Query 008284
Match_columns 571
No_of_seqs 202 out of 488
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 1.6E-30 5.4E-35 232.1 9.6 102 203-304 6-108 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 4.8E-27 1.6E-31 215.1 0.4 96 209-304 2-110 (140)
3 1k1g_A SF1-BO isoform; splicin 99.9 1.1E-24 3.6E-29 196.8 6.4 89 207-295 5-99 (131)
4 3krm_A Insulin-like growth fac 99.3 6E-12 2E-16 113.5 12.4 156 107-301 6-162 (163)
5 2jvz_A KH type-splicing, FAR u 99.3 3.8E-11 1.3E-15 107.6 14.2 155 105-297 3-162 (164)
6 1j4w_A FUSE binding protein; s 99.1 5.8E-10 2E-14 101.8 12.0 155 107-293 6-174 (174)
7 2jzx_A Poly(RC)-binding protei 99.1 6.5E-10 2.2E-14 99.9 10.2 153 104-294 5-158 (160)
8 2anr_A Neuro-oncological ventr 99.0 7.5E-10 2.6E-14 101.3 10.5 159 104-294 6-174 (178)
9 2opv_A KHSRP protein; KH domai 98.9 5.6E-09 1.9E-13 86.6 8.1 71 209-294 14-84 (85)
10 1x4m_A FAR upstream element bi 98.7 1.9E-08 6.5E-13 85.1 5.9 73 207-294 13-85 (94)
11 1zzk_A Heterogeneous nuclear r 98.7 3E-08 1E-12 81.6 6.6 74 208-298 6-79 (82)
12 1x4n_A FAR upstream element bi 98.6 2.8E-08 9.6E-13 83.7 5.3 72 208-296 14-85 (92)
13 1dtj_A RNA-binding neurooncolo 98.6 4.4E-08 1.5E-12 78.9 6.2 71 210-294 4-74 (76)
14 2e3u_A PH-DIM2P, hypothetical 98.6 3.2E-08 1.1E-12 96.1 5.5 147 106-295 36-191 (219)
15 2hh3_A KH-type splicing regula 98.6 7E-08 2.4E-12 84.0 6.5 70 210-296 12-81 (106)
16 1j5k_A Heterogeneous nuclear r 98.6 3.8E-08 1.3E-12 82.4 4.3 75 208-299 13-87 (89)
17 2hh2_A KH-type splicing regula 98.6 7.2E-08 2.5E-12 83.5 6.0 72 210-295 8-79 (107)
18 2cte_A Vigilin; K homology typ 98.5 6.4E-08 2.2E-12 81.9 5.1 71 209-298 17-87 (94)
19 2ctm_A Vigilin; K homology typ 98.5 1E-07 3.6E-12 81.3 6.2 76 209-302 17-92 (95)
20 2ctl_A Vigilin; K homology typ 98.5 1.6E-07 5.5E-12 80.3 7.1 76 209-300 17-92 (97)
21 1we8_A Tudor and KH domain con 98.5 1.5E-07 5.1E-12 80.9 6.3 73 209-296 15-87 (104)
22 1ec6_A RNA-binding protein NOV 98.5 1.3E-07 4.6E-12 78.4 5.2 76 210-299 4-79 (87)
23 1wvn_A Poly(RC)-binding protei 98.5 1E-07 3.5E-12 78.3 4.3 70 209-295 6-75 (82)
24 2p2r_A Poly(RC)-binding protei 98.5 9.7E-08 3.3E-12 77.3 4.1 69 209-294 5-73 (76)
25 2ctk_A Vigilin; K homology typ 98.4 1.4E-07 4.8E-12 81.6 4.9 74 210-302 18-91 (104)
26 2dgr_A Ring finger and KH doma 98.4 1.3E-07 4.6E-12 79.1 4.4 65 209-293 10-74 (83)
27 1vig_A Vigilin; RNA-binding pr 98.4 2.7E-07 9.1E-12 74.5 4.9 65 210-293 6-70 (71)
28 2axy_A Poly(RC)-binding protei 98.3 3E-07 1E-11 74.5 4.1 67 209-294 5-71 (73)
29 1tua_A Hypothetical protein AP 98.2 1E-06 3.4E-11 84.3 5.8 146 107-295 7-160 (191)
30 2qnd_A FMR1 protein; KH domain 98.2 4.1E-06 1.4E-10 75.9 8.5 137 104-296 4-143 (144)
31 2jvz_A KH type-splicing, FAR u 98.0 8.4E-06 2.9E-10 72.9 7.1 70 211-295 4-73 (164)
32 1j4w_A FUSE binding protein; s 98.0 5.9E-06 2E-10 75.4 4.9 69 211-296 5-73 (174)
33 2ctj_A Vigilin; K homology typ 98.0 5.5E-06 1.9E-10 70.9 4.3 69 209-296 17-86 (95)
34 2cpq_A FragIle X mental retard 97.8 4.9E-06 1.7E-10 71.6 2.1 63 210-293 16-79 (91)
35 2jzx_A Poly(RC)-binding protei 97.7 2.4E-05 8.1E-10 70.2 4.1 67 210-295 6-72 (160)
36 3krm_A Insulin-like growth fac 97.7 3.7E-05 1.3E-09 69.1 5.0 69 211-295 5-73 (163)
37 2yqr_A KIAA0907 protein; struc 97.6 0.00012 4.2E-09 65.4 7.8 80 103-190 11-99 (119)
38 2anr_A Neuro-oncological ventr 97.6 4E-05 1.4E-09 70.0 4.4 72 209-294 6-77 (178)
39 1k1g_A SF1-BO isoform; splicin 97.5 0.00014 4.6E-09 65.8 6.7 79 105-191 8-100 (131)
40 3u1k_A Polyribonucleotide nucl 97.3 0.00011 3.9E-09 80.9 4.5 62 211-294 569-630 (630)
41 2ctf_A Vigilin; K homology typ 97.0 0.0014 4.6E-08 56.7 7.2 71 209-301 27-98 (102)
42 4aid_A Polyribonucleotide nucl 96.7 0.0011 3.7E-08 74.3 4.8 56 225-296 580-635 (726)
43 3n89_A Defective in GERM LINE 96.6 0.0039 1.3E-07 65.2 7.9 61 226-293 197-259 (376)
44 2bl5_A MGC83862 protein, quaki 96.5 0.0029 1E-07 58.1 5.7 66 122-190 25-101 (140)
45 2e3u_A PH-DIM2P, hypothetical 96.4 0.0027 9.2E-08 61.7 4.8 62 211-293 36-101 (219)
46 3n89_A Defective in GERM LINE 96.2 0.0029 9.8E-08 66.2 4.2 75 207-293 28-104 (376)
47 2qnd_A FMR1 protein; KH domain 96.1 0.0034 1.2E-07 56.7 3.6 61 209-289 4-64 (144)
48 1zzk_A Heterogeneous nuclear r 95.2 0.067 2.3E-06 43.7 7.7 70 104-191 7-77 (82)
49 2opv_A KHSRP protein; KH domai 95.1 0.062 2.1E-06 44.2 7.5 70 105-190 15-85 (85)
50 2hh2_A KH-type splicing regula 94.7 0.039 1.3E-06 47.6 5.4 73 106-193 9-82 (107)
51 1dtj_A RNA-binding neurooncolo 94.5 0.053 1.8E-06 43.2 5.3 71 105-190 4-75 (76)
52 2p2r_A Poly(RC)-binding protei 94.4 0.051 1.7E-06 43.6 5.0 70 104-191 5-75 (76)
53 1wvn_A Poly(RC)-binding protei 94.3 0.052 1.8E-06 44.3 4.9 70 104-191 6-76 (82)
54 1we8_A Tudor and KH domain con 94.1 0.14 4.8E-06 43.7 7.4 79 98-192 9-88 (104)
55 1x4n_A FAR upstream element bi 94.1 0.061 2.1E-06 45.0 5.0 71 104-192 15-86 (92)
56 1x4m_A FAR upstream element bi 93.9 0.064 2.2E-06 45.0 4.9 72 104-191 15-87 (94)
57 2hh3_A KH-type splicing regula 93.7 0.093 3.2E-06 45.5 5.6 69 106-192 13-82 (106)
58 1j5k_A Heterogeneous nuclear r 93.6 0.081 2.8E-06 43.9 4.9 70 104-191 14-84 (89)
59 2dgr_A Ring finger and KH doma 93.2 0.13 4.6E-06 42.8 5.7 67 104-191 10-77 (83)
60 2cte_A Vigilin; K homology typ 93.2 0.19 6.3E-06 42.3 6.5 68 104-191 17-85 (94)
61 3v69_A Protein filia; RNA-bind 93.0 0.16 5.4E-06 47.1 6.3 68 222-301 63-130 (140)
62 3cdi_A Polynucleotide phosphor 93.0 0.028 9.7E-07 63.0 1.5 54 225-294 570-623 (723)
63 1ec6_A RNA-binding protein NOV 91.8 0.34 1.2E-05 39.8 6.3 68 107-191 6-76 (87)
64 1vig_A Vigilin; RNA-binding pr 91.5 0.23 7.8E-06 39.7 4.8 64 105-188 6-70 (71)
65 1e3p_A Guanosine pentaphosphat 91.5 0.078 2.7E-06 59.8 2.8 53 225-293 608-660 (757)
66 2ctl_A Vigilin; K homology typ 91.1 0.57 2E-05 39.7 7.1 70 104-190 17-87 (97)
67 2axy_A Poly(RC)-binding protei 91.0 0.49 1.7E-05 37.9 6.3 67 105-191 6-73 (73)
68 2ctm_A Vigilin; K homology typ 90.4 0.4 1.4E-05 40.6 5.5 69 104-191 17-86 (95)
69 2ctk_A Vigilin; K homology typ 90.1 0.33 1.1E-05 41.8 4.8 67 104-190 17-84 (104)
70 1tua_A Hypothetical protein AP 89.8 0.39 1.3E-05 45.9 5.5 67 210-297 5-75 (191)
71 2ctj_A Vigilin; K homology typ 83.3 1.6 5.4E-05 37.1 5.2 67 105-191 18-86 (95)
72 4fxw_B Splicing factor 1; UHM, 82.6 0.79 2.7E-05 41.6 3.2 52 149-200 70-121 (124)
73 2ctf_A Vigilin; K homology typ 75.3 4.9 0.00017 34.4 5.8 64 104-190 27-92 (102)
74 2cpq_A FragIle X mental retard 58.2 3.6 0.00012 35.2 1.5 62 104-187 15-78 (91)
75 2z0s_A Probable exosome comple 44.4 29 0.00098 33.5 5.5 49 225-289 158-206 (235)
76 1wjw_A Phosphoacetylglucosamin 37.0 1.2E+02 0.004 26.1 7.7 50 235-299 45-96 (112)
77 2cxc_A NUSA; transcription ter 33.8 10 0.00035 34.8 0.4 27 226-252 47-73 (144)
78 4hhu_A OR280; engineered prote 31.7 84 0.0029 28.9 6.1 36 238-285 63-100 (170)
79 3u1k_A Polyribonucleotide nucl 30.5 36 0.0012 37.8 4.2 60 107-189 570-630 (630)
80 2ba0_A Archeal exosome RNA bin 27.1 44 0.0015 32.3 3.6 40 224-279 145-184 (229)
81 3iev_A GTP-binding protein ERA 25.6 17 0.00059 35.5 0.5 39 208-251 239-285 (308)
82 3iot_A Maltose-binding protein 20.2 22 0.00075 35.8 0.0 15 177-191 188-202 (449)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.6e-30 Score=232.07 Aligned_cols=102 Identities=37% Similarity=0.685 Sum_probs=98.7
Q ss_pred CCCcccceeEEEecCC-CCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 008284 203 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 281 (571)
Q Consensus 203 ~~G~k~~qeKIyIpld-~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~ 281 (571)
..|++|+++|||||++ .+|+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|++.+.++
T Consensus 6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~ 85 (119)
T 2yqr_A 6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 85 (119)
T ss_dssp CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence 4577999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 008284 282 LEEAKRLAENLLDTISAECGASR 304 (571)
Q Consensus 282 v~kAk~LiEnLL~tV~eEy~a~r 304 (571)
+++|++||++||.+++++|+.|+
T Consensus 86 i~~A~~~Ie~Ll~~v~~~~~~~~ 108 (119)
T 2yqr_A 86 LAAAKKLCENLLQTVHAEYSRFV 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHH
Confidence 99999999999999999999986
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.92 E-value=4.8e-27 Score=215.08 Aligned_cols=96 Identities=21% Similarity=0.423 Sum_probs=85.0
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCC----CCCC----CCCCCCcEEEEEeCCHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSE----GLQG----EEVHQPLHLFLSSNNPK 280 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E----~~~g----~EsdEPLHV~Isa~~~e 280 (571)
+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.. ...| ++.+|||||+|++.+++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 579999999999999999999999999999999999999999999999742 1122 36899999999999886
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcccc
Q 008284 281 -----SLEEAKRLAENLLDTISAECGASR 304 (571)
Q Consensus 281 -----~v~kAk~LiEnLL~tV~eEy~a~r 304 (571)
.|++|+++|++||.++.+.++.++
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K 110 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLK 110 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHH
Confidence 899999999999999887666665
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.90 E-value=1.1e-24 Score=196.80 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=81.4
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCC------CCCCCCCCCcEEEEEeCCHH
Q 008284 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG------LQGEEVHQPLHLFLSSNNPK 280 (571)
Q Consensus 207 k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~------~~g~EsdEPLHV~Isa~~~e 280 (571)
..+++|||||++.||+|||+|+||||+|+|+|+||+||||||.||||||++.+. ....+++|||||+|++.+.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467899999999999999999999999999999999999999999999998532 22346789999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008284 281 SLEEAKRLAENLLDT 295 (571)
Q Consensus 281 ~v~kAk~LiEnLL~t 295 (571)
.+++|+++|++||..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.35 E-value=6e-12 Score=113.45 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=112.1
Q ss_pred EEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008284 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (571)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeIe 185 (571)
+|.|..- .++..+.+ |+++++|++.|||.|..--.-+| +..--.+.|.|.. ..+.+|..+|.
T Consensus 6 ~~~ip~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~------~~~~r~v~I~G~~---------e~v~~A~~~I~ 68 (163)
T 3krm_A 6 QVFIPAQ--AVGAIIGKKGQHIKQLSRFASASIKIAPPETP------DSKVRMVIITGPP---------EAQFKAQGRIY 68 (163)
T ss_dssp EEEEEGG--GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST------TCSEEEEEEEECH---------HHHHHHHHHHH
T ss_pred EEEechh--hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC------CCCceEEEEEcCH---------HHHHHHHHHHH
Confidence 4555433 47888877 99999999999999876332121 2333456888953 47888999999
Q ss_pred HHHHccCCCCCccccccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCC
Q 008284 186 EMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEE 265 (571)
Q Consensus 186 EILKE~P~~~pp~~~p~~~G~k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~E 265 (571)
+++.+...+.+.. ......++.||- +++|+|||++|.++|+|+++|||+|.|-..|.. .
T Consensus 69 ~~~~e~~~~~~~~-------~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--------~ 127 (163)
T 3krm_A 69 GKLKEENFFGPKE-------EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--------D 127 (163)
T ss_dssp HHHHHTTSSCSSC-------CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--------C
T ss_pred HHHhccccccccc-------CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--------C
Confidence 9998764332211 112345677773 479999999999999999999999999764321 1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Q 008284 266 VHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 301 (571)
Q Consensus 266 sdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~eEy~ 301 (571)
..+.-.|.|+| +++++++|+++|++||+.+++..+
T Consensus 128 ~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~ 162 (163)
T 3krm_A 128 ENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQQHQ 162 (163)
T ss_dssp TTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23334789999 899999999999999998877653
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.29 E-value=3.8e-11 Score=107.65 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=110.0
Q ss_pred EEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCC-CCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk-~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
..+|.|..- .+++.+.+ |+++++|+++|||.|.+-- .+. ....++ .+.|.|.. ..|++|..
T Consensus 3 ~~~~~Vp~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~~----~~~~~~~~~r--~v~I~G~~---------~~v~~A~~ 65 (164)
T 2jvz_A 3 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDK--PLRIIGDP---------YKVQQACE 65 (164)
T ss_dssp EEEEEECTT--CHHHHTCTTTHHHHHHHHTSCSEEEECC----CTTSSSSSCE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEechh--heeEEECCChHHHHHHHHHhCCeEEEec----CCCCCCCCce--EEEEEcCH---------HHHHHHHH
Confidence 446777655 47888877 9999999999999986521 110 112233 56788853 47999999
Q ss_pred HHHHHHHccCC--CCCccccccCCCcc-cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCC
Q 008284 183 MVEEMLKQGHA--GFPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSE 259 (571)
Q Consensus 183 eIeEILKE~P~--~~pp~~~p~~~G~k-~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E 259 (571)
.|.+++.+... +.+. +.++.. ....++.||- +++|+|||++|.++|+|+++|||+|.|-....
T Consensus 66 ~I~~ii~e~~~~~~~~~----~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~---- 131 (164)
T 2jvz_A 66 MVMDILRERDQGGFGDR----NEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG---- 131 (164)
T ss_dssp HHHHHTTCSSSCCCSSC----SSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT----
T ss_pred HHHHHHHhccCCCCCCc----cccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC----
Confidence 99999987642 1111 223321 1345666662 36999999999999999999999999975321
Q ss_pred CCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 008284 260 GLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 297 (571)
Q Consensus 260 ~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~ 297 (571)
....-.|.|+|. ++++++|++++++||+.+.
T Consensus 132 ------~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 132 ------TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp ------TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 122357888886 9999999999999998754
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.09 E-value=5.8e-10 Score=101.85 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=102.1
Q ss_pred EEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008284 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (571)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeIe 185 (571)
+|.|..- .++..+.+ |+++++|+++|||.|.+... .....+ -.+.|.|.. +.|++|+.+|.
T Consensus 6 ~~~vp~~--~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~--r~v~I~G~~---------~~v~~A~~~I~ 67 (174)
T 1j4w_A 6 DVPIPRF--AVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPE--RIAQITGPP---------DRAQHAAEIIT 67 (174)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSE--EEEEEEECH---------HHHHHHHHHHH
T ss_pred EEEEChh--heeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCc--cEEEEEeCH---------HHHHHHHHHHH
Confidence 4444432 36777766 99999999999999887431 111223 345788874 47999999999
Q ss_pred HHHHccCC--CCCc-cc---cc---cCC--Cc--ccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEee
Q 008284 186 EMLKQGHA--GFPT-LQ---TV---MGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRG 252 (571)
Q Consensus 186 EILKE~P~--~~pp-~~---~p---~~~--G~--k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRG 252 (571)
+++.+... +..+ +. +. ..+ +. .....++.||- +++|+|||++|.++|+|+++|||+|.|-.
T Consensus 68 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~ 141 (174)
T 1j4w_A 68 DLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQR 141 (174)
T ss_dssp HHHHHHC-----------------------------CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEEC
T ss_pred HHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECC
Confidence 99986521 1000 00 00 000 00 12355677763 46999999999999999999999999986
Q ss_pred cCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 008284 253 RGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293 (571)
Q Consensus 253 RGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL 293 (571)
.... ..+ ...=.|.|+| +.+++++|++||+++|
T Consensus 142 ~~~~------~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 142 NPPP------NAD-PNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CCTT------TSC-TTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CCCC------CCC-CCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 4211 111 1223578888 8999999999999986
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.5e-10 Score=99.89 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=107.7
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++..+.+ |+++++|+++|||.|.+... +..--.+.|.|.. ..|++|..
T Consensus 5 ~~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~---------~~v~~A~~ 64 (160)
T 2jzx_A 5 LTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT---------NAIFKAFA 64 (160)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCH---------HHHHHHHH
Confidence 4456666553 46778866 89999999999999877431 1223456788973 47899999
Q ss_pred HHHHHHHccCCCCCccccccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCC
Q 008284 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 262 (571)
Q Consensus 183 eIeEILKE~P~~~pp~~~p~~~G~k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~ 262 (571)
+|.++|.+......+... .........++.||- +++|+|||++|.++|.|+++|||+|.|.+.. .
T Consensus 65 ~I~~~i~e~~~~~~~~~~--~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~------~- 129 (160)
T 2jzx_A 65 MIIDKLEEDISSSMTNST--AASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM------L- 129 (160)
T ss_dssp HHHHHHHHHHTSCCCSSS--CCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC------S-
T ss_pred HHHHHHHhhccccCCCCc--cCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC------C-
Confidence 999888775221100000 011123456777873 5799999999999999999999999997521 1
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008284 263 GEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (571)
Q Consensus 263 g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~ 294 (571)
.....=.|.|+| +++++++|+++|+++|.
T Consensus 130 --~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 130 --PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp --TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred --CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 112335788888 89999999999999874
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.04 E-value=7.5e-10 Score=101.27 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=106.6
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeec--ccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTR--GrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~A 180 (571)
+..+|.|..- .++..+.| |+++++|+++|||.|.+. +.++|. ..++ .+.|.|.. ..|++|
T Consensus 6 ~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~----~~er--~v~I~G~~---------~~v~~A 68 (178)
T 2anr_A 6 YFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG----TTER--VCLIQGTI---------EALNAV 68 (178)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT----SSEE--EEEEEECH---------HHHHHH
T ss_pred EEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC----CCCc--eEEEEeCH---------HHHHHH
Confidence 3456666553 47788877 899999999999998763 223321 1233 46788863 479999
Q ss_pred HHHHHHHHHccCCCCCccc-----cc--cCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeec
Q 008284 181 AAMVEEMLKQGHAGFPTLQ-----TV--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGR 253 (571)
Q Consensus 181 vaeIeEILKE~P~~~pp~~-----~p--~~~G~k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGR 253 (571)
+.+|.+++.+.+......+ .+ ..+.......++.||- +++|+|||++|.++|.|+++|||+|.|-..
T Consensus 69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 9999999987643211000 00 0001123456777873 478999999999999999999999999754
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008284 254 GSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (571)
Q Consensus 254 GSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~ 294 (571)
... .. ...=.|.|+|. .+++++|+++++++|.
T Consensus 143 ~~~-------~~-~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 143 PDG-------IN-LQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp C------------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCC-------CC-CCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 211 01 12246777776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.86 E-value=5.6e-09 Score=86.56 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=58.5
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...+|.||-+ ++|+|||++|.++|.|+++|||+|.|...|+. ....+-+|.|+| +++++++|+++
T Consensus 14 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--------~~~~er~v~I~G-~~~~v~~A~~~ 78 (85)
T 2opv_A 14 TVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEM 78 (85)
T ss_dssp EEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--------STTSCEEEEEEE-CHHHHHHHHHH
T ss_pred EEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--------CCCCceEEEEEe-CHHHHHHHHHH
Confidence 4567888743 69999999999999999999999999875542 112345799999 99999999999
Q ss_pred HHHHHH
Q 008284 289 AENLLD 294 (571)
Q Consensus 289 iEnLL~ 294 (571)
|++|+.
T Consensus 79 I~~i~~ 84 (85)
T 2opv_A 79 VMDILR 84 (85)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999974
No 10
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.68 E-value=1.9e-08 Score=85.06 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=59.3
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008284 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 286 (571)
Q Consensus 207 k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk 286 (571)
.....+|.||-+ ++|+|||++|.++|+|+++|||+|.|...|... ....-.|.|++ +++++++|+
T Consensus 13 ~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~r~v~I~G-~~~~v~~A~ 77 (94)
T 1x4m_A 13 GNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------TGADKPLRITG-DPYKVQQAK 77 (94)
T ss_dssp CCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------SCSCEEEEEEE-CTTTHHHHH
T ss_pred CcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------CCCceEEEEEe-CHHHHHHHH
Confidence 345677888743 799999999999999999999999998654321 12346788999 999999999
Q ss_pred HHHHHHHH
Q 008284 287 RLAENLLD 294 (571)
Q Consensus 287 ~LiEnLL~ 294 (571)
+||++||.
T Consensus 78 ~~I~~~i~ 85 (94)
T 1x4m_A 78 EMVLELIR 85 (94)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999985
No 11
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.67 E-value=3e-08 Score=81.63 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=58.9
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008284 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (571)
Q Consensus 208 ~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~ 287 (571)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|... . .....-.|.|+| +++++++|++
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---~~~~~~~v~I~G-~~~~v~~A~~ 68 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------L---EGSEDRIITITG-TQDQIQNAQY 68 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------T---SCSSEEEEEEEE-CHHHHHHHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCC-------C---CCCCceEEEEEe-CHHHHHHHHH
Confidence 34567888854 68999999999999999999999999642 0 111235788999 6999999999
Q ss_pred HHHHHHHHHHH
Q 008284 288 LAENLLDTISA 298 (571)
Q Consensus 288 LiEnLL~tV~e 298 (571)
||+++|.....
T Consensus 69 ~I~~~i~~~~g 79 (82)
T 1zzk_A 69 LLQNSVKQYSG 79 (82)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHhccC
Confidence 99999876543
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.63 E-value=2.8e-08 Score=83.73 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=58.5
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008284 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (571)
Q Consensus 208 ~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~ 287 (571)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|..... ....-.|.|++. ++++++|++
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------g~~~r~v~I~G~-~e~v~~A~~ 76 (92)
T 1x4n_A 14 VMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSG----------GLPERSCMLTGT-PESVQSAKR 76 (92)
T ss_dssp CEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCT----------TCSEEEEEEEEC-HHHHHHHHH
T ss_pred CEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCC----------CCCccEEEEEeC-HHHHHHHHH
Confidence 34577888753 7999999999999999999999999986421 122357888886 999999999
Q ss_pred HHHHHHHHH
Q 008284 288 LAENLLDTI 296 (571)
Q Consensus 288 LiEnLL~tV 296 (571)
||+++|...
T Consensus 77 ~I~~~i~~~ 85 (92)
T 1x4n_A 77 LLDQIVEKG 85 (92)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998754
No 13
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.62 E-value=4.4e-08 Score=78.85 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.5
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
..++.||-+ ++|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|+++|
T Consensus 4 ~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------~~~~~~~v~I~G~-~~~v~~A~~~I 69 (76)
T 1dtj_A 4 LVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (76)
T ss_dssp EEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------TTCCEEEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 356777743 689999999999999999999999998643211 1123357888886 99999999999
Q ss_pred HHHHH
Q 008284 290 ENLLD 294 (571)
Q Consensus 290 EnLL~ 294 (571)
+++|.
T Consensus 70 ~~~i~ 74 (76)
T 1dtj_A 70 SQRVT 74 (76)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99874
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.60 E-value=3.2e-08 Score=96.13 Aligned_cols=147 Identities=21% Similarity=0.215 Sum_probs=98.0
Q ss_pred EEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 008284 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (571)
Q Consensus 106 aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeI 184 (571)
..|.|+.- +.++++.+ |.++..|+++||+.|..-- .+... .|.+.+.+.|. .++++|+..|
T Consensus 36 ~~i~IP~~--kig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d~----~~i~kA~~~I 97 (219)
T 2e3u_A 36 EYVKIPKD--RIAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETEDP----LAVWKARDIV 97 (219)
T ss_dssp EEEECCHH--HHHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCSH----HHHHHHHHHH
T ss_pred EEEEeCHH--HhhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCCH----HHHHHHHHHH
Confidence 47778765 47888877 8999999999999986531 23334 45565422221 4799999999
Q ss_pred HHHHHccCCCCCccc---cccCCCcccceeEEEecC---CCCCCC--ceeeeEeCCCchhHHHHHHhhCcEEEEeecCCC
Q 008284 185 EEMLKQGHAGFPTLQ---TVMGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNDQYINHIMNETGATVLLRGRGSG 256 (571)
Q Consensus 185 eEILKE~P~~~pp~~---~p~~~G~k~~qeKIyIpl---d~~P~F--NfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg 256 (571)
+.++... .++.. .-++ ..-+.+-|+. ..-+++ ..+|||||++|.|+|.||+.|||+|+|-|+
T Consensus 98 ~~i~rg~---~~e~g~~ll~dd----~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~--- 167 (219)
T 2e3u_A 98 LAIGRGF---SPERAFRLLNEG----EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGK--- 167 (219)
T ss_dssp HHHHTTC---CHHHHGGGGSTT----CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETT---
T ss_pred HHHhccC---CccccceeccCC----ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCe---
Confidence 9987321 11100 0011 1112233331 112222 258999999999999999999999999651
Q ss_pred CCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 008284 257 NSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295 (571)
Q Consensus 257 ~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~t 295 (571)
.|+|.| +.++++.|++++++||+.
T Consensus 168 --------------~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 168 --------------TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp --------------EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred --------------EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 377777 788999999999999964
No 15
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=7e-08 Score=84.00 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=56.2
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
..+|.||-+ ++|+|||++|.++|+|+++|||+|.|...+ .....-.|.|++. ++++++|++||
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----------~~~~er~V~I~G~-~e~v~~A~~~I 74 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----------GTGPEKIAHIMGP-PDRCEHAARII 74 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSC----------SSSSEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCC----------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 457778744 589999999999999999999999997421 1122357888876 99999999999
Q ss_pred HHHHHHH
Q 008284 290 ENLLDTI 296 (571)
Q Consensus 290 EnLL~tV 296 (571)
++||...
T Consensus 75 ~~ii~~~ 81 (106)
T 2hh3_A 75 NDLLQSL 81 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998754
No 16
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.56 E-value=3.8e-08 Score=82.35 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=58.5
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008284 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (571)
Q Consensus 208 ~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~ 287 (571)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|... .. + ...-.|.|++. ++++++|++
T Consensus 13 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~--~-~~~~~v~I~G~-~e~v~~A~~ 75 (89)
T 1j5k_A 13 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LE--G-SEDRIITITGT-QDQIQNAQY 75 (89)
T ss_dssp EEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CS--S-SSEEEEEEEEE-HHHHHHHHH
T ss_pred eEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCC-------CC--C-CCccEEEEEcC-HHHHHHHHH
Confidence 45677888743 79999999999999999999999999642 00 1 12256888887 999999999
Q ss_pred HHHHHHHHHHHH
Q 008284 288 LAENLLDTISAE 299 (571)
Q Consensus 288 LiEnLL~tV~eE 299 (571)
||+++|......
T Consensus 76 ~I~~~i~e~~g~ 87 (89)
T 1j5k_A 76 LLQNSVKQYSGK 87 (89)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHhhhcC
Confidence 999998765433
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=7.2e-08 Score=83.51 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=56.3
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
..+|.||-+ ++|+|||++|.+||.|+++|||+|.|.....- . .....-.|.|++ +.+++++|++||
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------~-~~~~~r~V~I~G-~~e~v~~A~~~I 73 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPP------N-GDPNFKLFIIRG-SPQQIDHAKQLI 73 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT------T-CCTTEEEEEEES-CHHHHHHHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC------C-CCCCceEEEEEC-CHHHHHHHHHHH
Confidence 467788743 69999999999999999999999999864211 0 111235677887 999999999999
Q ss_pred HHHHHH
Q 008284 290 ENLLDT 295 (571)
Q Consensus 290 EnLL~t 295 (571)
+++|..
T Consensus 74 ~~~i~e 79 (107)
T 2hh2_A 74 EEKIEG 79 (107)
T ss_dssp HHHSCS
T ss_pred HHHHhc
Confidence 999753
No 18
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.54 E-value=6.4e-08 Score=81.94 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=57.8
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
....|.||-+ ++|.|||++|.++|.|+++|||+|.|-..+ ++.-.|.|+|. .+.+++|+++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------------~~~~~V~I~G~-~e~v~~A~~~ 77 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPD------------DPSNQIKITGT-KEGIEKARHE 77 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTT------------SSCCEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCC------------CCCCeEEEEEC-HHHHHHHHHH
Confidence 4567777744 589999999999999999999999996421 11248999998 9999999999
Q ss_pred HHHHHHHHHH
Q 008284 289 AENLLDTISA 298 (571)
Q Consensus 289 iEnLL~tV~e 298 (571)
|++|+.....
T Consensus 78 I~~i~~~~~~ 87 (94)
T 2cte_A 78 VLLISAEQDK 87 (94)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhhcccc
Confidence 9999876543
No 19
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.53 E-value=1e-07 Score=81.26 Aligned_cols=76 Identities=28% Similarity=0.363 Sum_probs=61.9
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
....+.||-+ ++|+|||++|.++|.|+++|||+|.|-..|+. ..-.|.|+|. ++++++|+++
T Consensus 17 vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-----------~~~~V~I~G~-~e~v~~A~~~ 78 (95)
T 2ctm_A 17 VSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----------DPNCVTVTGL-PENVEEAIDH 78 (95)
T ss_dssp CCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-----------CTTEEEEESC-HHHHHHHHHH
T ss_pred EEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCC-----------CCcEEEEEcC-HHHHHHHHHH
Confidence 4567778744 58999999999999999999999999654431 2457999998 6999999999
Q ss_pred HHHHHHHHHHHhcc
Q 008284 289 AENLLDTISAECGA 302 (571)
Q Consensus 289 iEnLL~tV~eEy~a 302 (571)
|++|+....+++..
T Consensus 79 I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 79 ILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999877776643
No 20
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=1.6e-07 Score=80.28 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=60.8
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
+..++.||-+ ++|+|||++|.++|+|+++|||+|.|--.|.. ....-.|.|+|. .+.+++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~---------~~~~~~V~I~G~-~e~v~~A~~~ 80 (97)
T 2ctl_A 17 FKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG---------NQPQDQITITGY-EKNTEAARDA 80 (97)
T ss_dssp CEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTC---------SSCSSEEEEESC-HHHHHHHHHH
T ss_pred eeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCC---------CCCccEEEEEeC-HHHHHHHHHH
Confidence 4567777733 58999999999999999999999999754321 113357999997 9999999999
Q ss_pred HHHHHHHHHHHh
Q 008284 289 AENLLDTISAEC 300 (571)
Q Consensus 289 iEnLL~tV~eEy 300 (571)
|++|+..+.++.
T Consensus 81 I~~iv~e~e~~~ 92 (97)
T 2ctl_A 81 ILRIVGELEQMS 92 (97)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 999998776543
No 21
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.49 E-value=1.5e-07 Score=80.92 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=57.6
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...+|.||-+ ++|+|||++|.++|.|+++|||+|.|-..+.+. ..+.-.|.|+|... .+++|++|
T Consensus 15 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~~~V~I~G~~~-~v~~A~~~ 79 (104)
T 1we8_A 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT--------LLLSRLIKISGTQK-EVAAAKHL 79 (104)
T ss_dssp EEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------SSSEEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------CCCcceEEEEcCHH-HHHHHHHH
Confidence 4577888744 699999999999999999999999997643211 12336788988666 79999999
Q ss_pred HHHHHHHH
Q 008284 289 AENLLDTI 296 (571)
Q Consensus 289 iEnLL~tV 296 (571)
|+++|...
T Consensus 80 I~~~i~e~ 87 (104)
T 1we8_A 80 ILEKVSED 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998653
No 22
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=1.3e-07 Score=78.42 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=58.2
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
..++.||-+ .+|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|++||
T Consensus 4 t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~g~~~r~v~I~G~-~~~v~~A~~~I 69 (87)
T 1ec6_A 4 LVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (87)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------TTSCEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------CCCCceEEEEEcC-HHHHHHHHHHH
Confidence 356677643 689999999999999999999999998642111 0112357888886 99999999999
Q ss_pred HHHHHHHHHH
Q 008284 290 ENLLDTISAE 299 (571)
Q Consensus 290 EnLL~tV~eE 299 (571)
+++|......
T Consensus 70 ~~~i~~~~~~ 79 (87)
T 1ec6_A 70 SQRVTYEQGV 79 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccccc
Confidence 9999875443
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.46 E-value=1e-07 Score=78.31 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=55.6
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|.... +....-.|.|+|. ++++++|++|
T Consensus 6 ~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------~~~~~r~v~I~G~-~~~v~~A~~~ 68 (82)
T 1wvn_A 6 TTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV----------EGSSGRQVTITGS-AASISLAQYL 68 (82)
T ss_dssp EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC----------CCCCceEEEEEcC-HHHHHHHHHH
Confidence 4567788743 699999999999999999999999997521 1123357888885 5999999999
Q ss_pred HHHHHHH
Q 008284 289 AENLLDT 295 (571)
Q Consensus 289 iEnLL~t 295 (571)
|+++|..
T Consensus 69 I~~~i~~ 75 (82)
T 1wvn_A 69 INARLSS 75 (82)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9999864
No 24
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.46 E-value=9.7e-08 Score=77.31 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|... . +....-.|.|+|. ++++++|++|
T Consensus 5 ~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~------~~~~~~~v~I~G~-~~~v~~A~~~ 67 (76)
T 2p2r_A 5 TSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANP----V------EGSTDRQVTITGS-AASISLAQYL 67 (76)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCC----C------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCC----C------CCCCeEEEEEEeC-HHHHHHHHHH
Confidence 3466777743 69999999999999999999999999752 1 1123357889886 9999999999
Q ss_pred HHHHHH
Q 008284 289 AENLLD 294 (571)
Q Consensus 289 iEnLL~ 294 (571)
|+++|.
T Consensus 68 I~~~i~ 73 (76)
T 2p2r_A 68 INVRLS 73 (76)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999874
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.44 E-value=1.4e-07 Score=81.65 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=60.9
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
.+.+.||-+ ++|+|||++|.++|.|+++|||+|.|--.|+ ++-.|.|+|.. +.+++|+++|
T Consensus 18 ~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~------------~~~~V~I~G~~-e~v~~A~~~I 78 (104)
T 2ctk_A 18 TIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL------------QSDIIAITGLA-ANLDRAKAGL 78 (104)
T ss_dssp EEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTT------------TCCEEEEEECH-HHHHHHHHHH
T ss_pred EEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCC------------CcceEEEEcCH-HHHHHHHHHH
Confidence 466777633 6999999999999999999999999965433 12389999985 9999999999
Q ss_pred HHHHHHHHHHhcc
Q 008284 290 ENLLDTISAECGA 302 (571)
Q Consensus 290 EnLL~tV~eEy~a 302 (571)
++|+.....+...
T Consensus 79 ~~i~~e~e~~~~d 91 (104)
T 2ctk_A 79 LERVKELQAEQED 91 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhHHHhHHH
Confidence 9999998877643
No 26
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=1.3e-07 Score=79.11 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=51.4
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...+|.||- +++|.|||++|+++|.|+++|||+|+|-.++ +|+ .+.|++. ++++++|+++
T Consensus 10 ~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------------~~~-~v~ItG~-~e~v~~A~~~ 69 (83)
T 2dgr_A 10 TTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------------KEP-VFAVTGM-PENVDRAREE 69 (83)
T ss_dssp EEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------------SCC-EEEEEEC-TTTHHHHHHH
T ss_pred eEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC------------CCC-eEEEEcC-HHHHHHHHHH
Confidence 456677762 6899999999999999999999999996421 132 3666665 5999999999
Q ss_pred HHHHH
Q 008284 289 AENLL 293 (571)
Q Consensus 289 iEnLL 293 (571)
|++++
T Consensus 70 I~~~i 74 (83)
T 2dgr_A 70 IEAHI 74 (83)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 27
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.39 E-value=2.7e-07 Score=74.50 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=52.8
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
...+.|+-+ ++|.|||++|.++++|+++|||+|.|--.|. .+-.|.|+|. .+.+++|++++
T Consensus 6 ~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~------------~~~~V~I~G~-~~~v~~A~~~I 66 (71)
T 1vig_A 6 YVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE------------KSNLIRIEGD-PQGVQQAKREL 66 (71)
T ss_dssp EEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS------------SSEEEEEEES-SHHHHHHHHHH
T ss_pred EEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC------------cccEEEEEcC-HHHHHHHHHHH
Confidence 456667633 6999999999999999999999999864331 2247999998 68999999999
Q ss_pred HHHH
Q 008284 290 ENLL 293 (571)
Q Consensus 290 EnLL 293 (571)
++|+
T Consensus 67 ~~i~ 70 (71)
T 1vig_A 67 LELA 70 (71)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 9985
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.33 E-value=3e-07 Score=74.45 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=54.4
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|+|. ++++++|+++
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~------------~er~v~I~G~-~~~v~~A~~~ 65 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC------------PERIITLAGP-TNAIFKAFAM 65 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC------------SEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC------------CcEEEEEEeC-HHHHHHHHHH
Confidence 345667763 36999999999999999999999999975321 1235888888 9999999999
Q ss_pred HHHHHH
Q 008284 289 AENLLD 294 (571)
Q Consensus 289 iEnLL~ 294 (571)
|+++|.
T Consensus 66 I~~~l~ 71 (73)
T 2axy_A 66 IIDKLE 71 (73)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999885
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.23 E-value=1e-06 Score=84.35 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=93.8
Q ss_pred EEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008284 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (571)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeIe 185 (571)
.|.|.+- ++.+++.+ |++...|++.+|+.|.... .++..- |.....+.|. .++.+|...|+
T Consensus 7 ~i~VP~~--rvg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~--i~t~~~t~dp----~~i~KA~dlI~ 68 (191)
T 1tua_A 7 YVKVKPE--RLGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVI--VEPEAEGIPP----VNLMKAAEVVK 68 (191)
T ss_dssp EEECCGG--GHHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEE--EEESSTTSCH----HHHHHHHHHHH
T ss_pred EEECCHH--HhhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEE--EEeCCCCCCH----HHHHHHHHHHH
Confidence 4555544 35556655 8999999999999987643 244443 3422222222 36888999998
Q ss_pred HHHHccCCCCCccccc-cCCCcccceeEEEecCCCC-CC-----CceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCC
Q 008284 186 EMLKQGHAGFPTLQTV-MGNGVQAMSTSVFLGFDAD-AS-----LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS 258 (571)
Q Consensus 186 EILKE~P~~~pp~~~p-~~~G~k~~qeKIyIpld~~-P~-----FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~ 258 (571)
.+...-. ++.... .+. ...-+.+.|+ .+ .. -..+|||||++|.|++.||+.|||+|.|-|+
T Consensus 69 ai~rgf~---~e~A~~Ll~D--d~~~e~i~i~--~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~----- 136 (191)
T 1tua_A 69 AISLGFP---PEKAFRLLEE--DQILVVVDLK--QVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY----- 136 (191)
T ss_dssp HHHHTCC---HHHHGGGGST--TEEEEEEETH--HHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS-----
T ss_pred HHHcCCC---HHHhhhcccC--cceeEEEEcc--cccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC-----
Confidence 8765321 100000 000 0112223232 11 00 1258999999999999999999999999752
Q ss_pred CCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 008284 259 EGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295 (571)
Q Consensus 259 E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~t 295 (571)
.++|.| +++.++.|+..+++||..
T Consensus 137 ------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 ------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp ------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred ------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 577777 789999999999999964
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.18 E-value=4.1e-06 Score=75.86 Aligned_cols=137 Identities=15% Similarity=0.264 Sum_probs=90.8
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
|+.++.|..-+ +...+.+ |+++..|++++|..|. . +. .++-.| .+.+.+. ..|.+|
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~-~~------~~~~~~-i~~~~~p--------~~v~~~-- 60 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---D-LD------EDTCTF-HIYGEDQ--------DAVKKA-- 60 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---E-EE------TTTTEE-EEEESSH--------HHHHHH--
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---c-cC------CCchhe-eeccCCH--------HHHHHH--
Confidence 45677776654 7778866 9999999999994332 1 11 123334 4566542 245443
Q ss_pred HHHHHHHccCCCCCccccccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCc-EEEEeecCCCCCCCC
Q 008284 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA-TVLLRGRGSGNSEGL 261 (571)
Q Consensus 183 eIeEILKE~P~~~pp~~~p~~~G~k~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGa-KV~IRGRGSg~~E~~ 261 (571)
+++|.- .+..|.||-+ .+|++||.+|.++|.|++.||| +|.|.+.....
T Consensus 61 --~~~l~~------------------~e~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~---- 110 (144)
T 2qnd_A 61 --RSFLEF------------------AEDVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN---- 110 (144)
T ss_dssp --HHHHCE------------------EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----
T ss_pred --HHhhhc------------------ceEEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----
Confidence 333321 1256667632 6899999999999999999997 99999853221
Q ss_pred CCCCCCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008284 262 QGEEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 296 (571)
Q Consensus 262 ~g~EsdEPL-HV~Isa~~~e~v~kAk~LiEnLL~tV 296 (571)
...++.+ -|.|+| +.+++++|++|++++|+.+
T Consensus 111 --~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 111 --VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp --CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred --ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 1112333 255665 8899999999999999753
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.02 E-value=8.4e-06 Score=72.92 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=53.8
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008284 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (571)
Q Consensus 211 eKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiE 290 (571)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. .....-.|.|+| +++.+++|+.+|.
T Consensus 4 ~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~~r~v~I~G-~~~~v~~A~~~I~ 68 (164)
T 2jvz_A 4 QEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEMVM 68 (164)
T ss_dssp EEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--------SSSSCEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC--------CCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 46667643 59999999999999999999999999532210 112234688888 8899999999999
Q ss_pred HHHHH
Q 008284 291 NLLDT 295 (571)
Q Consensus 291 nLL~t 295 (571)
+++..
T Consensus 69 ~ii~e 73 (164)
T 2jvz_A 69 DILRE 73 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98753
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.96 E-value=5.9e-06 Score=75.39 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=54.2
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008284 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (571)
Q Consensus 211 eKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiE 290 (571)
.++.||- +.+|+|||++|.++|+|+++|||+|.|... + .....-.|.|++. .+.+++|+++|+
T Consensus 5 ~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~-----~~~~~r~v~I~G~-~~~v~~A~~~I~ 67 (174)
T 1j4w_A 5 IDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----D-----GTTPERIAQITGP-PDRAQHAAEIIT 67 (174)
T ss_dssp EEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC-----T-----TSCSEEEEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC-----C-----CCCCccEEEEEeC-HHHHHHHHHHHH
Confidence 4566663 369999999999999999999999999642 0 0112246778877 999999999999
Q ss_pred HHHHHH
Q 008284 291 NLLDTI 296 (571)
Q Consensus 291 nLL~tV 296 (571)
++|...
T Consensus 68 ~~~~~~ 73 (174)
T 1j4w_A 68 DLLRSV 73 (174)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998765
No 33
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.95 E-value=5.5e-06 Score=70.94 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=55.9
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhh-CcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ET-GaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~ 287 (571)
.++.+.||-+ +.+.|||++|.+++.|+++| ||+|.|--.|+. .-.|.|.|.+. .+++|++
T Consensus 17 vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~------------~~~V~I~G~~~-~v~~A~~ 77 (95)
T 2ctj_A 17 AEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG------------SDTVVIRGPSS-DVEKAKK 77 (95)
T ss_dssp CCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT------------CCEEEEESCHH-HHHHHHH
T ss_pred EEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC------------cceEEEEcCHH-HHHHHHH
Confidence 3566777643 58899999999999999999 999988643321 24799999887 9999999
Q ss_pred HHHHHHHHH
Q 008284 288 LAENLLDTI 296 (571)
Q Consensus 288 LiEnLL~tV 296 (571)
+|++|+..+
T Consensus 78 ~I~~iv~e~ 86 (95)
T 2ctj_A 78 QLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998654
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.84 E-value=4.9e-06 Score=71.59 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=51.9
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcE-EEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaK-V~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
.+.+.|+-+ .+|.+|||+|.++|.|+++|||+ |-|- ++.=.|.|.+.+.+.+++|+++
T Consensus 16 i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------------eddG~V~I~g~~~ea~~~A~~~ 74 (91)
T 2cpq_A 16 HEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELD---------------EDTGTFRIYGESADAVKKARGF 74 (91)
T ss_dssp EEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEE---------------TTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEE---------------cCCCEEEEEECCHHHHHHHHHH
Confidence 345556533 59999999999999999999998 9993 1235799999999999999999
Q ss_pred HHHHH
Q 008284 289 AENLL 293 (571)
Q Consensus 289 iEnLL 293 (571)
++++-
T Consensus 75 I~~ie 79 (91)
T 2cpq_A 75 LEFVE 79 (91)
T ss_dssp HSCCC
T ss_pred HHhhh
Confidence 98764
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.69 E-value=2.4e-05 Score=70.19 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=53.5
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
..++.||- +.+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|+|. .+.+++|+.+|
T Consensus 6 ~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~------------~~r~v~I~G~-~~~v~~A~~~I 66 (160)
T 2jzx_A 6 TIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC------------PERIITLAGP-TNAIFKAFAMI 66 (160)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT------------TEEEEEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC------------CceEEEEEeC-HHHHHHHHHHH
Confidence 45666663 36999999999999999999999999975321 1246778886 89999999999
Q ss_pred HHHHHH
Q 008284 290 ENLLDT 295 (571)
Q Consensus 290 EnLL~t 295 (571)
.+++..
T Consensus 67 ~~~i~e 72 (160)
T 2jzx_A 67 IDKLEE 72 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.66 E-value=3.7e-05 Score=69.11 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=53.0
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008284 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (571)
Q Consensus 211 eKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiE 290 (571)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. ....--|.|+| +++++.+|+.+|.
T Consensus 5 ~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------~~~~r~v~I~G-~~e~v~~A~~~I~ 68 (163)
T 3krm_A 5 VQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP---------DSKVRMVIITG-PPEAQFKAQGRIY 68 (163)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---------TCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---------CCCceEEEEEc-CHHHHHHHHHHHH
Confidence 45566633 68999999999999999999999999753211 11223577777 8999999999998
Q ss_pred HHHHH
Q 008284 291 NLLDT 295 (571)
Q Consensus 291 nLL~t 295 (571)
+++..
T Consensus 69 ~~~~e 73 (163)
T 3krm_A 69 GKLKE 73 (163)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 37
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=0.00012 Score=65.37 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=58.8
Q ss_pred eEEEEEEcC--C-CCc--ccceeec-chhHHHHHHhHhCCeEeeccc---ccCCCCCCCCCCCeEEEEeeccchhhHHHH
Q 008284 103 IIAREIVIN--D-SES--SVRYKLT-KRHTQEEIQKCTGAVVITRGK---YRLPNAPPDGEKPLYLHISAGAHLKETAER 173 (571)
Q Consensus 103 ~f~aEIEIN--D-lPq--~vRy~LT-Kg~Tq~eIqe~TGA~VtTRGr---YyPPgk~~~~EpPLYL~Ieg~Te~kdt~ER 173 (571)
++.+.|.|. + +|. ..|.+|. +|.|++.|+++|||.|..||+ |+-+......+-+||++|++.+.
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~------- 83 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP------- 83 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH-------
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH-------
Confidence 456666554 2 443 4566664 599999999999999999876 22222233456799999999986
Q ss_pred HHHHHHHHHHHHHHHHc
Q 008284 174 ILAVDHAAAMVEEMLKQ 190 (571)
Q Consensus 174 ikaVd~AvaeIeEILKE 190 (571)
+.+++|+.+|++|+..
T Consensus 84 -e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 84 -EGLAAAKKLCENLLQT 99 (119)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhc
Confidence 5899999999999864
No 38
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.60 E-value=4e-05 Score=69.95 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=52.9
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
...++.||- +++|.|||++|.++|+|+++|||+|.|...+-.. . ...| -.|.|+|. .+.+++|+++
T Consensus 6 ~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-~-----~~~e-r~v~I~G~-~~~v~~A~~~ 71 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-P-----GTTE-RVCLIQGT-IEALNAVHGF 71 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-T-----TSSE-EEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-C-----CCCC-ceEEEEeC-HHHHHHHHHH
Confidence 345667763 3799999999999999999999999996532111 0 1111 24667775 8999999999
Q ss_pred HHHHHH
Q 008284 289 AENLLD 294 (571)
Q Consensus 289 iEnLL~ 294 (571)
+++++.
T Consensus 72 I~~~~~ 77 (178)
T 2anr_A 72 IAEKIR 77 (178)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998874
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.52 E-value=0.00014 Score=65.80 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=57.2
Q ss_pred EEEEEc--CCCCc---ccceeecchhHHHHHHhHhCCeEeecccccCC-CC--C------CCCCCCeEEEEeeccchhhH
Q 008284 105 AREIVI--NDSES---SVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NA--P------PDGEKPLYLHISAGAHLKET 170 (571)
Q Consensus 105 ~aEIEI--NDlPq---~vRy~LTKg~Tq~eIqe~TGA~VtTRGrYyPP-gk--~------~~~EpPLYL~Ieg~Te~kdt 170 (571)
...|.| .++|. --|.+=.+|.|+++|+++|||.|.+||+.--. ++ . ...+-+||++|++.+.
T Consensus 8 ~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~---- 83 (131)
T 1k1g_A 8 SDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM---- 83 (131)
T ss_dssp EEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH----
T ss_pred EEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH----
Confidence 444554 44552 12555578999999999999999998864211 11 1 1235699999999875
Q ss_pred HHHHHHHHHHHHHHHHHHHcc
Q 008284 171 AERILAVDHAAAMVEEMLKQG 191 (571)
Q Consensus 171 ~ERikaVd~AvaeIeEILKE~ 191 (571)
+.+++|+++|+++|+..
T Consensus 84 ----e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 ----ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp ----HHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHHhcc
Confidence 57999999999999874
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=80.86 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=50.1
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008284 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (571)
Q Consensus 211 eKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiE 290 (571)
..+-|+.+ .+|.||||+|.++|.|+++|||+|.|- +.=.|.|.+.+.+.+++|+++|+
T Consensus 569 ~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------------d~G~V~I~~~~~~~~~~A~~~I~ 626 (630)
T 3u1k_A 569 ETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQV----------------DEETFSVFAPTPSAMHEARDFIT 626 (630)
T ss_dssp EEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEEC----------------SSSEEEEEESSHHHHHHHHHHTT
T ss_pred EEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEc----------------CCcEEEEEeCCHHHHHHHHHHHH
Confidence 44556533 489999999999999999999999874 12479999999999999999999
Q ss_pred HHHH
Q 008284 291 NLLD 294 (571)
Q Consensus 291 nLL~ 294 (571)
+|+.
T Consensus 627 ~i~~ 630 (630)
T 3u1k_A 627 EICK 630 (630)
T ss_dssp C---
T ss_pred HHhC
Confidence 8863
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.03 E-value=0.0014 Score=56.70 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=56.4
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHh-hCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~E-TGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~ 287 (571)
...+|.||-+ |.+.|||.+|+++|+|+.+ ++|+|.|=. + .--|.|.|+ .+.|++|+.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~---~~~ItI~G~-~~~V~~a~~ 84 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE------------G---EDKITLEGP-TEDVSVAQE 84 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS------------S---SCEEEEEEC-HHHHHHHHH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC------------C---CCEEEEECC-HHHHHHHHH
Confidence 4566667633 5789999999999999996 688886643 1 126999999 999999999
Q ss_pred HHHHHHHHHHHHhc
Q 008284 288 LAENLLDTISAECG 301 (571)
Q Consensus 288 LiEnLL~tV~eEy~ 301 (571)
.++.|++.+.++..
T Consensus 85 ~I~~~v~el~~~~~ 98 (102)
T 2ctf_A 85 QIEGMVKDLINRSG 98 (102)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998887643
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.68 E-value=0.0011 Score=74.32 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=13.8
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008284 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTI 296 (571)
Q Consensus 225 fvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV 296 (571)
.++.||||+|.+||.|++||||+|-|. |.-.|.|.+.+.+.+++|+++|+.|+...
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~----------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN----------------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp --------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE----------------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 488999999999999999999999754 23568899999999999999999998643
No 43
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.59 E-value=0.0039 Score=65.24 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=44.5
Q ss_pred eeeEeCCCc--hhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 008284 226 AARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293 (571)
Q Consensus 226 vGrIIGPrG--stlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL 293 (571)
...|||.+| ..|++|+++|||+|.+-..|+... .....-.|.|+| ..++|.+|++.+++||
T Consensus 197 H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d------~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 197 VDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE------TRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp HHHHTCCTTSCCHHHHHHHHHTCEEECC---------------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred HHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc------ccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 667999999 556999999999999876544310 112235688888 9999999999999987
No 44
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.52 E-value=0.0029 Score=58.11 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=47.4
Q ss_pred cchhHHHHHHhHhCCeEeecccccCC---------CCC--CCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHc
Q 008284 122 TKRHTQEEIQKCTGAVVITRGKYRLP---------NAP--PDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQ 190 (571)
Q Consensus 122 TKg~Tq~eIqe~TGA~VtTRGrYyPP---------gk~--~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeIeEILKE 190 (571)
-+|.|++.|+++|||.|..||+=--- +.+ ...+-|||++|++.+. .+.++ ..+++|+++|+.+|..
T Consensus 25 PrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~-~~~~~--~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 25 PRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA-QNRAE--LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp TTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC-CHHHH--HHHHHHHHHHHHHSSC
T ss_pred CCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc-hhhHH--HHHHHHHHHHHHHCCC
Confidence 47999999999999999999852110 000 1356789999999764 11111 3699999999999754
No 45
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.38 E-value=0.0027 Score=61.69 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=51.6
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCC----HHHHHHHH
Q 008284 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN----PKSLEEAK 286 (571)
Q Consensus 211 eKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~----~e~v~kAk 286 (571)
.+|.||-+ -+|.|||++|.+++.|+++|||+|.|--. .=.|.|.+.+ ++.+++|+
T Consensus 36 ~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~---------------~g~V~I~~~~~t~d~~~i~kA~ 94 (219)
T 2e3u_A 36 EYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSE---------------TGEVWITSTKETEDPLAVWKAR 94 (219)
T ss_dssp EEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTT---------------TCEEEEEECTTCCSHHHHHHHH
T ss_pred EEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcC---------------CCEEEEecCCCCCCHHHHHHHH
Confidence 56777743 58999999999999999999999999521 1247788776 99999999
Q ss_pred HHHHHHH
Q 008284 287 RLAENLL 293 (571)
Q Consensus 287 ~LiEnLL 293 (571)
++|+.|.
T Consensus 95 ~~I~~i~ 101 (219)
T 2e3u_A 95 DIVLAIG 101 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.20 E-value=0.0029 Score=66.21 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=52.7
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCc--hhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHH
Q 008284 207 QAMSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEE 284 (571)
Q Consensus 207 k~~qeKIyIpld~~P~FNfvGrIIGPrG--stlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~k 284 (571)
...+.++.|+- .|...|||.+| ++|++|++||||+|.+=-++.....+ ...---|.|+| ..++|++
T Consensus 28 ~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~-----~~ks~~VtItG-~~enVE~ 95 (376)
T 3n89_A 28 TRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTP-----DPFAQQVTITG-YFGDVDR 95 (376)
T ss_dssp TEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSC-----CTTTTEEEEEE-EHHHHHH
T ss_pred CEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCC-----cCCCCeEEEEc-CHHHHHH
Confidence 45566777763 36788999999 99999999999999995443111100 01112466665 6789999
Q ss_pred HHHHHHHHH
Q 008284 285 AKRLAENLL 293 (571)
Q Consensus 285 Ak~LiEnLL 293 (571)
||+.+.+|+
T Consensus 96 AR~~I~~l~ 104 (376)
T 3n89_A 96 ARMLMRRNC 104 (376)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcC
Confidence 999998863
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.08 E-value=0.0034 Score=56.71 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=47.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008284 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (571)
Q Consensus 209 ~qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~L 288 (571)
+++.+.||-+ ++|.+||++|++++.|++|+| |.|-- .+++|--+.+.+.+++.+.+|+.|
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~------------~~~~~~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAID------------LDEDTCTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEE------------EETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEec------------cCCCchheeeccCCHHHHHHHHHh
Confidence 4567777644 699999999999999999999 44321 123556688899999999999876
Q ss_pred H
Q 008284 289 A 289 (571)
Q Consensus 289 i 289 (571)
+
T Consensus 64 l 64 (144)
T 2qnd_A 64 L 64 (144)
T ss_dssp H
T ss_pred h
Confidence 4
No 48
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=95.18 E-value=0.067 Score=43.69 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=52.7
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++..+.+ |.++++|+++|||.|.+... .++...-.+.|.|.. +.+++|+.
T Consensus 7 ~~~~i~Vp~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 68 (82)
T 1zzk_A 7 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ---------DQIQNAQY 68 (82)
T ss_dssp EEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--hcCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCH---------HHHHHHHH
Confidence 4667888765 48999987 89999999999999887531 112222456888953 47999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|++++++.
T Consensus 69 ~I~~~i~~~ 77 (82)
T 1zzk_A 69 LLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998763
No 49
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=95.15 E-value=0.062 Score=44.18 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=51.3
Q ss_pred EEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008284 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (571)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Avae 183 (571)
..+|.|..- .++..+.+ |+|+++|+++|||.|.....-.+ ....++. +.|.| +. ..+++|+.+
T Consensus 15 ~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~--v~I~G-~~--------~~v~~A~~~ 78 (85)
T 2opv_A 15 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKP--LRIIG-DP--------YKVQQACEM 78 (85)
T ss_dssp EEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEE--EEEEE-CH--------HHHHHHHHH
T ss_pred EEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceE--EEEEe-CH--------HHHHHHHHH
Confidence 568888764 58889977 99999999999999877441111 1234554 46788 43 479999999
Q ss_pred HHHHHHc
Q 008284 184 VEEMLKQ 190 (571)
Q Consensus 184 IeEILKE 190 (571)
|++++++
T Consensus 79 I~~i~~e 85 (85)
T 2opv_A 79 VMDILRE 85 (85)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9999864
No 50
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.73 E-value=0.039 Score=47.57 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=52.7
Q ss_pred EEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 008284 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (571)
Q Consensus 106 aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeI 184 (571)
.+|.|..- .++.+|-| |+++++|+++|||.|.+...-.+ ..+..--.+.|.|.. +.|++|+.+|
T Consensus 9 ~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~~---------e~v~~A~~~I 73 (107)
T 2hh2_A 9 MTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGSP---------QQIDHAKQLI 73 (107)
T ss_dssp EEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESCH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECCH---------HHHHHHHHHH
Confidence 36677654 58899987 89999999999999987542211 112223456888943 4799999999
Q ss_pred HHHHHccCC
Q 008284 185 EEMLKQGHA 193 (571)
Q Consensus 185 eEILKE~P~ 193 (571)
++++.+...
T Consensus 74 ~~~i~e~~~ 82 (107)
T 2hh2_A 74 EEKIEGPLC 82 (107)
T ss_dssp HHHSCSCCC
T ss_pred HHHHhcccc
Confidence 999988653
No 51
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=94.50 E-value=0.053 Score=43.25 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008284 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (571)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Avae 183 (571)
..+|.|..- .++..+.+ |.++++|++.|||.|.+... +...++..--.+.|.|.. ..+++|+.+
T Consensus 4 ~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~---------~~v~~A~~~ 68 (76)
T 1dtj_A 4 LVEMAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYL 68 (76)
T ss_dssp EEEEEEETT--THHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH---------HHHHHHHHH
T ss_pred EEEEEEChH--HcceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH---------HHHHHHHHH
Confidence 346667655 47888877 89999999999999877431 111123334556888974 479999999
Q ss_pred HHHHHHc
Q 008284 184 VEEMLKQ 190 (571)
Q Consensus 184 IeEILKE 190 (571)
|.+++.+
T Consensus 69 I~~~i~e 75 (76)
T 1dtj_A 69 ISQRVTY 75 (76)
T ss_dssp HHHHCC-
T ss_pred HHHHHhc
Confidence 9998765
No 52
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.38 E-value=0.051 Score=43.63 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++..+.+ |.++++|++.|||.|.+... . ++..--.+.|.|.. ..+++|+.
T Consensus 5 ~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~-----~~~~~~~v~I~G~~---------~~v~~A~~ 66 (76)
T 2p2r_A 5 TSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP--V-----EGSTDRQVTITGSA---------ASISLAQY 66 (76)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC--C-----TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC--C-----CCCCeEEEEEEeCH---------HHHHHHHH
Confidence 3556777654 47888877 89999999999999987641 1 12223356788863 47999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|.+++.++
T Consensus 67 ~I~~~i~~E 75 (76)
T 2p2r_A 67 LINVRLSSE 75 (76)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHcc
Confidence 999998765
No 53
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.29 E-value=0.052 Score=44.25 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++..+.+ |+++++|+++|||.|.+... .++..--.+.|.|.. ..+++|+.
T Consensus 6 ~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~---------~~v~~A~~ 67 (82)
T 1wvn_A 6 TTHELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSA---------ASISLAQY 67 (82)
T ss_dssp EEEEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEchH--hccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCH---------HHHHHHHH
Confidence 3557777665 47888877 89999999999999987542 112223346778875 37999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|.+++.++
T Consensus 68 ~I~~~i~~~ 76 (82)
T 1wvn_A 68 LINARLSSE 76 (82)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhh
Confidence 999998776
No 54
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.06 E-value=0.14 Score=43.72 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=55.4
Q ss_pred CCCceeEEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHH
Q 008284 98 VQDELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILA 176 (571)
Q Consensus 98 ~~de~~f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERika 176 (571)
+.+......+|.|..- .++.++.+ |.++++|+++|||.|.+...- ++ ....++ .+.|.|..+ .
T Consensus 9 ~s~~ap~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~--~~-~~~~~~--~V~I~G~~~---------~ 72 (104)
T 1we8_A 9 LTENTPVFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCDKES--EG-TLLLSR--LIKISGTQK---------E 72 (104)
T ss_dssp CSSSCEEEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEECCSS--CC-SSSSEE--EEEEEEEHH---------H
T ss_pred cCCCCCEEEEEEEChh--heeeeECCCCHHHHHHHHHHCCEEEEecCC--CC-CCCCcc--eEEEEcCHH---------H
Confidence 3344445678888655 48899987 999999999999998874321 00 011233 467788753 6
Q ss_pred HHHHHHHHHHHHHccC
Q 008284 177 VDHAAAMVEEMLKQGH 192 (571)
Q Consensus 177 Vd~AvaeIeEILKE~P 192 (571)
+++|+.+|++++.+++
T Consensus 73 v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 73 VAAAKHLILEKVSEDE 88 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCh
Confidence 8999999999998753
No 55
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.06 E-value=0.061 Score=45.00 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+...- ++..--.+.|.|.. +.|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~---------e~v~~A~~ 76 (92)
T 1x4n_A 15 MTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP---------ESVQSAKR 76 (92)
T ss_dssp EEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH---------HHHHHHHH
Confidence 4667888665 47888877 899999999999999875421 12233456788873 47999999
Q ss_pred HHHHHHHccC
Q 008284 183 MVEEMLKQGH 192 (571)
Q Consensus 183 eIeEILKE~P 192 (571)
+|++++.+..
T Consensus 77 ~I~~~i~~~~ 86 (92)
T 1x4n_A 77 LLDQIVEKGR 86 (92)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999998864
No 56
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.91 E-value=0.064 Score=45.03 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++.++-| |+++++|+++|||.|.+...-.+ ....++. +.|.|.. +.|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~--v~I~G~~---------~~v~~A~~ 78 (94)
T 1x4m_A 15 AVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKP--LRITGDP---------YKVQQAKE 78 (94)
T ss_dssp EEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEE--EEEEECT---------TTHHHHHH
T ss_pred EEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceE--EEEEeCH---------HHHHHHHH
Confidence 4668888765 58888877 99999999999999876321110 1123444 5778844 37999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|++++++.
T Consensus 79 ~I~~~i~~~ 87 (94)
T 1x4m_A 79 MVLELIRDQ 87 (94)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHhcc
Confidence 999999874
No 57
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.70 E-value=0.093 Score=45.50 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=51.0
Q ss_pred EEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 008284 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (571)
Q Consensus 106 aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeI 184 (571)
.+|.|..- .++.+|-| |+++++|+++|||.|.+.. .. +...-..+.|+|.. +.+++|+.+|
T Consensus 13 ~~i~Ip~~--~iG~IIGkgG~~Ik~I~~~TGakI~I~~-----~~--~~~~er~V~I~G~~---------e~v~~A~~~I 74 (106)
T 2hh3_A 13 IDVPVPRH--SVGVVIGRSGEMIKKIQNDAGVRIQFKQ-----DD--GTGPEKIAHIMGPP---------DRCEHAARII 74 (106)
T ss_dssp EEEEEETT--THHHHHTTTTHHHHHHHHHHTCEEEECS-----SC--SSSSEEEEEEESSH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHHCcEEEEec-----CC--CCCceeEEEEEeCH---------HHHHHHHHHH
Confidence 47777655 37888877 9999999999999998743 11 12222346778863 4799999999
Q ss_pred HHHHHccC
Q 008284 185 EEMLKQGH 192 (571)
Q Consensus 185 eEILKE~P 192 (571)
++++.+..
T Consensus 75 ~~ii~~~~ 82 (106)
T 2hh3_A 75 NDLLQSLR 82 (106)
T ss_dssp HHHHHHHC
T ss_pred HHHHhccc
Confidence 99998764
No 58
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=93.58 E-value=0.081 Score=43.90 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+... . ++..--.+.|.|.. +.+++|+.
T Consensus 14 ~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-~------~~~~~~~v~I~G~~---------e~v~~A~~ 75 (89)
T 1j5k_A 14 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-L------EGSEDRIITITGTQ---------DQIQNAQY 75 (89)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-C------SSSSEEEEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-C------CCCCccEEEEEcCH---------HHHHHHHH
Confidence 5667877654 47888877 99999999999999887531 1 12222356788873 47999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|++++++.
T Consensus 76 ~I~~~i~e~ 84 (89)
T 1j5k_A 76 LLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998874
No 59
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.24 E-value=0.13 Score=42.75 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|.+ ..+++.+-| |+|+++|+++|||.|.+-. . ++++ .+.|+|..+ .+++|+.
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~---~~~~--~v~ItG~~e---------~v~~A~~ 68 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R---DKEP--VFAVTGMPE---------NVDRARE 68 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S---SSCC--EEEEEECTT---------THHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C---CCCC--eEEEEcCHH---------HHHHHHH
Confidence 466888887 469999987 9999999999999987632 1 1233 367889864 7999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|.+++...
T Consensus 69 ~I~~~i~~r 77 (83)
T 2dgr_A 69 EIEAHITLR 77 (83)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 999987653
No 60
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.17 E-value=0.19 Score=42.30 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|+.- ..|+++.+ |.++++|+++|||.|..- +.. +.+ -.+.|.|. . ..+++|+.
T Consensus 17 ~t~~i~Ip~~--~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~~~--~~~--~~V~I~G~-~--------e~v~~A~~ 76 (94)
T 2cte_A 17 ASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQIP-----RPD--DPS--NQIKITGT-K--------EGIEKARH 76 (94)
T ss_dssp EEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBCC-----CTT--SSC--CEEEEEEC-H--------HHHHHHHH
T ss_pred eEEEEEEChH--HeeeeECCCChhHHHHHHHHCCEEEeC-----CCC--CCC--CeEEEEEC-H--------HHHHHHHH
Confidence 4678889866 48999988 799999999999998652 210 112 25678897 3 57999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|++++.+.
T Consensus 77 ~I~~i~~~~ 85 (94)
T 2cte_A 77 EVLLISAEQ 85 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998764
No 61
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.02 E-value=0.16 Score=47.06 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Q 008284 222 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 301 (571)
Q Consensus 222 ~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~eEy~ 301 (571)
+-.+++.|+||+|+.|++||..|++.|+|.=-.| ..---|.|-|.. ..=.+|+.|+.+|.+--++..-
T Consensus 63 E~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-----------~g~tEVtIfG~~-~~Q~rak~MI~sLA~~hr~~~~ 130 (140)
T 3v69_A 63 EPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-----------ERRAEIWIFGPP-PFRRDVDRMLTDLAHYCRMKLM 130 (140)
T ss_dssp CGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-----------TSCEEEEEESCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcccCCCcCccchHHhhcceeEEEeccCC-----------CCcEEEEEECCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999983211 122457777654 4446789999999888776653
No 62
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.96 E-value=0.028 Score=62.99 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008284 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (571)
Q Consensus 225 fvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~ 294 (571)
-++.+|||+|.+++.|..+||++|-|... -.++|++.+.+.+++|+++++.|+.
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~d----------------g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDD----------------GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCC----------------ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999977753 2477888888999999999988864
No 63
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=91.82 E-value=0.34 Score=39.81 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=49.2
Q ss_pred EEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecc--cccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008284 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRG--KYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (571)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRG--rYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Avae 183 (571)
+|.|..- .++..+.+ |.++++|++.|||.|.+.. .++| +..--.+.|.|.. ..+++|+.+
T Consensus 6 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~------g~~~r~v~I~G~~---------~~v~~A~~~ 68 (87)
T 1ec6_A 6 EIAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKKGEFLP------GTRNRRVTITGSP---------AATQAAQYL 68 (87)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST------TSCEEEEEEESSH---------HHHHHHHHH
T ss_pred EEEEChH--HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC------CCCceEEEEEcCH---------HHHHHHHHH
Confidence 4555443 46777877 8999999999999987743 2222 3334456888973 479999999
Q ss_pred HHHHHHcc
Q 008284 184 VEEMLKQG 191 (571)
Q Consensus 184 IeEILKE~ 191 (571)
|.+++.+.
T Consensus 69 I~~~i~~~ 76 (87)
T 1ec6_A 69 ISQRVTYE 76 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99998764
No 64
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=91.54 E-value=0.23 Score=39.72 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=49.2
Q ss_pred EEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008284 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (571)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Avae 183 (571)
..+|.|+.- ..|..+.+ |.++.+|+++|||.|.. ++. ++..-.+.|.|.. +.+++|+.+
T Consensus 6 ~~~i~I~~~--~ig~iIG~gG~~I~~I~e~tg~~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~~~ 65 (71)
T 1vig_A 6 YVEINIDHK--FHRHLIGKSGANINRIKDQYKVSVRI-----PPD----SEKSNLIRIEGDP---------QGVQQAKRE 65 (71)
T ss_dssp EEEEEECSS--HHHHHTCSSCCHHHHHHHHTCCEEEC-----CCC----CSSSEEEEEEESS---------HHHHHHHHH
T ss_pred EEEEEECHH--HhhhhcCCCCccHHHHHHHHCCEEEE-----CCC----CCcccEEEEEcCH---------HHHHHHHHH
Confidence 567888876 48999977 99999999999999854 221 2233467888984 479999999
Q ss_pred HHHHH
Q 008284 184 VEEML 188 (571)
Q Consensus 184 IeEIL 188 (571)
|++++
T Consensus 66 I~~i~ 70 (71)
T 1vig_A 66 LLELA 70 (71)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 98874
No 65
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=91.52 E-value=0.078 Score=59.82 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=20.6
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 008284 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293 (571)
Q Consensus 225 fvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~LiEnLL 293 (571)
.+|.+|||+|.++|.|+++||++|-|-..| .|+|++.+.+.+++|+++++.|.
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG----------------~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDDG----------------TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -------------CTTCCCCCSCC------------------------CCCBSSHHHHCC---------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCCc----------------eEEEecCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999776432 46677788888888988888876
No 66
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.10 E-value=0.57 Score=39.72 Aligned_cols=70 Identities=4% Similarity=0.003 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
|...|.|+.- ..|.++.+ |.++++|+++|||.|.. ++... +++..-.+.|.|. . +.+++|+.
T Consensus 17 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~etg~~I~i-----~~~g~-~~~~~~~V~I~G~-~--------e~v~~A~~ 79 (97)
T 2ctl_A 17 FKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQF-----PDKDD-GNQPQDQITITGY-E--------KNTEAARD 79 (97)
T ss_dssp CEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTT-CSSCSSEEEEESC-H--------HHHHHHHH
T ss_pred eeEEEEECHH--HhhhcCCCCchhHHHHHHHHCCEEEe-----cCCCC-CCCCccEEEEEeC-H--------HHHHHHHH
Confidence 4668888875 48999988 99999999999999865 22111 1123344677886 3 47899999
Q ss_pred HHHHHHHc
Q 008284 183 MVEEMLKQ 190 (571)
Q Consensus 183 eIeEILKE 190 (571)
+|..++++
T Consensus 80 ~I~~iv~e 87 (97)
T 2ctl_A 80 AILRIVGE 87 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 67
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=91.03 E-value=0.49 Score=37.90 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=48.7
Q ss_pred EEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008284 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (571)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Avae 183 (571)
.-+|.|..- .++..+.+ |+++++|+++|||.|.+-.. + ..++ .+.|.|.. ..+++|+.+
T Consensus 6 ~~~i~ip~~--~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~---~~er--~v~I~G~~---------~~v~~A~~~ 65 (73)
T 2axy_A 6 TIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG----N---CPER--IITLAGPT---------NAIFKAFAM 65 (73)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECSS----C---CSEE--EEEEEECH---------HHHHHHHHH
T ss_pred EEEEEEChh--HeeeEECCCCHHHHHHHHHHCCEEEEecC----C---CCcE--EEEEEeCH---------HHHHHHHHH
Confidence 445666553 47788877 89999999999999877431 1 1233 45778873 479999999
Q ss_pred HHHHHHcc
Q 008284 184 VEEMLKQG 191 (571)
Q Consensus 184 IeEILKE~ 191 (571)
|.++|.++
T Consensus 66 I~~~l~ed 73 (73)
T 2axy_A 66 IIDKLEED 73 (73)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhcC
Confidence 99999874
No 68
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=90.45 E-value=0.4 Score=40.63 Aligned_cols=69 Identities=6% Similarity=0.048 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|+.- ..|.++.+ |.++++|+++|||.|.. |+. .+...-.+.|.|.. +.+++|+.
T Consensus 17 vt~~i~Ip~~--~ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~---g~~~~~~V~I~G~~---------e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRF-----PQS---GAPDPNCVTVTGLP---------ENVEEAID 77 (95)
T ss_dssp CCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEEC-----CCT---TCSCTTEEEEESCH---------HHHHHHHH
T ss_pred EEEEEEECHH--HccccCCCCcchHHHHHHHHCCeEEe-----cCC---CCCCCcEEEEEcCH---------HHHHHHHH
Confidence 4668888876 48999977 99999999999999876 221 01123356788874 47999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|+.++++-
T Consensus 78 ~I~~i~~e~ 86 (95)
T 2ctm_A 78 HILNLEEEY 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988763
No 69
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=90.14 E-value=0.33 Score=41.80 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
+..+|.|+.- ..|.++.+ |.++++|+++|||.|.. ++. ++..-.+.|.|.. +.+++|+.
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I-----~~~----g~~~~~V~I~G~~---------e~v~~A~~ 76 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHV-----PAP----ELQSDIIAITGLA---------ANLDRAKA 76 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEEC-----CCT----TTTCCEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEe-----cCC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 5668888765 58999987 99999999999999865 221 1122367888974 37899999
Q ss_pred HHHHHHHc
Q 008284 183 MVEEMLKQ 190 (571)
Q Consensus 183 eIeEILKE 190 (571)
+|+.++++
T Consensus 77 ~I~~i~~e 84 (104)
T 2ctk_A 77 GLLERVKE 84 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988765
No 70
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=89.80 E-value=0.39 Score=45.92 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=51.2
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEE----eCCHHHHHHH
Q 008284 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS----SNNPKSLEEA 285 (571)
Q Consensus 210 qeKIyIpld~~P~FNfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Is----a~~~e~v~kA 285 (571)
+.+|.||-+ -+|.|||.+|.+++.|++++||+|.|-.. + =-+.|. ..|+..+.+|
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~----------~~V~i~t~~~t~dp~~i~KA 63 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTE-----N----------SMVIVEPEAEGIPPVNLMKA 63 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETT-----T----------TEEEEEESSTTSCHHHHHHH
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----C----------CeEEEEeCCCCCCHHHHHHH
Confidence 356777633 48999999999999999999999999642 1 123344 3688999999
Q ss_pred HHHHHHHHHHHH
Q 008284 286 KRLAENLLDTIS 297 (571)
Q Consensus 286 k~LiEnLL~tV~ 297 (571)
+++|..+...+.
T Consensus 64 ~dlI~ai~rgf~ 75 (191)
T 1tua_A 64 AEVVKAISLGFP 75 (191)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 999988776543
No 71
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=83.30 E-value=1.6 Score=37.13 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=50.5
Q ss_pred EEEEEcCCCCcccceeecc-hhHHHHHHhHh-CCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008284 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (571)
Q Consensus 105 ~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~T-GA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Ava 182 (571)
...|.|+-- ..|..+.+ |.++.+|+++| |+.|.. |.. +...-...|.|.. +.|++|+.
T Consensus 18 t~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~~ 77 (95)
T 2ctj_A 18 EVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PVE----GSGSDTVVIRGPS---------SDVEKAKK 77 (95)
T ss_dssp CEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CCT----TTTCCEEEEESCH---------HHHHHHHH
T ss_pred EEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CCC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 557777755 47898977 79999999999 998843 322 2333467888975 37999999
Q ss_pred HHHHHHHcc
Q 008284 183 MVEEMLKQG 191 (571)
Q Consensus 183 eIeEILKE~ 191 (571)
+|++++.+-
T Consensus 78 ~I~~iv~e~ 86 (95)
T 2ctj_A 78 QLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998753
No 72
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=82.55 E-value=0.79 Score=41.60 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHccCCCCCcccc
Q 008284 149 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 200 (571)
Q Consensus 149 k~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeIeEILKE~P~~~pp~~~ 200 (571)
..+++.+|-|......++++|.+.|.++.++...+|++||+..+.|+++.+|
T Consensus 70 ~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 70 DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp SSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred cCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 4788999999987767777888888889999999999999999999988754
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=75.27 E-value=4.9 Score=34.43 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhH-hCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~-TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Av 181 (571)
++.+|+|.-- -.|+++.+ |+++.+|.+. +++.|. +|. ++. -+.|+|.. ..|++|.
T Consensus 27 ~t~~i~vp~~--~h~~IIG~~G~~Ik~i~~~~~~v~I~-----fp~-----~~~--~ItI~G~~---------~~V~~a~ 83 (102)
T 2ctf_A 27 TVSSVAAPSW--LHRFIIGKKGQNLAKITQQMPKVHIE-----FTE-----GED--KITLEGPT---------EDVSVAQ 83 (102)
T ss_dssp EEEEEECCST--THHHHHTTTTCHHHHHHHHCSSSEEE-----ECS-----SSC--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEeCHH--HHhhhcCCCCccHHHHHHHcCCcEEE-----eCC-----CCC--EEEEECCH---------HHHHHHH
Confidence 4778888754 58999976 9999999996 577662 554 222 57889985 4799999
Q ss_pred HHHHHHHHc
Q 008284 182 AMVEEMLKQ 190 (571)
Q Consensus 182 aeIeEILKE 190 (571)
.+|+.++++
T Consensus 84 ~~I~~~v~e 92 (102)
T 2ctf_A 84 EQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 74
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=58.21 E-value=3.6 Score=35.24 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCcccceeecc-hhHHHHHHhHhCCe-EeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 008284 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (571)
Q Consensus 104 f~aEIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~-VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~Av 181 (571)
|..+|.|+-= ..|..+.+ |.++++|+++||+. |...- ++. .+.|.|.+. +++++|+
T Consensus 15 ~i~~i~I~~d--kIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~--------ea~~~A~ 72 (91)
T 2cpq_A 15 FHEEFVVRED--LMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA--------DAVKKAR 72 (91)
T ss_dssp EEEEEECCHH--HHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH--------HHHHHHH
T ss_pred eEEEEEEChH--HhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH--------HHHHHHH
Confidence 5678888743 57888977 99999999999997 87731 122 356788765 5889998
Q ss_pred HHHHHH
Q 008284 182 AMVEEM 187 (571)
Q Consensus 182 aeIeEI 187 (571)
.+|+.+
T Consensus 73 ~~I~~i 78 (91)
T 2cpq_A 73 GFLEFV 78 (91)
T ss_dssp HHHSCC
T ss_pred HHHHhh
Confidence 888766
No 75
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=44.38 E-value=29 Score=33.52 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=38.7
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008284 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (571)
Q Consensus 225 fvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kAk~Li 289 (571)
.+.+++|++|..++.|.+.++|+|.| |+ .-.++|.+.+.+....+.+.|
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~v-G~---------------NG~IWi~~~~~~~~~~~~~ai 206 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFV-AR---------------NGRIHLECPNEDLEAIAVMAI 206 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEE-ET---------------TTEEEEECSCHHHHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEE-eC---------------CCEEEEecCCHHHHHHHHHHH
Confidence 57899999999999999999999988 53 147999999987655444333
No 76
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=36.95 E-value=1.2e+02 Score=26.09 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=32.2
Q ss_pred hhHHHHHHhh-CcEEEEeecCCCCCCCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 008284 235 QYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 299 (571)
Q Consensus 235 stlK~Iq~ET-GaKV~IRGRGSg~~E~~~g~EsdEP-LHV~Isa~~~e~v~kAk~LiEnLL~tV~eE 299 (571)
..+..|+.+. +.+|.||- || .|| ++|++++.+.+ .|.++++.+.+.|.+.
T Consensus 45 ~~idgl~~~~~~gwvlvRp--SG----------TEP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRP--SG----------TEDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEEC--SS----------SSSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEe--CC----------CccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 3455555554 55889987 33 345 89999999875 4555555555555544
No 77
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=33.82 E-value=10 Score=34.85 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=25.4
Q ss_pred eeeEeCCCchhHHHHHHhhCcEEEEee
Q 008284 226 AARIRGPNDQYINHIMNETGATVLLRG 252 (571)
Q Consensus 226 vGrIIGPrGstlK~Iq~ETGaKV~IRG 252 (571)
+|..||++|+.++.|++|.|-||-|--
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEE
Confidence 899999999999999999999997765
No 78
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=31.66 E-value=84 Score=28.89 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=26.7
Q ss_pred HHHHHhhCcEE--EEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 008284 238 NHIMNETGATV--LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEA 285 (571)
Q Consensus 238 K~Iq~ETGaKV--~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~kA 285 (571)
.++.+|.+..| +|-|.|||. |-+...|+|-+.+++|
T Consensus 63 erl~~efni~v~y~imgsgsgv------------m~i~f~gddlea~eka 100 (170)
T 4hhu_A 63 ERLKAEFNINVQYQIMGSGSGV------------MVIVFEGDDLEALEKA 100 (170)
T ss_dssp HHHHHHHTCEEEEEEECTTCCE------------EEEEEECSCHHHHHHH
T ss_pred HHHHHhcceEEEEEEEeCCceE------------EEEEEecCcHHHHHHH
Confidence 45566676666 788888875 5677888888888887
No 79
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=30.52 E-value=36 Score=37.79 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=42.2
Q ss_pred EEEcCCCCcccceeecc-hhHHHHHHhHhCCeEeecccccCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008284 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (571)
Q Consensus 107 EIEINDlPq~vRy~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPgk~~~~EpPLYL~Ieg~Te~kdt~ERikaVd~AvaeIe 185 (571)
.|.|+-- +.|-.+.+ |.++++|+++||+.|.+-- +- -+.|.|.+. .++++|+..|+
T Consensus 570 ~~~I~~~--kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G--~V~I~~~~~--------~~~~~A~~~I~ 626 (630)
T 3u1k_A 570 TVQVPLS--KRAKFVGPGGYNLKKLQAETGVTISQVD-----------EE--TFSVFAPTP--------SAMHEARDFIT 626 (630)
T ss_dssp EEECCHH--HHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SS--EEEEEESSH--------HHHHHHHHHTT
T ss_pred EEEeChh--HhheeECCCChhHHHHHHHHCCEEEEcC-----------Cc--EEEEEeCCH--------HHHHHHHHHHH
Confidence 5566533 56777866 8999999999999986631 11 457788764 57899999998
Q ss_pred HHHH
Q 008284 186 EMLK 189 (571)
Q Consensus 186 EILK 189 (571)
.|++
T Consensus 627 ~i~~ 630 (630)
T 3u1k_A 627 EICK 630 (630)
T ss_dssp C---
T ss_pred HHhC
Confidence 8763
No 80
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.08 E-value=44 Score=32.27 Aligned_cols=40 Identities=13% Similarity=0.318 Sum_probs=32.5
Q ss_pred ceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCH
Q 008284 224 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNP 279 (571)
Q Consensus 224 NfvGrIIGPrGstlK~Iq~ETGaKV~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~ 279 (571)
+.+.+++|+++..++.|.+.++|.|.| |. + -.++|.+.+.
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~--------N-------G~IWi~~~~~ 184 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ--------N-------GLIWVNGDRR 184 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT--------T-------SEEEEESCHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC--------C-------cEEEEeCCch
Confidence 357789999999999999999999988 42 1 3789997655
No 81
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.62 E-value=17 Score=35.47 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.9
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHH--------HHhhCcEEEEe
Q 008284 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHI--------MNETGATVLLR 251 (571)
Q Consensus 208 ~~qeKIyIpld~~P~FNfvGrIIGPrGstlK~I--------q~ETGaKV~IR 251 (571)
.....|||.-+. -.+.|||.+|..||+| |+..||||.|.
T Consensus 239 ~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 445556665332 3678999999999987 55678888765
No 82
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=20.16 E-value=22 Score=35.76 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHcc
Q 008284 177 VDHAAAMVEEMLKQG 191 (571)
Q Consensus 177 Vd~AvaeIeEILKE~ 191 (571)
..+|...++++++++
T Consensus 188 ~~~al~~~~~l~~~g 202 (449)
T 3iot_A 188 AKAGLTFLVDLIKNK 202 (449)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 344555566666554
Done!