Query 008283
Match_columns 571
No_of_seqs 226 out of 1131
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 3.6E-49 1.2E-53 408.4 21.9 238 302-554 19-318 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 3.1E-41 1.1E-45 334.8 22.8 217 285-547 2-221 (226)
3 2xph_A Sentrin-specific protea 100.0 5.3E-41 1.8E-45 335.7 23.3 219 283-548 12-234 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 1E-39 3.5E-44 323.0 21.8 205 285-548 4-217 (221)
5 2bkr_A Sentrin-specific protea 100.0 7.2E-39 2.5E-43 314.6 16.0 193 314-551 9-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 6.8E-34 2.3E-38 274.4 11.3 180 328-549 1-181 (186)
7 4ekf_A Adenain; alpha and beta 94.1 0.84 2.9E-05 43.3 13.4 84 409-512 52-136 (204)
8 3v1a_A Computational design, M 27.8 60 0.0021 24.0 3.6 43 64-106 2-45 (48)
9 3j21_W 50S ribosomal protein L 21.4 36 0.0012 27.1 1.6 51 60-110 6-64 (72)
10 3iv1_A Tumor susceptibility ge 21.1 47 0.0016 27.0 2.2 41 66-106 14-57 (78)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-49 Score=408.36 Aligned_cols=238 Identities=26% Similarity=0.538 Sum_probs=195.4
Q ss_pred cCeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEchhhHHHHHHhhhcC--CCC
Q 008283 302 DAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHK--GGD 379 (571)
Q Consensus 302 ~~~i~yp~~~~~~~v~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~v~~fnTfFy~kL~~~~~~k--g~d 379 (571)
...|+||+++++++++|+.+||.||.+++||||+|||||++||..+... .....++|+||||||++|....... +..
T Consensus 19 ~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~ 97 (323)
T 3eay_A 19 QKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTEDNP 97 (323)
T ss_dssp CEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC--------C
T ss_pred ceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhcccccccccc
Confidence 3679999999999999999999999999999999999999999755432 1234689999999999998632100 000
Q ss_pred ----chhHHHHHHhhhccccCCCCCEEEEEeecCCceEEEEEEcCCCCC-------------------------------
Q 008283 380 ----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED------------------------------- 424 (571)
Q Consensus 380 ----~~~~~~~vkrW~k~vnif~kd~IfIPIn~~~HWsLlVI~~p~k~~------------------------------- 424 (571)
....|.+|+||+++++||++++||||||.+.||+|+|||+|.++.
T Consensus 98 ~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 177 (323)
T 3eay_A 98 NLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLR 177 (323)
T ss_dssp CSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------------
T ss_pred cchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence 124689999999999999999999999999999999999997420
Q ss_pred -------------------------CCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCC
Q 008283 425 -------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLP 479 (571)
Q Consensus 425 -------------------------~~~~~I~~yDSLg~~~~k~i~~~L~~yL~~e~~~~~~~~~~~D~~~~~~~W~~lp 479 (571)
.+.|+|+|||||++++...++..|+.||..||+.+.+.. ..++...|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~~-- 251 (323)
T 3eay_A 178 TTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMVD-- 251 (323)
T ss_dssp ----------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSCE--
T ss_pred cccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHcee--
Confidence 135799999999998777899999999999999865431 2233334432
Q ss_pred ccccccCCCcCCCCCCCChhHHHHHHHHHHHhhCCcccchhhhhcccccCcCHHHHHHHHHHHHHHHHHHhhhhc
Q 008283 480 RRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISS 554 (571)
Q Consensus 480 ~~i~~~~~~vPqQ~Ng~DCGVFVL~y~e~~~~~~p~~ftq~dm~~frr~~f~pe~i~~~R~~I~~lIl~L~~~~~ 554 (571)
..+.+|||.|++|||||||+||++|+.+.+.+|++ +++...||+|++|..+|..|++||++|..++.
T Consensus 252 -----~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~ 318 (323)
T 3eay_A 252 -----LCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEKWFPRHVIKTKREDIRELILKLHLQQQ 318 (323)
T ss_dssp -----ECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred -----ccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34579999999999999999999999998888874 55678999999999999999999999987764
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3.1e-41 Score=334.78 Aligned_cols=217 Identities=28% Similarity=0.483 Sum_probs=175.7
Q ss_pred CCccchHhHHHHHHhhcc---CeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 008283 285 LHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 361 (571)
Q Consensus 285 ~~~~~~e~~~e~~~~~~~---~~i~yp~~~~~~~v~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~v~~f 361 (571)
++|.+.|+..++...|.. ..+.. ..+++.|+.+|+.+|.+++||||+|||||++||.++.... ..+++|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f 75 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVF 75 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEEC
T ss_pred CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEE
Confidence 567888888888888742 12221 2468999999999999999999999999999998765321 24689999
Q ss_pred chhhHHHHHHhhhcCCCCchhHHHHHHhhhccccCCCCCEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCc
Q 008283 362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441 (571)
Q Consensus 362 nTfFy~kL~~~~~~kg~d~~~~~~~vkrW~k~vnif~kd~IfIPIn~~~HWsLlVI~~p~k~~~~~~~I~~yDSLg~~~~ 441 (571)
|||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+.+.+ +|+|||||++.+
T Consensus 76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~------~i~~~DSl~~~~- 138 (226)
T 1th0_A 76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLKYLDSMGQKG- 138 (226)
T ss_dssp CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCCCC-
T ss_pred eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCC------ceEEEcCCCCCc-
Confidence 99999999863 3678999999999999999999999999999999999987 999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhhCCcccchhh
Q 008283 442 LSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 521 (571)
Q Consensus 442 k~i~~~L~~yL~~e~~~~~~~~~~~D~~~~~~~W~~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~y~e~~~~~~p~~ftq~d 521 (571)
..++..|..||..++..+.+ .+ +....|+.. .+...++|||.||+|||||||+||++++.+.|..|++++
T Consensus 139 ~~~~~~l~~~l~~e~~~k~~----~~--~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~d 208 (226)
T 1th0_A 139 HRICEILLQYLQDESKTKRN----SD--LNLLEWTHH----SMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQ 208 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CC--CCGGGCEEE----ECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhcC----CC--CCcccceec----cccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhh
Confidence 46889999999998865432 22 334567642 123568999999999999999999999999888888766
Q ss_pred hhcccccCcCHHHHHHHHHHHHHHHH
Q 008283 522 LAMFGKRWFRPEEASGLRIKIRNLLK 547 (571)
Q Consensus 522 m~~frr~~f~pe~i~~~R~~I~~lIl 547 (571)
|+ .+|.+|...|+
T Consensus 209 m~-------------~~R~~~~~ei~ 221 (226)
T 1th0_A 209 MP-------------LFRKKMVWEIL 221 (226)
T ss_dssp HH-------------HHHHHHHHHHH
T ss_pred HH-------------HHHHHHHHHHH
Confidence 65 45666665554
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=5.3e-41 Score=335.70 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=178.5
Q ss_pred CCCCccchHhHHHHHHhhccC----eeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCce
Q 008283 283 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 358 (571)
Q Consensus 283 ~~~~~~~~e~~~e~~~~~~~~----~i~yp~~~~~~~v~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~v 358 (571)
..+++.+.|...++...+... .+++ .+++.|+.+|+.+|.+++||||+|||||++||.++.... ..+++
T Consensus 12 ~~~~~lt~e~~~~v~~~l~~~~~~~vl~~-----~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~ 84 (238)
T 2xph_A 12 DEFPEITEEMEKEIKNVFRNGNQDEVLSE-----AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSV 84 (238)
T ss_dssp CCCCCCCHHHHHHHHHHSSSSCTTCCCEE-----ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCE
T ss_pred cCCCCCCHHHHHHHHHHHcCCChhheeec-----CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCce
Confidence 347788888888888887531 2322 468999999999999999999999999999999876432 35689
Q ss_pred EEEchhhHHHHHHhhhcCCCCchhHHHHHHhhhccccCCCCCEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 008283 359 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL 438 (571)
Q Consensus 359 ~~fnTfFy~kL~~~~~~kg~d~~~~~~~vkrW~k~vnif~kd~IfIPIn~~~HWsLlVI~~p~k~~~~~~~I~~yDSLg~ 438 (571)
|+||||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+.+.+ +|+|||||++
T Consensus 85 ~~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~------~i~~~DSl~~ 148 (238)
T 2xph_A 85 HAFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK------NITYYDSMGG 148 (238)
T ss_dssp EECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCC
T ss_pred eeeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccc------eEEEeecccC
Confidence 99999999999752 3788999999999999999999999999999999999987 9999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhhCCcccc
Q 008283 439 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK 518 (571)
Q Consensus 439 ~~~k~i~~~L~~yL~~e~~~~~~~~~~~D~~~~~~~W~~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~y~e~~~~~~p~~ft 518 (571)
.+ ...+..|..||..++..+.+. .+....|+.. .....++|||.||+|||||||+||++|+.+.|..|+
T Consensus 149 ~~-~~~~~~l~~~L~~e~~~k~~~------~~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~ 217 (238)
T 2xph_A 149 IN-NEACRILLQYLKQESIDKKRK------EFDTNGWQLF----SKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFT 217 (238)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHCS------CCCCTTCEEE----ECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhcCC------CcCcccceec----ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcC
Confidence 76 457788999999988765322 1233567642 123578999999999999999999999999888877
Q ss_pred hhhhhcccccCcCHHHHHHHHHHHHHHHHH
Q 008283 519 KKDLAMFGKRWFRPEEASGLRIKIRNLLKK 548 (571)
Q Consensus 519 q~dm~~frr~~f~pe~i~~~R~~I~~lIl~ 548 (571)
+++|+ .+|.+|...|+.
T Consensus 218 q~dm~-------------~~R~~m~~eil~ 234 (238)
T 2xph_A 218 QQHMP-------------YFRKRMVWEILH 234 (238)
T ss_dssp GGGHH-------------HHHHHHHHHHHH
T ss_pred hhhHH-------------HHHHHHHHHHHh
Confidence 76664 566666666553
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1e-39 Score=322.98 Aligned_cols=205 Identities=25% Similarity=0.448 Sum_probs=168.3
Q ss_pred CCccchHhHHHHHHhhccC---eeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 008283 285 LHIETTEQADEFAECMIDA---KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 361 (571)
Q Consensus 285 ~~~~~~e~~~e~~~~~~~~---~i~yp~~~~~~~v~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~v~~f 361 (571)
+|+++.++..+|.+.|... .++ ..+++.|+.+|+.+|.+++||||+|||||++||.... +++|+|
T Consensus 4 ~~~l~~~~~~~v~~~l~~~~~~~l~-----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f 71 (221)
T 1euv_A 4 VPELNEKDDDQVQKALASRENTQLM-----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAF 71 (221)
T ss_dssp SCCCCHHHHHHHHHHHTCSSCCEEE-----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEEC
T ss_pred CCCCCHHHHHHHHHHhcCCCCeeee-----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEE
Confidence 5678888888888887642 222 2578999999999999999999999999999998763 479999
Q ss_pred chhhHHHHHHhhhcCCCCchhHHHHHHhhhc--cccCCCCCEEEEEeec-CCceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 008283 362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKL 438 (571)
Q Consensus 362 nTfFy~kL~~~~~~kg~d~~~~~~~vkrW~k--~vnif~kd~IfIPIn~-~~HWsLlVI~~p~k~~~~~~~I~~yDSLg~ 438 (571)
+||||++|... .|..|++|++ ++++|++++||||||. +.||+|+||+++.+ +|+|||||++
T Consensus 72 ~s~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~ 135 (221)
T 1euv_A 72 NSFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSN 135 (221)
T ss_dssp CTHHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCC
T ss_pred EcHHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCC------EEEEEecCCC
Confidence 99999999863 3678999997 6799999999999998 59999999999988 9999999986
Q ss_pred CCcH---HHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhhCCc
Q 008283 439 HCSL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPE 515 (571)
Q Consensus 439 ~~~k---~i~~~L~~yL~~e~~~~~~~~~~~D~~~~~~~W~~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~y~e~~~~~~p~ 515 (571)
.... .+++.|+.||..+++.+. + ..|. +...++|||.||+|||||||+||++++.+.|.
T Consensus 136 ~~~~~~~~i~~~l~~~l~~e~~~~~----~-------~~~~-------~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l 197 (221)
T 1euv_A 136 GPNAMSFAILTDLQKYVMEESKHTI----G-------EDFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL 197 (221)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTSSS----C-------TTCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhc----C-------CCce-------EeecCCCCCCCCcCHHHHHHHHHHHHhCCCCC
Confidence 5432 577888899987754321 1 1232 23568999999999999999999999999775
Q ss_pred ccchhhhhcccccCcCHHHHHHHHHHHHHHHHH
Q 008283 516 RLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKK 548 (571)
Q Consensus 516 ~ftq~dm~~frr~~f~pe~i~~~R~~I~~lIl~ 548 (571)
.| +++++..+|.+|+++|+.
T Consensus 198 ~f-------------~~~d~~~~R~~i~~~Il~ 217 (221)
T 1euv_A 198 DF-------------DYKDAIRMRRFIAHLILT 217 (221)
T ss_dssp CC-------------CHHHHHHHHHHHHHHHHT
T ss_pred Cc-------------CHHHHHHHHHHHHHHHHh
Confidence 54 456677899999999875
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=7.2e-39 Score=314.61 Aligned_cols=193 Identities=18% Similarity=0.266 Sum_probs=152.2
Q ss_pred CceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEc---hhhHHHHHHhhhcCCCCchhHHHHHHhh
Q 008283 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW 390 (571)
Q Consensus 314 ~~v~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~v~~fn---TfFy~kL~~~~~~kg~d~~~~~~~vkrW 390 (571)
+++.|+.+|+.+|.+++||||+|||||++||.++...+. ..++|||| ||||..+. .+..|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~--~~~~~~~~p~~s~f~~~~~------------~~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDS--SDHVSFISPEVTQFIKCTS------------NPAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGG--TTTEEEECHHHHHHHHHCC------------CHHHHHHH
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCC--CCcEEEEChHHHHHHHhCC------------CHHHHHHH
Confidence 689999999999999999999999999999999875432 47899999 89984332 15689999
Q ss_pred hccccCCCCCEEEEEeec-------CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccC
Q 008283 391 WKGVNIFQKSYVLIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEV 463 (571)
Q Consensus 391 ~k~vnif~kd~IfIPIn~-------~~HWsLlVI~~p~k~~~~~~~I~~yDSLg~~~~k~i~~~L~~yL~~e~~~~~~~~ 463 (571)
++++++|++++||||||. +.||+|+||+++.+ +|+|||||++.+.. ....+..+|...+. ..
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~------~i~~~DSl~~~n~~-~~~~l~~~l~~~l~---~~- 143 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN------SFFHYDSHSRSNSV-HAKQVAEKLEAFLG---RK- 143 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGT------EEEEECSSTTTTHH-HHHHHHHHHHHHHS---CT-
T ss_pred hcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCC------eEEEEeCCCCCCHH-HHHHHHHHHHHHhC---Cc-
Confidence 999999999999999995 79999999999988 99999999987643 33334444443221 11
Q ss_pred CCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhhCCcccchhhhhcccccCcCHHHHHHHHHHHH
Q 008283 464 SPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIR 543 (571)
Q Consensus 464 ~~~D~~~~~~~W~~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~y~e~~~~~~p~~ftq~dm~~frr~~f~pe~i~~~R~~I~ 543 (571)
. ..|. +...++|||.||+|||||||+||++++.+.... ..+. ...||++++|..+|++|+
T Consensus 144 -~-------~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~---~~~~--~~~~~~~~~i~~~R~~i~ 203 (212)
T 2bkr_A 144 -G-------DKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ---QTES--LLQLLTPAYITKKRGEWK 203 (212)
T ss_dssp -T-------CCCC-------EEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC---CCCC--HHHHCCHHHHHHHHHHHH
T ss_pred -c-------ccce-------EeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc---Cccc--ccccCCHHHHHHHHHHHH
Confidence 0 0121 235689999999999999999999999984211 0011 246799999999999999
Q ss_pred HHHHHHhh
Q 008283 544 NLLKKQFQ 551 (571)
Q Consensus 544 ~lIl~L~~ 551 (571)
++|++|.+
T Consensus 204 ~lI~~L~~ 211 (212)
T 2bkr_A 204 DLIATLAK 211 (212)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999964
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=6.8e-34 Score=274.43 Aligned_cols=180 Identities=19% Similarity=0.235 Sum_probs=126.5
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEchhhHHHHHHhhhcCCCCchhHHHHHHhhhccccCCCCCEEEEEee
Q 008283 328 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407 (571)
Q Consensus 328 ~~~WLND~IInfYl~~L~~~~~~~~~~~~~v~~fnTfFy~kL~~~~~~kg~d~~~~~~~vkrW~k~vnif~kd~IfIPIn 407 (571)
+++||||+|||||++||.++...... ..++|||+++++..+.. + + ...+.++.+|++..++ +++||||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~-~~~v~f~~p~~~~~l~~-----~-~-~~~~~~~~~~~~~~~~--~~~i~iPin 70 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN-AHLLHFADSQVVTMLSS-----A-D-PDQQARAQRLLAGDDI--PPIVFLPIN 70 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT-GGGEEECCHHHHHHTTC-----S-S-HHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC-cceEEEECHHHHHHHHh-----C-C-HHHHHHHHHHcccccc--cCEEEEEEe
Confidence 47899999999999999998754321 24599999876554432 1 1 1346788888877665 999999999
Q ss_pred c-CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccC
Q 008283 408 E-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI 486 (571)
Q Consensus 408 ~-~~HWsLlVI~~p~k~~~~~~~I~~yDSLg~~~~k~i~~~L~~yL~~e~~~~~~~~~~~D~~~~~~~W~~lp~~i~~~~ 486 (571)
. ++||+|+||+.+.+ .-|+|+|||||++.+.. ...+...|.. ++... +. .+..
T Consensus 71 ~~~~HWsLlvi~~~~~---~~~~~~~~DSl~~~~~~--~~~l~~~l~~---~l~~~------------~~------~~~~ 124 (186)
T 2oix_A 71 QPNAHWSLLVVDRRNK---DAVAAYHYDSMAQKDPQ--QRYLADMAAY---HLGLD------------YQ------QTHE 124 (186)
T ss_dssp ETTTEEEEEEEECSST---TSCEEEEECCCSSCCHH--HHHHHHHHHH---HTTCC------------GG------GCEE
T ss_pred CCCCccEEEEEECCCC---eeeeeEEEcCCCCCCHH--HHHHHHHHHH---HhCCC------------cc------cccc
Confidence 8 89999999999987 12345999999985432 2222233322 11110 00 1235
Q ss_pred CCcCCCCCCCChhHHHHHHHHHHHhhCCcccchhhhhcccccCcCHHHHHHHHHHHHHHHHHH
Q 008283 487 IPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 549 (571)
Q Consensus 487 ~~vPqQ~Ng~DCGVFVL~y~e~~~~~~p~~ftq~dm~~frr~~f~pe~i~~~R~~I~~lIl~L 549 (571)
.++|||.||||||||||+||++++..... ... ....|+++++|..+|++|+++|.++
T Consensus 125 ~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~----~~~--~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 125 MPIAIQSDGYSAGDHVLTGIEVLAHRVLD----GTF--DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp ECBCCCC--CCHHHHHHHHHHHHHHHHHH----TCT--TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhh----cCc--cCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999876211 001 2335789999999999999999976
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=94.14 E-value=0.84 Score=43.30 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCcccccc-CC
Q 008283 409 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDR-II 487 (571)
Q Consensus 409 ~~HWsLlVI~~p~k~~~~~~~I~~yDSLg~~~~k~i~~~L~~yL~~e~~~~~~~~~~~D~~~~~~~W~~lp~~i~~~-~~ 487 (571)
+.||..+..+.+.. ++|.||.+|-.+.+ + .++..-++..+-+.. . +.-++ .+.|..+ ..
T Consensus 52 GvHWiA~Aw~P~s~------~~YmFDPfG~sd~~-L----~qiY~F~Y~~llkRS-A--L~ssp------dRCv~Lvkst 111 (204)
T 4ekf_A 52 GVHWMAFAWNPRSK------TCYLFEPFGFSDQR-L----KQVYQFEYESLLRRS-A--IASSP------DRCITLEKST 111 (204)
T ss_dssp CCCEEEEEEETTTT------EEEEECTBTTCSHH-H----HHHHHHHHHHHHHHH-C--C--------------EEEECC
T ss_pred ceeEEEeEecCCcc------eEEEeCCCCCCHHH-H----HHHhhhhHHHHHHHH-h--hcCCC------CceeEEEecc
Confidence 69999999999887 99999999988632 2 222222222221110 0 00000 0223222 22
Q ss_pred CcCCCCCCCChhHHHHHHHHHHHhh
Q 008283 488 PVPQQKNDYDCGLFVLFFMERFMEE 512 (571)
Q Consensus 488 ~vPqQ~Ng~DCGVFVL~y~e~~~~~ 512 (571)
+.-|=.++--||+|.|.|+.+|...
T Consensus 112 qsVQcp~SaACGLFC~lFL~aF~~~ 136 (204)
T 4ekf_A 112 QSVQGPNSAAAGLFCCMFLHAFANW 136 (204)
T ss_dssp SBCSCTTCCCHHHHHHHHHHHHHHC
T ss_pred ccccCcCchhHHHHHHHHHHHHHhC
Confidence 3334467789999999999999876
No 8
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.78 E-value=60 Score=23.98 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.1
Q ss_pred CchHHHHHHHHhhhhhc-ccccCCCcchHhHHHHHHHHHHHHHH
Q 008283 64 PDQELGVRIARMKDTYS-KVRHCLPDKGKKILATVTRLEKECER 106 (571)
Q Consensus 64 ~D~~L~e~i~r~~~~~~-~~~~~lpD~G~K~~~~i~~~~~E~~r 106 (571)
||..|.|+|-=+++++. .-..|==|-=+-|.+.|..|++|++|
T Consensus 2 ~~dPL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 2 SGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 57799999999999985 33344446677789999999999986
No 9
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.44 E-value=36 Score=27.14 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred cCCCCchHHHHHHHHhhhhhc------cccc--CCCcchHhHHHHHHHHHHHHHHHhhh
Q 008283 60 DRQIPDQELGVRIARMKDTYS------KVRH--CLPDKGKKILATVTRLEKECERRRLA 110 (571)
Q Consensus 60 ~~~~~D~~L~e~i~r~~~~~~------~~~~--~lpD~G~K~~~~i~~~~~E~~rR~~~ 110 (571)
++.+|+.||.+++...+..|- .++. -=|-+=..+|+.|.|+.=.+..|.+.
T Consensus 6 lr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~ 64 (72)
T 3j21_W 6 IREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRE 64 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999888873 2322 22555567888999988777766553
No 10
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.12 E-value=47 Score=27.04 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhhhhc---ccccCCCcchHhHHHHHHHHHHHHHH
Q 008283 66 QELGVRIARMKDTYS---KVRHCLPDKGKKILATVTRLEKECER 106 (571)
Q Consensus 66 ~~L~e~i~r~~~~~~---~~~~~lpD~G~K~~~~i~~~~~E~~r 106 (571)
+.|+|.+.+.+..|. .+..-|-.|+.||..-|.+|++|...
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 457777777777764 45566889999999999999999876
Done!