282 330 TKLDGDS 336 (571)
Q Consensus 330 NKlD~~~ 336 (571)
|+.|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9998653
No 371
>PRK06321 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.094 Score=58.36 Aligned_cols=115 Identities=14% Similarity=0.225 Sum_probs=67.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHHH--HHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQGL 258 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v--~~~~l 258 (571)
...+++.|.+|+|||+++.++|..++ +.|++|++++++.-.....+.+ .+...+++...... ..+..+. +..++
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a~ 303 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRI--ICSRSEVESKKISVGDLSGRDFQRIVSVV 303 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH--HHhhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 46889999999999999999999887 4699999999987655544443 23344554322211 2233332 33455
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
..+. +..+.|-|+|+.. . ..+...+..+..-.+ .-++|||.
T Consensus 304 ~~l~--~~~~~idd~~~~t-i-~~i~~~~r~~~~~~~--~~lvvIDy 344 (472)
T PRK06321 304 NEMQ--EHTLLIDDQPGLK-I-TDLRARARRMKESYD--IQFLIIDY 344 (472)
T ss_pred HHHH--cCCEEEeCCCCCC-H-HHHHHHHHHHHHhcC--CCEEEEcc
Confidence 5543 3455566666542 2 223333333333222 12677775
No 372
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.17 E-value=0.0012 Score=64.75 Aligned_cols=102 Identities=29% Similarity=0.350 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH--
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA-- 261 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~-- 261 (571)
+++++.|++|+||||++..++..+...|++|.+++. -. .+...|. +..+++..... ..+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap--T~-~Aa~~L~---~~~~~~a~Ti~----------~~l~~~~~ 82 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP--TN-KAAKELR---EKTGIEAQTIH----------SFLYRIPN 82 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES--SH-HHHHHHH---HHHTS-EEEHH----------HHTTEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC--cH-HHHHHHH---HhhCcchhhHH----------HHHhcCCc
Confidence 588899999999999999999999999999987762 22 2223333 23334332210 000000
Q ss_pred -------HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCC--ceEEEEEeCc
Q 008282 262 -------KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP--TEVLLVVDAM 306 (571)
Q Consensus 262 -------~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~p--d~vlLVvda~ 306 (571)
....++++|||=++.+. ...+. .+...+.. ..+++|-|..
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~--~~~~~---~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVD--SRQLA---RLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-B--HHHHH---HHHHHS-T-T-EEEEEE-TT
T ss_pred ccccccccCCcccEEEEecccccC--HHHHH---HHHHHHHhcCCEEEEECCcc
Confidence 02567899999999875 33333 33344333 4577887864
No 373
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.17 E-value=0.0019 Score=66.82 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
+.+|+++|++||||||++..|+..+. ...+++.|.+|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHH
Confidence 46899999999999999999887662 456888887653
No 374
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.17 E-value=0.0012 Score=64.30 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+|+||||++..|.
T Consensus 3 kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR 22 (197)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998886
No 375
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.16 E-value=0.00085 Score=77.10 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=37.3
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---H--HHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---Q--EAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q--~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
+++..++||||||... +...+.. .+...|.+++|+|+..+ + +....+..+. ....-|++||+|..
T Consensus 101 ~~~~~~~liDtPG~~~----f~~~~~~--~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ----YTRNMVT--GASTADLAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNKMDLV 170 (632)
T ss_pred cCCceEEEEECCChHH----HHHHHHH--HHHhCCEEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEecccc
Confidence 4677899999999532 2222211 23346889999999654 1 1222222221 12233689999965
No 376
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.16 E-value=0.001 Score=66.47 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=50.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
|..++|.|++|+||||++..|+ .++++++.|-- . . .+....++++...+. ..+.+.+.+.+..+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~--~--~---~l~g~~~~~v~~~d~-~~~~~~~~d~l~~~~ 76 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS--S--K---VLIGDENVDIADHDD-MPPIQAMVEFYVMQN 76 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc--c--h---hccCCCCCceeecCC-CCCHHHHHHHHHHHH
Confidence 5679999999999999997774 46778898852 1 1 112223445543322 223333344444433
Q ss_pred --hCCCcEEEEeCCCCC
Q 008282 263 --KKNVDVVIVDTAGRL 277 (571)
Q Consensus 263 --~~~~DvIIIDTpG~l 277 (571)
..+||.|+||+...+
T Consensus 77 ~~~~~ydtVVIDsI~~l 93 (220)
T TIGR01618 77 IQAVKYDNIVIDNISAL 93 (220)
T ss_pred hccccCCEEEEecHHHH
Confidence 257999999998765
No 377
>PLN03118 Rab family protein; Provisional
Probab=97.15 E-value=0.001 Score=65.30 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+|+|.+||||||++..|+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~ 35 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFI 35 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 458889999999999998875
No 378
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.15 E-value=0.0037 Score=58.27 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHH---HHhhhh--cC-eeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNIE--IG-ITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~---~~f~~~--~~-i~GVIlNKlD~~~~- 337 (571)
.+.+-|+||||.... ....... .-..+.+++|+|+...+...... ...... -+ ..-+|.||.|....
T Consensus 50 ~~~~~i~D~~G~~~~----~~~~~~~--~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 50 TIKLQIWDTAGQERF----RTITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEEECCCcHhH----HHHHHHH--hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 457889999995321 1111111 12458889999987654332222 111111 11 23478899995422
Q ss_pred ---hhHHHHHHHHhCCCeEE
Q 008282 338 ---GGAALSVKEVSGKPIKL 354 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~f 354 (571)
...+...+...+.|+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (166)
T cd01869 124 VVDYSEAQEFADELGIPFLE 143 (166)
T ss_pred CCCHHHHHHHHHHcCCeEEE
Confidence 12334455556666543
No 379
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.15 E-value=0.0029 Score=59.30 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|++||||||+...|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh
Confidence 4569999999999999997775
No 380
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.15 E-value=0.0019 Score=58.61 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+||||||+...|.
T Consensus 3 v~liG~~~vGKSsL~~~l~ 21 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQ 21 (142)
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999997775
No 381
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.13 E-value=0.0062 Score=64.20 Aligned_cols=42 Identities=36% Similarity=0.512 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
+| .++++|+.-+||||++.-|..|..++|+++++|+.|+..+
T Consensus 103 GP-rv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 103 GP-RVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred CC-EEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 45 5889999999999999999999999999999999998763
No 382
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.13 E-value=0.0067 Score=70.78 Aligned_cols=118 Identities=20% Similarity=0.255 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.++|||||+...|. |.+..++.- .|+.. . ..... ...+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~---~pGvT------~-----d~~~~---------------~~~~ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED---TPGVT------R-----DRVSY---------------DAEW 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC---CCCee------E-----EEEEE---------------EEEE
Confidence 579999999999999998886 444433321 12210 0 00000 0013
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHH--HHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKD--VKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~--i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
.+..+.++||||.......+...+.. ....-.+|.+++|+|+..+- .-...+..+...-...-+|+||+|...
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 46789999999975321111111111 11123468999999996541 111222323222223457889999643
No 383
>PRK12377 putative replication protein; Provisional
Probab=97.13 E-value=0.0032 Score=64.15 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..++|.|++|+|||+++..+|..+.++|++|.+++.. ...+.+...-. . ... ..+.++.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~----~l~~~l~~~~~--------~--~~~----~~~~l~~l-- 161 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP----DVMSRLHESYD--------N--GQS----GEKFLQEL-- 161 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH----HHHHHHHHHHh--------c--cch----HHHHHHHh--
Confidence 4689999999999999999999999999999888754 33333331110 0 001 11234444
Q ss_pred CCCcEEEEeCCCCCccc
Q 008282 264 KNVDVVIVDTAGRLQID 280 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d 280 (571)
..+|++|||=-|.....
T Consensus 162 ~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 162 CKVDLLVLDEIGIQRET 178 (248)
T ss_pred cCCCEEEEcCCCCCCCC
Confidence 68999999998876543
No 384
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.13 E-value=0.0083 Score=58.78 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEe
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVA 218 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd 218 (571)
+|+|+|++|+||||++..|+.++... +.++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 68999999999999999998888754 44554433
No 385
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.13 E-value=0.00084 Score=63.80 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+++.|+|.+|+||||++.+|+..|..+|++|.+|..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 589999999999999999999999999999999987654
No 386
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.13 E-value=0.0021 Score=62.33 Aligned_cols=84 Identities=27% Similarity=0.434 Sum_probs=47.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhc-cCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ-VGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~-~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..|+++|+.|+|||++-..|... ..+- + +... .++.... . .
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~-----~~~~-----T-----------~tS~e~n~~~~~-~----------------~ 45 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNG-----KTVP-----T-----------VTSMENNIAYNV-N----------------N 45 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHS-----S--------B--------------SSEEEECCG-S----------------S
T ss_pred ceEEEEcCCCCCHHHHHHHHhcC-----CcCC-----e-----------eccccCCceEEe-e----------------c
Confidence 47999999999999999777632 1111 1 1100 0110000 0 0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
..+..+-|||+||....-..+..++.... ..-.+++|+|+.+.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~~~~---~~k~IIfvvDSs~~ 88 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELKYLS---NAKGIIFVVDSSTD 88 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHHHHG---GEEEEEEEEETTTH
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhhchh---hCCEEEEEEeCccc
Confidence 13456899999998765555555533222 24688999999754
No 387
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.12 E-value=0.02 Score=62.15 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
..+++.|++|+|||+++..++..+.++ |.+|++++++.+.......+. . + .. ....+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~---~--~-----------~~---~~~~~~~ 197 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALR---N--N-----------KM---EEFKEKY 197 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHH---c--C-----------CH---HHHHHHH
Confidence 358899999999999999999998876 789999987654322222211 0 0 01 1122233
Q ss_pred HhCCCcEEEEeCCCCCccc
Q 008282 262 KKKNVDVVIVDTAGRLQID 280 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d 280 (571)
..+|+++||=...+...
T Consensus 198 --~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 198 --RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred --HhCCEEEEehhhhhcCC
Confidence 46899999998776543
No 388
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.12 E-value=0.0017 Score=63.82 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
.|+++|++||||||+...|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~ 21 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT 21 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 48899999999999997774
No 389
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.13 Score=57.58 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..+|..+-
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999988765
No 390
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.12 E-value=0.0013 Score=61.26 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+|+||||++..|.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 458899999999999997763
No 391
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.11 E-value=0.0046 Score=59.62 Aligned_cols=88 Identities=24% Similarity=0.257 Sum_probs=52.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc--hhHHHHHHHhhhccCCceecCCCCC-----CH---HH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGTEV-----KP---SQ 252 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R--p~a~dqL~~~~~~~gv~v~~~~~~~-----~p---~~ 252 (571)
+.|.+++| +|.||||.+..+|...+.+|++|+++-.---. .+-..-+. ..++.+...+... ++ ..
T Consensus 6 Gli~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~----~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFE----PHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHH----hcCcEEEECCCCCeecCCCcHHHHH
Confidence 44444444 99999999999999999999999888642211 12111221 1244443332211 11 12
Q ss_pred HHHHHHHHH----HhCCCcEEEEeCCC
Q 008282 253 IAKQGLEEA----KKKNVDVVIVDTAG 275 (571)
Q Consensus 253 v~~~~l~~~----~~~~~DvIIIDTpG 275 (571)
.++++++.+ ....||+||+|-..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 344444443 34789999999854
No 392
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.10 E-value=0.0056 Score=65.05 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=59.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
-|+|+|.++|||||+..+|.. .++. |+.-+|. +.....++ +.. .+
T Consensus 160 dVglVG~PNaGKSTLln~ls~------a~~~-va~ypfT--------T~~p~~G~--v~~------------------~~ 204 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSA------AKPK-IADYPFT--------TLHPNLGV--VRV------------------DD 204 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHc------CCCc-cCCCCCc--------eeCceEEE--EEe------------------CC
Confidence 488999999999999988752 2222 2111221 11111111 100 03
Q ss_pred CCcEEEEeCCCCCccc---HHHHHHHHHHHhhhCCceEEEEEeCcch---HHH---HHHHHHhhhhc--CeeEEEEccCC
Q 008282 265 NVDVVIVDTAGRLQID---KAMMDELKDVKRVLNPTEVLLVVDAMTG---QEA---AALVTTFNIEI--GITGAILTKLD 333 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d---~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a---~~~~~~f~~~~--~i~GVIlNKlD 333 (571)
...++|+|+||..... ..+-.. -+..+-..+.+++|+|++.. ++. ...+..+...+ ...-||+||+|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~--flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHR--FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHH--HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 4579999999986321 112111 11112234778999998632 222 22223333221 23458999999
Q ss_pred CC
Q 008282 334 GD 335 (571)
Q Consensus 334 ~~ 335 (571)
..
T Consensus 283 L~ 284 (335)
T PRK12299 283 LL 284 (335)
T ss_pred cC
Confidence 64
No 393
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0092 Score=58.91 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.|.++|.+||||||++..||..|.+++.+|..+..|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 588999999999999999999999999999988886
No 394
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.10 E-value=0.0021 Score=60.61 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhhh---cC-eeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIE---IG-ITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~~---~~-i~GVIlNKlD~~ 335 (571)
+++.+.|+||||.... ..+. .......+.+++|+|++.... +......+... .+ ..-+|.||.|..
T Consensus 41 ~~~~~~i~D~~G~~~~-----~~~~-~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 41 DKYEVCIFDLGGGANF-----RGIW-VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred CCEEEEEEECCCcHHH-----HHHH-HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 4678999999996321 1110 111234688899999865432 22222222111 11 245889999964
No 395
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.10 E-value=0.0055 Score=58.72 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+|+||||++..|+
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~ 45 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALT 45 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHh
Confidence 458999999999999998886
No 396
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.09 E-value=0.013 Score=66.23 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=75.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCC--eEEEEeccCCchhHHHHHHHhhhccCCceec-----CC--C-------
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPVYT-----AG--T------- 246 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~--kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~-----~~--~------- 246 (571)
..||+++|-+|+||||-. +.||-..|| +=++.++-+.|.+|+.-.+..++.+|+++-. .. .
T Consensus 371 n~vvvivgETGSGKTTQl---~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~ 447 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQL---AQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTK 447 (1042)
T ss_pred CcEEEEEecCCCCchhhh---HHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCcee
Confidence 358999999999999965 566666553 3356667788888887777777777554211 00 0
Q ss_pred --CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCccc-HHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 247 --EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID-KAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 247 --~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d-~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
.....-++++.+..-....|.+||+|-+---..+ +-++.-++.+..-- .|--++|.+|+..
T Consensus 448 IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larR-rdlKliVtSATm~ 511 (1042)
T KOG0924|consen 448 IKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-RDLKLIVTSATMD 511 (1042)
T ss_pred EEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-ccceEEEeecccc
Confidence 0111224566665544578999999987432222 33444444443332 3666888888654
No 397
>PRK08840 replicative DNA helicase; Provisional
Probab=97.09 E-value=0.16 Score=56.52 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHHH--HHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQI--AKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v--~~~~ 257 (571)
+...+++.|.+|+|||+++.++|...+ ++|++|++++++.-.......+ .+...+++...... ..+..+. +..+
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a 293 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRM--LASLSRVDQTKIRTGQLDDEDWARISST 293 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHH--HHhhCCCCHHHHhcCCCCHHHHHHHHHH
Confidence 356888999999999999999999887 4699999999986544333332 33344454322211 2333332 2344
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
+..+. ....+.|-|+|+.. . ..+...+..+.... +..-++|||-
T Consensus 294 ~~~l~-~~~~l~I~d~~~~t-i-~~i~~~~r~~~~~~-~~~~lvvIDY 337 (464)
T PRK08840 294 MGILM-EKKNMYIDDSSGLT-P-TEVRSRARRIAREH-GGLSMIMVDY 337 (464)
T ss_pred HHHHH-hcCCEEEECCCCCC-H-HHHHHHHHHHHHhc-CCCCEEEEcc
Confidence 44442 23456666776643 2 13333333333221 1123677774
No 398
>PRK05642 DNA replication initiation factor; Validated
Probab=97.09 E-value=0.0027 Score=63.90 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..+.+.|++|+|||.++..++..+.++|++|.+++++-+-. . . ...++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~--------~----------------~----~~~~~~~-- 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD--------R----------------G----PELLDNL-- 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh--------h----------------h----HHHHHhh--
Confidence 46889999999999999999999888899999888653210 0 0 1123333
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
.++|+++||=-+....+.....++-.+..........+++-+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits 137 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAA 137 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeC
Confidence 467999999887664433333445444443322233344444
No 399
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.09 E-value=0.0041 Score=70.84 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
+|+++|..++||||++.+|. |.. .|.+... . ..|+.+-..... +...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt------g~~-----~d~~~eE---~------~rGiTid~~~~~-------------~~~~ 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT------GIA-----ADRLPEE---K------KRGMTIDLGFAY-------------FPLP 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh------Ccc-----CcCChhH---h------cCCceEEeEEEE-------------EEeC
Confidence 68899999999999998885 322 2322110 0 111111000000 0113
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCee--EEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGIT--GAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~--GVIlNKlD~~~ 336 (571)
++.+.||||||.- .+...+ +..+...|.+++|+|+..+ +. .+.+... ...++. -|++||+|...
T Consensus 49 ~~~v~~iDtPGhe----~f~~~~--~~g~~~aD~aILVVDa~~G~~~qT-~ehl~il-~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 49 DYRLGFIDVPGHE----KFISNA--IAGGGGIDAALLVVDADEGVMTQT-GEHLAVL-DLLGIPHTIVVITKADRVN 117 (581)
T ss_pred CEEEEEEECCCHH----HHHHHH--HhhhccCCEEEEEEECCCCCcHHH-HHHHHHH-HHcCCCeEEEEEECCCCCC
Confidence 4678999999953 222222 2223456899999999753 32 2222211 233443 57899999753
No 400
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.09 E-value=0.0026 Score=60.84 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|++||||||++..|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 356999999999999997764
No 401
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.0015 Score=58.12 Aligned_cols=69 Identities=32% Similarity=0.432 Sum_probs=45.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~ 265 (571)
|++.|++|+||||++..+|.++ |..+.-+++...... ...+....+...+..+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~--------------------~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS--------------------YAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS--------------------STTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc--------------------cccccccccccccccccccc
Confidence 6789999999999999998876 566766665422100 11223444556666665444
Q ss_pred -CcEEEEeCCCCC
Q 008282 266 -VDVVIVDTAGRL 277 (571)
Q Consensus 266 -~DvIIIDTpG~l 277 (571)
..+++||-.-.+
T Consensus 58 ~~~vl~iDe~d~l 70 (132)
T PF00004_consen 58 KPCVLFIDEIDKL 70 (132)
T ss_dssp TSEEEEEETGGGT
T ss_pred cceeeeeccchhc
Confidence 688999875443
No 402
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.08 E-value=0.00072 Score=64.39 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=35.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
+.|+.|+|..||||||++.+|...|..+|++|++|-.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 469999999999999999999999999999999998653
No 403
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.08 E-value=0.0044 Score=62.41 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..+.+.|++|+|||+++..++..+.++|++|.++.+|..... ..+.++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~----------------------------~~~~~~~~-- 95 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF----------------------------VPEVLEGM-- 95 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh----------------------------hHHHHHHh--
Confidence 368899999999999999999998888999998887631100 00112222
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHH
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDV 290 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i 290 (571)
..+|+++||=......+.....++-.+
T Consensus 96 ~~~dlliiDdi~~~~~~~~~~~~lf~l 122 (235)
T PRK08084 96 EQLSLVCIDNIECIAGDELWEMAIFDL 122 (235)
T ss_pred hhCCEEEEeChhhhcCCHHHHHHHHHH
Confidence 357999999988776544444444333
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.08 E-value=0.0031 Score=58.28 Aligned_cols=37 Identities=38% Similarity=0.659 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a 226 (571)
+++++|++||||||++..|+..+ ...+++.|.++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~ 37 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPA 37 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHH
Confidence 47899999999999999888764 23578999998653
No 405
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.074 Score=60.62 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
-+..++|+|+.|+||||++..||..+.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 366889999999999999999998765
No 406
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0015 Score=62.25 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
+++++++|.+||||||++..+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999996666555
No 407
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.07 E-value=0.00079 Score=76.74 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.+++.|+|..|+||||++.+|...|.++|++|++|..|-
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 569999999999999999999999999999999999843
No 408
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.07 E-value=0.0027 Score=56.97 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+|+||||++..|.
T Consensus 3 ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999997775
No 409
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.07 E-value=0.0044 Score=61.14 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=33.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+++.||.|+||||.+..+-.+...-|+++-+|..|+-
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA 42 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA 42 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHH
Confidence 5667999999999999999999999999999999973
No 410
>PRK04213 GTP-binding protein; Provisional
Probab=97.07 E-value=0.0071 Score=58.49 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|.+||||||+...|.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~ 30 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELT 30 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999998874
No 411
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0051 Score=62.89 Aligned_cols=80 Identities=28% Similarity=0.433 Sum_probs=55.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+.-+++.|++|+|||.++++||..+.+.|.+|+++.+ |..+.+++..-.. . .... .....+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~----~el~~~Lk~~~~~----------~-~~~~---~l~~~l- 165 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA----PDLLSKLKAAFDE----------G-RLEE---KLLREL- 165 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH----HHHHHHHHHHHhc----------C-chHH---HHHHHh-
Confidence 4579999999999999999999999988999998874 3444444421110 0 0111 112223
Q ss_pred hCCCcEEEEeCCCCCcccHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKA 282 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~ 282 (571)
..+|++|||=-|..+.+..
T Consensus 166 -~~~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 166 -KKVDLLIIDDIGYEPFSQE 184 (254)
T ss_pred -hcCCEEEEecccCccCCHH
Confidence 5899999999888765543
No 412
>PRK01184 hypothetical protein; Provisional
Probab=97.05 E-value=0.0013 Score=63.12 Aligned_cols=36 Identities=36% Similarity=0.607 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.+|+++|++|+||||++ .+ +.+.|..+. ...|..|.
T Consensus 2 ~~i~l~G~~GsGKsT~a-~~---~~~~g~~~i-~~~d~lr~ 37 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFS-KI---AREMGIPVV-VMGDVIRE 37 (184)
T ss_pred cEEEEECCCCCCHHHHH-HH---HHHcCCcEE-EhhHHHHH
Confidence 47999999999999975 34 345576652 22365554
No 413
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.04 E-value=0.0072 Score=64.08 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.++|||||+...|.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt 178 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVS 178 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHh
Confidence 358899999999999998885
No 414
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.04 E-value=0.00074 Score=67.44 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--cCCeEEEEeccCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~--~G~kVlLVd~D~~R 223 (571)
||+++|++||||||++..|+..|.. .+.+|.+|..|-|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5889999999999999999998875 56789999999764
No 415
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.03 E-value=0.0032 Score=58.04 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=36.6
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhh-----hcCe-eEEEEccCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI-----EIGI-TGAILTKLDG 334 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~-----~~~i-~GVIlNKlD~ 334 (571)
.++.+.|+||||...... +. .. .....+.+++|+|+...... ......+.. ..++ .-+|+||+|.
T Consensus 43 ~~~~~~l~Dt~G~~~~~~-~~---~~--~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRG-LW---EH--YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred CCEEEEEEECCCCHhhHH-HH---HH--HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 467789999999753211 11 11 12246889999999755321 111222211 1122 4579999996
Q ss_pred C
Q 008282 335 D 335 (571)
Q Consensus 335 ~ 335 (571)
.
T Consensus 117 ~ 117 (162)
T cd04157 117 P 117 (162)
T ss_pred c
Confidence 4
No 416
>PRK06761 hypothetical protein; Provisional
Probab=97.02 E-value=0.014 Score=60.59 Aligned_cols=41 Identities=32% Similarity=0.632 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEE-EeccCCch
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCML-VAGDVYRP 224 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlL-Vd~D~~Rp 224 (571)
++|+|+|++|+||||++..|+..|...|.+|.+ .+.|.++|
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p 45 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHP 45 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCc
Confidence 589999999999999999999999888988865 45565454
No 417
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.01 E-value=0.0051 Score=57.89 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|++||||||++..+.
T Consensus 4 ki~vvG~~~vGKTsli~~~~ 23 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFC 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998775
No 418
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.01 E-value=0.0019 Score=75.58 Aligned_cols=111 Identities=21% Similarity=0.347 Sum_probs=59.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+|.+|+++|..++||||++..|. +-+|. +.. ++ + .....+. +. +
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~e-~~-G-------IT~~iga--~~-----------------v 332 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AGE-AG-G-------ITQHIGA--YQ-----------------V 332 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH------hCCcc--ccc-cC-c-------eeeeccE--EE-----------------E
Confidence 56689999999999999997773 12221 110 00 0 0001111 10 1
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.+.++.+.|+||||...+.... . ..+-..|.++||+|+..+ ......+.. ....++ .-|++||+|..
T Consensus 333 ~~~~~~ItfiDTPGhe~F~~m~----~--rga~~aDiaILVVdAddGv~~qT~e~i~~-a~~~~vPiIVviNKiDl~ 402 (787)
T PRK05306 333 ETNGGKITFLDTPGHEAFTAMR----A--RGAQVTDIVVLVVAADDGVMPQTIEAINH-AKAAGVPIIVAINKIDKP 402 (787)
T ss_pred EECCEEEEEEECCCCccchhHH----H--hhhhhCCEEEEEEECCCCCCHhHHHHHHH-HHhcCCcEEEEEECcccc
Confidence 1245779999999975432111 1 112235788999998654 122222221 112233 45889999964
No 419
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.00 E-value=0.0027 Score=72.45 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=51.3
Q ss_pred CCCcEEEEeCCCCCcccHHHHHH-H-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCChh-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSRGG- 339 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~e-L-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~~g- 339 (571)
++..+.++||||.........+| + ......-.+|.+++|+|++..+..........+ .++ .-+++||+|...+.+
T Consensus 39 ~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~-~~~PiIIVlNK~Dl~~~~~i 117 (591)
T TIGR00437 39 QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLE-LGIPMILALNLVDEAEKKGI 117 (591)
T ss_pred CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHh-cCCCEEEEEehhHHHHhCCC
Confidence 35678999999975432111111 1 111122256889999999765433333322222 232 458899999653322
Q ss_pred --HHHHHHHHhCCCeEEEe
Q 008282 340 --AALSVKEVSGKPIKLVG 356 (571)
Q Consensus 340 --~~lsi~~~~g~PI~fig 356 (571)
....+.+..|.|+.++.
T Consensus 118 ~~d~~~L~~~lg~pvv~tS 136 (591)
T TIGR00437 118 RIDEEKLEERLGVPVVPTS 136 (591)
T ss_pred hhhHHHHHHHcCCCEEEEE
Confidence 23456667888886544
No 420
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.00 E-value=0.0016 Score=60.82 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=15.0
Q ss_pred EEcCCCCcHHHHHHHHH
Q 008282 188 LAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 188 ivG~~GvGKTTtaakLA 204 (571)
++|++||||||+...|+
T Consensus 1 iiG~~~~GKStll~~l~ 17 (176)
T cd01881 1 LVGLPNVGKSTLLNALT 17 (176)
T ss_pred CCCCCCCcHHHHHHHHh
Confidence 47999999999997776
No 421
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.99 E-value=0.0063 Score=56.35 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~ 21 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFV 21 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999998775
No 422
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.99 E-value=0.0034 Score=57.99 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|++||||||++..|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV 22 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999997775
No 423
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.99 E-value=0.0085 Score=55.99 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhh---hcCeeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~---~~~i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||.... ..+. ....-..+.+++|+|........ ........ .....-+|.||+|....
T Consensus 49 ~~~~~l~Dt~g~~~~-----~~~~-~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 49 RVKLQIWDTAGQERY-----RTIT-TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEEEEEEECCChHHH-----HHHH-HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 467899999995321 1111 11122457788999986543222 11122211 11124588899996422
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 008282 338 ---GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~ 353 (571)
......++...+.|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 123 VVSSERGRQLADQLGFEFF 141 (165)
T ss_pred ccCHHHHHHHHHHcCCEEE
Confidence 2333445556666653
No 424
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.99 E-value=0.003 Score=60.64 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
+++++|++||||||++..|+..+ |.++.+++. ++++....+....|-..-+-.........+.. ..+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~----~~i~~~~- 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLA----ELLRADA- 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHH----HHHHhhc-
Confidence 68999999999999999998654 445555554 55555433344333332222222222222222 2222211
Q ss_pred CCCcEEEEeCCCC
Q 008282 264 KNVDVVIVDTAGR 276 (571)
Q Consensus 264 ~~~DvIIIDTpG~ 276 (571)
.+.++|+||+-..
T Consensus 75 ~~~~~VlID~Lt~ 87 (170)
T PRK05800 75 APGRCVLVDCLTT 87 (170)
T ss_pred CCCCEEEehhHHH
Confidence 3456788887544
No 425
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.99 E-value=0.0038 Score=58.86 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH---HHHhhhh--c--CeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFNIE--I--GITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~---~~~f~~~--~--~i~GVIlNKlD~~~ 336 (571)
.++.+.|+||||...... .. ... ....+.+++|+|.+..+...+. ...+... . ...-++.||.|...
T Consensus 41 ~~~~i~l~Dt~G~~~~~~-~~---~~~--~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 41 KNLKFTIWDVGGKHKLRP-LW---KHY--YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CCEEEEEEECCCChhcch-HH---HHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 467899999999643211 11 111 1235788999998654322222 2222111 1 12457889999653
No 426
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.98 E-value=0.0054 Score=57.74 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=36.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhh---hhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFN---IEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~---~~~~i~GVIlNKlD~~ 335 (571)
.++.+.|+||||...... +.. . ..-..+.+++|+|++..... ...+..+. ...+ .-+|.||.|..
T Consensus 42 ~~~~l~i~Dt~G~~~~~~-~~~---~--~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~ 112 (164)
T cd04162 42 QDAIMELLEIGGSQNLRK-YWK---R--YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLP 112 (164)
T ss_pred CCeEEEEEECCCCcchhH-HHH---H--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCc
Confidence 467899999999753211 111 1 12235888999998665322 22222222 1222 34889999954
No 427
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.98 E-value=0.0074 Score=69.48 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
+++|.|++|+||||+++.++..+.++|++|++++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6779999999999999999999989999998776
No 428
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.98 E-value=0.0023 Score=59.20 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+||||||++..|.
T Consensus 3 i~v~G~~~vGKTsli~~l~ 21 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFV 21 (161)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998875
No 429
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.97 E-value=0.0023 Score=74.36 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.++.+.|+||||.-. +...... .+...|.++||+|+..+ ....+.+.... ..++ .-|++||+|..
T Consensus 293 ~~~kItfiDTPGhe~----F~~mr~r--g~~~aDiaILVVDA~dGv~~QT~E~I~~~k-~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 293 ENQKIVFLDTPGHEA----FSSMRSR--GANVTDIAILIIAADDGVKPQTIEAINYIQ-AANVPIIVAINKIDKA 360 (742)
T ss_pred CceEEEEEECCcHHH----HHHHHHH--HHHHCCEEEEEEECcCCCChhhHHHHHHHH-hcCceEEEEEECCCcc
Confidence 357899999999632 2111111 12235889999998654 22222222222 2223 45889999964
No 430
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.97 E-value=0.00086 Score=65.21 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
+|+++|++||||||++..|+..+ .+.++.++.+|.|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 58899999999999999999888 56688999999764
No 431
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.97 E-value=0.0012 Score=68.68 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=36.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D~~R 223 (571)
+.|.+|+|+|++||||||++..|...+.+. +.+|.++..|.|-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 468899999999999999999888877743 4579999999765
No 432
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.97 E-value=0.0028 Score=72.24 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
+|.+|+++|..|+||||+..+|.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~ 27 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIR 27 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45589999999999999998884
No 433
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.96 E-value=0.0085 Score=58.29 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..+.
T Consensus 7 ~kivvvG~~~vGKTsli~~l~ 27 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999997775
No 434
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.083 Score=60.78 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK 209 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~ 209 (571)
+..++|+|+.|+||||++..||..|--
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 567899999999999999999987753
No 435
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.95 E-value=0.0044 Score=57.43 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=36.3
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHh-hh---hcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF-NI---EIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f-~~---~~~i~GVIlNKlD~~ 335 (571)
.+..+.|+||||........ .. ....++.+++|+|+...... ......+ .. .-...-+|+||+|..
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~----~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYW----RC--YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred CCEEEEEEECCCCHHHHHHH----HH--HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 45688999999975321110 11 11246888999998654322 1222211 11 112345899999964
No 436
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.94 E-value=0.0074 Score=56.52 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..+.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~ 24 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFS 24 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999997775
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.94 E-value=0.0012 Score=53.55 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
+|+++|.+|+||||++..|+..| .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47889999999999999999988 6778887765
No 438
>PRK13695 putative NTPase; Provisional
Probab=96.94 E-value=0.017 Score=55.04 Aligned_cols=31 Identities=42% Similarity=0.542 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEE
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVl 215 (571)
.|+++|.+|+||||++..++..+...|.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4789999999999999999988887787764
No 439
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.93 E-value=0.0007 Score=63.48 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 332 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKl 332 (571)
..+++||||||....+.....-..... -..+.+++|+++... .+.....+.........-+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYL--PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHH--STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhh--ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999998543221111111121 235778888888542 333333333444445567888884
No 440
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.14 Score=60.62 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..||..|-
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 56789999999999999999998775
No 441
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.078 Score=60.47 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..||.++.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 56789999999999999999998875
No 442
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.91 E-value=0.0055 Score=58.82 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=46.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc-CCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D-~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
+++++|.+|||||+++.+++.. .|.++++++.. .+-..-.+....|-..-+...... ..+.++ .+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~---E~~~~l-~~~l~~~-- 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI---ETPRDL-VSALKEL-- 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe---ecHHHH-HHHHHhc--
Confidence 3688999999999999999755 57788777654 222222222222322222222211 112222 2334332
Q ss_pred CCCcEEEEeCCCC
Q 008282 264 KNVDVVIVDTAGR 276 (571)
Q Consensus 264 ~~~DvIIIDTpG~ 276 (571)
...++|+|||-+.
T Consensus 72 ~~~~~VLIDclt~ 84 (169)
T cd00544 72 DPGDVVLIDCLTL 84 (169)
T ss_pred CCCCEEEEEcHhH
Confidence 2578999999654
No 443
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.91 E-value=0.011 Score=56.33 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~R 223 (571)
+|+++|++||||||++..||..+ | +..++. |..|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECChHHH
Confidence 58899999999999999998765 4 334554 6655
No 444
>PRK06921 hypothetical protein; Provisional
Probab=96.90 E-value=0.011 Score=60.86 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEec
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG 219 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~ 219 (571)
..++|.|++|+|||+++..+|..+.++ |++|++++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 468999999999999999999999887 999998875
No 445
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.89 E-value=0.25 Score=57.24 Aligned_cols=27 Identities=44% Similarity=0.581 Sum_probs=23.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK 209 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~ 209 (571)
+..++|+|+.|+||||++..||..|.-
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 568999999999999999999987753
No 446
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.89 E-value=0.0029 Score=60.22 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhh-h-hc--CeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFN-I-EI--GITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~-~-~~--~i~GVIlNKlD~~ 335 (571)
+++.+.|+||||..... .+ .... ..+.+.+++|+|.+... ++......+. . .. ....||.||.|..
T Consensus 55 ~~~~l~l~D~~G~~~~~-~~---~~~~--~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKIR-PL---WRHY--YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhhH-HH---HHHH--hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 45789999999974321 11 1111 23457889999986542 2222222221 1 11 2346899999964
No 447
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.87 E-value=0.0034 Score=68.71 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANY 206 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~ 206 (571)
+...|+++|..++||||++..|...
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~ 30 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYK 30 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHH
Confidence 3467899999999999999888753
No 448
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.87 E-value=0.0027 Score=63.12 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=29.1
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHH--HHHHhcCCeE
Q 008282 176 LVFAKSRPTVILLAGLQGVGKTTVSAKLA--NYLKKQGKSC 214 (571)
Q Consensus 176 l~~~~~~~~VI~ivG~~GvGKTTtaakLA--~~La~~G~kV 214 (571)
+.+....+++++++|++|+||||+...++ ..++..|.-|
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 33434335899999999999999999988 4456667533
No 449
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.85 E-value=0.0028 Score=59.36 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH-------HHHhhhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL-------VTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~-------~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
..+++.|+||||......... .. ....+.+++|+|.......... ++.+.... ..-+|.||+|...
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLA----AE--IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV-PIILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHh----hh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhccc
Confidence 467899999999753222111 11 2345778999998665433221 11111122 2357889999643
No 450
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.11 Score=58.67 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..||.+|.
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999998775
No 451
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.84 E-value=0.0078 Score=55.48 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=35.0
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhhhcC--e-eEEEEccCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIEIG--I-TGAILTKLDG 334 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~~~~--i-~GVIlNKlD~ 334 (571)
+.+.|+||||.... .. ..... .-..+.+++|.|....+. .......+....+ + .-++.||+|.
T Consensus 49 ~~l~~~D~~G~~~~-~~---~~~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERF-RS---LIPSY--IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHH-HH---HHHHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 56899999996421 11 11111 123577889999865432 2222223322222 3 4578999997
No 452
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.84 E-value=0.006 Score=58.60 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHH-HHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh--h--cCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI--E--IGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL-~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~--~--~~i~GVIlNKlD~~ 335 (571)
+++.+.|+||||.... ..+ ... ..+.+.+++|+|++....... ....+.. . -...-||.||+|..
T Consensus 59 ~~~~~~i~D~~Gq~~~-----~~~~~~~--~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 59 KNISFTVWDVGGQDKI-----RPLWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred CCEEEEEEECCCCHHH-----HHHHHHH--hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 4678999999996321 111 111 224588999999975533222 2222211 1 11245788999964
Q ss_pred CChhHHHHHHHHhCC
Q 008282 336 SRGGAALSVKEVSGK 350 (571)
Q Consensus 336 ~~~g~~lsi~~~~g~ 350 (571)
... ....+.+.++.
T Consensus 132 ~~~-~~~~~~~~l~l 145 (181)
T PLN00223 132 NAM-NAAEITDKLGL 145 (181)
T ss_pred CCC-CHHHHHHHhCc
Confidence 332 12334444543
No 453
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.094 Score=56.30 Aligned_cols=26 Identities=46% Similarity=0.631 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
|..++|+|+.|+||||++..+|..+-
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 56789999999999999999998764
No 454
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.84 E-value=0.0038 Score=71.09 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
+|.+|++.|..++||||+..+|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~ 108 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIR 108 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45589999999999999997773
No 455
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.84 E-value=0.0045 Score=59.69 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+||||||++..+.
T Consensus 3 i~vvG~~~vGKTSli~~~~ 21 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFK 21 (191)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7888999999999997664
No 456
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.014 Score=60.37 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=91.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
-.|..+|.-.-||||++++|...|++.|.... .+-|.-+.+- .-+..|+.+-...-+ +..
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~-~~y~~id~aP------eEk~rGITIntahve-------------yet 72 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEA-KAYDQIDNAP------EEKARGITINTAHVE-------------YET 72 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccc-cchhhhccCc------hHhhcCceeccceeE-------------Eec
Confidence 45777899999999999999999998873332 1111111110 112234433221111 112
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCe--eEEEEccCCCCCCh
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGI--TGAILTKLDGDSRG 338 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i--~GVIlNKlD~~~~~ 338 (571)
.+-.|..|||||.-..-.++ +..+.+.|..+||+.|..| |.-..++- ..++++ .-+++||+|--...
T Consensus 73 ~~rhyahVDcPGHaDYvKNM------ItgAaqmDgAILVVsA~dGpmPqTrEHiLl--arqvGvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPMPQTREHILL--ARQVGVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred CCceEEeccCCChHHHHHHH------hhhHHhcCccEEEEEcCCCCCCcchhhhhh--hhhcCCcEEEEEEecccccCcH
Confidence 45678999999965322222 2233345889999988655 32222211 223444 45788999965433
Q ss_pred hHH-------HHHHHHhCCC--eEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHh
Q 008282 339 GAA-------LSVKEVSGKP--IKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM 393 (571)
Q Consensus 339 g~~-------lsi~~~~g~P--I~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l 393 (571)
..+ ..+...++.| ..++-.|.....++--.. +...+.+|++...+++
T Consensus 145 ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~--------~~~~i~eLm~avd~yi 200 (394)
T COG0050 145 ELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAK--------WEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcc--------hHHHHHHHHHHHHhcC
Confidence 222 2344555655 223444444444332101 1234555655555555
No 457
>PLN02796 D-glycerate 3-kinase
Probab=96.83 E-value=0.0044 Score=65.83 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.+|.+|+|+|++||||||++..|+..+...|.++..|..|-|-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3578999999999999999999999988778888888887654
No 458
>PLN02200 adenylate kinase family protein
Probab=96.83 E-value=0.0065 Score=61.29 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=30.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 180 ~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
...|.+|+++|++||||||++..||..+ |... +-..|..|.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~---g~~h-is~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF---GFKH-LSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh---CCeE-EEccHHHHH
Confidence 4467899999999999999999998765 4432 444476663
No 459
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.82 E-value=0.0026 Score=59.30 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..++++|.+||||||++.+|.
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999998875
No 460
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.82 E-value=0.0057 Score=57.84 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh---c-CeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE---I-GITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~---~-~i~GVIlNKlD~~ 335 (571)
.++.+.|+||||..... .+. .. .....+.+++|+|++...... ......... . ...-+|.||+|..
T Consensus 51 ~~~~~~l~Dt~G~~~~~-~~~---~~--~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 51 KNVKFNVWDVGGQDKIR-PLW---RH--YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred CCEEEEEEECCCCHHHH-HHH---HH--HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 45779999999974221 111 11 122468899999987643222 222222111 1 1245888999964
No 461
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.043 Score=61.60 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=57.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v~~~~l~~ 260 (571)
|..++|+|+.|+||||++..||..|-- .+.... -|... ... ..+. .+.. .+++..+. .....+-+++.++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~--pCg~C-~~C-~~i~-~g~~--~d~~eidaas~~~v~~iR~l~~~ 110 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN--PCNDC-ENC-REID-EGRF--PDLFEVDAASRTKVEDTRELLDN 110 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc--cCCCC-HHH-HHHh-cCCC--ceEEEEcccccCCHHHHHHHHHH
Confidence 567899999999999999999988753 221110 11110 000 0000 1111 12222111 11223334555544
Q ss_pred HH----hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 261 AK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 261 ~~----~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
+. ...|.++|||-+-.+.. .....|...... .|..+++++-++
T Consensus 111 ~~~~p~~~~~kV~iIDE~~~ls~--~a~naLLk~LEe-pp~~~~fIlatt 157 (509)
T PRK14958 111 IPYAPTKGRFKVYLIDEVHMLSG--HSFNALLKTLEE-PPSHVKFILATT 157 (509)
T ss_pred HhhccccCCcEEEEEEChHhcCH--HHHHHHHHHHhc-cCCCeEEEEEEC
Confidence 32 24689999999988763 223333333332 245566665443
No 462
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.82 E-value=0.0018 Score=70.31 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=37.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.+|.||+|+|.+|+||||++..|...+...|.++..|..|-|-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3689999999999999999999988887778999999988654
No 463
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.82 E-value=0.0052 Score=56.76 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=44.1
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHH------HHhhhhcCe-eEEEEccCCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV------TTFNIEIGI-TGAILTKLDGDSR 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~------~~f~~~~~i-~GVIlNKlD~~~~ 337 (571)
.+++.|+||||.... ........ -..+.+++|+|....+...... ..+....++ .-+|.||.|....
T Consensus 48 ~~~~~l~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 48 KVKLAIWDTAGQERF----RTLTSSYY--RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred EEEEEEEECCCchhh----hhhhHHHh--CCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 467899999995321 11111111 2357889999986554322221 122212222 3578899996522
Q ss_pred ---hhHHHHHHHHhCCCeEE
Q 008282 338 ---GGAALSVKEVSGKPIKL 354 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~f 354 (571)
...........+.|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ 141 (161)
T cd01863 122 EVTREEGLKFARKHNMLFIE 141 (161)
T ss_pred ccCHHHHHHHHHHcCCEEEE
Confidence 23344455555666543
No 464
>PRK04040 adenylate kinase; Provisional
Probab=96.82 E-value=0.0015 Score=63.69 Aligned_cols=31 Identities=39% Similarity=0.516 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeE
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSC 214 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kV 214 (571)
|.+|+++|.+|+||||++..|+..|. .+.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 57899999999999999999998875 24554
No 465
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.81 E-value=0.0078 Score=58.89 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA 204 (571)
|+++|.+||||||++..++
T Consensus 3 I~ivG~~~vGKTsLi~~~~ 21 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFL 21 (198)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999997765
No 466
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.32 Score=55.40 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..||..+-
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 56899999999999999999998875
No 467
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.14 Score=58.54 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+.-++|+|+.|+||||++..||..|-
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhC
Confidence 56799999999999999999998775
No 468
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.13 Score=58.94 Aligned_cols=118 Identities=22% Similarity=0.211 Sum_probs=58.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCe-EEEEeccCCc--hhHHHHHHHhhhccCCceecCCC-CCCHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKS-CMLVAGDVYR--PAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGL 258 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~k-VlLVd~D~~R--p~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v~~~~l 258 (571)
+..++|+|+.|+||||++..||..|--.+.. ..-++.++.. +.. ..+ ......+++..+. .....+.+++.+
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C-~~i---~~g~h~D~~eldaas~~~Vd~iReli 113 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC-RDI---DSGRFVDYTELDAASNRGVDEVQQLL 113 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH-HHH---HcCCCCceeecCcccccCHHHHHHHH
Confidence 5688999999999999999999887632210 0001111110 111 111 1111122222211 112334455555
Q ss_pred HHHH----hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 259 EEAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 259 ~~~~----~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
+.+. ...|.++|||-.-.+..+ ..+.|...... .|..+++++-++.
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh~Ls~~--a~NaLLKtLEE-PP~~~~fIL~Ttd 163 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVHMLTNT--AFNAMLKTLEE-PPEYLKFVLATTD 163 (618)
T ss_pred HHHHhCcccCCceEEEEEChhhCCHH--HHHHHHHhccc-CCCCeEEEEEECC
Confidence 5543 245899999999887532 23333222221 2455566655433
No 469
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.17 Score=54.09 Aligned_cols=29 Identities=38% Similarity=0.630 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQG 211 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G 211 (571)
|..++|.|++|+||||++..+|..+...+
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~ 67 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPG 67 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 56899999999999999999988876543
No 470
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.78 E-value=0.0046 Score=54.50 Aligned_cols=68 Identities=19% Similarity=0.077 Sum_probs=37.6
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHH-------HHhhhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV-------TTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~-------~~f~~~~~i~GVIlNKlD~~~ 336 (571)
.++++.++|+||........ .......+.+++|+|+.......... ......-...-+|+||+|...
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 36789999999965322111 11122357889999987653322211 111111122458899999654
Q ss_pred C
Q 008282 337 R 337 (571)
Q Consensus 337 ~ 337 (571)
.
T Consensus 117 ~ 117 (157)
T cd00882 117 E 117 (157)
T ss_pred c
Confidence 3
No 471
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.27 Score=56.25 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..||..+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999998875
No 472
>PRK08116 hypothetical protein; Validated
Probab=96.78 E-value=0.012 Score=60.70 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=54.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH-HhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV-ILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~-~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.-++|.|++|+|||.++..+|..+.++|++|++++... ....+. .+.. ....+. ...++.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~----ll~~i~~~~~~---------~~~~~~----~~~~~~l- 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ----LLNRIKSTYKS---------SGKEDE----NEIIRSL- 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH----HHHHHHHHHhc---------cccccH----HHHHHHh-
Confidence 35889999999999999999999998899999887532 122221 1110 001111 1233333
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELK 288 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~ 288 (571)
.++|++|||=-|...........+-
T Consensus 177 -~~~dlLviDDlg~e~~t~~~~~~l~ 201 (268)
T PRK08116 177 -VNADLLILDDLGAERDTEWAREKVY 201 (268)
T ss_pred -cCCCEEEEecccCCCCCHHHHHHHH
Confidence 5789999999886544333333333
No 473
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.77 E-value=0.0047 Score=57.77 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhh--h--cCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNI--E--IGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~--~--~~i~GVIlNKlD~~ 335 (571)
+.+.+.|+||||...... -... .....+.+++|+|++... ++......... . -...-++.||.|..
T Consensus 42 ~~~~~~l~D~~G~~~~~~----~~~~--~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 42 KNISFTVWDVGGQDKIRP----LWRH--YFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEECCCCHhHHH----HHHH--HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 456789999999632111 1111 123468899999986542 22221221111 1 12245889999964
No 474
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.12 Score=58.03 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+.-++|+|+.|+||||++..+|..+-
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998775
No 475
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.77 E-value=0.0095 Score=54.54 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..|.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999997775
No 476
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.76 E-value=0.0074 Score=57.98 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh----cCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE----IGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~----~~i~GVIlNKlD~~ 335 (571)
.++.+.|+||||.... ..+.. ......+.+++|+|++..... ......+... -...-||.||.|..
T Consensus 59 ~~~~~~l~D~~G~~~~-----~~~~~-~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKL-----RPLWR-HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred CCEEEEEEECCCCHhH-----HHHHH-HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 4678999999996321 11100 112345889999998654322 2222222111 12245788999964
No 477
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.76 E-value=0.0096 Score=62.53 Aligned_cols=79 Identities=28% Similarity=0.289 Sum_probs=54.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+.-+.+.|++|+|||.+++.+|..+.++|++|.++... ..+..+...-. . . . ..+.++.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~----~l~~~lk~~~~--------~--~-~----~~~~l~~l- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP----EFIRELKNSIS--------D--G-S----VKEKIDAV- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH----HHHHHHHHHHh--------c--C-c----HHHHHHHh-
Confidence 34688999999999999999999999999999988763 33344432110 0 0 1 12334444
Q ss_pred hCCCcEEEEeCCCCCcccHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKA 282 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~ 282 (571)
..+|++|||=-|.......
T Consensus 216 -~~~dlLiIDDiG~e~~s~~ 234 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSW 234 (306)
T ss_pred -cCCCEEEEecCCCccccHH
Confidence 5899999998887654433
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.76 E-value=0.0084 Score=58.02 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=58.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe-ccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA-GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd-~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
..+++++|++|+||||+...|+..+... .++..+. .+.+.. .+....++.+........+..-..+.+..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQL-------PHPNWVRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCC-------CCCCEEEEEEecCCCCCCCccCHHHHHHHH
Confidence 3489999999999999999888766543 3443332 111111 011111111111100001111122334444
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCce-EEEEEeCcchHHHHHHHH
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTE-VLLVVDAMTGQEAAALVT 316 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~-vlLVvda~~gq~a~~~~~ 316 (571)
...+.|+|+|+--... +....+. .+..-+. ++-.+.+.+..++...+.
T Consensus 97 lR~~pd~i~igEir~~----ea~~~~~---a~~tGh~g~~~T~Ha~s~~~~~~Rl~ 145 (186)
T cd01130 97 LRMRPDRIIVGEVRGG----EALDLLQ---AMNTGHPGGMTTIHANSAEEALTRLE 145 (186)
T ss_pred hccCCCEEEEEccCcH----HHHHHHH---HHhcCCCCceeeecCCCHHHHHHHHH
Confidence 4467899999876542 2222222 2222244 666777776666555444
No 479
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.76 E-value=0.0016 Score=60.62 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=35.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHH----hhhhc-Ce-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTT----FNIEI-GI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~----f~~~~-~i-~GVIlNKlD~~ 335 (571)
..+.+.++||||..... .+... .....+.+++|+|....+........ +.... ++ .-+|.||.|..
T Consensus 46 ~~~~l~~~D~~g~~~~~-----~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 46 KQVNLGLWDTAGQEEYD-----RLRPL-SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEEEEEEeCCCccccc-----ccchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 45679999999975321 11111 11235788999998664433222221 11111 22 35788999953
No 480
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.76 E-value=0.0094 Score=57.09 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~ 21 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFT 21 (188)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999997775
No 481
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.14 Score=57.13 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=57.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~v~~~~l~~ 260 (571)
|.-++|+|+.|+||||++.-+|..+-- .|..+ ++...- +.-.........+++..+. .....+.+++.++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----~pCg~C--~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~ 107 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTS-----DPCGTC--HNCISIKNSNHPDVIEIDAASNTSVDDIKVILEN 107 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----CCcccc--HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHH
Confidence 567999999999999999999887642 23211 111100 0000111112233332221 11223444555554
Q ss_pred HH----hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 261 AK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 261 ~~----~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
+. ...|.++|||-+-.+.. .....|....+- .|..+++++-++
T Consensus 108 ~~~~P~~~~~KVvIIDEah~Ls~--~A~NaLLK~LEe-Pp~~v~fIlatt 154 (491)
T PRK14964 108 SCYLPISSKFKVYIIDEVHMLSN--SAFNALLKTLEE-PAPHVKFILATT 154 (491)
T ss_pred HHhccccCCceEEEEeChHhCCH--HHHHHHHHHHhC-CCCCeEEEEEeC
Confidence 42 24678999999877653 222333222222 245555665443
No 482
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.75 E-value=0.019 Score=53.78 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..+.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~ 25 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFT 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999997774
No 483
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.74 E-value=0.007 Score=56.05 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh-cCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE-IGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~-~~i-~GVIlNKlD~~ 335 (571)
..+.+.|+||||.... ..+. ... ...++.+++|+|.+...... .....+... .++ .-+|.||.|..
T Consensus 50 ~~~~l~i~Dt~G~~~~-~~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 50 NTVELFIFDSAGQELY-SDMV---SNY--WESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred CEEEEEEEECCCHHHH-HHHH---HHH--hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 4578999999995321 1111 111 23468889999986553322 112222211 122 45789999964
No 484
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.72 E-value=0.013 Score=53.97 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH---HHHhh---hhcCeeEEEEccCCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL---VTTFN---IEIGITGAILTKLDGDSR 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~---~~~f~---~~~~i~GVIlNKlD~~~~ 337 (571)
..+++.|+||||.... ..+... ..-..+.+++|.|....+..... ...+. ..++ .-+|.||+|....
T Consensus 49 ~~~~~~i~D~~G~~~~-----~~~~~~-~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 121 (162)
T cd04106 49 EDVRLMLWDTAGQEEF-----DAITKA-YYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQ 121 (162)
T ss_pred CEEEEEEeeCCchHHH-----HHhHHH-HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccc
Confidence 3567999999995321 111111 11245778888888655322211 11222 1233 3478899996432
Q ss_pred ----hhHHHHHHHHhCCCeEEE
Q 008282 338 ----GGAALSVKEVSGKPIKLV 355 (571)
Q Consensus 338 ----~g~~lsi~~~~g~PI~fi 355 (571)
...+..++...+.|+..+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~~~ 143 (162)
T cd04106 122 AVITNEEAEALAKRLQLPLFRT 143 (162)
T ss_pred cCCCHHHHHHHHHHcCCeEEEE
Confidence 223344556667766433
No 485
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.72 E-value=0.0082 Score=65.53 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=36.5
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCe--eEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGI--TGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i--~GVIlNKlD~~~ 336 (571)
+.+.|+||||.. .+..++ +..+...|.+++|+|+..+ ......+... ...++ .-+|+||+|...
T Consensus 85 ~~i~liDtPG~~----~f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 85 RRVSFVDAPGHE----TLMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred cEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHcCCCcEEEEEEeecccc
Confidence 678999999953 233322 2222345888999999743 2222222222 22333 347789999653
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.71 E-value=0.023 Score=54.83 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=53.0
Q ss_pred cccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc-CCc---hhHHHHHHHhhhccCCcee--c-CCCCCC
Q 008282 177 VFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD-VYR---PAAIDQLVILGEQVGVPVY--T-AGTEVK 249 (571)
Q Consensus 177 ~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D-~~R---p~a~dqL~~~~~~~gv~v~--~-~~~~~~ 249 (571)
.+.-.+..+++++|++|+||||+...++ ...|. |.+...+ .++ ...+.|.. +.+..++.-. . .....+
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il---~~~G~-v~~~~~~~~~~~~~~~~~~q~~-~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGK-ARLISFLPKFSRNKLIFIDQLQ-FLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh---hcCCc-EEECCcccccccccEEEEhHHH-HHHHcCCCccccCCCcCcCC
Confidence 3333456799999999999999997663 23443 3222111 111 11222221 2233343211 1 111233
Q ss_pred HHHHHHHHHHHHHhCC--CcEEEEeCCCCCcccHHHHHHH
Q 008282 250 PSQIAKQGLEEAKKKN--VDVVIVDTAGRLQIDKAMMDEL 287 (571)
Q Consensus 250 p~~v~~~~l~~~~~~~--~DvIIIDTpG~l~~d~~l~~eL 287 (571)
..+.-+-++..+...+ .+++|+|-|-.. .|......+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~-LD~~~~~~l 128 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTG-LHQQDINQL 128 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCccc-CCHHHHHHH
Confidence 3344444444444466 899999988653 344433333
No 487
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.70 E-value=0.014 Score=69.19 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch-hHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP-AAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp-~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..++|+||+|+|||++|..||.+|-..+..+.-+|+.-|.. ..+..+ .|-|--.. ..+....+.+ .++
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l------~g~~~gyv--g~~~~~~l~~---~~~ 608 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL------IGSPPGYV--GYNEGGQLTE---AVR 608 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh------cCCCCccc--CcCccchHHH---HHH
Confidence 46789999999999999999988765445555555433321 111111 12211000 1111112222 333
Q ss_pred hCCCcEEEEeCCCCCc
Q 008282 263 KKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~ 278 (571)
...|.+||+|-.-..+
T Consensus 609 ~~p~~VvllDeieka~ 624 (821)
T CHL00095 609 KKPYTVVLFDEIEKAH 624 (821)
T ss_pred hCCCeEEEECChhhCC
Confidence 4688999999876654
No 488
>PTZ00301 uridine kinase; Provisional
Probab=96.69 E-value=0.0029 Score=62.88 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=33.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc-C-CeEEEEeccCCc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVYR 223 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~-G-~kVlLVd~D~~R 223 (571)
..+|+|+|.+||||||+|.+|+..+... | ..|.++..|-|-
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 3689999999999999999999887643 4 457788888763
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.69 E-value=0.002 Score=63.36 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.++.+|+|+|++|+||||++..|+..+.. ..+.++..|.|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 34689999999999999999999877654 46778888876
No 490
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.69 E-value=0.016 Score=53.38 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999987665
No 491
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.69 E-value=0.0069 Score=60.44 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=56.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.+.+.|++|+|||.+...++..+.+. +.+|.+++++.|-....+.+.. ... .+..+.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~---------------~~~----~~~~~~~- 95 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD---------------GEI----EEFKDRL- 95 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT---------------TSH----HHHHHHH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc---------------ccc----hhhhhhh-
Confidence 37789999999999999999988763 7899999988665544443321 011 1222333
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVK 291 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~ 291 (571)
..+|+++||-.-.+........++-.+.
T Consensus 96 -~~~DlL~iDDi~~l~~~~~~q~~lf~l~ 123 (219)
T PF00308_consen 96 -RSADLLIIDDIQFLAGKQRTQEELFHLF 123 (219)
T ss_dssp -CTSSEEEEETGGGGTTHHHHHHHHHHHH
T ss_pred -hcCCEEEEecchhhcCchHHHHHHHHHH
Confidence 6899999999877654443344443333
No 492
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.69 E-value=0.013 Score=59.38 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=53.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHH---HHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIA---KQGLE 259 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~---~~~l~ 259 (571)
+.+++++|++|+||||++..++..+...+ +.++..........+-+...+...|++.- ..+..... ...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~~~~~~~~~~~l~~i~~~lG~~~~----~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKLVNTRVDAEDLLRMVAADFGLETE----GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeeeeCCCCCHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHHH
Confidence 45799999999999999999987766433 22222111122223344455666666532 12222222 22222
Q ss_pred H-HHhCCCcEEEEeCCCCCcccHHHHHHHHHHH
Q 008282 260 E-AKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 291 (571)
Q Consensus 260 ~-~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~ 291 (571)
. ......-+++||=+-.+. ......+..+.
T Consensus 117 ~~~~~~~~~vliiDe~~~l~--~~~~~~l~~l~ 147 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT--PELLEELRMLS 147 (269)
T ss_pred HHHhCCCCeEEEEECcccCC--HHHHHHHHHHh
Confidence 2 223455688999876653 23344444443
No 493
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.55 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||++..+|..+-
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999988887764
No 494
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.68 E-value=0.0029 Score=71.74 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=38.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~R 223 (571)
+++.+|+|+|++|+||||++..||..|.. .|..+.++|.|..|
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 45789999999999999999999999986 78889999999764
No 495
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.68 E-value=0.0051 Score=70.78 Aligned_cols=44 Identities=30% Similarity=0.582 Sum_probs=40.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
+|.+|+++|.+|+||||++..|+..|...|..+.+++.|.+|..
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~ 502 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHG 502 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhc
Confidence 57899999999999999999999999888999999999998864
No 496
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.67 E-value=0.0048 Score=59.89 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=35.6
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH------HHHhhhhcCe-eEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~------~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
..+.|+||||..... .+... .....+.+++|+|.......... +..+....++ .-+|.||+|...
T Consensus 47 ~~l~i~D~~G~~~~~-----~~~~~-~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 47 LTLDILDTSGSYSFP-----AMRKL-SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEEECCCchhhh-----HHHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 578899999964321 11111 12245889999998655332211 1122211222 457889999643
No 497
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.66 E-value=0.026 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
.+|+++|++||||||++..|+..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.66 E-value=0.012 Score=65.92 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEE
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVl 215 (571)
+...++++|++|+||||++.-|+..+.-..-+|.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 4568999999999999999888766553322453
No 499
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.65 E-value=0.011 Score=54.89 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++.+|.
T Consensus 5 ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999998885
No 500
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.37 Score=55.52 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+..++|+|+.|+||||+|..||..+-
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999999998875
Done!