Query 008282
Match_columns 571
No_of_seqs 536 out of 4223
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 7.5E-91 2.5E-95 750.1 47.4 434 83-524 1-437 (443)
2 3kl4_A SRP54, signal recogniti 100.0 1.2E-86 4.3E-91 716.9 41.7 421 90-512 4-432 (433)
3 2ffh_A Protein (FFH); SRP54, s 100.0 1.4E-82 4.9E-87 684.2 43.9 419 84-515 1-419 (425)
4 2xxa_A Signal recognition part 100.0 2.9E-82 1E-86 684.8 46.3 428 84-514 1-432 (433)
5 2j37_W Signal recognition part 100.0 2.4E-80 8.3E-85 679.7 18.5 476 83-559 1-489 (504)
6 2v3c_C SRP54, signal recogniti 100.0 7.6E-76 2.6E-80 634.6 23.9 423 85-512 1-426 (432)
7 1j8m_F SRP54, signal recogniti 100.0 1.9E-44 6.4E-49 371.9 34.3 293 86-379 1-296 (297)
8 3e70_C DPA, signal recognition 100.0 2.8E-42 9.4E-47 360.3 31.1 298 82-380 5-326 (328)
9 1ls1_A Signal recognition part 100.0 1.5E-41 5.2E-46 349.8 35.4 295 84-380 1-295 (295)
10 1vma_A Cell division protein F 100.0 3E-41 1E-45 349.3 33.1 290 65-378 10-305 (306)
11 1zu4_A FTSY; GTPase, signal re 100.0 3.4E-40 1.2E-44 343.5 33.1 280 89-378 15-310 (320)
12 2yhs_A FTSY, cell division pro 100.0 1.7E-37 5.7E-42 337.6 35.4 272 102-381 220-497 (503)
13 2og2_A Putative signal recogni 100.0 3.4E-37 1.2E-41 325.2 35.0 289 83-378 55-359 (359)
14 1rj9_A FTSY, signal recognitio 100.0 6.6E-38 2.3E-42 324.0 26.1 284 83-378 2-303 (304)
15 3b9q_A Chloroplast SRP recepto 100.0 1.9E-34 6.4E-39 297.9 33.8 271 101-378 23-302 (302)
16 2jqe_A SRP54, signal recogniti 100.0 6.5E-38 2.2E-42 278.4 4.2 115 402-522 2-118 (119)
17 1hq1_A Signal recognition part 100.0 3.6E-37 1.2E-41 268.0 6.6 103 409-513 1-104 (105)
18 1mfq_C SRP54, signal recogniti 100.0 6.5E-37 2.2E-41 274.5 7.3 109 406-514 11-124 (129)
19 1qb2_A SRP54, human signal rec 100.0 1.7E-36 5.7E-41 265.7 7.6 104 409-512 1-109 (109)
20 2px0_A Flagellar biosynthesis 100.0 5.7E-33 2E-37 286.0 25.9 259 107-378 35-296 (296)
21 1dul_A Signal recognition part 99.9 8.4E-27 2.9E-31 187.3 6.8 66 445-512 4-69 (69)
22 4dzz_A Plasmid partitioning pr 99.6 1.3E-14 4.5E-19 138.6 18.3 151 184-352 2-161 (206)
23 1hyq_A MIND, cell division inh 99.6 1.2E-14 4E-19 145.0 16.8 161 184-353 3-193 (263)
24 3la6_A Tyrosine-protein kinase 99.6 1.3E-14 4.4E-19 148.4 16.9 148 182-337 91-269 (286)
25 2ph1_A Nucleotide-binding prot 99.6 1.2E-14 4.1E-19 145.7 15.8 165 183-353 18-223 (262)
26 3bfv_A CAPA1, CAPB2, membrane 99.6 2.3E-14 7.8E-19 145.3 17.3 147 182-336 81-258 (271)
27 1cp2_A CP2, nitrogenase iron p 99.6 7.7E-14 2.6E-18 139.5 20.0 165 184-353 2-205 (269)
28 3end_A Light-independent proto 99.6 1.4E-14 4.8E-19 148.3 14.4 163 181-353 39-241 (307)
29 1g3q_A MIND ATPase, cell divis 99.6 1.6E-14 5.4E-19 141.4 14.2 161 184-353 3-194 (237)
30 3cio_A ETK, tyrosine-protein k 99.6 3.2E-14 1.1E-18 146.2 16.1 148 182-337 103-281 (299)
31 3ea0_A ATPase, para family; al 99.6 1.1E-14 3.8E-19 143.0 12.2 162 182-353 3-202 (245)
32 3q9l_A Septum site-determining 99.6 7.8E-14 2.7E-18 138.2 17.4 162 184-353 3-208 (260)
33 2oze_A ORF delta'; para, walke 99.5 2.7E-14 9.2E-19 145.2 13.6 158 184-350 35-242 (298)
34 3fwy_A Light-independent proto 99.5 4.2E-14 1.5E-18 146.5 14.9 161 182-353 47-248 (314)
35 2afh_E Nitrogenase iron protei 99.5 1.1E-13 3.7E-18 140.5 17.5 165 184-353 3-208 (289)
36 3k9g_A PF-32 protein; ssgcid, 99.5 1.2E-13 4E-18 138.3 16.0 169 181-361 25-236 (267)
37 3kjh_A CO dehydrogenase/acetyl 99.5 8.8E-14 3E-18 136.4 14.2 164 186-361 3-221 (254)
38 1wcv_1 SOJ, segregation protei 99.5 1.6E-13 5.5E-18 137.0 13.1 162 182-352 5-201 (257)
39 1byi_A Dethiobiotin synthase; 99.5 1.1E-12 3.7E-17 127.4 17.2 166 184-353 2-200 (224)
40 3cwq_A Para family chromosome 99.4 1.8E-12 6E-17 126.0 16.3 143 185-352 2-152 (209)
41 3ug7_A Arsenical pump-driving 99.4 1.8E-12 6E-17 136.0 17.0 44 182-226 25-68 (349)
42 3p32_A Probable GTPase RV1496/ 99.4 1.1E-12 3.6E-17 137.9 15.1 145 182-337 78-232 (355)
43 2xj4_A MIPZ; replication, cell 99.4 2.2E-12 7.6E-17 131.0 15.3 115 183-306 4-136 (286)
44 3pg5_A Uncharacterized protein 99.4 1.6E-12 5.4E-17 136.9 14.4 43 184-226 2-45 (361)
45 2woo_A ATPase GET3; tail-ancho 99.4 1.4E-11 4.9E-16 128.0 19.9 40 183-222 19-58 (329)
46 3zq6_A Putative arsenical pump 99.4 3.7E-12 1.3E-16 132.0 15.2 42 183-225 14-55 (324)
47 3ez2_A Plasmid partition prote 99.4 3.8E-12 1.3E-16 135.3 13.4 164 180-353 105-339 (398)
48 3iqw_A Tail-anchored protein t 99.3 7.6E-12 2.6E-16 130.6 14.1 42 182-223 15-56 (334)
49 2p67_A LAO/AO transport system 99.3 1.1E-11 3.9E-16 129.4 15.4 233 181-428 54-314 (341)
50 2woj_A ATPase GET3; tail-ancho 99.3 6.3E-12 2.2E-16 132.2 13.5 40 183-222 18-59 (354)
51 3ez9_A Para; DNA binding, wing 99.3 4.4E-12 1.5E-16 135.1 10.9 164 180-352 108-341 (403)
52 3fkq_A NTRC-like two-domain pr 99.3 1E-10 3.4E-15 123.5 17.5 146 178-332 138-322 (373)
53 1yrb_A ATP(GTP)binding protein 99.2 7.9E-12 2.7E-16 124.0 7.7 148 182-336 13-185 (262)
54 3io3_A DEHA2D07832P; chaperone 99.2 3E-11 1E-15 126.8 12.2 41 182-222 17-59 (348)
55 1ihu_A Arsenical pump-driving 99.2 3.3E-11 1.1E-15 134.5 13.0 45 181-226 6-50 (589)
56 3fgn_A Dethiobiotin synthetase 99.2 1.5E-10 5E-15 116.3 14.0 169 182-362 25-225 (251)
57 3igf_A ALL4481 protein; two-do 99.1 4.6E-10 1.6E-14 118.9 15.7 37 183-219 2-38 (374)
58 3of5_A Dethiobiotin synthetase 99.1 3.3E-10 1.1E-14 111.9 13.6 167 183-359 4-206 (228)
59 1ihu_A Arsenical pump-driving 99.0 9.2E-10 3.1E-14 122.8 10.3 41 183-223 327-367 (589)
60 3qxc_A Dethiobiotin synthetase 99.0 4.8E-09 1.6E-13 104.7 13.9 148 182-336 20-203 (242)
61 2www_A Methylmalonic aciduria 99.0 3.5E-09 1.2E-13 110.9 13.5 143 182-336 73-226 (349)
62 2wsm_A Hydrogenase expression/ 98.8 1.5E-08 5E-13 97.6 10.6 134 182-335 29-167 (221)
63 2qm8_A GTPase/ATPase; G protei 98.8 6.1E-08 2.1E-12 101.1 14.5 143 181-334 53-205 (337)
64 2rdo_7 EF-G, elongation factor 98.6 7.6E-07 2.6E-11 101.5 18.2 157 264-426 80-259 (704)
65 2r8r_A Sensor protein; KDPD, P 98.6 8.7E-08 3E-12 94.5 8.1 86 183-278 6-97 (228)
66 3vqt_A RF-3, peptide chain rel 98.5 1.4E-07 4.8E-12 104.6 7.5 142 182-353 30-185 (548)
67 2xex_A Elongation factor G; GT 98.5 3.2E-06 1.1E-10 96.2 18.0 219 182-426 9-251 (693)
68 4fn5_A EF-G 1, elongation fact 98.4 3.7E-06 1.3E-10 95.9 18.5 221 183-426 13-262 (709)
69 3izq_1 HBS1P, elongation facto 98.4 5.7E-07 1.9E-11 100.9 11.4 69 83-168 36-104 (611)
70 4a0g_A Adenosylmethionine-8-am 98.4 9.2E-07 3.1E-11 102.6 12.7 94 265-363 201-299 (831)
71 2e87_A Hypothetical protein PH 98.4 5.8E-06 2E-10 86.4 17.7 139 182-356 166-316 (357)
72 1dar_A EF-G, elongation factor 98.4 7.6E-06 2.6E-10 93.1 18.9 217 182-426 11-253 (691)
73 3j25_A Tetracycline resistance 98.4 6.9E-07 2.4E-11 100.8 9.4 142 183-352 2-151 (638)
74 2cvh_A DNA repair and recombin 98.2 1.5E-05 5.1E-10 76.0 14.5 48 164-221 8-55 (220)
75 2hf9_A Probable hydrogenase ni 98.2 2.5E-06 8.6E-11 82.1 8.8 136 182-335 37-177 (226)
76 2dr3_A UPF0273 protein PH0284; 98.2 1E-05 3.5E-10 78.5 12.7 40 183-222 23-62 (247)
77 3iev_A GTP-binding protein ERA 98.2 6.6E-06 2.2E-10 84.3 11.8 117 181-335 8-135 (308)
78 2h5e_A Peptide chain release f 98.2 1.7E-06 5.9E-11 95.4 7.7 151 183-353 13-167 (529)
79 3bgw_A DNAB-like replicative h 98.2 0.00014 4.8E-09 78.4 21.5 116 183-305 197-318 (444)
80 3k53_A Ferrous iron transport 98.2 7.3E-06 2.5E-10 82.0 10.6 136 183-354 3-144 (271)
81 2w0m_A SSO2452; RECA, SSPF, un 98.1 1.9E-05 6.3E-10 75.7 12.8 40 183-222 23-62 (235)
82 2obn_A Hypothetical protein; s 98.1 5.6E-05 1.9E-09 78.9 16.7 157 183-352 152-331 (349)
83 1xp8_A RECA protein, recombina 98.1 1.9E-05 6.5E-10 83.2 13.2 101 163-278 60-165 (366)
84 1u94_A RECA protein, recombina 98.1 1.1E-05 3.9E-10 84.6 11.4 98 163-278 49-154 (356)
85 3iby_A Ferrous iron transport 98.1 1.8E-05 6.2E-10 79.0 12.3 135 185-356 3-147 (256)
86 3hr8_A Protein RECA; alpha and 98.1 5.6E-05 1.9E-09 79.3 16.2 101 163-278 47-152 (356)
87 2dy1_A Elongation factor G; tr 98.1 6.5E-05 2.2E-09 85.1 16.9 209 182-426 8-245 (665)
88 2r6a_A DNAB helicase, replicat 98.0 0.0009 3.1E-08 72.1 25.1 41 183-223 203-244 (454)
89 3lda_A DNA repair protein RAD5 98.0 0.00014 5E-09 77.3 18.5 104 163-277 165-285 (400)
90 2i1q_A DNA repair and recombin 98.0 4.3E-05 1.5E-09 78.3 14.0 138 124-277 42-216 (322)
91 1xjc_A MOBB protein homolog; s 98.0 4.4E-06 1.5E-10 78.8 5.9 40 183-222 4-43 (169)
92 3a4m_A L-seryl-tRNA(SEC) kinas 98.0 1.8E-05 6.1E-10 78.9 10.3 42 182-223 3-44 (260)
93 3bh0_A DNAB-like replicative h 98.0 0.00016 5.3E-09 74.3 17.4 118 183-306 68-190 (315)
94 3tr5_A RF-3, peptide chain rel 98.0 3.8E-06 1.3E-10 92.7 5.4 150 183-353 13-167 (528)
95 2zr9_A Protein RECA, recombina 98.0 2.3E-05 7.7E-10 82.1 10.8 100 163-278 47-152 (349)
96 3i8s_A Ferrous iron transport 98.0 2.7E-05 9.3E-10 78.3 11.0 136 184-356 4-149 (274)
97 3a1s_A Iron(II) transport prot 98.0 1.3E-05 4.6E-10 80.0 8.5 136 184-356 6-147 (258)
98 1jwy_B Dynamin A GTPase domain 98.0 1.6E-05 5.3E-10 80.8 8.9 21 184-204 25-45 (315)
99 2ged_A SR-beta, signal recogni 98.0 3.7E-05 1.2E-09 71.6 10.8 22 183-204 48-69 (193)
100 4a1f_A DNAB helicase, replicat 98.0 0.00012 4E-09 76.4 15.4 156 163-333 34-206 (338)
101 1gvn_B Zeta; postsegregational 98.0 9.9E-05 3.4E-09 74.9 14.6 65 150-223 6-70 (287)
102 2z43_A DNA repair and recombin 98.0 3.2E-05 1.1E-09 79.7 11.2 104 163-277 94-215 (324)
103 1v5w_A DMC1, meiotic recombina 97.9 0.00011 3.8E-09 76.4 14.5 106 163-278 109-232 (343)
104 2q6t_A DNAB replication FORK h 97.9 0.0012 4.1E-08 70.9 23.0 143 183-333 200-363 (444)
105 2c78_A Elongation factor TU-A; 97.9 4.1E-05 1.4E-09 81.3 11.3 127 183-336 11-142 (405)
106 1n0w_A DNA repair protein RAD5 97.9 4.6E-05 1.6E-09 73.7 10.5 103 163-278 11-132 (243)
107 1wf3_A GTP-binding protein; GT 97.9 4.1E-05 1.4E-09 78.3 10.6 119 184-337 8-132 (301)
108 3b1v_A Ferrous iron uptake tra 97.9 4E-05 1.4E-09 77.3 9.9 136 183-356 3-144 (272)
109 3lxx_A GTPase IMAP family memb 97.9 6.9E-05 2.4E-09 73.1 11.2 120 182-335 28-158 (239)
110 3t34_A Dynamin-related protein 97.8 0.00017 5.9E-09 75.1 14.3 74 265-338 135-219 (360)
111 3io5_A Recombination and repai 97.8 6.9E-05 2.4E-09 77.4 10.0 100 163-278 12-124 (333)
112 4dhe_A Probable GTP-binding pr 97.8 7.8E-05 2.7E-09 71.1 9.7 72 264-336 77-158 (223)
113 3ec2_A DNA replication protein 97.8 5.9E-05 2E-09 70.2 8.6 86 183-289 38-124 (180)
114 2i3b_A HCR-ntpase, human cance 97.8 3.4E-06 1.1E-10 80.8 -0.0 27 185-211 3-29 (189)
115 2xtp_A GTPase IMAP family memb 97.8 4.2E-05 1.4E-09 75.6 7.9 23 182-204 21-43 (260)
116 2wji_A Ferrous iron transport 97.8 6.5E-05 2.2E-09 68.6 8.5 89 264-353 48-142 (165)
117 3lxw_A GTPase IMAP family memb 97.8 0.00013 4.6E-09 72.0 11.3 137 182-352 20-179 (247)
118 1ega_A Protein (GTP-binding pr 97.7 0.0001 3.5E-09 75.2 10.4 119 183-336 8-130 (301)
119 2p5t_B PEZT; postsegregational 97.7 0.00027 9.2E-09 69.9 13.1 42 181-225 30-71 (253)
120 2qu8_A Putative nucleolar GTP- 97.7 0.0031 1E-07 60.7 20.4 23 182-204 28-50 (228)
121 2wjg_A FEOB, ferrous iron tran 97.7 0.00022 7.5E-09 65.9 11.7 132 183-354 7-147 (188)
122 2ce2_X GTPase HRAS; signaling 97.7 0.00021 7.1E-09 63.7 10.9 86 264-355 49-144 (166)
123 1cr0_A DNA primase/helicase; R 97.7 0.00047 1.6E-08 69.4 14.7 39 183-221 35-74 (296)
124 1pzn_A RAD51, DNA repair and r 97.7 0.00066 2.3E-08 70.8 16.1 51 163-220 118-174 (349)
125 2zts_A Putative uncharacterize 97.7 0.00053 1.8E-08 66.3 14.4 52 164-222 18-70 (251)
126 4a74_A DNA repair and recombin 97.7 0.0003 1E-08 67.2 12.3 52 163-221 12-69 (231)
127 1d2e_A Elongation factor TU (E 97.7 0.00022 7.7E-09 75.5 12.0 125 184-336 4-133 (397)
128 3clv_A RAB5 protein, putative; 97.7 0.00047 1.6E-08 63.7 12.8 82 266-353 93-181 (208)
129 3gee_A MNME, tRNA modification 97.6 0.00025 8.6E-09 77.1 12.4 71 264-337 279-358 (476)
130 2aka_B Dynamin-1; fusion prote 97.6 0.00021 7.3E-09 71.5 11.0 21 184-204 27-47 (299)
131 4dcu_A GTP-binding protein ENG 97.6 6.2E-05 2.1E-09 81.2 7.1 116 184-335 24-144 (456)
132 2b8t_A Thymidine kinase; deoxy 97.6 0.00015 5.1E-09 71.2 9.0 98 182-292 11-114 (223)
133 1q57_A DNA primase/helicase; d 97.6 0.00097 3.3E-08 72.6 16.3 41 182-222 241-282 (503)
134 3t1o_A Gliding protein MGLA; G 97.6 0.0002 6.9E-09 66.2 9.3 81 264-350 72-165 (198)
135 2dyk_A GTP-binding protein; GT 97.6 0.00036 1.2E-08 62.3 10.6 70 264-336 47-122 (161)
136 1nrj_B SR-beta, signal recogni 97.6 9.8E-05 3.4E-09 70.3 7.2 22 183-204 12-33 (218)
137 2x2e_A Dynamin-1; nitration, h 97.6 9.6E-05 3.3E-09 77.0 7.7 20 185-204 33-52 (353)
138 2hjg_A GTP-binding protein ENG 97.6 0.00019 6.5E-09 76.9 10.3 140 159-336 153-300 (436)
139 3j2k_7 ERF3, eukaryotic polype 97.6 0.00014 4.7E-09 78.3 9.1 65 264-335 93-168 (439)
140 2hxs_A RAB-26, RAS-related pro 97.6 0.00052 1.8E-08 62.5 11.8 133 183-354 6-151 (178)
141 1svi_A GTP-binding protein YSX 97.6 0.00067 2.3E-08 62.9 12.7 23 182-204 22-44 (195)
142 1z0f_A RAB14, member RAS oncog 97.6 0.00057 2E-08 62.0 11.7 82 265-352 63-154 (179)
143 1h65_A Chloroplast outer envel 97.5 0.00041 1.4E-08 69.1 11.3 22 183-204 39-60 (270)
144 3geh_A MNME, tRNA modification 97.5 0.00014 4.6E-09 79.0 8.3 70 264-336 270-344 (462)
145 1fnn_A CDC6P, cell division co 97.5 0.0074 2.5E-07 62.1 21.2 102 185-291 46-149 (389)
146 1g16_A RAS-related protein SEC 97.5 0.00023 7.9E-09 64.1 8.5 84 265-354 51-143 (170)
147 1z2a_A RAS-related protein RAB 97.5 0.00014 4.8E-09 65.4 7.0 82 265-353 53-144 (168)
148 3bos_A Putative DNA replicatio 97.5 0.00032 1.1E-08 67.1 9.9 40 183-222 52-91 (242)
149 3tkl_A RAS-related protein RAB 97.5 0.00034 1.2E-08 64.9 9.6 85 265-355 64-158 (196)
150 1nlf_A Regulatory protein REPA 97.5 0.00086 2.9E-08 67.0 13.2 40 182-221 29-78 (279)
151 2efe_B Small GTP-binding prote 97.5 0.00046 1.6E-08 63.0 10.2 82 265-352 60-151 (181)
152 1f60_A Elongation factor EEF1A 97.5 0.00062 2.1E-08 73.5 12.8 65 264-335 83-158 (458)
153 3con_A GTPase NRAS; structural 97.5 0.00016 5.4E-09 67.1 7.1 83 265-353 68-160 (190)
154 3p26_A Elongation factor 1 alp 97.5 0.00026 8.8E-09 77.0 9.7 66 264-336 109-185 (483)
155 3pqc_A Probable GTP-binding pr 97.5 0.00064 2.2E-08 62.7 11.1 21 184-204 24-44 (195)
156 4dcu_A GTP-binding protein ENG 97.5 0.00096 3.3E-08 71.8 13.9 118 182-335 194-319 (456)
157 2hjg_A GTP-binding protein ENG 97.5 0.00019 6.5E-09 76.9 8.3 115 185-335 5-124 (436)
158 2axn_A 6-phosphofructo-2-kinas 97.5 0.00095 3.2E-08 73.4 13.8 45 181-225 33-77 (520)
159 2yvu_A Probable adenylyl-sulfa 97.4 0.0001 3.5E-09 69.0 5.1 42 182-223 12-53 (186)
160 3tqc_A Pantothenate kinase; bi 97.4 0.00065 2.2E-08 70.2 11.6 43 181-223 90-134 (321)
161 2erx_A GTP-binding protein DI- 97.4 0.00038 1.3E-08 62.6 8.6 81 265-352 50-143 (172)
162 2ehv_A Hypothetical protein PH 97.4 0.00046 1.6E-08 66.8 9.8 41 182-222 29-70 (251)
163 1u8z_A RAS-related protein RAL 97.4 0.00093 3.2E-08 59.6 11.1 81 265-352 51-143 (168)
164 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00055 1.9E-08 70.9 10.6 73 183-278 123-195 (331)
165 1kao_A RAP2A; GTP-binding prot 97.4 0.0019 6.4E-08 57.6 13.0 85 265-355 50-145 (167)
166 2p5s_A RAS and EF-hand domain 97.4 0.00073 2.5E-08 63.4 10.7 23 182-204 27-49 (199)
167 3cph_A RAS-related protein SEC 97.4 0.00058 2E-08 64.3 10.0 84 265-354 68-160 (213)
168 2a9k_A RAS-related protein RAL 97.4 0.00093 3.2E-08 61.0 11.2 82 265-352 65-157 (187)
169 3bc1_A RAS-related protein RAB 97.4 0.00059 2E-08 62.7 9.7 83 265-353 69-162 (195)
170 1zun_B Sulfate adenylate trans 97.4 0.0012 4.1E-08 70.7 13.4 66 264-336 102-171 (434)
171 2nzj_A GTP-binding protein REM 97.4 0.0012 4.2E-08 59.6 11.6 21 184-204 5-25 (175)
172 2g0t_A Conserved hypothetical 97.4 0.0013 4.3E-08 68.8 13.1 139 183-331 169-323 (350)
173 2bov_A RAla, RAS-related prote 97.4 0.0017 5.9E-08 60.5 12.9 84 265-354 61-155 (206)
174 2ywe_A GTP-binding protein LEP 97.4 0.0006 2.1E-08 76.2 11.3 64 265-335 72-138 (600)
175 3def_A T7I23.11 protein; chlor 97.4 0.00088 3E-08 66.5 11.4 22 183-204 36-57 (262)
176 1z0j_A RAB-22, RAS-related pro 97.4 0.00036 1.2E-08 62.8 7.8 82 265-352 54-145 (170)
177 2g6b_A RAS-related protein RAB 97.4 0.001 3.4E-08 60.7 10.9 83 265-353 59-151 (180)
178 1jny_A EF-1-alpha, elongation 97.4 0.00068 2.3E-08 72.7 11.1 67 263-336 81-158 (435)
179 3tw8_B RAS-related protein RAB 97.4 0.00016 5.5E-09 65.8 5.4 84 265-354 57-149 (181)
180 1tf7_A KAIC; homohexamer, hexa 97.4 0.00099 3.4E-08 73.1 12.6 87 182-272 280-378 (525)
181 2fg5_A RAB-22B, RAS-related pr 97.4 0.00048 1.6E-08 64.3 8.7 83 264-352 70-162 (192)
182 2gf0_A GTP-binding protein DI- 97.3 0.001 3.4E-08 61.8 10.6 82 264-352 54-147 (199)
183 1g5t_A COB(I)alamin adenosyltr 97.3 0.0027 9.4E-08 61.0 13.7 89 182-275 28-130 (196)
184 3kkq_A RAS-related protein M-R 97.3 0.0017 5.8E-08 59.5 11.9 86 265-356 65-161 (183)
185 1r2q_A RAS-related protein RAB 97.3 0.00077 2.6E-08 60.5 9.3 82 265-352 54-145 (170)
186 1xx6_A Thymidine kinase; NESG, 97.3 0.00031 1.1E-08 67.2 7.0 95 182-291 7-105 (191)
187 2y8e_A RAB-protein 6, GH09086P 97.3 0.00056 1.9E-08 62.1 8.5 83 265-353 62-154 (179)
188 1mky_A Probable GTP-binding pr 97.3 0.0012 4E-08 70.8 12.3 114 185-335 3-123 (439)
189 3sjy_A Translation initiation 97.3 0.00061 2.1E-08 72.2 10.0 65 266-336 75-143 (403)
190 2lkc_A Translation initiation 97.3 0.00021 7.2E-09 65.1 5.5 67 264-336 53-121 (178)
191 1r8s_A ADP-ribosylation factor 97.3 0.00047 1.6E-08 61.9 7.7 67 264-336 42-115 (164)
192 3cb4_D GTP-binding protein LEP 97.3 0.00054 1.8E-08 76.6 9.6 80 265-351 70-154 (599)
193 2il1_A RAB12; G-protein, GDP, 97.3 0.00033 1.1E-08 65.5 6.6 65 265-335 74-144 (192)
194 2fh5_B SR-beta, signal recogni 97.3 0.00036 1.2E-08 66.1 6.8 22 183-204 7-28 (214)
195 1z08_A RAS-related protein RAB 97.3 0.00044 1.5E-08 62.3 7.2 83 264-352 53-145 (170)
196 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00065 2.2E-08 62.3 8.4 84 265-354 51-144 (189)
197 2kjq_A DNAA-related protein; s 97.3 0.00035 1.2E-08 63.9 6.4 39 183-221 36-74 (149)
198 2bcg_Y Protein YP2, GTP-bindin 97.3 0.00025 8.5E-09 66.8 5.6 83 265-353 56-148 (206)
199 2hup_A RAS-related protein RAB 97.3 0.0015 5E-08 61.6 11.0 82 265-352 77-169 (201)
200 4bas_A ADP-ribosylation factor 97.3 0.00033 1.1E-08 65.2 6.3 23 182-204 16-38 (199)
201 3avx_A Elongation factor TS, e 97.3 0.014 4.7E-07 69.6 21.2 126 183-336 296-426 (1289)
202 1x3s_A RAS-related protein RAB 97.3 0.0005 1.7E-08 63.6 7.4 83 264-352 62-154 (195)
203 3t61_A Gluconokinase; PSI-biol 97.3 0.0021 7.2E-08 60.7 11.9 37 183-224 18-54 (202)
204 2ew1_A RAS-related protein RAB 97.2 0.0012 4.2E-08 62.6 10.1 82 265-352 74-165 (201)
205 3cmw_A Protein RECA, recombina 97.2 0.0016 5.6E-08 80.1 13.7 101 163-278 718-823 (1706)
206 2gf9_A RAS-related protein RAB 97.2 0.00046 1.6E-08 64.1 6.9 84 264-353 69-162 (189)
207 2yc2_C IFT27, small RAB-relate 97.2 0.0006 2E-08 63.7 7.8 82 265-353 72-168 (208)
208 1zbd_A Rabphilin-3A; G protein 97.2 0.00054 1.8E-08 64.2 7.4 83 265-353 56-148 (203)
209 3umf_A Adenylate kinase; rossm 97.2 0.0015 5.3E-08 63.6 10.8 40 181-224 27-66 (217)
210 1ky3_A GTP-binding protein YPT 97.2 0.0005 1.7E-08 62.6 6.9 22 183-204 8-29 (182)
211 3cmu_A Protein RECA, recombina 97.2 0.0011 3.8E-08 82.6 12.0 87 182-275 1426-1515(2050)
212 2elf_A Protein translation elo 97.2 0.00053 1.8E-08 72.2 8.0 99 185-334 23-125 (370)
213 1z06_A RAS-related protein RAB 97.2 0.0013 4.5E-08 60.9 9.7 84 265-353 68-162 (189)
214 3q85_A GTP-binding protein REM 97.2 0.0023 7.8E-08 57.6 11.1 83 265-352 50-143 (169)
215 3dpu_A RAB family protein; roc 97.2 0.0043 1.5E-07 68.1 15.2 93 264-363 96-197 (535)
216 3dz8_A RAS-related protein RAB 97.2 0.00037 1.3E-08 64.9 5.6 83 264-352 70-162 (191)
217 2cxx_A Probable GTP-binding pr 97.2 0.0036 1.2E-07 57.4 12.3 20 185-204 3-22 (190)
218 3zvr_A Dynamin-1; hydrolase, D 97.2 0.0056 1.9E-07 70.1 16.2 74 265-339 149-234 (772)
219 2fn4_A P23, RAS-related protei 97.2 0.0016 5.6E-08 59.0 9.7 22 183-204 9-30 (181)
220 1ek0_A Protein (GTP-binding pr 97.2 0.0023 7.9E-08 57.2 10.6 82 265-352 51-145 (170)
221 2oil_A CATX-8, RAS-related pro 97.2 0.00053 1.8E-08 63.8 6.4 83 264-352 72-164 (193)
222 1fzq_A ADP-ribosylation factor 97.2 0.0011 3.7E-08 61.5 8.5 110 182-336 15-131 (181)
223 2a5j_A RAS-related protein RAB 97.2 0.0013 4.3E-08 61.2 9.0 83 265-353 69-161 (191)
224 1zj6_A ADP-ribosylation factor 97.2 0.0014 4.6E-08 60.7 9.2 109 183-336 16-131 (187)
225 2fu5_C RAS-related protein RAB 97.1 0.0013 4.6E-08 60.2 9.0 82 265-352 56-147 (183)
226 1c1y_A RAS-related protein RAP 97.1 0.0022 7.7E-08 57.3 10.4 21 184-204 4-24 (167)
227 4b3f_X DNA-binding protein smu 97.1 0.00075 2.6E-08 75.9 8.7 44 185-231 207-250 (646)
228 3q72_A GTP-binding protein RAD 97.1 0.0011 3.8E-08 59.5 8.3 83 264-352 47-140 (166)
229 2gj8_A MNME, tRNA modification 97.1 0.001 3.4E-08 61.3 8.1 22 183-204 4-25 (172)
230 1upt_A ARL1, ADP-ribosylation 97.1 0.00021 7.2E-09 64.5 3.4 109 183-336 7-122 (171)
231 2qpt_A EH domain-containing pr 97.1 0.00048 1.6E-08 76.2 6.9 22 183-204 65-86 (550)
232 1rz3_A Hypothetical protein rb 97.1 0.00056 1.9E-08 65.1 6.3 42 182-223 21-62 (201)
233 2o52_A RAS-related protein RAB 97.1 0.00082 2.8E-08 63.3 7.3 22 183-204 25-46 (200)
234 1nks_A Adenylate kinase; therm 97.1 0.00043 1.5E-08 64.2 5.3 37 184-220 2-38 (194)
235 1zd9_A ADP-ribosylation factor 97.1 0.00069 2.4E-08 63.0 6.6 110 183-336 22-138 (188)
236 2h17_A ADP-ribosylation factor 97.1 0.00044 1.5E-08 63.8 5.2 110 182-336 20-136 (181)
237 3uie_A Adenylyl-sulfate kinase 97.1 0.00043 1.5E-08 65.7 5.2 43 182-224 24-66 (200)
238 3cmu_A Protein RECA, recombina 97.1 0.0018 6.1E-08 80.8 11.8 89 182-278 382-474 (2050)
239 1knq_A Gluconate kinase; ALFA/ 97.1 0.0033 1.1E-07 57.8 11.0 38 182-224 7-44 (175)
240 2bme_A RAB4A, RAS-related prot 97.1 0.0019 6.5E-08 59.2 9.3 82 265-352 58-149 (186)
241 1qf9_A UMP/CMP kinase, protein 97.1 0.0054 1.8E-07 56.6 12.3 34 182-220 5-38 (194)
242 3mca_A HBS1, elongation factor 97.1 0.00016 5.4E-09 80.8 2.1 25 183-207 177-201 (592)
243 3c8u_A Fructokinase; YP_612366 97.1 0.0013 4.3E-08 62.9 8.2 43 181-223 20-62 (208)
244 1r5b_A Eukaryotic peptide chai 97.0 0.00022 7.5E-09 77.3 2.9 65 264-335 119-194 (467)
245 2j69_A Bacterial dynamin-like 97.0 0.001 3.5E-08 75.6 8.5 22 183-204 69-90 (695)
246 2f7s_A C25KG, RAS-related prot 97.0 0.002 6.9E-08 61.0 9.3 85 265-355 83-178 (217)
247 1kht_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 63.9 4.7 38 183-220 3-40 (192)
248 1nij_A Hypothetical protein YJ 97.0 0.014 4.7E-07 59.8 16.1 171 183-359 4-189 (318)
249 2b6h_A ADP-ribosylation factor 97.0 0.0014 4.9E-08 61.3 8.1 110 182-336 28-144 (192)
250 1l8q_A Chromosomal replication 97.0 0.0015 5.1E-08 66.5 8.7 40 183-222 37-76 (324)
251 1ukz_A Uridylate kinase; trans 97.0 0.01 3.5E-07 55.8 13.9 36 180-220 12-47 (203)
252 2qby_B CDC6 homolog 3, cell di 97.0 0.0038 1.3E-07 64.4 11.8 40 182-221 44-91 (384)
253 3lw7_A Adenylate kinase relate 97.0 0.003 1E-07 57.0 9.8 28 184-215 2-29 (179)
254 1a7j_A Phosphoribulokinase; tr 97.0 0.00032 1.1E-08 71.3 3.4 42 182-223 4-45 (290)
255 2qtf_A Protein HFLX, GTP-bindi 97.0 0.0044 1.5E-07 65.0 12.3 22 183-204 179-200 (364)
256 1ksh_A ARF-like protein 2; sma 97.0 0.0016 5.5E-08 59.9 8.0 110 182-336 17-133 (186)
257 1moz_A ARL1, ADP-ribosylation 97.0 0.00045 1.5E-08 63.3 4.1 110 182-336 17-133 (183)
258 1f6b_A SAR1; gtpases, N-termin 97.0 0.00044 1.5E-08 65.3 4.1 22 183-204 25-46 (198)
259 2pez_A Bifunctional 3'-phospho 97.0 0.00065 2.2E-08 63.0 5.2 42 182-223 4-45 (179)
260 2h57_A ADP-ribosylation factor 97.0 0.0007 2.4E-08 62.8 5.3 67 264-336 65-140 (190)
261 2qby_A CDC6 homolog 1, cell di 97.0 0.0028 9.7E-08 64.9 10.3 93 182-277 44-140 (386)
262 1n0u_A EF-2, elongation factor 97.0 0.0011 3.8E-08 76.9 8.0 63 265-335 97-163 (842)
263 1m7g_A Adenylylsulfate kinase; 97.0 0.00056 1.9E-08 65.5 4.7 42 182-223 24-66 (211)
264 3oes_A GTPase rhebl1; small GT 96.9 0.00061 2.1E-08 64.1 4.7 83 264-352 70-163 (201)
265 1np6_A Molybdopterin-guanine d 96.9 0.00093 3.2E-08 62.9 5.8 39 183-221 6-44 (174)
266 3e1s_A Exodeoxyribonuclease V, 96.9 0.0035 1.2E-07 69.7 11.3 109 183-305 204-315 (574)
267 3lv8_A DTMP kinase, thymidylat 96.9 0.0029 1E-07 62.4 9.6 40 182-221 26-65 (236)
268 1uj2_A Uridine-cytidine kinase 96.9 0.00066 2.3E-08 66.9 4.9 42 181-222 20-66 (252)
269 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.02 6.7E-07 55.7 15.4 73 182-277 38-110 (262)
270 2atv_A RERG, RAS-like estrogen 96.9 0.0085 2.9E-07 55.8 12.2 81 265-352 75-166 (196)
271 2bwj_A Adenylate kinase 5; pho 96.9 0.0066 2.3E-07 56.6 11.4 34 183-221 12-45 (199)
272 2c95_A Adenylate kinase 1; tra 96.9 0.0094 3.2E-07 55.3 12.4 34 182-220 8-41 (196)
273 3cmw_A Protein RECA, recombina 96.9 0.0022 7.5E-08 79.0 10.1 149 182-346 1430-1591(1706)
274 3t5g_A GTP-binding protein RHE 96.9 0.0012 4.3E-08 60.3 6.2 82 265-352 53-145 (181)
275 3reg_A RHO-like small GTPase; 96.9 0.0016 5.3E-08 60.7 7.0 82 264-351 69-162 (194)
276 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.0028 9.5E-08 57.5 8.5 21 184-204 8-28 (177)
277 1zo1_I IF2, translation initia 96.9 0.0013 4.6E-08 71.9 7.4 110 182-335 3-116 (501)
278 4eaq_A DTMP kinase, thymidylat 96.9 0.025 8.4E-07 55.1 15.8 35 182-217 25-59 (229)
279 1wb1_A Translation elongation 96.9 0.00099 3.4E-08 72.5 6.3 65 264-336 71-139 (482)
280 3zvl_A Bifunctional polynucleo 96.9 0.0053 1.8E-07 65.4 11.7 38 181-223 256-293 (416)
281 4fcw_A Chaperone protein CLPB; 96.8 0.0033 1.1E-07 63.1 9.5 43 182-224 46-88 (311)
282 4a9a_A Ribosome-interacting GT 96.8 0.0014 4.8E-08 69.2 6.8 123 176-334 65-194 (376)
283 1m2o_B GTP-binding protein SAR 96.8 0.0009 3.1E-08 62.6 4.8 67 264-336 65-138 (190)
284 2j1l_A RHO-related GTP-binding 96.8 0.0023 7.7E-08 61.0 7.6 22 183-204 34-55 (214)
285 4eun_A Thermoresistant glucoki 96.8 0.014 4.8E-07 55.1 13.1 38 182-224 28-65 (200)
286 2fv8_A H6, RHO-related GTP-bin 96.8 0.00073 2.5E-08 63.9 4.1 22 183-204 25-46 (207)
287 3qq5_A Small GTP-binding prote 96.8 0.00023 8E-09 76.3 0.6 67 267-336 84-154 (423)
288 3llu_A RAS-related GTP-binding 96.8 0.005 1.7E-07 57.5 9.8 69 264-335 67-142 (196)
289 3gj0_A GTP-binding nuclear pro 96.8 0.00077 2.6E-08 64.3 4.2 82 264-352 62-151 (221)
290 1vg8_A RAS-related protein RAB 96.8 0.0007 2.4E-08 63.4 3.8 22 183-204 8-29 (207)
291 3t5d_A Septin-7; GTP-binding p 96.8 0.0039 1.3E-07 62.2 9.5 21 184-204 9-29 (274)
292 1mky_A Probable GTP-binding pr 96.8 0.0045 1.5E-07 66.2 10.5 23 182-204 179-201 (439)
293 2v1u_A Cell division control p 96.8 0.0061 2.1E-07 62.5 11.1 94 182-278 43-143 (387)
294 1odf_A YGR205W, hypothetical 3 96.7 0.00099 3.4E-08 67.7 4.8 42 181-222 29-73 (290)
295 1ly1_A Polynucleotide kinase; 96.7 0.00083 2.8E-08 61.6 3.7 38 183-224 2-39 (181)
296 2w58_A DNAI, primosome compone 96.7 0.0013 4.4E-08 62.0 5.1 38 183-220 54-91 (202)
297 3cbq_A GTP-binding protein REM 96.7 0.0098 3.4E-07 55.8 11.2 83 265-352 71-164 (195)
298 3cpj_B GTP-binding protein YPT 96.7 0.0018 6.3E-08 61.9 6.1 82 265-352 61-152 (223)
299 1g7s_A Translation initiation 96.7 0.0023 7.8E-08 71.5 7.6 63 265-335 69-135 (594)
300 2iwr_A Centaurin gamma 1; ANK 96.7 0.0093 3.2E-07 54.2 10.2 22 183-204 7-28 (178)
301 1nn5_A Similar to deoxythymidy 96.6 0.002 6.7E-08 61.0 5.7 36 182-217 8-43 (215)
302 1jr3_A DNA polymerase III subu 96.6 0.061 2.1E-06 54.9 17.4 27 183-209 38-64 (373)
303 1lnz_A SPO0B-associated GTP-bi 96.6 0.0016 5.4E-08 67.8 5.4 20 185-204 160-179 (342)
304 2x77_A ADP-ribosylation factor 96.6 0.00093 3.2E-08 61.8 3.2 110 182-336 21-137 (189)
305 2j9r_A Thymidine kinase; TK1, 96.6 0.0024 8.2E-08 62.2 6.2 38 181-218 26-63 (214)
306 3asz_A Uridine kinase; cytidin 96.6 0.0019 6.6E-08 61.2 5.4 38 182-222 5-42 (211)
307 3llm_A ATP-dependent RNA helic 96.6 0.02 6.8E-07 55.5 12.8 124 184-310 77-221 (235)
308 2atx_A Small GTP binding prote 96.6 0.0066 2.3E-07 56.2 8.9 65 265-336 65-136 (194)
309 3bwd_D RAC-like GTP-binding pr 96.6 0.0012 4.1E-08 60.2 3.8 22 183-204 8-29 (182)
310 2z4s_A Chromosomal replication 96.6 0.0054 1.8E-07 65.8 9.4 40 183-222 130-171 (440)
311 1kk1_A EIF2gamma; initiation o 96.6 0.002 6.7E-08 68.4 5.8 64 266-336 83-151 (410)
312 3h4m_A Proteasome-activating n 96.5 0.02 6.7E-07 56.7 12.6 72 182-276 50-121 (285)
313 2z0h_A DTMP kinase, thymidylat 96.5 0.0025 8.6E-08 59.4 5.7 34 185-218 2-35 (197)
314 1zd8_A GTP:AMP phosphotransfer 96.5 0.018 6.2E-07 55.4 12.0 34 182-220 6-39 (227)
315 1qhx_A CPT, protein (chloramph 96.5 0.0011 3.6E-08 61.1 3.1 37 183-222 3-39 (178)
316 3te6_A Regulatory protein SIR3 96.5 0.05 1.7E-06 55.9 15.9 102 182-290 44-156 (318)
317 2q3h_A RAS homolog gene family 96.5 0.0033 1.1E-07 58.6 6.5 22 183-204 20-41 (201)
318 3syl_A Protein CBBX; photosynt 96.5 0.12 4.1E-06 51.5 18.4 38 182-219 66-107 (309)
319 2orw_A Thymidine kinase; TMTK, 96.5 0.0028 9.6E-08 59.8 5.7 37 183-219 3-39 (184)
320 3c5c_A RAS-like protein 12; GD 96.5 0.0055 1.9E-07 56.9 7.6 82 264-352 67-161 (187)
321 3o47_A ADP-ribosylation factor 96.5 0.0017 5.7E-08 67.0 4.4 22 183-204 165-186 (329)
322 3t15_A Ribulose bisphosphate c 96.5 0.003 1E-07 63.9 6.2 36 181-219 34-69 (293)
323 2eyu_A Twitching motility prot 96.5 0.017 5.7E-07 57.7 11.6 39 182-220 24-63 (261)
324 3sr0_A Adenylate kinase; phosp 96.5 0.016 5.6E-07 55.7 11.1 86 185-278 2-87 (206)
325 1s1m_A CTP synthase; CTP synth 96.5 0.0094 3.2E-07 65.7 10.4 116 184-301 4-171 (545)
326 2plr_A DTMP kinase, probable t 96.5 0.0028 9.5E-08 59.6 5.4 33 183-216 4-36 (213)
327 2pbr_A DTMP kinase, thymidylat 96.4 0.0031 1.1E-07 58.4 5.7 33 185-217 2-34 (195)
328 2gco_A H9, RHO-related GTP-bin 96.4 0.0041 1.4E-07 58.4 6.5 21 184-204 26-46 (201)
329 2j0v_A RAC-like GTP-binding pr 96.4 0.0036 1.2E-07 59.0 6.1 65 264-335 55-126 (212)
330 3izy_P Translation initiation 96.4 0.00075 2.6E-08 74.5 1.5 23 183-205 4-26 (537)
331 3th5_A RAS-related C3 botulinu 95.4 0.00049 1.7E-08 64.8 0.0 22 183-204 30-51 (204)
332 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0017 5.7E-08 59.4 3.6 21 184-204 6-26 (186)
333 2zej_A Dardarin, leucine-rich 96.4 0.0036 1.2E-07 57.9 6.0 20 185-204 4-23 (184)
334 1vco_A CTP synthetase; tetrame 96.4 0.01 3.5E-07 65.4 10.5 40 183-222 12-53 (550)
335 1m7b_A RND3/RHOE small GTP-bin 96.4 0.003 1E-07 58.2 5.4 22 183-204 7-28 (184)
336 1s0u_A EIF-2-gamma, translatio 96.4 0.023 7.9E-07 60.1 12.9 62 266-335 81-148 (408)
337 3jvv_A Twitching mobility prot 96.4 0.02 7E-07 59.7 12.2 108 183-308 123-233 (356)
338 3ihw_A Centg3; RAS, centaurin, 96.4 0.023 8E-07 52.6 11.4 22 183-204 20-41 (184)
339 2f6r_A COA synthase, bifunctio 96.4 0.0055 1.9E-07 61.7 7.5 36 181-222 73-108 (281)
340 2wwf_A Thymidilate kinase, put 96.4 0.0033 1.1E-07 59.4 5.5 37 182-218 9-45 (212)
341 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.021 7.1E-07 58.5 11.9 74 182-277 44-117 (322)
342 1c9k_A COBU, adenosylcobinamid 96.4 0.002 6.8E-08 61.1 3.8 32 185-220 1-32 (180)
343 3q3j_B RHO-related GTP-binding 96.4 0.0038 1.3E-07 59.6 5.9 22 183-204 27-48 (214)
344 4djt_A GTP-binding nuclear pro 96.4 0.0015 5.2E-08 61.9 3.0 65 266-336 61-131 (218)
345 3d8b_A Fidgetin-like protein 1 96.4 0.018 6.3E-07 59.7 11.5 70 182-274 116-185 (357)
346 4gzl_A RAS-related C3 botulinu 96.3 0.0011 3.8E-08 62.6 1.9 23 182-204 29-51 (204)
347 1sq5_A Pantothenate kinase; P- 96.3 0.0035 1.2E-07 63.9 5.8 43 181-223 78-122 (308)
348 2ewv_A Twitching motility prot 96.3 0.016 5.4E-07 60.9 10.9 38 182-219 135-173 (372)
349 2grj_A Dephospho-COA kinase; T 96.3 0.013 4.3E-07 55.9 9.2 36 182-222 11-46 (192)
350 1gtv_A TMK, thymidylate kinase 96.3 0.0012 4.1E-08 62.5 2.0 36 185-220 2-37 (214)
351 1tq4_A IIGP1, interferon-induc 96.3 0.12 4E-06 55.1 17.5 58 431-502 291-348 (413)
352 1x6v_B Bifunctional 3'-phospho 96.3 0.003 1E-07 70.9 5.2 43 182-224 51-93 (630)
353 1y63_A LMAJ004144AAA protein; 96.3 0.0028 9.5E-08 59.2 4.3 36 181-220 8-43 (184)
354 3vaa_A Shikimate kinase, SK; s 96.3 0.0023 7.9E-08 60.5 3.7 36 181-221 23-58 (199)
355 1pui_A ENGB, probable GTP-bind 96.3 0.016 5.5E-07 54.3 9.5 24 181-204 24-47 (210)
356 2f1r_A Molybdopterin-guanine d 96.3 0.0024 8.4E-08 59.8 3.7 39 184-222 3-41 (171)
357 2v54_A DTMP kinase, thymidylat 96.2 0.0042 1.4E-07 58.3 5.4 35 183-219 4-38 (204)
358 2jeo_A Uridine-cytidine kinase 96.2 0.0041 1.4E-07 60.9 5.5 45 178-222 20-69 (245)
359 2chg_A Replication factor C sm 96.2 0.022 7.7E-07 52.8 10.2 28 186-213 41-68 (226)
360 1w5s_A Origin recognition comp 96.2 0.062 2.1E-06 55.6 14.6 40 182-221 49-96 (412)
361 4dkx_A RAS-related protein RAB 96.2 0.031 1.1E-06 53.9 11.4 83 264-352 60-152 (216)
362 3lvq_E ARF-GAP with SH3 domain 96.2 0.0087 3E-07 64.7 8.2 81 264-351 364-451 (497)
363 2qt1_A Nicotinamide riboside k 96.2 0.0049 1.7E-07 58.3 5.6 38 181-222 19-56 (207)
364 1xzp_A Probable tRNA modificat 96.2 0.0046 1.6E-07 67.3 5.9 22 184-205 244-265 (482)
365 2orv_A Thymidine kinase; TP4A 96.2 0.011 3.7E-07 58.3 7.9 84 182-278 18-103 (234)
366 2rhm_A Putative kinase; P-loop 96.1 0.0036 1.2E-07 58.0 4.3 37 182-223 4-40 (193)
367 2gks_A Bifunctional SAT/APS ki 96.1 0.0051 1.7E-07 68.0 6.1 42 182-223 371-412 (546)
368 1jbk_A CLPB protein; beta barr 96.1 0.0058 2E-07 55.5 5.6 37 183-219 43-86 (195)
369 4tmk_A Protein (thymidylate ki 96.1 0.033 1.1E-06 53.9 11.2 38 183-221 3-41 (213)
370 3trf_A Shikimate kinase, SK; a 96.1 0.003 1E-07 58.5 3.6 35 183-222 5-39 (185)
371 1m8p_A Sulfate adenylyltransfe 96.1 0.0035 1.2E-07 69.7 4.8 44 181-224 394-438 (573)
372 3aez_A Pantothenate kinase; tr 96.1 0.0069 2.4E-07 62.1 6.6 42 181-222 88-131 (312)
373 3b9p_A CG5977-PA, isoform A; A 96.1 0.018 6.2E-07 57.4 9.4 73 182-277 53-125 (297)
374 3l0i_B RAS-related protein RAB 96.1 0.0004 1.4E-08 65.2 -2.7 21 183-203 33-53 (199)
375 3exa_A TRNA delta(2)-isopenten 96.1 0.019 6.4E-07 59.2 9.6 35 183-222 3-37 (322)
376 4edh_A DTMP kinase, thymidylat 96.0 0.0069 2.4E-07 58.6 5.9 36 182-217 5-40 (213)
377 1tev_A UMP-CMP kinase; ploop, 96.0 0.0045 1.5E-07 57.3 4.3 33 183-220 3-35 (196)
378 3szr_A Interferon-induced GTP- 96.0 0.014 4.7E-07 65.3 9.0 72 265-336 146-228 (608)
379 2qgz_A Helicase loader, putati 96.0 0.0057 1.9E-07 62.5 5.4 38 183-220 152-190 (308)
380 3eie_A Vacuolar protein sortin 96.0 0.026 8.8E-07 57.5 10.3 73 182-277 50-122 (322)
381 1gwn_A RHO-related GTP-binding 96.0 0.0017 5.8E-08 61.8 1.2 22 183-204 28-49 (205)
382 1zp6_A Hypothetical protein AT 96.0 0.0049 1.7E-07 57.2 4.3 37 182-221 8-44 (191)
383 3d3q_A TRNA delta(2)-isopenten 96.0 0.0054 1.9E-07 63.8 4.9 34 184-222 8-41 (340)
384 4gp7_A Metallophosphoesterase; 95.9 0.0054 1.8E-07 56.8 4.3 22 182-203 8-29 (171)
385 1wxq_A GTP-binding protein; st 95.9 0.019 6.5E-07 60.9 8.9 20 185-204 2-21 (397)
386 3ld9_A DTMP kinase, thymidylat 95.9 0.012 4.1E-07 57.6 6.7 42 181-222 19-61 (223)
387 1uf9_A TT1252 protein; P-loop, 95.8 0.0043 1.5E-07 58.0 3.4 36 181-222 6-41 (203)
388 3kb2_A SPBC2 prophage-derived 95.8 0.005 1.7E-07 55.8 3.6 36 184-224 2-37 (173)
389 3hjn_A DTMP kinase, thymidylat 95.8 0.018 6.2E-07 54.9 7.7 34 185-218 2-35 (197)
390 2p65_A Hypothetical protein PF 95.8 0.0069 2.4E-07 55.1 4.5 37 183-219 43-86 (187)
391 3pzx_A Formate--tetrahydrofola 95.8 0.011 3.6E-07 64.0 6.5 43 182-227 56-102 (557)
392 2iyv_A Shikimate kinase, SK; t 95.8 0.0037 1.3E-07 57.9 2.4 33 185-222 4-36 (184)
393 4b4t_K 26S protease regulatory 95.7 0.034 1.2E-06 59.5 10.1 70 181-273 204-273 (428)
394 4i1u_A Dephospho-COA kinase; s 95.7 0.051 1.8E-06 52.6 10.4 33 183-221 9-41 (210)
395 2cdn_A Adenylate kinase; phosp 95.7 0.0075 2.6E-07 56.8 4.3 35 181-220 18-52 (201)
396 3iij_A Coilin-interacting nucl 95.7 0.0066 2.2E-07 56.1 3.7 34 182-220 10-43 (180)
397 2qp9_X Vacuolar protein sortin 95.7 0.041 1.4E-06 57.1 10.1 73 182-277 83-155 (355)
398 3cm0_A Adenylate kinase; ATP-b 95.6 0.0071 2.4E-07 55.9 4.0 33 183-220 4-36 (186)
399 3r7w_A Gtpase1, GTP-binding pr 95.6 0.014 4.9E-07 59.2 6.5 21 184-204 4-24 (307)
400 1g8f_A Sulfate adenylyltransfe 95.6 0.0092 3.1E-07 65.4 5.2 40 182-221 394-435 (511)
401 4b4t_L 26S protease subunit RP 95.6 0.039 1.3E-06 59.3 10.0 71 181-274 213-283 (437)
402 1lv7_A FTSH; alpha/beta domain 95.6 0.033 1.1E-06 54.4 8.8 34 183-219 45-78 (257)
403 2ze6_A Isopentenyl transferase 95.6 0.0087 3E-07 59.2 4.4 34 184-222 2-35 (253)
404 3a00_A Guanylate kinase, GMP k 95.5 0.0047 1.6E-07 57.8 2.3 26 183-208 1-26 (186)
405 1sxj_E Activator 1 40 kDa subu 95.5 0.031 1.1E-06 57.0 8.6 25 183-208 37-61 (354)
406 1d2n_A N-ethylmaleimide-sensit 95.5 0.021 7.1E-07 56.5 7.1 34 182-218 63-96 (272)
407 1tf7_A KAIC; homohexamer, hexa 95.5 0.034 1.2E-06 60.8 9.5 40 182-221 38-78 (525)
408 3tau_A Guanylate kinase, GMP k 95.5 0.0059 2E-07 58.3 3.0 26 182-207 7-32 (208)
409 1ltq_A Polynucleotide kinase; 95.5 0.0059 2E-07 61.2 3.1 38 183-224 2-39 (301)
410 1w36_D RECD, exodeoxyribonucle 95.5 0.035 1.2E-06 62.0 9.6 35 184-218 165-203 (608)
411 2vli_A Antibiotic resistance p 95.5 0.0045 1.5E-07 57.0 2.0 30 182-214 4-33 (183)
412 3a8t_A Adenylate isopentenyltr 95.5 0.0091 3.1E-07 62.0 4.4 36 182-222 39-74 (339)
413 4b4t_M 26S protease regulatory 95.5 0.036 1.2E-06 59.5 9.1 70 181-273 213-282 (434)
414 1kag_A SKI, shikimate kinase I 95.4 0.0065 2.2E-07 55.4 2.8 34 183-221 4-37 (173)
415 1njg_A DNA polymerase III subu 95.4 0.092 3.1E-06 49.1 10.9 29 183-211 45-73 (250)
416 1jjv_A Dephospho-COA kinase; P 95.4 0.0083 2.8E-07 56.6 3.6 32 184-221 3-34 (206)
417 1aky_A Adenylate kinase; ATP:A 95.4 0.0097 3.3E-07 56.9 4.0 34 182-220 3-36 (220)
418 1via_A Shikimate kinase; struc 95.4 0.0083 2.8E-07 55.2 3.3 33 185-222 6-38 (175)
419 2pt5_A Shikimate kinase, SK; a 95.4 0.0084 2.9E-07 54.4 3.3 33 185-222 2-34 (168)
420 3u61_B DNA polymerase accessor 95.4 0.15 5.3E-06 51.3 13.2 39 182-223 47-85 (324)
421 3eph_A TRNA isopentenyltransfe 95.4 0.036 1.2E-06 59.0 8.6 84 183-271 2-97 (409)
422 2qor_A Guanylate kinase; phosp 95.4 0.0066 2.3E-07 57.6 2.7 26 182-207 11-36 (204)
423 1kgd_A CASK, peripheral plasma 95.4 0.0082 2.8E-07 55.9 3.3 25 183-207 5-29 (180)
424 3tr0_A Guanylate kinase, GMP k 95.3 0.009 3.1E-07 56.0 3.5 26 182-207 6-31 (205)
425 3crm_A TRNA delta(2)-isopenten 95.3 0.011 3.9E-07 61.0 4.4 35 183-222 5-39 (323)
426 3foz_A TRNA delta(2)-isopenten 95.3 0.02 6.8E-07 58.9 6.2 35 182-221 9-43 (316)
427 2gk6_A Regulator of nonsense t 95.3 0.032 1.1E-06 62.4 8.3 54 185-241 197-251 (624)
428 2bbw_A Adenylate kinase 4, AK4 95.3 0.011 3.8E-07 57.6 4.0 26 182-207 26-51 (246)
429 1udx_A The GTP-binding protein 95.3 0.045 1.5E-06 58.4 9.0 22 183-204 157-178 (416)
430 3v9p_A DTMP kinase, thymidylat 95.3 0.012 4.2E-07 57.6 4.3 36 182-217 24-63 (227)
431 1zak_A Adenylate kinase; ATP:A 95.2 0.0093 3.2E-07 57.1 3.3 34 182-220 4-37 (222)
432 3tlx_A Adenylate kinase 2; str 95.2 0.014 4.7E-07 57.3 4.6 26 182-207 28-53 (243)
433 1sxj_B Activator 1 37 kDa subu 95.2 0.052 1.8E-06 54.2 8.9 25 186-210 45-69 (323)
434 2if2_A Dephospho-COA kinase; a 95.2 0.0097 3.3E-07 56.0 3.3 31 185-221 3-33 (204)
435 1vht_A Dephospho-COA kinase; s 95.2 0.015 5.1E-07 55.4 4.6 34 182-221 3-36 (218)
436 3bs4_A Uncharacterized protein 95.2 0.051 1.7E-06 54.4 8.5 54 163-223 8-61 (260)
437 3n70_A Transport activator; si 95.1 0.039 1.3E-06 49.3 7.0 36 185-221 26-61 (145)
438 2j41_A Guanylate kinase; GMP, 95.1 0.0091 3.1E-07 55.9 2.8 26 182-207 5-30 (207)
439 1z6t_A APAF-1, apoptotic prote 95.1 0.043 1.5E-06 60.2 8.7 41 182-222 146-190 (591)
440 3nh6_A ATP-binding cassette SU 95.1 0.033 1.1E-06 57.0 7.1 31 178-208 75-105 (306)
441 4b4t_I 26S protease regulatory 95.1 0.074 2.5E-06 57.0 10.1 70 181-273 214-283 (437)
442 2jaq_A Deoxyguanosine kinase; 95.1 0.014 4.8E-07 54.3 3.9 24 185-208 2-25 (205)
443 1zuh_A Shikimate kinase; alpha 95.1 0.014 4.6E-07 53.3 3.7 34 183-221 7-40 (168)
444 3pxi_A Negative regulator of g 95.1 0.025 8.6E-07 64.6 6.7 39 184-222 522-560 (758)
445 1cke_A CK, MSSA, protein (cyti 95.1 0.013 4.6E-07 55.8 3.8 33 183-220 5-37 (227)
446 3be4_A Adenylate kinase; malar 95.0 0.013 4.3E-07 56.2 3.6 33 183-220 5-37 (217)
447 3vfd_A Spastin; ATPase, microt 95.0 0.051 1.8E-06 56.8 8.6 73 182-277 147-219 (389)
448 1e6c_A Shikimate kinase; phosp 95.0 0.012 4.2E-07 53.5 3.3 34 184-222 3-36 (173)
449 1bif_A 6-phosphofructo-2-kinas 95.0 0.017 5.8E-07 62.3 4.8 43 181-223 37-79 (469)
450 2ce7_A Cell division protein F 94.9 0.11 3.9E-06 56.2 11.2 71 183-276 49-119 (476)
451 1t6n_A Probable ATP-dependent 94.9 0.12 4.1E-06 48.9 10.1 38 186-225 54-94 (220)
452 4b4t_J 26S protease regulatory 94.9 0.052 1.8E-06 57.6 8.2 69 182-273 181-249 (405)
453 1lvg_A Guanylate kinase, GMP k 94.9 0.013 4.3E-07 55.6 3.2 26 183-208 4-29 (198)
454 2wjy_A Regulator of nonsense t 94.8 0.047 1.6E-06 63.0 8.2 54 185-241 373-427 (800)
455 4b4t_H 26S protease regulatory 94.8 0.073 2.5E-06 57.5 9.2 70 182-274 242-311 (467)
456 2c5m_A CTP synthase; cytidine 94.8 0.24 8E-06 49.3 11.8 166 183-352 23-260 (294)
457 1sxj_C Activator 1 40 kDa subu 94.8 0.045 1.6E-06 55.9 7.1 26 186-211 49-74 (340)
458 2r2a_A Uncharacterized protein 94.8 0.018 6.1E-07 55.2 3.8 38 183-220 5-48 (199)
459 3ake_A Cytidylate kinase; CMP 94.7 0.016 5.5E-07 54.3 3.3 33 185-222 4-36 (208)
460 3hws_A ATP-dependent CLP prote 94.7 0.051 1.7E-06 56.1 7.3 35 182-219 50-84 (363)
461 2ohf_A Protein OLA1, GTP-bindi 94.7 0.067 2.3E-06 56.7 8.2 22 183-204 22-43 (396)
462 1a5t_A Delta prime, HOLB; zinc 94.7 0.22 7.7E-06 50.8 12.1 27 183-209 24-50 (334)
463 3sfz_A APAF-1, apoptotic pepti 94.7 0.11 3.8E-06 61.4 11.1 40 182-221 146-189 (1249)
464 2vo1_A CTP synthase 1; pyrimid 94.7 0.55 1.9E-05 47.0 14.2 42 182-223 22-65 (295)
465 3fb4_A Adenylate kinase; psych 94.7 0.02 6.9E-07 54.2 3.9 23 185-207 2-24 (216)
466 1ofh_A ATP-dependent HSL prote 94.6 0.029 9.9E-07 55.8 5.1 37 183-222 50-86 (310)
467 3cf0_A Transitional endoplasmi 94.6 0.034 1.2E-06 56.1 5.6 34 182-218 48-81 (301)
468 2xau_A PRE-mRNA-splicing facto 94.6 0.12 4.1E-06 59.3 10.8 120 185-307 111-250 (773)
469 2fz4_A DNA repair protein RAD2 94.6 0.079 2.7E-06 51.6 8.0 87 186-279 111-206 (237)
470 1ak2_A Adenylate kinase isoenz 94.6 0.024 8.1E-07 54.9 4.2 34 182-220 15-48 (233)
471 1z6g_A Guanylate kinase; struc 94.5 0.015 5.2E-07 56.0 2.7 27 181-207 21-47 (218)
472 2zan_A Vacuolar protein sortin 94.5 0.033 1.1E-06 59.7 5.6 36 182-219 166-201 (444)
473 3ney_A 55 kDa erythrocyte memb 94.5 0.02 6.9E-07 54.9 3.5 26 182-207 18-43 (197)
474 2bdt_A BH3686; alpha-beta prot 94.5 0.022 7.5E-07 52.9 3.6 34 184-221 3-36 (189)
475 3gmt_A Adenylate kinase; ssgci 94.5 0.27 9.3E-06 48.2 11.5 36 184-224 9-45 (230)
476 1r6b_X CLPA protein; AAA+, N-t 94.4 0.12 4E-06 58.9 10.3 37 183-222 488-524 (758)
477 2a5y_B CED-4; apoptosis; HET: 94.4 0.13 4.6E-06 56.2 10.3 24 182-205 151-174 (549)
478 3lnc_A Guanylate kinase, GMP k 94.4 0.012 4.2E-07 56.7 1.7 26 182-207 26-52 (231)
479 2pl3_A Probable ATP-dependent 94.4 0.22 7.4E-06 47.7 10.6 40 185-226 64-110 (236)
480 3hu3_A Transitional endoplasmi 94.4 0.077 2.6E-06 57.7 8.1 70 182-274 237-306 (489)
481 3vkw_A Replicase large subunit 94.4 0.12 4.2E-06 55.5 9.5 107 182-305 160-269 (446)
482 1e4v_A Adenylate kinase; trans 94.4 0.032 1.1E-06 53.1 4.5 30 185-219 2-31 (214)
483 2gxq_A Heat resistant RNA depe 94.3 0.23 7.9E-06 46.1 10.4 39 185-225 40-84 (207)
484 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.065 2.2E-06 55.2 7.1 111 184-314 172-283 (330)
485 3cf2_A TER ATPase, transitiona 94.3 0.18 6.2E-06 58.1 11.4 70 181-273 236-305 (806)
486 1iqp_A RFCS; clamp loader, ext 94.3 0.15 5.2E-06 50.8 9.6 25 186-210 49-73 (327)
487 2wkq_A NPH1-1, RAS-related C3 94.3 0.031 1.1E-06 56.1 4.6 22 183-204 155-176 (332)
488 3tui_C Methionine import ATP-b 94.3 0.11 3.8E-06 54.4 8.8 28 181-208 52-79 (366)
489 1ye8_A Protein THEP1, hypothet 94.3 0.029 9.8E-07 52.6 3.9 24 185-208 2-25 (178)
490 3dl0_A Adenylate kinase; phosp 94.3 0.022 7.5E-07 54.1 3.2 34 185-223 2-36 (216)
491 3pxg_A Negative regulator of g 94.3 0.04 1.4E-06 59.4 5.6 26 184-209 202-227 (468)
492 3cr8_A Sulfate adenylyltranfer 94.3 0.028 9.6E-07 62.1 4.4 41 182-222 368-409 (552)
493 3rlf_A Maltose/maltodextrin im 94.2 0.091 3.1E-06 55.4 8.1 28 181-208 27-54 (381)
494 4hlc_A DTMP kinase, thymidylat 94.2 0.043 1.5E-06 52.7 5.1 34 184-218 3-36 (205)
495 2qmh_A HPR kinase/phosphorylas 94.2 0.039 1.3E-06 53.2 4.8 34 182-221 33-66 (205)
496 3oiy_A Reverse gyrase helicase 94.2 0.15 5E-06 53.2 9.7 63 185-250 38-103 (414)
497 2bjv_A PSP operon transcriptio 94.2 0.038 1.3E-06 54.2 4.8 41 185-225 31-71 (265)
498 1hv8_A Putative ATP-dependent 94.2 0.18 6.3E-06 50.7 10.0 39 185-225 46-86 (367)
499 1znw_A Guanylate kinase, GMP k 94.2 0.025 8.5E-07 53.7 3.3 26 182-207 19-44 (207)
500 1qde_A EIF4A, translation init 94.2 0.31 1.1E-05 46.0 11.1 56 185-242 53-114 (224)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=7.5e-91 Score=750.06 Aligned_cols=434 Identities=34% Similarity=0.602 Sum_probs=390.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHH
Q 008282 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (571)
Q Consensus 83 ~m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~ 162 (571)
|||++|+++|.++++++++.+.++|+++++.+++|+.+|+++||+.+++.+|++++++++.+.++..++++.+++.++++
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
++|.+++++....+... .+|.+|+++|++||||||++++||.+|+++|++|+++++|+||+++++|+..+++..+++++
T Consensus 81 ~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 99999999743333332 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc
Q 008282 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (571)
Q Consensus 243 ~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~ 322 (571)
......+|.++++++++.+..++||+|||||||+++.+..++.++..+..+..|++++||+|+++++++.+++..|++.+
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~ 239 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT 239 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC
Confidence 88888899999999999998788999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhH--HHH
Q 008282 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQED--AEE 400 (571)
Q Consensus 323 ~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~--~~~ 400 (571)
++.|||+||+|+++++|.++++...++.||.|+++|++++||++|+|++++++++|+||+.+|+|++++.+++++ ++
T Consensus 240 ~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~- 318 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE- 318 (443)
T ss_dssp TTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-
T ss_pred CCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876 65
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC-CChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChh
Q 008282 401 MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 479 (571)
Q Consensus 401 ~~~k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~-~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~s 479 (571)
+.+++.+|+||++||++|++++.||||+++||+|||||++ ++....+.+++++++|++||+|||++||+||++| ++|
T Consensus 319 ~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~s 396 (443)
T 3dm5_A 319 DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEII--NYS 396 (443)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTTCC-------------------CCCCHHHHHHHHHHHTTSCHHHHHCGGGC--CHH
T ss_pred HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHCCCchhhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhc--ChH
Confidence 8899999999999999999999999999999999999984 5544445678999999999999999999999999 589
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 008282 480 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 524 (571)
Q Consensus 480 R~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (571)
|++|||+||||+++|||+||+||++|++|||+|. +|+|+.|
T Consensus 397 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~----~~~~~~~ 437 (443)
T 3dm5_A 397 RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMN----KRQLSRL 437 (443)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC----SCCCC--
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCHHHH
Confidence 9999999999999999999999999988888774 3555554
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=1.2e-86 Score=716.86 Aligned_cols=421 Identities=34% Similarity=0.563 Sum_probs=379.1
Q ss_pred HHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHh
Q 008282 90 SGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLM 169 (571)
Q Consensus 90 ~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 169 (571)
++|.++++++++.+.++|+++++++++|+.+|+++||+.+++.+|++++++.+.+.++..+++|.++++++++++|.+++
T Consensus 4 ~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L 83 (433)
T 3kl4_A 4 ENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLF 83 (433)
T ss_dssp TTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCC
Q 008282 170 GGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVK 249 (571)
Q Consensus 170 g~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~ 249 (571)
++..........+|++|+++|++||||||++++||.+|+.+|++|+++++|+||+++++|+..+++..|++++......+
T Consensus 84 ~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d 163 (433)
T 3kl4_A 84 GGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN 163 (433)
T ss_dssp CSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC
T ss_pred CccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC
Confidence 97533322223468999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCCc--ccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEE
Q 008282 250 PSQIAKQGLEEAKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGA 327 (571)
Q Consensus 250 p~~v~~~~l~~~~~~~~DvIIIDTpG~l~--~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GV 327 (571)
|..++..++..+.+.+||+|||||||+++ .+..++.++..+..++.|++++||+|+++++++.+++..|++.+++.||
T Consensus 164 p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gV 243 (433)
T 3kl4_A 164 PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSV 243 (433)
T ss_dssp HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEE
Confidence 99999999998877899999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHHHHHc
Q 008282 328 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS 407 (571)
Q Consensus 328 IlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~k~~~ 407 (571)
|+||+|+++++|.++++...++.||.|+++|++++||++|+|++++++++|+||+.+|+|++++.+++++++++++|+.+
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~ 323 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVME 323 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC---------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred C--CCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC-CC---hhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhh
Q 008282 408 A--NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-IT---PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRR 481 (571)
Q Consensus 408 g--~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~-~~---~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~ 481 (571)
| +||++||++|++++.||||+++||+|||||++ ++ +.+.+.+++++++|++||+|||++||+||++| ++||+
T Consensus 324 g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~--~~sr~ 401 (433)
T 3kl4_A 324 GKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNII--DKSRM 401 (433)
T ss_dssp ----CCHHHHHHHHHHHHHCCSSSGGGGTTTCCCCCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGC--CHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCccccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhc--cHHHH
Confidence 9 89999999999999999999999999999985 44 23445678899999999999999999999999 58999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008282 482 KRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512 (571)
Q Consensus 482 ~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~ 512 (571)
+|||+|||++++|||+||+||++|++|||+|
T Consensus 402 ~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 432 (433)
T 3kl4_A 402 RRIAEGSGLEVEEVRELLEWYNNMNRLLKMV 432 (433)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876
No 3
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=1.4e-82 Score=684.19 Aligned_cols=419 Identities=45% Similarity=0.742 Sum_probs=384.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
||++|+++|+++++++.+.+.++|+++++.+++|+.+|+++||+.+++++|++++++++.+.++..+++|.+++.+++++
T Consensus 1 m~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (425)
T 2ffh_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYE 80 (425)
T ss_dssp CCHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~ 243 (571)
+|...+++...++.+. ++.+|+++|++|+||||++.+||.+++.+|++|+++++|+||+++++|+..+++..|++++.
T Consensus 81 ~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 9999998765556665 68899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcC
Q 008282 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (571)
Q Consensus 244 ~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~ 323 (571)
.+...+|.++++++++.++..+||+|||||||+++.+..++.++..+..++.|++++||+|++++++++..++.|++.++
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~ 238 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCC
Confidence 87778899998889988866899999999999999999999999999988999999999999989999999999998999
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHHH
Q 008282 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQK 403 (571)
Q Consensus 324 i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~~ 403 (571)
+.|||+||+|++.++|.++++...+|.||.|+|.|++++|+++|+|++++++++|++|+.+++|++++.+++++++.+.
T Consensus 239 i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~- 317 (425)
T 2ffh_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA- 317 (425)
T ss_dssp CCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC-----------
T ss_pred ceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887766554443
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHH
Q 008282 404 KIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKR 483 (571)
Q Consensus 404 k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~r 483 (571)
+ +|+++|+++||+++.|||++++|++||||+++ +++.+|+++++|++||+|||++||+||++| ++||++|
T Consensus 318 ---~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~----~~~~~~~~~~~~~~i~~smt~~e~~~p~~~--~~sr~~r 387 (425)
T 2ffh_A 318 ---K-ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ----GLKVDEKAIKRLEAIVLSMTPEERKDPRIL--NGSRRKR 387 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSC----CTTSCHHHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHH
T ss_pred ---H-hcCHHHHHHHHHHhhCcCChhhhhccCCCchh----hccccHHHHHHHHHHHHcCCHHHhcCcccc--ChHHHHH
Confidence 2 89999999999999999999999999999973 234568899999999999999999999999 5799999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 008282 484 VAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 515 (571)
Q Consensus 484 ia~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~ 515 (571)
||+|||++++|||+||+||++|++|||+|.+.
T Consensus 388 ia~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~ 419 (425)
T 2ffh_A 388 IAKGSGTSVQEVNRFIKAFEEMKALMKSLEKK 419 (425)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998753
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=2.9e-82 Score=684.82 Aligned_cols=428 Identities=48% Similarity=0.784 Sum_probs=390.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
||++|+++|++++++|++.+.++|+++++.+++|+.+|+++||+++++++|++++++++.+.++..+++|.+++.+++++
T Consensus 1 m~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
T 2xxa_A 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (433)
T ss_dssp ---CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
+|.+++++...++.+...+|++|+++|++||||||++++||.+|+++ |++|++||+|+||+++++|+..++...|++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp HHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 99999997665666665678999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc
Q 008282 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (571)
Q Consensus 243 ~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~ 322 (571)
..+...+|.++++.++..+.+.+||+|||||||+++.+..++.++..+..++.|+++++|+|+++++++...++.|+..+
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l 240 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccC
Confidence 88777889999888998887679999999999999988889999999988889999999999998999999999999889
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHH
Q 008282 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (571)
Q Consensus 323 ~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~ 402 (571)
++.|||+||+|+++++|.++++...++.||.|+|.|++++++.+|+|+.++++++|++|+.+++|++++.+++++++++.
T Consensus 241 ~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~ 320 (433)
T 2xxa_A 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320 (433)
T ss_dssp CCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHHHcC-CCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCChhhhh--HHHhhhhhHHHHHhCCChHhhcCccccCCChh
Q 008282 403 KKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPV 479 (571)
Q Consensus 403 ~k~~~g-~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~~~~~~--~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~s 479 (571)
+|+.+| +|+++|+++||+++.+||++++|++||||++++.+ +.+ .++++++++++||+|||++||+||++| ++|
T Consensus 321 ~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~-~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~--~~s 397 (433)
T 2xxa_A 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPD-NVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGS 397 (433)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC--CHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhhh-hhhccccHHHHHHHHHHHHcCCHHHhcCcccc--CHH
Confidence 999999 89999999999999999999999999999987642 333 567889999999999999999999999 579
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 008282 480 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 514 (571)
Q Consensus 480 R~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~ 514 (571)
|++|||+|||++++|||+||+||++|++|||+|.+
T Consensus 398 r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~ 432 (433)
T 2xxa_A 398 RKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKK 432 (433)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998763
No 5
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=2.4e-80 Score=679.69 Aligned_cols=476 Identities=28% Similarity=0.515 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHH
Q 008282 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (571)
Q Consensus 83 ~m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~ 162 (571)
|||++|+++|.+++++|.+.+.++|+++++++++|+.+|+++||+.+++++|++++++++.+.++.++++|.+++.++++
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
++|.+++++...++.+...++++|+|+|++||||||++++||.+|+++|++|++|++|+||+++++|+..++...+++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999999866666655567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc
Q 008282 243 TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (571)
Q Consensus 243 ~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~ 322 (571)
......+|.+++++++..+.+.+||+|||||||+++.+..++.++..+..++.|+.+++|+|++.++++...+..|++.+
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~ 240 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc
Confidence 87777889999888998887789999999999999888888888888877778999999999988877778888888778
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHH
Q 008282 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (571)
Q Consensus 323 ~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~ 402 (571)
++.+||+||+|.+++++.++++.+.++.||.|++.|++++++.+|+|..++++++|+||+.+|+|.+.+. .+++++++.
T Consensus 241 ~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~ 319 (504)
T 2j37_W 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALI 319 (504)
T ss_dssp CCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTT
T ss_pred CceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999988877 455567788
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC--CChhhhhHHHhhhhhHHHHHhCCChHhhcC---ccccCCC
Q 008282 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAES 477 (571)
Q Consensus 403 ~k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~--~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~---p~~~~~~ 477 (571)
+|+.+|+|+++||++|++++.+||++++|++||||++. ++..+...+++.++++++||+|||++||+| |++|..+
T Consensus 320 ~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~ 399 (504)
T 2j37_W 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQ 399 (504)
T ss_dssp TSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCC
Confidence 99999999999999999999999999999999999987 643344457889999999999999999999 9999545
Q ss_pred hhhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCC-chhh-HH-HHh-ccccCCCCchhhcccc-cc
Q 008282 478 PVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV---MEGGSLP-ALSN-LE-DAL-KSEQKAPPGTARRKRR-SE 549 (571)
Q Consensus 478 ~sR~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~-~~-~~~-~~~~~~~~~~~~~~~~-~~ 549 (571)
+||++|||+|||++++|||+||+||++|++|||+|.+. +++|.|+ .++. .+ +.+ +..+.++|.|.+.-.+ .+
T Consensus 400 ~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (504)
T 2j37_W 400 PGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAG 479 (504)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcCCCch
Confidence 79999999999999999999999999999998887652 1234444 2211 11 112 5668888999887655 67
Q ss_pred ccccccCCCC
Q 008282 550 SRRQFVDPAS 559 (571)
Q Consensus 550 ~~~~~~~~~~ 559 (571)
+++.++++..
T Consensus 480 ~~~~~~~~~~ 489 (504)
T 2j37_W 480 LQSMMRQFQQ 489 (504)
T ss_dssp SSHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 7777777754
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=7.6e-76 Score=634.56 Aligned_cols=423 Identities=38% Similarity=0.658 Sum_probs=369.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHH
Q 008282 85 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDE 164 (571)
Q Consensus 85 ~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 164 (571)
|++|+++|+++++++.+.+.++|+++++.+++++.+|+++||+..++++|++++++...+.++..++++.+++.++++++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999888888999999899999999
Q ss_pred HHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecC
Q 008282 165 LVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 244 (571)
Q Consensus 165 L~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~ 244 (571)
|.+++++...++.+...+|.+|+|+|++||||||++++||.+++++|++|++|++|+||+++++|+..++...|++++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999876555655545678999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc-
Q 008282 245 G-TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI- 322 (571)
Q Consensus 245 ~-~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~- 322 (571)
. ...+|.+++..++..+ .+||+|||||||+++.+..++.++..+..++.|+.+++|+|++.++++...+..|+..+
T Consensus 161 ~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~ 238 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVG 238 (432)
T ss_dssp SSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhccc
Confidence 5 4556666666777765 78999999999999988889999988887788999999999998988888888898878
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchhHHHHHHHHHHHhchhHHHHHH
Q 008282 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ 402 (571)
Q Consensus 323 ~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gdv~~l~e~a~e~l~e~~~~~~~ 402 (571)
++.++|+||+|.+.+++.++++...++.|+.|+|.|++++|+.+|+|..++++++|+||+.++++++.+.+++++ +++.
T Consensus 239 ~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~ 317 (432)
T 2v3c_C 239 EIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESI 317 (432)
T ss_dssp SCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTH
T ss_pred CCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHH
Confidence 889999999999988898999999999999999999999999999999999999999999999999999988877 8899
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCC-hhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhh
Q 008282 403 KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKIT-PAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRR 481 (571)
Q Consensus 403 ~k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~-~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~ 481 (571)
+|+..++|+++|++.|++++.+|||+++||+||||++.+. ..+.+..++++++|++||+|||++||+||++| ++||+
T Consensus 318 ~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i--~~sr~ 395 (432)
T 2v3c_C 318 DAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII--KASRI 395 (432)
T ss_dssp HHHCCSCCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC--CHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc--CHHHH
Confidence 9999999999999999999999999999999999987642 22333457789999999999999999999999 58999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008282 482 KRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512 (571)
Q Consensus 482 ~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~ 512 (571)
+|||+|||++++|||+||+||++|++||+++
T Consensus 396 ~rI~~gsg~~~~~v~~ll~~~~~~~~~~~~~ 426 (432)
T 2v3c_C 396 RRIARGSGTTENDVREVLRYYETTKNAIDKL 426 (432)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998887764
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.9e-44 Score=371.89 Aligned_cols=293 Identities=37% Similarity=0.594 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHH
Q 008282 86 GQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDEL 165 (571)
Q Consensus 86 ~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL 165 (571)
++|+++|+++++++.+.+.++|+++++.+++|+.+|+++||+.+++++|+++++++..+.++.+++++.+++.+++.++|
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHhcCCccc-ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecC
Q 008282 166 VKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA 244 (571)
Q Consensus 166 ~~llg~~~~~-l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~ 244 (571)
...+++...+ +.+... +.+++++|++|+||||++.+||.+++.+|++|+++++|+||+++.+|+..+++..|++++..
T Consensus 81 ~~~~~~~~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9999876545 555544 89999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCc--ccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc
Q 008282 245 GTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQ--IDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI 322 (571)
Q Consensus 245 ~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~--~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~ 322 (571)
....+|.++++++++.+++++||+|||||||+++ .+..++.++..+..+..++.+++|+|+.+++++...++.|++.+
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~ 239 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS 239 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhC
Confidence 6667899998889998877899999999999999 88888999988888888999999999988888888888898888
Q ss_pred CeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCc
Q 008282 323 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGM 379 (571)
Q Consensus 323 ~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~ 379 (571)
++.|+|+||+|.+.++|.++++...++.||.|++.|++++|+.+|+|++++++++|+
T Consensus 240 ~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 240 KIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp TTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 8
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=2.8e-42 Score=360.29 Aligned_cols=298 Identities=34% Similarity=0.571 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHHHh-------------------hCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Q 008282 82 AEMFGQLTSGLEAAWNKL-------------------KGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQA 142 (571)
Q Consensus 82 ~~m~~~l~~~l~~~~~~l-------------------~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~ 142 (571)
+.||+.|.++|+++.+++ .+...++++++++.+++|+.+|+++||+.+++++|++++++++
T Consensus 5 ~~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~ 84 (328)
T 3e70_C 5 ASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKL 84 (328)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467777777777666532 2367899999999999999999999999999999999999999
Q ss_pred hhccccCCCChhhHHHHHHHHHHHHHhcCCcccccc-----cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 008282 143 VGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVF-----AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (571)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~-----~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV 217 (571)
.+.++..+.++.+.+.++++++|.+++++.. ++.+ ...+|.+++++|++|+||||++.+||.++...|.+|.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 85 VGKKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp TTCEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhcccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 9988888889999999999999999998753 2222 345789999999999999999999999999999999999
Q ss_pred eccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCc
Q 008282 218 AGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT 297 (571)
Q Consensus 218 d~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd 297 (571)
++|+||+++.+|+..++...|++++......+|...+.+.+......++|+++|||+|+.+.+..++.+|..+.+++.|+
T Consensus 164 g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~d 243 (328)
T 3e70_C 164 ASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPN 243 (328)
T ss_dssp EECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCS
T ss_pred eecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999988877888988888888777667899999999999998889999999999999999
Q ss_pred eEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhcc
Q 008282 298 EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 377 (571)
Q Consensus 298 ~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~l 377 (571)
+.++|+|+++++++.++++.|+...+++++|+||+|+++++|.++++...++.||.|+++|++++|+++|+|++++++++
T Consensus 244 e~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~ll 323 (328)
T 3e70_C 244 LVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIF 323 (328)
T ss_dssp EEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred CCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cch
Q 008282 378 GMG 380 (571)
Q Consensus 378 G~g 380 (571)
|..
T Consensus 324 g~~ 326 (328)
T 3e70_C 324 GEE 326 (328)
T ss_dssp C--
T ss_pred CCc
Confidence 854
No 9
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=1.5e-41 Score=349.77 Aligned_cols=295 Identities=49% Similarity=0.794 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHH
Q 008282 84 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRD 163 (571)
Q Consensus 84 m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (571)
||+.|+++|+++++++.++..++++++.+.|++++..|+.+|++..+++++++++.....+..+..+.++.+++.+++.+
T Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (295)
T 1ls1_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE 80 (295)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998887777655456777788889999
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT 243 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~ 243 (571)
.+...++....++.+. ++.+++++|++|+||||++.+||..++..|.+|+++++|++|+++.+|+..+.+..|++++.
T Consensus 81 ~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 9998887643445555 67899999999999999999999999999999999999999999999998888888999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcC
Q 008282 244 AGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIG 323 (571)
Q Consensus 244 ~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~ 323 (571)
.+...+|.++.+.++..+...+||+|||||||+++.|...+.++..+...+.|+.+++|+|+.+++++.+.++.|++.++
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~ 238 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCC
Confidence 76667898888888888765789999999999999998999999999888899999999999888888888899998899
Q ss_pred eeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCch
Q 008282 324 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 380 (571)
Q Consensus 324 i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~g 380 (571)
+.|+|+||+|++.++|.++++...+++||.|+++||+++|+++|+|++++++++|||
T Consensus 239 i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp CCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 10
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=3e-41 Score=349.30 Aligned_cols=290 Identities=34% Similarity=0.565 Sum_probs=252.3
Q ss_pred ccchhhhhccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhh
Q 008282 65 SKSVTIRRNGRRRLIVRAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVG 144 (571)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~ 144 (571)
.+..|++.|++.||... .++|+++|.+++. +. .+++ +.+++|+.+|+++||+.+++++|++++++
T Consensus 10 ~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~---~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~---- 74 (306)
T 1vma_A 10 HHHMGLFDFLKKGLQKT---KETFFGRVVKLLK---GK-KLDD----ETREELEELLIQADVGVETTEYILERLEE---- 74 (306)
T ss_dssp ----CHHHHHHHHHHHH---HHHTHHHHHHHHT---TC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT----
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHhc---CC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh----
Confidence 34567888888887665 3566666665554 44 7776 57899999999999999999999999865
Q ss_pred ccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 145 VGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 145 ~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.++. +.++++++|.+++++.. ++.+...++.+|+++|++|+||||++.+||..++..|.+|+++++|+||+
T Consensus 75 ------~~~~--~~~~~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 75 ------KDGD--ALESLKEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 145 (306)
T ss_dssp ------CCSC--HHHHHHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred ------cCHH--HHHHHHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH
Confidence 2344 88999999999998754 56555567899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhh------CCce
Q 008282 225 AAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTE 298 (571)
Q Consensus 225 ~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~------~pd~ 298 (571)
++++|+..+++..+++++......+|..++.+++..+...+||+|||||||+++.+..++.++..+..++ .|++
T Consensus 146 ~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~ 225 (306)
T 1vma_A 146 AAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHE 225 (306)
T ss_dssp HHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSE
T ss_pred HHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcE
Confidence 9999999999999999988766778888877778776668999999999999988889999998888775 3889
Q ss_pred EEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 299 VLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 299 vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
+++|+|++++++++..++.|++..++.|+|+||+|+++++|.++++...+++||.|+++||+++|+++|+|++++++++|
T Consensus 226 vllVlda~t~~~~l~~a~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 226 TLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999998889999888999999999999999999999999999999999999999999999999999999987
No 11
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=3.4e-40 Score=343.46 Aligned_cols=280 Identities=28% Similarity=0.471 Sum_probs=241.5
Q ss_pred HHHHHHHHHHhh-CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHH
Q 008282 89 TSGLEAAWNKLK-GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVK 167 (571)
Q Consensus 89 ~~~l~~~~~~l~-~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ 167 (571)
+++|.+.++++. +...+++ +.+++|+.+|+++||+++++++|+++++++..+.++.. .+.++++++|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 84 (320)
T 1zu4_A 15 AFNFSKDIKKLSKKYKQADD----EFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDALVESLYQ 84 (320)
T ss_dssp HHHHHHHHHHHHHTCCCCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHHHHHHHH
Confidence 334444444443 3467776 36899999999999999999999999999876654321 288899999999
Q ss_pred HhcCCc-----ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhh---ccCC
Q 008282 168 LMGGEV-----SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE---QVGV 239 (571)
Q Consensus 168 llg~~~-----~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~---~~gv 239 (571)
++++.. .++.+...++.+|+++|++|+||||++.+||.+++..|.+|+++++|+||+++.+|+..+++ ..++
T Consensus 85 ~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l 164 (320)
T 1zu4_A 85 AYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKV 164 (320)
T ss_dssp HHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTE
T ss_pred HhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCc
Confidence 998765 46767667789999999999999999999999999999999999999999999999988877 7788
Q ss_pred cee-cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhC------CceEEEEEeCcchHHHH
Q 008282 240 PVY-TAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAA 312 (571)
Q Consensus 240 ~v~-~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~------pd~vlLVvda~~gq~a~ 312 (571)
+++ ......+|...+.+.+.....++||+|||||||+++.+..++.++..+..++. |+.+++|++++++++++
T Consensus 165 ~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l 244 (320)
T 1zu4_A 165 DLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGV 244 (320)
T ss_dssp EEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHH
T ss_pred eEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHH
Confidence 888 44445678777777777666689999999999999988889999988777664 78999999999889888
Q ss_pred HHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 313 ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 313 ~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
..++.|++.+++.|+|+||+|++.++|.++++...++.||.|++.||+++|+++|+|+.++++++|
T Consensus 245 ~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 245 IQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp HHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred HHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 888899988999999999999999999999999999999999999999999999999999999998
No 12
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=1.7e-37 Score=337.59 Aligned_cols=272 Identities=37% Similarity=0.628 Sum_probs=242.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCC
Q 008282 102 EETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKS 181 (571)
Q Consensus 102 ~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~ 181 (571)
...+++ +.+++|+.+|+++||+..++++|+++++++..+. ++++.+++.++++++|.++++....++.+.-.
T Consensus 220 ~~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~l~~~~~~Isl~i~ 291 (503)
T 2yhs_A 220 GKKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRK----QLRDAEALYGLLKEEMGEILAKVDEPLNVEGK 291 (503)
T ss_dssp TCBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH----TCCBGGGHHHHHHHHHHHHHHTTBCCCCCCSC
T ss_pred cCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHhCCCCCCceeecc
Confidence 355664 4689999999999999999999999999987664 45677889999999999999876666777667
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++.+++|+|++||||||++.+||.++...|.+|.++++|+||.++.+|+..++...++.++......++...+.+.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 78999999999999999999999999988999999999999999899998887778888887766667887888888877
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhC------CceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~------pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
...++|+|||||+|+++.+..++.+|..+..++. |+.++||+|++++++++.+++.|+..++++++|+||+|++
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGT 451 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEECGGGC
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 7789999999999999999999999887766543 8899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccCchh
Q 008282 336 SRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 381 (571)
Q Consensus 336 ~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG~gd 381 (571)
.++|.+++++..+++||.|+|+|++++||.+|++++|+++++|+.+
T Consensus 452 akgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~~ 497 (503)
T 2yhs_A 452 AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497 (503)
T ss_dssp SCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC--
T ss_pred ccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998653
No 13
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.4e-37 Score=325.19 Aligned_cols=289 Identities=33% Similarity=0.554 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHHHHhh-------CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhh
Q 008282 83 EMFGQLTSGLEAAWNKLK-------GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQ 155 (571)
Q Consensus 83 ~m~~~l~~~l~~~~~~l~-------~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~ 155 (571)
.||+.|+++|+++.+++. +...+ ++++.+++|+.+|+++||+.+++++|++++++++.+.+ +.+.+
T Consensus 55 ~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~----~~~~~ 127 (359)
T 2og2_A 55 SDVEKVFSGFSKTRENLAVIDELLLFWNLA---ETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGS 127 (359)
T ss_dssp CHHHHHHHHTHHHHHHHTHHHHHHTTCCGG---GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHH
Confidence 588999999998888775 33433 47889999999999999999999999999999987764 35778
Q ss_pred HHHHHHHHHHHHHhcCCc--ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHh
Q 008282 156 QLVKIVRDELVKLMGGEV--SELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVIL 233 (571)
Q Consensus 156 ~~~~~v~~eL~~llg~~~--~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~ 233 (571)
++.++++++|.++++... .++.+...++.+++++|++||||||++.+||..+...+.+|.++++|+||+++++|+..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~ 207 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHH
Confidence 899999999999998765 566666667899999999999999999999999998899999999999999999999988
Q ss_pred hhccCCceecCCCC-CCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhh------CCceEEEEEeCc
Q 008282 234 GEQVGVPVYTAGTE-VKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAM 306 (571)
Q Consensus 234 ~~~~gv~v~~~~~~-~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~------~pd~vlLVvda~ 306 (571)
+...+++++..... .+|...+.+.+......++|++++||+|+.+.+...+.+|.....++ .|++++||+|++
T Consensus 208 ~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpt 287 (359)
T 2og2_A 208 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 287 (359)
T ss_dssp HHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGG
T ss_pred HHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 88888998877666 78887787777765556789999999999998888888887544433 488999999999
Q ss_pred chHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 307 TGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 307 ~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
++++...++..|+...++++||+||+|+++++|.+++++..++.||.|++.|++++||++|+|++++++++|
T Consensus 288 tglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 288 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp GGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 999998999999888899999999999999999999999999999999999999999999999999999875
No 14
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=6.6e-38 Score=324.03 Aligned_cols=284 Identities=35% Similarity=0.595 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHH
Q 008282 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (571)
Q Consensus 83 ~m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~ 162 (571)
.||++|+++|+++++++.++..+++ +|++.+++|+.+|+++||+.+++++|+++++++.. +++.++++
T Consensus 2 ~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 69 (304)
T 1rj9_A 2 GFFDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVK 69 (304)
T ss_dssp --------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 4899999999999999998887888 88889999999999999999999999999987642 45678899
Q ss_pred HHHHHHhcCCcc-----cccccC-------CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHH
Q 008282 163 DELVKLMGGEVS-----ELVFAK-------SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL 230 (571)
Q Consensus 163 ~eL~~llg~~~~-----~l~~~~-------~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL 230 (571)
++|.+++++... ++.+.. .++.+++++|++||||||++.+||..+...+.+|.+.++|+||+++.+|+
T Consensus 70 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql 149 (304)
T 1rj9_A 70 EKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQL 149 (304)
T ss_dssp HHHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHH
T ss_pred HHHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHH
Confidence 999999987543 344322 25789999999999999999999999998899999999999999988999
Q ss_pred HHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhh------CCceEEEEEe
Q 008282 231 VILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVD 304 (571)
Q Consensus 231 ~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~------~pd~vlLVvd 304 (571)
..++...+++++......+|...+.+.+......++|++++||+|+.+.+..++.++.....++ .|+.+++|+|
T Consensus 150 ~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD 229 (304)
T 1rj9_A 150 SEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229 (304)
T ss_dssp HHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred HHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 8888778888887776778887777777665556899999999999988888888887665443 4888999999
Q ss_pred CcchHHHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 305 AMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 305 a~~gq~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
+++++++.+.+..|+...++++||+||.|+++++|.++++...++.||.|+|+||+++|+++|+|++++++++|
T Consensus 230 a~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 230 AVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp TTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999987
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-34 Score=297.92 Aligned_cols=271 Identities=34% Similarity=0.574 Sum_probs=234.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCc--ccccc
Q 008282 101 GEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEV--SELVF 178 (571)
Q Consensus 101 ~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~--~~l~~ 178 (571)
+...++ +++.+++|+.+|+++||+.+++++|+++++++..+.+ +.+.+++.++++++|.+++++.. .++.+
T Consensus 23 ~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~ 95 (302)
T 3b9q_A 23 FWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGSEIKDALKESVLEMLAKKNSKTELQL 95 (302)
T ss_dssp TCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHHHHHHHHHHHHHHHHCC--CCCSCCC
T ss_pred CCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHHhCCccccccccc
Confidence 455554 6788999999999999999999999999999887654 35678899999999999998754 46666
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCC-CCHHHHHHHH
Q 008282 179 AKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTE-VKPSQIAKQG 257 (571)
Q Consensus 179 ~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~-~~p~~v~~~~ 257 (571)
...++.+++++|++||||||++.+||..+...+.+|.+.++|+||+++.+|+..++...+++++..... .+|...+.+.
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 666789999999999999999999999999889999999999999999999998888788988876666 7787777777
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhh------CCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEcc
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVL------NPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 331 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~------~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNK 331 (571)
+......++|++++||+|+.+.....+.+|......+ .|++++||+|++++++...++..|+...+++++|+||
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTK 255 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEEC
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCEEEEeC
Confidence 7765556789999999999988888888887544433 4888999999989998888888998888999999999
Q ss_pred CCCCCChhHHHHHHHHhCCCeEEEecCCCCCCCccCCchhHhhhccC
Q 008282 332 LDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 378 (571)
Q Consensus 332 lD~~~~~g~~lsi~~~~g~PI~fig~Ge~v~dl~~f~p~~~~~r~lG 378 (571)
+|++.++|.+++++..++.||.|++.|++++|+++|+|++++++++|
T Consensus 256 lD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 256 LDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp CSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998875
No 16
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=6.5e-38 Score=278.44 Aligned_cols=115 Identities=25% Similarity=0.502 Sum_probs=100.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCchhHHhhcCC-CCCC-CChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChh
Q 008282 402 QKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPV 479 (571)
Q Consensus 402 ~~k~~~g~~~ledl~~ql~~~~k~G~~~~i~~m~P-g~~~-~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~s 479 (571)
.+++.+|+||++||++|++++.||||+++|++||| |+++ ++..+++.+|+++++|++||+|||++||+||+|| ++|
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii--~~S 79 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLGLKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKII--DSS 79 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCCSSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGC--CHH
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchhhccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhc--CHH
Confidence 35788899999999999999999999999999999 9987 6533455678999999999999999999999999 489
Q ss_pred hhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 008282 480 RRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 522 (571)
Q Consensus 480 R~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 522 (571)
|++|||+||||+++|||+||+||++|++|||+|. +|++|
T Consensus 80 R~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~----~g~~~ 118 (119)
T 2jqe_A 80 RIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMK----KNKLP 118 (119)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCC----SCCCC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc----cCCCC
Confidence 9999999999999999999999999977776554 45666
No 17
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=3.6e-37 Score=267.98 Aligned_cols=103 Identities=41% Similarity=0.678 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHhhcCCCCCCCCh-hhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHHhhcc
Q 008282 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQD 487 (571)
Q Consensus 409 ~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~~~~-~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~ria~g 487 (571)
+||++||++|++++.||||+++|++||||+++++. .+.+.+++++++|++||+|||++||+||+|| ++||++|||+|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii--~~SR~~RIA~G 78 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAG 78 (105)
T ss_dssp CCCHHHHHHHHTC----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCcccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhc--CHHHHHHHHcc
Confidence 59999999999999999999999999999997753 2344678899999999999999999999999 57999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 008282 488 SGKTEQQVSQLVAQLFQMRVRMKNLM 513 (571)
Q Consensus 488 sG~~~~~v~~l~~~~~~~~~~~~~~~ 513 (571)
|||+++|||+||+||++|++|||+|.
T Consensus 79 SG~~v~eVn~LLkqf~~m~kmmk~m~ 104 (105)
T 1hq1_A 79 SGMQVQDVNRLLKQFDDMQRMMKKMK 104 (105)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875
No 18
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=6.5e-37 Score=274.52 Aligned_cols=109 Identities=27% Similarity=0.543 Sum_probs=95.9
Q ss_pred HcCCCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC--CChhhhhHHHhhhhhHHHHHhCCChHhhcC---ccccCCChhh
Q 008282 406 MSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVR 480 (571)
Q Consensus 406 ~~g~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~--~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~---p~~~~~~~sR 480 (571)
..|+||++||++|++++.||||+++||+||||+++ ++..+.+.+|+++++|++||+|||++||+| |+||+.++||
T Consensus 11 ~~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~SR 90 (129)
T 1mfq_C 11 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGR 90 (129)
T ss_dssp CCSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTHH
T ss_pred ccCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChHH
Confidence 35799999999999999999999999999999987 654445678999999999999999999999 9999444799
Q ss_pred hHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 008282 481 RKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 514 (571)
Q Consensus 481 ~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~~~ 514 (571)
++|||+||||+++|||+||+||++|++|||+|.+
T Consensus 91 k~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~ 124 (129)
T 1mfq_C 91 IQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 124 (129)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998764
No 19
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=1.7e-36 Score=265.72 Aligned_cols=104 Identities=27% Similarity=0.558 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHhhcCCCCCC-C-ChhhhhHHHhhhhhHHHHHhCCChHhhcC---ccccCCChhhhHH
Q 008282 409 NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-I-TPAQVREAEKSLKIMEAMIEAMTPEEREK---PELLAESPVRRKR 483 (571)
Q Consensus 409 ~~~ledl~~ql~~~~k~G~~~~i~~m~Pg~~~-~-~~~~~~~~~~~~~~~~~ii~sMt~~Er~~---p~~~~~~~sR~~r 483 (571)
+||++||++|++++.||||+++|++||||+++ + +..+.+.+++++++|++||+|||++||+| |+||+.++||++|
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~R 80 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR 80 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHHH
Confidence 59999999999999999999999999999987 5 43445567899999999999999999999 9999655799999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008282 484 VAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512 (571)
Q Consensus 484 ia~gsG~~~~~v~~l~~~~~~~~~~~~~~ 512 (571)
||+||||+++|||+||+||++|++|||+|
T Consensus 81 IA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 81 VARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998874
No 20
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=5.7e-33 Score=286.03 Aligned_cols=259 Identities=24% Similarity=0.330 Sum_probs=212.1
Q ss_pred hhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEE
Q 008282 107 KENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVI 186 (571)
Q Consensus 107 ~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI 186 (571)
..++++.+++++.+|+++||+.+++++|++++++...+.. ..++ +.+.++++++|.++++... ++.+. .++.++
T Consensus 35 ~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~l~~~~-~~~~~-~~g~vi 108 (296)
T 2px0_A 35 QSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG---GLTE-ENVVGKLQEILCDMLPSAD-KWQEP-IHSKYI 108 (296)
T ss_dssp ----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS---CCCT-TTHHHHHHHHHHTTSCCGG-GSCCC-CCSSEE
T ss_pred ccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc---CCCH-HHHHHHHHHHHHHHhCCcc-ccccc-CCCcEE
Confidence 3356778999999999999999999999999943333322 3344 6788999999999987643 23332 356799
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhCC
Q 008282 187 LLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKKN 265 (571)
Q Consensus 187 ~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~~ 265 (571)
+++|++|+||||++.+||.+++. +|++|+++++|+||+++.+++..+++..|++++.. .++.+ ++.++..+ .+
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~al~~~--~~ 182 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQAKELF--SE 182 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHHHHHG--GG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHHHHHh--cC
Confidence 99999999999999999999985 89999999999999999999999999999887653 23443 45566544 68
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH-HHHHHHHHhhhhcCeeEEEEccCCCCCChhHHHHH
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDSRGGAALSV 344 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i~GVIlNKlD~~~~~g~~lsi 344 (571)
+|+|||||||+.+.+...+.++..+.....++++++|+|++.++ ++...+..|. .+++.|+|+||+|++.++|.++++
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~ 261 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNI 261 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHH
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHH
Confidence 99999999999998888888887765544578899999998774 4444455666 678899999999999999999999
Q ss_pred HHHhCCCeEEEecCCCC-CCCccCCchhHhhhccC
Q 008282 345 KEVSGKPIKLVGRGERM-EDLEPFYPDRMAGRILG 378 (571)
Q Consensus 345 ~~~~g~PI~fig~Ge~v-~dl~~f~p~~~~~r~lG 378 (571)
...++.||.|++.|+++ +|+.+|+++.++++++|
T Consensus 262 ~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 262 LAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 99999999999999999 89999999999999886
No 21
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.93 E-value=8.4e-27 Score=187.33 Aligned_cols=66 Identities=38% Similarity=0.509 Sum_probs=61.7
Q ss_pred hhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008282 445 QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 512 (571)
Q Consensus 445 ~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~ria~gsG~~~~~v~~l~~~~~~~~~~~~~~ 512 (571)
+.+.++++|+++++||+|||++||+||+|| ++||++|||+|||++++|||+||+||++|++|||+|
T Consensus 4 ~~~~~e~~lkr~~aII~SMT~~Er~nP~ii--~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 4 NDFLEQKVLVRMEAIINSMTMKERAKPEII--KGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHHHCCHHHHHHHHHHTSCHHHHHCGGGC--CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHhCcccc--CHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 445678999999999999999999999999 479999999999999999999999999999999875
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.62 E-value=1.3e-14 Score=138.61 Aligned_cols=151 Identities=21% Similarity=0.177 Sum_probs=101.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
++|+|+ +++|+||||++.+||.+|+++|++|++||+|++..... .+ .....+++++.... +.+.+.++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~-~~--~~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN-WS--KAGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH-HH--TTSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH-HH--hcCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 467777 66999999999999999999999999999998765432 11 12344566765532 44566777765
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-chHHHHHHHHHh------hhhcCeeEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TGQEAAALVTTF------NIEIGITGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-~gq~a~~~~~~f------~~~~~i~GVIlNKlD~~ 335 (571)
+.||+|||||||.... .... +.. ..|.+++|+.+. ....+......+ +..+.+ ++|+|++|..
T Consensus 74 -~~yD~viiD~~~~~~~--~~~~----~l~--~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSV--ITSA----AVM--VSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSH--HHHH----HHH--HCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCH--HHHH----HHH--HCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 6799999999998742 1111 111 147888888763 223333333332 223455 9999999965
Q ss_pred CC-hhHHHHHHHHhCCCe
Q 008282 336 SR-GGAALSVKEVSGKPI 352 (571)
Q Consensus 336 ~~-~g~~lsi~~~~g~PI 352 (571)
.. ...+....+.++.|+
T Consensus 144 ~~~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKA 161 (206)
T ss_dssp EEEEHHHHHHHHHHTCCB
T ss_pred chHHHHHHHHHHHcCCce
Confidence 43 345566666788877
No 23
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.60 E-value=1.2e-14 Score=144.98 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=101.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH-------------HHHHHhh--------hccCCce
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI-------------DQLVILG--------EQVGVPV 241 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~-------------dqL~~~~--------~~~gv~v 241 (571)
++|+|+ +++|+||||++++||.+|+++|++|++||+|++.+... +.+.... ...++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 466665 77999999999999999999999999999999654321 1111000 0124445
Q ss_pred ecCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHH
Q 008282 242 YTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL 314 (571)
Q Consensus 242 ~~~~~~~~p-----~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~ 314 (571)
++.....+. .+.+...++.+. .+||+|||||||..... ... +.. ..|.+++|+.+... ..+...
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~~~----~~~--~ad~vi~v~~~~~~~~~~~~~~ 153 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--AVI----AIA--AAQELLLVVNPEISSITDGLKT 153 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--HHH----HHH--HSSEEEEEECSSHHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--HHH----HHH--HCCEEEEEeCCChhHHHHHHHH
Confidence 542211111 233455666665 68999999999987521 111 111 24788888887432 333333
Q ss_pred HHHhhh-hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 315 VTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 315 ~~~f~~-~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
...+.. ...+.|+|+|+++.......+..+.+.++.|+.
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCEE
T ss_pred HHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCeE
Confidence 333322 356789999999976554455666777888873
No 24
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.60 E-value=1.3e-14 Score=148.40 Aligned_cols=148 Identities=24% Similarity=0.323 Sum_probs=99.3
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------hh------------hccCC
Q 008282 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LG------------EQVGV 239 (571)
Q Consensus 182 ~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------~~------------~~~gv 239 (571)
++++|+|++. +|+||||++++||..|++.|++|++||+|+.++.....+.. +. ...++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 4578888855 99999999999999999999999999999988754332210 00 01244
Q ss_pred ceecCCCC-CCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc--chHHH
Q 008282 240 PVYTAGTE-VKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEA 311 (571)
Q Consensus 240 ~v~~~~~~-~~p~~v-----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~--~gq~a 311 (571)
.+++.+.. .+|.++ +.+.++.++ +.||+|||||||.+...... .+.. ..|.+++|+.+. ....+
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~-----~l~~--~aD~vllVv~~~~~~~~~~ 242 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-----IVGR--HVGTTLMVARYAVNTLKEV 242 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-----HHTT--TCSEEEEEEETTTSBHHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHH-----HHHH--HCCeEEEEEeCCCCcHHHH
Confidence 45554432 355543 356677765 68999999999987642211 1111 258899999873 33444
Q ss_pred HHHHHHhhh-hcCeeEEEEccCCCCCC
Q 008282 312 AALVTTFNI-EIGITGAILTKLDGDSR 337 (571)
Q Consensus 312 ~~~~~~f~~-~~~i~GVIlNKlD~~~~ 337 (571)
...+..+.. ...+.|+|+|++|....
T Consensus 243 ~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 243 ETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 444444432 46789999999986543
No 25
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.59 E-value=1.2e-14 Score=145.73 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=100.0
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhh---------------hccCCceecCCC
Q 008282 183 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG---------------EQVGVPVYTAGT 246 (571)
Q Consensus 183 ~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~---------------~~~gv~v~~~~~ 246 (571)
+++|+|+ +++|+||||++++||.+|+++|++|++||+|++.+.....+.... ...|+.+++.+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 4577776 679999999999999999999999999999999875433221100 011233332211
Q ss_pred CC----------C--HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc--hHHHH
Q 008282 247 EV----------K--PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT--GQEAA 312 (571)
Q Consensus 247 ~~----------~--p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~--gq~a~ 312 (571)
.. . ..+.+++.++.+.++.||||||||||.+.... .. .......|.+++|+.+.. -..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~--~~----~~~~~~aD~viiv~~~~~~s~~~~~ 171 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP--LT----VMQDAKPTGVVVVSTPQELTAVIVE 171 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH--HH----HHHHHCCSEEEEEECSSSCCHHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH--HH----HHhhccCCeEEEEecCccchHHHHH
Confidence 00 0 12234444444333689999999999875311 11 111123588888887632 23333
Q ss_pred HHHHHhhh-hcCeeEEEEccCCCCC----------ChhHHHHHHHHhCCCeE
Q 008282 313 ALVTTFNI-EIGITGAILTKLDGDS----------RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 313 ~~~~~f~~-~~~i~GVIlNKlD~~~----------~~g~~lsi~~~~g~PI~ 353 (571)
..+..+.. .+.+.|+|+|++|... ....+..+.+.++.|+.
T Consensus 172 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 172 KAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFF 223 (262)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEE
T ss_pred HHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeE
Confidence 33333322 4667899999997411 12335667788888863
No 26
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.59 E-value=2.3e-14 Score=145.31 Aligned_cols=147 Identities=22% Similarity=0.311 Sum_probs=97.2
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------hh------------hccCC
Q 008282 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LG------------EQVGV 239 (571)
Q Consensus 182 ~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------~~------------~~~gv 239 (571)
++++|+|++. +|+||||++++||..|++.|+||++||+|.++|.....+.. +. ...++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 4678999865 99999999999999999999999999999988754332210 00 01345
Q ss_pred ceecCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-ch-HHH
Q 008282 240 PVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-TG-QEA 311 (571)
Q Consensus 240 ~v~~~~~-~~~p~~v-----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-~g-q~a 311 (571)
.+++.+. ..+|.++ +.+.++.++ +.||+|||||||.+...... .+... .|.+++|+.+. +. ..+
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~~~--aD~vilVv~~~~~~~~~~ 232 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQ-----LFSKF--TGNVVYVVNSENNNKDEV 232 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHH-----HHHHH--HCEEEEEEETTSCCHHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHH-----HHHHH--CCEEEEEEeCCCCcHHHH
Confidence 5665543 2445543 356677765 68999999999987542211 11111 37889999873 22 344
Q ss_pred HHHHHHhhh-hcCeeEEEEccCCCCC
Q 008282 312 AALVTTFNI-EIGITGAILTKLDGDS 336 (571)
Q Consensus 312 ~~~~~~f~~-~~~i~GVIlNKlD~~~ 336 (571)
......+.. ...+.|+|+|++|...
T Consensus 233 ~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 233 KKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 343444432 4567899999999654
No 27
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.58 E-value=7.7e-14 Score=139.46 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHH------------HHHHh-----------hhccCCc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAID------------QLVIL-----------GEQVGVP 240 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~d------------qL~~~-----------~~~~gv~ 240 (571)
++|+|+|+|||||||++++||.+|+++|++|++||+|++.+.... .+... ....|+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 477888999999999999999999999999999999988654321 11110 0113455
Q ss_pred eecCCCCCC-----HHHHH--HHHHHHHH--hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--H
Q 008282 241 VYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 309 (571)
Q Consensus 241 v~~~~~~~~-----p~~v~--~~~l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q 309 (571)
+++.+.... ..+.. ...++.+. .++||||||||||....+. +...+ .....|.+++|+.+... .
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPI----REGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHH----HTTSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhh----hHhhCCEEEEeecCchhhHH
Confidence 555432211 11111 11222221 2579999999999764321 11111 11135888888887422 2
Q ss_pred HH---HHHHHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 310 EA---AALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 310 ~a---~~~~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
.+ .+.+..+.. .+.+.|+|+|+++..........+.+.++.|+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCccc
Confidence 22 233333322 345679999999865444555667778898873
No 28
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.57 E-value=1.4e-14 Score=148.26 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=100.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-----------HHHHHH--------------hhh
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVI--------------LGE 235 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-----------~dqL~~--------------~~~ 235 (571)
.++++|+|+|++||||||++++||.+|+++|++|++||+|++.... .+-+.. ...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 3568899999999999999999999999999999999999875322 111110 001
Q ss_pred ccCCceecCCCCC-----C-H-HHHHHHHHHHH-HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 236 QVGVPVYTAGTEV-----K-P-SQIAKQGLEEA-KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 236 ~~gv~v~~~~~~~-----~-p-~~v~~~~l~~~-~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
..|+.+++.+... . . .......++.. ..++||+|||||||....... .. .....|.+++|+.+..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-----~~--~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-----AA--PLQHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-----GG--GGGTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-----HH--HHHHCCEEEEEecCcH
Confidence 2355555433211 1 1 11112333331 236899999999998652110 00 1123588888888743
Q ss_pred h--HHHHHHHHHh-----hhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 308 G--QEAAALVTTF-----NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 308 g--q~a~~~~~~f-----~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
. ..+...+..+ +..+.+.|+|+|+++.. ..+..+.+.++.|+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCce
Confidence 2 3333333332 23455679999999854 345667778898884
No 29
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.57 E-value=1.6e-14 Score=141.43 Aligned_cols=161 Identities=22% Similarity=0.318 Sum_probs=99.9
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-------------HHHHHHhh---h------ccCCc
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILG---E------QVGVP 240 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-------------~dqL~~~~---~------~~gv~ 240 (571)
++|+|+ +++|+||||++++||.+|+++|++|++||+|++.+.. .+.+.... + ..++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 577776 5699999999999999999999999999999865332 11111000 0 02333
Q ss_pred eecCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHH
Q 008282 241 VYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA 313 (571)
Q Consensus 241 v~~~~~~~~p-----~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~ 313 (571)
+++.....+. .+.+.+.++.+. ..||+|||||||....+ . ..+. ...|.+++|+.+... ..+..
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~----~~~~--~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLD--A----MSAM--LSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHH--H----HHHH--TTCSEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHH--H----HHHH--HHCCeEEEEecCCcccHHHHHH
Confidence 4432111111 122345565554 68999999999987521 1 1121 234788888887432 33333
Q ss_pred HHHHhhh-hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 314 LVTTFNI-EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 314 ~~~~f~~-~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
....+.. ...+.|+|+|+++.......+..+.+.++.|+.
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCEE
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccce
Confidence 3333332 346789999999976544445566777888863
No 30
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.56 E-value=3.2e-14 Score=146.22 Aligned_cols=148 Identities=28% Similarity=0.390 Sum_probs=99.2
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------hh------------hccCC
Q 008282 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LG------------EQVGV 239 (571)
Q Consensus 182 ~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------~~------------~~~gv 239 (571)
++++|+|++. +|+||||++++||..|++.|+||++||+|+.++.....+.. +. ...++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4578988875 99999999999999999999999999999977654332210 00 11355
Q ss_pred ceecCCC-CCCHHHH-----HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc--chHHH
Q 008282 240 PVYTAGT-EVKPSQI-----AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--TGQEA 311 (571)
Q Consensus 240 ~v~~~~~-~~~p~~v-----~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~--~gq~a 311 (571)
.+++.+. ..+|.++ +.+.++.++ +.||+|||||||.+....... +.. ..|.+++|+.+. ....+
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-----l~~--~ad~vilV~~~~~~~~~~~ 254 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-----VGR--SVGTSLLVARFGLNTAKEV 254 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-----HGG--GCSEEEEEEETTTSCTTHH
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHH-----HHH--HCCEEEEEEcCCCChHHHH
Confidence 5665543 2345443 356677765 689999999999875422111 111 247889998873 22444
Q ss_pred HHHHHHhhh-hcCeeEEEEccCCCCCC
Q 008282 312 AALVTTFNI-EIGITGAILTKLDGDSR 337 (571)
Q Consensus 312 ~~~~~~f~~-~~~i~GVIlNKlD~~~~ 337 (571)
...+..+.. .+.+.|+|+|++|....
T Consensus 255 ~~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 255 SLSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp HHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 444444432 46689999999996643
No 31
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.56 E-value=1.1e-14 Score=143.03 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=102.7
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhH-------------HHHHHHh-------------
Q 008282 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAA-------------IDQLVIL------------- 233 (571)
Q Consensus 182 ~~~VI~iv-G~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a-------------~dqL~~~------------- 233 (571)
.+++|+|+ +++|+||||++++||.+|+++ |++|++||+|++.+.. .+.+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 35678777 669999999999999999998 9999999999873321 1111110
Q ss_pred hhccCCceecCCCCCCH-----HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 234 GEQVGVPVYTAGTEVKP-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 234 ~~~~gv~v~~~~~~~~p-----~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
....++.+++....... .+.+.+.++.+. +.||+|||||||....... .+ ....|.+++|+.+...
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~------~~--l~~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVGV------WV--LEHLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTHH------HH--GGGCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHHH------HH--HHHCCEEEEEecCcHH
Confidence 11235556654332111 234566677665 5899999999998753211 11 1235788888887422
Q ss_pred --HHHHHHHHH---hhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 309 --QEAAALVTT---FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 309 --q~a~~~~~~---f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
..+...... ++......++|+|+++...... ...+.+.++.|+.
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v~ 202 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPIS 202 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCeE
Confidence 233333333 3323456899999999664432 2456778898883
No 32
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.55 E-value=7.8e-14 Score=138.23 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=100.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH--------------------H-h---hhccC
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV--------------------I-L---GEQVG 238 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~--------------------~-~---~~~~g 238 (571)
++|+|+ +++|+||||++++||.+|+++|++|++||+|++.+.....+. . . ....+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 578887 569999999999999999999999999999985443221110 0 0 01124
Q ss_pred CceecCCCCC----CHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHH
Q 008282 239 VPVYTAGTEV----KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 312 (571)
Q Consensus 239 v~v~~~~~~~----~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~ 312 (571)
+.+++.+... -..+.+.+.++.+....||+||||||+.+.. .... +. ...|.+++|+++... ..+.
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~--~~~~----~l--~~ad~vi~v~~~~~~s~~~~~ 154 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET--GALM----AL--YFADEAIITTNPEVSSVRDSD 154 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH--HHHH----HH--HTCSEEEEEECSSHHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH--HHHH----HH--HhCCEEEEEecCChhHHHHHH
Confidence 4555433221 1223456777777633899999999998752 1111 11 135888999887432 3333
Q ss_pred HHHHHhhhh---------cCeeEEEEccCCCCCC----hhHHHHHHHHhCCCeE
Q 008282 313 ALVTTFNIE---------IGITGAILTKLDGDSR----GGAALSVKEVSGKPIK 353 (571)
Q Consensus 313 ~~~~~f~~~---------~~i~GVIlNKlD~~~~----~g~~lsi~~~~g~PI~ 353 (571)
.....+... ....++|+|+++.... .-.+..+.+.++.|+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEE
T ss_pred HHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceE
Confidence 333333221 1367999999985421 1113567778888874
No 33
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.55 E-value=2.7e-14 Score=145.23 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=96.7
Q ss_pred EEEEEE---cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhh-----------------------cc
Q 008282 184 TVILLA---GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGE-----------------------QV 237 (571)
Q Consensus 184 ~VI~iv---G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~-----------------------~~ 237 (571)
++|+|+ ++||+||||++++||..|+++|++|++||+|++.+....-...++. ..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 114 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTD 114 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSS
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCC
Confidence 355555 4899999999999999999999999999999987643211000010 02
Q ss_pred CCceecCCCCCC-------------HHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEe
Q 008282 238 GVPVYTAGTEVK-------------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVD 304 (571)
Q Consensus 238 gv~v~~~~~~~~-------------p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvd 304 (571)
|+.+++.+.... ....+++.++.+. +.||+|||||||.+.. ..... +. ..|.+++|+.
T Consensus 115 ~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~~~~~---l~---~aD~viiv~~ 185 (298)
T 2oze_A 115 NLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSV--YTNNA---IV---ASDYVMIPLQ 185 (298)
T ss_dssp SEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSH--HHHHH---HH---HCSEEEEEEC
T ss_pred CeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccH--HHHHH---HH---HCCeEEEEec
Confidence 334444332111 0122445555554 6899999999998753 11111 21 2488888887
Q ss_pred Ccc--hHHH---HHHHH----HhhhhcCeeEEEEccCCCCCC--hhHHHHHHHHhCC
Q 008282 305 AMT--GQEA---AALVT----TFNIEIGITGAILTKLDGDSR--GGAALSVKEVSGK 350 (571)
Q Consensus 305 a~~--gq~a---~~~~~----~f~~~~~i~GVIlNKlD~~~~--~g~~lsi~~~~g~ 350 (571)
+.. -..+ .+.+. .++..+.+.|+|+|++|.... ...+..+.+.++.
T Consensus 186 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 186 AEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 632 1222 22222 234467778999999997653 2344556666664
No 34
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.54 E-value=4.2e-14 Score=146.48 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=98.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-----------HHHHHHh--------------hhc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-----------IDQLVIL--------------GEQ 236 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-----------~dqL~~~--------------~~~ 236 (571)
+.+||+|+|+||||||||++|||.+|++.|+||++||+|++-... .+..... ...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 126 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGF 126 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeecC
Confidence 568999999999999999999999999999999999999864321 1111100 001
Q ss_pred cCCceecCCCCC-----CHHHHHHHHHHHH----HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 237 VGVPVYTAGTEV-----KPSQIAKQGLEEA----KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 237 ~gv~v~~~~~~~-----~p~~v~~~~l~~~----~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
.++.+...+... .... ....+..+ .++.||++++|+|+......- . ......+.+++|+.+..
T Consensus 127 ~~i~~v~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~-~------~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 127 NGVMCVEAGGPPAGTGCGGYV-VGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-A------APLQHADQAVVVTANDF 198 (314)
T ss_dssp GGCEEEECCCCCTTCSCTTHH-HHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-G------GGGGTCSEEEEEECSSH
T ss_pred CCeEEEeCCCCcccchhhhcc-HHHHHHHHHhcchhhcCceEeeccCCcchhhhh-H------hHHhhCCeEEEEeCCcH
Confidence 233444333211 1111 11122221 246799999999987642110 0 11223588888887732
Q ss_pred --hH---HHHHHHHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 308 --GQ---EAAALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 308 --gq---~a~~~~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
-+ .+...+..+.. ...+.|+|+|+.+.. ..+..+++.++.++.
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~---~~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch---hHHHHHHHHhCCeEE
Confidence 12 33334444544 345678999987654 345667788898884
No 35
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.54 E-value=1.1e-13 Score=140.46 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=97.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHH------------HHHh-------------hhccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ------------LVIL-------------GEQVG 238 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dq------------L~~~-------------~~~~g 238 (571)
++|+|+|+|||||||++++||.+|+++|++|++||+|++.+..... +... ....|
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 5788899999999999999999999999999999999986543211 1100 00123
Q ss_pred CceecCCCCCC-----HHHHH--HHHHHHHH--hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-
Q 008282 239 VPVYTAGTEVK-----PSQIA--KQGLEEAK--KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG- 308 (571)
Q Consensus 239 v~v~~~~~~~~-----p~~v~--~~~l~~~~--~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g- 308 (571)
+.+++.+.... ..+.. ...++.+. .++||||||||||.+..+. +...+ .....|.+++|+.+...
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~~~----~~~~aD~viiv~~~~~~s 157 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAMPI----RENKAQEIYIVCSGEMMA 157 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTHHH----HTTCCCEEEEEECSSHHH
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhhhh----hhhhCCEEEEEecCCHHH
Confidence 44444332110 01111 12223321 2579999999999764321 11111 11235788888877422
Q ss_pred -HHH---HHHHHHhhh--hcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE
Q 008282 309 -QEA---AALVTTFNI--EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK 353 (571)
Q Consensus 309 -q~a---~~~~~~f~~--~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~ 353 (571)
..+ .+.+..+.. .+.+.|+|+|+++.......+..+.+.++.|+.
T Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 158 MYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCcccc
Confidence 222 233333322 345679999999754433445556677888873
No 36
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.53 E-value=1.2e-13 Score=138.30 Aligned_cols=169 Identities=17% Similarity=0.233 Sum_probs=96.6
Q ss_pred CCCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhh----------------h--------
Q 008282 181 SRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG----------------E-------- 235 (571)
Q Consensus 181 ~~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~----------------~-------- 235 (571)
.++++|+|+ +++|+||||++++||.+|+ +|++|++||+|++.+....-..... .
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 456788887 6699999999999999999 9999999999998754321111000 0
Q ss_pred ---ccCCceecCCCCC---------CHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEE
Q 008282 236 ---QVGVPVYTAGTEV---------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 303 (571)
Q Consensus 236 ---~~gv~v~~~~~~~---------~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVv 303 (571)
..|+.+++.+... .....+...++.+. ..||+||||||+.... .... . ....|.+++|+
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~--~~~~----~--l~~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDV--TLKN----A--LLCSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSH--HHHH----H--HTTCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccH--HHHH----H--HHHCCeEEEEe
Confidence 0233344332110 01334556666654 6899999999998742 1111 1 12257888888
Q ss_pred eCcc-h-HHHHHHH---HHhhhhcCeeEEEEccCCCCCChhHHHHHHHHhCCCeE-EEecCCCC
Q 008282 304 DAMT-G-QEAAALV---TTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIK-LVGRGERM 361 (571)
Q Consensus 304 da~~-g-q~a~~~~---~~f~~~~~i~GVIlNKlD~~~~~g~~lsi~~~~g~PI~-fig~Ge~v 361 (571)
.+.. . ..+.... ..+.....+ ++|+|+++.......+...... +.|+. +++..+.+
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~~~~~l~~-~~~~~~~Ip~~~~~ 236 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKTLFEILKT-KDRFLGTISEREDL 236 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCHHHHHHTT-STTEEEEEEC----
T ss_pred CCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHHHHHHHhc-CcccceecCcHHHH
Confidence 7732 2 2222222 223223333 6999999654444344333332 55653 34443333
No 37
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.52 E-value=8.8e-14 Score=136.35 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=98.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHH--------------------HHhh-----------
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQL--------------------VILG----------- 234 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL--------------------~~~~----------- 234 (571)
|+|+|++|+||||++++||.+|+++|+||++||+|++ +.....+ ....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 5669999999999999999999999999999999996 3321111 0000
Q ss_pred ----------hccCCce-ecCCC------CC-CHH-HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhC
Q 008282 235 ----------EQVGVPV-YTAGT------EV-KPS-QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLN 295 (571)
Q Consensus 235 ----------~~~gv~v-~~~~~------~~-~p~-~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~ 295 (571)
...++.+ +..+. .. .+. ..+++.++.+....||+|||||||.+..... .+ ...
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~------~~--l~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTR------GT--AKA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCH------HH--HTT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHH------HH--HHH
Confidence 0012222 22111 11 122 4577888887347999999999998753211 11 123
Q ss_pred CceEEEEEeCcch-HHHHHHHHHhhhhcC--eeEEEEccCCCCCChhHHHHHHHHhC-CCeE-EEecCCCC
Q 008282 296 PTEVLLVVDAMTG-QEAAALVTTFNIEIG--ITGAILTKLDGDSRGGAALSVKEVSG-KPIK-LVGRGERM 361 (571)
Q Consensus 296 pd~vlLVvda~~g-q~a~~~~~~f~~~~~--i~GVIlNKlD~~~~~g~~lsi~~~~g-~PI~-fig~Ge~v 361 (571)
.|.+++|+++... ......+..+....+ ..++|+|+++.. .....+.+.++ .++. ++...+.+
T Consensus 154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~---~~~~~~~~~~~~~~~~~~Ip~~~~~ 221 (254)
T 3kjh_A 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI---KEEKLIKKHLPEDKILGIIPYNELF 221 (254)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH---HHHHHHHHHSCGGGEEEEEECCHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh---hHHHHHHHHhcCCcccccccCcHHH
Confidence 4888888887422 222233333433343 468999999843 23445666676 4543 44444333
No 38
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.48 E-value=1.6e-13 Score=136.96 Aligned_cols=162 Identities=25% Similarity=0.323 Sum_probs=95.3
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHH---------hhh---------ccCCcee
Q 008282 182 RPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVI---------LGE---------QVGVPVY 242 (571)
Q Consensus 182 ~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~---------~~~---------~~gv~v~ 242 (571)
++++|+|+ +++|+||||++++||.+|+++|++|++||+|++.... ..+.. +.. ..++.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 35678887 6799999999999999999999999999999975432 11100 000 1244455
Q ss_pred cCCCCCCHH--HHHH--HHHHHHHh-CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HH---HH
Q 008282 243 TAGTEVKPS--QIAK--QGLEEAKK-KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QE---AA 312 (571)
Q Consensus 243 ~~~~~~~p~--~v~~--~~l~~~~~-~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~---a~ 312 (571)
+.+...... ++.. ..+..+.. ..||+|||||||.+.. .... .+ . ..|.+++|+.+... .. ..
T Consensus 84 p~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~--~~~~---~l-~--~aD~viiv~~~~~~s~~~~~~~~ 155 (257)
T 1wcv_1 84 PATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSP--LTLN---AL-A--AAEGVVVPVQAEYYALEGVAGLL 155 (257)
T ss_dssp CCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCH--HHHH---HH-H--HCSEEEEEEESSTHHHHHHHHHH
T ss_pred eCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCH--HHHH---HH-H--HCCeEEEEecCchHHHHHHHHHH
Confidence 443221111 0100 12222211 6799999999998752 1111 11 1 24888999887432 22 22
Q ss_pred HHHHH----hhhhcCeeEEEEccCCCCCCh--hHHHHHHHHhCCCe
Q 008282 313 ALVTT----FNIEIGITGAILTKLDGDSRG--GAALSVKEVSGKPI 352 (571)
Q Consensus 313 ~~~~~----f~~~~~i~GVIlNKlD~~~~~--g~~lsi~~~~g~PI 352 (571)
+.+.. ++..+.+.|+|+|+++..... .....+.+.++.|+
T Consensus 156 ~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 156 ATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 23332 233566679999999976432 22334555667665
No 39
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.47 E-value=1.1e-12 Score=127.39 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=94.8
Q ss_pred EEEEEEc-CCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc---------hhHHHHHHHhhhcc------CCceecCCCC
Q 008282 184 TVILLAG-LQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---------PAAIDQLVILGEQV------GVPVYTAGTE 247 (571)
Q Consensus 184 ~VI~ivG-~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R---------p~a~dqL~~~~~~~------gv~v~~~~~~ 247 (571)
++|+|++ ++|+||||++.+||.+|+++|+||+++|..... ....+.+..+.... ....+.....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTS 81 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESSCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCCCCC
Confidence 4677775 599999999999999999999999997632111 11112222111100 0011111100
Q ss_pred C----------CHHHHHHHHHHHHHhCCCcEEEEeCCCCCccc--HHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHH
Q 008282 248 V----------KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQID--KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA 313 (571)
Q Consensus 248 ~----------~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d--~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~ 313 (571)
. ...+.+.+.++.+. ++||+|||||||.+... ..+ ....+..... +++++|+++... .++..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~--~~~~l~~~~~-~~vi~v~~~~~~~~~~~~~ 157 (224)
T 1byi_A 82 PHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTF--TFADWVTQEQ-LPVILVVGVKLGCINHAML 157 (224)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTE--EHHHHHHHHT-CCEEEEEECSTTHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcch--hHHHHHHHhC-CCEEEEecCCCCcHHHHHH
Confidence 0 11234556677765 68999999999887521 000 0111222222 468888877432 33444
Q ss_pred HHHHh-hhhcCeeEEEEccCCCCCC--hhHHHHHHHHhCCCeE
Q 008282 314 LVTTF-NIEIGITGAILTKLDGDSR--GGAALSVKEVSGKPIK 353 (571)
Q Consensus 314 ~~~~f-~~~~~i~GVIlNKlD~~~~--~g~~lsi~~~~g~PI~ 353 (571)
.++.+ +..+.+.|+|+|++|.... ......+.+.++.|+.
T Consensus 158 ~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 158 TAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp HHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEE
Confidence 44333 3467889999999996532 3334456666888873
No 40
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.44 E-value=1.8e-12 Score=125.99 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=89.4
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 185 VILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 185 VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
+|+|+ ++||+||||++.+||.+|+++| +|++||+|++.... ..+.. .....+++.. . .++.+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~--~~l~~~vi~~-------~----~l~~l~- 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR--GSLPFKVVDE-------R----QAAKYA- 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH--SCCSSEEEEG-------G----GHHHHG-
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC--CCCCcceeCH-------H----HHHHhh-
Confidence 45564 7799999999999999999999 99999999987543 22221 1111122221 1 344443
Q ss_pred CCCcEEEEeCCCC-CcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhh--hcCeeEEEEccCCCCC-C
Q 008282 264 KNVDVVIVDTAGR-LQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNI--EIGITGAILTKLDGDS-R 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~-l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~--~~~i~GVIlNKlD~~~-~ 337 (571)
..||+|||||||. .... .. .+. ...|.+++|+.+... ..+......+.. ... .++|+|+++... .
T Consensus 66 ~~yD~viiD~p~~~~~~~--~~----~~l--~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~ 136 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDED--LE----ALA--DGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSK 136 (209)
T ss_dssp GGCSEEEEEEECCCSSSH--HH----HHH--HTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSC
T ss_pred hcCCEEEEeCCCCcCcHH--HH----HHH--HHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccch
Confidence 6899999999998 5421 11 111 134788888887432 233333333332 233 689999999765 3
Q ss_pred -hhHHHHHHHHhCCCe
Q 008282 338 -GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 -~g~~lsi~~~~g~PI 352 (571)
...+......++.|+
T Consensus 137 ~~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 137 DGDEARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHcCCch
Confidence 334444555577776
No 41
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.43 E-value=1.8e-12 Score=136.03 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=38.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a 226 (571)
..++++++|++|+||||++++||..|+++|+||++||+|+ ++..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l 68 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSL 68 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCH
Confidence 3466777799999999999999999999999999999999 4443
No 42
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=1.1e-12 Score=137.85 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=88.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH---H----HHHHhhhccCCceecCCCCCCH---H
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI---D----QLVILGEQVGVPVYTAGTEVKP---S 251 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~---d----qL~~~~~~~gv~v~~~~~~~~p---~ 251 (571)
++.+|+++|++||||||++.+|+..++..|++|+++++|+..+... . ....+....++.+......... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4678999999999999999999999999999999999998765421 1 1112222334544443332221 2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEcc
Q 008282 252 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTK 331 (571)
Q Consensus 252 ~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNK 331 (571)
...++.+..+...++|++||||||....... +. -.+|.+++|+|+..+.+......... .. ...+|+||
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~-------~~--~~aD~vl~V~d~~~~~~~~~l~~~~~-~~-p~ivVlNK 226 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEVA-------VA--NMVDTFVLLTLARTGDQLQGIKKGVL-EL-ADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHHH-------HH--TTCSEEEEEEESSTTCTTTTCCTTSG-GG-CSEEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHHH-------HH--HhCCEEEEEECCCCCccHHHHHHhHh-hc-CCEEEEEC
Confidence 2334556666668899999999996542211 11 23588899999865532211111111 12 24689999
Q ss_pred CCCCCC
Q 008282 332 LDGDSR 337 (571)
Q Consensus 332 lD~~~~ 337 (571)
+|....
T Consensus 227 ~Dl~~~ 232 (355)
T 3p32_A 227 ADGEHH 232 (355)
T ss_dssp CCGGGH
T ss_pred CCCcCh
Confidence 997543
No 43
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.41 E-value=2.2e-12 Score=131.00 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=73.0
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhh------h---ccCC-ceecCCC--CCC
Q 008282 183 PTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILG------E---QVGV-PVYTAGT--EVK 249 (571)
Q Consensus 183 ~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~------~---~~gv-~v~~~~~--~~~ 249 (571)
+++|+|+ +++|+||||++.+||.+|+++|++|++||+|+..+.....+.... . ..++ ++++... ...
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 83 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAE 83 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcC
Confidence 3578787 669999999999999999999999999999995544333222111 0 1123 3333210 001
Q ss_pred H-----HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 250 P-----SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 250 p-----~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
+ .+.+...++.+. ..||+|||||||.+.. ... .+ ....|.+++|+.+.
T Consensus 84 ~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~--~~~----~~--l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 84 RPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSA--ITR----MA--HGRADLVVTPMNDS 136 (286)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCH--HHH----HH--HHTCSEEEEEEESS
T ss_pred hhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccH--HHH----HH--HHHCCEEEEEEcCC
Confidence 0 124456666665 6899999999998742 111 11 12347888888763
No 44
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.40 E-value=1.6e-12 Score=136.89 Aligned_cols=43 Identities=37% Similarity=0.458 Sum_probs=38.2
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH
Q 008282 184 TVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 184 ~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a 226 (571)
++|+|+ ++|||||||++++||..|++.|+||++||+|++.+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 467776 7799999999999999999999999999999987543
No 45
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.38 E-value=1.4e-11 Score=128.03 Aligned_cols=40 Identities=38% Similarity=0.443 Sum_probs=37.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.++++++|++||||||++++||..|+++|+||++||+|+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4577778999999999999999999999999999999986
No 46
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.38 E-value=3.7e-12 Score=132.02 Aligned_cols=42 Identities=33% Similarity=0.585 Sum_probs=37.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
.+++++.|++|+||||++++||.+++++|+||++||+|+ ++.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~ 55 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHS 55 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcC
Confidence 467777799999999999999999999999999999998 443
No 47
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.35 E-value=3.8e-12 Score=135.27 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=95.0
Q ss_pred CCCCEEEEEE-cCCCCcHHHHHHHHHHHHH------hcCCeEEEEeccCCchhHHHHH-----------------HH---
Q 008282 180 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAAIDQL-----------------VI--- 232 (571)
Q Consensus 180 ~~~~~VI~iv-G~~GvGKTTtaakLA~~La------~~G~kVlLVd~D~~Rp~a~dqL-----------------~~--- 232 (571)
..++++|+|+ ++||+||||++++||.+|+ ++|++|++||+|++.... ..+ ..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~-~~l~~~~~~~~~~~~~~~~l~~~~~ 183 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSAT-MFLSHKHSIGIVNATSAQAMLQNVS 183 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHH-HHHSCHHHHSSCCSCHHHHHHHCCC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChh-HHhCCccccccccccHHHHHHhhcc
Confidence 3457888887 7799999999999999999 479999999999865321 111 00
Q ss_pred -------h---hhccCCceecCCCCCC-----HH--------------HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHH
Q 008282 233 -------L---GEQVGVPVYTAGTEVK-----PS--------------QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAM 283 (571)
Q Consensus 233 -------~---~~~~gv~v~~~~~~~~-----p~--------------~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l 283 (571)
. ....|+.+++.+.... .. ..++..++.+. ++||||||||||.+.. ..
T Consensus 184 ~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~--~~ 260 (398)
T 3ez2_A 184 REELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDA--FL 260 (398)
T ss_dssp HHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSH--HH
T ss_pred ccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccH--HH
Confidence 0 0113455555443210 00 12234555554 7899999999998742 11
Q ss_pred HHHHHHHHhhhCCceEEEEEeCcch---------HH---HHHHHHHhhhhcCeeEEEE--ccCCCCC-ChhHHHHHHHHh
Q 008282 284 MDELKDVKRVLNPTEVLLVVDAMTG---------QE---AAALVTTFNIEIGITGAIL--TKLDGDS-RGGAALSVKEVS 348 (571)
Q Consensus 284 ~~eL~~i~~~~~pd~vlLVvda~~g---------q~---a~~~~~~f~~~~~i~GVIl--NKlD~~~-~~g~~lsi~~~~ 348 (571)
...+ . ..|.+++|+.+... .. ..+.+..++....+.|+|. |+.+... .......+.+.+
T Consensus 261 ~~~l---~---~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~~~~~~~~~l~~~~ 334 (398)
T 3ez2_A 261 KNAL---A---SANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVF 334 (398)
T ss_dssp HHHH---H---HCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHH---H---HCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCchhHHHHHHHHHHHh
Confidence 1111 1 24788888876321 11 1222233344566666644 4444322 122344566678
Q ss_pred CCCeE
Q 008282 349 GKPIK 353 (571)
Q Consensus 349 g~PI~ 353 (571)
|.++.
T Consensus 335 g~~vl 339 (398)
T 3ez2_A 335 GGDML 339 (398)
T ss_dssp GGGBC
T ss_pred ccccc
Confidence 87663
No 48
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.33 E-value=7.6e-12 Score=130.60 Aligned_cols=42 Identities=38% Similarity=0.438 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
..++++++|++|+||||++++||.+|++.|++|++||+|+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 356888889999999999999999999999999999999643
No 49
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.33 E-value=1.1e-11 Score=129.36 Aligned_cols=233 Identities=18% Similarity=0.205 Sum_probs=117.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhc---------cCCceecCCCCC---
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQ---------VGVPVYTAGTEV--- 248 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~---------~gv~v~~~~~~~--- 248 (571)
.++.+|+++|++|+||||++.+|+..+...|.+|.+++.|++++.....+ ++.. .+..+.+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i--l~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI--LGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC-----
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce--ecccchHHhhccCCCceeecCccccccc
Confidence 35678999999999999999999999999999999999999876421111 1110 111111111100
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEE
Q 008282 249 KPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAI 328 (571)
Q Consensus 249 ~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVI 328 (571)
....-..+.+..+.+.+++++||||||....... + ....|.+++|+|+..+... ..........+ ..+|
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~-------~--~~~aD~vl~Vvd~~~~~~~-~~l~~~~~~~p-~ivv 200 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSETE-------V--ARMVDCFISLQIAGGGDDL-QGIKKGLMEVA-DLIV 200 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH-------H--HTTCSEEEEEECC-------CCCCHHHHHHC-SEEE
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH-------H--HHhCCEEEEEEeCCccHHH-HHHHHhhhccc-CEEE
Confidence 1111122333344467999999999997643211 1 1245889999998655321 10110000122 3589
Q ss_pred EccCCCCCChhHH---HHHHH---HhC-------CCeEEEe--cCCCCCCCccCCchhHhhhccCchhHH-HHHHHHHHH
Q 008282 329 LTKLDGDSRGGAA---LSVKE---VSG-------KPIKLVG--RGERMEDLEPFYPDRMAGRILGMGDVL-SFVEKAQEV 392 (571)
Q Consensus 329 lNKlD~~~~~g~~---lsi~~---~~g-------~PI~fig--~Ge~v~dl~~f~p~~~~~r~lG~gdv~-~l~e~a~e~ 392 (571)
+||+|........ ..+.. .++ .|+.+++ .|+.++++...-.+.+....-+ +.+. ...+.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~-~~~~~~r~~~~~~~ 279 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS-GRLQQVRQQQSVEW 279 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHH
Confidence 9999975431111 11221 122 3444454 4555554321101101000001 1111 111122222
Q ss_pred hchhHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCch
Q 008282 393 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSM 428 (571)
Q Consensus 393 l~e~~~~~~~~k~~~g~~~ledl~~ql~~~~k~G~~ 428 (571)
+.+.-.+.+++++.++ ++.++++..+++....|.+
T Consensus 280 ~~e~i~e~l~~~~~~~-~~~~~~~~~l~~~v~~~~~ 314 (341)
T 2p67_A 280 LRKQTEEEVLNHLFAN-EDFDRYYRQTLLAVKNNTL 314 (341)
T ss_dssp HHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhC-cchhHHHHHHHHHHHhCCC
Confidence 2233344566777764 8888888888888777754
No 50
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.33 E-value=6.3e-12 Score=132.16 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=36.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH--hcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La--~~G~kVlLVd~D~~ 222 (571)
..|++++|++||||||++++||..|+ +.|+||++||+|+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 45677779999999999999999999 89999999999984
No 51
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.31 E-value=4.4e-12 Score=135.06 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred CCCCEEEEEE-cCCCCcHHHHHHHHHHHHH------hcCCeEEEEeccCCchhH----------------HHHHHH----
Q 008282 180 KSRPTVILLA-GLQGVGKTTVSAKLANYLK------KQGKSCMLVAGDVYRPAA----------------IDQLVI---- 232 (571)
Q Consensus 180 ~~~~~VI~iv-G~~GvGKTTtaakLA~~La------~~G~kVlLVd~D~~Rp~a----------------~dqL~~---- 232 (571)
..++++|+|+ |+||+||||++++||.+|+ ++|++|++||+|++.... .+.+..
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 187 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNNLDA 187 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----------CCHHHHHHHTCCH
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCcccCcccccHHHHHHhcccc
Confidence 3467888887 7799999999999999999 679999999999865211 011100
Q ss_pred ---h------hhccCCceecCCCCCC-----HHH--------------HHHHHHHHHHhCCCcEEEEeCCCCCcccHHHH
Q 008282 233 ---L------GEQVGVPVYTAGTEVK-----PSQ--------------IAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM 284 (571)
Q Consensus 233 ---~------~~~~gv~v~~~~~~~~-----p~~--------------v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~ 284 (571)
+ ....|+.+++.+.... ..+ +.+..++.+. ++||||||||||.+.. ...
T Consensus 188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~--~~~ 264 (403)
T 3ez9_A 188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDP--FLL 264 (403)
T ss_dssp HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSH--HHH
T ss_pred cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccH--HHH
Confidence 0 0113455555433210 000 1123333333 6899999999998752 222
Q ss_pred HHHHHHHhhhCCceEEEEEeCcch---------H---HHHHHHHHhhhhcCeeEE--EEccCCCCCCh-hHHHHHHHHhC
Q 008282 285 DELKDVKRVLNPTEVLLVVDAMTG---------Q---EAAALVTTFNIEIGITGA--ILTKLDGDSRG-GAALSVKEVSG 349 (571)
Q Consensus 285 ~eL~~i~~~~~pd~vlLVvda~~g---------q---~a~~~~~~f~~~~~i~GV--IlNKlD~~~~~-g~~lsi~~~~g 349 (571)
..+ ...|.+++|+.+... . ...+.++.+.....+.|+ ++|+.+..... .....+.+.+|
T Consensus 265 ~al------~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 265 NGL------AASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKRDHETSHSLAREVYA 338 (403)
T ss_dssp HHH------HHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHH------HHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCchhHHHHHHHHHHHhh
Confidence 111 124888888876321 1 122223333435566664 67787743222 22344556789
Q ss_pred CCe
Q 008282 350 KPI 352 (571)
Q Consensus 350 ~PI 352 (571)
.++
T Consensus 339 ~~v 341 (403)
T 3ez9_A 339 SNI 341 (403)
T ss_dssp TSE
T ss_pred Hhh
Confidence 887
No 52
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.25 E-value=1e-10 Score=123.50 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=85.7
Q ss_pred ccCCCCEEEEEE-cCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc-----------hhHHHHHHH-------------
Q 008282 178 FAKSRPTVILLA-GLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR-----------PAAIDQLVI------------- 232 (571)
Q Consensus 178 ~~~~~~~VI~iv-G~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R-----------p~a~dqL~~------------- 232 (571)
....++++|+|+ |+||+||||++++||..|+++|++|++||+|.+. ....+.+..
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 344567899998 5799999999999999999999999999999321 111111111
Q ss_pred -hh--hccCCceecCCCCCC-----HHHHHHHHHHHHH-hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEE
Q 008282 233 -LG--EQVGVPVYTAGTEVK-----PSQIAKQGLEEAK-KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVV 303 (571)
Q Consensus 233 -~~--~~~gv~v~~~~~~~~-----p~~v~~~~l~~~~-~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVv 303 (571)
.. ...|+.+++.+.... ..+.+...++.+. +..||+||||||+....+ .. .+. ...|.+++|+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~--~~----~~l--~~aD~vivv~ 289 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIE--KL----KLL--SKAWRIIVVN 289 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHH--HH----HHH--TTCSEEEEEE
T ss_pred HHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHH--HH----HHH--HHCCEEEEEe
Confidence 10 024555555432211 1222334444443 368999999999876521 11 111 2348888888
Q ss_pred eCcc-h----HHHHHHHHHhhhhcCeeEEEEccC
Q 008282 304 DAMT-G----QEAAALVTTFNIEIGITGAILTKL 332 (571)
Q Consensus 304 da~~-g----q~a~~~~~~f~~~~~i~GVIlNKl 332 (571)
.+.. + .++.+.++.+....+ .++|.|+.
T Consensus 290 ~~~~~s~~~l~~~~~~l~~l~~~~~-~~vv~N~~ 322 (373)
T 3fkq_A 290 DGSQLSNYKFMRAYESVVLLEQNDD-INIIRNMN 322 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSTT-CCCGGGEE
T ss_pred cCCchHHHHHHHHHHHHHHhcccCC-cEEEehhH
Confidence 7743 2 444555555544322 33444443
No 53
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.24 E-value=7.9e-12 Score=123.99 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=82.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH-------------HHHHHHhhhccCC--ceecC-C
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA-------------IDQLVILGEQVGV--PVYTA-G 245 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a-------------~dqL~~~~~~~gv--~v~~~-~ 245 (571)
++.+++++|++||||||++.+||.+++ +|++|++||+|++.... .++.. ....+. .+++. .
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM--REGYGPNGAIVESYD 89 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHH--TTTCCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHh--hccCCCCCcEEecHH
Confidence 467888899999999999999999999 99999999999874321 11110 000000 00000 0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHH-HHHHHhhhCCceEEEEEeCcch---HHHHHHH-----H
Q 008282 246 TEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDE-LKDVKRVLNPTEVLLVVDAMTG---QEAAALV-----T 316 (571)
Q Consensus 246 ~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~e-L~~i~~~~~pd~vlLVvda~~g---q~a~~~~-----~ 316 (571)
........+.+.++.+. .+||++||||||..... .... ...+...+..+.+++|+|+... .+..... .
T Consensus 90 ~~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~--~~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLE-KENDYVLIDTPGQMETF--LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HHHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHH--HHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchh--hhhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 00011223345555554 46999999999986321 1111 1112222222667788887533 2221111 1
Q ss_pred HhhhhcCeeEEEEccCCCCC
Q 008282 317 TFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 317 ~f~~~~~i~GVIlNKlD~~~ 336 (571)
......+ ..+|+||+|...
T Consensus 167 ~~~~~~p-~~iv~NK~D~~~ 185 (262)
T 1yrb_A 167 DLRLGAT-TIPALNKVDLLS 185 (262)
T ss_dssp HHHHTSC-EEEEECCGGGCC
T ss_pred hcccCCC-eEEEEecccccc
Confidence 1122334 348999999653
No 54
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.24 E-value=3e-11 Score=126.76 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=37.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH--hcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La--~~G~kVlLVd~D~~ 222 (571)
..++++++|++|+||||++++||.+++ +.|++|++||+|+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 357899999999999999999999999 89999999999953
No 55
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.23 E-value=3.3e-11 Score=134.53 Aligned_cols=45 Identities=36% Similarity=0.530 Sum_probs=40.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a 226 (571)
..+++++++|++|+||||++++||..++++|+||++||+|+ ++..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l 50 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNV 50 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCH
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 45678899999999999999999999999999999999998 4443
No 56
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.19 E-value=1.5e-10 Score=116.26 Aligned_cols=169 Identities=16% Similarity=0.198 Sum_probs=99.9
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEe-----ccCCchhHHHHHHHhhhccCCc----eecCCCCCC--
Q 008282 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVYRPAAIDQLVILGEQVGVP----VYTAGTEVK-- 249 (571)
Q Consensus 182 ~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd-----~D~~Rp~a~dqL~~~~~~~gv~----v~~~~~~~~-- 249 (571)
..+.++|+|. +|+|||++++.|+.+|+++|++|.+.- +...-.. ...+. ...+++ .+.......
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D-~~~~~---~~~g~~~~~~~~~~~~p~sP~ 100 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDD-LAEVG---RLAGVTQLAGLARYPQPMAPA 100 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCH-HHHHH---HHHCCCEEEEEEECSSSSCHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHH-HHHHH---HHcCCCCCCCCeeECCCCChH
Confidence 3468999998 899999999999999999999999765 2110011 11111 122322 111111111
Q ss_pred -----------HHHHHHHHHHHHHhCCCcEEEEeCCCCCcc--cH--HHHHHHHHHHhhhCCceEEEEEeCcch--HHHH
Q 008282 250 -----------PSQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DK--AMMDELKDVKRVLNPTEVLLVVDAMTG--QEAA 312 (571)
Q Consensus 250 -----------p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~--d~--~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~ 312 (571)
..+.+.+.++.+. .+||+||||++|.+.. +. .... ++.+.+. .+++||+++..+ ..+.
T Consensus 101 ~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~a---dla~~l~-~pVILV~~~~~g~i~~~~ 175 (251)
T 3fgn_A 101 AAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLR---DVAVDVA-AAALVVVTADLGTLNHTK 175 (251)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHH---HHHHHTT-CEEEEEECSSTTHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHH---HHHHHcC-CCEEEEEcCCCccHHHHH
Confidence 1223445555543 6899999999998743 11 1222 2333333 789999998544 3333
Q ss_pred HHHHHh-hhhcCeeEEEEccCCCCC--ChhHHHHHHHHhCCCeEEEecCCCCC
Q 008282 313 ALVTTF-NIEIGITGAILTKLDGDS--RGGAALSVKEVSGKPIKLVGRGERME 362 (571)
Q Consensus 313 ~~~~~f-~~~~~i~GVIlNKlD~~~--~~g~~lsi~~~~g~PI~fig~Ge~v~ 362 (571)
..+..+ ...+.+.|+|+|++.++. .........+.. +|+ +|..++.+
T Consensus 176 lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpv--LG~iP~~~ 225 (251)
T 3fgn_A 176 LTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMV--RAALPAGA 225 (251)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCE--EEEEETTG
T ss_pred HHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCE--EEEeeCCC
Confidence 333322 457889999999996432 122334445555 888 66665543
No 57
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.14 E-value=4.6e-10 Score=118.86 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=35.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
.+|++++|++|+||||++++||.+++++|++|++||+
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 3688889999999999999999999999999999999
No 58
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.14 E-value=3.3e-10 Score=111.89 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=98.8
Q ss_pred CEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEe---ccC-Cc-hh--HHHHHHHhhhccCCc-------eecCCCC
Q 008282 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA---GDV-YR-PA--AIDQLVILGEQVGVP-------VYTAGTE 247 (571)
Q Consensus 183 ~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd---~D~-~R-p~--a~dqL~~~~~~~gv~-------v~~~~~~ 247 (571)
.+.++|+|. +|+||||+++.|+..|+++|++|.+.- +-+ +. .+ ..|.+. ...+++ .+.....
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~~~~~p 80 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL---NAYKHKFTAAEINLISFNQA 80 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH---HHTTTSSCHHHHCSEEESSS
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH---HhcCCCCChhhEEEEEECCC
Confidence 357899998 999999999999999999999999764 111 11 00 012111 112221 0111111
Q ss_pred CCH------------HHHHHHHHHH-HHhCCCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEEEeCcch--H
Q 008282 248 VKP------------SQIAKQGLEE-AKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG--Q 309 (571)
Q Consensus 248 ~~p------------~~v~~~~l~~-~~~~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q 309 (571)
..| .+.+.+.++. + .++||+||||+||.+.. +.... .++.+.+. .++++|+++..+ .
T Consensus 81 ~sp~~aa~~~~~~i~~~~i~~~~~~~l-~~~~D~vlIEgaggl~~p~~~~~~~---adla~~l~-~pviLV~~~~~~~i~ 155 (228)
T 3of5_A 81 VAPHIIAAKTKVDISIENLKQFIEDKY-NQDLDILFIEGAGGLLTPYSDHTTQ---LDLIKALQ-IPVLLVSAIKVGCIN 155 (228)
T ss_dssp SCHHHHHHHTTCCCCHHHHHHHHHGGG-GSSCSEEEEEEEEETTCBSSSSCBH---HHHHHHHT-CCEEEEEECSTTHHH
T ss_pred CCHHHHHHHcCCCCCHHHHHHHHHHHH-HccCCEEEEECCCccccccccchhH---HHHHHHcC-CCEEEEEcCCcchHH
Confidence 111 1223455554 3 37899999999987642 11111 22223332 679999998544 3
Q ss_pred HHHHHHHH-hhhhcCeeEEEEccCCCCC-Ch-hHHHHHHHHhCCCeEEEecCC
Q 008282 310 EAAALVTT-FNIEIGITGAILTKLDGDS-RG-GAALSVKEVSGKPIKLVGRGE 359 (571)
Q Consensus 310 ~a~~~~~~-f~~~~~i~GVIlNKlD~~~-~~-g~~lsi~~~~g~PI~fig~Ge 359 (571)
++...+.. .+..+.+.|+|+|+++.+. .. .....+.+.++.|+ +|..+
T Consensus 156 ~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pv--LG~iP 206 (228)
T 3of5_A 156 HTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKC--SAKIS 206 (228)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCC--SEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCE--EEECC
Confidence 33333332 2456788999999998763 33 34455666789999 56554
No 59
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.98 E-value=9.2e-10 Score=122.80 Aligned_cols=41 Identities=37% Similarity=0.445 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
..++++.|++|+||||++++||..++++|++|++||+|++.
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 45677779999999999999999999999999999999863
No 60
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.97 E-value=4.8e-09 Score=104.66 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=89.5
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEe-----ccCC--chhHHHHH-HHhhhcc-CCce-----ecCCC
Q 008282 182 RPTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVA-----GDVY--RPAAIDQL-VILGEQV-GVPV-----YTAGT 246 (571)
Q Consensus 182 ~~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd-----~D~~--Rp~a~dqL-~~~~~~~-gv~v-----~~~~~ 246 (571)
..+.++|+|. +|||||++++.|+.+|+++|++|.+.. ++.. .......+ ....... +++. +....
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~ 99 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHK 99 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSS
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECC
Confidence 3578999998 999999999999999999999999875 2211 11111111 1001122 3321 11111
Q ss_pred ---------------CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 247 ---------------EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 247 ---------------~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
..+ .+.+.+.++.+. ..||+||||++|.+.. +..... ++.+.++ .+++||+++..+
T Consensus 100 p~sp~~aa~~~g~~~~i~-~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~a---dlA~~l~-~pVILV~~~~lg 173 (242)
T 3qxc_A 100 VSAPLIAQQEEDPNAPID-TDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENML---DFALKLK-AKMLLISHDNLG 173 (242)
T ss_dssp SSCHHHHHHHHCTTCCCC-HHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHH---HHHHHHT-CEEEEEECCSTT
T ss_pred CCChHHHHHHcCCCCcCC-HHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHH---HHHHHcC-CCEEEEEcCCCc
Confidence 112 233455566554 6899999999998753 111222 2333333 789999998655
Q ss_pred --HHHHHHHHHh-hhhcCeeEEEEccCCCCC
Q 008282 309 --QEAAALVTTF-NIEIGITGAILTKLDGDS 336 (571)
Q Consensus 309 --q~a~~~~~~f-~~~~~i~GVIlNKlD~~~ 336 (571)
..+...+..+ ...+. .|+|+|+++...
T Consensus 174 ~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 174 LINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp HHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 2333333333 34678 999999998765
No 61
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=3.5e-09 Score=110.92 Aligned_cols=143 Identities=19% Similarity=0.206 Sum_probs=75.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHH-------HHHhhhccCCceecCCCC----CCH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ-------LVILGEQVGVPVYTAGTE----VKP 250 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dq-------L~~~~~~~gv~v~~~~~~----~~p 250 (571)
...+|+|+|++||||||+...|+..+...+.+|.++..|++.+..... +..++....+.+...... ...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 356899999999999999999999998889999999999987542111 111111111111111000 000
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEc
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlN 330 (571)
.. ..+++..+...++|++||||||..+.... +. -..+.+++|+|+..+.+......... .. ..-+|+|
T Consensus 153 r~-~~~~~~~~~~~~~~~iliDT~Gi~~~~~~-------l~--~~~d~vl~V~d~~~~~~~~~i~~~il-~~-~~ivVlN 220 (349)
T 2www_A 153 RT-TNEAILLCEGAGYDIILIETVGVGQSEFA-------VA--DMVDMFVLLLPPAGGDELQGIKRGII-EM-ADLVAVT 220 (349)
T ss_dssp TT-HHHHHHHHHHTTCSEEEEECCCC--CHHH-------HH--TTCSEEEEEECCC------------C-CS-CSEEEEC
T ss_pred HH-HHHHHHhhccCCCCEEEEECCCcchhhhh-------HH--hhCCEEEEEEcCCcchhHHHhHHHHH-hc-CCEEEEe
Confidence 11 12233333447899999999997532211 11 13578899999876532211111111 11 2458889
Q ss_pred cCCCCC
Q 008282 331 KLDGDS 336 (571)
Q Consensus 331 KlD~~~ 336 (571)
|+|...
T Consensus 221 K~Dl~~ 226 (349)
T 2www_A 221 KSDGDL 226 (349)
T ss_dssp CCSGGG
T ss_pred eecCCC
Confidence 999753
No 62
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.81 E-value=1.5e-08 Score=97.59 Aligned_cols=134 Identities=16% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC----CCCHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT----EVKPSQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~----~~~p~~v~~~~ 257 (571)
+..+|+++|.+||||||++.+|+..+... ++|.+|+.|++.......+. ..+..+..... ... .....+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLD-AHMIYHR 102 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCC-HHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeecc-cHHHHHH
Confidence 35689999999999999999999887655 89999999987643222222 22443322221 112 2222233
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH-HHHHhhhhcCeeEEEEccCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA-LVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~-~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
+. ...++|++||||+|.+..... + ....+.+++|+|+..+..... ....+ .. ..-+|+||+|..
T Consensus 103 ~~--~~~~~d~iiidt~G~~~~~~~-------~--~~~~~~~i~vvd~~~~~~~~~~~~~~~--~~-~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 103 LK--KFSDCDLLLIENVGNLICPVD-------F--DLGENYRVVMVSVTEGDDVVEKHPEIF--RV-ADLIVINKVALA 167 (221)
T ss_dssp GG--GGTTCSEEEEEEEEBSSGGGG-------C--CCSCSEEEEEEEGGGCTTHHHHCHHHH--HT-CSEEEEECGGGH
T ss_pred HH--hcCCCCEEEEeCCCCCCCCch-------h--ccccCcEEEEEeCCCcchhhhhhhhhh--hc-CCEEEEecccCC
Confidence 33 346899999999995321100 0 123467899999876532111 11111 12 246899999963
No 63
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.77 E-value=6.1e-08 Score=101.07 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=80.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhH---H----HHHHHhhhccCCceecCCCCCCH---
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAA---I----DQLVILGEQVGVPVYTAGTEVKP--- 250 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a---~----dqL~~~~~~~gv~v~~~~~~~~p--- 250 (571)
.+..+++++|++|+||||+...|+..+...+.+|.++..|++.... + ..+.......++.+.........
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 3567999999999999999999999988888999999999864321 0 00000111111111111111111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEc
Q 008282 251 SQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILT 330 (571)
Q Consensus 251 ~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlN 330 (571)
.....+.+..+...++|++||||||....+..+ . -..+.+++|+|+..+.+. ..+....... ..-+++|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v-------~--~~~d~vl~v~d~~~~~~~-~~i~~~i~~~-~~ivvlN 201 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSETAV-------A--DLTDFFLVLMLPGAGDEL-QGIKKGIFEL-ADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH-------H--TTSSEEEEEECSCC-------CCTTHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH-------H--hhCCEEEEEEcCCCcccH-HHHHHHHhcc-ccEEEEE
Confidence 112233333344579999999999987532211 1 134777888887654321 1010000011 2357789
Q ss_pred cCCC
Q 008282 331 KLDG 334 (571)
Q Consensus 331 KlD~ 334 (571)
|+|.
T Consensus 202 K~Dl 205 (337)
T 2qm8_A 202 KADD 205 (337)
T ss_dssp CCST
T ss_pred chhc
Confidence 9994
No 64
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.60 E-value=7.6e-07 Score=101.50 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH-HHHHHHHhhhhcCe-eEEEEccCCCCC-C-hh
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE-AAALVTTFNIEIGI-TGAILTKLDGDS-R-GG 339 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~-a~~~~~~f~~~~~i-~GVIlNKlD~~~-~-~g 339 (571)
..+++.||||||...... +.....+ ..|.+++|+|+..+.. ............++ .-+|+||+|... . ..
T Consensus 80 ~~~~i~liDTPG~~df~~----~~~~~l~--~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~ 153 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTI----EVERSMR--VLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLK 153 (704)
T ss_pred CceeEEEEeCCCccchHH----HHHHHHH--HCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHH
Confidence 458999999999754322 2222222 2589999999976521 11112222222333 347899999543 2 23
Q ss_pred HHHHHHHHhCCCeE----EEecCCCC---CCCccCCchhHhhhccC--------chhHHHHHHHHH----HHhchhHHHH
Q 008282 340 AALSVKEVSGKPIK----LVGRGERM---EDLEPFYPDRMAGRILG--------MGDVLSFVEKAQ----EVMQQEDAEE 400 (571)
Q Consensus 340 ~~lsi~~~~g~PI~----fig~Ge~v---~dl~~f~p~~~~~r~lG--------~gdv~~l~e~a~----e~l~e~~~~~ 400 (571)
.+..+...++.++. +++.+..+ -|+.......+-.--+| ..+..+.++.++ +.+.+.+++.
T Consensus 154 ~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l 233 (704)
T 2rdo_7 154 VVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEEL 233 (704)
T ss_pred HHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34445566665432 22222222 11111000000000000 111222222222 3333333443
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcC
Q 008282 401 MQKKIMSANFDFNDFLKQTRTVARMG 426 (571)
Q Consensus 401 ~~~k~~~g~~~ledl~~ql~~~~k~G 426 (571)
+.+++..++++.+++...++.....|
T Consensus 234 ~e~~l~~~~l~~~~l~~~l~~~~~~~ 259 (704)
T 2rdo_7 234 MEKYLGGEELTEAEIKGALRQRVLNN 259 (704)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 44444445899999999998887755
No 65
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.57 E-value=8.7e-08 Score=94.50 Aligned_cols=86 Identities=22% Similarity=0.223 Sum_probs=57.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCc--eecCC----CCCCHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP--VYTAG----TEVKPSQIAKQ 256 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~--v~~~~----~~~~p~~v~~~ 256 (571)
.-.|++.|++||||||++.++|..++++|++|+++++|++.......+. .....++ ++... ...+...+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~--~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALL--NGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHH--TTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHh--cCccccCcceeecCCcccccccHHHH---
Confidence 3468888999999999999999999999999999999998655433332 1111111 11110 01222221
Q ss_pred HHHHHHhCCCcEEEEeCCCCCc
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~ 278 (571)
+ . ..+|+||||.+|..+
T Consensus 81 -L---~-~~pdlvIVDElG~~~ 97 (228)
T 2r8r_A 81 -L---K-AAPSLVLVDELAHTN 97 (228)
T ss_dssp -H---H-HCCSEEEESCTTCBC
T ss_pred -H---h-cCCCEEEEeCCCCCC
Confidence 1 1 368999999999753
No 66
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.48 E-value=1.4e-07 Score=104.56 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=83.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH----------HhhhccCCceecCCCCCCHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV----------ILGEQVGVPVYTAGTEVKPS 251 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~----------~~~~~~gv~v~~~~~~~~p~ 251 (571)
+.|.|+|+|+.++||||++-+|.++-.. +.+.+.++.-. ..-..-|+.+....
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~-----------i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~------ 92 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGA-----------IQMAGSVKARKAARHATSDWMAMERERGISVTTSV------ 92 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTC-----------HHHHHHHHHC--------------------CTTTE------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCc-----------ccccceeecCccccccccCChHHHHHCCCcEeece------
Confidence 4589999999999999999988644210 01111111100 00112233332211
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCee-EEEE
Q 008282 252 QIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGIT-GAIL 329 (571)
Q Consensus 252 ~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i~-GVIl 329 (571)
..+.|+++.+.||||||...+..+....| ++ .|.+++|+||..| +.....++......++. -+++
T Consensus 93 -------~~~~~~~~~iNlIDTPGHvDF~~Ev~raL----~~--~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fI 159 (548)
T 3vqt_A 93 -------MQFPYRDRVVNLLDTPGHQDFSEDTYRVL----TA--VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFV 159 (548)
T ss_dssp -------EEEEETTEEEEEECCCCGGGCSHHHHHHH----HS--CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred -------EEEEECCEEEEEEeCCCcHHHHHHHHHHH----Hh--cCceEEEeecCCCcccccHHHHHHHHHhCCceEEEE
Confidence 11246789999999999887655554444 33 3899999999877 33334455555555553 4789
Q ss_pred ccCCCC-CC-hhHHHHHHHHhCCCeE
Q 008282 330 TKLDGD-SR-GGAALSVKEVSGKPIK 353 (571)
Q Consensus 330 NKlD~~-~~-~g~~lsi~~~~g~PI~ 353 (571)
||+|.. +. ...+..+.+.++..+.
T Consensus 160 NK~Dr~~ad~~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 160 NKMDREALHPLDVMADIEQHLQIECA 185 (548)
T ss_dssp ECTTSCCCCHHHHHHHHHHHHTSEEE
T ss_pred ecccchhcchhHhhhhhhhhcCCceE
Confidence 999954 33 4455667778886554
No 67
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.45 E-value=3.2e-06 Score=96.23 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=103.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
..+.|+++|.+|+||||++..|......-. +..-++ .. ....+... .....++.+.... ..+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~-~~g~v~--~~-~~~~D~~~-~e~~~giTi~~~~-------------~~~ 70 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIH-KIGETH--EG-ASQMDWME-QEQDRGITITSAA-------------TTA 70 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC------------------------------CCSE-------------EEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCcc-cccccc--CC-ceecccch-hhhhcCceEeeee-------------EEE
Confidence 457899999999999999998875321110 000010 00 00000000 0001111111000 001
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCe-eEEEEccCCCCCC-
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDGDSR- 337 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i-~GVIlNKlD~~~~- 337 (571)
.+.++.++||||||...........+ . ..|.+++|+|+..+. ......... ...++ .-+|+||+|....
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l----~--~aD~~llVvDa~~g~~~~~~~~~~~~-~~~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSL----R--VLDGAVTVLDAQSGVEPQTETVWRQA-TTYGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHH----H--HCSEEEEEEETTTBSCHHHHHHHHHH-HHTTCCEEEEEECTTSTTCC
T ss_pred EECCeeEEEEECcCCcchHHHHHHHH----H--HCCEEEEEECCCCCCcHHHHHHHHHH-HHcCCCEEEEEECCCccccc
Confidence 13578899999999876544433222 1 258999999996541 111222222 22233 4578999996532
Q ss_pred -hhHHHHHHHHhCCCeE----EEecCCCCCCCccCCchhHhhhc--cC--------chhHHHHHHHHH----HHhchhHH
Q 008282 338 -GGAALSVKEVSGKPIK----LVGRGERMEDLEPFYPDRMAGRI--LG--------MGDVLSFVEKAQ----EVMQQEDA 398 (571)
Q Consensus 338 -~g~~lsi~~~~g~PI~----fig~Ge~v~dl~~f~p~~~~~r~--lG--------~gdv~~l~e~a~----e~l~e~~~ 398 (571)
...+..+...++.+.. .++.++.++.+...-+.....+. .| ..+..+.++.++ +.+.++++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd 223 (693)
T 2xex_A 144 FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSD 223 (693)
T ss_dssp HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCH
Confidence 2234455666665432 34444443321110000000000 00 011222233333 33333434
Q ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhcC
Q 008282 399 EEMQKKIMSA-NFDFNDFLKQTRTVARMG 426 (571)
Q Consensus 399 ~~~~~k~~~g-~~~ledl~~ql~~~~k~G 426 (571)
+++++++++ +++.+++...++.....|
T Consensus 224 -~l~e~~l~~~~~~~~~~~~~l~~~~~~~ 251 (693)
T 2xex_A 224 -ELMEKYLGDEEISVSELKEAIRQATTNV 251 (693)
T ss_dssp -HHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 445555555 899999999998887765
No 68
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.45 E-value=3.7e-06 Score=95.87 Aligned_cols=221 Identities=17% Similarity=0.189 Sum_probs=108.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHH---HhcCC---eEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYL---KKQGK---SCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQ 256 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~L---a~~G~---kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~ 256 (571)
-|.|+|+|+.++||||++-.|..+- .+.|. +..+- | +++. |+ .-|+.+......... .
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~--D-~~~~--E~------eRGITI~s~~~s~~~-----~ 76 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATT--D-WMVQ--EQ------ERGITITSAAVTTFW-----K 76 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-----------------------------------CCEEEEEE-----C
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccC--C-ChHH--HH------HcCCeEEeeeEEEEe-----c
Confidence 5899999999999999999987653 23231 01111 1 1111 11 113322211000000 0
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDG 334 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~ 334 (571)
. .....++|-+.||||||...+..+... ..+++ |.+++|+|+..| +.....++......++ .-+++||+|.
T Consensus 77 ~-~~~~~~~~~iNlIDTPGHvDF~~Ev~~----aLr~~--DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr 149 (709)
T 4fn5_A 77 G-SRGQYDNYRVNVIDTPGHVDFTIEVER----SLRVL--DGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149 (709)
T ss_dssp C-TTSCSCCEEEEEECCCSCTTCHHHHHH----HHHHC--SEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSS
T ss_pred c-CcCCCCCEEEEEEeCCCCcccHHHHHH----HHHHh--CeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccc
Confidence 0 000114678999999998865444443 33443 899999999766 2222333333223333 4588999995
Q ss_pred C-CC-hhHHHHHHHHhCCCeE----EEecCCCCCC---CccCCchhHhh--------hccCchhHHHHHHHHHHHh----
Q 008282 335 D-SR-GGAALSVKEVSGKPIK----LVGRGERMED---LEPFYPDRMAG--------RILGMGDVLSFVEKAQEVM---- 393 (571)
Q Consensus 335 ~-~~-~g~~lsi~~~~g~PI~----fig~Ge~v~d---l~~f~p~~~~~--------r~lG~gdv~~l~e~a~e~l---- 393 (571)
. +. ...+..+...++..+. .++.++.... +..+....+.+ ..-...+..+..+.++..+
T Consensus 150 ~~a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 229 (709)
T 4fn5_A 150 QGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAA 229 (709)
T ss_dssp TTCCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHH
Confidence 4 22 3444556667775443 3444433211 11100000000 0001123334443333333
Q ss_pred chhHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 008282 394 QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 426 (571)
Q Consensus 394 ~e~~~~~~~~k~~~g~~~ledl~~ql~~~~k~G 426 (571)
.+.+.+.+.+.+..++++.+++...++.....|
T Consensus 230 ~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 262 (709)
T 4fn5_A 230 AEANEELMNKYLEEGELSEAEIKEGLRLRTLAC 262 (709)
T ss_dssp HTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHhcCCccHHHHHHHHHHhhhhc
Confidence 233444556666677999999999987765544
No 69
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.44 E-value=5.7e-07 Score=100.94 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHHH
Q 008282 83 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVR 162 (571)
Q Consensus 83 ~m~~~l~~~l~~~~~~l~~~~~l~~~~i~~~l~ei~~~Ll~adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v~ 162 (571)
.||..|.+.|.. +.+ +++.+++++|.+. .++. ..+++.++....+.++.+..+|...+.+.+.
T Consensus 36 ~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (611)
T 3izq_1 36 EVFPTLKAQLQD----YQG---WDNLSLKLALFDN-------NFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVT 98 (611)
T ss_dssp CCSTTHHHHHHH----HHC---CCSSHHHHHHHHT-------TTCS---SHHHHHHHHTTCSSSCC--------------
T ss_pred HHHHHHHHHHHH----hcC---cchhHHHHHHHHh-------hccH---HHHHHHHHHHhccccccCCCChHHHHHHHHH
Confidence 456666666654 333 7777766655443 3333 6677777777777777666666655545555
Q ss_pred HHHHHH
Q 008282 163 DELVKL 168 (571)
Q Consensus 163 ~eL~~l 168 (571)
+.+.++
T Consensus 99 ~~~~~~ 104 (611)
T 3izq_1 99 QKLANI 104 (611)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 444443
No 70
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.42 E-value=9.2e-07 Score=102.60 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=55.2
Q ss_pred CCcEEEEeCCCCCcc--cHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHH-hhhhcCeeEEEEccCCCCCChh
Q 008282 265 NVDVVIVDTAGRLQI--DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTT-FNIEIGITGAILTKLDGDSRGG 339 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~--d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~-f~~~~~i~GVIlNKlD~~~~~g 339 (571)
++|++||+++|.+.. +... ...++.+.++ .+++||+|+..+ ..+.-.... ....+.|.|||+|+.+.. ...
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~--~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~-~~~ 276 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGT--LQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLV-NEV 276 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSC--BHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSC-THH
T ss_pred cCCEEEEECCCCccCCCCCCc--cHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchh-HHH
Confidence 799999999997643 1111 1134445554 689999998654 222222222 234788999999987633 222
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCC
Q 008282 340 AALSVKEVSGKPIKLVGRGERMED 363 (571)
Q Consensus 340 ~~lsi~~~~g~PI~fig~Ge~v~d 363 (571)
.+....+ .+.||..+|..+..+.
T Consensus 277 ~l~~~l~-~~~~v~vLg~lP~~~~ 299 (831)
T 4a0g_A 277 PLTSYLR-NKVPVLVLPPVPKDPS 299 (831)
T ss_dssp HHHHHTT-TSSCEEEECCCCCCTT
T ss_pred HHHHHHH-hCCCceeeCCCCCCCH
Confidence 2222221 1677777888777643
No 71
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.42 E-value=5.8e-06 Score=86.37 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=71.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+..++++|.+||||||++..|+ |..+. +...++. ..++.+.. +
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~~~~------------t~~~~~~~-----------------~ 209 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASYPFT------------TRGINVGQ-----------------F 209 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECCTTC------------SSCEEEEE-----------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCCCCe------------eeceeEEE-----------------E
Confidence 45689999999999999998886 32221 1111110 00000000 0
Q ss_pred HhCCCcEEEEeCCCCCcccHHHH--HHHHHHHh-hhCCceEEEEEeCcch-----HHHHHHHHHhhhhc-Ce-eEEEEcc
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMM--DELKDVKR-VLNPTEVLLVVDAMTG-----QEAAALVTTFNIEI-GI-TGAILTK 331 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~--~eL~~i~~-~~~pd~vlLVvda~~g-----q~a~~~~~~f~~~~-~i-~GVIlNK 331 (571)
...+.++.++||||......... .+...+.. ...++.+++|+|+... ++.......+.... ++ .-+|+||
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11356799999999864311000 01111111 2236889999997532 22223333333211 22 3478999
Q ss_pred CCCCCChhH--HHHHHHHhCCCeEEEe
Q 008282 332 LDGDSRGGA--ALSVKEVSGKPIKLVG 356 (571)
Q Consensus 332 lD~~~~~g~--~lsi~~~~g~PI~fig 356 (571)
+|....... +...+...+.|+.+++
T Consensus 290 ~Dl~~~~~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 290 IDVADEENIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred cccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 997654332 3334445566765555
No 72
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.39 E-value=7.6e-06 Score=93.07 Aligned_cols=217 Identities=18% Similarity=0.150 Sum_probs=100.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH---hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La---~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l 258 (571)
..+.|+++|..|+||||++..|..... +.| +| + .. ....+... .....++.+....
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g-~v---~--~~-~~~~d~~~-~E~~~giTi~~~~------------- 69 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG-EV---H--EG-AATMDFME-QERERGITITAAV------------- 69 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------------CCE-------------
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccc-ee---c--CC-ceeccCch-hhhhcccccccce-------------
Confidence 357899999999999999999875321 111 11 1 00 00000000 0001111111000
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
..+.+.++.+.||||||........... .. ..|.+++|+|+..+. ....... .....++ .-+|+||+|..
T Consensus 70 ~~~~~~~~~i~liDTPG~~df~~~~~~~----l~--~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 70 TTCFWKDHRINIIDTPGHVDFTIEVERS----MR--VLDGAIVVFDSSQGVEPQSETVWR-QAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp EEEEETTEEEEEECCCSSTTCHHHHHHH----HH--HCSEEEEEEETTTCSCHHHHHHHH-HHHHTTCCEEEEEECTTST
T ss_pred EEEEECCeEEEEEECcCccchHHHHHHH----HH--HCCEEEEEEECCCCcchhhHHHHH-HHHHcCCCEEEEEECCCcc
Confidence 0012357899999999986433322222 22 258999999996541 1112222 1222233 34789999965
Q ss_pred CC--hhHHHHHHHHhCCCeE----EEecCCCCCCCcc-CC--chhHh-h------hccCchhHHHHHH----HHHHHhch
Q 008282 336 SR--GGAALSVKEVSGKPIK----LVGRGERMEDLEP-FY--PDRMA-G------RILGMGDVLSFVE----KAQEVMQQ 395 (571)
Q Consensus 336 ~~--~g~~lsi~~~~g~PI~----fig~Ge~v~dl~~-f~--p~~~~-~------r~lG~gdv~~l~e----~a~e~l~e 395 (571)
.. ...+..+...++.+.. +++.+..+..+.. +. ...+. + ...-..+..+.++ +.-+.+.+
T Consensus 143 ~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 143 GADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp TCCHHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 32 2333445555665432 3333333321110 00 00000 0 0000012222233 33333344
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 008282 396 EDAEEMQKKIMSANFDFNDFLKQTRTVARMG 426 (571)
Q Consensus 396 ~~~~~~~~k~~~g~~~ledl~~ql~~~~k~G 426 (571)
++++.+.+.+..++++.+++...++.....|
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~ 253 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDL 253 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 4444445555555899999999998887765
No 73
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.36 E-value=6.9e-07 Score=100.75 Aligned_cols=142 Identities=23% Similarity=0.244 Sum_probs=81.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh---cCCeEEEEeccCCc-hhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK---QGKSCMLVAGDVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~---~G~kVlLVd~D~~R-p~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l 258 (571)
.+.|+|+|+.++||||++-+|.++-.. .| +| -+.+.+- ....|+ .-|+.+......
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g-~v--~~g~~~~D~~~~Er------eRGITI~s~~~~----------- 61 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELG-SV--DKGTTRTDNTLLER------QRGITIQTGITS----------- 61 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS-SC--CCSCCSTTCSTTHH------HHSSCSSCCCCC-----------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc-cc--ccCCcccCCcHHHH------hCCCcEEeeeEE-----------
Confidence 356899999999999999998755431 12 11 0111110 001111 124444332211
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCC-
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGD- 335 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~- 335 (571)
+.|+++.+.||||||...+..+.. ...++ .|.+++|+||..| +.....++......++ .-+++||+|..
T Consensus 62 --~~~~~~~iNlIDTPGH~DF~~Ev~----raL~~--~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 62 --FQWENTKVNIIDTPGHMDFLAEVY----RSLSV--LDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp --CBCSSCBCCCEECCCSSSTHHHHH----HHHTT--CSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred --EEECCEEEEEEECCCcHHHHHHHH----HHHHH--hCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 135789999999999886544433 33343 3899999999766 2222233333333333 35789999954
Q ss_pred -CChhHHHHHHHHhCCCe
Q 008282 336 -SRGGAALSVKEVSGKPI 352 (571)
Q Consensus 336 -~~~g~~lsi~~~~g~PI 352 (571)
........+.+.++.++
T Consensus 134 a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 134 IDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp CCSHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHhCCCc
Confidence 33445566777777665
No 74
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.24 E-value=1.5e-05 Score=76.05 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=38.4
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.|.+++++... +..+++++|++|+||||++..||. ..|.+|++++++.
T Consensus 8 ~LD~~l~Ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 8 SLDSLLGGGFA-------PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHTTSSBC-------TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred HHHHhhcCCCc-------CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 56666654322 345899999999999999999998 5689999999876
No 75
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.23 E-value=2.5e-06 Score=82.09 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=76.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC----CCCHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT----EVKPSQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~----~~~p~~v~~~~ 257 (571)
++.+|+++|.+||||||++.+|+..+... .++.+|+.|.......+.+. ..+..++.... ....... .+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~~~-~~~ 110 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERME----KHGAKVVPLNTGKECHLDAHLV-GHA 110 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHH----TTTCEEEEEECTTCSSCCHHHH-HHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHH----hcCCcEEEecCCceEeccHHHH-HHH
Confidence 35688999999999999999999877554 78999999987543222222 22333322211 1122222 333
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH-HHHHHhhhhcCeeEEEEccCCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA-ALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~-~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
+..+...++|++++||+|.+..... + . ......+.|+|+..+.+.. .....+. ....+|+||+|..
T Consensus 111 ~~~l~~~~~d~~~id~~g~i~~~~s-------~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 111 LEDLNLDEIDLLFIENVGNLICPAD-------F-D-LGTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLA 177 (226)
T ss_dssp HTTSCGGGCSEEEEECCSCSSGGGG-------C-C-CSCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGH
T ss_pred HHHHhcCCCCEEEEeCCCCccCcch-------h-h-hccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccC
Confidence 3333234679999999996532110 0 1 1234556777753321110 0011111 1246899999964
No 76
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.21 E-value=1e-05 Score=78.45 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=36.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
..+++++|++|+||||++.++|..+...|.+|++++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4689999999999999999999998888999999998864
No 77
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.21 E-value=6.6e-06 Score=84.34 Aligned_cols=117 Identities=17% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
.++-.|+++|.+||||||++..|. |.++..+...+... .....+ ++
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~~tT--------~~~~~~--~~------------------ 53 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKAGTT--------RMRVLG--VK------------------ 53 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSCCC--------CSCEEE--EE------------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCCCce--------eeEEEE--EE------------------
Confidence 345789999999999999998875 55544322211100 000000 01
Q ss_pred HHhC-CCcEEEEeCCCCCccc------HHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHH-HHHhhhhcCe-eEEEE
Q 008282 261 AKKK-NVDVVIVDTAGRLQID------KAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAAL-VTTFNIEIGI-TGAIL 329 (571)
Q Consensus 261 ~~~~-~~DvIIIDTpG~l~~d------~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~-~~~f~~~~~i-~GVIl 329 (571)
... +++++|+||||..... ..+....... .-.+|.+++|+|+..+ ...... ...... .++ .-+|+
T Consensus 54 -~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~--l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~~~pvilV~ 129 (308)
T 3iev_A 54 -NIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS--LEEADVILFMIDATEGWRPRDEEIYQNFIKP-LNKPVIVVI 129 (308)
T ss_dssp -EETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH--HHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-GCCCEEEEE
T ss_pred -ecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-cCCCEEEEE
Confidence 013 7889999999986433 2222222111 2246889999999643 222232 333332 233 45889
Q ss_pred ccCCCC
Q 008282 330 TKLDGD 335 (571)
Q Consensus 330 NKlD~~ 335 (571)
||+|..
T Consensus 130 NK~Dl~ 135 (308)
T 3iev_A 130 NKIDKI 135 (308)
T ss_dssp ECGGGS
T ss_pred ECccCC
Confidence 999975
No 78
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.20 E-value=1.7e-06 Score=95.41 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=72.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
.+.|+++|.+|+||||++.+|......-.....+.+.|.++....+... .....|+.+.... ..+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~-~E~~rGiTi~~~~-------------~~~~ 78 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWME-MEKQRGISITTSV-------------MQFP 78 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTE-------------EEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccch-hcccCCcceeeeE-------------EEEE
Confidence 4689999999999999998887431111111222333333322222111 1111222211100 0012
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCCCC--h
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDSR--G 338 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~~~--~ 338 (571)
+.++.+.||||||.......... .....|.+++|+|+..+ +.............++ .-+++||+|.... .
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~------~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~ 152 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTYR------TLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPM 152 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHH------GGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHH
T ss_pred ECCeEEEEEECCCChhHHHHHHH------HHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHH
Confidence 35789999999998544332221 12346899999999654 2222222222222233 4578999996533 2
Q ss_pred hHHHHHHHHhCCCeE
Q 008282 339 GAALSVKEVSGKPIK 353 (571)
Q Consensus 339 g~~lsi~~~~g~PI~ 353 (571)
..+..+...++.++.
T Consensus 153 ~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 153 ELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 334556677787654
No 79
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=98.16 E-value=0.00014 Score=78.44 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=70.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecC--C----CCCCHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTA--G----TEVKPSQIAKQ 256 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~--~----~~~~p~~v~~~ 256 (571)
..+++++|.+|+||||++.++|...+.+|.+|++++++.-.......+ .+...+++.... + ...+ ...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~--~~~~~~i~~~~l~~g~~~l~~~~-~~~l~~ 273 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRL--IVTAGSINAQKIKAARRDFASED-WGKLSM 273 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHH--HHHHSCCCHHHHHHTGGGTCCSC-HHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcccCCCCHHH-HHHHHH
Confidence 468999999999999999999999988899999999986544433332 222334432111 0 0111 122334
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
++..+. ...+.|.|+++.. -..+...+..+....+++..++|+|.
T Consensus 274 a~~~l~--~~~l~i~d~~~~s--~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHH--TSCEEEECCSSCB--HHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 455543 4567777877632 22344444444443345545788886
No 80
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.15 E-value=7.3e-06 Score=82.05 Aligned_cols=136 Identities=21% Similarity=0.173 Sum_probs=75.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|.+||||||++..|. |.+. .+. + .++ ..+...... +.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~-~--~~~-----------~t~~~~~~~---------------~~ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT------GLRQ-HVG-N--WPG-----------VTVEKKEGI---------------ME 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH------TTCE-EEE-E--CTT-----------SSCEEEEEE---------------EE
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCCc-ccC-C--CCC-----------eEEEeeEEE---------------EE
Confidence 3578999999999999998885 3332 111 0 011 011111000 01
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHH--HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhc-CeeEEEEccCCCCC---
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDEL--KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEI-GITGAILTKLDGDS--- 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL--~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~-~i~GVIlNKlD~~~--- 336 (571)
..+..+.|+||||..........+. ......-.++.+++|+|++...............- ...-+|+||+|...
T Consensus 47 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 47 YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence 2456799999999764422212221 11222235789999999987644333333332211 22458899999421
Q ss_pred ChhHHHHHHHHhCCCeEE
Q 008282 337 RGGAALSVKEVSGKPIKL 354 (571)
Q Consensus 337 ~~g~~lsi~~~~g~PI~f 354 (571)
..-....+...+|.|+..
T Consensus 127 ~~~~~~~l~~~lg~~~~~ 144 (271)
T 3k53_A 127 AKIDIKKMRKELGVPVIP 144 (271)
T ss_dssp CCCCHHHHHHHHSSCEEE
T ss_pred cHHHHHHHHHHcCCcEEE
Confidence 111245577788888753
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.14 E-value=1.9e-05 Score=75.65 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=35.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
..+++++|++|+||||++..|+..+...|.+|++++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 4689999999999999999999888888889999998764
No 82
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.12 E-value=5.6e-05 Score=78.94 Aligned_cols=157 Identities=22% Similarity=0.214 Sum_probs=99.2
Q ss_pred CEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCH-HHHHHHHHHH
Q 008282 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKP-SQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p-~~v~~~~l~~ 260 (571)
.+.++++|. ..+||||++..|...+.++|+++.++..- ..+ .+ . ...+++.-... .+- ...+...+..
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg--qtg---~~-~--~~~gi~~Dav~--~df~aG~ve~~~~~ 221 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG--QTG---VM-L--EGDGVALDAVR--VDFAAGAVEQMVMR 221 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS--HHH---HH-H--HSCSCCGGGSB--HHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc--chh---hh-h--hcCCcchhHHH--HHHHhhhHHHHHHH
Confidence 567889998 99999999999999999999999875421 111 11 1 12333321110 000 0112223333
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-------------HHHHHHHHHh----h--hh
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-------------QEAAALVTTF----N--IE 321 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-------------q~a~~~~~~f----~--~~ 321 (571)
+ .+++|++||++.|.+..... .....+....+|+.++||.++..+ ++....+..+ + ..
T Consensus 222 ~-~~~~d~vlVEGqGgl~~P~~--~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~ 298 (349)
T 2obn_A 222 Y-GKNYDILHIEGQGSLLHPGS--TATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGT 298 (349)
T ss_dssp H-TTTCSEEEECCCCCTTSTTC--CTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCC
T ss_pred h-ccCCCEEEEeCCCcccCcCh--HhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCC
Confidence 3 35899999999988753221 112356677788999999986321 3344444433 1 45
Q ss_pred cCeeEEEEccCCCCC--ChhHHHHHHHHhCCCe
Q 008282 322 IGITGAILTKLDGDS--RGGAALSVKEVSGKPI 352 (571)
Q Consensus 322 ~~i~GVIlNKlD~~~--~~g~~lsi~~~~g~PI 352 (571)
+.+.|+++|..+.+. ...++..+.+.+|+|+
T Consensus 299 ~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv 331 (349)
T 2obn_A 299 VPVVGIALNTAHLDEYAAKEAIAHTIAETGLPC 331 (349)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCE
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
Confidence 789999999987542 2345566778899998
No 83
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.11 E-value=1.9e-05 Score=83.21 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=65.3
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v 241 (571)
..|..+++ ++.. +..++.|.|++|+||||++.++|..+++.|.+|++++++..-. ++ ++...|++.
T Consensus 60 ~~LD~~Lg~GGl~-------~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~----~~--~a~~~g~d~ 126 (366)
T 1xp8_A 60 LSLDLALGVGGIP-------RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD----PV--YARALGVNT 126 (366)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC----HH--HHHHTTCCG
T ss_pred HHHHHHhCCCCcc-------CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh----HH--HHHHcCCCH
Confidence 46677777 4332 3458899999999999999999999998999999999985221 11 123334321
Q ss_pred ---ecCCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCCCc
Q 008282 242 ---YTAGTEVKPSQIAKQGLEEAK-KKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 242 ---~~~~~~~~p~~v~~~~l~~~~-~~~~DvIIIDTpG~l~ 278 (571)
+... ..+..++ ...++.+. ..++|+||||+...+.
T Consensus 127 ~~l~i~~-~~~~e~~-l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 DELLVSQ-PDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GGCEEEC-CSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHceeec-CCcHHHH-HHHHHHHHhcCCCCEEEEeChHHhc
Confidence 1111 1223333 23344332 3579999999988764
No 84
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.11 E-value=1.1e-05 Score=84.56 Aligned_cols=98 Identities=21% Similarity=0.387 Sum_probs=64.5
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCc
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~ 240 (571)
..|..+++ ++.. +..++.++|++|+||||++.++|..+++.|.+|++++++. +.+.. +...|++
T Consensus 49 ~~LD~~Lg~GGl~-------~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-------a~~~g~~ 114 (356)
T 1u94_A 49 LSLDIALGAGGLP-------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLGVD 114 (356)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-------HHHTTCC
T ss_pred HHHHHHhccCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-------HHHcCCC
Confidence 45677776 4332 3468999999999999999999999999999999999863 22221 2223332
Q ss_pred -----eecCCCCCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCc
Q 008282 241 -----VYTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 241 -----v~~~~~~~~p~~v~~~~l~~~-~~~~~DvIIIDTpG~l~ 278 (571)
++. . +..+.+...++.+ ...++|+||||+...+.
T Consensus 115 ~~~l~i~~---~-~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 115 IDNLLCSQ---P-DTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp GGGCEEEC---C-SSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred hhheeeeC---C-CCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 221 1 1222223333333 23689999999988765
No 85
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.10 E-value=1.8e-05 Score=79.00 Aligned_cols=135 Identities=21% Similarity=0.166 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+||||||+...|. |.+.. +.. .|+. .+..... .+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~---~pg~-----------Tv~~~~~---------------~~~~~ 46 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT------NANQR-VGN---WPGV-----------TVEKKTG---------------EFLLG 46 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEE-EEE---CTTS-----------SSEEEEE---------------EEEET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCCC-ccC---CCCc-----------eEEEEEE---------------EEEEC
Confidence 58899999999999998875 43322 110 1110 0111000 00114
Q ss_pred CCcEEEEeCCCCCcccHH----HHHH-H-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKA----MMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~----l~~e-L-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~ 337 (571)
+.++.|+||||....... ...+ + ......-.++.+++|+|++...........+. ..++ .-+|+||+|....
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~-~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF-ELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT-TSCSCEEEEEECHHHHHH
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH-HcCCCEEEEEEChhcCCc
Confidence 568999999998654321 1111 1 11221235799999999976544444333333 2333 4588999995322
Q ss_pred ---hhHHHHHHHHhCCCeEEEe
Q 008282 338 ---GGAALSVKEVSGKPIKLVG 356 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~fig 356 (571)
......+...+|.|+..+.
T Consensus 126 ~~~~~~~~~l~~~lg~~vi~~S 147 (256)
T 3iby_A 126 RGISIDTEKLESLLGCSVIPIQ 147 (256)
T ss_dssp TTCEECHHHHHHHHCSCEEECB
T ss_pred CCcHHHHHHHHHHcCCCEEEEE
Confidence 1234456778899886544
No 86
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.09 E-value=5.6e-05 Score=79.32 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=66.0
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCc
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~ 240 (571)
.+|..++| +... +..++.|.|++|+||||++..++..+...|.+|++|+++. +.+. +++..+++
T Consensus 47 ~~LD~~Lg~GGi~-------~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-------ra~rlgv~ 112 (356)
T 3hr8_A 47 LAIDIATGVGGYP-------RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-------YAKNLGVD 112 (356)
T ss_dssp HHHHHHTSSSSEE-------TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHHTCC
T ss_pred HHHHHHhccCCcc-------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-------HHHHcCCc
Confidence 47788888 5433 3579999999999999999999999998999999999864 3332 22233332
Q ss_pred eec--CCCCCCHHHHHHHHHHH-HHhCCCcEEEEeCCCCCc
Q 008282 241 VYT--AGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 241 v~~--~~~~~~p~~v~~~~l~~-~~~~~~DvIIIDTpG~l~ 278 (571)
.-. .....+..+++. .++. +....+|+||||+...+.
T Consensus 113 ~~~l~i~~~~~~e~~l~-~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 113 LKSLLISQPDHGEQALE-IVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp GGGCEEECCSSHHHHHH-HHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhhhhhccCHHHHHH-HHHHHhhhcCCCeEEehHhhhhc
Confidence 100 001223333332 2222 233679999999977654
No 87
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.05 E-value=6.5e-05 Score=85.06 Aligned_cols=209 Identities=19% Similarity=0.204 Sum_probs=103.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH---hcCCeEEEEeccCCc-hhHHHHHHHhhhccCCceecCCCCCCHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK---KQGKSCMLVAGDVYR-PAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La---~~G~kVlLVd~D~~R-p~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~ 257 (571)
+.+.|+++|++|+||||++..|+.... ..| +| .+...+. ....+. ..++.+......
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~d~~~~e~------~~giti~~~~~~---------- 68 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTTDYTPEAK------LHRTTVRTGVAP---------- 68 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSSCCSHHHH------HTTSCCSCEEEE----------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccccCCHHHH------hcCCeEEecceE----------
Confidence 457899999999999999998875432 122 22 1110110 000010 112221111000
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCe-eEEEEccCCC
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDG 334 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i-~GVIlNKlD~ 334 (571)
+.+..+.+.|+||||....... +..... ..+.+++|+|+..+- ......... ...++ .-+|+||+|.
T Consensus 69 ---~~~~~~~~nliDTpG~~~f~~~----~~~~l~--~ad~~ilVvD~~~g~~~qt~~~~~~~-~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 69 ---LLFRGHRVFLLDAPGYGDFVGE----IRGALE--AADAALVAVSAEAGVQVGTERAWTVA-ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp ---EEETTEEEEEEECCCSGGGHHH----HHHHHH--HCSEEEEEEETTTCSCHHHHHHHHHH-HHTTCCEEEEEECGGG
T ss_pred ---EeeCCEEEEEEeCCCccchHHH----HHHHHh--hcCcEEEEEcCCcccchhHHHHHHHH-HHccCCEEEEecCCch
Confidence 0124678999999997543222 222222 247889999986551 122222222 22233 3478999996
Q ss_pred CCC-hhHHHHHHHHhCCCeE----EEecCCCCCCCcc--------CC---------chhHhhhccCchhHHHHHHHHHHH
Q 008282 335 DSR-GGAALSVKEVSGKPIK----LVGRGERMEDLEP--------FY---------PDRMAGRILGMGDVLSFVEKAQEV 392 (571)
Q Consensus 335 ~~~-~g~~lsi~~~~g~PI~----fig~Ge~v~dl~~--------f~---------p~~~~~r~lG~gdv~~l~e~a~e~ 392 (571)
... ...+..+...++ .+. +++.+..+..+.. |+ |..+.+ .+....++.-+.
T Consensus 139 ~~~~~~~~~~l~~~l~-~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~r~~l~e~ 211 (665)
T 2dy1_A 139 GGDYYALLEDLRSTLG-PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE------RVQRFRQEVLEA 211 (665)
T ss_dssp CCCHHHHHHHHHHHHC-SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH------HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhC-CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHH------HHHHHHHHHHHH
Confidence 522 233444566666 321 3333333321100 00 111111 122222333333
Q ss_pred hchhHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 008282 393 MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMG 426 (571)
Q Consensus 393 l~e~~~~~~~~k~~~g~~~ledl~~ql~~~~k~G 426 (571)
+.+.+++.+.+.+..++++.+++...++.....|
T Consensus 212 ~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~ 245 (665)
T 2dy1_A 212 IVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRG 245 (665)
T ss_dssp HHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 4444444445555555899999999998887766
No 88
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.05 E-value=0.0009 Score=72.07 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=36.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYR 223 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~R 223 (571)
..+++++|.+|+||||++.++|..++. .|.+|++++.+.-.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~ 244 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA 244 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 468999999999999999999998876 58999999988643
No 89
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.04 E-value=0.00014 Score=77.34 Aligned_cols=104 Identities=18% Similarity=0.327 Sum_probs=62.5
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh------cCCeEEEEeccC-CchhHHHHHHHhhh
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGE 235 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~------~G~kVlLVd~D~-~Rp~a~dqL~~~~~ 235 (571)
.+|.+++++... +..++.|+|++|+||||++..|+..... .+.+|+++++.. +++....+ ++.
T Consensus 165 ~~LD~lLgGGI~-------~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~---~a~ 234 (400)
T 3lda_A 165 KNLDTLLGGGVE-------TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS---IAQ 234 (400)
T ss_dssp HHHHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH---HHH
T ss_pred hhHHHHhcCCcC-------CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH---HHH
Confidence 467777766433 3469999999999999999988765443 357899999864 55443322 333
Q ss_pred ccCCce-------ecCCCCCCHH---HHHHHHHHHHHhCCCcEEEEeCCCCC
Q 008282 236 QVGVPV-------YTAGTEVKPS---QIAKQGLEEAKKKNVDVVIVDTAGRL 277 (571)
Q Consensus 236 ~~gv~v-------~~~~~~~~p~---~v~~~~l~~~~~~~~DvIIIDTpG~l 277 (571)
..++.. +.. ...+.. +.+..+...+...++++||||.+...
T Consensus 235 ~~gl~~~~vleni~~~-~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 235 RFGLDPDDALNNVAYA-RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HTTCCHHHHHHTEEEE-ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HcCCChHhHhhcEEEe-ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 444321 111 011221 22333334444467889999987654
No 90
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.04 E-value=4.3e-05 Score=78.34 Aligned_cols=138 Identities=20% Similarity=0.361 Sum_probs=77.1
Q ss_pred CCCChHHHHHHHHHHHHHhhhccccCCCChhhHHHHHH---------HHHHHHHhcCCcccccccCCCCEEEEEEcCCCC
Q 008282 124 ADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIV---------RDELVKLMGGEVSELVFAKSRPTVILLAGLQGV 194 (571)
Q Consensus 124 adV~~~vv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~v---------~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~Gv 194 (571)
.+++.+-+.++++...+... .++.....+.+.. ...|..++++... +..++.++|++|+
T Consensus 42 ~gis~~~a~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGl~-------~g~i~~i~G~~gs 109 (322)
T 2i1q_A 42 EGISEKAAAKMIMGARDLCD-----LGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLE-------SQSVTEFAGVFGS 109 (322)
T ss_dssp TTCCHHHHHHHHHHHHHHTT-----CSCCCTHHHHHHHTTCCEECCSCHHHHHHTTSSEE-------TTEEEEEEESTTS
T ss_pred hCcCHHHHHHHHHHHHHhhh-----hcCCcHHHHHHHhccCCeecCCChhHHHhcCCCcc-------CCeEEEEECCCCC
Confidence 67777777777776655421 1222222221110 1356666654322 3579999999999
Q ss_pred cHHHHHHHHHHHHH------------hcC----CeEEEEeccC-CchhHHHHHHHhhhccCCce-------ecCCCCCCH
Q 008282 195 GKTTVSAKLANYLK------------KQG----KSCMLVAGDV-YRPAAIDQLVILGEQVGVPV-------YTAGTEVKP 250 (571)
Q Consensus 195 GKTTtaakLA~~La------------~~G----~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~v-------~~~~~~~~p 250 (571)
||||++..+|.... ..| .+|++++++. +++..+ ..++...|++. +... ..+.
T Consensus 110 GKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l---~~~~~~~g~~~~~~~~~l~~~~-~~~~ 185 (322)
T 2i1q_A 110 GKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERI---MQMAEHAGIDGQTVLDNTFVAR-AYNS 185 (322)
T ss_dssp SHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHH---HHHHHHHTCCHHHHHHTEEEEE-CSSH
T ss_pred CHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHH---HHHHHHcCCCHHHHhcCEEEEe-CCCH
Confidence 99999999997642 235 7999999875 455432 22333334321 1111 1222
Q ss_pred HH---HHHHHHHHHHh-CCCcEEEEeCCCCC
Q 008282 251 SQ---IAKQGLEEAKK-KNVDVVIVDTAGRL 277 (571)
Q Consensus 251 ~~---v~~~~l~~~~~-~~~DvIIIDTpG~l 277 (571)
.+ ++......+.. .++++||||+...+
T Consensus 186 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 186 DMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 21 22222233333 56888999987654
No 91
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.04 E-value=4.4e-06 Score=78.76 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=36.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
..+++|+|++|+||||++.+|+..|..+|++|.++..|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4589999999999999999999999999999999998864
No 92
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.02 E-value=1.8e-05 Score=78.92 Aligned_cols=42 Identities=38% Similarity=0.615 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++.+|+++|++||||||++..|+..|...|+.+++++.|.++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 357899999999999999999999998889998888888654
No 93
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.01 E-value=0.00016 Score=74.34 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=69.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-----CCCHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-----EVKPSQIAKQG 257 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-----~~~p~~v~~~~ 257 (571)
..+++++|.+|+||||++.++|..++.+|.+|++++++.-.......+. +...+++...... .......+..+
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~--~~~~~i~~~~l~~~~~~l~~~~~~~l~~a 145 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWGKLSMA 145 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHH--HHHTTCCHHHHHSCHHHHCSSCHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999988999999999854333333222 2223443211100 00111223344
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM 306 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~ 306 (571)
...+. ...+.+.|+++.. -..+...+..+....++...++|+|..
T Consensus 146 ~~~l~--~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 146 IGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHH--TSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHh--CCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 44443 4567777777632 223444444444333444447888873
No 94
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.00 E-value=3.8e-06 Score=92.69 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=75.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+.|+|+|.+|+||||++.+|..+-..- .+..-++. +..+....+... .....|+.+..... .+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i-~~~g~v~~~~~~~~~~~d~~~-~e~~~GiTi~~~~~-------------~~ 77 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAI-QLAGTIKSRKAARHATSDWME-LEKQRGISVTTSVM-------------QF 77 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCH-HHHHHHHTC----CCHHHHHH-HHHHHCCSSSSSEE-------------EE
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCc-ccceeeeccccccceecccch-hhhcCCeeEEEeEE-------------EE
Confidence 5689999999999999999986321100 00000000 000000111111 11112332221100 01
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-HHHHHHHHHhhhhcCe-eEEEEccCCCCCC--
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEAAALVTTFNIEIGI-TGAILTKLDGDSR-- 337 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a~~~~~~f~~~~~i-~GVIlNKlD~~~~-- 337 (571)
.+.++.+.||||||.......... .....|.+++|+|+..+ +.............++ .-+|+||+|....
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~------~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 78 PYKDYLINLLDTPGHADFTEDTYR------TLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHH------GGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCH
T ss_pred EeCCEEEEEEECCCchhHHHHHHH------HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH
Confidence 235788999999997654333222 12235899999999754 1111122222223333 4588999996432
Q ss_pred hhHHHHHHHHhCCCeE
Q 008282 338 GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ~g~~lsi~~~~g~PI~ 353 (571)
...+..+...++.++.
T Consensus 152 ~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 152 IELLDEIESILRIHCA 167 (528)
T ss_dssp HHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhhCCCce
Confidence 2344556677876544
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.99 E-value=2.3e-05 Score=82.05 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=65.0
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC-chhHHHHHHHhhhccCCc
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY-RPAAIDQLVILGEQVGVP 240 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~-Rp~a~dqL~~~~~~~gv~ 240 (571)
..|..+++ ++.. +..++.+.|++|+||||++..++..+.+.|.+|++++++.. .+. ++...|+.
T Consensus 47 ~~LD~~Lg~GGl~-------~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-------~a~~lG~~ 112 (349)
T 2zr9_A 47 ISLDVALGIGGLP-------RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-------YAKKLGVD 112 (349)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHTTCC
T ss_pred HHHHHHhccCCcc-------CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-------HHHHcCCC
Confidence 45677777 5432 35689999999999999999999999989999999998742 221 13333432
Q ss_pred e---ecCCCCCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCc
Q 008282 241 V---YTAGTEVKPSQIAKQGLEEA-KKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 241 v---~~~~~~~~p~~v~~~~l~~~-~~~~~DvIIIDTpG~l~ 278 (571)
. +.. ...+..+.+ ..+..+ ...++|+||||.+..+.
T Consensus 113 ~~~l~i~-~~~~~e~~l-~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 TDSLLVS-QPDTGEQAL-EIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp GGGCEEE-CCSSHHHHH-HHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHeEEe-cCCCHHHHH-HHHHHHHhcCCCCEEEEcChHhhc
Confidence 1 111 112233332 223322 23569999999988765
No 96
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.99 E-value=2.7e-05 Score=78.32 Aligned_cols=136 Identities=20% Similarity=0.169 Sum_probs=75.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+||||||+...|. |.+. .+.. .|+. .+..... . +..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~------g~~~-~v~~---~~g~-----------t~~~~~~--~-------------~~~ 47 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT------GSRQ-RVGN---WAGV-----------TVERKEG--Q-------------FST 47 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH------TTCE-EEEE---CTTS-----------SSEEEEE--E-------------EEC
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCc-ccCC---CCCe-----------eEEEEEE--E-------------EEe
Confidence 468999999999999998885 3332 1211 1110 0111000 0 011
Q ss_pred CCCcEEEEeCCCCCcccH-----HHHHHH-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDK-----AMMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~-----~l~~eL-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
.+..+.|+||||...... .+-..+ ..+...-.++.+++|+|+............+.+ .++ .-+|+||+|...
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE-LGIPCIVALNMLDIAE 126 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH-HTCCEEEEEECHHHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh-cCCCEEEEEECccchh
Confidence 456899999999754321 111111 111112367899999999765443333333332 233 458899999532
Q ss_pred Ch---hHHHHHHHHhCCCeEEEe
Q 008282 337 RG---GAALSVKEVSGKPIKLVG 356 (571)
Q Consensus 337 ~~---g~~lsi~~~~g~PI~fig 356 (571)
.. .....+...+|.|+.++.
T Consensus 127 ~~~~~~~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 127 KQNIRIEIDALSARLGCPVIPLV 149 (274)
T ss_dssp HTTEEECHHHHHHHHTSCEEECC
T ss_pred hhhHHHHHHHHHHhcCCCEEEEE
Confidence 21 234556777888885443
No 97
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.98 E-value=1.3e-05 Score=80.00 Aligned_cols=136 Identities=22% Similarity=0.299 Sum_probs=75.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+||||||+...|. |.+.. +. .+ | |+.+...... +..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~--~~-p-------------g~tv~~~~~~-------------~~~ 49 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALT------GTKQY-VA--NW-P-------------GVTVEKKEGV-------------FTY 49 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TTCEE-EE--EC-T-------------TSCCEEEEEE-------------EEE
T ss_pred eEEEEECCCCCCHHHHHHHHH------CCCCc-cc--CC-C-------------CceEEEEEEE-------------EEE
Confidence 468999999999999998885 43332 11 01 1 1111100000 011
Q ss_pred CCCcEEEEeCCCCCcccHHHHHH-H-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCCh--
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSRG-- 338 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~e-L-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~~-- 338 (571)
.++++.|+||||..........+ + ..+...-.++.+++|+|++..+........+.+ .++ .-+|+||+|.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~-~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILE-MEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHT-TTCCEEEEEECHHHHHHTTC
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHh-cCCCEEEEEECcCCCCccch
Confidence 46789999999975432111111 1 112212357899999999765544333333332 233 45889999953211
Q ss_pred -hHHHHHHHHhCCCeEEEe
Q 008282 339 -GAALSVKEVSGKPIKLVG 356 (571)
Q Consensus 339 -g~~lsi~~~~g~PI~fig 356 (571)
-....+...+|.|+.++.
T Consensus 129 ~~~~~~l~~~lg~~vi~~S 147 (258)
T 3a1s_A 129 KIDRYELQKHLGIPVVFTS 147 (258)
T ss_dssp CBCHHHHHHHHCSCEEECC
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 124567778888885443
No 98
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.97 E-value=1.6e-05 Score=80.77 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+|+|.+|+||||++..|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 368999999999999998887
No 99
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.7e-05 Score=71.63 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999997775
No 100
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.96 E-value=0.00012 Score=76.40 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=91.4
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCcee
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 242 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~ 242 (571)
..|.+++++- .+..+++++|.+|+||||++.++|..++..|.+|++++++.-.......+ .+...+++..
T Consensus 34 ~~LD~~~gGl--------~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rl--ls~~~~v~~~ 103 (338)
T 4a1f_A 34 VQLDNYTSGF--------NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRA--LSDLTSINMH 103 (338)
T ss_dssp HHHHHHHCSB--------CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHH--HHHHHCCCHH
T ss_pred hHHHHHhcCC--------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH--HHHhhCCCHH
Confidence 4566666632 13458999999999999999999999998999999999986543333322 2222334322
Q ss_pred cCC-CCCCHHHH--HHHHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC---cch--------
Q 008282 243 TAG-TEVKPSQI--AKQGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA---MTG-------- 308 (571)
Q Consensus 243 ~~~-~~~~p~~v--~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda---~~g-------- 308 (571)
... ...+..+. +..++..+. +..+.|.|+|+.. . ..+...+..+.... +..-++|||. ...
T Consensus 104 ~l~~g~Ls~~e~~~l~~a~~~l~--~~~l~I~d~~~~s-i-~~i~~~ir~l~~~~-gg~~lIVIDyLqlm~~~~~~~~r~ 178 (338)
T 4a1f_A 104 DLESGRLDDDQWENLAKCFDHLS--QKKLFFYDKSYVR-I-EQIRLQLRKLKSQH-KELGIAFIDYLQLMSGSKATKERH 178 (338)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHH--HSCEEEECCTTCC-H-HHHHHHHHHHHHHC-TTEEEEEEEEEECCCTHHHHHHCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHHh--cCCeEEeCCCCCc-H-HHHHHHHHHHHHhc-CCCCEEEEechHHhcCCCCCCChH
Confidence 110 12333332 234444443 3467777887643 1 23333333333322 1355778884 111
Q ss_pred ---HHHHHHHHHhhhhcCeeEEEEccCC
Q 008282 309 ---QEAAALVTTFNIEIGITGAILTKLD 333 (571)
Q Consensus 309 ---q~a~~~~~~f~~~~~i~GVIlNKlD 333 (571)
.++.+.++.+....++.-++++.+.
T Consensus 179 ~ei~~isr~LK~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 179 EQIAEISRELKTLARELEIPIIALVQLN 206 (338)
T ss_dssp CCHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 1234445667778888888888775
No 101
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.96 E-value=9.9e-05 Score=74.91 Aligned_cols=65 Identities=25% Similarity=0.465 Sum_probs=49.9
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 150 GVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 150 ~~~~~~~~~~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.+++ +++.+++.+.+..+++... ....|.+|+++|++||||||++..|+..+. .....|++|.+|
T Consensus 6 ~~s~-~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R 70 (287)
T 1gvn_B 6 NFTD-KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK 70 (287)
T ss_dssp CCCH-HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence 4555 6778889999999887632 234578999999999999999999876542 245688999876
No 102
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.95 E-value=3.2e-05 Score=79.65 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=64.0
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc------CCeEEEEeccC-CchhHHHHHHHhhh
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV-YRPAAIDQLVILGE 235 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~------G~kVlLVd~D~-~Rp~a~dqL~~~~~ 235 (571)
..|..++++... +..++.++|++|+||||++..+|...... |.+|++++++. +++..+ ..++.
T Consensus 94 ~~LD~~L~GGl~-------~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l---~~~~~ 163 (324)
T 2z43_A 94 QALDGLLAGGIE-------TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI---ENMAK 163 (324)
T ss_dssp HHHHHHTTTSEE-------TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH---HHHHH
T ss_pred hhHHHhcCCCCC-------CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH---HHHHH
Confidence 356666754322 34689999999999999999999876654 78999999975 555432 23334
Q ss_pred ccCCce-------ecCCCCCCHH---HHHHHHHHHHHh-CCCcEEEEeCCCCC
Q 008282 236 QVGVPV-------YTAGTEVKPS---QIAKQGLEEAKK-KNVDVVIVDTAGRL 277 (571)
Q Consensus 236 ~~gv~v-------~~~~~~~~p~---~v~~~~l~~~~~-~~~DvIIIDTpG~l 277 (571)
..|++. +... ..+.. +++......+.. .++++||||+...+
T Consensus 164 ~~g~~~~~~~~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 164 ALGLDIDNVMNNIYYIR-AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HTTCCHHHHHHTEEEEE-CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HhCCCHHHHhccEEEEe-CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 444421 1111 12222 122222233333 57899999987765
No 103
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.92 E-value=0.00011 Score=76.42 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=63.9
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh------cCCeEEEEeccC-CchhHHHHHHHhhh
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGE 235 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~------~G~kVlLVd~D~-~Rp~a~dqL~~~~~ 235 (571)
..|..+++++.. +..++.++|++|+||||++..+|..... .|.+|++++++. +.+.. +..++.
T Consensus 109 ~~LD~~LgGGl~-------~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~---l~~~~~ 178 (343)
T 1v5w_A 109 QEFDKLLGGGIE-------SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR---LRDIAD 178 (343)
T ss_dssp HHHHHHTTSSBC-------SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH---HHHHHH
T ss_pred hhHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHH---HHHHHH
Confidence 356667764332 3579999999999999999999987544 578999999875 45442 222333
Q ss_pred ccCCce---------ecCCCCCCHHHHHHHHHHHHHh--CCCcEEEEeCCCCCc
Q 008282 236 QVGVPV---------YTAGTEVKPSQIAKQGLEEAKK--KNVDVVIVDTAGRLQ 278 (571)
Q Consensus 236 ~~gv~v---------~~~~~~~~p~~v~~~~l~~~~~--~~~DvIIIDTpG~l~ 278 (571)
..+++. ..........+++..+...+.. .++++||||+...+.
T Consensus 179 ~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 179 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 334321 1111111122232222233333 578899999887653
No 104
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.91 E-value=0.0012 Score=70.88 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=77.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCC-CCCHHH--HHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGT-EVKPSQ--IAKQGL 258 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~-~~~p~~--v~~~~l 258 (571)
..+++++|.+|+||||++.++|...+. .|.+|+++++..-.......+ .+...+++...... ..++.+ .+..++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~--~~~~~~i~~~~l~~g~l~~~~~~~~~~a~ 277 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM--MCSEARIDMNRVRLGQLTDRDFSRLVDVA 277 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH--HHHHTTCCTTTCCGGGCCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998886 589999999875433222222 23334444322111 123332 223444
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc-----c--h-------H---HHHHHHHHhhhh
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM-----T--G-------Q---EAAALVTTFNIE 321 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~-----~--g-------q---~a~~~~~~f~~~ 321 (571)
..+. ...+.|.|+|+.. . ..+...+..+....+ .-++|+|.. . + + .....++.+...
T Consensus 278 ~~l~--~~~l~i~d~~~~s-~-~~l~~~~~~l~~~~~--~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke 351 (444)
T 2q6t_A 278 SRLS--EAPIYIDDTPDLT-L-MEVRARARRLVSQNQ--VGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARE 351 (444)
T ss_dssp HHHH--TSCEEEECCTTCB-H-HHHHHHHHHHHHHSC--CCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--cCCEEEECCCCCC-H-HHHHHHHHHHHHHcC--CCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4443 3356666665432 1 223333333333222 236677751 1 1 1 112223445556
Q ss_pred cCeeEEEEccCC
Q 008282 322 IGITGAILTKLD 333 (571)
Q Consensus 322 ~~i~GVIlNKlD 333 (571)
.++.-++++.+.
T Consensus 352 ~~v~vi~lsql~ 363 (444)
T 2q6t_A 352 LGIPIIALSQLS 363 (444)
T ss_dssp HTSCEEEEEECC
T ss_pred hCCeEEEEecCC
Confidence 777777777653
No 105
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.91 E-value=4.1e-05 Score=81.27 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=69.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh-HHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~-a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
...|+++|..|+||||++..|...+.+.|... .|... ..+... .....|+.+..... .+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~------~~~~~~~~d~~~-~e~~~GiTi~~~~~-------------~~ 70 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EVKDYGDIDKAP-EERARGITINTAHV-------------EY 70 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS------CCCCHHHHSCSH-HHHHHTCCCSCEEE-------------EE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc------cccchhhccCCH-HHHHcCCCEEeeee-------------Ee
Confidence 45789999999999999999998777766411 01100 001000 00111222110000 00
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee--EEEEccCCCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGDS 336 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~--GVIlNKlD~~~ 336 (571)
...++.+.|+||||...... .+.. .+..+|.+++|+|+..+ ....+... .....++. -+++||+|...
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~----~~~~--~~~~aD~~ilVvda~~g~~~qt~~~l~-~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIK----NMIT--GAAQMDGAILVVSAADGPMPQTREHIL-LARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHH----HHHH--HHTTCSSEEEEEETTTCCCHHHHHHHH-HHHHTTCCCEEEEEECGGGCC
T ss_pred ccCCeEEEEEECCChHHHHH----HHHH--HHHHCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCEEEEEEECccccC
Confidence 12468899999999754322 2211 22346899999999654 12222222 22234554 37899999753
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.90 E-value=4.6e-05 Score=73.74 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=61.0
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh------cCCeEEEEeccC-CchhHHHHHHHhhh
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV-YRPAAIDQLVILGE 235 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~------~G~kVlLVd~D~-~Rp~a~dqL~~~~~ 235 (571)
..|.+++++... +..+++++|++|+||||++..|+..... .+.+|++++++. +.+.... ....
T Consensus 11 ~~LD~~l~ggi~-------~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~---~~~~ 80 (243)
T 1n0w_A 11 KELDKLLQGGIE-------TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL---AVAE 80 (243)
T ss_dssp HHHHHHTTTSEE-------TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH---HHHH
T ss_pred hHHHHhhcCCCc-------CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH---HHHH
Confidence 356777765432 3469999999999999999999975432 367899998865 2332222 1222
Q ss_pred ccCCc---------eecCCCCCCHHH---HHHHHHHHHHhCCCcEEEEeCCCCCc
Q 008282 236 QVGVP---------VYTAGTEVKPSQ---IAKQGLEEAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 236 ~~gv~---------v~~~~~~~~p~~---v~~~~l~~~~~~~~DvIIIDTpG~l~ 278 (571)
..++. ++. ..+..+ .+....+.+...+.++||||.+....
T Consensus 81 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYAR---AFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp HTTCCHHHHHHTEEEEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred HcCCCHHHHhhCeEEEe---cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 23322 111 122222 22223333334678999999987653
No 107
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.90 E-value=4.1e-05 Score=78.29 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+||||||++..|. |.++..++. .|... ...+..+ ...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~---~~~tT--------r~~i~~i------------------~~~ 52 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLL------GVKVAPISP---RPQTT--------RKRLRGI------------------LTE 52 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TSCCSCCCS---SSCCC--------CSCEEEE------------------EEE
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCceeeecC---CCCce--------eEEEEEE------------------EEe
Confidence 469999999999999998886 445432221 11110 0000000 012
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHH-H-HhhhCCceEEEEEeCcch--HHHHHHHHHhhhh--cCeeEEEEccCCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKD-V-KRVLNPTEVLLVVDAMTG--QEAAALVTTFNIE--IGITGAILTKLDGDSR 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~-i-~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~--~~i~GVIlNKlD~~~~ 337 (571)
.++.++|+||||.......+-..+.. . ...-..|.+++|+|++.+ ............. -...-+|+||+|....
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 46789999999986432222111111 1 122346889999998643 1111222222221 1224588999997543
No 108
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.87 E-value=4e-05 Score=77.31 Aligned_cols=136 Identities=24% Similarity=0.198 Sum_probs=73.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|.+||||||+...|. |.+.- + + ...|+.+...... +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v-------~---------~~pg~tv~~~~~~-------------~~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-V-------G---------NWPGVTVERKSGL-------------VK 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC-C-------C---------SSSCCCCSCEEEE-------------CT
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-c-------c---------CCCCCcEEEEEEE-------------Ee
Confidence 3578999999999999998885 32210 0 0 0012211100000 01
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHH-H-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCC--
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDE-L-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR-- 337 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~e-L-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~-- 337 (571)
. ++++.|+||||..........+ + ......-.++.+++|+|++..+........+.+ .++ .-+++||+|....
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~-~~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE-TGIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHH-TCSCEEEEEECHHHHHHTT
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHh-cCCCEEEEEEChhhCCcCC
Confidence 2 5689999999975432100111 1 111111257889999999765444333333332 233 4578899995321
Q ss_pred -hhHHHHHHHHhCCCeEEEe
Q 008282 338 -GGAALSVKEVSGKPIKLVG 356 (571)
Q Consensus 338 -~g~~lsi~~~~g~PI~fig 356 (571)
......+...+|.|+..+.
T Consensus 125 ~~~~~~~l~~~lg~~vi~~S 144 (272)
T 3b1v_A 125 KKINVDKLSYHLGVPVVATS 144 (272)
T ss_dssp CCCCHHHHHHHHTSCEEECB
T ss_pred cHHHHHHHHHHcCCCEEEEE
Confidence 1234556677888875443
No 109
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.87 E-value=6.9e-05 Score=73.12 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=61.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+..|+++|.+||||||++..|. |.++. +...+.. . ....+.... .
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~------g~~~~----~~~~~~~-------~--~t~~~~~~~---------------~ 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSIL------GRKVF----HSGTAAK-------S--ITKKCEKRS---------------S 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------TSCCS----CC----------------CCSCEEEE---------------E
T ss_pred CceEEEEECCCCCCHHHHHHHHc------CCCcC----ccCCCCC-------c--eeeeEEEEE---------------E
Confidence 34679999999999999998776 32221 0111100 0 001100000 0
Q ss_pred HhCCCcEEEEeCCCCCcc---cHHHHHHHHHHHhh--hCCceEEEEEeCcch--HH--HHH-HHHHhhhhc-CeeEEEEc
Q 008282 262 KKKNVDVVIVDTAGRLQI---DKAMMDELKDVKRV--LNPTEVLLVVDAMTG--QE--AAA-LVTTFNIEI-GITGAILT 330 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~--~~pd~vlLVvda~~g--q~--a~~-~~~~f~~~~-~i~GVIlN 330 (571)
...+..+.|+||||.... +.....++...... -.++.+++|+|+... .+ .+. ....|.... ...-+|+|
T Consensus 74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEe
Confidence 124568999999997643 12223333333222 246888999997422 11 111 122233222 23568999
Q ss_pred cCCCC
Q 008282 331 KLDGD 335 (571)
Q Consensus 331 KlD~~ 335 (571)
|+|..
T Consensus 154 K~D~~ 158 (239)
T 3lxx_A 154 RKDDL 158 (239)
T ss_dssp CGGGC
T ss_pred CCccC
Confidence 99953
No 110
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.84 E-value=0.00017 Score=75.10 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCcc-----cHHHHHHHHHH--HhhhCCceEEEEEeCcc----hHHHHHHHHHhhhhcCeeEEEEccCC
Q 008282 265 NVDVVIVDTAGRLQI-----DKAMMDELKDV--KRVLNPTEVLLVVDAMT----GQEAAALVTTFNIEIGITGAILTKLD 333 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~-----d~~l~~eL~~i--~~~~~pd~vlLVvda~~----gq~a~~~~~~f~~~~~i~GVIlNKlD 333 (571)
..++.||||||.... .......+..+ ..+-.++.+++|+++.. .++....+..+...-...-+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 467999999997653 11111111111 12335788888887631 23445555555443223568899999
Q ss_pred CCCCh
Q 008282 334 GDSRG 338 (571)
Q Consensus 334 ~~~~~ 338 (571)
.....
T Consensus 215 l~~~~ 219 (360)
T 3t34_A 215 LMDKG 219 (360)
T ss_dssp GCCTT
T ss_pred cCCCc
Confidence 65433
No 111
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.78 E-value=6.9e-05 Score=77.43 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=64.6
Q ss_pred HHHHHHhc----CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEecc-CCchhHHHHHHHhhh
Q 008282 163 DELVKLMG----GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGD-VYRPAAIDQLVILGE 235 (571)
Q Consensus 163 ~eL~~llg----~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D-~~Rp~a~dqL~~~~~ 235 (571)
.+|..+|| ++.. +. ++.+.|++|+||||++..++..++++ |.+|++||+. .+++. +++
T Consensus 12 ~~LD~~LGg~~~GGl~-------~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-------ra~ 76 (333)
T 3io5_A 12 PMMNIALSGEITGGMQ-------SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-------YLR 76 (333)
T ss_dssp HHHHHHHHSSTTCCBC-------SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-------HHH
T ss_pred HHHHHHhCCCCCCCCc-------CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-------HHH
Confidence 36777777 4432 22 78999999999999999999988876 8899999985 34443 234
Q ss_pred ccCCce---ecCCCCCCHHHHHHHHHHHH---HhCCCcEEEEeCCCCCc
Q 008282 236 QVGVPV---YTAGTEVKPSQIAKQGLEEA---KKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 236 ~~gv~v---~~~~~~~~p~~v~~~~l~~~---~~~~~DvIIIDTpG~l~ 278 (571)
.+|++. +.. ...+..++....++.+ ....+++||||+...+.
T Consensus 77 ~lGvd~d~llv~-~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 77 SMGVDPERVIHT-PVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HTTCCGGGEEEE-ECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HhCCCHHHeEEE-cCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 444431 111 1223333312333333 44679999999987764
No 112
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.77 E-value=7.8e-05 Score=71.13 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCCcc------cHHHHHHHHHHHhh-hCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCC
Q 008282 264 KNVDVVIVDTAGRLQI------DKAMMDELKDVKRV-LNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLD 333 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~------d~~l~~eL~~i~~~-~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD 333 (571)
.++.+.|+||||.... .......+...... -..+.+++|+|+..+ .........+.. .++ .-+|+||+|
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~~p~i~v~nK~D 155 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TGKPIHSLLTKCD 155 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GCCCEEEEEECGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCEEEEEeccc
Confidence 4678999999996432 11111112222222 224668999998643 222223333332 222 458899999
Q ss_pred CCC
Q 008282 334 GDS 336 (571)
Q Consensus 334 ~~~ 336 (571)
...
T Consensus 156 l~~ 158 (223)
T 4dhe_A 156 KLT 158 (223)
T ss_dssp GSC
T ss_pred cCC
Confidence 754
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=5.9e-05 Score=70.22 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=54.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+.+++++|++|+||||++..++..+. ..|..|.+++++.+ .+.+....... ... ..+..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~---------~~~------~~~~~~ 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL----IFRLKHLMDEG---------KDT------KFLKTV 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH----HHHHHHHHHHT---------CCS------HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH----HHHHHHHhcCc---------hHH------HHHHHh
Confidence 46899999999999999999999887 77988888775422 22221111100 001 122333
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHH
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKD 289 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~ 289 (571)
.+.+++|+|-++....+......+..
T Consensus 99 --~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp --HTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred --cCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 36899999999865445444444433
No 114
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=3.4e-06 Score=80.76 Aligned_cols=27 Identities=44% Similarity=0.652 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQG 211 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G 211 (571)
+++++|++|+||||++..|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 689999999999999999999888667
No 115
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.77 E-value=4.2e-05 Score=75.59 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
++..|+|+|.+||||||++..|.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 35679999999999999998876
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.76 E-value=6.5e-05 Score=68.64 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=47.2
Q ss_pred CCCcEEEEeCCCCCcccHH-HHHHH-HHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCCC---
Q 008282 264 KNVDVVIVDTAGRLQIDKA-MMDEL-KDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDSR--- 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~-l~~eL-~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~~--- 337 (571)
.+..+.|+||||....... ....+ ........++.+++|+|+...+........+.. .++ .-+|.||+|....
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLME-MGANLLLALNKMDLAKSLGI 126 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHH-TTCCEEEEEECHHHHHHTTC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHh-cCCCEEEEEEchHhccccCh
Confidence 3567899999997543210 00111 111122357889999999765433333333322 232 4578899994311
Q ss_pred hhHHHHHHHHhCCCeE
Q 008282 338 GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ~g~~lsi~~~~g~PI~ 353 (571)
......++...+.|+.
T Consensus 127 ~~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 127 EIDVDKLEKILGVKVV 142 (165)
T ss_dssp CCCHHHHHHHHTSCEE
T ss_pred hhHHHHHHHHhCCCEE
Confidence 1123455666676653
No 117
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.76 E-value=0.00013 Score=72.03 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++..|+++|.+||||||++..|. |.++...... +. +......... .
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~------~~~~~~~~~~-~~----------~~T~~~~~~~-----------------~ 65 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL------GQRRFFSRLG-AT----------SVTRACTTGS-----------------R 65 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH------TSCCC--------------------CCSCEEEE-----------------E
T ss_pred CceEEEEECCCCCcHHHHHHHHh------CCCCccccCC-CC----------CccccEEEEE-----------------E
Confidence 34678999999999999997775 3333211100 00 0000000000 0
Q ss_pred HhCCCcEEEEeCCCCCcccHHH----HHHHHHH--HhhhCCceEEEEEeCcch-H---HHHHHHH-Hhhhhc-C-eeEEE
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAM----MDELKDV--KRVLNPTEVLLVVDAMTG-Q---EAAALVT-TFNIEI-G-ITGAI 328 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l----~~eL~~i--~~~~~pd~vlLVvda~~g-q---~a~~~~~-~f~~~~-~-i~GVI 328 (571)
...+..++|+||||........ ..++... ...-.++.+++|+|+..- . .....+. .|...+ + ..-++
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 1246789999999986433222 1222111 112357889999998522 1 2222222 232211 2 24577
Q ss_pred EccCCCCCC-h---------hHHHHHHHHhCCCe
Q 008282 329 LTKLDGDSR-G---------GAALSVKEVSGKPI 352 (571)
Q Consensus 329 lNKlD~~~~-~---------g~~lsi~~~~g~PI 352 (571)
.||.|.... . ..+..+.+.+|.++
T Consensus 146 ~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 146 TRKEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp ECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred EchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 899996431 1 22344555666655
No 118
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.73 E-value=0.0001 Score=75.19 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=62.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..+|+++|++||||||++..|. |.++.+++.. +.. +.....++ + .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~---~~t-----Tr~~~~gi--~-------------------~ 52 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL------GQKISITSRK---AQT-----TRHRIVGI--H-------------------T 52 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH------TCSEEECCCC---SSC-----CSSCEEEE--E-------------------E
T ss_pred CCEEEEECCCCCCHHHHHHHHH------CCCccccCCC---CCc-----ceeeEEEE--E-------------------E
Confidence 4589999999999999998887 5666544321 111 00000011 1 1
Q ss_pred hCCCcEEEEeCCCCC-cccHHHHHHHHH-HHhhh-CCceEEEEEeCcchH-HHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRL-QIDKAMMDELKD-VKRVL-NPTEVLLVVDAMTGQ-EAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l-~~d~~l~~eL~~-i~~~~-~pd~vlLVvda~~gq-~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
+.++.++++||||.. .....+-..+.. ....+ ..|.+++|+|+..-. .....+......-...-+|+||+|...
T Consensus 53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 245689999999975 211111111110 11111 246678889984211 111222222211122457889999765
No 119
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.73 E-value=0.00027 Score=69.94 Aligned_cols=42 Identities=31% Similarity=0.565 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
..|.+|+++|++||||||++..|+..+ +..+.+++.|.+|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence 457899999999999999999888765 345678999998753
No 120
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.73 E-value=0.0031 Score=60.65 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
....|+++|.+||||||++..|.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35679999999999999998775
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.73 E-value=0.00022 Score=65.85 Aligned_cols=132 Identities=20% Similarity=0.180 Sum_probs=70.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+..|+++|.+||||||++..|+ |.+.. +. +.|+ ..+...... +.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~---~~~~-----------~t~~~~~~~---------------~~ 50 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT------GENVY-IG---NWPG-----------VTVEKKEGE---------------FE 50 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TTCEE-EE---ECTT-----------SCCEEEEEE---------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcc-cc---CCCC-----------eeccceEEE---------------EE
Confidence 4579999999999999998876 22221 11 1111 001110000 01
Q ss_pred hCCCcEEEEeCCCCCccc-----HHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhh-hcCeeEEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQID-----KAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNI-EIGITGAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d-----~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~-~~~i~GVIlNKlD~~~ 336 (571)
..++.+.|+||||..... ..+.. .......++.+++|+|+...+........... ..+ .-+|.||+|...
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIAR---DYIINEKPDLVVNIVDATALERNLYLTLQLMEMGAN-LLLALNKMDLAK 126 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHH---HHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCC-EEEEEECHHHHH
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHH---HHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCC-EEEEEEhhhccc
Confidence 135679999999976432 11111 11121246788999998765443333333322 222 357889999431
Q ss_pred C---hhHHHHHHHHhCCCeEE
Q 008282 337 R---GGAALSVKEVSGKPIKL 354 (571)
Q Consensus 337 ~---~g~~lsi~~~~g~PI~f 354 (571)
. ...+..++...+.|+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~ 147 (188)
T 2wjg_A 127 SLGIEIDVDKLEKILGVKVVP 147 (188)
T ss_dssp HTTCCCCHHHHHHHHTSCEEE
T ss_pred cccchHHHHHHHHHhCCCeEE
Confidence 1 12345566667776643
No 122
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.71 E-value=0.00021 Score=63.72 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=47.7
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHH---HHHhhhhcCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AAL---VTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~---~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
..+++.|+||||........ .. .. ...+.+++|+|....... ... +..+....++ .-+|+||+|...
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~-~~---~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMR-DQ---YM--RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHH-HH---HH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEEEECCCchhhhHHH-HH---hh--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 35678999999975432211 11 11 125788999998654322 111 2222211122 458999999543
Q ss_pred ---ChhHHHHHHHHhCCCeEEE
Q 008282 337 ---RGGAALSVKEVSGKPIKLV 355 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~fi 355 (571)
....+..++...+.|+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~ 144 (166)
T 2ce2_X 123 RTVESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEE
T ss_pred cccCHHHHHHHHHHcCCeEEEe
Confidence 2334555666778776443
No 123
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.71 E-value=0.00047 Score=69.44 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=34.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~ 221 (571)
..+++++|++|+||||++..||..++.. |.+|++++.+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 4699999999999999999999988865 88999998875
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.70 E-value=0.00066 Score=70.79 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=37.9
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh---c---CCeEEEEecc
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK---Q---GKSCMLVAGD 220 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~---~---G~kVlLVd~D 220 (571)
..|..++++... +..++.++|++|+||||++..|+..+.. . |-+|++|++.
T Consensus 118 ~~LD~lL~ggi~-------~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 118 KSLDKLLGGGIE-------TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp HHHHHHHTSSEE-------SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred HHHHHHhcCCCC-------CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 356666664332 4579999999999999999999987643 2 3588888874
No 125
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.70 E-value=0.00053 Score=66.29 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=39.8
Q ss_pred HHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHH-HhcCCeEEEEeccCC
Q 008282 164 ELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVY 222 (571)
Q Consensus 164 eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~L-a~~G~kVlLVd~D~~ 222 (571)
.|.++++++.. +..++.++|.+|+||||++.++|... .+.|.+|++++.+..
T Consensus 18 ~LD~~l~GGl~-------~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 18 GFDELIEGGFP-------EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTGGGTTTSEE-------TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred HHHHhhcCCCC-------CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 34555654332 34689999999999999999998764 556899999998854
No 126
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.69 E-value=0.0003 Score=67.23 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=37.7
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHh------cCCeEEEEeccC
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKK------QGKSCMLVAGDV 221 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~------~G~kVlLVd~D~ 221 (571)
..|.+++++... +..+++++|++|+||||++..|+..+.. .+.++++++.+.
T Consensus 12 ~~LD~~l~ggi~-------~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 12 KSLDKLLGGGIE-------TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp HHHHHHTTSSEE-------SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hhHHhHhcCCCC-------CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 356667754332 3579999999999999999999876543 245677887754
No 127
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.66 E-value=0.00022 Score=75.45 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=68.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh-HHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA-AIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~-a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..|+++|..|+||||++..|.....+.|.. .|... ..+... .....|+.+-.... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~-------~~~~~~~~d~~~-~e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGA-------KFKKYEEIDNAP-EERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSB-------CCCCHHHHHSCC-EEEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCcc-------ccchhhhhhcCH-HHHhcCcEEEeeeE-------------Eec
Confidence 468999999999999999998877666642 11111 111100 00112222111000 011
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCee--EEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGIT--GAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~--GVIlNKlD~~~ 336 (571)
..++.+.||||||... ....+ ...+...|.+++|+|+..+ ....+... .....++. -+++||+|...
T Consensus 63 ~~~~~~~iiDtpG~~~----f~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 TAARHYAHTDCPGHAD----YVKNM--ITGTAPLDGCILVVAANDGPMPQTREHLL-LARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSCEEEEEECSSHHH----HHHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHHH-HHHHTTCCCEEEEEECGGGCS
T ss_pred cCCeEEEEEECCChHH----HHHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHHH-HHHHcCCCeEEEEEECcccCC
Confidence 2568899999999632 22222 2223356899999999764 12222222 22234554 47899999653
No 128
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.66 E-value=0.00047 Score=63.68 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=45.1
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhhcC-eeEEEEccCCCCC---Ch
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIEIG-ITGAILTKLDGDS---RG 338 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~~~-i~GVIlNKlD~~~---~~ 338 (571)
+.+.|+||||....... . ... .-..+.+++|+|+...... ......+....+ ..-+|+||+|... ..
T Consensus 93 ~~~~i~Dt~G~~~~~~~-~---~~~--~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~ 166 (208)
T 3clv_A 93 IKFDIWDTAGQERYASI-V---PLY--YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDI 166 (208)
T ss_dssp EEEEEEECTTGGGCTTT-H---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCH
T ss_pred eEEEEEECCCcHHHHHH-H---HHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCH
Confidence 78999999996432211 1 111 1245889999999766332 222222322222 3458999999322 12
Q ss_pred hHHHHHHHHhCCCeE
Q 008282 339 GAALSVKEVSGKPIK 353 (571)
Q Consensus 339 g~~lsi~~~~g~PI~ 353 (571)
..+...+...+.|+.
T Consensus 167 ~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 167 LEVQKYAQDNNLLFI 181 (208)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 344555556666553
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.65 E-value=0.00025 Score=77.15 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHH---HHHHhhhCCceEEEEEeCcchH------HHHHHHHHhhhhcCeeEEEEccCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQ------EAAALVTTFNIEIGITGAILTKLDG 334 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL---~~i~~~~~pd~vlLVvda~~gq------~a~~~~~~f~~~~~i~GVIlNKlD~ 334 (571)
.++.+.|+||||..... ...... ......-.+|.+++|+|++.+. ........+. . ...-+|+||+|.
T Consensus 279 ~g~~l~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~-~piIvV~NK~Dl 355 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAG-EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A-AKFLTVANKLDR 355 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T-SEEEEEEECTTS
T ss_pred CCeEEEEEECCCCCcch-hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C-CCEEEEEECcCC
Confidence 46789999999975321 111111 1112233568899999986442 2222222222 2 224578999996
Q ss_pred CCC
Q 008282 335 DSR 337 (571)
Q Consensus 335 ~~~ 337 (571)
...
T Consensus 356 ~~~ 358 (476)
T 3gee_A 356 AAN 358 (476)
T ss_dssp CTT
T ss_pred CCc
Confidence 543
No 130
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.64 E-value=0.00021 Score=71.53 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|.+||||||++..|.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 368999999999999998886
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.62 E-value=6.2e-05 Score=81.18 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
..|+++|.+||||||+...|. |.++..+... |+.. . ...... +.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~~---~g~t-----~----~~~~~~-----------------~~~ 68 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIA------GERISIVEDT---PGVT-----R----DRIYSS-----------------AEW 68 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHE------EEEEC-----------------------CEEEE-----------------CTT
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCCCcccCCC---CCcc-----e----eEEEEE-----------------EEE
Confidence 479999999999999998885 4444322211 1110 0 000000 113
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHH--hhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVK--RVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~--~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.+..+.|+||||....+.....++.... ..-.+|.+++|+|+..+ ......+.... ..++ .-+|+||+|..
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~-~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY-RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHT-TCCSCEEEEEECC---
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHH-HcCCCEEEEEECccch
Confidence 5678999999996532211122221111 11236889999998653 22222223222 2333 45788999964
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.61 E-value=0.00015 Score=71.19 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=61.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe--ccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd--~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
+..+++++|+.|+||||++..++..+..+|.+|+++. .|. | +. . ......|+...... .....+ .++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~-~---~i~srlG~~~~~~~-~~~~~~----i~~ 79 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI-R---NIQSRTGTSLPSVE-VESAPE----ILN 79 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC-S---SCCCCCCCSSCCEE-ESSTHH----HHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH-H---HHHHhcCCCccccc-cCCHHH----HHH
Confidence 4579999999999999999999999999999999994 343 2 21 1 23444554322111 112222 223
Q ss_pred HHH----hCCCcEEEEeCCCCCcccHHHHHHHHHHHh
Q 008282 260 EAK----KKNVDVVIVDTAGRLQIDKAMMDELKDVKR 292 (571)
Q Consensus 260 ~~~----~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~ 292 (571)
.+. ...+|+|+||-+-.+.. .....+..+..
T Consensus 80 ~i~~~~~~~~~dvViIDEaQ~l~~--~~ve~l~~L~~ 114 (223)
T 2b8t_A 80 YIMSNSFNDETKVIGIDEVQFFDD--RICEVANILAE 114 (223)
T ss_dssp HHHSTTSCTTCCEEEECSGGGSCT--HHHHHHHHHHH
T ss_pred HHHHHhhCCCCCEEEEecCccCcH--HHHHHHHHHHh
Confidence 332 23599999999876542 34445544443
No 133
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.60 E-value=0.00097 Score=72.62 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~ 222 (571)
+..+++++|.+|+||||++.++|..++.+ |.+|++++++.-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 35689999999999999999999999876 999999999864
No 134
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.60 E-value=0.0002 Score=66.17 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=42.3
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-----HHHHHHHHHhhhh-----cCe-eEEEEccC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-----QEAAALVTTFNIE-----IGI-TGAILTKL 332 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-----q~a~~~~~~f~~~-----~~i-~GVIlNKl 332 (571)
..+.+.|+||||......... . ..-..+.+++|+|+... .+....+..+... .++ .-+|.||+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~----~--~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~ 145 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRK----L--ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHH----H--HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECT
T ss_pred CceEEEEEeCCChHHHHHHHH----H--HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEch
Confidence 456799999999654322111 1 12245889999999733 1222222222111 122 35788999
Q ss_pred CCCCC--hhHHHHHHHHhCC
Q 008282 333 DGDSR--GGAALSVKEVSGK 350 (571)
Q Consensus 333 D~~~~--~g~~lsi~~~~g~ 350 (571)
|.... ...+...+...+.
T Consensus 146 Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 146 DLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp TSTTCCCHHHHHHHHCTTCC
T ss_pred hcccccCHHHHHHHHHhcCC
Confidence 96432 2233334444444
No 135
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.59 E-value=0.00036 Score=62.34 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=37.6
Q ss_pred CCCcEEEEeCCCCCcc---cHHHHHHHHHHHhhhCCceEEEEEeCcch-HHH-HHHHHHhhh-hcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQI---DKAMMDELKDVKRVLNPTEVLLVVDAMTG-QEA-AALVTTFNI-EIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~---d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q~a-~~~~~~f~~-~~~i~GVIlNKlD~~~ 336 (571)
.+..+.|+||||.... .......... ..-..+.+++|+|+... ... ......+.. ..+ .-+|.||+|...
T Consensus 47 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 47 DRGRFLLVDTGGLWSGDKWEKKIQEKVDR--ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPK 122 (161)
T ss_dssp TTEEEEEEECGGGCSSSSCCHHHHHHHHH--HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGG
T ss_pred CCceEEEEECCCCCCccchHHHHHHHHHH--HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccccc
Confidence 3457899999997642 1112211111 12245788999998643 111 111222221 222 458999999653
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.59 E-value=9.8e-05 Score=70.29 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|++||||||++..|.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999997775
No 137
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.59 E-value=9.6e-05 Score=76.96 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
.|+++|.+||||||+...|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 68999999999999998885
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.59 E-value=0.00019 Score=76.91 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccC
Q 008282 159 KIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVG 238 (571)
Q Consensus 159 ~~v~~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~g 238 (571)
..+.+.+.+.+...... .....+..|+++|.+||||||++..|. |.....+. + + ++.. .+...
T Consensus 153 ~~L~~~i~~~l~~~~~~--~~~~~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~-~-~-~gtT------~d~~~ 215 (436)
T 2hjg_A 153 GDLLDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVS-N-V-AGTT------RDAVD 215 (436)
T ss_dssp HHHHHHHHHTGGGCCSS--CCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC------------------CC
T ss_pred HHHHHHHHHhcCccccc--cccccCcEEEEEcCCCCCHHHHHHHHh------CCCceeec-C-C-CCce------eeeeE
Confidence 34555666555321110 012245678999999999999998776 32221111 1 1 1110 00000
Q ss_pred CceecCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccH-----HHHHHHHHHHhhhCCceEEEEEeCcch---HH
Q 008282 239 VPVYTAGTEVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDK-----AMMDELKDVKRVLNPTEVLLVVDAMTG---QE 310 (571)
Q Consensus 239 v~v~~~~~~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~-----~l~~eL~~i~~~~~pd~vlLVvda~~g---q~ 310 (571)
..+ ...+..+.|+||||...... +....+..+...-.++.+++|+|+..+ ++
T Consensus 216 ~~~--------------------~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~ 275 (436)
T 2hjg_A 216 TSF--------------------TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD 275 (436)
T ss_dssp EEE--------------------EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred EEE--------------------EECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHH
Confidence 000 11345799999999632110 111222222222335889999998654 33
Q ss_pred HHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 311 AAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 311 a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
. ..+......-...-+|+||+|...
T Consensus 276 ~-~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 276 K-RIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp H-HHHHHHHHTTCEEEEEEECGGGSC
T ss_pred H-HHHHHHHHcCCcEEEEEECccCCC
Confidence 2 233222222223457899999643
No 139
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.59 E-value=0.00014 Score=78.32 Aligned_cols=65 Identities=15% Similarity=0.282 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---------HHHHHHHHhhhhcCee--EEEEccC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGIT--GAILTKL 332 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---------~a~~~~~~f~~~~~i~--GVIlNKl 332 (571)
+++.++||||||.-.. ...+.. .+..+|.++||+|+..+. ...+.+.. ....++. -+++||+
T Consensus 93 ~~~~~~iiDTPGh~~f----~~~~~~--~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~-~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSF----VPNMIG--GASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKTAGVKHLIVLINKM 165 (439)
T ss_pred CCeEEEEEECCChHHH----HHHHHh--hHhhCCEEEEEEECCCCccccccCCCchHHHHHHH-HHHcCCCeEEEEeecC
Confidence 5678999999996432 222211 122468999999997641 12222221 1233443 4789999
Q ss_pred CCC
Q 008282 333 DGD 335 (571)
Q Consensus 333 D~~ 335 (571)
|..
T Consensus 166 Dl~ 168 (439)
T 3j2k_7 166 DDP 168 (439)
T ss_pred CCc
Confidence 964
No 140
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.58 E-value=0.00052 Score=62.47 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=69.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..-|+++|.+||||||++..|... .+... +....++.++......+ .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~--------------~~~~~-------~~~t~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE--------------TFGKQ-------YKQTIGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG--------------GTTHH-------HHHTTTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC--------------cCCCC-------CCCceeEEEEEEEEEeC------------C
Confidence 346889999999999999877521 11111 11122222221100000 0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHH---HHHhhh---hcCeeEEEEccCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AAL---VTTFNI---EIGITGAILTKLD 333 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~---~~~f~~---~~~i~GVIlNKlD 333 (571)
...+.+.|+||||........ ... .-..+.+++|+|+...... ... +..+.. .....-+|.||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKML----DKY--IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTH----HHH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchh----hHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 023789999999975322111 111 2245889999998765332 111 222211 2232467899999
Q ss_pred CCC----ChhHHHHHHHHhCCCeEE
Q 008282 334 GDS----RGGAALSVKEVSGKPIKL 354 (571)
Q Consensus 334 ~~~----~~g~~lsi~~~~g~PI~f 354 (571)
... ....+..++...+.|+..
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHF 151 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred cccccccCHHHHHHHHHHcCCcEEE
Confidence 642 123445566667766533
No 141
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.58 E-value=0.00067 Score=62.91 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
....|+++|.+||||||++..|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999998875
No 142
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.56 E-value=0.00057 Score=62.00 Aligned_cols=82 Identities=18% Similarity=0.096 Sum_probs=44.6
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh--hcCe-eEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI--EIGI-TGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~--~~~i-~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||......... .. .-..+.+++|+|+........ ....+.. ..++ .-+|+||+|...
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTR----SY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHH----HH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCChHhhhhHH----HH--hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 46799999999643322111 11 123588999999876532211 1111211 1122 458899999642
Q ss_pred --ChhHHHHHHHHhCCCe
Q 008282 337 --RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~ 154 (179)
T 1z0f_A 137 DVTYEEAKQFAEENGLLF 154 (179)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 1234455555666655
No 143
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.54 E-value=0.00041 Score=69.15 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+|+||||++..|.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998876
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.54 E-value=0.00014 Score=78.99 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=32.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHH--H-HHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDEL--K-DVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL--~-~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
+++.+.|+||||.-... ...... . .....-.+|.+++|+|+..+ ........... .. ..-+|+||+|...
T Consensus 270 ~g~~v~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~-~~-piivV~NK~Dl~~ 344 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK-HR-PLILVMNKIDLVE 344 (462)
T ss_dssp TTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT-TS-CEEEEEECTTSSC
T ss_pred CCEEEEEEECCccccch-hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc-CC-cEEEEEECCCCCc
Confidence 56789999999974321 111111 1 11122346889999998644 22222222222 22 3458899999653
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.53 E-value=0.0074 Score=62.08 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH-
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK- 262 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~- 262 (571)
.++|+|++|+||||++..++..+... +..+..++|...... .+-+.......+.+.-. ......++.......+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~l~~~~~~--~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF-TAIIGEIARSLNIPFPR--RGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH-HHHHHHHHHHTTCCCCS--SCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH-HHHHHHHHHHhCccCCC--CCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999888776 688888887554421 11122222333333211 12233343333322222
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHH
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVK 291 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~ 291 (571)
.....++|||=+..+ +......+..+.
T Consensus 123 ~~~~~vlilDE~~~l--~~~~~~~L~~~~ 149 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL--APDILSTFIRLG 149 (389)
T ss_dssp TTCCEEEEEETGGGS--CHHHHHHHHHHT
T ss_pred cCCeEEEEEECcccc--chHHHHHHHHHH
Confidence 244679999988766 444555554443
No 146
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.53 E-value=0.00023 Score=64.10 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh--cC-eeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE--IG-ITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~--~~-i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||........ ... .-..+.+++|+|+...... ......+... .+ ..-+|+||+|....
T Consensus 51 ~~~~~l~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTIT----TAY--YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCC----HHH--HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC
T ss_pred EEEEEEEeCCCChhhhhhH----HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc
Confidence 4678999999964321110 111 1234788999998755322 1112222211 12 24588999996322
Q ss_pred --hhHHHHHHHHhCCCeEE
Q 008282 338 --GGAALSVKEVSGKPIKL 354 (571)
Q Consensus 338 --~g~~lsi~~~~g~PI~f 354 (571)
...+..++...+.|+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (170)
T 1g16_A 125 VTADQGEALAKELGIPFIE 143 (170)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCeEEE
Confidence 23345566667777633
No 147
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.52 E-value=0.00014 Score=65.40 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=44.8
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHh---hhhcCeeEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTF---NIEIGITGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f---~~~~~i~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||....... . ... .-..+.+++|+|+....... .....+ ....+ .-+|+||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAI-T---KAY--YRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDS 125 (168)
T ss_dssp EEEEEEECCTTGGGTTCC-C---HHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC
T ss_pred EEEEEEEcCCCcHhHHHH-H---HHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccc
Confidence 568999999995432110 0 111 12358889999986553221 111211 11222 458899999532
Q ss_pred --ChhHHHHHHHHhCCCeE
Q 008282 337 --RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI~ 353 (571)
....+..++...+.|+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 23344556666777653
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.52 E-value=0.00032 Score=67.11 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+..++++|++|+||||++..++..+...|.++..++++.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4578999999999999999999999988999999987643
No 149
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.51 E-value=0.00034 Score=64.86 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh--cC-eeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE--IG-ITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~--~~-i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||......... .. .-..+.+++|+|+...... ......+... -+ ..-+|+||+|....
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITS----SY--YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHH----HH--HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEECCCcHhhhhhHH----HH--HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 36799999999643321111 11 1235889999998765322 1111112111 12 24578899995422
Q ss_pred ---hhHHHHHHHHhCCCeEEE
Q 008282 338 ---GGAALSVKEVSGKPIKLV 355 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~fi 355 (571)
...+..++...+.|+..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 138 VVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp CSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCHHHHHHHHHHcCCcEEEE
Confidence 234455667778776443
No 150
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.51 E-value=0.00086 Score=67.05 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc----------CCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----------GKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~----------G~kVlLVd~D~ 221 (571)
+..+++++|++|+||||++..++..++.. +.+|++++.+-
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 35699999999999999999999877642 46888888764
No 151
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.50 E-value=0.00046 Score=62.99 Aligned_cols=82 Identities=17% Similarity=0.102 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhhhc--Ce-eEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIEI--GI-TGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~~~--~i-~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||........ ... .-..+.+++|+|+..... .......+.... ++ .-+|+||+|....
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLA----PMY--YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp EEEEEEEECCCSGGGGGGT----HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCCChhhhhhh----HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 4689999999964321111 111 123588899999875533 222222222211 22 4578899996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 008282 338 ---GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI 352 (571)
...+..++...+.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (181)
T 2efe_B 134 KVTAEDAQTYAQENGLFF 151 (181)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHcCCEE
Confidence 233444555666655
No 152
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.49 E-value=0.00062 Score=73.54 Aligned_cols=65 Identities=12% Similarity=0.323 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---------HHHHHHHHhhhhcCe--eEEEEccC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTKL 332 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---------~a~~~~~~f~~~~~i--~GVIlNKl 332 (571)
.++.++|+||||.-.. ...+ +..+..+|.++||+|+..+. ...+.+. .....++ .-+++||+
T Consensus 83 ~~~~~~iiDtPGh~~f----~~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDF----IKNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp SSEEEEEEECCCCTTH----HHHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHTTCCEEEEEEECG
T ss_pred CCceEEEEECCCcHHH----HHHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHHcCCCeEEEEEEcc
Confidence 4678999999996432 2221 22234578999999997652 1222221 2223454 34679999
Q ss_pred CCC
Q 008282 333 DGD 335 (571)
Q Consensus 333 D~~ 335 (571)
|..
T Consensus 156 Dl~ 158 (458)
T 1f60_A 156 DSV 158 (458)
T ss_dssp GGG
T ss_pred ccc
Confidence 965
No 153
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.49 E-value=0.00016 Score=67.07 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHH---HHHhhhhcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAAL---VTTFNIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~---~~~f~~~~~i-~GVIlNKlD~~~- 336 (571)
.+++.|+||||...... .... ..-..+.+++|+|...... .... +..+....++ .-+|+||+|...
T Consensus 68 ~~~~~l~Dt~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 68 TCLLDILDTAGQEEYSA----MRDQ--YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp EEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred EEEEEEEECCChHHHHH----HHHH--hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 46799999999642111 1111 1123578899999865532 2111 2222211122 358999999543
Q ss_pred --ChhHHHHHHHHhCCCeE
Q 008282 337 --RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI~ 353 (571)
....+..++...+.|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 142 TVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp CSCHHHHHHHHHHHTCCEE
T ss_pred cCCHHHHHHHHHHcCCeEE
Confidence 23445566677777763
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.49 E-value=0.00026 Score=76.99 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---------HHHHHHHHhhhhcCe--eEEEEccC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTKL 332 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---------~a~~~~~~f~~~~~i--~GVIlNKl 332 (571)
.++.+.|+||||.-....... ..+...|.+++|+|+..+. ...+.+ .+....++ .-+++||+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~------~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~-~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAI------MGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHH------HHHTTCSEEEEEEECCC------CCCCHHHHHHH-HHHHHTTCCCEEEEEECG
T ss_pred CCceEEEEECCCcHHHHHHHH------HhhhhCCEEEEEEECCCCccccccchhhhHHHHH-HHHHHcCCCcEEEEEECc
Confidence 568899999999754322221 1223468999999997641 111111 12223343 45789999
Q ss_pred CCCC
Q 008282 333 DGDS 336 (571)
Q Consensus 333 D~~~ 336 (571)
|...
T Consensus 182 Dl~~ 185 (483)
T 3p26_A 182 DNVD 185 (483)
T ss_dssp GGGT
T ss_pred Cccc
Confidence 9653
No 155
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.48 E-value=0.00064 Score=62.67 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|.+||||||++..|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999997774
No 156
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.47 E-value=0.00096 Score=71.85 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=60.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+..|+++|.+|+||||++..|. |.....+.. .++.. .+.... .+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~---~~gtt------~~~~~~-~~------------------- 238 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN---VAGTT------RDAVDT-SF------------------- 238 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC---------------CTTSE-EE-------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHh------CCCccccCC---CCCeE------EEEEEE-EE-------------------
Confidence 45678999999999999998775 322222221 11110 000000 00
Q ss_pred HhCCCcEEEEeCCCCCcc-----cHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe-eEEEEccCC
Q 008282 262 KKKNVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI-TGAILTKLD 333 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i-~GVIlNKlD 333 (571)
...+..+.|+||||.... ..+....+..+...-..+.+++|+|+..+ ......+.... ..++ .-+|+||+|
T Consensus 239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~D 317 (456)
T 4dcu_A 239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH-EAGKAVVIVVNKWD 317 (456)
T ss_dssp EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHH-HTTCEEEEEEECGG
T ss_pred EECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHH-HcCCCEEEEEEChh
Confidence 114557999999995321 01111222222222335888999999654 22222222222 2233 457899999
Q ss_pred CC
Q 008282 334 GD 335 (571)
Q Consensus 334 ~~ 335 (571)
..
T Consensus 318 l~ 319 (456)
T 4dcu_A 318 AV 319 (456)
T ss_dssp GS
T ss_pred cC
Confidence 64
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.47 E-value=0.00019 Score=76.89 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=54.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+||||||+...|+ |.+..++. | .|+.. ....... +.+.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~------~~~~~~v~-~--~~g~T---------~d~~~~~-----------------~~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA------GERISIVE-D--TPGVT---------RDRIYSS-----------------AEWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE------EEECC-----------------------CEEEE-----------------CTTC
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeec-C--CCCCc---------cceEEEE-----------------EEEC
Confidence 68999999999999998875 33332221 1 11110 0000000 1135
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHH--HhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDV--KRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i--~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
+.++.|+||||....+..+..++... ...-.+|.+++|+|+..+. ........+. ..++ .-+|+||+|..
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~-~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY-RTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHT-TCCSCEEEEEECCCC-
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEEEEEECccCc
Confidence 67899999999753222222222111 1122468899999986541 1122222222 2232 45789999964
No 158
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.45 E-value=0.00095 Score=73.38 Aligned_cols=45 Identities=38% Similarity=0.548 Sum_probs=39.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
..+.+|+++|.+|+||||++.+||.+|...+.++.+++.|.+|..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 356899999999999999999999999888999989998876644
No 159
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.44 E-value=0.0001 Score=68.96 Aligned_cols=42 Identities=40% Similarity=0.675 Sum_probs=37.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++.+|+++|++|+||||++..|+..+...|.+|.+++.|..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 568999999999999999999999999999999999887553
No 160
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.44 E-value=0.00065 Score=70.23 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh--cCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~--~G~kVlLVd~D~~R 223 (571)
..|.+|+++|++||||||++..|+..+.. .+.+|.++..|.|-
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 46889999999999999999999888764 35689999999864
No 161
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=0.00038 Score=62.63 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---H---HHHHHhhh---hcCeeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---A---ALVTTFNI---EIGITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~---~~~~~f~~---~~~i~GVIlNKlD~~ 335 (571)
.+.+.|+||||.......... . .-..+.+++|+|....... . ..+..+.. ..+ .-+|+||+|..
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRL----S--ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHH----H--HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHH----h--cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 467899999997543221111 1 1124888999998654322 1 11222211 222 45899999953
Q ss_pred CC----hhHHHHHHHHhCCCe
Q 008282 336 SR----GGAALSVKEVSGKPI 352 (571)
Q Consensus 336 ~~----~g~~lsi~~~~g~PI 352 (571)
.. ...........+.|+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~ 143 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAF 143 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEE
T ss_pred cccccCHHHHHHHHHHhCCeE
Confidence 21 223344555566555
No 162
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.43 E-value=0.00046 Score=66.82 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~ 222 (571)
+..+++++|++|+||||++..|+.... ..+..+.+++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 356999999999999999999986555 66778888887643
No 163
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.43 E-value=0.00093 Score=59.65 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HH---HHHhhh--hcCeeEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---AL---VTTFNI--EIGITGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~---~~~f~~--~~~i~GVIlNKlD~~~ 336 (571)
.+.+.|+||||..... .+.. ... -..+.+++|+|........ .. +..... ..+ .-+|+||+|...
T Consensus 51 ~~~~~l~D~~G~~~~~-~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYA-AIRD---NYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEEECCC---CH-HHHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCcchhH-HHHH---HHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccc
Confidence 4689999999964321 1111 111 1357889999987553221 11 122221 222 358999999532
Q ss_pred ----ChhHHHHHHHHhCCCe
Q 008282 337 ----RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ----~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNVNY 143 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEE
T ss_pred cCccCHHHHHHHHHHcCCeE
Confidence 1233444555666655
No 164
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.42 E-value=0.00055 Score=70.86 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=48.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
..++++.|++|+||||++..+|.. .|.+|++++++.--+ +..+. .+..+.+....+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~--------------v~~~~----~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP--------------LSGYN----TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS--------------STTCB----CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh--------------hhhhh----cCHHHHHHHHHHHHh
Confidence 467889999999999999999876 678999998821111 11111 234444444444444
Q ss_pred hCCCcEEEEeCCCCCc
Q 008282 263 KKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~ 278 (571)
. +++||||.-..+.
T Consensus 182 ~--~~LLVIDsI~aL~ 195 (331)
T 2vhj_A 182 Q--HRVIVIDSLKNVI 195 (331)
T ss_dssp H--CSEEEEECCTTTC
T ss_pred h--CCEEEEecccccc
Confidence 3 3399999977664
No 165
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.42 E-value=0.0019 Score=57.56 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=45.4
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhh---hcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNI---EIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~---~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||...... +... . .-..+.+++|+|...... .......+.. ..++ .-+|+||+|...
T Consensus 50 ~~~~~l~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 50 PSVLEILDTAGTEQFAS-MRDL---Y--IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp EEEEEEEECCCTTCCHH-HHHH---H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEEEEEECCCchhhHH-HHHH---H--hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 45689999999654321 1111 1 123478899999876532 2222222211 1122 458899999532
Q ss_pred ---ChhHHHHHHHHhCCCeEEE
Q 008282 337 ---RGGAALSVKEVSGKPIKLV 355 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~fi 355 (571)
.......++...+.|+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEEE
T ss_pred ccCCHHHHHHHHHHhCCCEEEe
Confidence 1233445566677776433
No 166
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.42 E-value=0.00073 Score=63.41 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
+...|+++|.+||||||++..|.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45679999999999999997775
No 167
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.41 E-value=0.00058 Score=64.29 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh--cC-eeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE--IG-ITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~--~~-i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||........ .. ..-..+.+++|+|+...... ......+... .+ ..-+|+||+|....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTIT----TA--YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCC----HH--HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC
T ss_pred EEEEEEEeCCCcHHHHHHH----HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 3679999999964321110 11 11245888999998755322 1111222111 12 24588999996422
Q ss_pred --hhHHHHHHHHhCCCeEE
Q 008282 338 --GGAALSVKEVSGKPIKL 354 (571)
Q Consensus 338 --~g~~lsi~~~~g~PI~f 354 (571)
...+..++...+.|+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~ 160 (213)
T 3cph_A 142 VTADQGEALAKELGIPFIE 160 (213)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCEEEE
Confidence 23344566667777643
No 168
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.41 E-value=0.00093 Score=61.01 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=44.1
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHH---HHHhhhhcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAAL---VTTFNIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~---~~~f~~~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||...... +.. ... -..+.+++|+|...... .... +..+....++ .-+|+||+|...
T Consensus 65 ~~~~~l~Dt~G~~~~~~-~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAA-IRD---NYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp EEEEEEEECCCTTCCHH-HHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred EEEEEEEECCCCcccHH-HHH---HHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 46899999999754321 111 111 13588899999875432 2111 2222211122 358999999532
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~ 157 (187)
T 2a9k_A 139 RQVSVEEAKNRAEQWNVNY 157 (187)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred CccCHHHHHHHHHHcCCeE
Confidence 2233445555666654
No 169
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.40 E-value=0.00059 Score=62.69 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh---cCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE---IGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~---~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||...... .. ....-..+.+++|+|+....... .....+... .++ .-+|+||+|...
T Consensus 69 ~~~~~l~Dt~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRS-LT-----TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEEEEEECCSGGGHH-HH-----HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHHH-HH-----HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 46899999999743211 11 11122468899999986553322 222222211 122 458899999642
Q ss_pred ---ChhHHHHHHHHhCCCeE
Q 008282 337 ---RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~ 353 (571)
....+..++...+.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 143 RAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp CCSCHHHHHHHHHHHTCCEE
T ss_pred cccCHHHHHHHHHHcCCCEE
Confidence 22345556666777763
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.40 E-value=0.0012 Score=70.70 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=38.8
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCe--eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGI--TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i--~GVIlNKlD~~~ 336 (571)
.++.+.|+||||.-....... ..+..+|.+++|+|+..+ ....+... +....++ .-+++||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~~qt~~~l~-~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMA------TGASTCDLAIILVDARYGVQTQTRRHSY-IASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHH------HHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHHTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEEcCcCCc
Confidence 456799999999654322221 123356899999999654 12222221 1223344 357899999654
No 171
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.39 E-value=0.0012 Score=59.65 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..|.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCccHHHHHHHHh
Confidence 468999999999999997775
No 172
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=97.39 E-value=0.0013 Score=68.84 Aligned_cols=139 Identities=20% Similarity=0.243 Sum_probs=84.1
Q ss_pred CEEEEEEcC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 183 PTVILLAGL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 183 ~~VI~ivG~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+.++++|. .++||||++..|...+.++|+++.++..-. . ....+...|++.-...... -.......+..+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgq--t-----g~li~~~~gv~~D~~~~~~-~ag~~e~~i~~~ 240 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ--T-----GILIGADAGYVIDAVPADF-VSGVVEKAVLKL 240 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH--H-----HHHTTCSEECCGGGSBGGG-HHHHHHHHHHHH
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCc--e-----eeeeccCCCCCCCceecch-hhHHHHhhHHHh
Confidence 467888888 899999999999999999999998765321 1 1112222344322111010 011112222233
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCc--------------chHHHHHHHHHhhhhcCeeEE
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAM--------------TGQEAAALVTTFNIEIGITGA 327 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~--------------~gq~a~~~~~~f~~~~~i~GV 327 (571)
..+++|++||..+|.+........ ...+....+|+.++|.-++. .-++.+.....+. ...+.||
T Consensus 241 ~~~~~D~ivVEGqGgl~~P~~~~v-~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l~-~~~V~gi 318 (350)
T 2g0t_A 241 EKTGKEIVFVEGQGALRHPAYGQV-TLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLS-NAKVIGG 318 (350)
T ss_dssp HHTTCSEEEEECCSCTTCTTTHHH-HHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHSS-SCEEEEE
T ss_pred hhcCCCEEEEccCeeccccCchHH-HHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHhc-CCcEEEE
Confidence 247899999999998754222211 23345566788888876432 2244555556565 5778999
Q ss_pred E-Ecc
Q 008282 328 I-LTK 331 (571)
Q Consensus 328 I-lNK 331 (571)
+ +|-
T Consensus 319 ~~lN~ 323 (350)
T 2g0t_A 319 VSLNG 323 (350)
T ss_dssp ECSSC
T ss_pred EEcCc
Confidence 9 887
No 173
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.39 E-value=0.0017 Score=60.51 Aligned_cols=84 Identities=17% Similarity=0.064 Sum_probs=45.5
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHH---HHHhhhhcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AAL---VTTFNIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~---~~~f~~~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||...... +.. ... -..+.+++|+|....... ... +..+....++ .-+|+||+|...
T Consensus 61 ~~~~~l~Dt~G~~~~~~-~~~---~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAA-IRD---NYF--RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp EEEEEEEECCCTTCCHH-HHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred EEEEEEEcCCChhhhHH-HHH---HHH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 46799999999754322 111 111 135788999998755322 111 1222211122 358999999642
Q ss_pred ---ChhHHHHHHHHhCCCeEE
Q 008282 337 ---RGGAALSVKEVSGKPIKL 354 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~f 354 (571)
....+...+...+.|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 135 RQVSVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp CCSCHHHHHHHHHHHTCEEEE
T ss_pred ccccHHHHHHHHHHhCCeEEE
Confidence 123445556666766533
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.39 E-value=0.0006 Score=76.20 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.+.+.||||||....... +.... ...|.+++|+|+..+ |............++ .-+++||+|..
T Consensus 72 ~~~inliDTPGh~dF~~e----v~r~l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~ 138 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYE----VSRAL--AACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLP 138 (600)
T ss_dssp EEEEEEECCCCSGGGHHH----HHHHH--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred eEEEEEEECCCcHhHHHH----HHHHH--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence 478889999998654332 22222 235889999999765 322211112222222 45789999964
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.39 E-value=0.00088 Score=66.50 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+|+||||++..|.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999998876
No 176
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.38 E-value=0.00036 Score=62.78 Aligned_cols=82 Identities=13% Similarity=0.006 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhh---hcCeeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI---EIGITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~---~~~i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||....... . ... .-..+.+++|+|+...... ......+.. ..-..-+|.||+|....
T Consensus 54 ~~~~~~~Dt~G~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRAL-A---PMY--YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEEECCSGGGGGG-T---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEEEEcCCCchhhhcc-c---Hhh--CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 467999999997432111 1 111 1235788999998755322 112222221 11224467799996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 008282 338 ---GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI 352 (571)
...+...+...+.|+
T Consensus 128 ~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 128 EVMERDAKDYADSIHAIF 145 (170)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233444555556554
No 177
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.001 Score=60.66 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh--cCe-eEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE--IGI-TGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~--~~i-~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||...... .. .......+.+++|+|+....... .....+... .++ .-+|+||+|...
T Consensus 59 ~~~~~~~Dt~G~~~~~~----~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRS----VT--HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp EEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred EEEEEEEeCCCcHHHHH----HH--HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 46789999999642111 00 11122458889999987653321 112222211 222 458899999643
Q ss_pred --ChhHHHHHHHHhCCCeE
Q 008282 337 --RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI~ 353 (571)
....+..++...+.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 133 VVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp CSCHHHHHHHHHHHTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 22344556666777663
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.37 E-value=0.00068 Score=72.66 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=39.7
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---------HHHHHHHHhhhhcCe--eEEEEcc
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTK 331 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---------~a~~~~~~f~~~~~i--~GVIlNK 331 (571)
..++.+.|+||||...... .+ ...+...|.+++|+|+..+. ...+.. .+....++ .-+++||
T Consensus 81 ~~~~~~~iiDtpG~~~f~~----~~--~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~-~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVK----NM--ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp CSSCEEEECCCSSSTTHHH----HH--HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHHTTCTTCEEEEEC
T ss_pred cCCeEEEEEECCCcHHHHH----HH--HhhhhhcCEEEEEEECCCCccccccccchHHHHHH-HHHHHcCCCeEEEEEEc
Confidence 3578899999999754322 21 12234568999999997651 111111 12223343 3478999
Q ss_pred CCCCC
Q 008282 332 LDGDS 336 (571)
Q Consensus 332 lD~~~ 336 (571)
+|...
T Consensus 154 ~Dl~~ 158 (435)
T 1jny_A 154 MDLTE 158 (435)
T ss_dssp GGGSS
T ss_pred ccCCC
Confidence 99654
No 179
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00016 Score=65.83 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhhc--CeeEEEEccCCCCC---
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEI--GITGAILTKLDGDS--- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~~--~i~GVIlNKlD~~~--- 336 (571)
.+.+.|+||||........ . ...-..+.+++|+|+........ ....+.... ...-+|+||+|...
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 130 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTIT----S--TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV 130 (181)
T ss_dssp EEEEEEEEETTGGGCSSCC----G--GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCC
T ss_pred EEEEEEEcCCCchhhhhhH----H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcc
Confidence 3679999999953221000 0 01123578899999976543322 222222221 12358899999542
Q ss_pred -ChhHHHHHHHHhCCCeEE
Q 008282 337 -RGGAALSVKEVSGKPIKL 354 (571)
Q Consensus 337 -~~g~~lsi~~~~g~PI~f 354 (571)
....+...+...+.|+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (181)
T 3tw8_B 131 VETEDAYKFAGQMGIQLFE 149 (181)
T ss_dssp SCHHHHHHHHHHHTCCEEE
T ss_pred cCHHHHHHHHHHcCCeEEE
Confidence 223445566667777643
No 180
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.37 E-value=0.00099 Score=73.07 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCc-----------eecCC-CCCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-----------VYTAG-TEVK 249 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~-----------v~~~~-~~~~ 249 (571)
+..+++++|++|+||||++..++..+...|.+++++..+-.. +++.......|+. +.... ...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 346999999999999999999998888789888777754321 1222222222222 11000 1134
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEe
Q 008282 250 PSQIAKQGLEEAKKKNVDVVIVD 272 (571)
Q Consensus 250 p~~v~~~~l~~~~~~~~DvIIID 272 (571)
..+..+.++..+...+++++|+|
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCEEEEc
Confidence 55556666666666788999999
No 181
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=0.00048 Score=64.28 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=44.2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh--cCe-eEEEEccCCCCC-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE--IGI-TGAILTKLDGDS- 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~--~~i-~GVIlNKlD~~~- 336 (571)
..+.+.|+||||........ ... .-..+.+++|+|+...... ......+... -++ .-+|+||+|...
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~----~~~--~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLA----PMY--YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGT----HHH--HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCchhhHhhh----HHh--hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 45689999999964322111 111 1235888999998655322 2222222221 122 457889999642
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 144 ~~v~~~~~~~~~~~~~~~~ 162 (192)
T 2fg5_A 144 REVPLKDAKEYAESIGAIV 162 (192)
T ss_dssp CCSCHHHHHHHHHTTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 2233444555555554
No 182
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.34 E-value=0.001 Score=61.79 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH------HHHHHHhh---hhcCeeEEEEccCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA------AALVTTFN---IEIGITGAILTKLDG 334 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a------~~~~~~f~---~~~~i~GVIlNKlD~ 334 (571)
..+.+.|+||||...... +... . .-..+.+++|+|....... ...+..+. ...+ .-+|+||+|.
T Consensus 54 ~~~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl 126 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPA-MQRL---S--ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDE 126 (199)
T ss_dssp EEEEEEEEECCGGGSCHH-HHHH---H--HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTC
T ss_pred EEEEEEEEeCCChHHhHH-HHHH---h--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 356789999999654321 1111 1 1225888999998654321 11122221 1233 3589999996
Q ss_pred CCC---hhHHHHHHHHhCCCe
Q 008282 335 DSR---GGAALSVKEVSGKPI 352 (571)
Q Consensus 335 ~~~---~g~~lsi~~~~g~PI 352 (571)
... ...+...+...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~ 147 (199)
T 2gf0_A 127 TQREVDTREAQAVAQEWKCAF 147 (199)
T ss_dssp SSCSSCHHHHHHHHHHHTCEE
T ss_pred CccccCHHHHHHHHHHhCCeE
Confidence 432 233344555566554
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.34 E-value=0.0027 Score=61.00 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC--chhHHHHHHHhhhccCCceecCCCCC--CH------H
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY--RPAAIDQLVILGEQVGVPVYTAGTEV--KP------S 251 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~--Rp~a~dqL~~~~~~~gv~v~~~~~~~--~p------~ 251 (571)
++.|++++|++ .||||.|..+|.....+|++|+++....- ..+-.+-+. .+++.+...+... +. .
T Consensus 28 ~g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHH
Confidence 35567777655 99999999999999999999999976542 222222222 2235444433221 11 1
Q ss_pred HHHHHHHHHH----HhCCCcEEEEeCCC
Q 008282 252 QIAKQGLEEA----KKKNVDVVIVDTAG 275 (571)
Q Consensus 252 ~v~~~~l~~~----~~~~~DvIIIDTpG 275 (571)
..+..+++.+ ....||+||+|-.+
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 2233344333 34679999999874
No 184
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.33 E-value=0.0017 Score=59.49 Aligned_cols=86 Identities=10% Similarity=0.009 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHH---HhhhhcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVT---TFNIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~---~f~~~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||......... .. .-..+.+++|+|....... ..... .+....++ .-+|.||+|...
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMRE----QY--MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHH----HH--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred EEEEEEEECCCchhhHHHHH----HH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 34566799999643221111 11 1125889999998765322 11111 11111222 358899999532
Q ss_pred ---ChhHHHHHHHHhCCCeEEEe
Q 008282 337 ---RGGAALSVKEVSGKPIKLVG 356 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~fig 356 (571)
....+..++...+.|+..+.
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 139 RKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEEB
T ss_pred cCcCHHHHHHHHHHhCCeEEEec
Confidence 23445667777888764443
No 185
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.33 E-value=0.00077 Score=60.45 Aligned_cols=82 Identities=18% Similarity=0.075 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh--cCe-eEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE--IGI-TGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~--~~i-~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||........ ... .-..+.+++|+|+....... .....+... -++ .-+|.||+|...
T Consensus 54 ~~~~~~~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLA----PMY--YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEEECCSGGGGGGH----HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHhhhhh----HHh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 5679999999964322111 111 12358889999987653322 222222211 122 345669999532
Q ss_pred --ChhHHHHHHHHhCCCe
Q 008282 337 --RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (170)
T 1r2q_A 128 AVDFQEAQSYADDNSLLF 145 (170)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCeE
Confidence 1233444555555554
No 186
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.33 E-value=0.00031 Score=67.20 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=57.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe--ccCCchhHHHHHHHhhhccCCce--ecCCCCCCHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPV--YTAGTEVKPSQIAKQG 257 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd--~D~~Rp~a~dqL~~~~~~~gv~v--~~~~~~~~p~~v~~~~ 257 (571)
+..+++++|+.|+||||.+..++..+..+|++|+++. .|. |.+. . ......|+.+ ..... +. +.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~-~---~i~s~~g~~~~a~~~~~---~~----~i 74 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK-E---DVVSHMGEKEQAVAIKN---SR----EI 74 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------C---EEECTTSCEEECEEESS---ST----HH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH-H---HHHhhcCCceeeEeeCC---HH----HH
Confidence 3579999999999999999999999999999999986 343 2110 0 1222334322 11111 11 23
Q ss_pred HHHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHH
Q 008282 258 LEEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVK 291 (571)
Q Consensus 258 l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~ 291 (571)
++.+. .++|+|+||-+-.+. ...+..+..+.
T Consensus 75 ~~~~~-~~~dvViIDEaqfl~--~~~v~~l~~l~ 105 (191)
T 1xx6_A 75 LKYFE-EDTEVIAIDEVQFFD--DEIVEIVNKIA 105 (191)
T ss_dssp HHHCC-TTCSEEEECSGGGSC--THHHHHHHHHH
T ss_pred HHHHh-ccCCEEEEECCCCCC--HHHHHHHHHHH
Confidence 33332 469999999987763 23345554443
No 187
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.33 E-value=0.00056 Score=62.07 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=43.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhh--hcCe-eEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI--EIGI-TGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~--~~~i-~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||........ ... .-..+.+++|+|+...... ......+.. ..++ .-+|+||+|....
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLI----PSY--IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEEEEEEECCSGGGGGGS----HHH--HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHH----HHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 4679999999964321111 111 1245889999998654322 111222211 1122 4589999995321
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 008282 338 ---GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~ 353 (571)
.......+...+.|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 136 QVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp CSCHHHHHHHHHHHTCEEE
T ss_pred cCCHHHHHHHHHHcCCeEE
Confidence 2333445556666653
No 188
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.33 E-value=0.0012 Score=70.77 Aligned_cols=114 Identities=24% Similarity=0.257 Sum_probs=57.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|.+||||||+...|. |.+..+++ | .|+. ... . .+. .+.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~-~--~~g~-------T~d--~-~~~----------------~~~~~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVE-D--EEGV-------TRD--P-VQD----------------TVEWY 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH------C------------------------C--C-SEE----------------EEEET
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCCceec-C--CCCC-------ccc--e-eeE----------------EEEEC
Confidence 68999999999999998886 44433222 1 1111 000 0 000 00124
Q ss_pred CCcEEEEeCCCCCcc-----cHHHHHHHHHHHhhhCCceEEEEEeCcchH--HHHHHHHHhhhhcCeeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRVLNPTEVLLVVDAMTGQ--EAAALVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~~~pd~vlLVvda~~gq--~a~~~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
+..+.|+||||.... ...+.... ....-.+|.+++|+|+..+. ............-...-+|+||+|..
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~--~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVT--LNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHH--HHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CeEEEEEECCCccccccchHHHHHHHHH--HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 567899999997532 11221111 11223468899999986541 11112222221111245889999964
No 189
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.32 E-value=0.00061 Score=72.17 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=36.9
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhh-hcCeeEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI-EIGITGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~-~~~i~GVIlNKlD~~~ 336 (571)
..+.|+||||.-....... ..+..+|.+++|+|+..+ ....+....... .....-+++||+|...
T Consensus 75 ~~~~iiDtPGh~~~~~~~~------~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATML------SGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEEECCCCGGGHHHHH------HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ceEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 6799999999643222221 122346899999999643 122222222211 1222457899999754
No 190
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.31 E-value=0.00021 Score=65.10 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHHHHHHhhhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAALVTTFNIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~~~~~f~~~~~i~GVIlNKlD~~~ 336 (571)
.+..+.|+||||........ ....-..+.+++|+|+..+ ......+......-...-+|+||+|...
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMR------ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSC------CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CCceEEEEECCCCHHHHHHH------HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 45678999999964321100 0111235778999997542 2333333333322122468899999654
No 191
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.31 E-value=0.00047 Score=61.89 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhhh---cC-eeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE---IG-ITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~~---~~-i~GVIlNKlD~~~ 336 (571)
.++.+.|+||||...... +. .. ..-..+.+++|+|+...+ ........+... .+ ..-+|.||+|...
T Consensus 42 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRP-LW---RH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SSCEEEEEECCCCGGGHH-HH---HH--HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEEcCCChhhHH-HH---HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 467899999999753211 11 11 123468899999986553 222222222211 12 2458899999654
No 192
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.30 E-value=0.00054 Score=76.60 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccCCCCC-Ch-h
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKLDGDS-RG-G 339 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKlD~~~-~~-g 339 (571)
++.+.||||||....... +..... ..|.+++|+|+..+ +............++ .-+|+||+|... .. .
T Consensus 70 ~~~l~liDTPGh~dF~~e----v~~~l~--~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYE----VSRSLA--ACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADPER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHHH----HHHHHH--HCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCchHHHHH----HHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCcccccHHH
Confidence 478899999997644332 222222 24889999999654 332222222222232 457899999643 22 2
Q ss_pred HHHHHHHHhCCC
Q 008282 340 AALSVKEVSGKP 351 (571)
Q Consensus 340 ~~lsi~~~~g~P 351 (571)
....+...++.+
T Consensus 143 v~~ei~~~lg~~ 154 (599)
T 3cb4_D 143 VAEEIEDIVGID 154 (599)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHhCCC
Confidence 234455555653
No 193
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00033 Score=65.52 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH------HHHHhhhhcCeeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA------LVTTFNIEIGITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~------~~~~f~~~~~i~GVIlNKlD~~ 335 (571)
.+.+.|+||||....... . .... -..+.+++|+|+........ .+..+...-...-+|+||+|..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~-~---~~~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSI-T---SAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHH-H---HHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHH-H---HHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 467999999996532211 1 1111 23588999999876533221 1122211112245889999954
No 194
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.28 E-value=0.00036 Score=66.10 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468899999999999997775
No 195
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.28 E-value=0.00044 Score=62.32 Aligned_cols=83 Identities=22% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh---hcCeeEEEEccCCCCC-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS- 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~---~~~i~GVIlNKlD~~~- 336 (571)
..+.+.|+||||..... .+.. ...-..+.+++|+|......... ....+.. .-...-+|+||+|...
T Consensus 53 ~~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFH-----ALGP-IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp CEEEEEEEECCCC------------C-CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred EEEEEEEEECCCcHhhh-----hhHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 34678999999953211 1100 01123578899999876532211 1112211 1122358899999642
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (170)
T 1z08_A 127 RHVSIQEAESYAESVGAKH 145 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 2234455556666555
No 196
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.27 E-value=0.00065 Score=62.30 Aligned_cols=84 Identities=15% Similarity=0.040 Sum_probs=44.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHh---hhhcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTF---NIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f---~~~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||........ .... -..+.+++|+|....... ......+ ....++ .-+|+||+|...
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMR----DQYM--RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEEEEEEECCCC---CTTH----HHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred EEEEEEEECCCcHHHHHHH----HHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 4567889999964322111 1111 125788999998755322 2222222 211222 357889999643
Q ss_pred --ChhHHHHHHHHhCCCeEE
Q 008282 337 --RGGAALSVKEVSGKPIKL 354 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI~f 354 (571)
....+..++...+.|+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~ 144 (189)
T 4dsu_A 125 TVDTKQAQDLARSYGIPFIE 144 (189)
T ss_dssp SSCHHHHHHHHHHHTCCEEE
T ss_pred ccCHHHHHHHHHHcCCeEEE
Confidence 234455667777877643
No 197
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.27 E-value=0.00035 Score=63.87 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=33.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
..+++++|++|+||||++..++..+...|+++.++++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 357899999999999999999998888888888887653
No 198
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.27 E-value=0.00025 Score=66.83 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=44.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh---hcCeeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~---~~~i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||....... . ....-..+.+++|+|+........ ....+.. .-...-+|+||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~~~~-~-----~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTI-T-----SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EEEEEEECCTTTTTTTCC-C-----GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEEeCCChHHHHHH-H-----HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 468999999996432110 0 011223578899999876533221 1222221 11224588999996431
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 008282 338 ---GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~ 353 (571)
...+..++...+.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 130 VVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp CSCHHHHHHHHHHTTCCEE
T ss_pred ccCHHHHHHHHHHcCCeEE
Confidence 2334455566676663
No 199
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.27 E-value=0.0015 Score=61.65 Aligned_cols=82 Identities=18% Similarity=0.080 Sum_probs=44.6
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh--cCe-eEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE--IGI-TGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~--~~i-~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||...... +. ... .-..+.+++|+|.+...... .....+... .++ .-+|.||+|...
T Consensus 77 ~~~l~i~Dt~G~~~~~~-~~---~~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 150 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRT-IT---QSY--YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150 (201)
T ss_dssp EEEEEEECCTTCGGGHH-HH---HHH--HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCcHhHHH-HH---HHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccc
Confidence 46899999999743211 11 111 22458899999987653321 112222211 122 357889999643
Q ss_pred --ChhHHHHHHHHhCC-Ce
Q 008282 337 --RGGAALSVKEVSGK-PI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~-PI 352 (571)
....+..++...+. ++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 151 EVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp CSCHHHHHHHHHHTTCSEE
T ss_pred ccCHHHHHHHHHHcCCCEE
Confidence 22334555566665 44
No 200
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.27 E-value=0.00033 Score=65.17 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
.+..|+|+|.+||||||++..|.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 44679999999999999997774
No 201
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.27 E-value=0.014 Score=69.57 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=64.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|..++||||++..|.....+.|.... . .|. ..+.+. .-...|+.+..... .+.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f-~---~~a--~lD~~~-~ErerGITIdva~v-------------~f~ 355 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA-R---AFD--QIDNAP-EEKARGITINTSHV-------------EYD 355 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------------CCSCE-------------EEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhcccccccc-c---ccc--cccccc-ccccCceeEEEEEE-------------EEc
Confidence 457899999999999999999876655553210 0 000 001100 00111222111000 011
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCee--EEEEccCCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGIT--GAILTKLDGDS 336 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~--GVIlNKlD~~~ 336 (571)
..++.+.||||||... ....+ +..+...|.++||+|+..+ |. .+.+.... ..++. -|++||+|...
T Consensus 356 ~~~~kI~IIDTPGHed----F~~~m--i~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~-~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 356 TPTRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVAATDGPMPQT-REHILLGR-QVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp CSSCEEEEEECCCHHH----HHHHH--HHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHH-HHTCSCEEEEEECCTTCC
T ss_pred CCCEEEEEEECCChHH----HHHHH--HHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHH-HcCCCeEEEEEeeccccc
Confidence 2467899999999642 22222 1223357899999999654 22 12221111 23443 47899999754
No 202
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.0005 Score=63.57 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=44.8
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh---cCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~---~~i-~GVIlNKlD~~~ 336 (571)
..+.+.|+||||......... .. .-..+.+++|+|+...... ......+... .++ .-+|+||+|...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTP----SY--YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHH----HH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred eEEEEEEEeCCCchhhhhhhH----HH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 356899999999643221111 11 1245888999999765332 2222223221 122 358899999643
Q ss_pred C---hhHHHHHHHHhCCCe
Q 008282 337 R---GGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ~---~g~~lsi~~~~g~PI 352 (571)
. ...+...+...+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLF 154 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 2 233444555555554
No 203
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.0021 Score=60.72 Aligned_cols=37 Identities=32% Similarity=0.663 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
+.+|+|+|++||||||++..|+..+ | ..+++.|.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 5689999999999999999998776 4 34678887754
No 204
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.0012 Score=62.63 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhh--hcCe-eEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI--EIGI-TGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~--~~~i-~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||.-.. ..+. .......+.+++|+|.+...... .....+.. ..++ .-+|.||+|....
T Consensus 74 ~~~l~l~Dt~G~~~~-----~~~~-~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 147 (201)
T 2ew1_A 74 KVKLQIWDTAGQERF-----RSIT-QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147 (201)
T ss_dssp EEEEEEEEECCSGGG-----HHHH-GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHH-----HHHH-HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 467899999996432 1110 11122468889999987653321 11122211 1122 3578899996421
Q ss_pred ---hhHHHHHHHHhCCCe
Q 008282 338 ---GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI 352 (571)
...+...+...+.|+
T Consensus 148 ~v~~~~~~~~~~~~~~~~ 165 (201)
T 2ew1_A 148 EVSQQRAEEFSEAQDMYY 165 (201)
T ss_dssp SSCHHHHHHHHHHHTCCE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 233344555666665
No 205
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.24 E-value=0.0016 Score=80.13 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=65.5
Q ss_pred HHHHHHhc-CCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce
Q 008282 163 DELVKLMG-GEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (571)
Q Consensus 163 ~eL~~llg-~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v 241 (571)
.+|.++++ +... ++.++++.|++|+||||++.++|..++++|.+|++++++.-.. |+. +...|++.
T Consensus 718 ~eLD~lLg~GGl~-------~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~----ql~--A~~lGvd~ 784 (1706)
T 3cmw_A 718 LSLDIALGAGGLP-------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDI 784 (1706)
T ss_dssp HHHHHHTSSSSEE-------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HHH--HHHTTCCG
T ss_pred HHHHHHhccCCcC-------CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH----HHH--HHHcCCCh
Confidence 35666665 3322 3569999999999999999999999999999999999874322 221 44445432
Q ss_pred ---ecCCCCCCHHHHHHHHHHH-HHhCCCcEEEEeCCCCCc
Q 008282 242 ---YTAGTEVKPSQIAKQGLEE-AKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 242 ---~~~~~~~~p~~v~~~~l~~-~~~~~~DvIIIDTpG~l~ 278 (571)
+... ..+..++ ...++. ....++++||||.-..+.
T Consensus 785 ~~L~i~~-~~~leei-~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 DNLLCSQ-PDTGEQA-LEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp GGCEEEC-CSSHHHH-HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred hheEEec-CCcHHHH-HHHHHHHHHccCCCEEEEechhhhc
Confidence 1111 1223333 233332 224689999999977665
No 206
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.24 E-value=0.00046 Score=64.06 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=45.7
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh---cCeeEEEEccCCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGITGAILTKLDGDSR 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~---~~i~GVIlNKlD~~~~ 337 (571)
..+.+.|+||||........ ....-..+.+++|+|+...... ......+... -...-+|+||+|....
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTIT------TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSG------GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred eEEEEEEEeCCCcHHHhhhH------HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 35689999999964321100 0112245888999998655322 1222222211 1224588999996431
Q ss_pred ----hhHHHHHHHHhCCCeE
Q 008282 338 ----GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ----~g~~lsi~~~~g~PI~ 353 (571)
...+..++...+.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 143 RVVPAEDGRRLADDLGFEFF 162 (189)
T ss_dssp CCSCHHHHHHHHHHHTCEEE
T ss_pred cCCCHHHHHHHHHHcCCeEE
Confidence 2344556666776553
No 207
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.23 E-value=0.0006 Score=63.70 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHh-hhCCceEEEEEeCcchHHH---HHHHHHhhhh-----cCe-eEEEEccCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKR-VLNPTEVLLVVDAMTGQEA---AALVTTFNIE-----IGI-TGAILTKLDG 334 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~-~~~pd~vlLVvda~~gq~a---~~~~~~f~~~-----~~i-~GVIlNKlD~ 334 (571)
.+.+.|+||||.... ..+ ... .-..+.+++|+|++..... ......+... .++ .-+|+||+|.
T Consensus 72 ~~~~~l~Dt~G~~~~-----~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 72 SVELFLLDTAGSDLY-----KEQ--ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp EEEEEEEETTTTHHH-----HHH--HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred EEEEEEEECCCcHHH-----HHH--HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECccc
Confidence 567999999996321 111 111 1235788999999765432 2222222221 122 4589999996
Q ss_pred CC-C----hhHHHHHHHHhCCCeE
Q 008282 335 DS-R----GGAALSVKEVSGKPIK 353 (571)
Q Consensus 335 ~~-~----~g~~lsi~~~~g~PI~ 353 (571)
.. . ...+..++...+.++.
T Consensus 145 ~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 145 PPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp -----CCCHHHHHHHHHHTTCEEE
T ss_pred chhhccCCHHHHHHHHHHcCCEEE
Confidence 43 1 2344556666676553
No 208
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.23 E-value=0.00054 Score=64.23 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhh---hcCeeEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNI---EIGITGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~---~~~i~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||...... +. . ...-..+.+++|+|+....... .....+.. .-...-+|+||+|....
T Consensus 56 ~~~~~l~Dt~G~~~~~~-~~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRT-IT---T--AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEEECCSGGGHH-HH---H--TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred EEEEEEEECCCchhhcc-hH---H--HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 46789999999743211 11 1 1122458889999987653321 11222221 11224588999996432
Q ss_pred ---hhHHHHHHHHhCCCeE
Q 008282 338 ---GGAALSVKEVSGKPIK 353 (571)
Q Consensus 338 ---~g~~lsi~~~~g~PI~ 353 (571)
...+..++...+.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 130 VVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp CSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHCCCeEE
Confidence 2344556666777653
No 209
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.23 E-value=0.0015 Score=63.64 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.+|+||++.|++||||||.|..||..| |... +-+.|.+|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~---g~~h-IstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF---HFNH-LSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH---CCEE-ECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH---CCce-EcHHHHHHH
Confidence 468999999999999999999998766 4433 445677764
No 210
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.22 E-value=0.0005 Score=62.59 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999997775
No 211
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.22 E-value=0.0011 Score=82.58 Aligned_cols=87 Identities=21% Similarity=0.378 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC-CchhHHHHHHHhhhccCCceecCC-CCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV-YRPAAIDQLVILGEQVGVPVYTAG-TEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~-~Rp~a~dqL~~~~~~~gv~v~~~~-~~~~p~~v~~~~l~ 259 (571)
+++++.++|++|+||||++..+|....++|.+|++++++- +.+.. +...|+++-... ...++.+.+...+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-------a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-------ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-------HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-------HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4679999999999999999999999889999999999863 23332 223343211100 01233343323333
Q ss_pred -HHHhCCCcEEEEeCCC
Q 008282 260 -EAKKKNVDVVIVDTAG 275 (571)
Q Consensus 260 -~~~~~~~DvIIIDTpG 275 (571)
.++...+|+||||.-.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 3344689999999973
No 212
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.22 E-value=0.00053 Score=72.15 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
.|+++|..++||||++..|. ++| ++.| +..+.. ..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----~~g-----iTi~------------------~~~~~~-----------------~~~ 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----KKG-----TSSD------------------ITMYNN-----------------DKE 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----EEE-----EESS------------------SEEEEE-----------------CSS
T ss_pred EEEEECCCCCCHHHHHHHHH----hCC-----EEEE------------------eeEEEE-----------------ecC
Confidence 79999999999999998775 111 1111 111110 124
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch-H-HHHHHHHHh-hhhcCeeEEEEc-cCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG-Q-EAAALVTTF-NIEIGITGAILT-KLDG 334 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g-q-~a~~~~~~f-~~~~~i~GVIlN-KlD~ 334 (571)
++.+.|+||||....-..+... +...|.+++|+| ..+ + ...+..... ...++..-+++| |+|.
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~------~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITA------LNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHH------HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CeEEEEEECCChHHHHHHHHHH------HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 6789999999976432222221 234689999999 544 1 122222111 112333357888 9998
No 213
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.20 E-value=0.0013 Score=60.89 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=44.4
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh---cCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~---~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||.......+ .... .-..+.+++|+|+...... ......+... .++ .-+|+||+|...
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~---~~~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSM---VQHY--YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEEEEEEECCCSHHHHTTT---HHHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhh---hHHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4689999999953211001 1111 1245889999998754322 1112222111 122 358899999642
Q ss_pred ---ChhHHHHHHHHhCCCeE
Q 008282 337 ---RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~ 353 (571)
....+..++...+.++.
T Consensus 143 ~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 143 IQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp CCSCHHHHHHHHHHTTCCEE
T ss_pred ceeCHHHHHHHHHHcCCEEE
Confidence 22334455566676663
No 214
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.20 E-value=0.0023 Score=57.58 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhhc---Ce-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIEI---GI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~~---~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||.......+... . .-..+.+++|+|....+... .....+.... ++ .-+|.||+|...
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDH---C--LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124 (169)
T ss_dssp EEEEEEECCCCC--------CH---H--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred EEEEEEEECCCccccchhhhhh---h--hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence 5678999999975321111111 0 11258889999987653222 2222222111 22 357899999542
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (169)
T 3q85_A 125 REVSLEEGRHLAGTLSCKH 143 (169)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHcCCcE
Confidence 2233445566666655
No 215
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.19 E-value=0.0043 Score=68.08 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhhcCeeEEEEccCCCCCChh-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIEIGITGAILTKLDGDSRGG- 339 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~~~i~GVIlNKlD~~~~~g- 339 (571)
..+.+.|+||||.-.... +. ..+ .-.++.+++|+|+...++... .+..+....+ .-+|.||+|......
T Consensus 96 ~~~~~~i~Dt~G~e~~~~-~~---~~~--l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v 168 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHA-SH---QFF--MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNI 168 (535)
T ss_dssp TTCEEEEECCCSCCTTTT-TC---HHH--HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCC
T ss_pred ceEEEEEEECCcHHHHHH-HH---HHH--ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCC-EEEEEECCCccccccc
Confidence 468899999999532211 00 011 123578899999976544333 3333333334 348999999643222
Q ss_pred ---HHHHHHHHhCCCeEEEe--cCCCCCC
Q 008282 340 ---AALSVKEVSGKPIKLVG--RGERMED 363 (571)
Q Consensus 340 ---~~lsi~~~~g~PI~fig--~Ge~v~d 363 (571)
.+.......+.|+..+. .|+.+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 169 EQKKINERFPAIENRFHRISCKNGDGVES 197 (535)
T ss_dssp CHHHHHHHCGGGTTCEEECCC-----CTT
T ss_pred CHHHHHHHHHhcCCceEEEecCcccCHHH
Confidence 23333445567775443 3444444
No 216
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.00037 Score=64.90 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=44.5
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhh---hcCeeEEEEccCCCCC-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNI---EIGITGAILTKLDGDS- 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~---~~~i~GVIlNKlD~~~- 336 (571)
..+.+.|+||||..... ...... .-..+.+++|+|....... ......+.. .-...-+|.||+|...
T Consensus 70 ~~~~~~i~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYR----TITTAY--YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp TTEEEEEECHHHHHHCH----HHHHHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEEEEeCCChHHHH----HHHHHH--HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45779999999943211 111111 2245788999998755322 111222221 1122457889999532
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 144 RVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred cccCHHHHHHHHHHcCCeE
Confidence 2233445666677765
No 217
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.17 E-value=0.0036 Score=57.39 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
.|+++|.+||||||++..|.
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998775
No 218
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.17 E-value=0.0056 Score=70.13 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCCccc--------HHHHHHH-HHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCeeEEEEccC
Q 008282 265 NVDVVIVDTAGRLQID--------KAMMDEL-KDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGITGAILTKL 332 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d--------~~l~~eL-~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i~GVIlNKl 332 (571)
..+++||||||..... .....++ ..... -..+-+++|+|+..+ ++....+..+...-...-+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence 4579999999987521 1222222 11211 234677888998543 344345555543322356899999
Q ss_pred CCCCChh
Q 008282 333 DGDSRGG 339 (571)
Q Consensus 333 D~~~~~g 339 (571)
|......
T Consensus 228 Dlv~~~~ 234 (772)
T 3zvr_A 228 DLMDEGT 234 (772)
T ss_dssp TSSCTTC
T ss_pred ccCCcch
Confidence 9765443
No 219
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.17 E-value=0.0016 Score=59.04 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999997776
No 220
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.16 E-value=0.0023 Score=57.25 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhh--cCe-eEEEEccCCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE--IGI-TGAILTKLDGDSR- 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~--~~i-~GVIlNKlD~~~~- 337 (571)
.+.+.|+||||....... . ... .-..+.+++|+|+........ ....+... .++ .-+|+||+|....
T Consensus 51 ~~~~~~~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASL-A---PXY--YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGG-H---HHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred EEEEEEEECCCChhhhhh-h---hhh--hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 467999999996432211 1 111 124588899999876533222 12222221 122 3478899995321
Q ss_pred ------hhHHHHHHHHhCCCe
Q 008282 338 ------GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 ------~g~~lsi~~~~g~PI 352 (571)
.......+...+.++
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGLLF 145 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTCEE
T ss_pred cccCCCHHHHHHHHHHcCCEE
Confidence 123344555566655
No 221
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.16 E-value=0.00053 Score=63.75 Aligned_cols=83 Identities=20% Similarity=0.081 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh--cCe-eEEEEccCCCCC-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE--IGI-TGAILTKLDGDS- 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~--~~i-~GVIlNKlD~~~- 336 (571)
..+.+.|+||||....... . ... .-..+.+++|+|+...... ......+... .++ .-+|+||+|...
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~-~---~~~--~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAI-T---SAY--YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEEEEEESCCCTTCTT-H---HHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEEeCCCchhhhhh-h---HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 3567899999997532211 1 111 1245788999998765332 1222222211 122 458899999542
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~ 164 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLF 164 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred cccCHHHHHHHHHHcCCEE
Confidence 1233444555556655
No 222
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.15 E-value=0.0011 Score=61.46 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=59.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
....|+++|.+||||||+...|. +..+. .+.| ..|......
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~------~~~~~-----~~~~-----------t~g~~~~~~----------------- 55 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLA------SEDIS-----HITP-----------TQGFNIKSV----------------- 55 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------CSCCE-----EEEE-----------ETTEEEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHh------cCCCC-----cccC-----------cCCeEEEEE-----------------
Confidence 35679999999999999997775 22211 0111 111111100
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhhh---cC-eeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNIE---IG-ITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~~---~~-i~GVIlNKlD~ 334 (571)
..+++.+.|+||||...... .. .. .....+.+++|+|++.... .......+... .+ ..-+|.||+|.
T Consensus 56 ~~~~~~l~i~Dt~G~~~~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 56 QSQGFKLNVWDIGGQRKIRP-YW---RS--YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp EETTEEEEEEECSSCGGGHH-HH---HH--HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHHHHH-HH---HH--HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 11357899999999753211 11 11 1224688999999865432 22222222111 12 24578999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 130 ~~ 131 (181)
T 1fzq_A 130 LT 131 (181)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 223
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.15 E-value=0.0013 Score=61.21 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh--cCe-eEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE--IGI-TGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~--~~i-~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||........ .. ..-..+.+++|+|+....... .....+... .++ .-+|+||+|...
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 142 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSIT----RS--YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142 (191)
T ss_dssp EEEEEEECCTTGGGTSCCC----HH--HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCchhhhhhH----HH--HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc
Confidence 4678999999964321100 01 112358889999987653222 212222211 122 357889999642
Q ss_pred --ChhHHHHHHHHhCCCeE
Q 008282 337 --RGGAALSVKEVSGKPIK 353 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI~ 353 (571)
....+..++...+.++.
T Consensus 143 ~v~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 143 DVKREEGEAFAREHGLIFM 161 (191)
T ss_dssp CSCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHHHcCCEEE
Confidence 22344555666676653
No 224
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.15 E-value=0.0014 Score=60.70 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=58.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|.+||||||++..|.. +..+ .. .| ..+...... .
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~-----~~~~---~~---~~-----------t~~~~~~~~-----------------~ 56 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM-----NEVV---HT---SP-----------TIGSNVEEI-----------------V 56 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT-----TSCE---EE---EC-----------CSCSSCEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHhc-----CCCC---cC---cC-----------CCccceEEE-----------------E
Confidence 45799999999999999977751 2211 10 01 011111100 0
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhhh---cCe-eEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE---IGI-TGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~~---~~i-~GVIlNKlD~~ 335 (571)
.+++.+.|+||||........ ... .-..+.+++|+|++..+ ........+... .++ .-+|+||+|..
T Consensus 57 ~~~~~~~i~Dt~G~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 57 INNTRFLMWDIGGQESLRSSW----NTY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp ETTEEEEEEECCC----CGGG----HHH--HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHhHHHHH----HHH--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 145789999999974321111 111 12468899999986542 222222222211 222 45889999965
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 131 ~ 131 (187)
T 1zj6_A 131 E 131 (187)
T ss_dssp T
T ss_pred C
Confidence 3
No 225
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.15 E-value=0.0013 Score=60.20 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhh--cC-eeEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE--IG-ITGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~--~~-i~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||.... ..+. ....-..+.+++|+|+........ ....+... .+ ..-+|.||+|...
T Consensus 56 ~~~~~l~Dt~G~~~~-----~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 56 RIKLQIWDTAGQERF-----RTIT-TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEEEEEEEC--------------C-CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred EEEEEEEcCCCChhh-----hhhH-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 467999999996321 1110 011124578899999876533222 22222221 12 2458899999643
Q ss_pred --ChhHHHHHHHHhCCCe
Q 008282 337 --RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 130 ~v~~~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 130 QVSKERGEKLALDYGIKF 147 (183)
T ss_dssp CSCHHHHHHHHHHHTCEE
T ss_pred cCCHHHHHHHHHHcCCeE
Confidence 1234455666677665
No 226
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.15 E-value=0.0022 Score=57.28 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..|.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999997775
No 227
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.14 E-value=0.00075 Score=75.90 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLV 231 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~ 231 (571)
+.+|.||+|+|||+|++.+...+.++|.+|++++ +...|++.+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a---~TN~AvD~i~ 250 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA---PSNIAVDNLV 250 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE---SSHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc---CchHHHHHHH
Confidence 6788899999999999999999999999997766 3445555543
No 228
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.14 E-value=0.0011 Score=59.51 Aligned_cols=83 Identities=7% Similarity=-0.079 Sum_probs=38.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh---cCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE---IGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~---~~i-~GVIlNKlD~~~ 336 (571)
..+.+.++||||...... +.. .. ....+.+++|+|........ .....+... .++ .-+|.||+|...
T Consensus 47 ~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRW-LPG---HC--MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEEEECCCCccchh-hhh---hh--hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 356789999999643211 111 11 12357889999987553222 111222111 122 357889999542
Q ss_pred C----hhHHHHHHHHhCCCe
Q 008282 337 R----GGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ~----~g~~lsi~~~~g~PI 352 (571)
. .......+...+.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKF 140 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEE
T ss_pred ccccCHHHHHHHHHHhCCcE
Confidence 1 223344555566655
No 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.14 E-value=0.001 Score=61.28 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||+...|+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999997775
No 230
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.14 E-value=0.00021 Score=64.55 Aligned_cols=109 Identities=26% Similarity=0.268 Sum_probs=59.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
+..|+++|.+||||||++..|.. +. . ..+.|. .+...... .
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~-----~~-~-----~~~~~t-----------~~~~~~~~-----------------~ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV-----GE-V-----VTTIPT-----------IGFNVETV-----------------T 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-----SS-C-----CCCCCC-----------SSEEEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHhc-----CC-C-----CCcCCc-----------CccceEEE-----------------E
Confidence 45789999999999999977742 11 0 011110 11111100 1
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhh---cCe-eEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIE---IGI-TGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~---~~i-~GVIlNKlD~~ 335 (571)
..++.+.|+||||....... . . ...-..+.+++|+|+... .........+... .++ .-+|+||+|..
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~-~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 48 YKNLKFQVWDLGGLTSIRPY-W---R--CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp ETTEEEEEEEECCCGGGGGG-G---G--GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCChhhhHH-H---H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 13578999999997432110 0 0 011246888999998654 2222222222211 122 45889999965
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 122 ~ 122 (171)
T 1upt_A 122 Q 122 (171)
T ss_dssp T
T ss_pred C
Confidence 4
No 231
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.13 E-value=0.00048 Score=76.24 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+|+|.+|+||||++..|.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999998876
No 232
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.11 E-value=0.00056 Score=65.11 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++.+|+++|++|+||||++..|+..+...|..|.+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 468999999999999999999999998888899999888764
No 233
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.11 E-value=0.00082 Score=63.30 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3568899999999999998775
No 234
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.10 E-value=0.00043 Score=64.18 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+|+|+|++||||||++..|+..|...|+.+.+++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4789999999999999999999999889988888644
No 235
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.10 E-value=0.00069 Score=62.95 Aligned_cols=110 Identities=22% Similarity=0.222 Sum_probs=59.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
...|+++|.+||||||++..|.. .... +.+.+ ..+..+.. +.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~----~~~~------~~~~~-----------t~~~~~~~-----------------~~ 63 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS----GQFN------EDMIP-----------TVGFNMRK-----------------IT 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH----SCCC------CSCCC-----------CCSEEEEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHHc----CCCC------CccCC-----------CCceeEEE-----------------EE
Confidence 45689999999999999977752 1100 01111 11111110 01
Q ss_pred hCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhhh---cCe-eEEEEccCCCC
Q 008282 263 KKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE---IGI-TGAILTKLDGD 335 (571)
Q Consensus 263 ~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~~---~~i-~GVIlNKlD~~ 335 (571)
..++.+.|+||||.... ....... ....+.+++|+|++... ........+... .++ .-+|+||+|..
T Consensus 64 ~~~~~~~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRF----RSMWERY--CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp ETTEEEEEEEECCSHHH----HTTHHHH--HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred eCCEEEEEEECCCCHhH----HHHHHHH--HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 24678999999996321 1111111 12468899999986542 222222222111 222 45889999965
Q ss_pred C
Q 008282 336 S 336 (571)
Q Consensus 336 ~ 336 (571)
.
T Consensus 138 ~ 138 (188)
T 1zd9_A 138 G 138 (188)
T ss_dssp T
T ss_pred c
Confidence 4
No 236
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.09 E-value=0.00044 Score=63.78 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+...|+++|.+||||||++..|.. .+.. .+.+ ..+..+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~-----~~~~-----------t~~~~~~~~----------------- 60 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM------NEVV-----HTSP-----------TIGSNVEEI----------------- 60 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT------TSCE-----EEEC-----------CSSSSCEEE-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCC-----ccCC-----------cCceeeEEE-----------------
Confidence 356789999999999999977752 1211 0000 111111100
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhh---hcCe-eEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNI---EIGI-TGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~---~~~i-~GVIlNKlD~ 334 (571)
..+++.+.|+||||........ . ...-..+.+++|+|+... +........+.. ..++ .-+|+||+|.
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~----~--~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSSW----N--TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCGG----G--GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHH----H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 1145789999999974321100 0 112245888999998654 222222222221 1222 4578999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 135 ~~ 136 (181)
T 2h17_A 135 KE 136 (181)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 237
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.00043 Score=65.67 Aligned_cols=43 Identities=37% Similarity=0.674 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
++.+|+++|++|+||||++..||..+...|.-+.+++.|..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 5689999999999999999999999987787777888775543
No 238
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.08 E-value=0.0018 Score=80.82 Aligned_cols=89 Identities=19% Similarity=0.356 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCce---ecCCCCCCHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV---YTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v---~~~~~~~~p~~v~~~~l 258 (571)
++.++.+.|++|+||||++.++|..+++.|.+|++++++.-... + ++...|++. +... ..+..++ ...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~----~--~a~~lGvd~~~L~I~~-~~~~e~i-l~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP----I--YARKLGVDIDNLLCSQ-PDTGEQA-LEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH----H--HHHHTTCCTTTCEEEC-CSSHHHH-HHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH----H--HHHHcCCCHHHeEEeC-CCCHHHH-HHHH
Confidence 45799999999999999999999999999999999998753221 1 133444431 1111 1233333 2333
Q ss_pred HHH-HhCCCcEEEEeCCCCCc
Q 008282 259 EEA-KKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 259 ~~~-~~~~~DvIIIDTpG~l~ 278 (571)
+.+ ...++++||||.-..+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHhcCCcEEEECCHHHhh
Confidence 322 24689999999965554
No 239
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.08 E-value=0.0033 Score=57.79 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
++.+|+++|++|+||||++..|+..+ | ..+++.|..+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~~ 44 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLHP 44 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccccc
Confidence 45799999999999999999888765 4 34678886653
No 240
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.07 E-value=0.0019 Score=59.21 Aligned_cols=82 Identities=18% Similarity=0.047 Sum_probs=43.0
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HH---HHhhhhcCeeEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LV---TTFNIEIGITGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~---~~f~~~~~i~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||...... . . ....-..+.+++|+|+........ .. ..+...-...-+|+||+|...
T Consensus 58 ~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRS-V---T--RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131 (186)
T ss_dssp EEEEEEEEECCSGGGHH-H---H--HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHHHH-H---H--HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 36789999999643211 1 1 111224688899999876533211 11 111111112458899999632
Q ss_pred --ChhHHHHHHHHhCCCe
Q 008282 337 --RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 132 EVTFLEASRFAQENELMF 149 (186)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 1223344455555554
No 241
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.0054 Score=56.63 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+.+|+|+|++||||||++..|+..+ | ..++++|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 46799999999999999998888765 4 3456765
No 242
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.06 E-value=0.00016 Score=80.82 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
...|+++|..++||||++..|....
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999886543
No 243
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.05 E-value=0.0013 Score=62.87 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=37.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.++.+++|+|++|+||||++..|+..+...|..+..|..|.|-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 3567999999999999999999999888667788889888654
No 244
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.03 E-value=0.00022 Score=77.33 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=35.3
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---------HHHHHHHHhhhhcCe--eEEEEccC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---------EAAALVTTFNIEIGI--TGAILTKL 332 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---------~a~~~~~~f~~~~~i--~GVIlNKl 332 (571)
+++.+.|+||||.-.. ...+ +..+..+|.++||+|+..+. ...+.+.. ....++ .-|++||+
T Consensus 119 ~~~~~~iiDtPGh~~f----~~~~--~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGY----VTNM--INGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ARTQGINHLVVVINKM 191 (467)
T ss_dssp SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHHTTCSSEEEEEECT
T ss_pred CCeEEEEEECCCcHHH----HHHH--HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH-HHHcCCCEEEEEEECc
Confidence 4568999999997432 2222 12233568999999997652 11222221 123454 34789999
Q ss_pred CCC
Q 008282 333 DGD 335 (571)
Q Consensus 333 D~~ 335 (571)
|..
T Consensus 192 Dl~ 194 (467)
T 1r5b_A 192 DEP 194 (467)
T ss_dssp TST
T ss_pred cCC
Confidence 974
No 245
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.03 E-value=0.001 Score=75.62 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
+..|+|+|.+|+||||++..|.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999998887
No 246
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.03 E-value=0.002 Score=60.98 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHH---HHhhhh---cCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV---TTFNIE---IGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~---~~f~~~---~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||... ........ .-..+.+++|+|+.......... ..+... .++ .-+|+||+|...
T Consensus 83 ~~~l~l~Dt~G~~~----~~~~~~~~--~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQER----FRSLTTAF--FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEEEEEEESHHH----HHHHHHHH--HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred eEEEEEEECCCcHh----HHhHHHHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 56799999999421 11111111 22458899999997654332222 222211 122 358899999642
Q ss_pred ---ChhHHHHHHHHhCCCeEEE
Q 008282 337 ---RGGAALSVKEVSGKPIKLV 355 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI~fi 355 (571)
....+..++...+.++..+
T Consensus 157 ~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 157 REVNERQARELADKYGIPYFET 178 (217)
T ss_dssp CCSCHHHHHHHHHHTTCCEEEE
T ss_pred cccCHHHHHHHHHHCCCcEEEE
Confidence 1234455666677776433
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.03 E-value=0.00047 Score=63.92 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+.+|+|+|++||||||++..|+..|..+|.+.-+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 45899999999999999999999998888655666654
No 248
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.02 E-value=0.014 Score=59.81 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=84.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCc-------eecCCCCCCHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-------VYTAGTEVKPSQIAK 255 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~-------v~~~~~~~~p~~v~~ 255 (571)
..+++++|+.|+||||+...|+... .|++++++..|.-.... +.. .....+.. ++.+....+....+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~i-dg~--~l~~~~~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSV-DDQ--LIGDRATQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCE-EEE--EECTTSCEEEEETTSCEEECTTSCHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCc-cHH--HHhCCCCCEEEECCCceEEcccHHHHHHHH
Confidence 3589999999999999998887543 68999999877422110 000 00000000 111111222222222
Q ss_pred HHHHHHHhC--CCcEEEEeCCCCCcccHHHHHHH---HHHHhhhCCceEEEEEeCcchHHHHHHHHH-hhhhcCeeEEEE
Q 008282 256 QGLEEAKKK--NVDVVIVDTAGRLQIDKAMMDEL---KDVKRVLNPTEVLLVVDAMTGQEAAALVTT-FNIEIGITGAIL 329 (571)
Q Consensus 256 ~~l~~~~~~--~~DvIIIDTpG~l~~d~~l~~eL---~~i~~~~~pd~vlLVvda~~gq~a~~~~~~-f~~~~~i~GVIl 329 (571)
..+...... .+|++++|+.+..... .+...+ ........-+.++-++|+....+....... .......+-+|+
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEE
Confidence 222111223 3599999999875321 121111 112222222456667787543222111111 111234456888
Q ss_pred ccCCCCCChhHHHHHHHHh--CCCeEEEecCC
Q 008282 330 TKLDGDSRGGAALSVKEVS--GKPIKLVGRGE 359 (571)
Q Consensus 330 NKlD~~~~~g~~lsi~~~~--g~PI~fig~Ge 359 (571)
||.|.......+....... +.+|.++..++
T Consensus 158 ~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 158 TKTDVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp ECTTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred ECcccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 9999653323344433333 46676666553
No 249
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.02 E-value=0.0014 Score=61.25 Aligned_cols=110 Identities=26% Similarity=0.319 Sum_probs=57.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+...|+++|.+||||||++..|. .+.-+ . +.|. .+......
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~-----~~~~~---~---~~~t-----------~~~~~~~~----------------- 68 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK-----LGEIV---T---TIPT-----------IGFNVETV----------------- 68 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC-----SSCCE---E---EEEE-----------TTEEEEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHH-----hCCcc---c---cCCc-----------CceeEEEE-----------------
Confidence 45679999999999999998774 12111 1 1110 11111000
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhhh---cCe-eEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE---IGI-TGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~~---~~i-~GVIlNKlD~ 334 (571)
...++.+.|+||||........ ... .-..+.+++|+|+...+ ........+... .++ .-+|+||+|.
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~~----~~~--~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 69 EYKNICFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp EETTEEEEEEECC-----CTTH----HHH--HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHH----HHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 1146789999999974321111 111 12458899999986553 222222222211 122 4588999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 143 ~~ 144 (192)
T 2b6h_A 143 PN 144 (192)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 250
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.01 E-value=0.0015 Score=66.54 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=34.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+..++++|++|+||||++..++..+...|.++..++++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 3468999999999999999999999888899999987644
No 251
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.00 E-value=0.01 Score=55.78 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 180 KSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 180 ~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
...+.+|+|+|++||||||++..|+..+ |. .++++|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 3467899999999999999998888654 43 466766
No 252
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.00 E-value=0.0038 Score=64.38 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ--------GKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~--------G~kVlLVd~D~ 221 (571)
.+..++++|++|+||||++..++..+... +..+..++|..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 35689999999999999999999988765 78888888643
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.003 Score=56.97 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEE
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCM 215 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVl 215 (571)
.+|+++|++||||||++..| .+.|..+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 37899999999999999877 45577653
No 254
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.99 E-value=0.00032 Score=71.34 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=34.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++.+|+++|+.||||||++..|+..|...|.++.++++|-|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999999888888899999999764
No 255
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.99 E-value=0.0044 Score=64.96 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..+|+++|.+|+||||+...|+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999998886
No 256
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.98 E-value=0.0016 Score=59.89 Aligned_cols=110 Identities=23% Similarity=0.335 Sum_probs=59.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+...|+++|.+||||||++..|. +.+. ..+.|. .+......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~------~~~~-----~~~~~t-----------~~~~~~~~----------------- 57 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN------GEDV-----DTISPT-----------LGFNIKTL----------------- 57 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT------TCCC-----SSCCCC-----------SSEEEEEE-----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCCC-----Cccccc-----------CccceEEE-----------------
Confidence 35679999999999999997775 2221 111111 11111100
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchH---HHHHHHHHhhhh---cC-eeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQ---EAAALVTTFNIE---IG-ITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq---~a~~~~~~f~~~---~~-i~GVIlNKlD~ 334 (571)
..+++.+.|+||||.... ..+. -...-..+.+++|+|++... ++......+... .+ ..-+|+||+|.
T Consensus 58 ~~~~~~~~~~Dt~G~~~~-----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 58 EHRGFKLNIWDVGGQKSL-----RSYW-RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp EETTEEEEEEEECCSHHH-----HTTG-GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhH-----HHHH-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 014678999999996321 1110 01112468889999986543 222222222111 12 24588999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 132 ~~ 133 (186)
T 1ksh_A 132 PG 133 (186)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 257
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.98 E-value=0.00045 Score=63.30 Aligned_cols=110 Identities=25% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++..|+++|.+||||||++..|. +.+.. .+.+ ..+......
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~------~~~~~-----~~~~-----------t~~~~~~~~----------------- 57 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ------IGEVV-----TTKP-----------TIGFNVETL----------------- 57 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC------CSEEE-----EECS-----------STTCCEEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCcC-----ccCC-----------cCccceEEE-----------------
Confidence 45679999999999999997664 22221 1111 111111100
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhh---cC-eeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIE---IG-ITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~---~~-i~GVIlNKlD~ 334 (571)
..+++.+.|+||||........ . ...-..+.+++|+|+... +........+... .+ ..-+|+||+|.
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~~----~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 58 SYKNLKLNVWDLGGQTSIRPYW----R--CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp EETTEEEEEEEEC----CCTTG----G--GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHH----H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 1135789999999974321110 0 011235788999998654 2332323333221 22 24588999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 132 ~~ 133 (183)
T 1moz_A 132 PG 133 (183)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 258
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.97 E-value=0.00044 Score=65.26 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
+..|+++|.+||||||++..|.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4468899999999999997774
No 259
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.97 E-value=0.00065 Score=63.01 Aligned_cols=42 Identities=45% Similarity=0.709 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
++.+|+++|++|+||||++..|+..+...|..+..++.|..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 467899999999999999999999887789888878876544
No 260
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.96 E-value=0.0007 Score=62.85 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHH---HHHHHhhhh-----cCe-eEEEEccCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA---ALVTTFNIE-----IGI-TGAILTKLDG 334 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~---~~~~~f~~~-----~~i-~GVIlNKlD~ 334 (571)
+++.+.|+||||........ . ...-..+.+++|+|+....... .....+... .++ .-+|+||+|.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLW----E--HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGG----G--GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHH----H--HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 45789999999964321110 0 1122458899999997653322 222222211 122 3588999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 139 ~~ 140 (190)
T 2h57_A 139 RD 140 (190)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 261
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.0028 Score=64.88 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=55.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc---CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~---G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l 258 (571)
.+..++|+|++|+||||++..++..+... +..+..++|..... ..+.+.......+.+.-. ......+......
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~ 120 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT-PYRVLADLLESLDVKVPF--TGLSIAELYRRLV 120 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-HHHHHHHHTTTTSCCCCS--SSCCHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-HHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHH
Confidence 45689999999999999999999888765 77888888753321 112222333344433211 1223344343333
Q ss_pred HHHHhCC-CcEEEEeCCCCC
Q 008282 259 EEAKKKN-VDVVIVDTAGRL 277 (571)
Q Consensus 259 ~~~~~~~-~DvIIIDTpG~l 277 (571)
..+...+ ..++|||=+..+
T Consensus 121 ~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHH
T ss_pred HHHhccCCeEEEEEcChhhh
Confidence 3343222 678999976543
No 262
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.96 E-value=0.0011 Score=76.92 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHH-hhhhcCeeEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTT-FNIEIGITGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~-f~~~~~i~GVIlNKlD~~ 335 (571)
++.+.||||||...........+ + ..|.+++|+|+..+ +.. ..... ....++ .-+|+||+|..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l----~--~aD~ailVvDa~~g~~~qt~-~~~~~~~~~~~p-~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAAL----R--VTDGALVVVDTIEGVCVQTE-TVLRQALGERIK-PVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHH----H--TCSEEEEEEETTTBSCHHHH-HHHHHHHHTTCE-EEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHH----H--hCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-eEEEEECCCcc
Confidence 67899999999876544332222 2 35899999999765 321 22221 222233 35899999954
No 263
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.95 E-value=0.00056 Score=65.45 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D~~R 223 (571)
++.+|+++|++|+||||++..|+..|. ..|.++.+++.|.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 467999999999999999999999998 779889889877654
No 264
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.94 E-value=0.00061 Score=64.06 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh---cCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~---~~i-~GVIlNKlD~~~ 336 (571)
..+.+.|+||||....... .....-..+.+++|+|....... ......+... .++ .-+|+||+|...
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSIL------PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp -CEEEEEEEECCCCTTCCC------CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred EEEEEEEEECCCccchHHH------HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 4678899999996432110 00111235888999998755322 2222222211 122 358889999532
Q ss_pred ----ChhHHHHHHHHhCCCe
Q 008282 337 ----RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ----~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 144 ~~~v~~~~~~~~~~~~~~~~ 163 (201)
T 3oes_A 144 EREVQAVEGKKLAESWGATF 163 (201)
T ss_dssp GCCSCHHHHHHHHHHHTCEE
T ss_pred ccccCHHHHHHHHHHhCCeE
Confidence 2233445666677665
No 265
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.93 E-value=0.00093 Score=62.90 Aligned_cols=39 Identities=28% Similarity=0.280 Sum_probs=35.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
..+++|+|++|+||||++..|+..+...|++|.++..|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 358999999999999999999999998999999999875
No 266
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.91 E-value=0.0035 Score=69.68 Aligned_cols=109 Identities=27% Similarity=0.320 Sum_probs=61.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCC--CCCCHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAG--TEVKPSQIAKQGLEE 260 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~--~~~~p~~v~~~~l~~ 260 (571)
..+++++|++|+||||++..|+..+...|++|++++ .+.+ +.+.+. +..+.+..... ....+ .... ...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A-pT~~--Aa~~L~---e~~~~~a~Tih~ll~~~~-~~~~--~~~ 274 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA-PTGK--AARRLG---EVTGRTASTVHRLLGYGP-QGFR--HNH 274 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-SSHH--HHHHHH---HHHTSCEEEHHHHTTEET-TEES--CSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec-CcHH--HHHHhH---hhhcccHHHHHHHHcCCc-chhh--hhh
Confidence 458899999999999999999999999999997665 2332 223332 11222211000 00000 0000 000
Q ss_pred HHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCC-ceEEEEEeC
Q 008282 261 AKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNP-TEVLLVVDA 305 (571)
Q Consensus 261 ~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~p-d~vlLVvda 305 (571)
.....+|+||||-++.+. ..++.. +...+.+ ..+++|-|.
T Consensus 275 ~~~~~~dvlIIDEasml~--~~~~~~---Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMG--DALMLS---LLAAVPPGARVLLVGDT 315 (574)
T ss_dssp SSCCSCSEEEECCGGGCC--HHHHHH---HHTTSCTTCEEEEEECT
T ss_pred cccccCCEEEEcCccCCC--HHHHHH---HHHhCcCCCEEEEEecc
Confidence 011368999999999875 334433 3444433 356777775
No 267
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.91 E-value=0.0029 Score=62.42 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
++.+|+|.|+.|+||||.+..|+.+|...|+++.+..-.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 4679999999999999999999999999999943444444
No 268
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.91 E-value=0.00066 Score=66.93 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-----cCCeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK-----QGKSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~-----~G~kVlLVd~D~~ 222 (571)
.+|.+|+|+|++||||||++..|+..|.- .+++|.++++|-|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 35789999999999999999999887653 2678889999865
No 269
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.90 E-value=0.02 Score=55.71 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.++-++++|++|+||||++..+|..+ +..+..+++..+... + .......+...+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~a 94 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV----------------I----GGLGAARVRSLFKEA 94 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS----------------S----TTHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh----------------c----cChhHHHHHHHHHHH
Confidence 45678999999999999999998765 566666666433210 0 001122334455555
Q ss_pred HhCCCcEEEEeCCCCC
Q 008282 262 KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l 277 (571)
......+++||-...+
T Consensus 95 ~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 95 RARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHTCSEEEEEECC---
T ss_pred HhcCCeEEEEeCcchh
Confidence 5456789999987665
No 270
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.0085 Score=55.75 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH------HHHHHHhhhhcCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA------AALVTTFNIEIGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a------~~~~~~f~~~~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||... ..... .. ....+.+++|+|++..... ...+..+....++ .-+|.||+|...
T Consensus 75 ~~~~~l~Dt~G~~~--~~~~~---~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 75 VVSMEILDTAGQED--TIQRE---GH--MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp EEEEEEEECCCCCC--CHHHH---HH--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred EEEEEEEECCCCCc--ccchh---hh--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 56789999999754 11111 11 1234888999998754322 1222222211222 358899999542
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~ 166 (196)
T 2atv_A 148 RQVSTEEGEKLATELACAF 166 (196)
T ss_dssp CCSCHHHHHHHHHHHTSEE
T ss_pred cccCHHHHHHHHHHhCCeE
Confidence 1233445555666655
No 271
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.0066 Score=56.55 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
+.+|+++|++||||||++..|+..+ | ..+++.|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4689999999999999999998776 3 34667654
No 272
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.89 E-value=0.0094 Score=55.35 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
++.+|+++|++||||||++..||..+ |.. +++.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l---~~~--~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY---GYT--HLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence 35689999999999999999998766 443 56665
No 273
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.89 E-value=0.0022 Score=79.04 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=83.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceec---CCCCCCHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT---AGTEVKPSQIAKQGL 258 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~---~~~~~~p~~v~~~~l 258 (571)
+.++|-+.|+.|+||||++..+++...++|..+++||+.-.- ++ .|+..+|+++-. ..+. ...+.+..+-
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~----~~--~~~~~~Gv~~~~l~~~~p~-~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DP--IYARKLGVDIDNLLCSQPD-TGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CH--HHHHHTTCCGGGCEEECCS-SHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC----CH--HHHHHcCCCHHHeEEeCCC-cHHHHHHHHH
Confidence 357999999999999999999999988999999999986321 12 135566665322 2222 1222222222
Q ss_pred HHHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCeeEEEEccCC-----
Q 008282 259 EEAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLD----- 333 (571)
Q Consensus 259 ~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i~GVIlNKlD----- 333 (571)
..++....|+|+||....+....+.-.++-+ ..+=+.+..-..+.+.+..+....++..+++|.+.
T Consensus 1503 ~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~---------~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~ 1573 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAALTPKAEIEGEIGD---------SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 1573 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCTTTTC----------------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC-----
T ss_pred HHHHcCCCCEEEEccHHhCCccccccccccc---------cchhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccce
Confidence 2234578999999997665432221112100 00111111011222333334445567777777764
Q ss_pred -----CCCChhHHHHHHH
Q 008282 334 -----GDSRGGAALSVKE 346 (571)
Q Consensus 334 -----~~~~~g~~lsi~~ 346 (571)
+++.+|.++..-.
T Consensus 1574 ~~~~~~~~~~g~al~~~~ 1591 (1706)
T 3cmw_A 1574 MFGNPETTTGGNALKFYA 1591 (1706)
T ss_dssp ---CCCCBSSCSHHHHHE
T ss_pred ecCCCccccCcceeeeee
Confidence 4566777765543
No 274
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.89 E-value=0.0012 Score=60.28 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhh---cCe-eEEEEccCCCCC-
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE---IGI-TGAILTKLDGDS- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~---~~i-~GVIlNKlD~~~- 336 (571)
.+.+.|+||||....... . . ......+.+++|+|......... ....+... .++ .-+|.||+|...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~-~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIF-P---Q--TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp EEEEEEEECCCCCTTCCC-C---G--GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred EEEEEEEeCCCchhhhHH-H---H--HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 467899999996532100 0 0 01123578899999875433222 11122111 122 358889999532
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+...+...+.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (181)
T 3t5g_A 127 RVISYEEGKALAESWNAAF 145 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred ceecHHHHHHHHHHhCCcE
Confidence 2334455666666654
No 275
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.89 E-value=0.0016 Score=60.66 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=44.5
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHH----Hhhhh--cCeeEEEEccCCCCC-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT----TFNIE--IGITGAILTKLDGDS- 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~----~f~~~--~~i~GVIlNKlD~~~- 336 (571)
..+.+.|+||||.-... .+. -...-..+.+++|+|............ .+... -...-+|.||+|...
T Consensus 69 ~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYD-----RLR-PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEEEEEECCSGGGT-----TTG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred EEEEEEEEECCCcHHHH-----HHh-HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 34667999999964321 000 001224588899999976643333211 11111 112458889999532
Q ss_pred -----ChhHHHHHHHHhCCC
Q 008282 337 -----RGGAALSVKEVSGKP 351 (571)
Q Consensus 337 -----~~g~~lsi~~~~g~P 351 (571)
....+...+...+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 143 GSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp TTTCCCHHHHHHHHHHHTCS
T ss_pred CCCcccHHHHHHHHHhcCCC
Confidence 233445566667766
No 276
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.88 E-value=0.0028 Score=57.47 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..|.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999997775
No 277
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.88 E-value=0.0013 Score=71.86 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=59.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++.+|+++|..++||||++..|...-...+. ..|+.........
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-----------------------~~GIT~~i~~~~v------------- 46 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-----------------------AGGITQHIGAYHV------------- 46 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-----------------------BCCCCCCSSCCCC-------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc-----------------------CCCeeEeEEEEEE-------------
Confidence 4568999999999999999877532111111 0111111000000
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHh-hhhcCeeEEEEccCCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF-NIEIGITGAILTKLDGD 335 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f-~~~~~i~GVIlNKlD~~ 335 (571)
..+++.+.|+||||.-...... ...+...|.++||+|+..+ |.. +.+... ...++ .-+++||+|..
T Consensus 47 ~~~~~~i~~iDTPGhe~f~~~~------~~~~~~aD~aILVVda~~g~~~qT~-e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 47 ETENGMITFLDTPGHAAFTSMR------ARGAQATDIVVLVVAADDGVMPQTI-EAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp CTTSSCCCEECCCTTTCCTTSB------CSSSBSCSSEEEEEETTTBSCTTTH-HHHHHHHHTTCC-EEEEEECSSSS
T ss_pred EECCEEEEEEECCCcHHHHHHH------HHHHhhCCEEEEEeecccCccHHHH-HHHHHHHhcCce-EEEEEEecccc
Confidence 1245678999999975431110 0112235788999998653 222 212111 12233 45789999953
No 278
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.87 E-value=0.025 Score=55.12 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV 217 (571)
++.+|+|.|++|+||||++..|+..|.. |..|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 5689999999999999999999999988 8888543
No 279
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.87 E-value=0.00099 Score=72.50 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=38.9
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHh-hhhcCeeEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTF-NIEIGITGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f-~~~~~i~GVIlNKlD~~~ 336 (571)
+++.+.|+||||.- .....+. ..+...|.+++|+|+..+ |.. +.+... ...+++ -+++||+|...
T Consensus 71 ~~~~i~iiDtPGh~----~~~~~~~--~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~~ip~-IvviNK~Dl~~ 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHA----DLIRAVV--SAADIIDLALIVVDAKEGPKTQTG-EHMLILDHFNIPI-IVVITKSDNAG 139 (482)
T ss_dssp TTEEEEECCCSSHH----HHHHHHH--HHTTSCCEEEEEEETTTCSCHHHH-HHHHHHHHTTCCB-CEEEECTTSSC
T ss_pred CCEEEEEEECCChH----HHHHHHH--HHHhhCCEEEEEEecCCCccHHHH-HHHHHHHHcCCCE-EEEEECCCccc
Confidence 45789999999952 2223222 223356899999999653 322 222211 123444 68999999754
No 280
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.85 E-value=0.0053 Score=65.37 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
..|.+|+++|++||||||++..|+..+ | ..+|+.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccchHH
Confidence 357899999999999999998887543 3 4577888764
No 281
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.84 E-value=0.0033 Score=63.08 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
+...++|+|++|+||||++..||..+...+..+..++|..+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 3458999999999999999999999887777788888876654
No 282
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0014 Score=69.18 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=64.4
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHH
Q 008282 176 LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255 (571)
Q Consensus 176 l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~ 255 (571)
+...+.+-..|+++|.|.|||||+...|. |.++.+ +| | |.+ +.....|+ +
T Consensus 65 f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v--~~-~-pft-----T~~~~~g~--~------------- 114 (376)
T 4a9a_A 65 FDVARTGVASVGFVGFPSVGKSTLLSKLT------GTESEA--AE-Y-EFT-----TLVTVPGV--I------------- 114 (376)
T ss_dssp TTBCBCSSEEEEEECCCCHHHHHHHHHHH------SBCCCG--GG-T-CSS-----CCCEEEEE--E-------------
T ss_pred ceEeecCCCeEEEECCCCCCHHHHHHHHh------CCCCcc--cC-C-CCc-----eeeeeeEE--E-------------
Confidence 33344455679999999999999998886 334321 11 1 110 00011111 1
Q ss_pred HHHHHHHhCCCcEEEEeCCCCCcccHHHHHHHH-HHHhhhCCceEEEEEeCcchHHHHHHHH----Hhhhhc--CeeEEE
Q 008282 256 QGLEEAKKKNVDVVIVDTAGRLQIDKAMMDELK-DVKRVLNPTEVLLVVDAMTGQEAAALVT----TFNIEI--GITGAI 328 (571)
Q Consensus 256 ~~l~~~~~~~~DvIIIDTpG~l~~d~~l~~eL~-~i~~~~~pd~vlLVvda~~gq~a~~~~~----~f~~~~--~i~GVI 328 (571)
...+..+.|+||||...........-. .+..+-.+|.+++|+|+.........+. .+...+ ...-++
T Consensus 115 ------~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~ 188 (376)
T 4a9a_A 115 ------RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDIL 188 (376)
T ss_dssp ------EETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEE
T ss_pred ------EeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhh
Confidence 124667999999998643211110111 1222224688999999976533333222 222111 123488
Q ss_pred EccCCC
Q 008282 329 LTKLDG 334 (571)
Q Consensus 329 lNKlD~ 334 (571)
+||.|.
T Consensus 189 ~nK~d~ 194 (376)
T 4a9a_A 189 IKKKEK 194 (376)
T ss_dssp EEECSS
T ss_pred hhHhhh
Confidence 999884
No 283
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.82 E-value=0.0009 Score=62.55 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHH---HHHHHHHhhh---hcCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQE---AAALVTTFNI---EIGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~---a~~~~~~f~~---~~~i-~GVIlNKlD~~~ 336 (571)
+++.+.++||||...... +. . ...-..+.+++|+|++..+. .......+.. ..++ .-+|.||+|...
T Consensus 65 ~~~~~~i~Dt~G~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARR-LW---K--DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTEEEEEEECCCSGGGTT-SG---G--GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHH-HH---H--HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 457899999999743211 00 0 01124588899999976532 2222222211 1122 458899999654
No 284
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.81 E-value=0.0023 Score=60.98 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 4568999999999999998875
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.81 E-value=0.014 Score=55.07 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
++.+|+++|++|+||||++..|+..+ |. .+++.|.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g~--~~i~~d~~~~ 65 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---GL--EFAEADAFHS 65 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---CC--EEEEGGGGSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---CC--eEEccccccc
Confidence 45799999999999999999998776 43 4678876653
No 286
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00073 Score=63.92 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHh
Confidence 4568999999999999997775
No 287
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.80 E-value=0.00023 Score=76.29 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=36.8
Q ss_pred cEEEEeCCCCCcccHH---HHHHHHHHHhhhCCceEEEEEeCcchHHHHHHHHHhhhhcCe-eEEEEccCCCCC
Q 008282 267 DVVIVDTAGRLQIDKA---MMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGI-TGAILTKLDGDS 336 (571)
Q Consensus 267 DvIIIDTpG~l~~d~~---l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~~~f~~~~~i-~GVIlNKlD~~~ 336 (571)
.+.|+||||....... ....... .....+.+++|+|+............+.. .++ .-+|+||+|...
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~--~l~~aD~vllVvD~~~~~~~~~~l~~l~~-~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARR--VFYRADCGILVTDSAPTPYEDDVVNLFKE-MEIPFVVVVNKIDVLG 154 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHH--HHTSCSEEEEECSSSCCHHHHHHHHHHHH-TTCCEEEECCCCTTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHH--HHhcCCEEEEEEeCCChHHHHHHHHHHHh-cCCCEEEEEeCcCCCC
Confidence 7999999997543110 0111111 12246889999998433333333333332 233 458899999643
No 288
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.80 E-value=0.005 Score=57.51 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch--HHHHH---HHHHhh-hhcCe-eEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG--QEAAA---LVTTFN-IEIGI-TGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g--q~a~~---~~~~f~-~~~~i-~GVIlNKlD~~ 335 (571)
..+.+.|+||||........... ... .-..+.+++|+|.+.. +.... .+.... ..-++ .-+|.||+|..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~-~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDY-EMI--FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCH-HHH--HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhc-ccc--cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 45789999999974321111000 011 1235889999998654 22222 122221 11122 34788999954
No 289
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.80 E-value=0.00077 Score=64.34 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhh---hhcCeeEEEEccCCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFN---IEIGITGAILTKLDGDSR 337 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~---~~~~i~GVIlNKlD~~~~ 337 (571)
..+.+.|+||||........ ... ....+.+++|+|......... ....+. ...+ .-+|.||+|....
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLR----DGY--YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCC----HHH--HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHH----HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 35689999999953221100 011 124588899999876533221 112222 2233 3588899995422
Q ss_pred --hhHHHHHHHHhCCCe
Q 008282 338 --GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 --~g~~lsi~~~~g~PI 352 (571)
.......+...+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~ 151 (221)
T 3gj0_A 135 KVKAKSIVFHRKKNLQY 151 (221)
T ss_dssp SSCGGGCCHHHHHTCEE
T ss_pred cccHHHHHHHHHcCCEE
Confidence 122233444555554
No 290
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.80 E-value=0.0007 Score=63.40 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4568999999999999997775
No 291
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.79 E-value=0.0039 Score=62.17 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
..|+++|.+|+||||++..|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998774
No 292
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.79 E-value=0.0045 Score=66.24 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
.+..++++|++||||||+...|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999998776
No 293
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.78 E-value=0.0061 Score=62.47 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=54.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc------CCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAK 255 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~------G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~ 255 (571)
.+..++|+|++|+||||++..++..+... +..+..++|....... +-+.......+.++-. ......++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~l~~~~~~--~~~~~~~~~~ 119 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY-RVASAIAEAVGVRVPF--TGLSVGEVYE 119 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH-HHHHHHHHHHSCCCCS--SCCCHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH-HHHHHHHHHhCCCCCC--CCCCHHHHHH
Confidence 45679999999999999999999888654 6677777765443211 1111222223332211 1223344444
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCc
Q 008282 256 QGLEEAKK-KNVDVVIVDTAGRLQ 278 (571)
Q Consensus 256 ~~l~~~~~-~~~DvIIIDTpG~l~ 278 (571)
.....+.. ....+++||=...+.
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHhccCCeEEEEEccHhhhc
Confidence 43433322 224589999887654
No 294
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.75 E-value=0.00099 Score=67.74 Aligned_cols=42 Identities=26% Similarity=0.390 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcC--CeEE-EEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG--KSCM-LVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G--~kVl-LVd~D~~ 222 (571)
.+|.+|+|+|++||||||++..|+..|...| .++. +|..|.|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 4678999999999999999999999998654 4444 4488875
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.73 E-value=0.00083 Score=61.60 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
|.+|+++|++||||||++..|+.. .....+++.|.+|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHHH
Confidence 568999999999999999888762 23456777776553
No 296
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.72 E-value=0.0013 Score=61.99 Aligned_cols=38 Identities=37% Similarity=0.377 Sum_probs=34.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+..++++|++|+||||++..++..+..+|.+|.++++.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 35789999999999999999999999889999888764
No 297
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.72 E-value=0.0098 Score=55.77 Aligned_cols=83 Identities=10% Similarity=-0.001 Sum_probs=43.2
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh---cCe-eEEEEccCCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGI-TGAILTKLDGDSR 337 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~---~~i-~GVIlNKlD~~~~ 337 (571)
.+.+.|+||+|.......+... . .-..+.+++|+|.+..... ......+... .++ .-+|.||+|....
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDH---C--LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHH---H--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred EEEEEEEecCCCccchhhhHHH---h--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 4678899999975432212111 1 1135888999998654322 1222222211 122 3478899996422
Q ss_pred ----hhHHHHHHHHhCCCe
Q 008282 338 ----GGAALSVKEVSGKPI 352 (571)
Q Consensus 338 ----~g~~lsi~~~~g~PI 352 (571)
...+..++...+.++
T Consensus 146 ~~v~~~~~~~~a~~~~~~~ 164 (195)
T 3cbq_A 146 REVSLEEGRHLAGTLSCKH 164 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEE
T ss_pred CCcCHHHHHHHHHHhCCEE
Confidence 223344555555544
No 298
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0018 Score=61.93 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhh--cCe-eEEEEccCCCCC--
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE--IGI-TGAILTKLDGDS-- 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~--~~i-~GVIlNKlD~~~-- 336 (571)
.+.+.|+||||....... . . ...-..+.+++|+|......... ....+... .++ .-+|+||+|...
T Consensus 61 ~~~~~i~Dt~G~~~~~~~-~---~--~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAI-T---S--AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp EEEEEEECCTTTTTTTCC-C---G--GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred EEEEEEEECCCccchhhh-H---H--HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 367899999996432100 0 0 01123578899999876533222 12222211 122 457889999542
Q ss_pred --ChhHHHHHHHHhCCCe
Q 008282 337 --RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 --~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.|+
T Consensus 135 ~v~~~~~~~~~~~~~~~~ 152 (223)
T 3cpj_B 135 AVPTEESKTFAQENQLLF 152 (223)
T ss_dssp CSCHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHcCCEE
Confidence 1223444555556554
No 299
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.69 E-value=0.0023 Score=71.50 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCe-eEEEEccCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGI-TGAILTKLDGD 335 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i-~GVIlNKlD~~ 335 (571)
.+.+.|+||||........ . .....+|.+++|+|++.| |.. ....... ..++ .-+++||+|..
T Consensus 69 ~~~i~liDTPGhe~F~~~~----~--r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~-~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLR----K--RGGALADLAILIVDINEGFKPQTQ-EALNILR-MYRTPFVVAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSB----C--SSSBSCSEEEEEEETTTCCCHHHH-HHHHHHH-HTTCCEEEEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHH----H--HHHhhCCEEEEEEECCCCccHhHH-HHHHHHH-HcCCeEEEEecccccc
Confidence 3469999999975431110 0 011236889999999764 322 2222222 2233 45889999964
No 300
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.65 E-value=0.0093 Score=54.17 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=18.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999997775
No 301
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.64 E-value=0.002 Score=60.97 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV 217 (571)
++.+|+|+|++||||||++..|+..|...|..|..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 467899999999999999999999998889888544
No 302
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.63 E-value=0.061 Score=54.94 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK 209 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~ 209 (571)
+..++|+|++|+||||++..+|..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999887753
No 303
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.62 E-value=0.0016 Score=67.82 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
.|+|+|.+||||||++..|.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~ 179 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS 179 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE
T ss_pred eeeeeCCCCCCHHHHHHHHH
Confidence 48899999999999997664
No 304
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.62 E-value=0.00093 Score=61.81 Aligned_cols=110 Identities=24% Similarity=0.261 Sum_probs=59.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++..|+++|.+||||||++..|. .+.-+ . +.|. .+......
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~-----~~~~~---~---~~~t-----------~~~~~~~~----------------- 61 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH-----LGDVV---T---TVPT-----------VGVNLETL----------------- 61 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC-----CSCCE---E---ECSS-----------TTCCEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH-----cCCCC---C---cCCC-----------CceEEEEE-----------------
Confidence 35679999999999999997763 12111 1 1110 11111100
Q ss_pred HhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhh---cC-eeEEEEccCCC
Q 008282 262 KKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIE---IG-ITGAILTKLDG 334 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~---~~-i~GVIlNKlD~ 334 (571)
..+++.+.|+||||....... . . ...-..+.+++|+|++.. +........+... .+ ..-+|+||+|.
T Consensus 62 ~~~~~~~~~~Dt~G~~~~~~~-~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 62 QYKNISFEVWDLGGQTGVRPY-W---R--CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp EETTEEEEEEEECCSSSSCCC-C---S--SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHH-H---H--HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 113678999999996432110 0 0 011245888999998654 2332223322211 12 24588999996
Q ss_pred CC
Q 008282 335 DS 336 (571)
Q Consensus 335 ~~ 336 (571)
..
T Consensus 136 ~~ 137 (189)
T 2x77_A 136 PD 137 (189)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 305
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.0024 Score=62.24 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
.+..+.+++|+-|+||||.+..++..+..+|++|+++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34579999999999999999999999999999999986
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.60 E-value=0.0019 Score=61.22 Aligned_cols=38 Identities=39% Similarity=0.494 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
++.+|+++|++||||||++..|+..+.. ++.+++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 5679999999999999999988876642 5889998864
No 307
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.02 Score=55.52 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=66.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH-HHhcCC--eEEEEeccCCchhHHHHHHHhhhccCCce----e-cCC-------C--
Q 008282 184 TVILLAGLQGVGKTTVSAKLANY-LKKQGK--SCMLVAGDVYRPAAIDQLVILGEQVGVPV----Y-TAG-------T-- 246 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~-La~~G~--kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v----~-~~~-------~-- 246 (571)
..++++|++|+||||+...+... +...+. .+.++-..+.|..+......+....+..+ - ... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 37899999999999877655543 333333 33444444666555443333333322211 0 000 0
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCcccHHHH-HHHHHHHhhhCCceEEEEEeCcchHH
Q 008282 247 ---EVKPSQIAKQGLEEAKKKNVDVVIVDTAGRLQIDKAMM-DELKDVKRVLNPTEVLLVVDAMTGQE 310 (571)
Q Consensus 247 ---~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~l~~d~~l~-~eL~~i~~~~~pd~vlLVvda~~gq~ 310 (571)
...|..+. +.+.. ...++++||||-+-....+.... ..+..+.... ++.-+++++|+...+
T Consensus 157 ~Ivv~Tpg~l~-~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 157 SIMFCTVGVLL-RKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTS 221 (235)
T ss_dssp EEEEEEHHHHH-HHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCH
T ss_pred eEEEECHHHHH-HHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHH
Confidence 01333332 33332 23689999999997643444433 3445554443 345577788876644
No 308
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0066 Score=56.19 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=36.7
Q ss_pred CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH----HHHhhh---hcCeeEEEEccCCCCC
Q 008282 265 NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL----VTTFNI---EIGITGAILTKLDGDS 336 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~----~~~f~~---~~~i~GVIlNKlD~~~ 336 (571)
.+.+.|+||||...... +. -...-..+.+++|+|.......... ...+.. ..+ .-+|.||+|...
T Consensus 65 ~~~~~i~D~~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDR-----LR-PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp EEEEEEECCCCSSSSTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEECCCCcchhH-----HH-HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 46789999999753211 00 0112246888999998765332221 122222 233 358999999653
No 309
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.59 E-value=0.0012 Score=60.21 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 3468899999999999997665
No 310
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.59 E-value=0.0054 Score=65.79 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=34.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc--CCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ--GKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~--G~kVlLVd~D~~ 222 (571)
+..++|.|++|+||||++..++..+... +.++..+++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 3468999999999999999999988766 888988887654
No 311
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.57 E-value=0.002 Score=68.36 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=36.5
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch---HHHHHHHHHhhhhcCe--eEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG---QEAAALVTTFNIEIGI--TGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g---q~a~~~~~~f~~~~~i--~GVIlNKlD~~~ 336 (571)
+.+.||||||.. .+...+ +..+..+|.++||+|+..+ ....+.+..+. .+++ .-+++||+|...
T Consensus 83 ~~i~iiDtPGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPGHE----ALMTTM--LAGASLMDGAILVIAANEPCPRPQTREHLMALQ-IIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSSHH----HHHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTCCCEEEEEECGGGSC
T ss_pred cEEEEEECCChH----HHHHHH--HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCCCcEEEEEECccCCC
Confidence 579999999953 222222 2223356899999999743 12222222222 2232 346799999654
No 312
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.55 E-value=0.02 Score=56.69 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=44.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+..++++|++|+||||++..+|..+ +..+..+.+..+.... .......+...+..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 106 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKF--------------------IGEGASLVKDIFKLA 106 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCS--------------------TTHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhc--------------------cchHHHHHHHHHHHH
Confidence 35579999999999999998887654 5666665543221100 011223344555555
Q ss_pred HhCCCcEEEEeCCCC
Q 008282 262 KKKNVDVVIVDTAGR 276 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~ 276 (571)
......+++||=...
T Consensus 107 ~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDA 121 (285)
T ss_dssp HHTCSEEEEEETTHH
T ss_pred HHcCCeEEEEECHHH
Confidence 556678999997543
No 313
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.54 E-value=0.0025 Score=59.37 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
+|+++|+.||||||++..|+..|...|..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999999998899886443
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.54 E-value=0.018 Score=55.35 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
++.+|+|+|++||||||++..||..+ |. .+++.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 35689999999999999998888654 43 355653
No 315
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.54 E-value=0.0011 Score=61.09 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=28.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.+|+++|++||||||++..|+..+ +.....++.|.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 4589999999999999998888655 344555667754
No 316
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.05 Score=55.95 Aligned_cols=102 Identities=6% Similarity=0.025 Sum_probs=57.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc-------CCeEEEEeccCCch--hHHHHHHHhhhccCCceecCCCCCCHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-------GKSCMLVAGDVYRP--AAIDQLVILGEQVGVPVYTAGTEVKPSQ 252 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~-------G~kVlLVd~D~~Rp--~a~dqL~~~~~~~gv~v~~~~~~~~p~~ 252 (571)
.|..+.++|++|+|||+++..++..|... +..++.|.|-.... ..+..+. ....|.... .....+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~--~~L~g~~~~----~~~~~~ 117 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW--FAISKENLC----GDISLE 117 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHH--HHHSCCC------CCCCHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHH--HHhcCCCCC----chHHHH
Confidence 45678999999999999999999998753 24566677654432 2222221 112232211 112234
Q ss_pred HHHHHHHHH--HhCCCcEEEEeCCCCCcccHHHHHHHHHH
Q 008282 253 IAKQGLEEA--KKKNVDVVIVDTAGRLQIDKAMMDELKDV 290 (571)
Q Consensus 253 v~~~~l~~~--~~~~~DvIIIDTpG~l~~d~~l~~eL~~i 290 (571)
.+...+..+ .....-+|++|-.-.+. +...+..+-.+
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~ 156 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKW 156 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhc
Confidence 444444443 12344588999887776 44444444443
No 317
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.54 E-value=0.0033 Score=58.63 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998775
No 318
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.53 E-value=0.12 Score=51.53 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCC----eEEEEec
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGK----SCMLVAG 219 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~----kVlLVd~ 219 (571)
++..++|+|++|+|||+++..+|..+...+. .+..+++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3457999999999999999999999887654 5555553
No 319
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.49 E-value=0.0028 Score=59.84 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=33.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
..+++++|+.|+||||++..++..+..+|++|+++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3588999999999999999999999889999998753
No 320
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.49 E-value=0.0055 Score=56.89 Aligned_cols=82 Identities=15% Similarity=0.091 Sum_probs=43.2
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhhh-----cCe-eEEEEccCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNIE-----IGI-TGAILTKLDG 334 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~~-----~~i-~GVIlNKlD~ 334 (571)
..+.+.|+||||...... +... ....+.+++|.|.+....... ....+... .++ .-+|.||+|.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-----~~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-----CERY--LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEEECCC---CCC-----THHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred EEEEEEEEECCCCCcchh-----HHHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence 356788999999643221 1111 223578899999875532221 11222111 122 3588999995
Q ss_pred CC----ChhHHHHHHHHhCCCe
Q 008282 335 DS----RGGAALSVKEVSGKPI 352 (571)
Q Consensus 335 ~~----~~g~~lsi~~~~g~PI 352 (571)
.. ....+..++...+.++
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~~ 161 (187)
T 3c5c_A 140 AQYRQVTKAEGVALAGRFGCLF 161 (187)
T ss_dssp GGGCSSCHHHHHHHHHHHTCEE
T ss_pred hhcCccCHHHHHHHHHHcCCcE
Confidence 32 2234455666677654
No 321
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.49 E-value=0.0017 Score=67.01 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=18.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
+..|+|+|.+||||||++..|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTC
T ss_pred cceEEEECCCCccHHHHHHHHh
Confidence 3468999999999999997663
No 322
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.48 E-value=0.003 Score=63.93 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
..|+.+++.|++|+|||+++..+|..+ |..+..+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 357789999999999999999999877 677776665
No 323
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.48 E-value=0.017 Score=57.65 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D 220 (571)
+..+++++|++|+||||+...|+..+... .-+|.+..-+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 34699999999999999999999888754 4567555433
No 324
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.47 E-value=0.016 Score=55.71 Aligned_cols=86 Identities=27% Similarity=0.348 Sum_probs=49.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHhC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKKK 264 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~~ 264 (571)
+|+|.|++||||+|.|..||..+ |.. .+-+.|.+|......- .++.... .++..+ ..-|.+++...+.... .
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~~-~istGdllR~~i~~~t-~lg~~~~-~~~~~G-~lvpd~iv~~lv~~~l-~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GFV-HISTGDILREAVQKGT-PLGKKAK-EYMERG-ELVPDDLIIALIEEVF-P 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCE-EEEHHHHHHHHHHHTC-HHHHHHH-HHHHHT-CCCCHHHHHHHHHHHC-C
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCe-EEcHHHHHHHHHHhcC-hhhhhHH-HHHhcC-CcCCHHHHHHHHHHhh-c
Confidence 67889999999999999998765 443 3556788875432110 0010000 001111 2234555555555543 4
Q ss_pred CCcEEEEeCCCCCc
Q 008282 265 NVDVVIVDTAGRLQ 278 (571)
Q Consensus 265 ~~DvIIIDTpG~l~ 278 (571)
..+-+|+|+=|+..
T Consensus 74 ~~~~~ilDGfPRt~ 87 (206)
T 3sr0_A 74 KHGNVIFDGFPRTV 87 (206)
T ss_dssp SSSCEEEESCCCSH
T ss_pred cCCceEecCCchhH
Confidence 45668999977753
No 325
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.46 E-value=0.0094 Score=65.69 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=72.9
Q ss_pred EEEEEE-cC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc---hhH-------------------HHHHHHhhhccCC
Q 008282 184 TVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAA-------------------IDQLVILGEQVGV 239 (571)
Q Consensus 184 ~VI~iv-G~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R---p~a-------------------~dqL~~~~~~~gv 239 (571)
+.|+++ |. +++||+++++.|++.|+++|++|..+-.|+|= |+. .++. .+-..+++
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~-~~~~~~~~ 82 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLG-HYERFIRT 82 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHH-HHHHHCSS
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhc-cceeeece
Confidence 578888 77 99999999999999999999999999999662 111 1111 11111221
Q ss_pred ceecCC------------------CC----CC--H--HHHHHHHHHHHHhCCCcEEEEeCCCCCcc--cHHHHHHHHHHH
Q 008282 240 PVYTAG------------------TE----VK--P--SQIAKQGLEEAKKKNVDVVIVDTAGRLQI--DKAMMDELKDVK 291 (571)
Q Consensus 240 ~v~~~~------------------~~----~~--p--~~v~~~~l~~~~~~~~DvIIIDTpG~l~~--d~~l~~eL~~i~ 291 (571)
..-+.. .. .. | .+.+++.+..+. .++|+|||+.+|...+ +..+++.+.++.
T Consensus 83 ~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~i~e~~gt~~di~~~~~~~~~~q~~ 161 (545)
T 1s1m_A 83 KMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGG-EGHDVVLVEIGGTVGDIESLPFLEAIRQMA 161 (545)
T ss_dssp CCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHH-TTCSEEEEEECSCTTSSTTHHHHHHHHHHH
T ss_pred eecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHh-ccCCEEEEECCCChhhhhChHHHHHHHHHh
Confidence 110000 00 01 1 123356666665 6899999999888754 445666667776
Q ss_pred hhhCCceEEE
Q 008282 292 RVLNPTEVLL 301 (571)
Q Consensus 292 ~~~~pd~vlL 301 (571)
..+....+++
T Consensus 162 ~~~~~~~~~~ 171 (545)
T 1s1m_A 162 VEIGREHTLF 171 (545)
T ss_dssp HHHCTTSEEE
T ss_pred HhhCcCcEEE
Confidence 6666555433
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.0028 Score=59.64 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEE
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCML 216 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlL 216 (571)
+.+|+|+|++||||||++..|+..|...| +|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 57899999999999999999999887777 6643
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.45 E-value=0.0031 Score=58.39 Aligned_cols=33 Identities=42% Similarity=0.643 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV 217 (571)
+|+++|.+||||||++..|+..|...|..|.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689999999999999999999998888877543
No 328
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.44 E-value=0.0041 Score=58.39 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..|.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999997765
No 329
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0036 Score=59.00 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=36.6
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHHH----HHhh---hhcCeeEEEEccCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV----TTFN---IEIGITGAILTKLDGD 335 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~~----~~f~---~~~~i~GVIlNKlD~~ 335 (571)
..+.+.|+||||...... +.. ...-..+.+++|+|.+......... ..+. ...+ .-+|.||+|..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 126 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSR-----LRP-LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLR 126 (212)
T ss_dssp CEEEEEEECCCCCCCCCC-------C-GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCcHHHHH-----HHH-hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhh
Confidence 346889999999753211 100 0122458889999987654332221 1222 1222 35889999953
No 330
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.43 E-value=0.00075 Score=74.45 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLAN 205 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~ 205 (571)
+.+|+++|..|+||||++..|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~ 26 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRK 26 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999988864
No 331
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.44 E-value=0.00049 Score=64.77 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..|.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 4568999999999999996664
No 332
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.43 E-value=0.0017 Score=59.37 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||++..|.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999997764
No 333
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.43 E-value=0.0036 Score=57.88 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
-|+++|.+||||||++..|+
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999998776
No 334
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.43 E-value=0.01 Score=65.41 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=36.8
Q ss_pred CEEEEEE-cC-CCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLA-GL-QGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~iv-G~-~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+.|+++ |. +++||+++++.|++.|+.+|++|..+-.|+|
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py 53 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY 53 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccc
Confidence 3678999 77 9999999999999999999999999999966
No 335
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.42 E-value=0.003 Score=58.23 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 3468899999999999997775
No 336
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.42 E-value=0.023 Score=60.08 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=36.3
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcc----hHHHHHHHHHhhhhcCe--eEEEEccCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMT----GQEAAALVTTFNIEIGI--TGAILTKLDGD 335 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~----gq~a~~~~~~f~~~~~i--~GVIlNKlD~~ 335 (571)
+.+.||||||.- .+...+ +..+..+|.++||+|+.. .|.. +.+..+. .+++ .-+++||+|..
T Consensus 81 ~~i~iiDtPGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~-~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHE----TLMATM--LSGASLMDGAILVIAANEPCPQPQTK-EHLMALE-ILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHH----HHHHHH--HTTCSCCSEEEEEEETTSCSSCHHHH-HHHHHHH-HTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHH----HHHHHH--HHhHhhCCEEEEEEECCCCCCCchhH-HHHHHHH-HcCCCeEEEEEEccCCC
Confidence 579999999952 222222 222334689999999974 3322 2222222 2333 35889999964
No 337
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.40 E-value=0.02 Score=59.75 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=59.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCCchhHHHHHHHhhhcc-CCceecCCC-CCCHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVYRPAAIDQLVILGEQV-GVPVYTAGT-EVKPSQIAKQGLE 259 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~Rp~a~dqL~~~~~~~-gv~v~~~~~-~~~p~~v~~~~l~ 259 (571)
..+++++|++|+||||+...|+..+... |..+..+. |+.... +.... .+.-...+. ..+. ..++.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~-------~~~~~~~v~q~~~~~~~~~~----~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV-------HESKKCLVNQREVHRDTLGF----SEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC-------CCCSSSEEEEEEBTTTBSCH----HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh-------hhccccceeeeeeccccCCH----HHHHH
Confidence 3489999999999999999999888765 66664443 432110 00000 011111111 1222 23455
Q ss_pred HHHhCCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcch
Q 008282 260 EAKKKNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTG 308 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~g 308 (571)
.+...+.|++++|=|. |.+.+..+..... ....++.+..+...
T Consensus 191 ~aL~~~PdvillDEp~----d~e~~~~~~~~~~--~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 191 SALREDPDIILVGEMR----DLETIRLALTAAE--TGHLVFGTLHTTSA 233 (356)
T ss_dssp HHTTSCCSEEEESCCC----SHHHHHHHHHHHH--TTCEEEEEESCSSH
T ss_pred HHhhhCcCEEecCCCC----CHHHHHHHHHHHh--cCCEEEEEEccChH
Confidence 5556799999999986 3344333323222 22445666655433
No 338
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.023 Score=52.56 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999997765
No 339
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.39 E-value=0.0055 Score=61.68 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
..|.+|+|+|++||||||++..|+. .|.. +|++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~----lg~~--~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN----LGAY--IIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH----HTCE--EEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH----CCCc--EEehhHH
Confidence 4578999999999999999988873 3654 5788754
No 340
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.39 E-value=0.0033 Score=59.35 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
++.+|+|+|.+||||||++..|+..|...+..+.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4678999999999999999999999988888884433
No 341
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.021 Score=58.49 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=47.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+++-++++|++|+|||+++..+|..+ .+..+..+++..... . . .......++..+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~----------~-----~-----~g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVS----------K-----W-----LGESEKLVKNLFQLA 101 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCC----------S-----S-----CCSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHh----------h-----h-----hhHHHHHHHHHHHHH
Confidence 45789999999999999999998766 245665555532110 0 0 011233445556666
Q ss_pred HhCCCcEEEEeCCCCC
Q 008282 262 KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l 277 (571)
......+|+||=...+
T Consensus 102 ~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSL 117 (322)
T ss_dssp HHTSSEEEEEETTTGG
T ss_pred HhcCCcEEEeecHHHh
Confidence 5567789999965443
No 342
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.37 E-value=0.002 Score=61.14 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+++|+|.+||||||++.+|+.. |.+++++++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 3788999999999999988744 7788888874
No 343
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.37 E-value=0.0038 Score=59.56 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHh
Confidence 3568899999999999997775
No 344
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.36 E-value=0.0015 Score=61.92 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=35.4
Q ss_pred CcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHH---HHHHhhh---hcCeeEEEEccCCCCC
Q 008282 266 VDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAA---LVTTFNI---EIGITGAILTKLDGDS 336 (571)
Q Consensus 266 ~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~---~~~~f~~---~~~i~GVIlNKlD~~~ 336 (571)
+.+.|+||||...... +.. . .....+.+++|+|+........ ....+.. .-...-+|+||+|...
T Consensus 61 ~~~~l~Dt~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAV-LKD---V--YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEEECSGGGTSC-CCH---H--HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEEecCCchhhch-HHH---H--HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 6799999999643210 000 0 1223588999999976633221 1122211 1112458899999653
No 345
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.36 E-value=0.018 Score=59.66 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=44.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.++.++|+|++|+||||++..+|..+ +..+..+++...... + .......++..+..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~----------------~----~g~~~~~~~~~~~~a 172 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK----------------W----VGEGEKMVRALFAVA 172 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----------------S----TTHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----------------c----cchHHHHHHHHHHHH
Confidence 46689999999999999999888654 667766665321100 0 001222334445555
Q ss_pred HhCCCcEEEEeCC
Q 008282 262 KKKNVDVVIVDTA 274 (571)
Q Consensus 262 ~~~~~DvIIIDTp 274 (571)
......+||||=.
T Consensus 173 ~~~~~~vl~iDEi 185 (357)
T 3d8b_A 173 RCQQPAVIFIDEI 185 (357)
T ss_dssp HHTCSEEEEEETH
T ss_pred HhcCCeEEEEeCc
Confidence 5566789999954
No 346
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.34 E-value=0.0011 Score=62.65 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA 204 (571)
+...|+++|.+||||||++..|.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHH
Confidence 35678999999999999997765
No 347
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.34 E-value=0.0035 Score=63.89 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH--hcCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLK--KQGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La--~~G~kVlLVd~D~~R 223 (571)
.++.+|+|+|++|+||||++..|+..+. -.+-.|.++++|-+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3568999999999999999999988776 345578888888654
No 348
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.33 E-value=0.016 Score=60.88 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEec
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAG 219 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~ 219 (571)
+..+++++|++|+||||++..|+..+... ..+|.++.-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 45689999999999999999999988765 457766553
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.32 E-value=0.013 Score=55.87 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
...+|+++|..||||||++..|+..+ | +-++|+|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 35799999999999999998777653 5 456788854
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.31 E-value=0.0012 Score=62.54 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+|+|+|++||||||++..|+..|...|.+|.++.-+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 689999999999999999999998888888877543
No 351
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.30 E-value=0.12 Score=55.13 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=37.3
Q ss_pred HhhcCCCCCCCChhhhhHHHhhhhhHHHHHhCCChHhhcCccccCCChhhhHHhhccCCCCHHHHHHHHHHH
Q 008282 431 VIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQL 502 (571)
Q Consensus 431 i~~m~Pg~~~~~~~~~~~~~~~~~~~~~ii~sMt~~Er~~p~~~~~~~sR~~ria~gsG~~~~~v~~l~~~~ 502 (571)
.+.-+|-.|-..........+.+..|..+.. ++ ..=.+|||+-.|++++|+..+++..
T Consensus 291 ~~~~~P~~g~~~~~~~~~~~~~l~~~~~~FG------------ld--~~sl~~~a~~~~~~~~~~~~~~~s~ 348 (413)
T 1tq4_A 291 LVNIIPSLTFLLDSDLETLKKSMKFYRTVFG------------VD--ETSLQRLARDWEIEVDQVEAMIKSP 348 (413)
T ss_dssp CBSSCTTSSCCCHHHHHHHHHHHHHHHHHTT------------CS--HHHHHHHHSSSSSCHHHHHHTCSHH
T ss_pred hcccCCCcchhccccHHHHHHHHHHHHHhcC------------CC--HHHHHHHHHHhCCCHHHHHHHHhCh
Confidence 3444553332223334444556777776665 32 2236799999999999999998887
No 352
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.28 E-value=0.003 Score=70.89 Aligned_cols=43 Identities=44% Similarity=0.691 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
++.+|+|+|.+||||||++..|+..|..+|..+..+|.|..|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 5789999999999999999999999998899998888776553
No 353
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.28 E-value=0.0028 Score=59.25 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.++.+|+++|++||||||++..||..+ .| ..++|+|
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 345689999999999999998887652 14 4567776
No 354
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.26 E-value=0.0023 Score=60.52 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.++.+|+++|++||||||++..||..+ |.. +++.|.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 345689999999999999999998776 443 467664
No 355
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.26 E-value=0.016 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA 204 (571)
.+...|+++|++||||||+...|+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345789999999999999997665
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.0024 Score=59.80 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+++|+|++|+||||++..|+..+...|+++..|..|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 479999999999999999999999988988887776643
No 357
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.25 E-value=0.0042 Score=58.26 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
+.+|+|+|+.||||||++..|+..| .|.++..++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 5689999999999999999988776 3677765554
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.24 E-value=0.0041 Score=60.91 Aligned_cols=45 Identities=27% Similarity=0.490 Sum_probs=32.5
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-----CCeEEEEeccCC
Q 008282 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQ-----GKSCMLVAGDVY 222 (571)
Q Consensus 178 ~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~-----G~kVlLVd~D~~ 222 (571)
+.-.++.+|+++|++|+||||++..|+..+..- ..+|.+++.|.+
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 333457899999999999999999998766321 246778887743
No 359
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.022 Score=52.84 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCe
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKS 213 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~k 213 (571)
++++|++|+||||++..++..+...+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 8999999999999999999888765544
No 360
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.21 E-value=0.062 Score=55.64 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=32.3
Q ss_pred CCEEEEE--EcCCCCcHHHHHHHHHHHHHhc------CCeEEEEeccC
Q 008282 182 RPTVILL--AGLQGVGKTTVSAKLANYLKKQ------GKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~i--vG~~GvGKTTtaakLA~~La~~------G~kVlLVd~D~ 221 (571)
.+..+++ +|++|+||||++..++..+... +..++.++|..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 3567788 9999999999999999887653 66788888743
No 361
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.19 E-value=0.031 Score=53.95 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=45.1
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHHHHH------HHHhhhhcCeeEEEEccCCCCC-
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAAL------VTTFNIEIGITGAILTKLDGDS- 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a~~~------~~~f~~~~~i~GVIlNKlD~~~- 336 (571)
..+.+-|+||+|.-.... +.. . .....+.+++|.|.+........ +......--..-+|-||.|...
T Consensus 60 ~~v~l~iwDtaGqe~~~~-l~~----~-~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRS-LIP----S-YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp CEEEEEEECCSCTTTCGG-GHH----H-HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred eEEEEEEEECCCchhhhh-HHH----H-HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 356788999999643211 111 1 12245788888888655333222 1111111112346779999542
Q ss_pred ---ChhHHHHHHHHhCCCe
Q 008282 337 ---RGGAALSVKEVSGKPI 352 (571)
Q Consensus 337 ---~~g~~lsi~~~~g~PI 352 (571)
....+..++...+.+.
T Consensus 134 r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 134 RQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp CCSCHHHHHHHHHHHTCEE
T ss_pred CcccHHHHhhHHHHhCCee
Confidence 2344566777777664
No 362
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.19 E-value=0.0087 Score=64.73 Aligned_cols=81 Identities=16% Similarity=0.086 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeCcchHHH---HHHHHHhhhh---cCe-eEEEEccCCCCC
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEA---AALVTTFNIE---IGI-TGAILTKLDGDS 336 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~gq~a---~~~~~~f~~~---~~i-~GVIlNKlD~~~ 336 (571)
+++.+.|+||||.-..... .....-..+.+++|+|++..... ......+... .++ .-+|+||+|...
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~------~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPL------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp SSCEEEEEEECCCGGGSGG------GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred CCEEEEEEECCCcHHHHHH------HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 5688999999996432111 01112346889999998755322 2222222111 123 458889999653
Q ss_pred ChhHHHHHHHHhCCC
Q 008282 337 RGGAALSVKEVSGKP 351 (571)
Q Consensus 337 ~~g~~lsi~~~~g~P 351 (571)
.. ....+....+.+
T Consensus 438 ~~-~~~~~~~~~~~~ 451 (497)
T 3lvq_E 438 AM-KPHEIQEKLGLT 451 (497)
T ss_dssp CC-CHHHHHHHTTCT
T ss_pred CC-CHHHHHHHhchh
Confidence 32 123344444443
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.19 E-value=0.0049 Score=58.34 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.++.+|+++|++|+||||++..|+..+. .+.+++.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 4568999999999999999988774321 5788999865
No 364
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.18 E-value=0.0046 Score=67.32 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLAN 205 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~ 205 (571)
..|+++|.+||||||+...|..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHC
Confidence 4688999999999999988863
No 365
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.16 E-value=0.011 Score=58.34 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe--ccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA--GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLE 259 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd--~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~ 259 (571)
...+.+++|+-|+||||.+..++..+..+|++|+++. .|. |.+ ..+ ....|+.+...... ...+ .++
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg--~~i---~sr~G~~~~a~~i~-~~~d----i~~ 86 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS--SSF---CTHDRNTMEALPAC-LLRD----VAQ 86 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEES-SGGG----GHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch--HHH---HhhcCCeeEEEecC-CHHH----HHH
Confidence 4579999999999999999999999999999999988 443 322 121 12223332211111 1111 233
Q ss_pred HHHhCCCcEEEEeCCCCCc
Q 008282 260 EAKKKNVDVVIVDTAGRLQ 278 (571)
Q Consensus 260 ~~~~~~~DvIIIDTpG~l~ 278 (571)
.+ .++|+|+||=+-...
T Consensus 87 ~~--~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 87 EA--LGVAVIGIDEGQFFP 103 (234)
T ss_dssp HH--TTCSEEEESSGGGCT
T ss_pred Hh--ccCCEEEEEchhhhh
Confidence 33 679999999886663
No 366
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.0036 Score=58.04 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.|.+|+++|++||||||++..|+..+ |.. +++.|.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RLP--LLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHHHHH
Confidence 46799999999999999999998776 443 56777654
No 367
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.14 E-value=0.0051 Score=67.96 Aligned_cols=42 Identities=36% Similarity=0.596 Sum_probs=38.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.+.+|+++|.+|+||||++..|+..|..+|+++.++|.|..|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 468999999999999999999999999999999999988643
No 368
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.0058 Score=55.54 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-------cCCeEEEEec
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 219 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-------~G~kVlLVd~ 219 (571)
+..++++|++|+||||++..++..+.. .+..+..+++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 446889999999999999999998876 4677776665
No 369
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.14 E-value=0.033 Score=53.91 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCC-eEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGK-SCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~-kVlLVd~D~ 221 (571)
+.+|+|.|+.|+||||.+..|+.+|...|+ .| ++.-.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep 41 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREP 41 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCC
Confidence 458999999999999999999999999998 66 444344
No 370
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.13 E-value=0.003 Score=58.54 Aligned_cols=35 Identities=40% Similarity=0.525 Sum_probs=27.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.+|+++|++||||||++..||..+ |. .+++.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChHH
Confidence 4578999999999999999998766 43 35677754
No 371
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.13 E-value=0.0035 Score=69.66 Aligned_cols=44 Identities=32% Similarity=0.498 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcC-CeEEEEeccCCch
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQG-KSCMLVAGDVYRP 224 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G-~kVlLVd~D~~Rp 224 (571)
+++.+|+|+|.+||||||++..|+..|..+| +.+.++|.|..|.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 4568999999999999999999999999888 8898999886544
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.11 E-value=0.0069 Score=62.13 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=35.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhc-C-CeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQ-G-KSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~-G-~kVlLVd~D~~ 222 (571)
.++.+|+|+|++||||||++..|+..+... | .+|.+|..|.|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 457899999999999999999999888753 5 57999988865
No 373
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.09 E-value=0.018 Score=57.39 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=45.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
++..++++|++|+||||++..+|..+ +.....+++...... .........+..+..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------~~~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK--------------------YVGDGEKLVRALFAVA 109 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS--------------------SCSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc--------------------ccchHHHHHHHHHHHH
Confidence 35679999999999999998888655 455555554221100 0012233444555555
Q ss_pred HhCCCcEEEEeCCCCC
Q 008282 262 KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l 277 (571)
......+++||=+..+
T Consensus 110 ~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSL 125 (297)
T ss_dssp HHTCSEEEEEETGGGT
T ss_pred HHcCCcEEEeccHHHh
Confidence 5567789999976544
No 374
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.08 E-value=0.0004 Score=65.21 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKL 203 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakL 203 (571)
+.-|+++|.+||||||++..|
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSS
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457889999999999998555
No 375
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.08 E-value=0.019 Score=59.17 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.+|+|+||+||||||++..||..+ ...+|++|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 5689999999999999999998654 3568899853
No 376
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.04 E-value=0.0069 Score=58.64 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLV 217 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLV 217 (571)
++.+|+|.|+.|+||||.+..|+.+|..+|++|.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 357899999999999999999999999999999544
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0045 Score=57.28 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=26.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
|.+|+++|++||||||++..|+..+ |. .+++.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 6789999999999999999888765 43 356665
No 378
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.02 E-value=0.014 Score=65.31 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCCcc-----cHHHHHHHHHHHhh-h-CC-ceEEEEEeCc---chHHHHHHHHHhhhhcCeeEEEEccCC
Q 008282 265 NVDVVIVDTAGRLQI-----DKAMMDELKDVKRV-L-NP-TEVLLVVDAM---TGQEAAALVTTFNIEIGITGAILTKLD 333 (571)
Q Consensus 265 ~~DvIIIDTpG~l~~-----d~~l~~eL~~i~~~-~-~p-d~vlLVvda~---~gq~a~~~~~~f~~~~~i~GVIlNKlD 333 (571)
..+++|+|.||.... |......+..+... + .+ .-+++|+++. ..+.+...+..+...-.-+-+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 367999999975432 22222333333333 2 23 3345555553 224666777766654445668999999
Q ss_pred CCC
Q 008282 334 GDS 336 (571)
Q Consensus 334 ~~~ 336 (571)
.-.
T Consensus 226 lv~ 228 (608)
T 3szr_A 226 LVD 228 (608)
T ss_dssp GSS
T ss_pred hcC
Confidence 543
No 379
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.02 E-value=0.0057 Score=62.47 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-hcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La-~~G~kVlLVd~D 220 (571)
+..+++.|++|+|||+++..+|..+. .+|++|.++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 35788999999999999999999999 899999988764
No 380
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.01 E-value=0.026 Score=57.52 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=47.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+++-++++|++|+|||+++..+|..+ +..+..+++.. +. ... .......++..+..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~--------l~--~~~----------~g~~~~~~~~~f~~a 106 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD--------LV--SKW----------MGESEKLVKQLFAMA 106 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH--------HH--TTT----------GGGHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH--------Hh--hcc----------cchHHHHHHHHHHHH
Confidence 45679999999999999999888764 55666665421 10 000 011233445566666
Q ss_pred HhCCCcEEEEeCCCCC
Q 008282 262 KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l 277 (571)
......+|+||=...+
T Consensus 107 ~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 107 RENKPSIIFIDQVDAL 122 (322)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HhcCCeEEEechhhhh
Confidence 6567789999976544
No 381
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.00 E-value=0.0017 Score=61.78 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..-|+++|.+||||||++..|.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999997775
No 382
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.97 E-value=0.0049 Score=57.24 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
++.+++++|++|+||||++..|+.. .+.....++.|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~ 44 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDD 44 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccc
Confidence 4579999999999999999888754 233344666653
No 383
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.96 E-value=0.0054 Score=63.80 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+|+|+|++||||||++..||..+. +.+|++|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 5899999999999999999987653 678999975
No 384
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.92 E-value=0.0054 Score=56.79 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKL 203 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakL 203 (571)
++.+++++|++|+||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999763
No 385
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.89 E-value=0.019 Score=60.86 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA 204 (571)
.|+++|.+||||||+...|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~ 21 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAAT 21 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998876
No 386
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.86 E-value=0.012 Score=57.59 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~ 222 (571)
.++.+|+|.|..|+||||.+..|+..|.. .|++|.++.-.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 45789999999999999999999999998 9999976454444
No 387
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.85 E-value=0.0043 Score=58.02 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=28.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.++.+|+++|++||||||++..||.. |. .++++|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccHH
Confidence 35789999999999999999887753 54 46788754
No 388
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.83 E-value=0.005 Score=55.82 Aligned_cols=36 Identities=33% Similarity=0.434 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
.+|+++|++||||||++..|+..+ |+ -+++.|.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~~~~ 37 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSSFEL 37 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eeecCccccc
Confidence 378999999999999998888665 33 3578886643
No 389
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.83 E-value=0.018 Score=54.86 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
.|+|-|.-||||||.+..|+.+|.++|++|.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4778899999999999999999999999996544
No 390
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.82 E-value=0.0069 Score=55.10 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh-------cCCeEEEEec
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK-------QGKSCMLVAG 219 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~-------~G~kVlLVd~ 219 (571)
+..++++|++|+||||++..++..+.. .+..+..+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 346789999999999999999998876 3666766654
No 391
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=95.81 E-value=0.011 Score=63.96 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=36.7
Q ss_pred CCEEEEEEcC-C---CCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHH
Q 008282 182 RPTVILLAGL-Q---GVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAI 227 (571)
Q Consensus 182 ~~~VI~ivG~-~---GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~ 227 (571)
..++|++++. + |.||||++.+||..|++.|+||+++ ..+|...
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~ 102 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLG 102 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSH
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCcc
Confidence 4688999866 8 9999999999999999999999988 5666543
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.75 E-value=0.0037 Score=57.92 Aligned_cols=33 Identities=42% Similarity=0.641 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+|+++|++||||||++..||..| |.. +++.|.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCchH
Confidence 68999999999999998888765 433 6787754
No 393
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.034 Score=59.52 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=45.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
..|+=|++.||+|+|||+++..+|..+ |..+..+++...-.. ........++..+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~--------------------~~Ge~e~~ir~lF~~ 260 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK--------------------YLGEGPRMVRDVFRL 260 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCS--------------------SCSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhcc--------------------ccchhHHHHHHHHHH
Confidence 356789999999999999999998765 556665554311100 011223445666776
Q ss_pred HHhCCCcEEEEeC
Q 008282 261 AKKKNVDVVIVDT 273 (571)
Q Consensus 261 ~~~~~~DvIIIDT 273 (571)
++....-+++||-
T Consensus 261 A~~~aP~IifiDE 273 (428)
T 4b4t_K 261 ARENAPSIIFIDE 273 (428)
T ss_dssp HHHTCSEEEEEEC
T ss_pred HHHcCCCeeechh
Confidence 6656667888885
No 394
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.70 E-value=0.051 Score=52.61 Aligned_cols=33 Identities=42% Similarity=0.470 Sum_probs=25.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
..-|.++|.-||||||++..| ++.|.. ++|+|.
T Consensus 9 ~~~iglTGgigsGKStv~~~l----~~~g~~--vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLF----AARGAS--LVDTDL 41 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHH----HHTTCE--EEEHHH
T ss_pred eeEEEEECCCCCCHHHHHHHH----HHCCCc--EEECcH
Confidence 457999999999999999555 445655 568885
No 395
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.69 E-value=0.0075 Score=56.79 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
..|.+|+|+|++||||||++..|+..+ |.. ++++|
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 356789999999999999999998776 444 46664
No 396
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.66 E-value=0.0066 Score=56.06 Aligned_cols=34 Identities=38% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+.+|+++|++|+||||++..|+..+ |. .+++.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 34578999999999999999988766 33 345555
No 397
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.65 E-value=0.041 Score=57.10 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=45.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+++-|+|+|++|+|||+++..+|..+ +..+..+++. .+ .... + ......++..+..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~--------~l--~~~~-----~-----g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS--------DL--VSKW-----M-----GESEKLVKQLFAMA 139 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH--------HH--HSCC-------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH--------HH--hhhh-----c-----chHHHHHHHHHHHH
Confidence 34568899999999999999998876 5566555432 11 0100 0 01123344555555
Q ss_pred HhCCCcEEEEeCCCCC
Q 008282 262 KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l 277 (571)
......+||||=...+
T Consensus 140 ~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 140 RENKPSIIFIDQVDAL 155 (355)
T ss_dssp HHTSSEEEEEECGGGG
T ss_pred HHcCCeEEEEechHhh
Confidence 5567789999965544
No 398
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.65 E-value=0.0071 Score=55.85 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+.+|+++|++||||||++..||..+ |. .++++|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 5689999999999999999998765 43 356664
No 399
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.62 E-value=0.014 Score=59.22 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 008282 184 TVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA 204 (571)
.-|+++|.+||||||+...|.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~ 24 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF 24 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999997664
No 400
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.61 E-value=0.0092 Score=65.38 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh-c-CCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK-Q-GKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~-~-G~kVlLVd~D~ 221 (571)
.+.+|+|+|..||||||++..||..|.. . |+.+.++|.|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4579999999999999999999999986 6 47888999997
No 401
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.039 Score=59.26 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=46.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
.+|+=|++.||+|+|||+++..+|..+ |.....+++...-.. ........++..+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk--------------------~~Gese~~ir~~F~~ 269 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDK--------------------YIGESARIIREMFAY 269 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCS--------------------SSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhccc--------------------cchHHHHHHHHHHHH
Confidence 356789999999999999998888665 566666654321100 011223445666677
Q ss_pred HHhCCCcEEEEeCC
Q 008282 261 AKKKNVDVVIVDTA 274 (571)
Q Consensus 261 ~~~~~~DvIIIDTp 274 (571)
+.....-+|+||-.
T Consensus 270 A~~~~P~IifiDEi 283 (437)
T 4b4t_L 270 AKEHEPCIIFMDEV 283 (437)
T ss_dssp HHHSCSEEEEEECC
T ss_pred HHhcCCceeeeecc
Confidence 76667778888853
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.033 Score=54.38 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
|.-++++|++|+||||++..||..+ +..+..+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 4458899999999999999998765 445555554
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.56 E-value=0.0087 Score=59.18 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+|+++|++||||||++..||..+ | ..+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 478999999999999999998765 3 346788764
No 404
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.54 E-value=0.0047 Score=57.79 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+++++++|++|+||||++..|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35799999999999999999987765
No 405
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.031 Score=57.03 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
|. ++|+|++|+||||++..||..+.
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 45 89999999999999999998653
No 406
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.53 E-value=0.021 Score=56.45 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
.+..++++|++|+|||+++..+|..+ +..+..++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 45689999999999999999998763 55555444
No 407
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.53 E-value=0.034 Score=60.76 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH-HHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA-NYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA-~~La~~G~kVlLVd~D~ 221 (571)
+..+++++|++|+||||++..++ ..+...+...++++...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 35699999999999999999853 33444355566777654
No 408
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.52 E-value=0.0059 Score=58.27 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
++.+|+++|++||||||++..|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999998887654
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.51 E-value=0.0059 Score=61.22 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCch
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRP 224 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp 224 (571)
|.+|+++|++||||||++..|+..+ ....+++.|.+|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHH
Confidence 4689999999999999998887632 1356778886654
No 410
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.51 E-value=0.035 Score=62.01 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----cCCeEEEEe
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVA 218 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~----~G~kVlLVd 218 (571)
++++++|++|+||||+++.+...|.+ .|.+|++++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A 203 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe
Confidence 37899999999999999999988874 466786554
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.50 E-value=0.0045 Score=57.00 Aligned_cols=30 Identities=37% Similarity=0.481 Sum_probs=19.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeE
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSC 214 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kV 214 (571)
++.+|+|+|.+||||||++..|+..| |..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~~ 33 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL---PGSF 33 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS---TTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCCE
Confidence 45789999999999999998887654 4554
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.48 E-value=0.0091 Score=62.05 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
++.+|+|+|++||||||++..||..+ ..-+|++|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 45799999999999999999888543 4568999964
No 413
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.036 Score=59.48 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=45.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
..|+=|++.||+|+|||++|..+|..+ |.....+++...-.. ........++..+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~--------------------~vGese~~ir~lF~~ 269 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM--------------------YIGEGAKLVRDAFAL 269 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS--------------------CSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc--------------------ccchHHHHHHHHHHH
Confidence 357789999999999999998888655 566666654321100 011223445566666
Q ss_pred HHhCCCcEEEEeC
Q 008282 261 AKKKNVDVVIVDT 273 (571)
Q Consensus 261 ~~~~~~DvIIIDT 273 (571)
+.....-+|+||-
T Consensus 270 A~~~aP~IifiDE 282 (434)
T 4b4t_M 270 AKEKAPTIIFIDE 282 (434)
T ss_dssp HHHHCSEEEEEEC
T ss_pred HHhcCCeEEeecc
Confidence 6655667888885
No 414
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.43 E-value=0.0065 Score=55.44 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
+.+|+++|++||||||++..||..+ | ..++++|.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d~ 37 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---C--CCEEeccH
Confidence 3479999999999999998887654 3 24677764
No 415
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.43 E-value=0.092 Score=49.09 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=24.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQG 211 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G 211 (571)
+..++|+|++|+||||++..++..+...+
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 45889999999999999999998776443
No 416
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.43 E-value=0.0083 Score=56.62 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.+|+++|++||||||++..|+. .|.. ++|+|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 5899999999999999987764 3544 567774
No 417
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.40 E-value=0.0097 Score=56.93 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
++..|+|+|++||||||++..||..| |. .++++|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 45689999999999999999998766 33 356663
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.38 E-value=0.0083 Score=55.19 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+|+++|++||||||++..||..| | ..+++.|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccHH
Confidence 58899999999999999998765 3 346777743
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.38 E-value=0.0084 Score=54.42 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+|+|+|.+||||||++..|+..+ |.. ++++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECcHH
Confidence 58999999999999998888766 443 5677644
No 420
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.38 E-value=0.15 Score=51.27 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
.|.++++.|++|+||||++..+|..+ +..+..+++...+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 35678889999999999998888665 5677777765444
No 421
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.38 E-value=0.036 Score=58.95 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=49.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC---CchhHHHH-HHHhhhccCCceecCC-----CCCCHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV---YRPAAIDQ-LVILGEQVGVPVYTAG-----TEVKPSQI 253 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~---~Rp~a~dq-L~~~~~~~gv~v~~~~-----~~~~p~~v 253 (571)
+.+|+|+|++||||||++..||..+. ..+|.+|. ||.-.+-. --...+..|++.+..+ ...+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F 76 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRF 76 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHH
Confidence 46899999999999999999998764 24788885 44211000 0022345566654332 22333333
Q ss_pred ---HHHHHHHHHhCCCcEEEE
Q 008282 254 ---AKQGLEEAKKKNVDVVIV 271 (571)
Q Consensus 254 ---~~~~l~~~~~~~~DvIII 271 (571)
+...++.+...+.-.||+
T Consensus 77 ~~~a~~~i~~i~~~g~~pilV 97 (409)
T 3eph_A 77 ETECMNAIEDIHRRGKIPIVV 97 (409)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 355566665455444444
No 422
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.37 E-value=0.0066 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
++.+|+|+|++||||||++..|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998766
No 423
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.36 E-value=0.0082 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
+.+++++|++||||||++..|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999988755
No 424
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.33 E-value=0.009 Score=55.99 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
++.+++++|++||||||++..|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999998888654
No 425
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.31 E-value=0.011 Score=60.97 Aligned_cols=35 Identities=37% Similarity=0.599 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+.+|+++|++||||||++..||..+ ...+|++|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 4689999999999999999988654 3578888854
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.31 E-value=0.02 Score=58.89 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.|.+|+|+||+||||||++..||..+ ..-+|.+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 46799999999999999999998664 356888885
No 427
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.26 E-value=0.032 Score=62.38 Aligned_cols=54 Identities=31% Similarity=0.387 Sum_probs=38.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCce
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v 241 (571)
+.++.|++|+||||+++.++..+.+ .+.+|++++ +...+++++.......|+++
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a---~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA---PSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE---SSHHHHHHHHHHHHTTTCCE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe---CcHHHHHHHHHHHHhcCCeE
Confidence 6788999999999999999998887 678886655 33455566544333334443
No 428
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.26 E-value=0.011 Score=57.64 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
+|.+|+++|++||||||++..|+..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998766
No 429
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.26 E-value=0.045 Score=58.42 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
..+++++|++|+||||+...|+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3478999999999999998775
No 430
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.25 E-value=0.012 Score=57.58 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc----CCeEEEE
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ----GKSCMLV 217 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~----G~kVlLV 217 (571)
++.+|+|.|+.||||||.+..|+.+|... |++|.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 45689999999999999999999999988 9998543
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.24 E-value=0.0093 Score=57.14 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+.+|+|+|++||||||++..||..|. . ..+++|
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~--~~i~~d 37 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---L--AHISAG 37 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---C--EECCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---C--ceecHH
Confidence 456899999999999999999987763 2 355654
No 432
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.23 E-value=0.014 Score=57.27 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
+|.+|+|+|++||||||++..|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998665
No 433
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.052 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQ 210 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~ 210 (571)
++|+|++|+||||++..++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 8999999999999999999887643
No 434
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.19 E-value=0.0097 Score=55.96 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
+|+++|++||||||++..|+. + | +.++++|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 689999999999999988876 3 5 44567664
No 435
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.18 E-value=0.015 Score=55.41 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.+.+|+|+|..||||||++..|+. .|. .++++|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 367999999999999999988864 354 4677763
No 436
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.17 E-value=0.051 Score=54.38 Aligned_cols=54 Identities=7% Similarity=-0.026 Sum_probs=44.4
Q ss_pred HHHHHHhcCCcccccccCCCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 163 DELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 163 ~eL~~llg~~~~~l~~~~~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
..|.++++++.. +.+++++.|.+|+||||++..++..-.++|.+++++..+--.
T Consensus 8 ~~LD~~l~GGl~-------~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~ 61 (260)
T 3bs4_A 8 EELDREIGKIKK-------HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL 61 (260)
T ss_dssp HHHHHHHCCBCT-------TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH
T ss_pred HHHHHHhCCCCC-------CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH
Confidence 357788887643 457899999999999999999998888899999999987443
No 437
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.14 E-value=0.039 Score=49.35 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
-|++.|++|+|||+++..++......+..+. ++|..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 3789999999999999988876666666666 76653
No 438
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.13 E-value=0.0091 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
++.+|+++|++||||||++..|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999998887665
No 439
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.13 E-value=0.043 Score=60.22 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHH--hcC--CeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLK--KQG--KSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La--~~G--~kVlLVd~D~~ 222 (571)
.+++|+|+|++|+||||++..++.... ... ..|..++++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 468999999999999999998875432 222 24777776654
No 440
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.11 E-value=0.033 Score=57.01 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.1
Q ss_pred ccCCCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 178 FAKSRPTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 178 ~~~~~~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+.-.+..+++++|++|+||||++..|+..+.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3334456999999999999999987775543
No 441
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.074 Score=56.95 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=45.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
..|+=|++.||+|+|||++|..+|..+ |.....+++...-. ....+....++..+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s--------------------k~vGesek~ir~lF~~ 270 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ--------------------KYLGDGPRLCRQIFKV 270 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC--------------------SSSSHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh--------------------ccCchHHHHHHHHHHH
Confidence 346789999999999999998888665 45555555321100 0011234455667777
Q ss_pred HHhCCCcEEEEeC
Q 008282 261 AKKKNVDVVIVDT 273 (571)
Q Consensus 261 ~~~~~~DvIIIDT 273 (571)
++....-+|+||-
T Consensus 271 Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 271 AGENAPSIVFIDE 283 (437)
T ss_dssp HHHTCSEEEEEEE
T ss_pred HHhcCCcEEEEeh
Confidence 7666667888874
No 442
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.07 E-value=0.014 Score=54.33 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+|+|+|++||||||++..|+..|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999987763
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.07 E-value=0.014 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=26.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
..+|+++|.+||||||++..||..| |.. ++|+|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 4589999999999999998888665 444 567764
No 444
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.06 E-value=0.025 Score=64.58 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
..++|+|++|+|||+++..||..+...+..+..++|..|
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 479999999999999999999998777788888887544
No 445
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.06 E-value=0.013 Score=55.78 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=25.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+.+|+++|++||||||++..|+..+ |. .++++|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~---g~--~~~d~g 37 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL---QW--HLLDSG 37 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CC--CcccCc
Confidence 3589999999999999998887654 33 345654
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.04 E-value=0.013 Score=56.18 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=26.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
+..|+|+|++||||||++..||..| |.. ++++|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~~~--~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---GLA--HLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence 4578999999999999999998877 443 45554
No 447
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.03 E-value=0.051 Score=56.79 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.++.++|+|++|+|||+++..+|.. .|..+..++|........ ......+...+..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~~--------------------g~~~~~~~~~~~~a 203 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKYV--------------------GEGEKLVRALFAVA 203 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhcccc--------------------chHHHHHHHHHHHH
Confidence 3567999999999999999888654 367777777643322110 00122334455555
Q ss_pred HhCCCcEEEEeCCCCC
Q 008282 262 KKKNVDVVIVDTAGRL 277 (571)
Q Consensus 262 ~~~~~DvIIIDTpG~l 277 (571)
......+||||=...+
T Consensus 204 ~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSL 219 (389)
T ss_dssp HHSSSEEEEEETGGGG
T ss_pred HhcCCeEEEEECchhh
Confidence 5556689999976544
No 448
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.03 E-value=0.012 Score=53.48 Aligned_cols=34 Identities=38% Similarity=0.618 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
.+|+++|++||||||++..|+..| |. .++++|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEcccHH
Confidence 368999999999999998888766 43 36677743
No 449
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.99 E-value=0.017 Score=62.32 Aligned_cols=43 Identities=37% Similarity=0.519 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
..+.+|+++|.+|+||||++.+|+..+...+..+..+..|.+|
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 3567899999999999999999999988777776666655443
No 450
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.95 E-value=0.11 Score=56.20 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAK 262 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~ 262 (571)
|+-++++|++|+||||++..+|..+ +..+..+++..+-.. + ........+..+..+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~----------------~----~g~~~~~~r~lf~~A~ 105 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL----------------F----VGVGAARVRDLFAQAK 105 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----------------C----TTHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----------------H----hcccHHHHHHHHHHHH
Confidence 4458899999999999999888654 555555554322110 0 0012233456666666
Q ss_pred hCCCcEEEEeCCCC
Q 008282 263 KKNVDVVIVDTAGR 276 (571)
Q Consensus 263 ~~~~DvIIIDTpG~ 276 (571)
.....+||||=+..
T Consensus 106 ~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 106 AHAPCIVFIDEIDA 119 (476)
T ss_dssp HTCSEEEEEETGGG
T ss_pred hcCCCEEEEechhh
Confidence 66788999997643
No 451
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.93 E-value=0.12 Score=48.88 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc---CCeEEEEeccCCchh
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQ---GKSCMLVAGDVYRPA 225 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~---G~kVlLVd~D~~Rp~ 225 (571)
+++.+++|+|||.+....+...... +.+++++. +.+.-
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~--Pt~~L 94 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC--HTREL 94 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC--SCHHH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe--CCHHH
Confidence 7788999999998776555444222 34776666 44443
No 452
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.052 Score=57.65 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+|+=|++.||+|+|||++|..+|..+ |.....|++...-.. ........++..+..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk--------------------~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK--------------------YIGEGSRMVRELFVMA 237 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS--------------------STTHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc--------------------ccchHHHHHHHHHHHH
Confidence 46679999999999999998888655 456655554211100 0112344556777777
Q ss_pred HhCCCcEEEEeC
Q 008282 262 KKKNVDVVIVDT 273 (571)
Q Consensus 262 ~~~~~DvIIIDT 273 (571)
+....-+|+||=
T Consensus 238 r~~aP~IIFiDE 249 (405)
T 4b4t_J 238 REHAPSIIFMDE 249 (405)
T ss_dssp HHTCSEEEEEES
T ss_pred HHhCCceEeeec
Confidence 766777888885
No 453
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.91 E-value=0.013 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
+++++|+|++|+||||++..|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45799999999999999999887653
No 454
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.84 E-value=0.047 Score=62.99 Aligned_cols=54 Identities=31% Similarity=0.387 Sum_probs=38.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCeEEEEeccCCchhHHHHHHHhhhccCCce
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKK-QGKSCMLVAGDVYRPAAIDQLVILGEQVGVPV 241 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~-~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v 241 (571)
+.++.|++|+||||++..++..+.+ .+.+|++++ +...|++++.......|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a---~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA---PSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE---SSHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc---CcHHHHHHHHHHHHHhCcce
Confidence 6788999999999999999998887 578886655 33455566554333344443
No 455
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.073 Score=57.49 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
+|+=|++.||+|+|||+++..+|..+ |.....+++...-. .........++..+..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s--------------------k~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ--------------------KYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC--------------------CSSSHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc--------------------ccCCHHHHHHHHHHHHH
Confidence 57789999999999999998888665 45565555421110 00112334556777777
Q ss_pred HhCCCcEEEEeCC
Q 008282 262 KKKNVDVVIVDTA 274 (571)
Q Consensus 262 ~~~~~DvIIIDTp 274 (571)
+....-+|+||-.
T Consensus 299 r~~aP~IIfiDEi 311 (467)
T 4b4t_H 299 RTKKACIIFFDEI 311 (467)
T ss_dssp HHTCSEEEEEECC
T ss_pred HhcCCceEeeccc
Confidence 7667778998853
No 456
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=94.79 E-value=0.24 Score=49.30 Aligned_cols=166 Identities=13% Similarity=0.206 Sum_probs=91.2
Q ss_pred CEEEEEEcC--CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc---hhHHHH------------------HHHhhhccCC
Q 008282 183 PTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR---PAAIDQ------------------LVILGEQVGV 239 (571)
Q Consensus 183 ~~VI~ivG~--~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R---p~a~dq------------------L~~~~~~~gv 239 (571)
.+.|+++|- +|.||-.+++.|+..|+.+|++|..+-.|+|= |+.... |-.|-+-+++
T Consensus 23 mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl~~ 102 (294)
T 2c5m_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 102 (294)
T ss_dssp CEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC---------------------------------
T ss_pred eEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCCCCccccceEEEecCCccccccccchhhhcCC
Confidence 478888854 99999999999999999999999999999973 332111 1111111111
Q ss_pred ceecCC----------------------C--CCCH--HHHHHHHHHHHHh-------CCCcEEEEeCCCCCcc--cHHHH
Q 008282 240 PVYTAG----------------------T--EVKP--SQIAKQGLEEAKK-------KNVDVVIVDTAGRLQI--DKAMM 284 (571)
Q Consensus 240 ~v~~~~----------------------~--~~~p--~~v~~~~l~~~~~-------~~~DvIIIDTpG~l~~--d~~l~ 284 (571)
..-... . ..-| .+.+++.+..+.. .++|++||+-.|-..+ ...++
T Consensus 103 ~lt~~nNiTtGkIY~~VI~KERrGdYLGkTVQVIPHiTdeIk~~I~~~a~~pvd~~~~~~Dv~IiEiGGTVGDIES~PFl 182 (294)
T 2c5m_A 103 RLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFI 182 (294)
T ss_dssp --CCTTEEEHHHHHHHHHHHHHTSCSCSSCCCTTTHHHHHHHHHHHHHTTCC------CCSEEEEEECSCTTCSTTHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCCcCCceeEEcCCchHHHHHHHHHHhcCCccccCCCCCEEEEEeCCcchhhcccHHH
Confidence 100000 0 0001 1223444554432 5799999997666543 34566
Q ss_pred HHHHHHHhhhCCceEEEE-E---e--Ccch-------HHHHHHHHHhhhhcCee-EEEEccCCCCCChhHHHHHHHHhCC
Q 008282 285 DELKDVKRVLNPTEVLLV-V---D--AMTG-------QEAAALVTTFNIEIGIT-GAILTKLDGDSRGGAALSVKEVSGK 350 (571)
Q Consensus 285 ~eL~~i~~~~~pd~vlLV-v---d--a~~g-------q~a~~~~~~f~~~~~i~-GVIlNKlD~~~~~g~~lsi~~~~g~ 350 (571)
+++.++..-+....++++ + . ..++ |..+..++ .+++. -+|+-+.+..-....-..++..+++
T Consensus 183 EAiRQ~~~~~g~~n~~~iHvtlVP~i~~~gE~KTKPTQhSVk~Lr----~~Gi~PDiivcRse~~l~~~~k~KIalfc~V 258 (294)
T 2c5m_A 183 EAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELR----GLGLSPDLVVCRCSNPLDTSVKEKISMFCHV 258 (294)
T ss_dssp HHHHTTTTTSCTTTEEEEEEEECCCCTTTCSCCCHHHHHHHHHHH----HTTCCCSEEEEECSSCCCTTHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCCcHHHHHHHH----HcCCCCCEEEEecCCCCCHHHHHHHHHhcCC
Confidence 666666665655555443 1 1 1112 44444333 34442 3667677765555555566666777
Q ss_pred Ce
Q 008282 351 PI 352 (571)
Q Consensus 351 PI 352 (571)
|.
T Consensus 259 ~~ 260 (294)
T 2c5m_A 259 EP 260 (294)
T ss_dssp CC
T ss_pred CH
Confidence 65
No 457
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.76 E-value=0.045 Score=55.93 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcC
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQG 211 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G 211 (571)
++|+|++|+||||++..+|..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 88999999999999999998876443
No 458
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.76 E-value=0.018 Score=55.20 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=29.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHH-----hcC-CeEEEEecc
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLK-----KQG-KSCMLVAGD 220 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La-----~~G-~kVlLVd~D 220 (571)
+.+++++|++|+|||+.+..++..+. +.| ++|.+..+|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 45889999999999999988766554 567 666666656
No 459
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.70 E-value=0.016 Score=54.25 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+|+++|++||||||++..||..| | +.+++.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceeccchH
Confidence 89999999999999999888765 3 456777744
No 460
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.68 E-value=0.051 Score=56.14 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
.+..++|+|++|+|||+++..||..+ +.....+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 34578999999999999999998776 556655554
No 461
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.67 E-value=0.067 Score=56.72 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
+..++++|.+||||||+...|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999998886
No 462
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.67 E-value=0.22 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKK 209 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~ 209 (571)
+..++|+|++|+||||++..+|..+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 568999999999999999999988763
No 463
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.67 E-value=0.11 Score=61.35 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHh----cCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKK----QGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~----~G~kVlLVd~D~ 221 (571)
.+++|.|+|++|+||||+|..++..... ....|..|+...
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 4689999999999999999988865432 123566777644
No 464
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=94.66 E-value=0.55 Score=46.96 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=38.0
Q ss_pred CCEEEEEEcC--CCCcHHHHHHHHHHHHHhcCCeEEEEeccCCc
Q 008282 182 RPTVILLAGL--QGVGKTTVSAKLANYLKKQGKSCMLVAGDVYR 223 (571)
Q Consensus 182 ~~~VI~ivG~--~GvGKTTtaakLA~~La~~G~kVlLVd~D~~R 223 (571)
..+.|+++|- +|.||=.+++.|+..|+.+|++|.++-.|+|=
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccce
Confidence 3578888854 99999999999999999999999999999983
No 465
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.65 E-value=0.02 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~L 207 (571)
.|+|+|++||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998887665
No 466
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.63 E-value=0.029 Score=55.77 Aligned_cols=37 Identities=32% Similarity=0.556 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
+..++|+|++|+|||+++..+|..+ +..+..+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 4568899999999999999998877 567777777544
No 467
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.60 E-value=0.034 Score=56.11 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
.++.++++|++|+||||++..||..+ +.....++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 45689999999999999999888765 44554444
No 468
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.59 E-value=0.12 Score=59.35 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-hc--CCeEEEEeccCCchhHHHHHHHhhhccCCceec-----CC------C----
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLK-KQ--GKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYT-----AG------T---- 246 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La-~~--G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~-----~~------~---- 246 (571)
+++++|++|+||||++..++.... .. |.+++++. +.|..+.+....++...++.+.. .. .
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~--P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I 188 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ--PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTIL 188 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE--SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC--chHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCE
Confidence 789999999999996665543322 12 55666554 66666554444444443332210 00 0
Q ss_pred -CCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-CcccHHHHHHHHHHHhhhCCceEEEEEeCcc
Q 008282 247 -EVKPSQIAKQGLEEAKKKNVDVVIVDTAGR-LQIDKAMMDELKDVKRVLNPTEVLLVVDAMT 307 (571)
Q Consensus 247 -~~~p~~v~~~~l~~~~~~~~DvIIIDTpG~-l~~d~~l~~eL~~i~~~~~pd~vlLVvda~~ 307 (571)
..++..+.+..+......++++||||=+-. .-....++.-+..+.... ++.-++++.|+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~ 250 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATL 250 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccc
Confidence 122444444444333346899999999863 222222333344444332 455566666654
No 469
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.56 E-value=0.079 Score=51.61 Aligned_cols=87 Identities=20% Similarity=0.088 Sum_probs=47.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCc-eecCCCC--------CCHHHHHHH
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVP-VYTAGTE--------VKPSQIAKQ 256 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~-v~~~~~~--------~~p~~v~~~ 256 (571)
+++++++|+|||.++..++..+ +.+++++. +.+. ..+|+.......++. +...... ....+.+..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~--P~~~-L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~ 184 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV--PTLA-LAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYV 184 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE--SSHH-HHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe--CCHH-HHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHh
Confidence 7788999999999987776543 67777765 3333 333433222224444 2211100 001122222
Q ss_pred HHHHHHhCCCcEEEEeCCCCCcc
Q 008282 257 GLEEAKKKNVDVVIVDTAGRLQI 279 (571)
Q Consensus 257 ~l~~~~~~~~DvIIIDTpG~l~~ 279 (571)
....+ ...+++||||=+..+..
T Consensus 185 ~~~~~-~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 185 NAEKL-GNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp THHHH-TTTCSEEEEECSSCCCT
T ss_pred hHHHh-cccCCEEEEECCccCCC
Confidence 23333 25689999998877653
No 470
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.56 E-value=0.024 Score=54.88 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEecc
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGD 220 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D 220 (571)
.+..|+|+|++||||||++..||..| |. .++++|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF---CV--CHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CC--ceecHH
Confidence 35689999999999999999999876 33 456654
No 471
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.53 E-value=0.015 Score=55.98 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
.++.+++|+|++|+||||++..|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999998766
No 472
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.52 E-value=0.033 Score=59.67 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
+++-++|+|++|+|||+++..+|..+ .+..+..+++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 45789999999999999999988765 2455655554
No 473
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.51 E-value=0.02 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
++++|+|+|++|+||||++..|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999998887654
No 474
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.48 E-value=0.022 Score=52.91 Aligned_cols=34 Identities=32% Similarity=0.636 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
.+++++|++|+||||++..|+. ..+..+ .++.|.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~~-~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNSA-YIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSEE-EEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCeE-EEcccc
Confidence 5889999999999999998875 222233 566654
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.47 E-value=0.27 Score=48.17 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCch
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYRP 224 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~Rp 224 (571)
.-+.|.|++||||||.+..|+..| |.. .+++ |.+|.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~---g~~--~is~gdllR~ 45 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF---GIP--QISTGDMLRA 45 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCC--EECHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh---CCC--eeechHHHHH
Confidence 358899999999999999998766 443 3444 66654
No 476
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.45 E-value=0.12 Score=58.89 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCC
Q 008282 183 PTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVY 222 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~ 222 (571)
...++|+|++|+|||+++..||..+ |..+..+++..|
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~ 524 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEY 524 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGC
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhh
Confidence 3579999999999999999999887 567777776544
No 477
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.43 E-value=0.13 Score=56.24 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLAN 205 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~ 205 (571)
.+++|.|+|++|+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999988774
No 478
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.41 E-value=0.012 Score=56.73 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=16.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH-HHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLA-NYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA-~~L 207 (571)
++.+++++|++|+||||++..|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45699999999999999998887 654
No 479
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.40 E-value=0.22 Score=47.69 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH-HH------hcCCeEEEEeccCCchhH
Q 008282 185 VILLAGLQGVGKTTVSAKLANY-LK------KQGKSCMLVAGDVYRPAA 226 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~-La------~~G~kVlLVd~D~~Rp~a 226 (571)
.+++.+++|+|||++....+.. +. ..|.+++++. +.|.-+
T Consensus 64 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~--Pt~~L~ 110 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS--PTRELA 110 (236)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC--SSHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe--CCHHHH
Confidence 3778899999999876554432 32 2467787776 555444
No 480
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.36 E-value=0.077 Score=57.69 Aligned_cols=70 Identities=27% Similarity=0.392 Sum_probs=44.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
.+.-++|+|++|+|||+++..+|..+ +..+..++|..+. ... .......++..+..+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~----------~~~----------~g~~~~~~~~~f~~A 293 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----------SKL----------AGESESNLRKAFEEA 293 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHH----------TSC----------TTHHHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhh----------hhh----------cchhHHHHHHHHHHH
Confidence 35679999999999999998887654 6667666652110 000 011223345566666
Q ss_pred HhCCCcEEEEeCC
Q 008282 262 KKKNVDVVIVDTA 274 (571)
Q Consensus 262 ~~~~~DvIIIDTp 274 (571)
......+++||=.
T Consensus 294 ~~~~p~iLfLDEI 306 (489)
T 3hu3_A 294 EKNAPAIIFIDEL 306 (489)
T ss_dssp HHTCSEEEEEESH
T ss_pred HhcCCcEEEecch
Confidence 6566779999964
No 481
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.36 E-value=0.12 Score=55.47 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEA 261 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~ 261 (571)
..++.++.|.+|+||||++.+++.. .++++++ .+..+.+.++.-....+.+.-. ..... ....++...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlT---pT~~aa~~l~~kl~~~~~~~~~-~~~V~---T~dsfL~~~ 227 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF-----EEDLILV---PGRQAAEMIRRRANASGIIVAT-KDNVR---TVDSFLMNY 227 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEE---SCHHHHHHHHHHHTTTSCCCCC-TTTEE---EHHHHHHTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEe---CCHHHHHHHHHHhhhcCccccc-cceEE---EeHHhhcCC
Confidence 4579999999999999999887632 4556665 3333344444322221221100 00000 011222111
Q ss_pred HhC---CCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCceEEEEEeC
Q 008282 262 KKK---NVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDA 305 (571)
Q Consensus 262 ~~~---~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd~vlLVvda 305 (571)
... .+|++|||=....+. ..+ ..+...+.+..++++-|.
T Consensus 228 ~~~~~~~~d~liiDE~sm~~~--~~l---~~l~~~~~~~~vilvGD~ 269 (446)
T 3vkw_A 228 GKGARCQFKRLFIDEGLMLHT--GCV---NFLVEMSLCDIAYVYGDT 269 (446)
T ss_dssp TSSCCCCCSEEEEETGGGSCH--HHH---HHHHHHTTCSEEEEEECT
T ss_pred CCCCCCcCCEEEEeCcccCCH--HHH---HHHHHhCCCCEEEEecCc
Confidence 111 289999999987752 333 233444566788888886
No 482
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.35 E-value=0.032 Score=53.11 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG 219 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~ 219 (571)
.|+|+|++||||||++..|+..+ |..+ +++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQ--IST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCE--EEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeE--EeH
Confidence 47899999999999999998766 5443 454
No 483
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.34 E-value=0.23 Score=46.12 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH-H-----hcCCeEEEEeccCCchh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYL-K-----KQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~L-a-----~~G~kVlLVd~D~~Rp~ 225 (571)
-+++.+++|+|||.+....+... . ..+.+++++. +.|.-
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~--P~~~L 84 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT--PTREL 84 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC--SSHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE--CCHHH
Confidence 37788999999998765544333 2 2356776665 44443
No 484
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.34 E-value=0.065 Score=55.18 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEEAKK 263 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~~~~ 263 (571)
.+++++|++|+||||++..|+..+......|.+-+.+.+.... +.. .+.++. +.... .+.++..+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~------~~~--~i~~~~-ggg~~----~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH------HKN--YTQLFF-GGNIT----SADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS------CSS--EEEEEC-BTTBC----HHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc------chh--EEEEEe-CCChh----HHHHHHHHhh
Confidence 4799999999999999988887765444455443333221110 000 111111 11122 2334444445
Q ss_pred CCCcEEEEeCCCCCcccHHHHHHHHHHHhhhCCc-eEEEEEeCcchHHHHHH
Q 008282 264 KNVDVVIVDTAGRLQIDKAMMDELKDVKRVLNPT-EVLLVVDAMTGQEAAAL 314 (571)
Q Consensus 264 ~~~DvIIIDTpG~l~~d~~l~~eL~~i~~~~~pd-~vlLVvda~~gq~a~~~ 314 (571)
.+.|++|+|=|-.. +....+..+. ... .++++..+....+..+.
T Consensus 239 ~~p~ilildE~~~~----e~~~~l~~~~---~g~~tvi~t~H~~~~~~~~dr 283 (330)
T 2pt7_A 239 MRPDRIILGELRSS----EAYDFYNVLC---SGHKGTLTTLHAGSSEEAFIR 283 (330)
T ss_dssp SCCSEEEECCCCST----HHHHHHHHHH---TTCCCEEEEEECSSHHHHHHH
T ss_pred hCCCEEEEcCCChH----HHHHHHHHHh---cCCCEEEEEEcccHHHHHhhh
Confidence 78999999987652 2233333222 222 35666666544443333
No 485
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.31 E-value=0.18 Score=58.08 Aligned_cols=70 Identities=27% Similarity=0.437 Sum_probs=44.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHHHHHhhhccCCceecCCCCCCHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSQIAKQGLEE 260 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dqL~~~~~~~gv~v~~~~~~~~p~~v~~~~l~~ 260 (571)
.+|+-|++.|++|+|||+++..+|..+ |..+..|++.- + ... ........++..++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~--------l--~sk----------~~gese~~lr~lF~~ 292 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPE--------I--MSK----------LAGESESNLRKAFEE 292 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHH--------H--HSS----------CTTHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHH--------h--hcc----------cchHHHHHHHHHHHH
Confidence 457889999999999999998777543 66666665421 1 010 011233445666777
Q ss_pred HHhCCCcEEEEeC
Q 008282 261 AKKKNVDVVIVDT 273 (571)
Q Consensus 261 ~~~~~~DvIIIDT 273 (571)
+++...-+|+||-
T Consensus 293 A~~~~PsIIfIDE 305 (806)
T 3cf2_A 293 AEKNAPAIIFIDE 305 (806)
T ss_dssp HTTSCSEEEEEES
T ss_pred HHHcCCeEEEEeh
Confidence 6655566788874
No 486
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.30 E-value=0.15 Score=50.77 Aligned_cols=25 Identities=48% Similarity=0.601 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc
Q 008282 186 ILLAGLQGVGKTTVSAKLANYLKKQ 210 (571)
Q Consensus 186 I~ivG~~GvGKTTtaakLA~~La~~ 210 (571)
++|+|++|+||||++..++..+...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 8999999999999999999887643
No 487
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.29 E-value=0.031 Score=56.07 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q 008282 183 PTVILLAGLQGVGKTTVSAKLA 204 (571)
Q Consensus 183 ~~VI~ivG~~GvGKTTtaakLA 204 (571)
...|+++|.+||||||++..+.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCChHHHHHHHH
Confidence 4568999999999999997765
No 488
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.29 E-value=0.11 Score=54.42 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
.+..+++++|++|+||||+...|+..+.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4456999999999999999977775443
No 489
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.29 E-value=0.029 Score=52.59 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La 208 (571)
.++++|++|+||||++..|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988773
No 490
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.28 E-value=0.022 Score=54.07 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEec-cCCc
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAG-DVYR 223 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~-D~~R 223 (571)
.|+|+|++||||||++..|+..+ |. .++++ |..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GI--PHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SC--CEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--cEEeHHHHHH
Confidence 47889999999999998887544 43 34565 4444
No 491
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.26 E-value=0.04 Score=59.42 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKK 209 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~ 209 (571)
.-++|+|++|+|||+++..||..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999998865
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.26 E-value=0.028 Score=62.14 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhc-CCeEEEEeccCC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQ-GKSCMLVAGDVY 222 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~-G~kVlLVd~D~~ 222 (571)
++.+|+|+|++||||||++..||..+... |..+.+++.|..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 46799999999999999999999988755 457878888854
No 493
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.24 E-value=0.091 Score=55.38 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=23.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHHH
Q 008282 181 SRPTVILLAGLQGVGKTTVSAKLANYLK 208 (571)
Q Consensus 181 ~~~~VI~ivG~~GvGKTTtaakLA~~La 208 (571)
.+..+++++|++|+||||+...||-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3456999999999999999988885543
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.23 E-value=0.043 Score=52.66 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Q 008282 184 TVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVA 218 (571)
Q Consensus 184 ~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd 218 (571)
..|+|-|.-||||||.+..|+.+|. +|++|.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4788999999999999999999996 588886543
No 495
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.23 E-value=0.039 Score=53.20 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccC
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDV 221 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~ 221 (571)
..+.|+|+|++|+||||++..|+ ++|. -+|..|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV----QRGH--RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecch
Confidence 35789999999999999996665 5566 5677774
No 496
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.21 E-value=0.15 Score=53.17 Aligned_cols=63 Identities=25% Similarity=0.285 Sum_probs=40.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchhHHHH---HHHhhhccCCceecCCCCCCH
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQ---LVILGEQVGVPVYTAGTEVKP 250 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~a~dq---L~~~~~~~gv~v~~~~~~~~p 250 (571)
-+++++++|+|||.+....+..+...|.+++++. |.|.-+.++ +..++. .++.+.........
T Consensus 38 ~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~ 103 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVF--PTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKK 103 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEE--SSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEE--CCHHHHHHHHHHHHHHcc-CCceEEEEECCCCh
Confidence 4778899999999955555555556788888877 666554433 333333 56666554444443
No 497
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.19 E-value=0.038 Score=54.23 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCeEEEEeccCCchh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPA 225 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~~G~kVlLVd~D~~Rp~ 225 (571)
.++|+|++|+|||+++..++..+...+..+..++|..+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 48899999999999999998877666778888888766544
No 498
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.17 E-value=0.18 Score=50.67 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--cCCeEEEEeccCCchh
Q 008282 185 VILLAGLQGVGKTTVSAKLANYLKK--QGKSCMLVAGDVYRPA 225 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaakLA~~La~--~G~kVlLVd~D~~Rp~ 225 (571)
.+++.+++|+|||+++...+..+.. .+.+++++. +.+.-
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~--P~~~L 86 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT--PTREL 86 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC--SCHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc--CCHHH
Confidence 5788899999999988776665543 367887776 44433
No 499
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.16 E-value=0.025 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHH
Q 008282 182 RPTVILLAGLQGVGKTTVSAKLANYL 207 (571)
Q Consensus 182 ~~~VI~ivG~~GvGKTTtaakLA~~L 207 (571)
+..+++++|++|+||||++..|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35699999999999999999888665
No 500
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.16 E-value=0.31 Score=45.97 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHH-HHHHHHh--cCCeEEEEeccCCchhHH---HHHHHhhhccCCcee
Q 008282 185 VILLAGLQGVGKTTVSAK-LANYLKK--QGKSCMLVAGDVYRPAAI---DQLVILGEQVGVPVY 242 (571)
Q Consensus 185 VI~ivG~~GvGKTTtaak-LA~~La~--~G~kVlLVd~D~~Rp~a~---dqL~~~~~~~gv~v~ 242 (571)
-+++.+++|+|||.+..- +...+.. .+.+++++. +.|.-+. +.+..+....++.+.
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~ 114 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA--PTRELALQIQKVVMALAFHMDIKVH 114 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC--SSHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE--CCHHHHHHHHHHHHHHhcccCceEE
Confidence 378889999999987433 3233322 345776666 4554332 233344444455443
Done!