BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008286
         (571 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L82|A Chain A, Solution Nmr Structure Of De Novo Designed Protein, P-Loop
           Ntpase Fold, Northeast Structural Genomics Consortium
           Target Or32
          Length = 162

 Score = 30.4 bits (67), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 303 KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTL 348
           +++K+++    + GVE F++Y+N  +D  +    E   DG +V T+
Sbjct: 90  EWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTV 135


>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
          Length = 384

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 59  KRPHARNLISNVMKDDFQEVTRL----SRHVSSVQDSAKYQSVSVLLPDWEVLVLLSPET 114
           +RP  +  ++++ ++DF  V +L     R++   ++  K  S  +          L PE 
Sbjct: 90  ERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK-ENGRKIGSCLIGAMPGSFYSRLFPEE 148

Query: 115 SLDSVEGFYCLFWNSQTSPARFSGVLPFTERTAFKCAMPNGARRPPLWQPILTKY 169
           S+  +   YCL W SQ  P+     L  +      C   + A RPP+ +  L ++
Sbjct: 149 SMHFLHSCYCLHWLSQV-PSGLVTELGISVNKG--CIYSSKASRPPIQKAYLDQF 200


>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
           Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
 pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
           Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
          Length = 727

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 49  SGTDLRFLPAKRPHARNLISNVMKDDFQEVTRLSRHVSSVQDSAKYQSVSVLLPDWEVL 107
           SG D  F   KRPH  N ++    D+ ++   + +  +  + + ++  +S+L PD E +
Sbjct: 81  SGLDQTFQVEKRPHPLNALT---ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAV 136


>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
           The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
           Formation
 pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
           The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
           Formation
          Length = 727

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 49  SGTDLRFLPAKRPHARNLISNVMKDDFQEVTRLSRHVSSVQDSAKYQSVSVLLPDWEVL 107
           SG D  F   KRPH  N ++    D+ ++   + +  +  + + ++  +S+L PD E +
Sbjct: 81  SGLDQTFQVEKRPHPLNALT---ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAV 136


>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
           Of Escherichia Coli At 2 Angstroems Resolution
 pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
           Of Escherichia Coli At 2 Angstroems Resolution
 pdb|1SPU|A Chain A, Structure Of Oxidoreductase
 pdb|1SPU|B Chain B, Structure Of Oxidoreductase
 pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
           Reduced With Beta-Phenylethylamine
 pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
           Reduced With Beta-Phenylethylamine
 pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
           Oxidase Anaerobically Reduced With Beta-Phenylethylamine
           And Complexed With Nitric Oxide.
 pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
           Oxidase Anaerobically Reduced With Beta-Phenylethylamine
           And Complexed With Nitric Oxide.
 pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
           Rate-determining Catalytic Intermediate Of E. Coli
           Copper-containing Amine Oxidase.
 pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
           Rate-determining Catalytic Intermediate Of E. Coli
           Copper-containing Amine Oxidase.
 pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase: X-Ray Crystallographic
           Studies With Mutational Variants.
 pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase: X-Ray Crystallographic
           Studies With Mutational Variants.
 pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
           Tranylcypromine
 pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
           Tranylcypromine
 pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
 pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
 pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
 pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
 pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
          Length = 727

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 49  SGTDLRFLPAKRPHARNLISNVMKDDFQEVTRLSRHVSSVQDSAKYQSVSVLLPDWEVL 107
           SG D  F   KRPH  N ++    D+ ++   + +  +  + + ++  +S+L PD E +
Sbjct: 81  SGLDQTFQVEKRPHPLNALT---ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAV 136


>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
 pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
          Length = 721

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 49  SGTDLRFLPAKRPHARNLISNVMKDDFQEVTRLSRHVSSVQDSAKYQSVSVLLPDWEVL 107
           SG D  F   KRPH  N ++    D+ ++   + +  +  + + ++  +S+L PD E +
Sbjct: 76  SGLDQTFQVEKRPHPLNALT---ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAV 131


>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-ray Crystallographic
           Studies With Mutational Variants
 pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-ray Crystallographic
           Studies With Mutational Variants
          Length = 722

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 49  SGTDLRFLPAKRPHARNLISNVMKDDFQEVTRLSRHVSSVQDSAKYQSVSVLLPDWEVL 107
           SG D  F   KRPH  N ++    D+ ++   + +  +  + + ++  +S+L PD E +
Sbjct: 76  SGLDQTFQVEKRPHPLNALT---ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAV 131


>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
 pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
           Escherichia Coli Amine Oxidase : X-Ray Crystallographic
           Studies With Mutational Variants
          Length = 721

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 49  SGTDLRFLPAKRPHARNLISNVMKDDFQEVTRLSRHVSSVQDSAKYQSVSVLLPDWEVL 107
           SG D  F   KRPH  N ++    D+ ++   + +  +  + + ++  +S+L PD E +
Sbjct: 76  SGLDQTFQVEKRPHPLNALT---ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAV 131


>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
 pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
 pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
           Sporobolomyces Salmonicolor
 pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
           Sporobolomyces Salmonicolor
          Length = 342

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 96  SVSVLLPDWEVLVLLSPETSLDSVEGFYCLFWNSQTSPA 134
           +++ +LP++ +  +  PET   S  G+    +N + SPA
Sbjct: 199 TLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPA 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,498,520
Number of Sequences: 62578
Number of extensions: 721729
Number of successful extensions: 1466
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 10
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)